Query 008020
Match_columns 581
No_of_seqs 221 out of 2422
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 18:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.3E-44 2.9E-49 388.9 40.0 545 13-563 18-569 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 4.9E-39 1.1E-43 328.8 31.8 462 23-557 15-490 (498)
3 PRK10207 dipeptide/tripeptide 100.0 4.7E-35 1E-39 315.2 40.1 462 25-560 10-482 (489)
4 TIGR00924 yjdL_sub1_fam amino 100.0 3.4E-34 7.4E-39 308.3 39.5 452 25-558 6-472 (475)
5 PRK15462 dipeptide/tripeptide 100.0 4.9E-34 1.1E-38 302.9 39.4 417 26-510 6-437 (493)
6 PRK09584 tppB putative tripept 100.0 1.1E-32 2.5E-37 298.2 41.5 458 25-560 17-485 (500)
7 PRK05122 major facilitator sup 99.9 4.3E-24 9.3E-29 225.5 34.8 376 26-553 12-388 (399)
8 PRK03545 putative arabinose tr 99.9 4.6E-24 1E-28 224.7 32.8 372 28-554 8-380 (390)
9 PRK12382 putative transporter; 99.9 1E-23 2.3E-28 222.1 34.6 374 28-553 14-388 (392)
10 TIGR01299 synapt_SV2 synaptic 99.9 4.4E-24 9.5E-29 237.3 33.0 156 49-235 186-354 (742)
11 PRK11646 multidrug resistance 99.9 7.5E-24 1.6E-28 223.7 32.4 348 32-514 13-360 (400)
12 PRK10054 putative transporter; 99.9 2.9E-24 6.2E-29 226.5 28.5 175 26-232 4-178 (395)
13 COG2814 AraJ Arabinose efflux 99.9 2.6E-23 5.7E-28 211.5 34.0 379 25-557 9-389 (394)
14 PRK10489 enterobactin exporter 99.9 6.2E-24 1.3E-28 225.8 30.9 395 30-567 18-412 (417)
15 PRK11551 putative 3-hydroxyphe 99.9 2.6E-23 5.6E-28 220.1 34.4 356 26-511 12-368 (406)
16 PRK10504 putative transporter; 99.9 4.6E-23 1E-27 222.6 35.0 407 28-514 9-416 (471)
17 PRK10077 xylE D-xylose transpo 99.9 2.4E-23 5.3E-28 225.2 32.5 407 60-566 50-469 (479)
18 PRK11663 regulatory protein Uh 99.9 3E-23 6.5E-28 221.6 31.8 167 30-228 24-190 (434)
19 TIGR00926 2A1704 Peptide:H+ sy 99.9 9.5E-24 2.1E-28 231.8 28.1 334 43-432 1-341 (654)
20 TIGR00900 2A0121 H+ Antiporter 99.9 4.7E-23 1E-27 213.9 30.6 358 33-511 3-361 (365)
21 PRK14995 methyl viologen resis 99.9 3.5E-23 7.6E-28 224.7 30.8 401 28-512 5-412 (495)
22 PRK09874 drug efflux system pr 99.9 6.1E-23 1.3E-27 217.2 30.8 379 29-554 14-398 (408)
23 TIGR00887 2A0109 phosphate:H+ 99.9 1E-22 2.2E-27 221.5 33.3 183 28-235 15-224 (502)
24 TIGR00893 2A0114 d-galactonate 99.9 9.5E-23 2.1E-27 213.4 30.6 153 51-234 15-167 (399)
25 TIGR00879 SP MFS transporter, 99.9 5.2E-23 1.1E-27 221.3 28.5 146 62-235 68-216 (481)
26 PRK10406 alpha-ketoglutarate t 99.9 3.5E-22 7.6E-27 213.3 34.5 174 31-228 24-211 (432)
27 PRK10213 nepI ribonucleoside t 99.9 4.8E-22 1E-26 209.5 34.9 174 24-229 15-188 (394)
28 PRK15402 multidrug efflux syst 99.9 7E-22 1.5E-26 209.2 34.9 158 44-233 28-185 (406)
29 TIGR00903 2A0129 major facilit 99.9 5.3E-22 1.2E-26 206.7 33.2 159 42-233 4-162 (368)
30 PF07690 MFS_1: Major Facilita 99.9 9.9E-23 2.1E-27 210.5 26.6 166 35-231 2-167 (352)
31 PRK10642 proline/glycine betai 99.9 1.1E-21 2.5E-26 212.6 36.0 177 28-228 15-205 (490)
32 TIGR00891 2A0112 putative sial 99.9 4.2E-22 9.2E-27 210.0 31.6 174 24-229 7-182 (405)
33 TIGR00899 2A0120 sugar efflux 99.9 6E-22 1.3E-26 206.9 31.9 169 35-234 3-174 (375)
34 PRK12307 putative sialic acid 99.9 1.9E-22 4.1E-27 214.9 28.5 167 26-224 15-181 (426)
35 PRK09705 cynX putative cyanate 99.9 8.5E-22 1.9E-26 207.6 32.5 358 45-558 25-385 (393)
36 TIGR02332 HpaX 4-hydroxyphenyl 99.9 5.8E-22 1.3E-26 210.1 30.7 176 27-234 6-187 (412)
37 TIGR00711 efflux_EmrB drug res 99.9 3.1E-22 6.7E-27 216.8 29.1 400 30-512 3-409 (485)
38 PLN00028 nitrate transmembrane 99.9 1E-21 2.2E-26 212.1 32.6 177 25-234 32-217 (476)
39 TIGR00890 2A0111 Oxalate/Forma 99.9 2.4E-22 5.1E-27 209.4 26.9 353 28-511 3-355 (377)
40 cd06174 MFS The Major Facilita 99.9 1.2E-21 2.6E-26 201.8 31.7 348 32-551 2-349 (352)
41 PRK09952 shikimate transporter 99.9 1.9E-21 4.2E-26 207.8 34.0 178 26-227 19-211 (438)
42 TIGR00710 efflux_Bcr_CflA drug 99.9 3.8E-21 8.2E-26 201.6 35.2 176 27-234 3-178 (385)
43 PRK09556 uhpT sugar phosphate 99.9 2.5E-22 5.5E-27 216.5 26.6 150 53-228 52-204 (467)
44 PRK10091 MFS transport protein 99.9 2.2E-21 4.9E-26 203.7 32.5 172 28-231 2-173 (382)
45 TIGR00898 2A0119 cation transp 99.9 1.8E-21 4E-26 212.0 32.8 387 54-563 113-503 (505)
46 PRK03699 putative transporter; 99.9 3.1E-21 6.8E-26 203.4 33.4 173 26-230 4-177 (394)
47 PRK11195 lysophospholipid tran 99.9 4.6E-21 9.9E-26 202.0 33.8 166 29-230 3-168 (393)
48 TIGR00892 2A0113 monocarboxyla 99.9 5.3E-22 1.1E-26 213.1 27.1 150 54-235 43-193 (455)
49 COG2271 UhpC Sugar phosphate p 99.9 2.3E-22 4.9E-27 201.9 21.9 175 29-234 25-204 (448)
50 PRK11273 glpT sn-glycerol-3-ph 99.9 2.3E-21 5E-26 208.2 31.5 151 51-229 50-201 (452)
51 TIGR00894 2A0114euk Na(+)-depe 99.9 5.2E-21 1.1E-25 206.3 33.9 147 59-234 70-217 (465)
52 TIGR00897 2A0118 polyol permea 99.9 1.4E-20 3E-25 199.1 35.8 171 25-223 9-180 (402)
53 KOG0569 Permease of the major 99.9 8.5E-22 1.8E-26 206.4 26.0 397 68-567 63-467 (485)
54 PRK03633 putative MFS family t 99.9 4.3E-21 9.3E-26 201.5 31.5 157 28-216 5-161 (381)
55 TIGR00895 2A0115 benzoate tran 99.9 2.4E-21 5.2E-26 203.5 29.4 171 27-229 15-185 (398)
56 PRK15403 multidrug efflux syst 99.9 1.5E-20 3.2E-25 199.4 35.2 148 56-234 42-189 (413)
57 PRK03893 putative sialic acid 99.9 3.1E-21 6.8E-26 209.7 30.3 168 26-225 17-184 (496)
58 PRK15011 sugar efflux transpor 99.9 1.5E-20 3.3E-25 198.1 33.7 173 29-233 15-191 (393)
59 PRK11652 emrD multidrug resist 99.9 1.7E-20 3.7E-25 197.8 32.7 172 26-229 5-176 (394)
60 PRK09528 lacY galactoside perm 99.9 5.1E-21 1.1E-25 203.6 28.6 393 28-555 9-404 (420)
61 PRK15075 citrate-proton sympor 99.9 2.6E-20 5.7E-25 198.9 33.2 172 28-223 14-199 (434)
62 TIGR00902 2A0127 phenyl propri 99.9 7.2E-20 1.6E-24 192.2 33.7 366 30-549 5-374 (382)
63 PRK11043 putative transporter; 99.9 1.1E-19 2.3E-24 192.1 34.4 162 41-234 18-179 (401)
64 PRK11102 bicyclomycin/multidru 99.9 1.2E-19 2.6E-24 189.9 33.5 157 44-232 6-162 (377)
65 TIGR00712 glpT glycerol-3-phos 99.9 2.2E-20 4.8E-25 199.8 27.9 175 30-233 28-203 (438)
66 PF05977 MFS_3: Transmembrane 99.9 1.6E-19 3.4E-24 194.6 33.8 359 29-512 10-368 (524)
67 PF00854 PTR2: POT family; In 99.9 2.6E-22 5.7E-27 209.8 11.8 365 96-497 1-370 (372)
68 TIGR00881 2A0104 phosphoglycer 99.9 9E-21 1.9E-25 197.6 23.2 149 52-231 17-166 (379)
69 PRK10473 multidrug efflux syst 99.9 3.1E-19 6.6E-24 188.1 35.0 169 31-231 5-173 (392)
70 KOG0254 Predicted transporter 99.9 6.8E-20 1.5E-24 199.7 29.9 405 66-567 90-496 (513)
71 TIGR00792 gph sugar (Glycoside 99.9 2.8E-19 6E-24 191.1 33.9 355 38-514 8-381 (437)
72 TIGR00882 2A0105 oligosacchari 99.9 1.9E-19 4.2E-24 189.9 31.6 389 29-551 2-392 (396)
73 TIGR00889 2A0110 nucleoside tr 99.9 2.8E-19 6.1E-24 189.8 32.9 389 32-559 5-407 (418)
74 PRK10133 L-fucose transporter; 99.9 4.7E-19 1E-23 189.1 34.3 154 27-209 24-177 (438)
75 PRK15034 nitrate/nitrite trans 99.9 2.5E-19 5.5E-24 188.7 29.5 178 29-234 34-230 (462)
76 PRK08633 2-acyl-glycerophospho 99.9 5.1E-19 1.1E-23 211.6 35.5 155 29-211 9-165 (1146)
77 TIGR00886 2A0108 nitrite extru 99.9 5.7E-20 1.2E-24 191.4 23.9 159 30-219 2-170 (366)
78 KOG2532 Permease of the major 99.9 6.7E-20 1.5E-24 194.2 24.2 376 59-554 67-447 (466)
79 COG2223 NarK Nitrate/nitrite t 99.9 4.6E-19 9.9E-24 178.6 28.5 391 25-556 10-403 (417)
80 PRK11128 putative 3-phenylprop 99.9 7.6E-19 1.6E-23 184.5 31.7 338 36-512 11-354 (382)
81 KOG1330 Sugar transporter/spin 99.9 1.3E-20 2.8E-25 191.1 17.1 178 28-237 32-210 (493)
82 PRK06814 acylglycerophosphoeth 99.8 5.7E-19 1.2E-23 210.8 33.4 345 56-511 42-394 (1140)
83 TIGR00883 2A0106 metabolite-pr 99.8 1.2E-18 2.5E-23 182.7 29.0 156 52-230 15-185 (394)
84 PRK11010 ampG muropeptide tran 99.8 1.2E-17 2.6E-22 180.9 35.3 176 28-233 11-192 (491)
85 TIGR00885 fucP L-fucose:H+ sym 99.8 2.2E-17 4.8E-22 174.7 34.4 171 30-229 4-200 (410)
86 TIGR00896 CynX cyanate transpo 99.8 4.4E-18 9.6E-23 176.8 25.4 324 52-514 22-349 (355)
87 TIGR00901 2A0125 AmpG-related 99.8 9E-18 2E-22 174.5 27.2 154 52-234 10-176 (356)
88 PF00083 Sugar_tr: Sugar (and 99.8 3.4E-23 7.3E-28 222.4 -15.0 394 66-567 47-449 (451)
89 PRK11902 ampG muropeptide tran 99.8 1.4E-16 3E-21 168.6 34.5 168 34-231 4-177 (402)
90 TIGR01301 GPH_sucrose GPH fami 99.8 4.2E-16 9.1E-21 165.5 35.2 441 30-558 5-475 (477)
91 PF03825 Nuc_H_symport: Nucleo 99.8 4.3E-16 9.4E-21 163.2 32.8 381 34-556 7-397 (400)
92 PRK10429 melibiose:sodium symp 99.8 4.5E-16 9.8E-21 168.1 32.9 364 35-515 12-395 (473)
93 KOG0252 Inorganic phosphate tr 99.8 6.2E-18 1.3E-22 170.9 15.7 435 27-567 36-510 (538)
94 KOG0255 Synaptic vesicle trans 99.8 1E-15 2.2E-20 167.6 33.9 140 58-231 111-250 (521)
95 PRK09848 glucuronide transport 99.8 2E-15 4.4E-20 162.0 34.0 360 35-515 14-390 (448)
96 PRK09669 putative symporter Ya 99.8 1.5E-15 3.2E-20 162.9 31.9 170 36-229 16-197 (444)
97 KOG2615 Permease of the major 99.7 1.1E-16 2.4E-21 158.2 20.4 119 60-210 63-181 (451)
98 PF06609 TRI12: Fungal trichot 99.7 3.8E-15 8.3E-20 160.4 32.5 149 51-232 65-213 (599)
99 TIGR00788 fbt folate/biopterin 99.7 6.1E-15 1.3E-19 158.6 33.4 379 30-514 27-414 (468)
100 TIGR00805 oat sodium-independe 99.7 1.5E-15 3.2E-20 168.7 28.3 203 26-235 29-280 (633)
101 TIGR00806 rfc RFC reduced fola 99.7 1.9E-15 4.1E-20 156.7 26.6 156 47-235 43-202 (511)
102 TIGR02718 sider_RhtX_FptX side 99.7 2.1E-14 4.6E-19 151.2 34.2 177 31-235 3-183 (390)
103 COG0738 FucP Fucose permease [ 99.7 4.8E-15 1E-19 148.7 27.4 151 32-210 15-165 (422)
104 KOG0253 Synaptic vesicle trans 99.7 3.1E-15 6.7E-20 147.0 24.7 422 41-562 89-527 (528)
105 PTZ00207 hypothetical protein; 99.7 8.6E-14 1.9E-18 150.9 37.9 171 26-227 25-196 (591)
106 PF01306 LacY_symp: LacY proto 99.7 2.4E-15 5.2E-20 155.1 24.5 393 29-558 7-404 (412)
107 KOG3764 Vesicular amine transp 99.7 3.1E-16 6.6E-21 156.1 16.1 149 58-236 99-247 (464)
108 PF13347 MFS_2: MFS/sugar tran 99.7 8.8E-15 1.9E-19 156.1 25.4 358 38-515 10-386 (428)
109 PRK11462 putative transporter; 99.6 2.8E-13 6E-18 145.6 33.0 152 35-209 15-170 (460)
110 KOG2504 Monocarboxylate transp 99.6 2.1E-14 4.5E-19 154.3 22.9 420 31-554 44-476 (509)
111 COG2807 CynX Cyanate permease 99.6 2.3E-13 5.1E-18 134.7 27.1 336 41-515 24-361 (395)
112 KOG2533 Permease of the major 99.6 1.4E-13 3E-18 146.7 27.5 151 56-237 72-228 (495)
113 COG2211 MelB Na+/melibiose sym 99.6 1.9E-11 4E-16 127.7 35.1 363 32-514 15-397 (467)
114 PF11700 ATG22: Vacuole efflux 99.5 2E-11 4.3E-16 130.7 34.5 86 453-553 382-467 (477)
115 PRK10642 proline/glycine betai 99.5 6.8E-13 1.5E-17 144.1 18.8 180 27-235 248-429 (490)
116 PF03209 PUCC: PUCC protein; 99.5 1.5E-10 3.3E-15 117.7 32.4 348 57-515 7-365 (403)
117 PRK15011 sugar efflux transpor 99.5 2.8E-12 6E-17 135.3 19.4 177 27-235 214-390 (393)
118 PRK09556 uhpT sugar phosphate 99.4 3.1E-12 6.7E-17 138.1 17.4 177 29-234 258-447 (467)
119 PRK09952 shikimate transporter 99.4 4.6E-12 9.9E-17 135.6 18.5 183 26-235 247-432 (438)
120 KOG4686 Predicted sugar transp 99.4 2.7E-13 5.9E-18 128.8 6.9 137 50-213 64-200 (459)
121 TIGR00890 2A0111 Oxalate/Forma 99.4 3.6E-12 7.7E-17 132.6 16.1 170 30-229 206-375 (377)
122 KOG2563 Permease of the major 99.4 2.4E-11 5.2E-16 123.7 19.7 386 51-565 66-461 (480)
123 PRK05122 major facilitator sup 99.4 1.3E-11 2.8E-16 130.4 18.2 173 32-238 219-391 (399)
124 KOG2325 Predicted transporter/ 99.4 5.9E-12 1.3E-16 131.6 15.2 164 18-208 23-188 (488)
125 TIGR00883 2A0106 metabolite-pr 99.4 4.2E-12 9.2E-17 132.9 14.0 172 26-225 216-390 (394)
126 PRK03699 putative transporter; 99.4 1.3E-11 2.9E-16 130.1 17.2 170 29-230 205-374 (394)
127 COG2271 UhpC Sugar phosphate p 99.4 7.6E-12 1.7E-16 126.5 13.6 178 29-234 252-432 (448)
128 cd06174 MFS The Major Facilita 99.4 2.7E-11 5.8E-16 124.5 17.9 172 30-232 176-348 (352)
129 PRK11551 putative 3-hydroxyphe 99.3 2.2E-11 4.7E-16 128.9 17.4 171 31-233 222-393 (406)
130 TIGR00889 2A0110 nucleoside tr 99.3 1.6E-11 3.5E-16 130.5 16.2 179 30-236 209-402 (418)
131 TIGR00899 2A0120 sugar efflux 99.3 3.2E-11 6.9E-16 125.9 18.1 172 31-234 201-372 (375)
132 PRK09705 cynX putative cyanate 99.3 8.5E-11 1.8E-15 123.9 20.0 176 29-237 205-382 (393)
133 TIGR00902 2A0127 phenyl propri 99.3 6.2E-11 1.3E-15 124.5 18.7 169 29-231 205-374 (382)
134 PRK03545 putative arabinose tr 99.3 1.4E-10 3E-15 122.1 20.1 174 30-236 206-380 (390)
135 PRK09874 drug efflux system pr 99.3 4.2E-11 9E-16 126.7 15.8 168 36-234 226-396 (408)
136 TIGR00880 2_A_01_02 Multidrug 99.3 1.5E-11 3.4E-16 108.5 10.0 132 72-234 5-136 (141)
137 PRK12382 putative transporter; 99.3 7.5E-11 1.6E-15 124.2 16.9 165 36-234 223-387 (392)
138 TIGR01299 synapt_SV2 synaptic 99.3 7.9E-11 1.7E-15 131.8 17.2 132 71-234 601-732 (742)
139 PRK03633 putative MFS family t 99.3 1.7E-10 3.7E-15 121.1 18.8 159 39-232 210-368 (381)
140 PRK10489 enterobactin exporter 99.3 5.6E-11 1.2E-15 126.3 15.3 157 45-232 239-395 (417)
141 PRK11273 glpT sn-glycerol-3-ph 99.3 7.4E-11 1.6E-15 126.8 16.1 176 29-233 253-432 (452)
142 KOG2816 Predicted transporter 99.3 3.8E-09 8.3E-14 112.0 28.6 355 35-515 27-394 (463)
143 TIGR01272 gluP glucose/galacto 99.3 5.9E-10 1.3E-14 113.4 21.3 78 141-224 8-101 (310)
144 TIGR00893 2A0114 d-galactonate 99.3 1.5E-10 3.2E-15 121.0 17.4 176 29-232 215-395 (399)
145 TIGR00897 2A0118 polyol permea 99.3 2.6E-10 5.6E-15 120.7 19.1 177 29-234 222-399 (402)
146 COG2270 Permeases of the major 99.2 3.3E-09 7E-14 107.9 25.0 129 49-205 35-171 (438)
147 PRK03893 putative sialic acid 99.2 1.9E-10 4.1E-15 125.1 17.6 148 47-223 293-440 (496)
148 PRK15075 citrate-proton sympor 99.2 1.5E-10 3.2E-15 123.8 16.3 153 35-215 244-398 (434)
149 PRK10406 alpha-ketoglutarate t 99.2 2.4E-10 5.2E-15 122.1 17.8 174 32-234 245-422 (432)
150 PRK09528 lacY galactoside perm 99.2 9.2E-11 2E-15 124.8 14.2 172 31-233 225-400 (420)
151 PRK11663 regulatory protein Uh 99.2 2.5E-10 5.4E-15 122.1 17.5 177 29-233 243-421 (434)
152 TIGR00891 2A0112 putative sial 99.2 1.5E-10 3.2E-15 122.0 15.1 158 33-220 242-400 (405)
153 PRK11010 ampG muropeptide tran 99.2 4.7E-10 1E-14 121.7 18.7 180 31-237 224-404 (491)
154 PF11700 ATG22: Vacuole efflux 99.2 7.7E-10 1.7E-14 118.5 18.8 183 28-235 280-467 (477)
155 TIGR00892 2A0113 monocarboxyla 99.2 3.7E-10 8.1E-15 121.4 15.0 172 29-231 241-416 (455)
156 PF03092 BT1: BT1 family; Int 99.2 2.2E-08 4.8E-13 106.6 28.1 158 52-234 12-173 (433)
157 COG2814 AraJ Arabinose efflux 99.2 2.1E-09 4.5E-14 110.2 18.8 177 29-237 211-387 (394)
158 TIGR00879 SP MFS transporter, 99.1 1E-09 2.2E-14 117.9 17.3 167 47-234 302-468 (481)
159 TIGR00712 glpT glycerol-3-phos 99.1 6.2E-10 1.3E-14 119.2 15.2 176 29-233 251-430 (438)
160 PRK11128 putative 3-phenylprop 99.1 2.4E-09 5.2E-14 112.4 18.5 169 29-231 205-374 (382)
161 TIGR00881 2A0104 phosphoglycer 99.1 4.7E-10 1E-14 116.7 12.9 162 29-218 216-379 (379)
162 TIGR01272 gluP glucose/galacto 99.1 1.9E-09 4.2E-14 109.6 16.8 164 29-226 140-305 (310)
163 PRK10504 putative transporter; 99.1 1.9E-09 4.1E-14 116.5 17.3 158 29-214 261-418 (471)
164 KOG4686 Predicted sugar transp 99.1 1.2E-09 2.6E-14 104.4 13.4 160 21-213 256-416 (459)
165 TIGR02332 HpaX 4-hydroxyphenyl 99.1 1.4E-09 2.9E-14 115.6 15.5 165 29-224 242-409 (412)
166 PRK15402 multidrug efflux syst 99.1 4.9E-09 1.1E-13 111.0 19.7 172 30-228 216-387 (406)
167 TIGR02718 sider_RhtX_FptX side 99.1 2.9E-09 6.3E-14 112.1 17.9 175 30-230 209-385 (390)
168 TIGR00792 gph sugar (Glycoside 99.1 1.2E-09 2.5E-14 116.8 14.3 161 29-214 222-383 (437)
169 KOG3626 Organic anion transpor 99.1 1.6E-08 3.4E-13 110.5 22.8 206 28-240 95-347 (735)
170 COG2223 NarK Nitrate/nitrite t 99.1 2.5E-09 5.4E-14 108.6 15.5 185 28-237 217-402 (417)
171 TIGR00900 2A0121 H+ Antiporter 99.1 1.8E-09 4E-14 111.7 14.7 155 29-213 210-365 (365)
172 PF03137 OATP: Organic Anion T 99.1 2.1E-11 4.6E-16 132.3 -0.7 191 41-242 14-256 (539)
173 PRK11902 ampG muropeptide tran 99.0 4E-09 8.8E-14 111.5 16.5 174 30-234 210-388 (402)
174 PRK12307 putative sialic acid 99.0 9.5E-09 2.1E-13 109.4 18.1 146 44-219 246-391 (426)
175 TIGR00894 2A0114euk Na(+)-depe 99.0 9.2E-09 2E-13 111.0 18.0 177 29-234 261-448 (465)
176 PLN00028 nitrate transmembrane 99.0 6.4E-09 1.4E-13 112.5 16.5 174 30-236 253-433 (476)
177 TIGR00710 efflux_Bcr_CflA drug 99.0 7.7E-09 1.7E-13 108.2 16.4 163 30-220 207-370 (385)
178 PRK14995 methyl viologen resis 99.0 5E-09 1.1E-13 113.9 15.2 154 29-210 259-412 (495)
179 TIGR00896 CynX cyanate transpo 99.0 9.6E-09 2.1E-13 106.6 16.6 154 29-213 197-350 (355)
180 TIGR00882 2A0105 oligosacchari 99.0 7.4E-09 1.6E-13 109.2 15.7 171 30-231 216-390 (396)
181 PRK10091 MFS transport protein 99.0 1.6E-08 3.5E-13 106.1 18.1 172 30-233 200-373 (382)
182 TIGR00711 efflux_EmrB drug res 99.0 6E-09 1.3E-13 112.9 14.9 156 29-211 255-410 (485)
183 TIGR00895 2A0115 benzoate tran 99.0 5.1E-09 1.1E-13 109.8 13.6 147 30-208 251-397 (398)
184 PRK10077 xylE D-xylose transpo 99.0 2.8E-08 6E-13 107.6 19.0 157 50-234 292-455 (479)
185 PF05977 MFS_3: Transmembrane 99.0 1.7E-08 3.6E-13 109.5 16.9 173 30-233 219-391 (524)
186 PF05631 DUF791: Protein of un 99.0 5E-07 1.1E-11 90.9 26.0 149 58-234 62-214 (354)
187 PRK15034 nitrate/nitrite trans 98.9 3.2E-08 7E-13 104.9 18.3 185 30-235 253-453 (462)
188 PRK10213 nepI ribonucleoside t 98.9 6.5E-08 1.4E-12 102.0 19.4 165 29-226 216-381 (394)
189 PRK11646 multidrug resistance 98.9 2.5E-08 5.4E-13 105.4 16.0 154 47-231 226-383 (400)
190 COG2270 Permeases of the major 98.9 1.7E-08 3.7E-13 102.7 13.8 175 29-234 252-427 (438)
191 PRK10133 L-fucose transporter; 98.9 4E-08 8.6E-13 105.1 17.2 168 30-231 259-428 (438)
192 PRK10054 putative transporter; 98.9 2.3E-08 5.1E-13 105.5 15.0 174 29-233 206-381 (395)
193 KOG3098 Uncharacterized conser 98.9 1.3E-06 2.9E-11 91.7 27.5 103 71-205 56-158 (461)
194 PRK08633 2-acyl-glycerophospho 98.9 3.1E-08 6.6E-13 119.1 17.6 163 29-222 232-396 (1146)
195 PRK09848 glucuronide transport 98.9 2.3E-08 5E-13 107.4 14.9 163 29-214 228-391 (448)
196 TIGR00887 2A0109 phosphate:H+ 98.9 2.7E-08 5.8E-13 108.5 15.5 167 36-230 295-483 (502)
197 PF07690 MFS_1: Major Facilita 98.9 5.7E-09 1.2E-13 107.5 9.1 145 30-202 207-352 (352)
198 PF13347 MFS_2: MFS/sugar tran 98.9 9.2E-08 2E-12 102.1 18.0 162 29-214 225-387 (428)
199 PRK06814 acylglycerophosphoeth 98.9 3.4E-08 7.4E-13 118.5 16.3 184 29-223 225-409 (1140)
200 TIGR00903 2A0129 major facilit 98.8 1.5E-07 3.2E-12 98.2 17.2 166 29-232 192-361 (368)
201 PRK11102 bicyclomycin/multidru 98.8 1.3E-07 2.9E-12 98.7 16.6 149 30-206 195-344 (377)
202 PRK11195 lysophospholipid tran 98.8 2.5E-07 5.5E-12 97.5 18.6 158 41-230 217-374 (393)
203 KOG3762 Predicted transporter 98.8 6.2E-07 1.3E-11 93.6 19.7 141 374-559 411-552 (618)
204 TIGR00901 2A0125 AmpG-related 98.8 7.9E-08 1.7E-12 99.8 13.3 145 30-195 210-355 (356)
205 COG2807 CynX Cyanate permease 98.7 6.7E-07 1.4E-11 89.4 18.1 163 30-223 209-372 (395)
206 PRK10429 melibiose:sodium symp 98.7 3.6E-07 7.8E-12 98.9 17.9 165 29-214 231-396 (473)
207 KOG2504 Monocarboxylate transp 98.7 7E-08 1.5E-12 104.1 12.2 176 29-236 298-476 (509)
208 PRK11043 putative transporter; 98.7 6.5E-07 1.4E-11 94.6 19.3 157 32-216 206-362 (401)
209 KOG2532 Permease of the major 98.7 9.7E-08 2.1E-12 101.8 12.6 177 29-234 258-445 (466)
210 TIGR00898 2A0119 cation transp 98.7 1.8E-07 3.9E-12 102.0 14.7 132 72-234 362-493 (505)
211 PRK10473 multidrug efflux syst 98.7 5.1E-07 1.1E-11 95.1 16.6 79 37-116 211-289 (392)
212 PRK09669 putative symporter Ya 98.6 4.5E-07 9.7E-12 97.3 15.1 162 29-214 229-391 (444)
213 PF03825 Nuc_H_symport: Nucleo 98.6 1.8E-06 3.9E-11 90.8 18.5 178 31-234 209-393 (400)
214 TIGR00885 fucP L-fucose:H+ sym 98.6 7.4E-07 1.6E-11 94.5 15.2 166 30-229 233-405 (410)
215 TIGR00886 2A0108 nitrite extru 98.6 3.2E-07 6.8E-12 95.4 12.2 140 30-197 226-365 (366)
216 KOG0569 Permease of the major 98.6 6.7E-07 1.5E-11 94.7 14.5 183 28-234 268-452 (485)
217 KOG1330 Sugar transporter/spin 98.6 2.4E-08 5.3E-13 102.4 2.9 150 371-564 70-219 (493)
218 PF03209 PUCC: PUCC protein; 98.6 2.1E-06 4.5E-11 87.9 16.8 174 33-233 212-395 (403)
219 PF01306 LacY_symp: LacY proto 98.6 1.4E-06 3E-11 90.6 15.7 177 29-236 220-400 (412)
220 KOG0253 Synaptic vesicle trans 98.6 1.1E-06 2.4E-11 87.5 14.1 170 29-231 326-514 (528)
221 PRK11652 emrD multidrug resist 98.5 5.1E-06 1.1E-10 87.5 18.4 144 44-216 222-365 (394)
222 KOG4332 Predicted sugar transp 98.5 3E-06 6.6E-11 80.8 14.2 93 54-172 61-154 (454)
223 TIGR00880 2_A_01_02 Multidrug 98.5 2.6E-06 5.7E-11 74.7 13.4 132 378-554 7-138 (141)
224 PRK15403 multidrug efflux syst 98.3 1.6E-05 3.5E-10 84.4 17.4 170 29-227 218-388 (413)
225 PRK11462 putative transporter; 98.3 3.4E-05 7.3E-10 83.1 19.6 161 29-214 228-390 (460)
226 PF01770 Folate_carrier: Reduc 98.3 0.00034 7.3E-09 72.6 25.5 155 49-235 23-181 (412)
227 KOG3764 Vesicular amine transp 98.3 3.7E-06 8E-11 84.9 10.4 145 371-560 108-253 (464)
228 TIGR00924 yjdL_sub1_fam amino 98.3 1.3E-05 2.9E-10 86.6 15.7 181 34-235 277-467 (475)
229 PF06813 Nodulin-like: Nodulin 98.3 1.6E-05 3.5E-10 77.3 14.6 158 51-235 23-181 (250)
230 COG0477 ProP Permeases of the 98.3 2.3E-05 5.1E-10 77.8 16.3 153 43-225 16-174 (338)
231 COG2211 MelB Na+/melibiose sym 98.2 2.3E-05 5E-10 82.5 14.6 161 29-212 236-397 (467)
232 PF02487 CLN3: CLN3 protein; 98.2 0.00079 1.7E-08 69.9 24.1 60 450-509 334-393 (402)
233 COG0738 FucP Fucose permease [ 98.1 4.2E-05 9.1E-10 77.9 14.2 163 30-226 237-400 (422)
234 PF12832 MFS_1_like: MFS_1 lik 98.1 2.9E-05 6.3E-10 60.9 8.8 70 34-105 5-74 (77)
235 PF06963 FPN1: Ferroportin1 (F 98.1 0.003 6.4E-08 66.7 26.5 189 29-231 2-195 (432)
236 TIGR00788 fbt folate/biopterin 98.0 1.3E-05 2.9E-10 86.4 8.9 146 57-223 280-430 (468)
237 PRK10207 dipeptide/tripeptide 98.0 4.3E-05 9.4E-10 82.8 12.6 105 379-511 60-167 (489)
238 PRK09584 tppB putative tripept 98.0 0.00012 2.7E-09 79.6 15.9 147 38-206 281-439 (500)
239 PRK15462 dipeptide/tripeptide 98.0 5.8E-05 1.3E-09 81.1 12.7 134 378-555 54-190 (493)
240 TIGR01301 GPH_sucrose GPH fami 98.0 0.00015 3.3E-09 77.6 15.3 208 23-238 252-473 (477)
241 TIGR00805 oat sodium-independe 97.9 6.7E-05 1.5E-09 83.9 12.5 132 371-512 70-233 (633)
242 KOG2533 Permease of the major 97.9 5.6E-05 1.2E-09 81.2 11.3 161 30-220 274-440 (495)
243 TIGR00769 AAA ADP/ATP carrier 97.9 0.018 4E-07 61.5 30.2 167 27-209 5-189 (472)
244 KOG3762 Predicted transporter 97.9 6.4E-05 1.4E-09 78.9 9.4 170 38-239 380-550 (618)
245 PF00083 Sugar_tr: Sugar (and 97.8 2.5E-07 5.4E-12 99.4 -9.7 180 30-234 253-434 (451)
246 KOG0637 Sucrose transporter an 97.8 0.00037 8E-09 72.0 13.3 162 29-208 32-202 (498)
247 KOG0254 Predicted transporter 97.8 0.0004 8.7E-09 76.0 14.6 154 26-198 291-444 (513)
248 PF06609 TRI12: Fungal trichot 97.7 0.00067 1.4E-08 74.1 14.8 139 371-555 80-218 (599)
249 PTZ00207 hypothetical protein; 97.6 0.0012 2.6E-08 72.5 14.7 129 386-555 78-206 (591)
250 KOG0252 Inorganic phosphate tr 97.5 0.00016 3.5E-09 74.6 6.7 178 29-234 304-496 (538)
251 TIGR00806 rfc RFC reduced fola 97.5 0.0029 6.2E-08 66.9 14.9 104 377-510 70-173 (511)
252 PF05978 UNC-93: Ion channel r 97.4 0.0033 7.2E-08 56.6 12.5 107 68-206 40-146 (156)
253 KOG3574 Acetyl-CoA transporter 97.3 0.081 1.8E-06 53.8 22.2 159 24-205 26-189 (510)
254 KOG2615 Permease of the major 97.2 0.0027 6E-08 64.3 10.7 151 30-210 261-413 (451)
255 KOG2325 Predicted transporter/ 97.2 0.013 2.7E-07 62.4 16.1 161 372-561 74-236 (488)
256 KOG0255 Synaptic vesicle trans 97.1 0.0041 8.9E-08 68.2 12.7 134 374-556 123-256 (521)
257 PF06779 DUF1228: Protein of u 97.1 0.0041 8.8E-08 49.4 8.6 73 43-117 6-78 (85)
258 KOG2816 Predicted transporter 96.9 0.0066 1.4E-07 64.9 10.6 151 26-208 237-389 (463)
259 PF06963 FPN1: Ferroportin1 (F 96.8 0.023 5E-07 60.1 14.4 154 30-205 259-412 (432)
260 COG3104 PTR2 Dipeptide/tripept 96.8 0.0024 5.2E-08 67.2 6.3 136 385-562 77-214 (498)
261 KOG2563 Permease of the major 96.7 0.017 3.7E-07 60.0 11.9 157 30-213 267-423 (480)
262 PRK03612 spermidine synthase; 96.4 0.14 3.1E-06 55.8 17.0 172 34-233 19-195 (521)
263 TIGR00926 2A1704 Peptide:H+ sy 96.3 0.027 5.9E-07 63.0 10.9 95 444-555 558-652 (654)
264 PF00854 PTR2: POT family; In 95.9 0.05 1.1E-06 56.8 10.3 124 411-560 3-129 (372)
265 PF03137 OATP: Organic Anion T 95.7 0.002 4.2E-08 70.5 -1.4 179 372-560 41-256 (539)
266 COG3202 ATP/ADP translocase [E 95.6 3.8 8.3E-05 43.6 25.9 170 25-210 23-209 (509)
267 PF06813 Nodulin-like: Nodulin 95.5 0.14 3.1E-06 49.9 11.2 90 408-510 65-154 (250)
268 KOG3626 Organic anion transpor 95.4 0.064 1.4E-06 59.6 9.2 105 452-560 238-349 (735)
269 PF05978 UNC-93: Ion channel r 94.9 0.33 7.2E-06 43.7 10.6 61 450-510 88-148 (156)
270 PF03092 BT1: BT1 family; Int 94.7 0.2 4.3E-06 53.5 10.4 114 412-556 62-177 (433)
271 PF03219 TLC: TLC ATP/ADP tran 94.2 10 0.00022 41.1 22.6 173 26-210 21-205 (491)
272 PF13000 Acatn: Acetyl-coenzym 92.6 17 0.00037 39.0 24.4 65 453-517 407-472 (544)
273 PF02487 CLN3: CLN3 protein; 91.9 0.61 1.3E-05 48.7 8.1 60 143-208 335-394 (402)
274 KOG3098 Uncharacterized conser 91.0 5.9 0.00013 42.3 14.5 116 75-204 289-407 (461)
275 KOG1479 Nucleoside transporter 90.3 26 0.00056 36.7 25.2 56 451-506 343-398 (406)
276 KOG0637 Sucrose transporter an 89.8 0.69 1.5E-05 48.5 6.1 164 328-508 33-200 (498)
277 PF05631 DUF791: Protein of un 89.8 17 0.00037 37.3 15.9 140 373-556 73-218 (354)
278 KOG3810 Micronutrient transpor 89.2 10 0.00022 38.7 13.5 96 450-553 325-420 (433)
279 TIGR00939 2a57 Equilibrative N 89.1 2.8 6.2E-05 44.7 10.5 58 142-205 371-428 (437)
280 TIGR00769 AAA ADP/ATP carrier 89.1 36 0.00079 36.7 20.6 59 454-512 131-190 (472)
281 TIGR00939 2a57 Equilibrative N 88.9 36 0.00077 36.4 32.4 58 450-507 371-428 (437)
282 KOG4332 Predicted sugar transp 88.9 3.5 7.7E-05 40.3 9.8 139 67-230 284-425 (454)
283 KOG3880 Predicted small molecu 87.3 19 0.00042 36.1 13.8 58 450-507 341-398 (409)
284 KOG3097 Predicted membrane pro 86.9 7.3 0.00016 39.3 10.8 118 25-175 25-142 (390)
285 COG0477 ProP Permeases of the 84.9 20 0.00044 34.6 13.5 60 452-511 95-156 (338)
286 KOG3574 Acetyl-CoA transporter 84.6 6.4 0.00014 40.6 9.3 98 457-555 139-237 (510)
287 PF01770 Folate_carrier: Reduc 77.6 79 0.0017 33.4 14.9 61 450-511 93-153 (412)
288 PF07672 MFS_Mycoplasma: Mycop 74.9 89 0.0019 30.7 15.1 58 183-240 4-66 (267)
289 PF07857 DUF1632: CEO family ( 73.6 39 0.00084 33.1 10.7 66 482-557 74-139 (254)
290 PF13000 Acatn: Acetyl-coenzym 73.3 26 0.00057 37.7 10.0 48 463-510 130-177 (544)
291 PF03219 TLC: TLC ATP/ADP tran 72.0 1.5E+02 0.0033 32.1 20.2 43 470-512 163-205 (491)
292 KOG2601 Iron transporter [Inor 60.8 2.2E+02 0.0047 29.8 21.9 73 32-105 30-102 (503)
293 COG5336 Uncharacterized protei 60.6 30 0.00065 28.6 5.8 30 76-105 53-82 (116)
294 PRK03612 spermidine synthase; 60.6 1.3E+02 0.0029 32.9 13.0 52 459-511 118-169 (521)
295 KOG1479 Nucleoside transporter 60.5 30 0.00065 36.2 7.4 147 32-202 245-396 (406)
296 PF01733 Nucleoside_tran: Nucl 55.1 3.7 8.1E-05 41.6 -0.2 58 142-205 247-304 (309)
297 KOG3810 Micronutrient transpor 53.6 89 0.0019 32.2 9.0 98 66-192 272-369 (433)
298 KOG4830 Predicted sugar transp 45.0 31 0.00068 33.7 4.2 65 33-99 21-94 (412)
299 PF11947 DUF3464: Protein of u 44.5 61 0.0013 28.9 5.7 49 143-200 97-145 (153)
300 PF09527 ATPase_gene1: Putativ 41.7 1.1E+02 0.0025 21.7 5.9 30 73-102 8-37 (55)
301 KOG1237 H+/oligopeptide sympor 29.8 1E+02 0.0023 34.1 6.0 66 140-211 455-520 (571)
302 PRK10263 DNA translocase FtsK; 29.4 4.6E+02 0.0099 32.1 11.2 18 197-214 143-160 (1355)
303 PF06800 Sugar_transport: Suga 27.5 6.1E+02 0.013 25.1 13.3 56 482-560 194-249 (269)
304 TIGR02230 ATPase_gene1 F0F1-AT 25.0 2.4E+02 0.0052 23.3 5.7 44 70-113 47-90 (100)
305 COG2119 Predicted membrane pro 24.5 5.1E+02 0.011 24.0 8.3 36 72-108 141-176 (190)
306 PF06645 SPC12: Microsomal sig 22.0 3.3E+02 0.0072 21.1 5.8 42 187-231 10-51 (76)
307 PF02694 UPF0060: Uncharacteri 20.7 2.4E+02 0.0052 23.5 4.9 49 65-114 54-102 (107)
308 PF06027 DUF914: Eukaryotic pr 20.5 9.3E+02 0.02 24.7 10.9 20 533-552 286-305 (334)
309 PF12832 MFS_1_like: MFS_1 lik 20.4 1.5E+02 0.0032 23.0 3.6 29 371-399 37-65 (77)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=388.92 Aligned_cols=545 Identities=50% Similarity=0.777 Sum_probs=479.2
Q ss_pred cccCCCCcccc---ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008020 13 VDYKGFPADRS---KTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLA 89 (581)
Q Consensus 13 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~la 89 (581)
.++...+..+. +++.|++...++..+.++++++|++..++..|+++.+|.+..++...+..+.......++++++++
T Consensus 18 ~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~la 97 (571)
T KOG1237|consen 18 VDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLA 97 (571)
T ss_pred eeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444443 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhc
Q 008020 90 DSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPC-QATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFG 168 (581)
Q Consensus 90 D~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~ 168 (581)
|.++||.+++.++.++..+|..++.++...+.+.|++| ...+...|+..+..+...++.++.+.++|.|+..|+..++.
T Consensus 98 D~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fG 177 (571)
T KOG1237|consen 98 DSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFG 177 (571)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhc
Confidence 99999999999999999999998888888899888887 33444578888888999999999999999999999999999
Q ss_pred ccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCCh
Q 008020 169 TDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSP 248 (581)
Q Consensus 169 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (581)
+|++++..+.++..+...++|+++..++|..++..+..+++++.||.+.|.++.++.++++++++...+.++++++.+++
T Consensus 178 adQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp 257 (571)
T KOG1237|consen 178 ADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSP 257 (571)
T ss_pred ccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCc
Confidence 99999766655666779999999999999999999999999999999999999999999999999999999998899999
Q ss_pred hHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHH
Q 008020 249 IVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKM 328 (581)
Q Consensus 249 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (581)
...+.+++..+.++++...|.++.............++.++.+++|++.+..+.+. ......++|+.|..+.+|+.|.
T Consensus 258 ~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~ 335 (571)
T KOG1237|consen 258 KTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKA 335 (571)
T ss_pred hhHHHHHHHHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhh
Confidence 99999999999999888877664443111222233445677889999887765433 1222668899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccceeeeecccccccccc-ccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCC-CC
Q 008020 329 VIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGN-FKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GF 406 (581)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~-~~ 406 (581)
+++.+++|.....++..+.|+.++++.|+..+++..++ +.+|+..+..+..+..++..|+.+++..|+.||..+++ ..
T Consensus 336 ~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~ 415 (571)
T KOG1237|consen 336 VLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGI 415 (571)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCC
Confidence 99999999999999999999999999999999999987 99999999999999999999999999999999998866 78
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhH
Q 008020 407 SNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKT 486 (581)
Q Consensus 407 ~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg 486 (581)
+.++++.+|+.+..+++...+..+.++.+....+ .+.+.+++.+|++++|+++|++|.+...+..++..+++|++||+
T Consensus 416 t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~--~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS 493 (571)
T KOG1237|consen 416 TPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL--LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKS 493 (571)
T ss_pred ChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc--cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHH
Confidence 8999999999999999999999988876665431 12234789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcC-CCCccchhhHHHHHHHHHHHHHHHHHHhhhccccccccC
Q 008020 487 MSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVG-ENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAK 563 (581)
Q Consensus 487 ~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 563 (581)
.+++++.+...+|+.++..++..+...+++ ..+|++ +++|.+++..+||+++....+....+.++.++++.++.+
T Consensus 494 ~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 494 VATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 999999999999999999999988876654 468999 899999999999999999999999999998888776553
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-39 Score=328.83 Aligned_cols=462 Identities=23% Similarity=0.306 Sum_probs=352.5
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHH
Q 008020 23 SKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMH----LPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRT 98 (581)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~ 98 (581)
..-+|||.++.++..++||+++||++...+..|+..+++ ++.+++..+.+.|.....+.++++||+|||++|+|++
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 445789999999999999999999999999999998887 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChH
Q 008020 99 IAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEK 178 (581)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~ 178 (581)
+..+.++.++|.++++.+. ......++++..++.+|.|+..|++.++++|++|+++++
T Consensus 95 I~lGail~~iGh~~L~~~~----------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 95 IVLGAILMAIGHLVLAISS----------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHHHhccc----------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 9999999999999998762 012667999999999999999999999999999999987
Q ss_pred HHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCC--hhH------
Q 008020 179 EKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGS--PIV------ 250 (581)
Q Consensus 179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------ 250 (581)
|..+++++|.+.|+|++++|++.+++.+++||+..|.++++....+++.++++++.........+ +..
T Consensus 153 ----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 153 ----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred ----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999988876654432221 110
Q ss_pred HHHHHHHHHHhhcccccCCCccccccCCccccccccCcccch-hccccccccCCCCCCCCccCCCCcccCcchhHhHHHH
Q 008020 251 HICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRC-LDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMV 329 (581)
Q Consensus 251 ~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (581)
.....+...+...- ..+. ..+.... .....+..+..+. .....+ ++.. +++|++
T Consensus 229 ~~~~~~~~~~~~~~-------~~~l----------~~~~~~~~~~~~~i~~~~~~~----~~~~~~---~~~~-~er~r~ 283 (498)
T COG3104 229 VLGGLVVMILAALL-------TLLL----------NQNTFSGVLLVISILIAIIYF----AEAFRS---PKVF-DERRRL 283 (498)
T ss_pred hHHHHHHHHHHHHH-------HHHH----------HHHHHHHHHHHHHHHHHHHHH----HHHhcc---CccH-HHHHHH
Confidence 00011111110000 0000 0000000 0000000000000 000111 2223 778899
Q ss_pred HHHHHHHHHHHHHHhhhccccceeeeec-cccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCh
Q 008020 330 IRLLPIWATTILFWSTYAQMITFSVEQA-TTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSN 408 (581)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~ 408 (581)
+..+.+++..++||+.+.|+++.+..+. +..+++..|+.+++++++++|.+.+++++|+.++++.|+.++.. .++.
T Consensus 284 ~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~---~ps~ 360 (498)
T COG3104 284 LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK---QPST 360 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC---CCCc
Confidence 9999999999999999999998665554 44556656689999999999999999999999999999877763 5888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHH
Q 008020 409 LQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMS 488 (581)
Q Consensus 409 ~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~ 488 (581)
+.++.+|+.+++.+++++........ ++....+.+|+++.|+++++||.+.+|+..+++.+.+|+++.+..
T Consensus 361 ~~KFalGl~l~g~~fl~l~~~~~~~~---------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ 431 (498)
T COG3104 361 PIKFALGLILAGLGFLILLLAGIWFG---------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFI 431 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc---------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHH
Confidence 89999999999999988876632210 112257889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccc
Q 008020 489 TGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWY 557 (581)
Q Consensus 489 ~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~ 557 (581)
++++.+.+..+..++..+++.... + .+..+......+|+..+...++..+......++.
T Consensus 432 ma~wfLt~a~~~~l~g~va~~~~~-~---------~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~ 490 (498)
T COG3104 432 MAMWFLTVAAGQTLGGQVAGLTAV-T---------DPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL 490 (498)
T ss_pred HHHHHHHHHHHHHhhceecccccc-c---------chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999998888762110 0 0001222234567777777776666666555543
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=4.7e-35 Score=315.18 Aligned_cols=462 Identities=18% Similarity=0.259 Sum_probs=328.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
++|||.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+.....+..+++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999993399999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
++.++.++++++.+ ....++++|.++++|.|+..|+..++++|++|+++++ |+
T Consensus 90 ~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~ 142 (489)
T PRK10207 90 VLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LD 142 (489)
T ss_pred HHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hh
Confidence 99999999887622 1234668999999999999999999999999987632 68
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccccccc--CCCCChhH--HHHHHH----
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYK--KCSGSPIV--HICQVV---- 256 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l---- 256 (581)
+++++++++.|+|..+||.+++++.++.||++.|+++.+..+++++.+...++.+++. ++++++.+ ......
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~ 222 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSV 222 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHH
Confidence 8999999999999999999999999999999999998776666666665555444332 12121111 110000
Q ss_pred --HHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH
Q 008020 257 --VAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP 334 (581)
Q Consensus 257 --~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 334 (581)
.......... ......... .........++.. ..+.++ ..+++.+....
T Consensus 223 ~~~~~~~~~~~~-~~~~~~~~~------~~~~i~~~~f~~~---------------------~~~~~~-~~r~r~~~~~~ 273 (489)
T PRK10207 223 VMIFVCAWLMHN-VEVANLVLI------VLSIVVTIIFFRE---------------------AFKLDK-TGRNKMFVAFV 273 (489)
T ss_pred HHHHHHHHHHhh-hhHHHHHHH------HHHHHHHHHHHHH---------------------HhcCCH-HHHHHHHHHHH
Confidence 0000000000 000000000 0000000000000 001112 23445555666
Q ss_pred HHHHHHHHHhhhccccceeeeecc-ccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHH
Q 008020 335 IWATTILFWSTYAQMITFSVEQAT-TMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIA 413 (581)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~ 413 (581)
++....++|..+.|....+..+.. ..+....|+.++++.++++|.+.+++..|+.+++.+|+.+|.. .+++..++.
T Consensus 274 l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~---~~~~~~k~~ 350 (489)
T PRK10207 274 LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK---DLSMPMKFT 350 (489)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC---CCCcHHHHH
Confidence 677788889999888665444332 3455555778888899999999999999999988777765543 467888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH
Q 008020 414 IGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL 493 (581)
Q Consensus 414 ~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~ 493 (581)
+|+++.+++++.+....... ...+ ...+.+++++.+++.++||.+..|+.++++.+.+|++++|.++|+++
T Consensus 351 ~G~~l~~~~~~~~~~~~~~~---~~~~------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~ 421 (489)
T PRK10207 351 LGMFLCSLGFLTAAAAGMWF---ADAQ------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF 421 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhh---cCCC------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence 99999988877654332110 0001 13567888899999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020 494 TTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRK 560 (581)
Q Consensus 494 ~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 560 (581)
+.+.+|+.+|..++..... . ....++. .....+.++|...++.+++..+++++..++.++.
T Consensus 422 l~~~ig~~lg~~l~~~~~~-~-~~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 422 LTQAAAFLLGGYVATFTAV-P-DNITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHhcc-c-cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765421 0 0000010 0112346778888888888877777776655544
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=3.4e-34 Score=308.30 Aligned_cols=452 Identities=15% Similarity=0.229 Sum_probs=325.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGT--MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIF 102 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~ 102 (581)
.+++|.++.+++.++++++++|++.++++.|++++ +|++..+++.+.+.+.++..++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 46788999999999999999999999999999887 9999999999999999999999999999999933999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhH
Q 008020 103 ATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ 182 (581)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (581)
.++.+++.++++++. +...++++|.+.++|.|+..|+..++++|++|+++.. +
T Consensus 86 ~~~~~~g~~~~~~~~------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~ 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---R 138 (475)
T ss_pred HHHHHHHHHHHHhcc------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---c
Confidence 999999998887652 2566888999999999999999999999999875411 2
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhH----HH-HH--H
Q 008020 183 MAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIV----HI-CQ--V 255 (581)
Q Consensus 183 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--~ 255 (581)
|++++++++.+.|+|..+||.+++++.++.||++.|.++++..+++++.+...++.+++.++++++.+ +. .+ .
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA 218 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence 88899999999999999999999999998999999998887766666666555544433222111110 00 00 0
Q ss_pred ----HHHHHhhcccccCCCccccccCCccccccccCccc-chhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHH
Q 008020 256 ----VVAARKKRKVELPSSTASLYEDYPEESRIQHTYQF-RCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVI 330 (581)
Q Consensus 256 ----l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (581)
+....+..... .+.... + ........ .+...... ...+ ..+. .++++..
T Consensus 219 ~~~~~~~~~~~~~~~-~~~~~~-------~-~~~~~~~~~~~~~~~~~------------~~~~----~~~~-~~~~~~~ 272 (475)
T TIGR00924 219 LLAALALVFFCAWLM-HHVVIA-------N-ILLMTVTLAVIIFFFRL------------AFKP----RLDA-VARNKMY 272 (475)
T ss_pred HHHHHHHHHHHHHHH-hccHHH-------H-HHHHHHHHHHHHHHHHH------------HHhc----cCCH-HHHhHHH
Confidence 00000000000 000000 0 00000000 00000000 0000 0111 2234444
Q ss_pred HHHHHHHHHHHHHhhhccccceee-eeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChh
Q 008020 331 RLLPIWATTILFWSTYAQMITFSV-EQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNL 409 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~ 409 (581)
..+.++....++|..+.|..+.+. ++....+.+.+++.++++++.++|.+.+++.+|+.+++..++.+|.. .++..
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~---~~~~~ 349 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK---DPTTP 349 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC---CCCcH
Confidence 567778888899999999887443 33344566667788999999999999999999999977656655422 35666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHH
Q 008020 410 QLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMST 489 (581)
Q Consensus 410 ~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~ 489 (581)
.++.+|+++.+++++.+++.... .+ .+...+++++++.+++.++||.+..|..++++.+.+|+++||+++
T Consensus 350 ~k~~~G~~l~~~~~~~~~~~~~~----~~------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~ 419 (475)
T TIGR00924 350 LKFTLGMLFCGASFLTFAASIWF----AD------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML 419 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----cC------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 77899999999998887765211 11 112468889999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 008020 490 GLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK 558 (581)
Q Consensus 490 gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~ 558 (581)
|++.....+|..+++.+...... ..+..++|...++.+++..+++++..+..+
T Consensus 420 g~~~l~~~~g~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 420 GMWFLAQAMGSLLGGYLATFGAV----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765421 112345677777777777777776655443
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=4.9e-34 Score=302.93 Aligned_cols=417 Identities=18% Similarity=0.241 Sum_probs=308.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
+|+|.++.++..++++++++|++..+++.|+++.+|++..+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+++..... ....++++..+..+|.|...++.+++++|++|+++++ |.+
T Consensus 86 ~~lg~lll~~~~~-----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~s 138 (493)
T PRK15462 86 MAIGHVVLGASEI-----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDG 138 (493)
T ss_pred HHHHHHHHHHhhc-----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccc
Confidence 9998876654311 1233555666677888888899999999999987433 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCC-CCChh--HHHHHHH-----H
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKC-SGSPI--VHICQVV-----V 257 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l-----~ 257 (581)
++++++...|+|+.++|.+++++.+..||++.|.++++..+++++.+...++.+.+... .+++. ++..... .
T Consensus 139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (493)
T PRK15462 139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV 218 (493)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887777777766665544432211 11111 1100000 0
Q ss_pred H-----HHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHH
Q 008020 258 A-----ARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRL 332 (581)
Q Consensus 258 ~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (581)
. ........ + .......-...+.... ........+ .+.+++|++..+
T Consensus 219 ~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~er~r~~~~ 270 (493)
T PRK15462 219 LLVATPALITVLFW---K----------------EWSVYALIVATIIGLG--------VLAKIYRKA-ENQKQRKELGLI 270 (493)
T ss_pred HHHHHHHHHHHHHH---H----------------HHHHHHHHHHHHHHHH--------HHHHHHHhc-CCHHHHhhHHHH
Confidence 0 00000000 0 0000000000000000 000000001 223567888888
Q ss_pred HHHHHHHHHHHhhhccccceeeee-ccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHH
Q 008020 333 LPIWATTILFWSTYAQMITFSVEQ-ATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQL 411 (581)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~ 411 (581)
+.++....+||+.+.|.++.+... .++.+++++|+.+|+++++++|.+.+++++|+..++..++.+|.. .++...|
T Consensus 271 ~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~---~~s~~~K 347 (493)
T PRK15462 271 VTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR---TVRIWGK 347 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC---CCCcHHH
Confidence 889999999999999988754333 367888888999999999999999999999999998877654322 4688889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH
Q 008020 412 IAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL 491 (581)
Q Consensus 412 l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi 491 (581)
+.+|+++++++++++.+..... +.++ ..+.+|++..++++++||.+..|...+.+.+.+|++.||+.||+
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~----~~~~------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~ 417 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWS----AMYG------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGI 417 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc----CCCC------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHH
Confidence 9999999999998887653221 1111 46788899999999999999999999999999999999999999
Q ss_pred HHHHH-hHHHHHHHHHHHHH
Q 008020 492 FLTTL-SLGFFFSSLLVSIV 510 (581)
Q Consensus 492 ~~~~~-~lg~~~g~~~~~~i 510 (581)
+.... .+|+.++..+....
T Consensus 418 w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 418 YMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 98744 68877777766644
No 6
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=1.1e-32 Score=298.17 Aligned_cols=458 Identities=18% Similarity=0.223 Sum_probs=321.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
.+++|.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+.......++++|+++||++|||+++.++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999988888777777788999999994499999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+..++.++++++.. ....+++++.++++|.|...++..++++|++|+++.+ |+
T Consensus 97 ~~~ig~~l~~~~~~-----------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~ 149 (500)
T PRK09584 97 VLAIGYALVAWSGH-----------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LD 149 (500)
T ss_pred HHHHHHHHHHHhcc-----------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hh
Confidence 99999888876521 1455778899999999999999999999999876533 66
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccccccc--CCCCChhH--HHH----HHH
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYK--KCSGSPIV--HIC----QVV 256 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~----~~l 256 (581)
+++++++++.++|..+||.+++++.++.||++.|++..+..+++++.+.+..+..++. ++..++.+ ... ...
T Consensus 150 ~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (500)
T PRK09584 150 GAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVV 229 (500)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHH
Confidence 7889999999999999999999999999999999988876666665554444333222 11111111 100 000
Q ss_pred HHH-HhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCc-ccCcchhHhHHHHHHHHH
Q 008020 257 VAA-RKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWT-LCPVTRVEEVKMVIRLLP 334 (581)
Q Consensus 257 ~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 334 (581)
... ......+.++..... . ......... . .++ ....++ .++++.+..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~----------~--~~~~~~~~~~-~~~~~~~~~~~ 280 (500)
T PRK09584 230 ALIAIATWLLHNQEIARMA---------------L-GVVALGIVV----------I--FGKEAFAMKG-AARRKMIVAFI 280 (500)
T ss_pred HHHHHHHHHHhcchHHHHH---------------H-HHHHHHHHH----------H--HHHHHhhcCH-HHHHHHHHHHH
Confidence 000 000000000000000 0 000000000 0 000 001122 34455556666
Q ss_pred HHHHHHHHHhhhccccceeeeec-cccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHH
Q 008020 335 IWATTILFWSTYAQMITFSVEQA-TTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIA 413 (581)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~ 413 (581)
+++...++|+.+.|.++.+..+. ...+.+..++.+++++++++|.+.+++.+|+.+++..|+.+| .+..+++.
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r------~~~~~~~~ 354 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR------LPMPHKFA 354 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC------CCcHHHHH
Confidence 77888899999999988766544 234555667788899999999999999999998876544433 44677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH
Q 008020 414 IGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL 493 (581)
Q Consensus 414 ~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~ 493 (581)
+|+++.+++++.+...... .+. ....+.+++++.+++.++||.+..|...+++.+.+|+++||+++|++.
T Consensus 355 ~G~~l~~l~f~~l~~~~~~----~~~------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~ 424 (500)
T PRK09584 355 IGMVLCSGAFLVLPLGAKF----AND------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF 424 (500)
T ss_pred HHHHHHHHHHHHHHHHHHh----cCC------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 9999999999887765321 011 114667789999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020 494 TTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRK 560 (581)
Q Consensus 494 ~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 560 (581)
+...+|+.++..+...+.. .....++. ...+++.++|...++++++..++.+...++.++.
T Consensus 425 l~~a~g~~~~g~~~~~~~~--~~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 425 LTTAGAALIAGYVANLMAV--PDNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877754310 00000000 1112356778888877776666666666655543
No 7
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.94 E-value=4.3e-24 Score=225.54 Aligned_cols=376 Identities=12% Similarity=0.034 Sum_probs=248.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
+.+|.+..+.+..+...++.....+.++.|+++++|.+..+.+++.+++.++..+++++.|+++||+ ||||++..+.++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~ 90 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG 90 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence 3355778888899999999998999999999999999999999999999999999999999999999 999999999988
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+.+.++...++ ....+...+++.|+++|++.+...+...+++.|.+|+++ |++
T Consensus 91 ~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (399)
T PRK05122 91 CALSGLLYLLAGLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGR 148 (399)
T ss_pred HHHHHHHHHHhhhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hcc
Confidence 8887766554421110 001236678999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV 265 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (581)
++++.....++|..+||.+++++.+..||+..+++..+..++..... .+ .+..++++++.
T Consensus 149 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~---------------- 208 (399)
T PRK05122 149 VISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGER---------------- 208 (399)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccc----------------
Confidence 99999888999999999999999888999998876655433322221 11 11000000000
Q ss_pred ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHh
Q 008020 266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWS 344 (581)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~ 344 (581)
.++ .+..|+...... .......+..
T Consensus 209 -----------------------------------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 234 (399)
T PRK05122 209 -----------------------------------------------LPF-------RRVLGRVWPYGMGLALASIGFGT 234 (399)
T ss_pred -----------------------------------------------hhH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000011111000 0011111111
Q ss_pred hhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 008020 345 TYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA 424 (581)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~ 424 (581)
.....+.++..+ +. . ..........++.++..++.+++.+|..+| +.+..+..+.+++++
T Consensus 235 ~~~~~~~~~~~~--~~--~------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~ 294 (399)
T PRK05122 235 IATFITLYYAAR--GW--D------GAALALTLFGVAFVGARLLFGNLINRLGGL----------RVAIVSLLVEILGLL 294 (399)
T ss_pred HHHHHHHHHHHc--cc--c------cchHHHHHHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHH
Confidence 111111111110 00 0 111222233444455555556655443332 225555666666655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHH
Q 008020 425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSS 504 (581)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~ 504 (581)
.+... .+.+.+++..++.|++.+...|.......+..|++.||+++|+++....+|..+++
T Consensus 295 ~~~~~-------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 355 (399)
T PRK05122 295 LLWLA-------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITG 355 (399)
T ss_pred HHHHh-------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 12334455667889998888888888888999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008020 505 LLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLC 553 (581)
Q Consensus 505 ~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~ 553 (581)
.+.+.+.+. .+++..|++.+++.++++++.++.
T Consensus 356 ~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 356 PLAGLVASW----------------FGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHH----------------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 888876531 123566777777777766655544
No 8
>PRK03545 putative arabinose transporter; Provisional
Probab=99.94 E-value=4.6e-24 Score=224.67 Aligned_cols=372 Identities=14% Similarity=0.067 Sum_probs=241.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
|..++.+.+..++.....+...+.+ +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 3345555665555555555433334 456779999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.+++.++. +.+.+++.|+++|++.+...+...+++.|++|+++ |++++
T Consensus 86 ~~~~~~~~~~------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 135 (390)
T PRK03545 86 ASHVLSALAW------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQAL 135 (390)
T ss_pred HHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHH
Confidence 9998888772 38889999999999999888999999999999988 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL 267 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (581)
+++....++|..++|.+++.+.+..|||+.|++.++..++.........++.+++ ++++.+. .
T Consensus 136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~----~----------- 198 (390)
T PRK03545 136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS----L----------- 198 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH----H-----------
Confidence 9999999999999999999998889999999988776555544433322221110 0000000 0
Q ss_pred CCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHH-HHHHHHHHHHHhhh
Q 008020 268 PSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRL-LPIWATTILFWSTY 346 (581)
Q Consensus 268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 346 (581)
.+..+.+.+... ..........+...
T Consensus 199 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (390)
T PRK03545 199 -----------------------------------------------------PLLFRRPALVSLYLLTVVVVTAHFTAY 225 (390)
T ss_pred -----------------------------------------------------HHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 000000111111 11111111112222
Q ss_pred ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 008020 347 AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASA 426 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~ 426 (581)
...+.++ ....+.+.. ..+.+.....+..++...+.+++.+|..+| .+..+..+..++...+
T Consensus 226 ~~~~~~l-~~~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----------~~~~~~~~~~~~~~~l 287 (390)
T PRK03545 226 SYIEPFV-QQVAGLSEN------FATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----------FLLIAIALLLVCLLLL 287 (390)
T ss_pred HHHHHHH-HHhcCCCcc------HHHHHHHHHHHHHHHHHHHHHHHhhccchh-----------HHHHHHHHHHHHHHHH
Confidence 1111111 110111111 122233334445555555555554332211 1344444444443333
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 008020 427 SVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL 506 (581)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~ 506 (581)
... ..+.+.+++..++.|++.+...+.....+.+..| +.|++++|+++....+|..+|+.+
T Consensus 288 ~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~ 348 (390)
T PRK03545 288 LPA------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALL 348 (390)
T ss_pred HHH------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1123445556677888887777888888888877 588999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 008020 507 VSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCA 554 (581)
Q Consensus 507 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~ 554 (581)
.|.+.+. .++...|+..+.+.++++++.++..
T Consensus 349 ~G~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 349 GNQVSLH----------------LGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHhc----------------cChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9877531 2235667777888888777776664
No 9
>PRK12382 putative transporter; Provisional
Probab=99.94 E-value=1e-23 Score=222.07 Aligned_cols=374 Identities=9% Similarity=0.027 Sum_probs=244.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
.+.++.+.+..++..++.....+.+|.|+.+++|+|..+.+++.+.+.++..++++++|+++||+ ||||++..+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence 34677777888888888888889999999999999999999999999999999999999999998 99999999988777
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.+........+. ....+.+.++++|+++|++.+...+...+++.|.+|+++ |++++
T Consensus 93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~ 150 (392)
T PRK12382 93 LAGLAYLLAAILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVM 150 (392)
T ss_pred HHHHHHHhhhcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhh
Confidence 66543322211110 011347789999999999999888888899999999988 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL 267 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (581)
++...+.++|..++|.+++++.+..||++.+.+..+..++... +.. +.++.+++++...
T Consensus 151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~----------------- 209 (392)
T PRK12382 151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERP----------------- 209 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCc-----------------
Confidence 9999999999999999999998888999876655433222221 111 1111000000000
Q ss_pred CCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHH-HHHHHHHHHHHhhh
Q 008020 268 PSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRL-LPIWATTILFWSTY 346 (581)
Q Consensus 268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 346 (581)
++ + +..|..... .........+....
T Consensus 210 ----------------------------------------------~~---~----~~~~~~~~~~~~~~l~~~~~~~~~ 236 (392)
T PRK12382 210 ----------------------------------------------SL---W----SVVGLIWKPGLGLALQGVGFAVIG 236 (392)
T ss_pred ----------------------------------------------hH---H----HHHHHHHHhHHHHHHHHHHHhHHH
Confidence 00 0 000000000 00000111111111
Q ss_pred ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 008020 347 AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASA 426 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~ 426 (581)
...+.++ .+ .+. . ..........++.++..++.+++.+|..+|+. +..+..+.+++++.+
T Consensus 237 ~~~~~~~-~~-~~~-------~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~----------~~~~~~~~~~~~~~~ 296 (392)
T PRK12382 237 TFVSLYF-AS-KGW-------A-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV----------AIVSLLVETVGLLLL 296 (392)
T ss_pred HHHHHHH-Hh-cCC-------c-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee----------hHHHHHHHHHHHHHH
Confidence 1111111 10 000 0 11122223344455666667777655544321 455666666665544
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 008020 427 SVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL 506 (581)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~ 506 (581)
... .+.+...+..++.+++.+...|.......+.+|++.||+++|+++....+|..+++.+
T Consensus 297 ~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~ 357 (392)
T PRK12382 297 WLA-------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPL 357 (392)
T ss_pred HHc-------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 1223445566778888888888888889999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008020 507 VSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLC 553 (581)
Q Consensus 507 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~ 553 (581)
.+.+.+.. ++...|.+.+++.+++.++.++.
T Consensus 358 ~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 358 AGMLATSF----------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 98775421 23556777777777776666544
No 10
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.94 E-value=4.4e-24 Score=237.26 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=132.5
Q ss_pred HHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008020 49 AVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQ 128 (581)
Q Consensus 49 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (581)
...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.++++++.
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~----------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ----------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 34455567778999999999999999999999999999999998 999999999999888888887762
Q ss_pred CCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020 129 ATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI 208 (581)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 208 (581)
+.+.++++|++.|+|.|+..+...++++|.+|++. |++.+++......+|.++++.++..+
T Consensus 254 -------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 254 -------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999988 99999999999999999998877655
Q ss_pred hcc-------------cchhhHHHHHHHHHHHHHHHHHHc
Q 008020 209 QDE-------------VGRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 209 ~~~-------------~g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
... .+||+.|++.++..++.++..++.
T Consensus 315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l 354 (742)
T TIGR01299 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354 (742)
T ss_pred HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 432 368898888777666655554444
No 11
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.93 E-value=7.5e-24 Score=223.68 Aligned_cols=348 Identities=14% Similarity=0.083 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG 111 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 111 (581)
+.++...++..++.+.+.+.++.|+++++|++..+.+.+.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999998 999999999999999888
Q ss_pred HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020 112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191 (581)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 191 (581)
++.... +.+.+++.|++.|++.+...|...+++.|.+|+++ |++++++.+
T Consensus 92 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIAH------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLM 141 (400)
T ss_pred HHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence 887652 27778999999999998888999999999999888 999999999
Q ss_pred HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCc
Q 008020 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSST 271 (581)
Q Consensus 192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~ 271 (581)
...++|..+||.+++++. .+||++.|++.++..++..++.....++.+. ++..++..
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~--------------------- 198 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR--------------------- 198 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH---------------------
Confidence 999999999999999998 6799999998776555443332222221100 00000000
Q ss_pred cccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020 272 ASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMIT 351 (581)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (581)
..+ + ....+ +.++....................+
T Consensus 199 -----------------------------------------~~~---~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p 232 (400)
T PRK11646 199 -----------------------------------------EGM---T-RVLRD-KRFVTYVLTLTGYYMLAVQVMLMLP 232 (400)
T ss_pred -----------------------------------------HHH---H-HHHcC-chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 0 00001 1111111111111100000111111
Q ss_pred eeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008020 352 FSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEV 431 (581)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~ 431 (581)
.+.....+ . ....+.+.....+..+......++.. +|+ .+..+.+..+.++.++++..++...
T Consensus 233 ~~~~~~~~-~------~~~~g~l~~~~~~~~~~~~~~~~~~~----~~r-----~~~~~~~~~~~~~~~~~~~~l~~~~- 295 (400)
T PRK11646 233 IMVNDIAG-S------PSAVKWMYAIEACLSLTLLYPIARWS----EKR-----FRLEHRLMAGLLIMSLSMFPIGMVS- 295 (400)
T ss_pred hhHHhhcC-C------chHHHHHHHHHHHHHHHHHHHHHHHH----HHh-----cchhHHHHHHHHHHHHHHHHHHHhh-
Confidence 11111000 0 11112222223332222222223332 221 1122335566666666665554331
Q ss_pred HHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020 432 KRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK 511 (581)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~ 511 (581)
+.+.++...++.+++.+...|...+++.+.+|++.||+++|++++...+|..+|+.+.|.+.
T Consensus 296 ------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~ 357 (400)
T PRK11646 296 ------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLF 357 (400)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHH
Confidence 22334444566788888888999999999999999999999999999999999999999887
Q ss_pred hhh
Q 008020 512 AAT 514 (581)
Q Consensus 512 ~~~ 514 (581)
+.+
T Consensus 358 ~~~ 360 (400)
T PRK11646 358 DLG 360 (400)
T ss_pred HHH
Confidence 543
No 12
>PRK10054 putative transporter; Provisional
Probab=99.93 E-value=2.9e-24 Score=226.47 Aligned_cols=175 Identities=13% Similarity=0.135 Sum_probs=153.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
+.+|+++.+.+..++...+.+.+.++++.|+++++|++..+.+++.+.+.+...+++++.|+++||+ |||+++.++.+.
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3466788999999999999999999999999999999999999999999999999999999999998 999999999988
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.++..+++ +.+.+++.+.+.+.+.+...++..++..|.+|+++ |++
T Consensus 83 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 132 (395)
T PRK10054 83 FASGFIAIPLVN------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTK 132 (395)
T ss_pred HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHH
Confidence 888887777662 26667778888888877778889999999999888 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIF 232 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 232 (581)
++++.+...++|..++|.+++++.+ .+|+.+|++.+++.++.++..
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 689999998777666654433
No 13
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.6e-23 Score=211.51 Aligned_cols=379 Identities=15% Similarity=0.109 Sum_probs=265.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
+..+..++.+.+..|+...+=+.....+|. +.+++|.|..++|++++.|.++..++.|+...++||+ .||++++..+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 344667888999999999888888877765 6779999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+++++.++++++ |+ ++.++++|++.|+..|.+++...++..++.|+++ |+
T Consensus 87 lFi~~n~l~alA---p~---------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~ 136 (394)
T COG2814 87 LFIVSNLLSALA---PS---------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RG 136 (394)
T ss_pred HHHHHHHHHHHh---cc---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hh
Confidence 999999999999 33 9999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCC-CChhHHHHHHHHHHHhhc
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCS-GSPIVHICQVVVAARKKR 263 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 263 (581)
+++++...+..++..+|..++.++.+.+|||..|++..++.+++++..+...| .+..+++ +.+.++..+
T Consensus 137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~~~~~~~--------- 206 (394)
T COG2814 137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSLPGPLRTLLR--------- 206 (394)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCCcchhHHHH---------
Confidence 99999999999999999999999999999999999888777777766665544 0011110 011110000
Q ss_pred ccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHH-HHHHHHHHHHHHH
Q 008020 264 KVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMV-IRLLPIWATTILF 342 (581)
Q Consensus 264 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 342 (581)
..+++++ ..+....+.....
T Consensus 207 -----------------------------------------------------------~l~~p~v~~~l~~t~l~~~g~ 227 (394)
T COG2814 207 -----------------------------------------------------------LLRRPGVLLGLLATFLFMTGH 227 (394)
T ss_pred -----------------------------------------------------------HhcCchHHHHHHHHHHHHcch
Confidence 0011111 1222223333334
Q ss_pred HhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHH
Q 008020 343 WSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALG 422 (581)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~ 422 (581)
+..|.+..+++... .+.+ ....++.....+++.++...+.+++.|| ..| +.+.....++.+.
T Consensus 228 F~~ftYi~P~L~~v-~g~s------~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~----------~~l~~~~~l~a~~ 289 (394)
T COG2814 228 FALYTYIRPFLESV-AGFS------VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR----------RALIAALLLLALA 289 (394)
T ss_pred hhhHHhHHHHHHHc-cCCC------HhHHHHHHHHHHHHHHHHHHHHhhhccc-cch----------hHHHHHHHHHHHH
Confidence 44444433322211 1111 1112334455666777777777777654 221 2245555666666
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHH
Q 008020 423 MASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFF 502 (581)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~ 502 (581)
++.+.+.. .+.+..+...++.++.........+....+.. ++.++.+++++..+.++|..+
T Consensus 290 ~l~l~~~~------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~ 350 (394)
T COG2814 290 LLALTFTG------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIAL 350 (394)
T ss_pred HHHHHHhc------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHH
Confidence 65555442 22233444445566655544455555555422 588999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccc
Q 008020 503 SSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWY 557 (581)
Q Consensus 503 g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~ 557 (581)
|..+.|.+.+. .++....++.+.+.+++.++.+...++.
T Consensus 351 GA~lGG~v~~~----------------~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 351 GAALGGLVLDA----------------LGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHh----------------hchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988642 3345567777777777777776665443
No 14
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.93 E-value=6.2e-24 Score=225.77 Aligned_cols=395 Identities=13% Similarity=0.045 Sum_probs=246.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.+..++...++..++.......+|.+.+ +++.+..+.+++.+...++..++.++.|+++||+ |||+++..+.++..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~ 95 (417)
T PRK10489 18 AFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLG 95 (417)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHH
Confidence 3445555666777766666666776654 5677999999999999999999999999999999 9999999888777776
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.++......... .+.+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++
T Consensus 96 ~~~~~~~~~~~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 96 FIGLALNAFLPE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHHHHHcCC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 665543211011 236778889999999988888888999999999887 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCC
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPS 269 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ 269 (581)
.+...++|..+||.+++.+.+..+|++.|++..+..+++.+.....++..++++++.++.....
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------- 214 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLL---------------- 214 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHH----------------
Confidence 9999999999999999999888899999988776665554443332211000000000000000
Q ss_pred CccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 008020 270 STASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQM 349 (581)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (581)
..+ +...+.+.+.......+............
T Consensus 215 -------------------------------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T PRK10489 215 -------------------------------------------AGF-----RFLLASPVVGGIALLGGLLTMASAVRVLY 246 (417)
T ss_pred -------------------------------------------HHH-----HHHHcChHHHHHHHHHHHHHHHHhHHHhh
Confidence 000 00000011111111111111111111111
Q ss_pred cceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008020 350 ITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVV 429 (581)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~ 429 (581)
+. +..+..+.+ ....+.+.....++.++...+.+++. +|.. ..+.+..+.++.+++++.+...
T Consensus 247 p~-~~~~~~g~~------~~~~g~~~~~~~~g~~ig~~~~~~l~----~~~~------~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T PRK10489 247 PA-LADEVWQMG------AAQIGLLYAAVPLGAALGALTSGWLA----HSAR------PGLLMLLSTLGSFLAVGLFGLM 309 (417)
T ss_pred HH-HHHhccCCC------hhHhHHHHHHHHHHHHHHHHHHHHhh----hccC------cchHHHHHHHHHHHHHHHHHcc
Confidence 11 111101111 11122333444455555555555443 2211 1122555666666665544322
Q ss_pred HHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHH
Q 008020 430 EVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSI 509 (581)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~ 509 (581)
.+++......++.|++.+...+..++++.+..|++.||+++|+++..+.+|..+|+.+.|.
T Consensus 310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~ 370 (417)
T PRK10489 310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG 370 (417)
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 1233445566677888888778888999999999999999999999999999999999998
Q ss_pred HHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccccccCCchh
Q 008020 510 VKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVPE 567 (581)
Q Consensus 510 i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 567 (581)
+.+..+ ....++..++..++..++.+...+++|++++||.++
T Consensus 371 l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 371 LGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 764221 133455566666665666666667888887777654
No 15
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.93 E-value=2.6e-23 Score=220.09 Aligned_cols=356 Identities=13% Similarity=0.064 Sum_probs=229.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
.+|..+.+.....+++.+..+..-...| .+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence 4455666666677777776666555555 45668999999999999999999999999999999998 999999999988
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+++ |++
T Consensus 90 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 139 (406)
T PRK11551 90 FGLFSLATAQAW------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT 139 (406)
T ss_pred HHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 888887776662 27788999999999999999999999999999888 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV 265 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (581)
++++.+...++|..+++.+++.+.+..+|++.|++..++.++.........++.++..++.....
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------- 204 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK--------------- 204 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch---------------
Confidence 99999999999999999999888888899999988766544444333332222111000000000
Q ss_pred ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHHHh
Q 008020 266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILFWS 344 (581)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 344 (581)
+ . ....+. . + +.. + .++....... +......+.
T Consensus 205 ----~----------------~--~~~~~~--~----------------~---~~~--~-~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK11551 205 ----Q----------------R--APVLRA--L----------------F---GEG--R-ATATLLLWISYFFTLIVLYF 238 (406)
T ss_pred ----h----------------h--hhhHHH--H----------------h---hhh--h-hhHHHHHHHHHHHHHHHHHH
Confidence 0 0 000000 0 0 000 0 0111111111 111111222
Q ss_pred hhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 008020 345 TYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA 424 (581)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~ 424 (581)
...+.+.+... .+.+ ....+.......++.++...+.+++.+|+.+|+ .+..+.+...++++
T Consensus 239 ~~~~~p~~~~~--~g~s------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~~~~~~~~~~~~~~ 300 (406)
T PRK11551 239 LLNWLPSLLVG--QGLS------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR----------VVLLIYAGILASLA 300 (406)
T ss_pred HHHHHHHHHHh--CCCC------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHH
Confidence 21111111111 1111 111233344445555666666666666554432 13334444444433
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHH
Q 008020 425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSS 504 (581)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~ 504 (581)
.+... .+.+.+....++.+++.....+..+++..|.+|++.||+++|+.+....++..+++
T Consensus 301 ~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 361 (406)
T PRK11551 301 ALAAA-------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGP 361 (406)
T ss_pred HHHhc-------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHh
Confidence 33322 12233444556677777777888899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008020 505 LLVSIVK 511 (581)
Q Consensus 505 ~~~~~i~ 511 (581)
.+.|.+.
T Consensus 362 ~~~g~l~ 368 (406)
T PRK11551 362 LLAGQLL 368 (406)
T ss_pred hhHhhhh
Confidence 9998764
No 16
>PRK10504 putative transporter; Provisional
Probab=99.93 E-value=4.6e-23 Score=222.60 Aligned_cols=407 Identities=10% Similarity=0.005 Sum_probs=243.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
.+.+|.+....++..+..+.+.+.+|.+.+ ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 446788888899999888888888888775 6999999999999999999999999999999999 99999999988888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.+++.++. +.+.++++|+++|++.+...|...+++.|.+|+++ |++++
T Consensus 87 ~~~~~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 136 (471)
T PRK10504 87 LGSLFCALSG------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAM 136 (471)
T ss_pred HHHHHHHHhC------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 8887776652 27778999999999999999999999999999887 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL 267 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (581)
++.+...++|..+||.+++++.++.||++.|++......+..+......++.+.++.+.+................. .
T Consensus 137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--~ 214 (471)
T PRK10504 137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLA--L 214 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999999877665555544444333322221111111111100000000000 0
Q ss_pred CCCccccccCCccccccccCcccc-hhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhh
Q 008020 268 PSSTASLYEDYPEESRIQHTYQFR-CLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTY 346 (581)
Q Consensus 268 p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 346 (581)
.+.....+. . ......-... ..-.....+++... ....+. +..+.|.+...+...+.........
T Consensus 215 ~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~l~~~~~~~~~l~~~~~~~~~~~~~ 280 (471)
T PRK10504 215 DGSKGLGLS--P--LAIAGLVAVGVVALLLYLLHARNNN----RALFSL------KLFRTRTFSLGLAGSFAGRIGSGML 280 (471)
T ss_pred hcCCcCCcc--h--HHHHHHHHHHHHHHHHHHHHHhcCC----CCccCH------HHhcccchHHHHHHHHHHHHHHHHH
Confidence 000000000 0 0000000000 00000000000000 000011 1111122222211111111111111
Q ss_pred ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 008020 347 AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASA 426 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~ 426 (581)
....+++.....+.+ ....+.......+..+...++.+++.+|+.+| +.+..+..+..+....+
T Consensus 281 ~~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~----------~~~~~~~~~~~~~~~~~ 344 (471)
T PRK10504 281 PFMTPVFLQIGLGFS------PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR----------RVLVATTLGLALVSLLF 344 (471)
T ss_pred HHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHHHHHH
Confidence 111111111100111 11122223333344444445566665444333 22555666555554444
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 008020 427 SVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL 506 (581)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~ 506 (581)
..... ..+.+.+...+++.|++.+...+..+..+.+.+|++.+|+++|++++.+.+|..+|+.+
T Consensus 345 ~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i 408 (471)
T PRK10504 345 MLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTI 408 (471)
T ss_pred Hhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHH
Confidence 43210 11222333456677888888899999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 008020 507 VSIVKAAT 514 (581)
Q Consensus 507 ~~~i~~~~ 514 (581)
.+.+.+..
T Consensus 409 ~g~ll~~~ 416 (471)
T PRK10504 409 AGLLLGLF 416 (471)
T ss_pred HHHHHHHh
Confidence 99876554
No 17
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.93 E-value=2.4e-23 Score=225.19 Aligned_cols=407 Identities=11% Similarity=0.048 Sum_probs=231.8
Q ss_pred cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCc
Q 008020 60 MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHAS 139 (581)
Q Consensus 60 l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (581)
++++..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.+++++....-. .....+
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~------------~~~~~~ 116 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFT------------SIGPDN 116 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccc------------cccccc
Confidence 488999999999999999999999999999998 9999999999998888877765311000 000011
Q ss_pred hhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhh--------cc
Q 008020 140 GIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQ--------DE 211 (581)
Q Consensus 140 ~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~ 211 (581)
......++++|+++|++.|+..+...++++|++|+++ |++++++......+|..+++.+++.+. +.
T Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
T PRK10077 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190 (479)
T ss_pred hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 1235678899999999999999999999999999998 999999999999999999987766543 35
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccc
Q 008020 212 VGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFR 291 (581)
Q Consensus 212 ~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 291 (581)
.|||++|++.++..++..+..++..+..+....+++ .++..+..... .+ ++... +.. .+..+
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~~~~~~~~~~-----~~-~~~~~---------~~~--~~~~~ 252 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK-QEQAEGILRKI-----MG-NTLAT---------QAL--QEIKH 252 (479)
T ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC-HHHHHHHHHHH-----cC-ChhHH---------HHH--HHHHH
Confidence 689999998776665554443333221111100111 11100000000 00 00000 000 00000
Q ss_pred hhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccce---eeeecccccccccccc
Q 008020 292 CLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITF---SVEQATTMQRSIGNFK 368 (581)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 368 (581)
.. .+. .+..+..+...............+.+.... ..... ...... +.+
T Consensus 253 ~~------~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~-g~~ 304 (479)
T PRK10077 253 SL------DHG--------------------RKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAP-EIFKTL-GAS 304 (479)
T ss_pred HH------HHh--------------------hhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHc-CCC
Confidence 00 000 000000000000000000000011111000 00000 000000 011
Q ss_pred c-cchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 008020 369 I-PAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTL 447 (581)
Q Consensus 369 ~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (581)
. ..........+..++..++..++.+|+.+| ..+..+.++++++++.+......
T Consensus 305 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r----------~~~i~~~~~~~v~~~~l~~~~~~--------------- 359 (479)
T PRK10077 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRK----------PLQIIGALGMAIGMFSLGTAFYT--------------- 359 (479)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----------HHHHHhHHHHHHHHHHHHHHHhc---------------
Confidence 1 112222334444555666666666555444 22666777777776665543210
Q ss_pred eeeehhhHHHHHHHHHHHHHH-hhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCC
Q 008020 448 PISVFYLIPQFFLVGSGEGFM-YTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGEN 526 (581)
Q Consensus 448 ~~~~~~li~~~~l~g~~~~~~-~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~ 526 (581)
.....+.+...++.+++.+.. .|..+.++.|.+|++.|++++|+.+..+.+++.+++.+.+.+.. .+|..+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~-------~~~~~~~ 432 (479)
T PRK10077 360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK-------NSWLVAH 432 (479)
T ss_pred CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-------ccchhhh
Confidence 112223333344445554433 37788999999999999999999999999999999988876531 1333221
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhhhccccccccCCch
Q 008020 527 INKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVP 566 (581)
Q Consensus 527 ~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 566 (581)
. +....|++.+++++++.++.+++.++.|+++.||.+
T Consensus 433 ~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 469 (479)
T PRK10077 433 F---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469 (479)
T ss_pred c---cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence 1 123456777777777777777777887777665543
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.93 E-value=3e-23 Score=221.60 Aligned_cols=167 Identities=13% Similarity=0.024 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
..+..++..++..+..+.+...+|.+. +++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence 444555555666555556666666554 57999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.++++++. +.+.+++.|++.|++.|...+...+++.|++|+++ |++++++
T Consensus 102 ~~~~~~~~------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~ 151 (434)
T PRK11663 102 NILFGFSS------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAI 151 (434)
T ss_pred HHHHHHHh------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHH
Confidence 88887762 37788889999999999988999999999999888 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTA 228 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 228 (581)
++...++|..++|.+++++.+.+|||+.|++.++..++.
T Consensus 152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998899999998776654433
No 19
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.93 E-value=9.5e-24 Score=231.84 Aligned_cols=334 Identities=28% Similarity=0.494 Sum_probs=267.4
Q ss_pred HHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008020 43 LSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQL 122 (581)
Q Consensus 43 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 122 (581)
+++|++...+..|+.+.+|++.+++..+...+.....+.++++|+++|+++||++.+.++.++..+|..+++++.. +..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999988876532 110
Q ss_pred CCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHH
Q 008020 123 RPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAV 202 (581)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 202 (581)
.+..+...++++..+.++|.|+..|+..++.+|++++++. ++|.+++.++++++|+|+++++
T Consensus 80 ---------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 80 ---------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred ---------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHH
Confidence 0012245578899999999999999999999999986532 2388999999999999999999
Q ss_pred HHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccc
Q 008020 203 TVLVYIQDEV-------GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLY 275 (581)
Q Consensus 203 ~~~~~l~~~~-------g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~ 275 (581)
.+.+++.+.. +|..+|.+++++.+++++++....++++++++.+++...+.+++..++++++...++.
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~----- 216 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH----- 216 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----
Confidence 9999997443 6999999999999999988888887777766766666666777766665432211110
Q ss_pred cCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeee
Q 008020 276 EDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVE 355 (581)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (581)
...++.|..... + ..+.++++|++++++.++....++|..+.|..+.+..
T Consensus 217 ------------~~~~~ld~a~~~---------------~---~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~ 266 (654)
T TIGR00926 217 ------------WPLHWLDYAKDK---------------H---DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTL 266 (654)
T ss_pred ------------cchhHHHHhccc---------------c---ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 001222222100 0 2235778899999999999999999999999988888
Q ss_pred eccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008020 356 QATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVK 432 (581)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~ 432 (581)
|...++.+++++.+++..++.++.+.++++.|+.++.+.+..+|+.. .+++..++.+|+++.+++++++...+..
T Consensus 267 qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~--~ls~l~k~~iG~~la~la~~va~~ve~~ 341 (654)
T TIGR00926 267 QATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT--RFTSLRKMAVGGLLAALSFFVAALVQLK 341 (654)
T ss_pred HHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888999999999999999999999887777776543 4778899999999999999888877654
No 20
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.92 E-value=4.7e-23 Score=213.88 Aligned_cols=358 Identities=12% Similarity=0.091 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008020 33 LSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGL 112 (581)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~ 112 (581)
.++...++..++.......+|.|.. +++.+..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++..+
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence 4566777777777777777888776 5799999999999999999999999999999999 9999999999888887777
Q ss_pred HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020 113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192 (581)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (581)
..+....+ +.+.+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 81 ~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 135 (365)
T TIGR00900 81 LPFVALLG-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQA 135 (365)
T ss_pred HHHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHH
Confidence 66653111 0247889999999999999999999999999999888 9999999999
Q ss_pred HHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCcc
Q 008020 193 VISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTA 272 (581)
Q Consensus 193 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~ 272 (581)
..++|..++|.+++++.+..||++.|++..+..+++.+..+..+.+.++++++.+...+..+.
T Consensus 136 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 198 (365)
T TIGR00900 136 VRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRD----------------- 198 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHH-----------------
Confidence 999999999999999998899999998877666555444433322111100000000000000
Q ss_pred ccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHHHhhhccccc
Q 008020 273 SLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILFWSTYAQMIT 351 (581)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 351 (581)
. ...+ +...+.+.+...... ...............+
T Consensus 199 -------------------~-------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 199 -------------------T-------------------REGI-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFP 235 (365)
T ss_pred -------------------H-------------------HhHH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0 0000 000001111111111 1111111111111111
Q ss_pred eeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008020 352 FSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEV 431 (581)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~ 431 (581)
.+..+..+.+ ....+.+.....++.++...+.+++.++..+ .+.+..+..+.++++....+..
T Consensus 236 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~- 298 (365)
T TIGR00900 236 YVQSKYLGRG------STHYGWVLAAFGLGALLGALLLGLLGRYFKR----------MALMTGAIFVIGLAILVVGLTP- 298 (365)
T ss_pred HHHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----------hHHHHHHHHHHHHHHHHHHhhc-
Confidence 1111100111 1112233334444455555555544332222 2224445555555554444331
Q ss_pred HHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020 432 KRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK 511 (581)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~ 511 (581)
. +.+.+.+..++.+++.+...+...+++.|.+|++.||+++|+.+....++..+++.+.|.+.
T Consensus 299 ----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 299 ----------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred ----------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23445566778899999999999999999999999999999999999999999999998765
No 21
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.92 E-value=3.5e-23 Score=224.70 Aligned_cols=401 Identities=12% Similarity=0.049 Sum_probs=243.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
|..+..+.+..++..+....+..-+|.. .+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 3455666666777766666666656654 668999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCC-CCCChHHHhHHhhH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQF-DEKDEKEKTQMAYF 186 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~ 186 (581)
++.++++++. +.+.++++|+++|+|.++..|.....+.+.+ |+++ |+++
T Consensus 83 ~~~~~~~~a~------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~ 132 (495)
T PRK14995 83 LASLAAAFSP------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMA 132 (495)
T ss_pred HHHHHHHHcC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHH
Confidence 9999998873 2888999999999999998888887777766 5566 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChh-HHHHHH-----HHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPI-VHICQV-----VVAAR 260 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----l~~~~ 260 (581)
++++....++|..+||.+++++.++.|||+.|++...+.++.+++.....++.+.++.++.+. ..+... +....
T Consensus 133 ~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~ 212 (495)
T PRK14995 133 LGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSA 212 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887666665554444333322211111111 111000 01111
Q ss_pred hhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHH
Q 008020 261 KKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTI 340 (581)
Q Consensus 261 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 340 (581)
++.... ..+....... -.....-...+... +.. .+.|.. + ...-+.|.+.......+...
T Consensus 213 ~~~~~~-~~~~~~~~~~----~~~~~~~l~~f~~~-----e~~-------~~~p~~--~-~~lf~~~~~~~~~~~~~~~~ 272 (495)
T PRK14995 213 KTALKG-FLSLWVTSLT----LLTGALLLGLFIRT-----QLA-------ASRPMI--D-MRLFTHRIILSGVVMAMTAM 272 (495)
T ss_pred Hhcccc-CCchHHHHHH----HHHHHHHHHHHHHH-----Hhc-------CCCCCc--C-HHHhCCcccHHHHHHHHHHH
Confidence 110000 0000000000 00000000000000 000 011110 0 00111111111111111111
Q ss_pred HHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHH
Q 008020 341 LFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSA 420 (581)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~ 420 (581)
..+..+..+.+.+.+...+.+ ....+.......+...+..++.+++.+|..+| +.+..|.++.+
T Consensus 273 ~~~~~~~~~~~~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~----------~~~~~g~~~~~ 336 (495)
T PRK14995 273 ITLVGFELLMAQELQFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR----------LVATGGMALSA 336 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----------HHHHHHHHHHH
Confidence 111111111111111101111 11223334444566666777777776554433 22556777766
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHH
Q 008020 421 LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGF 500 (581)
Q Consensus 421 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~ 500 (581)
+++..+..... ..+.+......++.|++.+...+.....+.+.+|++.+|.+++++++.+.+|+
T Consensus 337 ~~~~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~ 400 (495)
T PRK14995 337 LSFYGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGA 400 (495)
T ss_pred HHHHHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence 66655543311 12333445567788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 008020 501 FFSSLLVSIVKA 512 (581)
Q Consensus 501 ~~g~~~~~~i~~ 512 (581)
.+|+.+.+.+..
T Consensus 401 ~~G~ai~g~i~~ 412 (495)
T PRK14995 401 GLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999997754
No 22
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.92 E-value=6.1e-23 Score=217.16 Aligned_cols=379 Identities=14% Similarity=0.085 Sum_probs=241.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhh-----hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSAT-----SANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA 103 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 103 (581)
|.+..+.+..++...+.....+.+|.|.+ ++|++..+ .+.+.+++.+...++.++.|+++||+ |||+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 45667778888888888888899999886 58888655 37888899999999999999999998 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
++..++.+++.... +.+.+++.|++.|++.+ ..+...+++.|.+|+++ |
T Consensus 92 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~ 140 (408)
T PRK09874 92 LGMGIVMVLMGLAQ------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------S 140 (408)
T ss_pred HHHHHHHHHHHHHh------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------h
Confidence 88888887776652 37788999999999865 45777788899999888 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhc
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKR 263 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (581)
+++.++.+...++|..++|.+++.+.+..+|++.|++..+..++..+......++.++..++++ ..+..
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------- 209 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE-MLHMR---------- 209 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh-hhHHH----------
Confidence 9999999999999999999999999888999999988777655554443332222110000000 00000
Q ss_pred ccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHH
Q 008020 264 KVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILF 342 (581)
Q Consensus 264 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 342 (581)
+..... + +.+........ .......
T Consensus 210 ------------------------------~~~~~~-------------------~-----~~~~~~~~~~~~~~~~~~~ 235 (408)
T PRK09874 210 ------------------------------EVVTSL-------------------K-----NPKLVLSLFVTTLIIQVAT 235 (408)
T ss_pred ------------------------------HHHHhC-------------------c-----CCchHHHHHHHHHHHHHHH
Confidence 000000 0 00111111110 1111110
Q ss_pred HhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHH
Q 008020 343 WSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALG 422 (581)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~ 422 (581)
......++.+..... . +.. ......+.+..+..+..++..+..+++.+|+.+|+ .+..+..+..++
T Consensus 236 ~~~~~~~~~~~~~~~-~-~~~--~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~----------~~~~~~~~~~~~ 301 (408)
T PRK09874 236 GSIAPILTLYVRELA-G-NVS--NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK----------ILITALIFSVLL 301 (408)
T ss_pred HHHHHHHHHHHHHHh-c-cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch----------hHHHHHHHHHHH
Confidence 000000000000000 0 000 00000112223334445555666666665544432 244455544444
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHH
Q 008020 423 MASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFF 502 (581)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~ 502 (581)
++..... .+.+.+.+..++.|++.+...|...+.+.+..|++.||+.+++++....+|..+
T Consensus 302 ~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~ 362 (408)
T PRK09874 302 LIPMSFV-------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT 362 (408)
T ss_pred HHHHHHh-------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh
Confidence 4333322 123344556677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 008020 503 SSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCA 554 (581)
Q Consensus 503 g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~ 554 (581)
|+.+.+.+.+. .++...|++.+++.+++.+..++..
T Consensus 363 gp~~~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 363 GPLMGAAISAN----------------YGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred hHHHHHHHHhh----------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876421 1235677888888777776665543
No 23
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.92 E-value=1e-22 Score=221.53 Aligned_cols=183 Identities=16% Similarity=0.096 Sum_probs=137.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGG----TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA 103 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 103 (581)
++.+.+..+..++..+....+...++..-.+ +.+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~ 93 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 3444455555555555554444434432221 2345666778999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
++..++.++++++.+.. ...+...++++|++.|++.|+..+....+++|.+|+++ |
T Consensus 94 ~~~~v~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------R 149 (502)
T TIGR00887 94 IIMIIATVASGLSPGSS------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------R 149 (502)
T ss_pred HHHHHHHHHHHHccCcc------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------H
Confidence 99999888877652100 01125789999999999999999999999999999999 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhc-----------------------ccchhhHHHHHHHHHHHHHHHHHHc
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQD-----------------------EVGRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~-----------------------~~g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
+++.++.+....+|..+++.++..+.. .++||+.|.+..+..++..+..++.
T Consensus 150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~l 224 (502)
T TIGR00887 150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTI 224 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888765421 2479999987776666555444443
No 24
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.92 E-value=9.5e-23 Score=213.41 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=135.5
Q ss_pred HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020 51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130 (581)
Q Consensus 51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (581)
...+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++.
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------- 80 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------- 80 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence 334457889999999999999999999999999999999998 999999999999999888887773
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020 131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
+.+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+++.+.+
T Consensus 81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 143 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILI 143 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 27889999999999999999999999999999888 9999999999999999999999999888
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 008020 211 EVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 211 ~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
..+|++.|++.++..++..+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 144 HFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred hCCchHHHHHHHHHHHHHHHHhhh
Confidence 899999999877665555444433
No 25
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.92 E-value=5.2e-23 Score=221.31 Aligned_cols=146 Identities=21% Similarity=0.258 Sum_probs=125.0
Q ss_pred CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchh
Q 008020 62 LPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGI 141 (581)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (581)
.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.+++.+.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 125 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFAL--------------------- 125 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcccc---------------------
Confidence 4489999999999999999999999999998 999999999999999888886653211
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH---HHhhcccchhhHH
Q 008020 142 QMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL---VYIQDEVGRSWGY 218 (581)
Q Consensus 142 ~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~---~~l~~~~g~~~~f 218 (581)
+.+.++++|++.|+|.+...+...++++|.+|+++ |++++++++.+.++|..+++.++ +...+..+||+.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 25678999999999999999999999999999998 99999999999999999999998 6666778999999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 008020 219 GICSICMFTAILIFLSG 235 (581)
Q Consensus 219 ~i~~~~~~~~~~~~~~~ 235 (581)
++..+..++.++..++.
T Consensus 200 ~~~~~~~~~~~~~~~~l 216 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFFL 216 (481)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 98666555554444443
No 26
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.92 E-value=3.5e-22 Score=213.29 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CChhhhhh---HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 31 AALSLGIEICERLSTMGIAVNLVTYLGGTMH---LPSATSAN---IVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~---~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
+....+..+++.+..+. .++..+++.++++ .+..+.+. +.+..+++..++++++|+++||+ |||+++..+.+
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 33444456666666655 4556667777774 45554333 34444555559999999999999 99999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
++.+++++++++.+... ........+++.|+++|+|.|+..|...++++|.+|+++ |+
T Consensus 102 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg 159 (432)
T PRK10406 102 MMCFGSLVIACLPGYET----------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KG 159 (432)
T ss_pred HHHHHHHHHhhcCCchh----------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------cc
Confidence 99999999887632110 001124578999999999999999999999999999998 99
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHHH
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQ--------DEVGRSWGYGICSICMFTA 228 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~~~ 228 (581)
++.++.+...+.|..+++.+...+. ..+|||++|++.++..++.
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 9999888888888888887665543 2579999999877655443
No 27
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.92 E-value=4.8e-22 Score=209.51 Aligned_cols=174 Identities=13% Similarity=0.145 Sum_probs=150.5
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020 24 KTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA 103 (581)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 103 (581)
.|..|+..+.+....++.....|...+.+|.+ .+++|+++.+.++..+.+.++..+++++.|+++||+ |||+++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~ 92 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA 92 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence 34567766666666666666666666666664 568999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
++..++.+++.++. +.+.+++.|+++|++.+...+...+++.|.+|+++ |
T Consensus 93 ~~~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~ 142 (394)
T PRK10213 93 VLLTLSCLLVSFAN------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------V 142 (394)
T ss_pred HHHHHHHHHHHHHC------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------H
Confidence 99999888887762 38889999999999999999999999999999888 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAI 229 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 229 (581)
+++.++.....++|..++|.+++++.+.+|||+.|++.+++.++..
T Consensus 143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998766554443
No 28
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.92 E-value=7e-22 Score=209.20 Aligned_cols=158 Identities=11% Similarity=0.057 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020 44 STMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR 123 (581)
Q Consensus 44 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (581)
+...+.+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||++.++.++..++.+++..+.
T Consensus 28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------ 99 (406)
T PRK15402 28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ------ 99 (406)
T ss_pred hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence 44445555554 4578999999999999999999999999999999999 999999999988888888777662
Q ss_pred CCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHH
Q 008020 124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVT 203 (581)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 203 (581)
+.+.+++.|++.|++.+...+...+.+.|.+|+++ |.++.++......+|..++|.
T Consensus 100 ------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 155 (406)
T PRK15402 100 ------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPL 155 (406)
T ss_pred ------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 27778899999999999888888999999999888 888888888778889999999
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 204 VLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 204 ~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
+++++.+..+|++.|++.+++.++..+...
T Consensus 156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 156 VGAALIHVLPWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 999998888999999887766665554433
No 29
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.91 E-value=5.3e-22 Score=206.65 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008020 42 RLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQ 121 (581)
Q Consensus 42 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 121 (581)
+..+..+.+.+| .+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++..+......+.+..... +
T Consensus 4 ~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~---~- 77 (368)
T TIGR00903 4 QAIWVTFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP---F- 77 (368)
T ss_pred hHHHHHHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh---c-
Confidence 334444444444 55779999999999999999999999999999999999 99998766655554443322211 1
Q ss_pred CCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHH
Q 008020 122 LRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMA 201 (581)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~ 201 (581)
+...++++|+++|+|.+.. +.....++|.+|+++ |++++++.+....+|..++
T Consensus 78 --------------------~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~ 130 (368)
T TIGR00903 78 --------------------NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFA 130 (368)
T ss_pred --------------------cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 2788999999999999864 555566789999888 9999999999999999999
Q ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 202 VTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 202 ~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
+.+++++.+.+|||+.|.+.+++.++..++.+
T Consensus 131 ~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~ 162 (368)
T TIGR00903 131 LAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL 162 (368)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886655544444333
No 30
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.91 E-value=9.9e-23 Score=210.47 Aligned_cols=166 Identities=21% Similarity=0.326 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008020 35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLA 114 (581)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~ 114 (581)
++..++..+......+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4566777777777777777688899999999999999999999999999999999998 999999999999999866555
Q ss_pred HhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHH
Q 008020 115 ISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVI 194 (581)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 194 (581)
++ ++ .+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...
T Consensus 81 ~~---~~---------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~ 130 (352)
T PF07690_consen 81 FA---SN---------------------FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGF 130 (352)
T ss_dssp HH---CC---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHH
T ss_pred hh---hh---------------------HHHHhhhccccccccccccccccccccccchhhh------hhhccccccchh
Confidence 54 22 5589999999999999999999999999999998 999999999999
Q ss_pred HhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 195 STGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 195 ~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
++|..++|.+++++.+..+|++.|++.++..++..++
T Consensus 131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 9999999999999998899999999888877776554
No 31
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.91 E-value=1.1e-21 Score=212.63 Aligned_cols=177 Identities=15% Similarity=0.053 Sum_probs=131.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhh-hhh-----HHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSAT-SAN-----IVTDFMGTSFLLCLLGGFLADSFLGRYRTIAI 101 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~ 101 (581)
++.++...+..+++.+.+..+ .+..+++.++++.+..+ ..+ +.++..++..++++++|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 445666667777777766654 34455777777644322 122 24667788999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh
Q 008020 102 FATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT 181 (581)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (581)
+.+++.+++++++++.+... ........++++|+++|+|.|+..+...++++|++|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~----------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~----- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYAT----------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK----- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-----
Confidence 99999999999988732100 000001248999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHHH
Q 008020 182 QMAYFFSRFFFVISTGTLMAVTVLVYIQ--------DEVGRSWGYGICSICMFTA 228 (581)
Q Consensus 182 ~r~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~~~ 228 (581)
|+++.++...+..+|..+|+.+...+. ..+|||++|++.++..+++
T Consensus 152 -Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~ 205 (490)
T PRK10642 152 -RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG 205 (490)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence 999999988877888887776554432 2579999999876554433
No 32
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.91 E-value=4.2e-22 Score=210.00 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=150.9
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020 24 KTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA 103 (581)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 103 (581)
.+.+|+.+....+..++..+..+......+ .+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 346677778888888888888877766665 56778999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
++..++.+++.++. +++.+++.|++.|++.+...+...+++.|.+|+++ |
T Consensus 85 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~ 134 (405)
T TIGR00891 85 VLFSAGTLACGFAP------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------R 134 (405)
T ss_pred HHHHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------h
Confidence 99888888887762 27888999999999999999999999999999988 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHH
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVG--RSWGYGICSICMFTAI 229 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~f~i~~~~~~~~~ 229 (581)
+++.++.+...++|..+++.+++.+.+..+ |++.|++..+..++.+
T Consensus 135 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887666 9999987665544443
No 33
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.91 E-value=6e-22 Score=206.95 Aligned_cols=169 Identities=10% Similarity=0.030 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH-HHHHHHHHHHHH
Q 008020 35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAI-FATVQTFGTGLL 113 (581)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~-~~~~~~~~~~~~ 113 (581)
++..++..++.....+.++.|+++++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.++. +.+...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 4567888888888999999999999999999999999999999999999999999998 99887654 555555566666
Q ss_pred HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH--HHHHH
Q 008020 114 AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF--FSRFF 191 (581)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~ 191 (581)
+++. +++.+++.|++.+.+.+...|...++..|..|+++ |.+. .+...
T Consensus 82 ~~~~------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~ 131 (375)
T TIGR00899 82 AWNR------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMR 131 (375)
T ss_pred Hhcc------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHH
Confidence 6552 26778888888888777778888888888877665 5543 56777
Q ss_pred HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
...++|..++|.+++++.+..|||+.|++.+++.++..+..++
T Consensus 132 ~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 132 AQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999998899999999887765555544433
No 34
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.91 E-value=1.9e-22 Score=214.89 Aligned_cols=167 Identities=15% Similarity=0.142 Sum_probs=144.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
.+++.+....+..+...+..+.... +.+++++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFY-IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 3445566666777777766665544 44567789999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.++++++. +.+.++++|++.|+|.|...+....++.|.+|+++ |++
T Consensus 93 ~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~ 142 (426)
T PRK12307 93 YSVGTGLSGLAS------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSK 142 (426)
T ss_pred HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhH
Confidence 999998888773 37889999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSIC 224 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~ 224 (581)
+.++...+..+|..+++.+.+.+.+..+||+.|++..+.
T Consensus 143 ~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 143 ASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999999999999998889999999876543
No 35
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.91 E-value=8.5e-22 Score=207.60 Aligned_cols=358 Identities=13% Similarity=0.058 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008020 45 TMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP 124 (581)
Q Consensus 45 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (581)
++.+.+.+| .+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+..+.+++.++++++++
T Consensus 25 ~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~~------ 96 (393)
T PRK09705 25 LTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYPQ------ 96 (393)
T ss_pred hhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCcc------
Confidence 344555555 56789999999999999999999999999999999999 9999999999999999999998832
Q ss_pred CCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHH
Q 008020 125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTV 204 (581)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 204 (581)
+..++++|+++|+|.+...+....++.|.+| ++ |+++++.+..+.+.|..+++.+
T Consensus 97 ------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~ 151 (393)
T PRK09705 97 ------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAI 151 (393)
T ss_pred ------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHH
Confidence 7778999999999999999999999999986 66 8999999999999999999999
Q ss_pred HHHhhccc-chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccc
Q 008020 205 LVYIQDEV-GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESR 283 (581)
Q Consensus 205 ~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 283 (581)
++++.++. +||..+.+..+..++.+...+...++.++ .++ ++ +
T Consensus 152 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------------------~~-----------~ 195 (393)
T PRK09705 152 TPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA----SSH---------------------KT-----------T 195 (393)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccc---------------------CC-----------C
Confidence 99888775 79988765544433333322222111100 000 00 0
Q ss_pred cccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHH-HHHHHHHHHHhhhccccceeeeecccccc
Q 008020 284 IQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLL-PIWATTILFWSTYAQMITFSVEQATTMQR 362 (581)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (581)
. .+. + ...+ ++.+... ...+....++......+.++.. .+.+
T Consensus 196 ---~-------------------------~~~---~--~l~~-~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s- 238 (393)
T PRK09705 196 ---T-------------------------TPV---R--VVFT-PRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGAS- 238 (393)
T ss_pred ---c-------------------------CCc---c--cccC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC-
Confidence 0 000 0 0001 1111111 1112222222222222222211 1111
Q ss_pred ccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020 363 SIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGT 442 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~ 442 (581)
....+.......++.++...+.+++.+|..+| +.+..++.+..++++.+....
T Consensus 239 -----~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~----------~~~~~~~~l~~~~~~~~~~~~------------ 291 (393)
T PRK09705 239 -----AQYSGSLLALMTLGQAAGALLMPAMARHQDRR----------KLLMLALVLQLVGFCGFIWLP------------ 291 (393)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHHHHHHhhccch----------HHHHHHHHHHHHHHHHHHHcc------------
Confidence 11122333444555566666665554333222 224556666555554443221
Q ss_pred CCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-cchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCC
Q 008020 443 TGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-KGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHG 521 (581)
Q Consensus 443 ~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~ 521 (581)
.+...+ ...+.+++.+...|.......+..| ++.+|+.+|+.+....++..+++.+.+.+.+.++
T Consensus 292 ------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g------ 357 (393)
T PRK09705 292 ------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG------ 357 (393)
T ss_pred ------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 111111 2234577777777877777677774 6899999999999999999999999998765432
Q ss_pred CcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 008020 522 WVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK 558 (581)
Q Consensus 522 w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~ 558 (581)
.+...|.+.++.+++..++.+...++++
T Consensus 358 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 358 ---------NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1234466666666666666666655544
No 36
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.91 E-value=5.8e-22 Score=210.14 Aligned_cols=176 Identities=14% Similarity=0.080 Sum_probs=148.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+|+.++.+.+..+++......+.. ..+.+++++|++..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 456666666666666666655544 44588999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.++.++++++.+ .+.++++|++.|++.+...|....++.|.+|+++ |+++
T Consensus 84 ~~~~~~~~~~~~------------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~ 133 (412)
T TIGR02332 84 GIASTATMFATG------------------------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA 133 (412)
T ss_pred HHHHHHHHHhcC------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence 999998887732 7789999999999999999999999999999888 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQD------EVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+++++...++|..+++.+++++.+ ..|||+.|++.++..++..++.++
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988863 369999999877665544433333
No 37
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.91 E-value=3.1e-22 Score=216.80 Aligned_cols=400 Identities=14% Similarity=0.117 Sum_probs=241.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.+..+.+..+...+........+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 344555566666666555555555 55678999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.++++.+. +...++++|+++|++.+...+...+++.|.+|+++ |++++++
T Consensus 81 ~~~~~~~~------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 130 (485)
T TIGR00711 81 SLLCGVAP------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAI 130 (485)
T ss_pred HHHHhCcC------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHH
Confidence 98887762 27789999999999999999999999999999888 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCC-ChhHHHHHHH-----HHHHhhc
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSG-SPIVHICQVV-----VAARKKR 263 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-----~~~~~~~ 263 (581)
+.....+|..+||.+++++.++.+|++.|++..+..++..++..+..++.++++.++ +......... .....+.
T Consensus 131 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~ 210 (485)
T TIGR00711 131 WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEG 210 (485)
T ss_pred HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999877665555544443333221111111 1111100000 0000000
Q ss_pred ccccCCCccccccCCccccccccCcccchhc-cccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHH
Q 008020 264 KVELPSSTASLYEDYPEESRIQHTYQFRCLD-KASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILF 342 (581)
Q Consensus 264 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 342 (581)
++. .+. .++ .+...-...... ......+.. .+.+.. ..+..++++........+.....+
T Consensus 211 ----~~~-~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 271 (485)
T TIGR00711 211 ----PER-GWF--DSN---EILILSITGLVAIIAFVVWELT-------DDNPLV--DLRLFKYRNFTIGCVYMSLLGLGL 271 (485)
T ss_pred ----CCC-CCC--Cch---HHHHHHHHHHHHHHHHHHHHHc-------CCCCcc--CHHHHcCCChHHHHHHHHHHHHHH
Confidence 000 000 000 000000000000 000000000 001110 000011111111111111222222
Q ss_pred HhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHH
Q 008020 343 WSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALG 422 (581)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~ 422 (581)
+......+.++ ....+.+ ....+.......++.++..++.+++.+|..+| +.+..+..+.+++
T Consensus 272 ~~~~~~~p~~~-~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~g~~~~~~~ 334 (485)
T TIGR00711 272 YGSFYLLPLYL-QQVLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR----------KLVTIGLILYAVG 334 (485)
T ss_pred HHHHHHHHHHH-HHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH----------HHHHHHHHHHHHH
Confidence 22211111111 1100111 11123344445566667777777766544333 2356677666666
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHH
Q 008020 423 MASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFF 502 (581)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~ 502 (581)
...+.+... ...+.+.++...++.|++.+...+.......+..|++.||+++|+.++.+.+|+.+
T Consensus 335 ~~~~~~~~~---------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i 399 (485)
T TIGR00711 335 FYWRAFTFT---------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI 399 (485)
T ss_pred HHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH
Confidence 655542110 02233445556778899999988888888889999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 008020 503 SSLLVSIVKA 512 (581)
Q Consensus 503 g~~~~~~i~~ 512 (581)
|+.+.+.+..
T Consensus 400 g~~i~g~~~~ 409 (485)
T TIGR00711 400 GTALITTILT 409 (485)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 38
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.91 E-value=1e-21 Score=212.10 Aligned_cols=177 Identities=12% Similarity=0.014 Sum_probs=135.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
+++++.++......++.....+.+.+.++ ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~ 109 (476)
T PLN00028 32 RPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLM 109 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 34445666666666666666666655444 66789999999999999999999999999999999998 99999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+..++.++++++. +...+++.|++.|++.+...+ ...+++|++|+++ |+
T Consensus 110 ~~~~~~~~~~~~~------------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg 158 (476)
T PLN00028 110 LTAPAVFCMSLVS------------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VG 158 (476)
T ss_pred HHHHHHHHHHHhc------------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------ee
Confidence 8888888777662 267788899999999886543 4567899999988 99
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhh----c-----ccchhhHHHHHHHHHHHHHHHHHH
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQ----D-----EVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~----~-----~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+++++.+...++|..+++.+.+.+. + ..|||+.|++.+++.++..+..++
T Consensus 159 ~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 159 TANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988777778877766655442 2 258999999877766554444333
No 39
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.91 E-value=2.4e-22 Score=209.42 Aligned_cols=353 Identities=12% Similarity=0.015 Sum_probs=219.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
|+.........+... ..|.+ ..+.+++.+++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~ 79 (377)
T TIGR00890 3 WYVLVGTVIMCFTSG-YVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYG 79 (377)
T ss_pred EEEeHHHHHHHHHhh-HHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHH
Confidence 333333333333333 34444 4455677889999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.++++++. +.+.++++|.+.|++.+...+.....+.+.+| ++ |+++.
T Consensus 80 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~ 128 (377)
T TIGR00890 80 LGFTFYAIAD------------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLAS 128 (377)
T ss_pred HHHHHHHHHH------------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHH
Confidence 9998888773 37889999999999999888888888888886 45 89999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL 267 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (581)
++.....++|..+++.+.+.+.+..|||+.|++.++..++..+..+...++.++++.+++.
T Consensus 129 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 189 (377)
T TIGR00890 129 GIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI------------------- 189 (377)
T ss_pred HHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc-------------------
Confidence 9999998999887666666666778999999987776555544433322211110000000
Q ss_pred CCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhc
Q 008020 268 PSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYA 347 (581)
Q Consensus 268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 347 (581)
+. .+ + .... .+..+.+.........+..........
T Consensus 190 -~~----------------~~------~---------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (377)
T TIGR00890 190 -EV----------------SV------K---------------DYTV------WEMLRTPQFWVLYLSFFLNAVSGLLLI 225 (377)
T ss_pred -cc----------------ch------h---------------hhhH------HHHHcCccHHHHHHHHHHHhHHHHHHH
Confidence 00 00 0 0000 000000111111111111111111111
Q ss_pred cccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008020 348 QMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS 427 (581)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~ 427 (581)
.....+. +....+ ......+.....+..++..++.+++.+|+.+|+. +..+.++..++.+.+.
T Consensus 226 ~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~----------~~~~~~~~~~~~~~~~ 288 (377)
T TIGR00890 226 GLYKPYG-QSLGLS------DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT----------MSIVFGISAVGMAAML 288 (377)
T ss_pred HHHHHHH-HHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------hhHHHHHHHHHHHHHH
Confidence 1001010 000000 1112234445556666777777777766654421 4556666666655444
Q ss_pred HHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 008020 428 VVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLV 507 (581)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~ 507 (581)
... ..+....+...++.+++.+...+....++.|.+|++.|++.+|+.+....+|..+++.+.
T Consensus 289 ~~~-----------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 289 FIP-----------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred Hcc-----------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 321 111122333345566666666677778899999999999999999999999999999999
Q ss_pred HHHH
Q 008020 508 SIVK 511 (581)
Q Consensus 508 ~~i~ 511 (581)
+.+.
T Consensus 352 g~l~ 355 (377)
T TIGR00890 352 SHAL 355 (377)
T ss_pred HHHH
Confidence 8775
No 40
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.91 E-value=1.2e-21 Score=201.82 Aligned_cols=348 Identities=22% Similarity=0.282 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG 111 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 111 (581)
+.+....++..+..+...+.++.|.+ ++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 44566777888888888888888775 6799999999999999999999999999999998 999999999999999988
Q ss_pred HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020 112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191 (581)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 191 (581)
+..... +.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 80 ~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 129 (352)
T cd06174 80 LLAFAS------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFS 129 (352)
T ss_pred HHHHhc------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHH
Confidence 887762 27889999999999999999999999999999988 999999999
Q ss_pred HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCc
Q 008020 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSST 271 (581)
Q Consensus 192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~ 271 (581)
...++|..++|.+++.+.+..+|++.|++..+..++..+...+.. +
T Consensus 130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--------------------- 175 (352)
T cd06174 130 AGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------R--------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------H---------------------
Confidence 999999999999999999988999999887776665554433321 0
Q ss_pred cccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020 272 ASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMIT 351 (581)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (581)
.........+........+....+
T Consensus 176 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 199 (352)
T cd06174 176 --------------------------------------------------------LLLLLALAFFLLSFGYYGLLTYLP 199 (352)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 000001011111111111111111
Q ss_pred eeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008020 352 FSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEV 431 (581)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~ 431 (581)
.+..+..+.+ ....+.......+..++..++.+++.+|..+|+. .+..+..+..++.......
T Consensus 200 ~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~-- 262 (352)
T cd06174 200 LYLQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL---------LLLIGLLLAALGLLLLALA-- 262 (352)
T ss_pred HHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHh--
Confidence 1111000111 1123344555666677777777777665544420 2666777777776655543
Q ss_pred HHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020 432 KRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK 511 (581)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~ 511 (581)
.+.+......++.+++.+...+....++.|..|++.|++.+|+.+..+.++..+++.+.+.+.
T Consensus 263 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~ 325 (352)
T cd06174 263 -----------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325 (352)
T ss_pred -----------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 124556677888999999999999999999999999999999999999999999999998774
Q ss_pred hhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 008020 512 AATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFL 551 (581)
Q Consensus 512 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~ 551 (581)
+ ..++...+++.+++.+++.++.+
T Consensus 326 ~----------------~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 326 D----------------TGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred c----------------ccCcchHHHHHHHHHHHHHHHhe
Confidence 2 11224556777777777666544
No 41
>PRK09952 shikimate transporter; Provisional
Probab=99.91 E-value=1.9e-21 Score=207.81 Aligned_cols=178 Identities=11% Similarity=0.083 Sum_probs=132.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCChhhhhhHH-----HHHHHHHHHHHHHHHHHhhhcccchHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM--HLPSATSANIV-----TDFMGTSFLLCLLGGFLADSFLGRYRT 98 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~~~~~~~~~~-----~~~~~~~~~~~~~~G~laD~~~Grr~~ 98 (581)
.++|.++...+..+++.+....+....+.+..+++ +.++.+ +.+. ++..++..++.++.|+++||+ |||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~ 96 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence 34566677777778877777665555555555544 566653 4433 234556678889999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChH
Q 008020 99 IAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEK 178 (581)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~ 178 (581)
+..+.++..+++++++++.+... ........+++.|+++|++.|+..+....++.|.+|+++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-- 158 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFST----------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK-- 158 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHH----------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC--
Confidence 99999999999999888732110 000012258889999999999999999999999999998
Q ss_pred HHhHHhhHHHHHHHHHHhhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHH
Q 008020 179 EKTQMAYFFSRFFFVISTGTLMAVTVLVYIQ--------DEVGRSWGYGICSICMFT 227 (581)
Q Consensus 179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~~ 227 (581)
|++..+....+..+|..++..+...+. ..+|||++|++.++..++
T Consensus 159 ----rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 159 ----KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 999998888888888888876666554 257999999987765443
No 42
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.91 E-value=3.8e-21 Score=201.57 Aligned_cols=176 Identities=15% Similarity=0.105 Sum_probs=147.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+++..+.+....+...++.....+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 3445555555556666666666665654 5678999999999999999999999999999999998 9999999999998
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.++.+++..+. +.+.+++.|++.|++.+...+...+++.|.+|+++ |+++
T Consensus 81 ~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 130 (385)
T TIGR00710 81 ALSSLGLALSN------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRI 130 (385)
T ss_pred HHHHHHHHHHc------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHH
Confidence 88888887762 27788999999999999999999999999999888 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+++.+...++|..++|.+++++.+..+|++.|++..+..++..+....
T Consensus 131 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 131 YSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998899999998777665555444443
No 43
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.91 E-value=2.5e-22 Score=216.55 Aligned_cols=150 Identities=13% Similarity=-0.020 Sum_probs=123.9
Q ss_pred HHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcc
Q 008020 53 VTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDI 132 (581)
Q Consensus 53 ~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (581)
.+.+.+++|++.++.+++.+.+.+++.++++++|+++||+ |||+++..+.++..++..+.+.....
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~------------- 117 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS------------- 117 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 4467789999999999999999999999999999999999 99999988887777766655442000
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 008020 133 TKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV 212 (581)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 212 (581)
...+.+.+++.|++.|++.+...|....+++|++|+++ |+++++++..+.++|..+++.+..++.+..
T Consensus 118 ------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~ 185 (467)
T PRK09556 118 ------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYF 185 (467)
T ss_pred ------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence 00248889999999999999999999999999999999 999999999999999999998887665543
Q ss_pred ---chhhHHHHHHHHHHHH
Q 008020 213 ---GRSWGYGICSICMFTA 228 (581)
Q Consensus 213 ---g~~~~f~i~~~~~~~~ 228 (581)
+|+..|.+.++..++.
T Consensus 186 ~~~~~~~~f~~~g~~~~~~ 204 (467)
T PRK09556 186 FDGHVIGMFIFPSIIALII 204 (467)
T ss_pred ccCcchhHHHHHHHHHHHH
Confidence 5888887766554443
No 44
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.90 E-value=2.2e-21 Score=203.66 Aligned_cols=172 Identities=7% Similarity=0.094 Sum_probs=150.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
++.++.+.+..++.....+...+.+|. +++++|++.++.+++.+.+.++..++++++|+++||+ |||+++..+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 79 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV 79 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence 356778888888888888877777765 5678999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.++++++. +.+.+++.|++.|++.+...+....++.|.+++++ |++++
T Consensus 80 ~~~~l~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 129 (382)
T PRK10091 80 IGNAMFTLSS------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAV 129 (382)
T ss_pred HHHHHHHHhC------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHH
Confidence 9998888772 28889999999999999988888888999998887 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
+....+..+|..++|.+++++.+..+||++|++.++..++..+.
T Consensus 130 ~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 130 AGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 99988999999999999999988899999999877665554443
No 45
>TIGR00898 2A0119 cation transport protein.
Probab=99.90 E-value=1.8e-21 Score=212.02 Aligned_cols=387 Identities=18% Similarity=0.149 Sum_probs=229.2
Q ss_pred HHhccccCCC---hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020 54 TYLGGTMHLP---SATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130 (581)
Q Consensus 54 ~yl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (581)
..+.++++++ ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++ +
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---~---------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---P---------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---c----------
Confidence 3467789998 89999999999999999999999999998 99999999999999888888776 2
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020 131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
+++.+++.|++.|++.++..+...+++.|.+|+++ |+++.++......+|.+++|.+++.+.+
T Consensus 179 -----------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (505)
T TIGR00898 179 -----------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD 241 (505)
T ss_pred -----------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 28889999999999999999999999999999998 9999999988899999999988876653
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCccc
Q 008020 211 EVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQF 290 (581)
Q Consensus 211 ~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 290 (581)
||+.|++.++..++..+..++..+..+....+++ ..+..+.+....+..+.+.++.. .+. ..
T Consensus 242 ---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~---~~~---------~~-- 303 (505)
T TIGR00898 242 ---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAEV---LSL---------SL-- 303 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHH---Hhh---------hh--
Confidence 9999988777666555544443322111111111 11112222222111111111000 000 00
Q ss_pred chhccccccccCCCCCCCCccCCCCc-ccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccccccccccccc
Q 008020 291 RCLDKASVVTNTDYSEDGAFVSNPWT-LCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKI 369 (581)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (581)
++. ...++ ....++ .++.+ ..++..+.....++... ..+... ..+.. .. +.
T Consensus 304 ---~~~-~~~~~--------~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~---~~-------~~ 355 (505)
T TIGR00898 304 ---EKD-LSSSK--------KQYSFLDLFRTP--NLRKTTLCLMMLWFTTA---FSYYGL-VLDLG---NL-------GG 355 (505)
T ss_pred ---hhh-hhhcc--------CCCcHHHHhCCh--HHHHHHHHHHHHHHHHH---HHHHHH-hcccc---cc-------CC
Confidence 000 00000 000000 00000 00111111111111111 111111 00100 00 11
Q ss_pred cchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee
Q 008020 370 PAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPI 449 (581)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (581)
+.........+..+....+..++.+|+.||. .+.++.++.+++++.+.+.. ..
T Consensus 356 ~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~----------~~~~~~~~~~~~~l~~~~~~-----------------~~ 408 (505)
T TIGR00898 356 NIYLDLFISGLVELPAKLITLLLIDRLGRRY----------TMAASLLLAGVALLLLLFVP-----------------VD 408 (505)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHHHHcC-----------------CC
Confidence 1111122233333444444555555554442 25556666666655554431 11
Q ss_pred eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCcc
Q 008020 450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINK 529 (581)
Q Consensus 450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~ 529 (581)
..+..+...++.+++....++..+.+..|.+|++.|++++|+.+....+|+.++|.+.+ +...
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~---------------- 471 (505)
T TIGR00898 409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK---------------- 471 (505)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH----------------
Confidence 12333444455667777778889999999999999999999999999999999999887 3211
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccccccccC
Q 008020 530 GRLDCFYGLLAALSFINFGLFLLCASWYKRKKAK 563 (581)
Q Consensus 530 ~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 563 (581)
+....+++++++.+++.++.+ +.+++++++++
T Consensus 472 -~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~ 503 (505)
T TIGR00898 472 -WLFLPLVLFGGLALLAGILTL-FLPETKGVPLP 503 (505)
T ss_pred -HHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCC
Confidence 112345666666666655544 44666665543
No 46
>PRK03699 putative transporter; Provisional
Probab=99.90 E-value=3.1e-21 Score=203.41 Aligned_cols=173 Identities=11% Similarity=0.109 Sum_probs=144.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
+++|..+...+..++.....+..-..+|. +.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 45667777777777777776666665655 5678999999999999999999999999999999999 999999999998
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+++.++. +.+.+++.|+++|++.|...+...+++.|.+|+++ |++
T Consensus 82 ~~i~~~l~~~~~------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~ 131 (394)
T PRK03699 82 MILAVAGLMFSH------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS 131 (394)
T ss_pred HHHHHHHHHHcc------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence 888888887762 37788999999999999988999999999999888 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQ-DEVGRSWGYGICSICMFTAIL 230 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~-~~~g~~~~f~i~~~~~~~~~~ 230 (581)
+++..+...++|+.++|.+.+++. +..|||++|.+.++..++..+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 998888888899999998888765 457999999876665554443
No 47
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.90 E-value=4.6e-21 Score=201.99 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=137.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++.++...++..++...+...++.. .+++|.+..+.+++.+.+.+...++.+++|+++||+ |||+++.++.++..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 456777888888887665555555544 568899999999999999999999999999999999 999999999999988
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.+++.++. + .++.|+++|++.++..|+..+++.|.+|+++ |+++.+
T Consensus 81 ~~~~~~~~~------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~ 127 (393)
T PRK11195 81 GCLLMLFGI------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANG 127 (393)
T ss_pred HHHHHHHHH------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 887766541 1 2678999999999999999999999999988 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAIL 230 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 230 (581)
+.....++|..+||.++|++.+. .|+..+.+...+.+++.+
T Consensus 128 ~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 128 WMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 477776665554444433
No 48
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.90 E-value=5.3e-22 Score=213.09 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=125.2
Q ss_pred HHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccc
Q 008020 54 TYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDIT 133 (581)
Q Consensus 54 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (581)
+.+.+++|++.++.+++.+.+.+...++.+++|+++||+ |||++++.+.++..++.++++++.+
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------- 106 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN--------------- 106 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh---------------
Confidence 455679999999999999999999999999999999998 9999999999888888888877622
Q ss_pred cccCCchhhHHHHHH-HHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 008020 134 KCQHASGIQMGVLYI-SLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV 212 (581)
Q Consensus 134 ~~~~~~~~~~~~l~~-~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 212 (581)
.+.+++ .|++.|++.+...+...+++.+.++ ++ |+++.++.+.+.++|..++|.+++.+.+.+
T Consensus 107 ---------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 107 ---------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred ---------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 454544 5688899998776666778888885 56 999999999999999999999999999989
Q ss_pred chhhHHHHHHHHHHHHHHHHHHc
Q 008020 213 GRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 213 g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
|||++|++.+++.+++.+..++.
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887766555444443
No 49
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.3e-22 Score=201.93 Aligned_cols=175 Identities=14% Similarity=-0.016 Sum_probs=153.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH---HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVN---LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
|-.+-+++..++...++|.+.-+ ..+++.++.++|.+|.|.+.+++++++.++-.+.|.++||. +.|+.+-+++++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLil 103 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHH
Confidence 33455666677777777766644 45688899999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
.++..+++.++. +...+.+...+.|..+|.-.|.+...++.++++++ ||+
T Consensus 104 sai~nil~Gfs~------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~ 153 (448)
T COG2271 104 SAIVNILFGFSP------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGT 153 (448)
T ss_pred HHHHHHHHhhhh------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCc
Confidence 999999999883 38888999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhHHHHHHHH--HHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVL--VYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~--~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
..++++.+-|+|+.+.|.+. +++..+.+||..|++++++.++..++.++
T Consensus 154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 89998889999999999876655444433
No 50
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.90 E-value=2.3e-21 Score=208.20 Aligned_cols=151 Identities=9% Similarity=-0.023 Sum_probs=122.3
Q ss_pred HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020 51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130 (581)
Q Consensus 51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (581)
...+|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||++++++.++..++.++++++....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~~---------- 117 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------- 117 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhccc----------
Confidence 344577777 99999999999999999999999999999999 999999999998888888777652100
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhH-HHHHHHHHHhh
Q 008020 131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGT-LMAVTVLVYIQ 209 (581)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~l~ 209 (581)
.+...+++.|++.|++.|...+.....+.|++|+++ |++++++++.+.++|+ .++|+++..+.
T Consensus 118 ----------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 118 ----------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred ----------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 136678889999999999988888888999999888 9999999999989886 45665543343
Q ss_pred cccchhhHHHHHHHHHHHHH
Q 008020 210 DEVGRSWGYGICSICMFTAI 229 (581)
Q Consensus 210 ~~~g~~~~f~i~~~~~~~~~ 229 (581)
...+||+.|++.+++.++..
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~ 201 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVA 201 (452)
T ss_pred HhccHHHHHHHHHHHHHHHH
Confidence 34589999998776555443
No 51
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.90 E-value=5.2e-21 Score=206.25 Aligned_cols=147 Identities=10% Similarity=0.108 Sum_probs=128.3
Q ss_pred ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCC
Q 008020 59 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHA 138 (581)
Q Consensus 59 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (581)
+++++..+.+.+.+.+.++..++++++|+++||+ |||+++.++.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999998 9999999999888888777654421
Q ss_pred chhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc-chhhH
Q 008020 139 SGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV-GRSWG 217 (581)
Q Consensus 139 ~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-g~~~~ 217 (581)
.+...+++.|+++|++.+...|....++.|++|+++ |++++++.+.+.++|..++|.+++++.+.. ||++.
T Consensus 129 --~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 129 --GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred --cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 125678999999999999999999999999999998 999999999999999999999999998884 99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008020 218 YGICSICMFTAILIFLS 234 (581)
Q Consensus 218 f~i~~~~~~~~~~~~~~ 234 (581)
|++.++..++..++.+.
T Consensus 201 f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFV 217 (465)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 99887766555444443
No 52
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.90 E-value=1.4e-20 Score=199.05 Aligned_cols=171 Identities=13% Similarity=0.036 Sum_probs=141.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
.+.||.+....++.++...+.+....++++++ +++|++..+.+.+.+.+.++..++.+++|+++||+ ||||++..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 35577888889999998888888888888888 57899999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+..++.+++....... .+.+.+++.|.+.|+|.+...+...+.+.+.+|+++ |+
T Consensus 87 ~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g 140 (402)
T TIGR00897 87 LWCVGHAAFIVFGLGH--------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LS 140 (402)
T ss_pred HHHHHHHHHHHHhccC--------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HH
Confidence 8888776553211100 126777889999999988877777888889999888 99
Q ss_pred hHHHHHHHHHHhhH-HHHHHHHHHhhcccchhhHHHHHHH
Q 008020 185 YFFSRFFFVISTGT-LMAVTVLVYIQDEVGRSWGYGICSI 223 (581)
Q Consensus 185 ~~~~~~~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~i~~~ 223 (581)
+++++.+...++|. .++|.+++++.+..||+..++....
T Consensus 141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999999996 6899999998888887666554433
No 53
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.90 E-value=8.5e-22 Score=206.41 Aligned_cols=397 Identities=13% Similarity=0.053 Sum_probs=239.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHH
Q 008020 68 ANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLY 147 (581)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 147 (581)
+.+++++.++++++..+.|+++||+ |||..+.++.++..++.++..++...+. ..++.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~~---------------------~e~li 120 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAPS---------------------FEMLI 120 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhhh---------------------HHHHH
Confidence 4567889999999999999999999 9999999999999998888877754443 88999
Q ss_pred HHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH--HhhcccchhhHHHHHHHHH
Q 008020 148 ISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV--YIQDEVGRSWGYGICSICM 225 (581)
Q Consensus 148 ~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~--~l~~~~g~~~~f~i~~~~~ 225 (581)
++|++.|+..|......+-++.|..|++. ||..-.+...+.++|..++..++. .+...-.|++.+.+..+..
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999966652 3334456999888888877
Q ss_pred HHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCC
Q 008020 226 FTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYS 305 (581)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (581)
++.++...++.+..+..-.++++..+..+.+.. ++..+++++.++.. .+..+..+..+++
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~---------------y~G~~~~~~~~e~~--~~e~~~~~~~~~~--- 254 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKKGDEEEARKALKF---------------YRGKEDVEAEIEEM--LREIEEEELEKKK--- 254 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHH---------------HhCCCcchhHHHHH--HHHHHHhcccccc---
Confidence 777766666543332211111111111111111 01111100000000 0000000000000
Q ss_pred CCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccccccccccccccc---hhhhhhhHHHH
Q 008020 306 EDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPA---ASLTVFFVAAI 382 (581)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 382 (581)
....++.++++. .|+.+...+.+.+. +|+.+...... +...-+...+++. .+.+....+..
T Consensus 255 -----~~sl~~~~~~~~--lR~~~~i~~~v~~~--------qq~sGi~ai~~-Yst~i~~~aG~~~~~a~~an~~~g~v~ 318 (485)
T KOG0569|consen 255 -----QISLRQLLKNPT--LRRPLLIGIVVSFA--------QQFSGINAIFF-YSTSIFKTAGFTPEEAQYANLGIGIVN 318 (485)
T ss_pred -----CCcHHHHhcCcc--hhHHHHHHHHHHHH--------HHhcCcceeHH-HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 011111112111 11222222212111 12211111100 0000000112222 23333334444
Q ss_pred HHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeee-hh-hHHHHHH
Q 008020 383 LITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISV-FY-LIPQFFL 460 (581)
Q Consensus 383 i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-li~~~~l 460 (581)
++.......++++++||. .++.+..++.+..+++.......... . +| .+ .+...++
T Consensus 319 ~~~t~~~~~lid~~gRRp----------Lll~~~~~~~~~~~~~~~~~~l~~~~-----------~-~~~~y~~i~~~~~ 376 (485)
T KOG0569|consen 319 LLSTLVSPFLIDRLGRRP----------LLLISLSLMAVALLLMSIALFLSNSF-----------G-SWLSYLCIAAIFL 376 (485)
T ss_pred HHHHHHHHHHHHhcCCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHh-----------h-hHHHHHHHHHHHH
Confidence 555555556666666552 25666666666665554432211000 1 11 12 2333344
Q ss_pred HHHHHH-HHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHH
Q 008020 461 VGSGEG-FMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLL 539 (581)
Q Consensus 461 ~g~~~~-~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~ 539 (581)
+.+++. ...|..+-+.+|.+|++.|+.++++..+++++.+++.....+.+.+..+ ..+|+++
T Consensus 377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF 439 (485)
T KOG0569|consen 377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILF 439 (485)
T ss_pred HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHH
Confidence 444444 4469999999999999999999999999999999999999988765442 2468888
Q ss_pred HHHHHHHHHHHHhhhccccccccCCchh
Q 008020 540 AALSFINFGLFLLCASWYKRKKAKQVPE 567 (581)
Q Consensus 540 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 567 (581)
++.+++..+..+++.||+|+|+.+++.+
T Consensus 440 ~i~~~~~~i~~~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 440 VIPLAIFLIYLYRYLPETKGRTPYEIIE 467 (485)
T ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence 9999999999999999999998877654
No 54
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.90 E-value=4.3e-21 Score=201.46 Aligned_cols=157 Identities=13% Similarity=0.159 Sum_probs=138.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
.|.++.++...++..+....+.+.+|.|+. ++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 457888999999999999888899998877 6799999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++..+++++. +.+.++++|++.|++.+...+...+.+.+..++++ |++++
T Consensus 83 ~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 132 (381)
T PRK03633 83 AGCAGLGLMV------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLL 132 (381)
T ss_pred HHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 8888877762 37889999999999999988888888888888877 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhh
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSW 216 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~ 216 (581)
+++....++|..+||.+++.+.+...+..
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 161 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSVL 161 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 99999999999999999999876543333
No 55
>TIGR00895 2A0115 benzoate transport.
Probab=99.90 E-value=2.4e-21 Score=203.54 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=141.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+++......+..++.....+... ...+++.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence 34444545555555555554444 344566678999999999999999999999999999999998 9999999999888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.++.+++.++. +.+.+++.+++.|++.+...+...+++.|.+|+++ |+++
T Consensus 93 ~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~ 142 (398)
T TIGR00895 93 SVFTLLCALAT------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTA 142 (398)
T ss_pred HHHHHHHHHcc------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchh
Confidence 88887776652 26778899999999999999999999999999888 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAI 229 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 229 (581)
+++.....++|..+++.+++++.+..||++.|++.++..++..
T Consensus 143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 185 (398)
T TIGR00895 143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185 (398)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence 9999999999999999999999998999999988754444333
No 56
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.90 E-value=1.5e-20 Score=199.38 Aligned_cols=148 Identities=12% Similarity=0.082 Sum_probs=130.2
Q ss_pred hccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 008020 56 LGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKC 135 (581)
Q Consensus 56 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (581)
+.+++|.+..+.++..+.+.++..++++++|+++||+ |||+++..+.++..++.+++.++.
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------ 102 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------ 102 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence 5678999999999999999999999999999999998 999999999999999988888762
Q ss_pred cCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchh
Q 008020 136 QHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRS 215 (581)
Q Consensus 136 ~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~ 215 (581)
+.+.++++|+++|++.+...+....++.|.+++++ |++.+++.....++|..+||.+++++.++.|||
T Consensus 103 ------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~ 170 (413)
T PRK15403 103 ------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK 170 (413)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 27889999999999988766777788899999888 999999999999999999999999998888999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008020 216 WGYGICSICMFTAILIFLS 234 (581)
Q Consensus 216 ~~f~i~~~~~~~~~~~~~~ 234 (581)
+.|++.++..+++.+..++
T Consensus 171 ~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887766665544333
No 57
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.89 E-value=3.1e-21 Score=209.68 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=145.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
.+++.+..+.+..+...+........+ +++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 445666677777777777666555545 456778999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+++.++. +.+.++++|++.|++.++..+...+++.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 144 (496)
T PRK03893 95 FSVGTLACGFAP------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNK 144 (496)
T ss_pred HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 999888887762 37889999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICM 225 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~ 225 (581)
++++.....++|..++|.+.+++.+.++|++.|++..+..
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998754443
No 58
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.89 E-value=1.5e-20 Score=198.11 Aligned_cols=173 Identities=11% Similarity=0.074 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHH-HHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMG-TSFLLCLLGGFLADSFLGRYRTIA-IFATVQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~-~~~~~~ 106 (581)
...+..++..++..++...+.+.++.|+++++|++.++.+.+.+...+ +..++++++|+ +||+ ||||.++ .+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~ 92 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG 92 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence 456778888999999999999999999999999999999999876655 55555655555 9999 9988754 555555
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH--h
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM--A 184 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r--~ 184 (581)
.++..+.+++. +.+.+++.+.+.+...+...|....+..|..+++. | +
T Consensus 93 ~~~~~~~~~~~------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 142 (393)
T PRK15011 93 VLACTLFAWNR------------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAV 142 (393)
T ss_pred HHHHHHHHHhh------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHH
Confidence 55555555552 25555444444433344567777787888766554 4 3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
...++.+...++|..+||.+++++.++.|||..|++.++..++..+...
T Consensus 143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 4456788889999999999999999889999999887765555444333
No 59
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.89 E-value=1.7e-20 Score=197.79 Aligned_cols=172 Identities=14% Similarity=0.081 Sum_probs=144.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
+.+|..+.......+..+......+.+|.+ .+++|++..+.+++.+.+.++..++.+++|+++||+ |||+.+.++.+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~ 82 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence 345666767777777777666666666554 568999999999999999999999999999999999 999999999998
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+++..+. +.+.+++.|++.|++.+...+....+..|.+++++ +++
T Consensus 83 ~~~~~~~~~~~~------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 132 (394)
T PRK11652 83 FILGTLVALFAH------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRH 132 (394)
T ss_pred HHHHHHHHHHHc------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHH
Confidence 888888777662 27788999999999998888888888899888877 899
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAI 229 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 229 (581)
+.++.+.+..+|..++|.+++++.+..||++.|++..+..++..
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888899999988766544433
No 60
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.89 E-value=5.1e-21 Score=203.56 Aligned_cols=393 Identities=10% Similarity=0.000 Sum_probs=226.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
++.+|.+....++..+++..+.++++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ |||+++.++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~ 87 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL 87 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence 35678888899999998988999999999999999999999999999999999999999999998 99999988766555
Q ss_pred HHHHHHHH-hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 108 FGTGLLAI-STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 108 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
++...... ... +. .......+..+.++..+...+...+.+.++.++.. .+++..
T Consensus 88 ~~~~~~~~~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~ 142 (420)
T PRK09528 88 VLFGPFFIYVFA-PL--------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFE 142 (420)
T ss_pred HHHHHHHHHHHH-HH--------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcccc
Confidence 44332211 100 00 00011122222233333333333333333332111 116667
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccc
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVE 266 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (581)
++......++|..++|.+++.+.+ .+|+.+|++.++..+++++..+...++.++++...++
T Consensus 143 ~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 203 (420)
T PRK09528 143 YGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA------------------ 203 (420)
T ss_pred chhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc------------------
Confidence 778788889999999999999876 5899999887766665555544433221111000000
Q ss_pred cCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHH-HHHHHHHhh
Q 008020 267 LPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIW-ATTILFWST 345 (581)
Q Consensus 267 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 345 (581)
++. .++.....+.... .+.+.++...... .....+...
T Consensus 204 -~~~---------------~~~~~~~~~~~~~-------------------------l~~~~~~~l~l~~~~~~~~~~~~ 242 (420)
T PRK09528 204 -LGA---------------NASAVSLKDALAL-------------------------LKLPKFWFLVLYVIGVACFYDVF 242 (420)
T ss_pred -hhc---------------ccccccHHHHHHH-------------------------ccCCCeEeehHHHHHHHHHHHHH
Confidence 000 0000000000000 0001111111111 111111111
Q ss_pred hccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 008020 346 YAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMAS 425 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~ 425 (581)
..+.+.++.... .+.... ....+.+..+..+...+..++.+++.+|+.+|+. +..+.++.+++.+.
T Consensus 243 ~~~~~~~~~~~~--~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~----------~~~~~~l~~~~~~l 308 (420)
T PRK09528 243 DQQFPNFFASFF--ATPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA----------LLLAGTIMAVRIIG 308 (420)
T ss_pred HHHHHHHHHHHH--hccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh----------hHHHHHHHHHHHHH
Confidence 112222111110 000000 0012233444555556667777777766655421 55666666666655
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH-HHHHHhHHHHHHH
Q 008020 426 ASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL-FLTTLSLGFFFSS 504 (581)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~~g~ 504 (581)
+++. .+.+.++...++.+++.+...+....++.+..|++.+++..++ +++...+|..+++
T Consensus 309 ~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~ 369 (420)
T PRK09528 309 SGFA-------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLS 369 (420)
T ss_pred HHhc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHH
Confidence 5543 1334556667778888888888888999999999999988766 6778889999999
Q ss_pred HHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 008020 505 LLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCAS 555 (581)
Q Consensus 505 ~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~ 555 (581)
.+.|.+.+.. ++...|.+.+++.++..++.++..+
T Consensus 370 ~~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 370 TLAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998775421 2355677777777666665555544
No 61
>PRK15075 citrate-proton symporter; Provisional
Probab=99.89 E-value=2.6e-20 Score=198.95 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=127.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHH-HHH-----HHHHHHHHHHHHHHhhhcccchHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIV-TDF-----MGTSFLLCLLGGFLADSFLGRYRTIAI 101 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~-~~~-----~~~~~~~~~~~G~laD~~~Grr~~l~~ 101 (581)
++....+++..+++.+....+.. ..+.+.++++.+..+.+... +.. .+...+++++.|+++||+ |||+++..
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGF-YATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence 44556666666777666665544 44577888998877755433 222 222246789999999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh
Q 008020 102 FATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT 181 (581)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (581)
+.++..++.++++++.+... ........++++|+++|++.|...+....+++|.+|+++
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~----- 150 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYAT----------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR----- 150 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHH----------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-----
Confidence 99999999998887732110 000001257899999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHh--------hcccchhhHHHHHHH
Q 008020 182 QMAYFFSRFFFVISTGTLMAVTVLVYI--------QDEVGRSWGYGICSI 223 (581)
Q Consensus 182 ~r~~~~~~~~~~~~~g~~i~~~~~~~l--------~~~~g~~~~f~i~~~ 223 (581)
|++++++.....++|..+++.+++.+ .+.+|||++|++..+
T Consensus 151 -rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 -KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 99999998888888888887777665 246799999987543
No 62
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.88 E-value=7.2e-20 Score=192.22 Aligned_cols=366 Identities=10% Similarity=-0.010 Sum_probs=227.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH-HHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT-VQTF 108 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~-~~~~ 108 (581)
..+.+....++...++-...+++|.|++ ++|++.++.+++.+.+.+...++++++|.++||+ ||++....... ...+
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l 82 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAI 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 3455667777777777778899999986 6899999999999999999999999999999998 98543322211 1111
Q ss_pred HHH-HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 109 GTG-LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
..+ .+..+ ++.+.+++.|.+++.+.+...|...++..+. +++ |++.+
T Consensus 83 ~~~~~~~~~------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~ 130 (382)
T TIGR00902 83 FAAAFSAGA------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDY 130 (382)
T ss_pred HHHHHHHhh------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCc
Confidence 111 22222 2378888999999999888888888876543 344 88899
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL 267 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 267 (581)
+......++|..++|.+++++.+++||+..|++..+...+.++ .....++.+++++ +++ .
T Consensus 131 g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~----------------- 190 (382)
T TIGR00902 131 GKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDA-IPE-D----------------- 190 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCcc-ccc-c-----------------
Confidence 9999999999999999999999999999998876544332222 2222221100000 000 0
Q ss_pred CCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhh
Q 008020 268 PSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTY 346 (581)
Q Consensus 268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 346 (581)
+ . ...+ ...+..+.|+++.... .++........+
T Consensus 191 --------------~----~-------------------------~~~~--~~~~~l~~~~~~~~l~~~~l~~~~~~~~~ 225 (382)
T TIGR00902 191 --------------E----S-------------------------QGDS--AFIALLKNPMNLRFLAAVCLIQGAHAAYY 225 (382)
T ss_pred --------------c----c-------------------------ccch--hHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000 0001111122222221 122222222222
Q ss_pred ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 008020 347 AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASA 426 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~ 426 (581)
...+ .+... .+.+ ....+.+..+..+..++...+.+++. +| .+.++.+.++.++..+....+
T Consensus 226 ~~~~-~~l~~-~g~s------~~~~g~l~~~~~~~~i~~~~~~~~l~----~r------~g~~~~l~~~~~~~~~~~~~~ 287 (382)
T TIGR00902 226 GFSA-IYWQA-AGIS------ASATGLLWGIGVLAEIIIFAFSNKLF----QN------CSARDLLLISAIACVGRWAII 287 (382)
T ss_pred HHHH-HHHHH-CCCC------HhHHHHHHHHHHHHHHHHHHHhHHHH----hh------CCHHHHHHHHHHHHHHHHHHH
Confidence 2211 11111 1111 11122333344444555555555444 33 234445777888888777666
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH-HHHhHHHHHHHH
Q 008020 427 SVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL-TTLSLGFFFSSL 505 (581)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~~g~~ 505 (581)
+..+ +.+.++...++.++.++...+....++.+. |++.|++++++++ ....+|..+++.
T Consensus 288 ~~~~-------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~ 347 (382)
T TIGR00902 288 GAIE-------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTA 347 (382)
T ss_pred HhHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 335566667899999999999999999988 9999999999987 577899999999
Q ss_pred HHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHH
Q 008020 506 LVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGL 549 (581)
Q Consensus 506 ~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~ 549 (581)
+.|.+.+.. + ...|++.+++.++++++
T Consensus 348 ~~G~l~~~~----------------g-~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 348 FAGFIYPTL----------------G-AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHhc----------------c-HHHHHHHHHHHHHHHHH
Confidence 998875321 1 23466777777665443
No 63
>PRK11043 putative transporter; Provisional
Probab=99.88 E-value=1.1e-19 Score=192.11 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020 41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120 (581)
Q Consensus 41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 120 (581)
..++...+.+.++. +++++|.+.++.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.+++.++.
T Consensus 18 ~~~~~~~~~p~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--- 92 (401)
T PRK11043 18 GFLATDMYLPAFKA-IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE--- 92 (401)
T ss_pred HHHHHHHHHhhHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc---
Confidence 33334334443433 5678999999999999999999999999999999998 999999999988888888777662
Q ss_pred CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM 200 (581)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 200 (581)
+.+.+++.|++.|++.+...+...+++.|.+++++ +++.++..+...++|..+
T Consensus 93 ---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 145 (401)
T PRK11043 93 ---------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPAL 145 (401)
T ss_pred ---------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHH
Confidence 27788999999999988877888889999999887 888888888888899999
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 201 AVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 201 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+|.+++++.+..||++.|++..+..++..+..+.
T Consensus 146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999899999998777666555444433
No 64
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.88 E-value=1.2e-19 Score=189.91 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020 44 STMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR 123 (581)
Q Consensus 44 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (581)
+...+.+.+|.+.+ ++|++..+.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.+++..+.
T Consensus 6 ~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~------ 77 (377)
T PRK11102 6 AIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ------ 77 (377)
T ss_pred HHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence 33445577777664 6899999999999999999999999999999998 999999999999999888887762
Q ss_pred CCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHH
Q 008020 124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVT 203 (581)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 203 (581)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.
T Consensus 78 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 78 ------------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred ------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 27778999999999999999999999999999888 999999999999999999999
Q ss_pred HHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020 204 VLVYIQDEVGRSWGYGICSICMFTAILIF 232 (581)
Q Consensus 204 ~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 232 (581)
+++.+.+..+|++.|++..+..++..+..
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 99999988899999987766655544433
No 65
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.87 E-value=2.2e-20 Score=199.77 Aligned_cols=175 Identities=9% Similarity=-0.026 Sum_probs=134.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.++...+...+.......+...+ +++++ +|++.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~-p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 28 VFLGIFFGYAAYYLVRKNFALAM-PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHhccHHhhh-HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHH
Confidence 33444444444433333334333 46665 599999999999999999999999999999999 9999999998888888
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.+++....+.. .+...+++.|++.|++.|...+.....+.|.+|+++ |++++++
T Consensus 105 ~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~ 158 (438)
T TIGR00712 105 MLLMGFVPWAT--------------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSI 158 (438)
T ss_pred HHHHhcccccc--------------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHH
Confidence 87765542110 135667888999999999988888899999999999 9999999
Q ss_pred HHHHHHhhHHHHHHHHHH-hhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 190 FFFVISTGTLMAVTVLVY-IQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~-l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
++...++|+.+++.+.+. +.+..+||..|++.++..++..+..+
T Consensus 159 ~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 159 WNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAF 203 (438)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877665 44456899999987776655443333
No 66
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.87 E-value=1.6e-19 Score=194.62 Aligned_cols=359 Identities=14% Similarity=0.119 Sum_probs=235.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.+..+.+..+..+++......-++-++. ++.-|+...+.+..+..+...+..+++|.++||+ .|||+++.+-++.++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 35566667777777777666655655554 4456888999999999999999999999999999 999999999887776
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
..+.+++...... .+.+.+++..++.|++.+...|+.++++.|.+|+++ ..++.+
T Consensus 88 ~~~~L~~l~~~~~-------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~a 142 (524)
T PF05977_consen 88 VALLLAVLAFFGL-------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANA 142 (524)
T ss_pred HHHHHHHHHHhCc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHH
Confidence 6554443322222 247888999999999999999999999999999998 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccC
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELP 268 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 268 (581)
+.....|+...+||.++|.+....|-.++|.+.+++.++.+..+...+++.+.+ ..+.+...+.+...++
T Consensus 143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~G~r------- 212 (524)
T PF05977_consen 143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALREGLR------- 212 (524)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHHHHH-------
Confidence 999999999999999999998888999999998888777665554443321111 1111111100000000
Q ss_pred CCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020 269 SSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQ 348 (581)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 348 (581)
+ .... ...+..+. ..+....+...+..
T Consensus 213 -----------------------y-------------------------v~~~--~~l~~~l~---~~~~~~l~~~a~~a 239 (524)
T PF05977_consen 213 -----------------------Y-------------------------VRSS--PPLRSVLL---RSFLFNLFASAVWA 239 (524)
T ss_pred -----------------------H-------------------------Hhcc--hHHHHHHH---HHHHHHHhhhHHHH
Confidence 0 0000 01111111 11111111111111
Q ss_pred ccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008020 349 MITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASV 428 (581)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~ 428 (581)
....+..+ ..+.. ....+.+....+++.++.+.+..++ +++ .+..+.+..+.++.+++++.+++
T Consensus 240 LlPl~a~~--~l~~~----a~~yGll~a~~gvGai~Gal~~~~l-----~~~-----~~~~~lv~~~~~~~a~~~~~lal 303 (524)
T PF05977_consen 240 LLPLFARD--VLGGG----ASGYGLLLAAFGVGAILGALLLPRL-----RRR-----LSSRRLVLLASLLFALALLLLAL 303 (524)
T ss_pred hhhHHHHH--HhCCc----HHHHHHHHHHHHHHHHHHHHHHHHh-----hcc-----cCcchhhHHHHHHHHHHHHHHhc
Confidence 11111111 11111 1112334444555555555544433 221 22223355666666666666655
Q ss_pred HHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHH
Q 008020 429 VEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVS 508 (581)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~ 508 (581)
. .+.+..++.+++.|++.....+..++.+++.+|+++||+.++++++....+..+|..+.|
T Consensus 304 ~-------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G 364 (524)
T PF05977_consen 304 S-------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG 364 (524)
T ss_pred c-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 233455667788899999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 008020 509 IVKA 512 (581)
Q Consensus 509 ~i~~ 512 (581)
.+.+
T Consensus 365 ~la~ 368 (524)
T PF05977_consen 365 FLAD 368 (524)
T ss_pred HHHH
Confidence 8754
No 67
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.87 E-value=2.6e-22 Score=209.76 Aligned_cols=365 Identities=36% Similarity=0.563 Sum_probs=233.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCC
Q 008020 96 YRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEK 175 (581)
Q Consensus 96 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~ 175 (581)
.|+++++.+++++|.+++.++...+. .+++.+...++++..++++|.|+..|++.++++|+++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~---------------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~ 65 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPS---------------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED 65 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSS---------------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcch---------------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence 37889999999999999777744222 123345678999999999999999999999999999987
Q ss_pred -ChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccccccc-CCCCChhHH-H
Q 008020 176 -DEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYK-KCSGSPIVH-I 252 (581)
Q Consensus 176 -~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 252 (581)
+++ |.+++++++++.|+|..+++.+.++++++.||.+.|.++.+..+++++.++..+++++++ ++.+++... .
T Consensus 66 ~~~~----~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~ 141 (372)
T PF00854_consen 66 DDSR----RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI 141 (372)
T ss_dssp TTTH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred chhh----hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence 433 999999999999999999999999999999999999999999999999999998888776 555555554 3
Q ss_pred HHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCc-ccCcchhHhHHHHHH
Q 008020 253 CQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWT-LCPVTRVEEVKMVIR 331 (581)
Q Consensus 253 ~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 331 (581)
..++....+++....|....++...................+ ....... ....|+ .++.+++++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~k~~~~ 212 (372)
T PF00854_consen 142 KLVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFIR-AAVIFFP--------EIFFWALFCQVQRVEELKALIR 212 (372)
T ss_dssp HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHCC--------CHHHHTTTSSTTTHHHCCHHHC
T ss_pred HHHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhcc-chhhhhh--------hhhhcccCCccceeeeeeeeee
Confidence 444444455444444432222211100000000000000000 0000000 000010 013344555666666
Q ss_pred HHHHHHHHHHHHhhhccccceeeeecccccccccc-ccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhH
Q 008020 332 LLPIWATTILFWSTYAQMITFSVEQATTMQRSIGN-FKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQ 410 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~ 410 (581)
.+..+.+...++..+.+...+...+....+....+ +.+|+..+++++.+.++++.|+.+++++|+.++.. .++...
T Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~---~~~~~~ 289 (372)
T PF00854_consen 213 FLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGI---QPSPPQ 289 (372)
T ss_dssp HHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT---------HH
T ss_pred ccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcc---cchhhh
Confidence 66666667777777777666666666666666667 89999999999999999999999999999988322 578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHH
Q 008020 411 LIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTG 490 (581)
Q Consensus 411 ~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g 490 (581)
++.+|+++..++++.....+..+......++ ..+.++.+..+++..+++-+..+...+...|.+|++..+..+|
T Consensus 290 k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~ 363 (372)
T PF00854_consen 290 KFGIGMVFAILAMFVAAIVEIRRLCYAQPCG------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMG 363 (372)
T ss_dssp HHHHH-HHHHHHHHTTTHHHH---HH----T------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccccC------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHH
Confidence 9999999999998887777654433333322 3444677799999999999999999998888888888888888
Q ss_pred HHHHHHh
Q 008020 491 LFLTTLS 497 (581)
Q Consensus 491 i~~~~~~ 497 (581)
+++....
T Consensus 364 ~~~~~~~ 370 (372)
T PF00854_consen 364 IWFALSA 370 (372)
T ss_dssp HHHHHH-
T ss_pred HHHHHhc
Confidence 7776543
No 68
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.87 E-value=9e-21 Score=197.65 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=131.4
Q ss_pred HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 008020 52 LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD 131 (581)
Q Consensus 52 l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (581)
..+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++.
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-------------- 81 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST-------------- 81 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence 34467889999999999999999999999999999999999 999999999999999998888772
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHH-HHHHHhhc
Q 008020 132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAV-TVLVYIQD 210 (581)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~-~~~~~l~~ 210 (581)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++| ++++.+.+
T Consensus 82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 145 (379)
T TIGR00881 82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAE 145 (379)
T ss_pred ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999999999988 99999999999999999999 57777777
Q ss_pred ccchhhHHHHHHHHHHHHHHH
Q 008020 211 EVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 211 ~~g~~~~f~i~~~~~~~~~~~ 231 (581)
..+|++.|++.+++.++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ 166 (379)
T TIGR00881 146 LYSWHWVFIVPGIIAIIVSLI 166 (379)
T ss_pred cCCchhHHHHHHHHHHHHHHH
Confidence 889999998777655544333
No 69
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.87 E-value=3.1e-19 Score=188.09 Aligned_cols=169 Identities=13% Similarity=0.072 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020 31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT 110 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 110 (581)
+.+.....+....+.....+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence 344555555566666666666655 4567999999999999999999999999999999998 99999999999988888
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 190 (581)
+++..+. +.+.+++.|+++|++.+...+...+++.|.+|+++ |+++.++.
T Consensus 83 ~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~ 132 (392)
T PRK10473 83 LLCSLAE------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLL 132 (392)
T ss_pred HHHHHhC------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 8877652 26778899999999999988999999999999988 99999999
Q ss_pred HHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 191 FFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 191 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
+...++|..++|.+++.+.+..||++.|++..+..++..+.
T Consensus 133 ~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 133 NGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888889999998777655544443
No 70
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.87 E-value=6.8e-20 Score=199.73 Aligned_cols=405 Identities=14% Similarity=0.107 Sum_probs=235.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHH
Q 008020 66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGV 145 (581)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (581)
+.+++.+...++..++.+++|+++|++ |||++++++.+.+.+|.++++++. +...
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~------------------------~~~~ 144 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP------------------------SWYQ 144 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh------------------------hHHH
Confidence 458999999999999999999999998 999999999999999999999983 3889
Q ss_pred HHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc-cchhhHHHHHHHH
Q 008020 146 LYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE-VGRSWGYGICSIC 224 (581)
Q Consensus 146 l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~ 224 (581)
++++|++.|+|.|+....++.+++|..|++. |+...+..+...++|..++..++....+. .+||..+.+..+.
T Consensus 145 l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~ 218 (513)
T KOG0254|consen 145 LIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIP 218 (513)
T ss_pred HHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999998 99999999999999999996555444332 4899888877776
Q ss_pred HHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCC
Q 008020 225 MFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDY 304 (581)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (581)
.++..+..++..+..+..-..+ ...+..+.+....... +++.... ..... .....+...
T Consensus 219 ~~~~~~~~~~~pesp~~L~~~g-~~~~a~~~l~~l~g~~----~~~~~~~---------------~~~~~-~~~~~~~~~ 277 (513)
T KOG0254|consen 219 AVILALGMLFLPESPRWLIEKG-RLEEAKRSLKRLRGLS----PEDVEVE---------------LELLK-IKLLVEAEV 277 (513)
T ss_pred HHHHHHHHHhCCCChHHHHHcC-ChHHHHHHHHHHhCCC----CcchHHH---------------HHHHH-HHHHHhhhc
Confidence 6655555333222111111111 1111111221111100 0000000 00000 000000000
Q ss_pred CCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHH
Q 008020 305 SEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILI 384 (581)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (581)
.+ ....|+.+.. ...+|+......+..++.. ........+. ... .+..+...+......+..+..++
T Consensus 278 ~~----~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~-----tG~~~~~~Y~-~~i-f~~~g~~~~~~~~~~~~~~v~~~ 344 (513)
T KOG0254|consen 278 AE----GKASWGELFS--PKVRKRLIIGLLLQLFQQL-----TGINYVFYYS-TTI-FKSAGLKSDTFLASIILGVVNFL 344 (513)
T ss_pred cc----ccccHHHhcC--cchHHHHHHHHHHHHHHHH-----hCCceEEeeh-HHH-HHhcCCCCchHHHHHHHHHHHHH
Confidence 00 0001111111 1122222222211111111 1111111111 111 01011111112222222333333
Q ss_pred HHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHH
Q 008020 385 TLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSG 464 (581)
Q Consensus 385 ~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~ 464 (581)
...+...++||++||. .+..|...+.+++++++.......+... ......+..++..+++....
T Consensus 345 ~t~~~~~lvd~~gRr~----------lll~s~~~m~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~f 408 (513)
T KOG0254|consen 345 GTLVATYLVDRFGRRK----------LLLFGAAGMSICLVILAVVGVFALYYPN------SSKGAGWLAIVFLCLFIFSF 408 (513)
T ss_pred HHHHHHHHHHHhccHH----------HHHHhHHHHHHHHHHHHHHHHHhccCCC------cccchhHHHHHHHHHHHHHH
Confidence 3333345666665553 3778888888888877765332100000 00012223333344445555
Q ss_pred HHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHH
Q 008020 465 EGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSF 544 (581)
Q Consensus 465 ~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~ 544 (581)
.....|..|.+..|.+|.+.|+++.++....+++.+.+-......+.... +....|+.+++.+.
T Consensus 409 ~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~----------------~~~~~f~~f~~~~~ 472 (513)
T KOG0254|consen 409 AIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL----------------GIGGTFGYFGGICL 472 (513)
T ss_pred hcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cccchHHHHHHHHH
Confidence 55666888999999999999999999999999998888776666543211 01234666667777
Q ss_pred HHHH-HHHhhhccccccccCCchh
Q 008020 545 INFG-LFLLCASWYKRKKAKQVPE 567 (581)
Q Consensus 545 i~~~-~~~~~~~~~~~~~~~~~~~ 567 (581)
+... +.+++.+|+|+++.|+.++
T Consensus 473 ~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 473 LSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHHHHHheEEcccCCCCcHHHHHH
Confidence 7766 7889999999999988765
No 71
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.87 E-value=2.8e-19 Score=191.08 Aligned_cols=355 Identities=13% Similarity=0.082 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHHHHHHHHHHH
Q 008020 38 EICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYR-TIAIFATVQTFGTGLL 113 (581)
Q Consensus 38 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~-~l~~~~~~~~~~~~~~ 113 (581)
.+..+.....+..+++.|+++++|+++.+.+.+.++..+...+..|+.|+++||. +|||| .++++.....++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 3455666667778899999999999999999999999999999999999999983 28755 5667777777777766
Q ss_pred HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHHHHHHH
Q 008020 114 AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFF 192 (581)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ 192 (581)
......+ .......+++.+++.+++.+...+...++..|..++ ++ |+++.++.+.
T Consensus 88 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~ 143 (437)
T TIGR00792 88 FTTPDFS------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRF 143 (437)
T ss_pred HhCCCCC------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHH
Confidence 6542111 112345667777888888888888888999998754 44 8999999888
Q ss_pred HHHhhHHHHHHHHHHhh-------cccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020 193 VISTGTLMAVTVLVYIQ-------DEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV 265 (581)
Q Consensus 193 ~~~~g~~i~~~~~~~l~-------~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (581)
..++|..+++.+.+.+. +..+|++.+.+.+++.++..++.+...++.+.+.+..++
T Consensus 144 ~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~----------------- 206 (437)
T TIGR00792 144 GATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE----------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-----------------
Confidence 88888877766655443 245899888777666555444433322211100000000
Q ss_pred ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020 266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST 345 (581)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 345 (581)
+.....+ .+ +...+.|.+.......+.....+..
T Consensus 207 ----------------------~~~~~~~-------------------~~-----~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (437)
T TIGR00792 207 ----------------------KKLSLKQ-------------------IF-----KALFKNDQLLILCLAYLFYNLAFNI 240 (437)
T ss_pred ----------------------cCCCHHH-------------------HH-----HHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 0001112222222221111111112
Q ss_pred hccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 008020 346 YAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMAS 425 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~ 425 (581)
......++...... + ....+.+.....+..++..++.+++.+|+.+| +.+..+.++.+++++.
T Consensus 241 ~~~~~~~~~~~~~~-~------~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~----------~~~~~~~~~~~~~~~~ 303 (437)
T TIGR00792 241 KNGVQVYYFTYVLG-D------PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK----------ILFAGGILLMVLGYLI 303 (437)
T ss_pred HcchhheeEeeecC-C------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHH
Confidence 22122222221111 0 11122333444566667777777776554433 2255666666666554
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-------cchhHHHHHHHHHHHhH
Q 008020 426 ASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-------KGMKTMSTGLFLTTLSL 498 (581)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~l 498 (581)
+.+.. .+.+.+++..++.+++.+...+..++++.|..| ++.+|.++|++++...+
T Consensus 304 ~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 365 (437)
T TIGR00792 304 FFFAG------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL 365 (437)
T ss_pred HHHcc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH
Confidence 44321 122334555677888888888999999888865 56789999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 008020 499 GFFFSSLLVSIVKAAT 514 (581)
Q Consensus 499 g~~~g~~~~~~i~~~~ 514 (581)
|..+++.+.+.+.+..
T Consensus 366 g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 366 GQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999887654
No 72
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.87 E-value=1.9e-19 Score=189.91 Aligned_cols=389 Identities=9% Similarity=0.022 Sum_probs=230.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.+|......++...++..+.++++.|+++++|++..+.+++.+.+.+...+++++.|+++||+ |||+.++.+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4578888889999999999999999999999999999999999999999999999999999999 999999887766555
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+..........+. ........+++.+++.+++.+...+....+..|..+ + ++..++
T Consensus 81 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g 136 (396)
T TIGR00882 81 LFAPFFIYVFGPL----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYG 136 (396)
T ss_pred HHHHHHHHHhhhH----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccc
Confidence 4433211100000 000113345667888888888888888777766432 2 334566
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccC
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELP 268 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 268 (581)
......++|..+||.+++.+.+ .+|+.+|++.+++.++..+..+...++.+++ +.... . .+ +
T Consensus 137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----------~--~~-~ 198 (396)
T TIGR00882 137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVAN----------A--LG-A 198 (396)
T ss_pred hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhc----------c--cc-c
Confidence 6677788999999999998865 5999999987766665544433322221110 00000 0 00 0
Q ss_pred CCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhh-c
Q 008020 269 SSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTY-A 347 (581)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~ 347 (581)
+ .+..+. .+. .+..+.|.++......+.....+... .
T Consensus 199 ~-----------------~~~~~~--------------------~~~-----~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 236 (396)
T TIGR00882 199 N-----------------ASAFSL--------------------KLA-----LELFRQRKFWMFVLYVVGVACVYDVFDQ 236 (396)
T ss_pred c-----------------cCCCCH--------------------HHH-----HHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 000 00000111212211111111111111 1
Q ss_pred cccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008020 348 QMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS 427 (581)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~ 427 (581)
+.+.++.......... ....+....+..+...+.....+++.+|..+|+ .+.++.++.+++.....
T Consensus 237 ~~~~y~~~~~~~~~~~----~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~----------~l~~~~~l~~l~~~~~~ 302 (396)
T TIGR00882 237 QFANFFTSFFATPQQG----TRVFGYVTTMGELLNALIMFCAPLIINRIGAKN----------ALLIAGTIMSVRIIGSS 302 (396)
T ss_pred HHHHHHHHhccccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------hHHHHHHHHHHHHHHHH
Confidence 1111111100000000 001122334444445555555566655544442 25566666666554433
Q ss_pred HHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH-HHHHHhHHHHHHHHH
Q 008020 428 VVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL-FLTTLSLGFFFSSLL 506 (581)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~~g~~~ 506 (581)
.. .+.+++++..++.+++..........+..+..|++.+++..+. ++....+|+.+++.+
T Consensus 303 ~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l 363 (396)
T TIGR00882 303 FA-------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL 363 (396)
T ss_pred hc-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 22 2344555667778888777777777888889999999987776 678899999999999
Q ss_pred HHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 008020 507 VSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFL 551 (581)
Q Consensus 507 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~ 551 (581)
.|.+.+.. ++...|.+.+++.++..++..
T Consensus 364 ~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 364 AGNMYDSI----------------GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHH
Confidence 98775321 235667777777666655443
No 73
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.87 E-value=2.8e-19 Score=189.81 Aligned_cols=389 Identities=12% Similarity=0.060 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGR-YRTIAIFATVQTFGT 110 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-r~~l~~~~~~~~~~~ 110 (581)
..+.+..++...++-.+.++++.|+++++|++..|.|++.+.+.++..++++++|+++||+ || |+++.++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence 3456667777777777889999999999999999999999999999999999999999998 65 778888877776766
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcc--------cCCCCCChHHHhH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGT--------DQFDEKDEKEKTQ 182 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~--------~~~~~~~~~~~~~ 182 (581)
.+..+.. +.+.+++.|++.+++.+...+...+... |......
T Consensus 84 ~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------ 133 (418)
T TIGR00889 84 FFAAQVT------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------ 133 (418)
T ss_pred HHHHHhc------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------
Confidence 6666552 2666778888888887766666555432 2222223
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCC-ChhHHHHHHHHHHHh
Q 008020 183 MAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSG-SPIVHICQVVVAARK 261 (581)
Q Consensus 183 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 261 (581)
|.+.++ .+|..+||.+++.+.....|. +|++.++..++..++.+. .++.++.++++ ......
T Consensus 134 ~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~--------- 196 (418)
T TIGR00889 134 PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKMSIKVM--------- 196 (418)
T ss_pred Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccccCHHHH---------
Confidence 445444 468888998888874433344 455555444444433222 22211100000 000000
Q ss_pred hcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHH
Q 008020 262 KRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTI 340 (581)
Q Consensus 262 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 340 (581)
...+. .... ++ +++...... ++...
T Consensus 197 --------------------------~~~~~---~~~~------------------------k~-~~~~~~~~~~~~~~~ 222 (418)
T TIGR00889 197 --------------------------LGLDA---FILF------------------------KN-KRMAIFFFFSMLLGA 222 (418)
T ss_pred --------------------------hhhhH---HHHh------------------------cC-CCeeeHHHHHHHHHh
Confidence 00000 0000 00 111111111 11111
Q ss_pred HHHhhhccccceeeeeccccccccc-ccc-ccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHH
Q 008020 341 LFWSTYAQMITFSVEQATTMQRSIG-NFK-IPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFL 418 (581)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l 418 (581)
.....+... ..+... .+.+.... ++. -..+....+..+..++...+.+++.+|+.+| +.+..+.++
T Consensus 223 ~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r----------~~l~~~~~~ 290 (418)
T TIGR00889 223 PLQITNIFG-NGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK----------KVMLLSLVA 290 (418)
T ss_pred HHHHHHHhH-HHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHH
Confidence 111111111 111110 00000000 000 0123344455556666666666666555444 236667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH-HHHh
Q 008020 419 SALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL-TTLS 497 (581)
Q Consensus 419 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~ 497 (581)
.++++..+...... ..+.+.+++..++.+++++...+....++.|.+|++.||+++|+.+ ..+.
T Consensus 291 ~~v~~~l~~~~~~~---------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~ 355 (418)
T TIGR00889 291 WALRFGFFAYGDPE---------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG 355 (418)
T ss_pred HHHHHHHHHHcCcc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 66665555432100 0112334556678889998888999999999999999999999997 6788
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020 498 LGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKR 559 (581)
Q Consensus 498 lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 559 (581)
+|..+|+.+.|.+.+..+... ..++...|++.+++.++..+.++++.++.++
T Consensus 356 lg~~iGp~l~G~l~~~~g~~~----------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 356 FGSLLGYILSGVMVEKMFAYG----------TFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred hHHHHHHHHHHHHHHHhcccc----------CCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999998765432110 0123567777888877877777777665433
No 74
>PRK10133 L-fucose transporter; Provisional
Probab=99.86 E-value=4.7e-19 Score=189.11 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=126.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+...+..+.+..+...+........+|. +++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++..+..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 3445666666667777776666665655 5889999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
+++.+++..+...+ ++..++++|+++|+|.|...+..++++.|..++++ |.+.
T Consensus 102 ~~~~~l~~~~~~a~---------------------~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~ 154 (438)
T PRK10133 102 ALGAALFWPAAEIM---------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR 154 (438)
T ss_pred HHHHHHHHHHHhcC---------------------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHH
Confidence 99998764221112 37889999999999999999999999998766655 6667
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhh
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQ 209 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~ 209 (581)
++.......+|..+||.+++.+.
T Consensus 155 ~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 155 LNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999998876543
No 75
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.86 E-value=2.5e-19 Score=188.67 Aligned_cols=178 Identities=12% Similarity=0.010 Sum_probs=129.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLG-GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
|.++...+..+.. +......+.+...+. +++|+|.+|.+++.+++.+.+.++.++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~~~f~~~-F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLA-FCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 5555554444444 444444444555554 48999999999999999999999999999999999 99999999999988
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
+.+++.+++... ..+++..+++.|++.|++ |...+.....+++++|+++ ||+++
T Consensus 112 i~~~~~~~a~~~-------------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~ 165 (462)
T PRK15034 112 IPCVWLGIAVQN-------------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSAL 165 (462)
T ss_pred HHHHHHHHHHcc-------------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHH
Confidence 888877765110 012488899999999998 6678889999999999999 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhh-----c-------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQ-----D-------------EVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~-----~-------------~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
++.....++|..+++.+.+.+. . ..+|+.++++-.+..+++.++.++
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987666777766555543322 1 234666666555555454444444
No 76
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.86 E-value=5.1e-19 Score=211.59 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=124.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCh--hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPS--ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+.+...+++.++..+...+....+..++...++.+. ...+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 455556666666666665555555556655555544 3468888999999999999999999999 9999999988776
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
+++.++..++...+ +.+.++++|+++|++.+...+...+++.|.+|+++ |+++
T Consensus 88 ~~~~~~~~~~~~~~---------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~ 140 (1146)
T PRK08633 88 VGLTLLIVLAYYLG---------------------WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRA 140 (1146)
T ss_pred HHHHHHHHHHHHHc---------------------cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhh
Confidence 66665544432212 27889999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcc
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDE 211 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~ 211 (581)
+++...+.++|.++|+.+++++.+.
T Consensus 141 ~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 141 NGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998765
No 77
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.86 E-value=5.7e-20 Score=191.44 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=135.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.++...+..+......+...+.+|.++++++|++..+.+++.+.+.++..++++++|+++||+ |||+.+.++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 456777788888888888888888889999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.++++++.. +.+.+++.|+++|++.+. .+...++++|.+|+++ |+++.++
T Consensus 81 ~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~ 130 (366)
T TIGR00886 81 CLWAGLAVQ-----------------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGL 130 (366)
T ss_pred HHHHHHHhh-----------------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHH
Confidence 888877720 378889999999999664 4567889999999988 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHhhc----------ccchhhHHH
Q 008020 190 FFFVISTGTLMAVTVLVYIQD----------EVGRSWGYG 219 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~----------~~g~~~~f~ 219 (581)
.....++|..+++.+++.+.. ..+|++.|+
T Consensus 131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~ 170 (366)
T TIGR00886 131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170 (366)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence 888888888888777766543 347999984
No 78
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.85 E-value=6.7e-20 Score=194.23 Aligned_cols=376 Identities=15% Similarity=0.124 Sum_probs=240.3
Q ss_pred ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCC
Q 008020 59 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHA 138 (581)
Q Consensus 59 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (581)
.++++..+.+++.+.+..+..++++++|+++||+ |-|+++..+.++.++++++..++....
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~~------------------ 127 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASIG------------------ 127 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 5889999999999999999999999999999999 999999999999999999998885422
Q ss_pred chhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc-cchhhH
Q 008020 139 SGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE-VGRSWG 217 (581)
Q Consensus 139 ~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~ 217 (581)
.+.+++.|+++|++.|...|+...+.+++.|+++ |+++.++...+..+|.+++..++|++.+. .||+.+
T Consensus 128 ----~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si 197 (466)
T KOG2532|consen 128 ----FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI 197 (466)
T ss_pred ----chhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence 4478999999999999999999999999999999 99999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhcccc
Q 008020 218 YGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKAS 297 (581)
Q Consensus 218 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (581)
|++.++..++..++++....+.+.+++.-++.+ .+.+ ++..
T Consensus 198 fY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~E--l~~I-------------------------------------~~~k 238 (466)
T KOG2532|consen 198 FYVFGIVGLIWFILWFLFYSDSPSKHPNISEKE--LKYI-------------------------------------EKGK 238 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH--HHHH-------------------------------------Hhcc
Confidence 998887766665554443332222222111100 0000 0000
Q ss_pred ccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHHHhhhccccceeeeeccccccccccccccchhhhh
Q 008020 298 VVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTV 376 (581)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (581)
...+.. .....||+.. ...+.++..+.. +.....++....+.++++ .+..+.+.. ..+.+.+
T Consensus 239 ~~~~~~-----~~~~vP~~~i-----~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~-~~VL~f~v~------~~G~~sa 301 (466)
T KOG2532|consen 239 SEAHVK-----KKPPVPYKAI-----LTSPPVWAIWISAFGGNWGFYLLLTYLPTYL-KEVLGFDVR------ETGFLSA 301 (466)
T ss_pred cccccC-----CCCCCCHHHH-----HcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhCCChh------hhhHHHH
Confidence 000000 0023455211 111222222211 122222233333333332 211222222 3456677
Q ss_pred hhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhh
Q 008020 377 FFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLI--AIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYL 454 (581)
Q Consensus 377 ~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l--~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 454 (581)
+..+...+...+.+.+.|++.+| .. .....+++ .++....++.++.+++... .+.+..
T Consensus 302 lP~l~~~~~k~~~g~lsD~l~~~-~l--s~t~~rkifn~i~~~~~ai~l~~l~~~~~-----------------~~~~~a 361 (466)
T KOG2532|consen 302 LPFLAMAIVKFVAGQLSDRLTFR-IL--SETTVRKIFNTIAFGGPAVFLLVLAFTSD-----------------EHRLLA 361 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cC--chHhHHHHHHhHHHHHHHHHHHeeeecCC-----------------CcchHH
Confidence 77777777777778887777665 22 23344444 4455555555555554421 111112
Q ss_pred HHHHHHHHHHHHHHh-hhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhh
Q 008020 455 IPQFFLVGSGEGFMY-TGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLD 533 (581)
Q Consensus 455 i~~~~l~g~~~~~~~-~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~ 533 (581)
++. ...+.+..... +..+.-..+.+ ++..+..+|+.++...+.++++|.+++.+.. ++ +...+.
T Consensus 362 ~~~-l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~------------~~-t~~eW~ 426 (466)
T KOG2532|consen 362 VIL-LTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT------------DN-TREEWR 426 (466)
T ss_pred HHH-HHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC------------CC-CHHHHH
Confidence 222 22223333223 33333333324 5788999999999999999999999986642 01 122336
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008020 534 CFYGLLAALSFINFGLFLLCA 554 (581)
Q Consensus 534 ~~f~~~~~~~~i~~~~~~~~~ 554 (581)
.+|++.+++.+++.+++.++.
T Consensus 427 ~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 427 IVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHhchheeEee
Confidence 789999999999888777774
No 79
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.6e-19 Score=178.60 Aligned_cols=391 Identities=16% Similarity=0.064 Sum_probs=255.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
+.++|.+++ ....+...+..+.....+.+++.+++|+|+.|.+++.++..+...+..++-|.+.||+ |.|+...++.+
T Consensus 10 ~~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 444556554 4444555566666777788889999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+..+-.+..+++...++ ++.+++.+++.|++ |+..+...++++..+|+++ +|
T Consensus 88 l~~IP~~~~~~a~~~~~---------------------~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG 139 (417)
T COG2223 88 LLLIPCLGLAFAVTYPS---------------------TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QG 139 (417)
T ss_pred HHHHHHHHHHHHccCCc---------------------hHHHHHHHHHHhcc-cceehcccccccccCChhh------hh
Confidence 99998888888854343 57899999999998 4556888899999999999 99
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccc---hhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHh
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVG---RSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARK 261 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (581)
.+++++. ..|+|..+...+++.+....| |+.+-.+..+..++..+..++..++.+..++..++...
T Consensus 140 ~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------- 208 (417)
T COG2223 140 LALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------- 208 (417)
T ss_pred HHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch----------
Confidence 9999999 899999999999998888888 99888877777666555555544332221111111000
Q ss_pred hcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHH
Q 008020 262 KRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTIL 341 (581)
Q Consensus 262 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 341 (581)
. +.+.+...+..+.+..+.+....
T Consensus 209 --------------------------~------------------------------~~~~v~~~~~~W~lsllY~~tFG 232 (417)
T COG2223 209 --------------------------A------------------------------QLKAVFSNKDTWLLSLLYFATFG 232 (417)
T ss_pred --------------------------h------------------------------HHHHHhcCcchHHHHHHHHHHHH
Confidence 0 00111111223333323223332
Q ss_pred HHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHH
Q 008020 342 FWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSAL 421 (581)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i 421 (581)
.++.+..+.+.+.. .+++-.....+.+.....+...+.-|+.+++.||++.++. +...+..+++
T Consensus 233 ~Fvgfs~~l~~~~~------~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv----------~~~~f~~~~~ 296 (417)
T COG2223 233 GFVGFSAYLPMYLV------TQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV----------TLAVFVGMAL 296 (417)
T ss_pred HHHHHHHHHHHHHH------HhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH----------HHHHHHHHHH
Confidence 23333222221111 1111112223344555566666777888888777766532 5666777777
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHH
Q 008020 422 GMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFF 501 (581)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~ 501 (581)
+....+...+.. ....+.+..+..++..++..++.+-..+..+...+|+ +-|...|+......+|++
T Consensus 297 ~~~~l~~~~~~~------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf 363 (417)
T COG2223 297 AAALLSLFLTGF------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGF 363 (417)
T ss_pred HHHHHHcccccc------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhcccccc
Confidence 766665442110 0012333333334444455555555555566656654 778999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020 502 FSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASW 556 (581)
Q Consensus 502 ~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~ 556 (581)
.-|...+...+.++ .....|+++..+.+++.+..+....+
T Consensus 364 ~lp~~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 364 FLPLAFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred chhHHHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988887765442 23556788888888887777766443
No 80
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.85 E-value=7.6e-19 Score=184.48 Aligned_cols=338 Identities=10% Similarity=0.006 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH----HHHHHHHHHHHHHH
Q 008020 36 GIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYR----TIAIFATVQTFGTG 111 (581)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~----~l~~~~~~~~~~~~ 111 (581)
...++..++...+.+++|.|++ ++|.|..+.|++.+++.+...++++++|.++||+ ||++ .+.+...+. ...
T Consensus 11 ~~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~ 86 (382)
T PRK11128 11 LSYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVA 86 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHH
Confidence 3356666777778889999996 5799999999999999999999999999999999 9842 222221111 111
Q ss_pred HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020 112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191 (581)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 191 (581)
....+ ++.+.+++.|.+.+++.+...|...++..+. +++ |+++++...
T Consensus 87 ~~~~~------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~ 134 (382)
T PRK11128 87 FWFGA------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVR 134 (382)
T ss_pred HHHhc------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHH
Confidence 11111 2377888899999999998889888877775 334 777788888
Q ss_pred HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCc
Q 008020 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSST 271 (581)
Q Consensus 192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~ 271 (581)
...++|..+||.+++++.+++|||..|++.++..++..+... ..++. ++++++.+ +
T Consensus 135 ~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~-----------------~--- 190 (382)
T PRK11128 135 LWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQ-----------------Q--- 190 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCcccccc-----------------c---
Confidence 888999999999999999999999999877655444433222 22211 11000000 0
Q ss_pred cccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhhcccc
Q 008020 272 ASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTYAQMI 350 (581)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 350 (581)
..+ ....+ .+..+.|.++.... .++........+...+
T Consensus 191 --------------~~~----------------------~~~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 229 (382)
T PRK11128 191 --------------ESA----------------------GWPAW-----KALLKEPTVWRFLLCVSLLQGSHAAYYGFSA 229 (382)
T ss_pred --------------ccc----------------------ccchH-----HHHHcChhHHHHHHHHHHHHHHhHhHHHHHH
Confidence 000 00000 01111122222221 1111111111111111
Q ss_pred ceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008020 351 TFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVE 430 (581)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~ 430 (581)
. +..+ .+.+ ....+.+.....+..++...+.+++.+|.. ..+.+..+.++.+++++.++..
T Consensus 230 ~-~~~~-~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~----------~~~~l~~~~~~~~~~~~~~~~~- 290 (382)
T PRK11128 230 I-YWQA-AGYS------ASTIGYLWSLGVVAEVLIFAFSNRLFRRWS----------ARDLLLLSAICGVVRWGLMGST- 290 (382)
T ss_pred H-HHHH-CCCC------HhHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHhh-
Confidence 1 1111 0111 111223333444455555555555543322 3333666777766666555433
Q ss_pred HHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH-HHHhHHHHHHHHHHHH
Q 008020 431 VKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL-TTLSLGFFFSSLLVSI 509 (581)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~~g~~~~~~ 509 (581)
.+.+.+++..++.|++++...+....+..+. |++.+++.+++.+ ..+.+|..+|+.+.|.
T Consensus 291 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 291 ------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334556677888999999999999999887 4555688999887 5667788899999987
Q ss_pred HHh
Q 008020 510 VKA 512 (581)
Q Consensus 510 i~~ 512 (581)
+.+
T Consensus 352 l~~ 354 (382)
T PRK11128 352 LYQ 354 (382)
T ss_pred HHH
Confidence 753
No 81
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.3e-20 Score=191.07 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=158.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
++.+.++..+++.++..-|.+...+ .-.++.+|.+++..|.+.+.+.+...+..|++|+++||+ .||+++.+|..+..
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWT 109 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHH
Confidence 4567777788888888888877744 346778999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++++.++++ .+++.+.+.|.+.|+|.+.+.|.++++++|.+|+.+ |++.+
T Consensus 110 ~Av~~~~fs------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~ 159 (493)
T KOG1330|consen 110 LAVFASGFS------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVL 159 (493)
T ss_pred HHHHHHHHH------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHH
Confidence 999999988 358999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGTR 237 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~ 237 (581)
+++|++..+|..+|.++++++.+..+ |||+|.+.+++.++..++.++..+
T Consensus 160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 99999999999999999999988777 999999888877766655555443
No 82
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.85 E-value=5.7e-19 Score=210.77 Aligned_cols=345 Identities=9% Similarity=-0.017 Sum_probs=197.8
Q ss_pred hccccCCCh-hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH---HHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 008020 56 LGGTMHLPS-ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT---VQTFGTGLLAISTKQPQLRPPPCQATD 131 (581)
Q Consensus 56 l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (581)
+.+..+.+. ...++..+++.+...++.+++|+++||+ |||+++..... +..+..+..... +
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~---~----------- 106 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL---N----------- 106 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---h-----------
Confidence 344443333 4467778889999999999999999999 99998644222 222222222222 1
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 008020 132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE 211 (581)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 211 (581)
+.+.++++|+++|++.++..|+..+++.|++++++ |++++++.+.+.++|.++||.++|++...
T Consensus 107 ----------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~ 170 (1140)
T PRK06814 107 ----------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS 170 (1140)
T ss_pred ----------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37889999999999999999999999999999998 99999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccc
Q 008020 212 VGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFR 291 (581)
Q Consensus 212 ~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 291 (581)
.+|++.|.+..+..++++++.+...+. +..++.........+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------------------- 217 (1140)
T PRK06814 171 GNFVILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIRSTITL-------------------------------- 217 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHHHHHHH--------------------------------
Confidence 999999855544444444333332221 11000000000000000000
Q ss_pred hhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhhccccceeeeecccccccccccccc
Q 008020 292 CLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIP 370 (581)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (581)
+ ..+.+.+.++.... ..+....+.....+++.+. ....+.+ ...
T Consensus 218 -----------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~g~~------~~~ 262 (1140)
T PRK06814 218 -----------------------L-----KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA-KETLGGD------ENV 262 (1140)
T ss_pred -----------------------H-----HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHcCCc------hHH
Confidence 0 00000111111111 1111111112222222111 1100111 111
Q ss_pred chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C-CCCc
Q 008020 371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGT--T-GTTL 447 (581)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~--~-~~~~ 447 (581)
.+.+.....++.++...+.+++..+..++. .+..+.++.+++.+.+.+..... ....... - .-..
T Consensus 263 ~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~ 330 (1140)
T PRK06814 263 ATLFLAVFSVGVAVGSFLASKLSEGRITLL----------YVPIGALLMGLFGLDLAFASSSV--PAEPAQLKSILVFLS 330 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceeee----------eehHHHHHHHHHHHHHHhccccc--ccccccccchhhhhc
Confidence 233445556666676666666643322221 12333333333332222210000 0000000 0 0000
Q ss_pred eeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020 448 PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK 511 (581)
Q Consensus 448 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~ 511 (581)
..+.+.+++..++.|++.+...+..++++++.+|++.||+++|++++.+.++..+++.+.+.+.
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233455667778899999999999999999999999999999999999999999999988774
No 83
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.84 E-value=1.2e-18 Score=182.70 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=115.2
Q ss_pred HHHHhccccC--CChhhhhhHHHH-----HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008020 52 LVTYLGGTMH--LPSATSANIVTD-----FMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP 124 (581)
Q Consensus 52 l~~yl~~~l~--~~~~~~~~~~~~-----~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (581)
...++.++.. .+.++.+.+.+. ..+...+++++.|+++||+ |||+++..+.++..++.++++++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~--- 90 (394)
T TIGR00883 15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT--- 90 (394)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh---
Confidence 4444444433 445555554432 2333456889999999998 9999999999999999888887633111
Q ss_pred CCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHH
Q 008020 125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTV 204 (581)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 204 (581)
........++++|+++|++.+...+...+++.|.+++++ |++..++...+..+|..+++.+
T Consensus 91 -------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~ 151 (394)
T TIGR00883 91 -------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALT 151 (394)
T ss_pred -------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHH
Confidence 000112468899999999999999999999999999998 9999999999999999999887
Q ss_pred HHHhh--------cccchhhHHHHHHHHHHHHHH
Q 008020 205 LVYIQ--------DEVGRSWGYGICSICMFTAIL 230 (581)
Q Consensus 205 ~~~l~--------~~~g~~~~f~i~~~~~~~~~~ 230 (581)
++.+. +.++||++|.+..+..+++..
T Consensus 152 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 152 VLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 76553 356899999877665554443
No 84
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.83 E-value=1.2e-17 Score=180.90 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=138.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc----ccchHH-HHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF----LGRYRT-IAIF 102 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~~-l~~~ 102 (581)
+|..+.++...+...+..+.....+|.|+++ .|.+.++.+.+. ..... .++.+++|.++||+ +||||. +..+
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 4456778888888888888888889999774 588988888862 22222 26889999999995 278875 6677
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhH
Q 008020 103 ATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ 182 (581)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (581)
.+...++...+++.. |. .+.+.+.+.+++.+++.+...+...++..|.+|+++
T Consensus 88 ~i~~~~~~~~~a~~~--~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------ 140 (491)
T PRK11010 88 QLLLLVAIAAMGFLE--PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------ 140 (491)
T ss_pred HHHHHHHHHHHHHcC--Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------
Confidence 777767766665541 11 247778888999999999999999999999999888
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHHHHHH
Q 008020 183 MAYFFSRFFFVISTGTLMAVTVLVYIQD-EVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 183 r~~~~~~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
|+++.++...+.++|..+++.+++++.+ ..|||..|++.+++.++..+..+
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 57999999987766655544433
No 85
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.82 E-value=2.2e-17 Score=174.73 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=138.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.++.+....+...+.. ++...+.+.+++++|++..+.+++.+.+.++..++.++.|++.||+ |||+++.++.++.+++
T Consensus 4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 3455555566666555 3443444566889999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.+++..+...+ +++.+++.|++.|+|.|...+..++++.+..|+++ |++..++
T Consensus 82 ~~l~~~~~~~~---------------------~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~ 134 (410)
T TIGR00885 82 AFLFWPAAEIM---------------------NYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNL 134 (410)
T ss_pred HHHHHHHHhhc---------------------cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHH
Confidence 88765442212 37889999999999999999999999999998888 8889999
Q ss_pred HHHHHHhhHHHHHHHHHHhhc--------------------------ccchhhHHHHHHHHHHHHH
Q 008020 190 FFFVISTGTLMAVTVLVYIQD--------------------------EVGRSWGYGICSICMFTAI 229 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~--------------------------~~g~~~~f~i~~~~~~~~~ 229 (581)
.+...++|..+||.+++.+.. ..+||++|++.++..++..
T Consensus 135 ~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 135 AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887632 2369999986665544433
No 86
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.81 E-value=4.4e-18 Score=176.76 Aligned_cols=324 Identities=13% Similarity=0.144 Sum_probs=202.5
Q ss_pred HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 008020 52 LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD 131 (581)
Q Consensus 52 l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (581)
+.+.+.+++|++.++.+++.+.+.++..++.++.|+++||+ ||||++.++.+...++.+.+ .+ +
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~---~----------- 85 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA---P----------- 85 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh---c-----------
Confidence 34456779999999999999999999999999999999999 99999999988877777665 33 2
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 008020 132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE 211 (581)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 211 (581)
+.+.+++.|++.|+|.+...+..+..+.|.++ ++ |+++++.++...++|..+++.+++.+.+.
T Consensus 86 ----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 86 ----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred ----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 26778899999999999888888888888886 46 99999999999999999999998888765
Q ss_pred c--chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcc
Q 008020 212 V--GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQ 289 (581)
Q Consensus 212 ~--g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 289 (581)
. +||+.|.+..+..++..... . ++.++++++ + .+ .+
T Consensus 149 ~~~~w~~~f~~~~~~~~~~~~~~-~--~~~~~~~~~-~----------------------~~---------------~~- 186 (355)
T TIGR00896 149 SGGHWQQALAWWALPALLALLAW-I--PQVRRRVAA-N----------------------QT---------------TT- 186 (355)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH-h--hhhccccCC-C----------------------CC---------------CC-
Confidence 4 38988876554433332221 1 111000000 0 00 00
Q ss_pred cchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHHHhhhccccceeeeecccccccccccc
Q 008020 290 FRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILFWSTYAQMITFSVEQATTMQRSIGNFK 368 (581)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (581)
....++. ..+ +........ .+....++....+.+.++ .. .+.+ .
T Consensus 187 ---------------------~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~-~g~~------~ 231 (355)
T TIGR00896 187 ---------------------RLTPVRI-----WRS-PLAWQVTVFFGLQSGLYYSLIGWLPAIL-IS-HGAS------A 231 (355)
T ss_pred ---------------------CCCCchh-----hcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCC------H
Confidence 0000000 011 111111111 111122222222222111 11 1111 1
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCce
Q 008020 369 IPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLP 448 (581)
Q Consensus 369 ~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (581)
...+.......++.++..++.+++.+|..+| ++.+..+.++.+++.+.+.+...
T Consensus 232 ~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----------------- 285 (355)
T TIGR00896 232 ATAGSLLALMQLAQAASALLIPALARRVKDQ---------RGIVAVLAVLQLVGLCGLLFAPM----------------- 285 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhccc---------hHHHHHHHHHHHHHHHHHHHhhh-----------------
Confidence 1123344455666667777777766544222 12245566666666555544311
Q ss_pred eeehhhHHHHHHHHHHHHHHhhhHHHhhhccC-CcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 008020 449 ISVFYLIPQFFLVGSGEGFMYTGQLDFFITQS-PKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAAT 514 (581)
Q Consensus 449 ~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~-P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~ 514 (581)
+..+ ...++.|++.+...|...+.+.+.. +++.++..+++.+....++..+++.+.|.+.+.+
T Consensus 286 -~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 286 -HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred -hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 1345678898888888777766544 4678899999999888999999999998876544
No 87
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.81 E-value=9e-18 Score=174.47 Aligned_cols=154 Identities=12% Similarity=0.116 Sum_probs=118.1
Q ss_pred HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc----ccchHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020 52 LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF----LGRYRTI-AIFATVQTFGTGLLAISTKQPQLRPPP 126 (581)
Q Consensus 52 l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (581)
..+.+.+++|+|.++.+..... .+...+ .+++|.++||+ +||||.+ +.+.+...+....+++...
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-------- 79 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-------- 79 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc--------
Confidence 3344455789999999998655 444444 88999999996 4898874 5666666666555554411
Q ss_pred CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020 127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV 206 (581)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 206 (581)
..+.+.+....++.+++.+...+...+++.|.+|+++ |+++.++...+.++|..+++.+++
T Consensus 80 -------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~ 140 (356)
T TIGR00901 80 -------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLAL 140 (356)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHH
Confidence 1235666667777788888888999999999999888 999999999999999999999999
Q ss_pred Hhhcccc--------hhhHHHHHHHHHHHHHHHHHH
Q 008020 207 YIQDEVG--------RSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 207 ~l~~~~g--------~~~~f~i~~~~~~~~~~~~~~ 234 (581)
.+.+..| ||..|++.+++.+++.+..++
T Consensus 141 ~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 141 VLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9888778 999999888776665555443
No 88
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.81 E-value=3.4e-23 Score=222.35 Aligned_cols=394 Identities=16% Similarity=0.113 Sum_probs=222.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHH
Q 008020 66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGV 145 (581)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (581)
+.+++.+...++..++.+++|+++||+ |||+.+.++.++..++.++..++... .+.+.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~ 104 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------------------NNFWM 104 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------------------ccccc
Confidence 467888999999999999999999999 99999999999999999999887311 13778
Q ss_pred HHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc---cchhhHHHHHH
Q 008020 146 LYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE---VGRSWGYGICS 222 (581)
Q Consensus 146 l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~---~g~~~~f~i~~ 222 (581)
+.++|++.|++.|+..+....++.|..|++. |++..++.+....+|.+++..++..+.+. .+||..+.++.
T Consensus 105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~ 178 (451)
T PF00083_consen 105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA 178 (451)
T ss_pred ccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999 99999999998899988887666444332 35999888777
Q ss_pred HHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccc---hhcccccc
Q 008020 223 ICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFR---CLDKASVV 299 (581)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 299 (581)
+..++.++...+ .||+|+|++.+++.++..+.-++.+ ..+.+ ..
T Consensus 179 ~~~l~~~~~~~~--------------------------------~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~-~~ 225 (451)
T PF00083_consen 179 IPSLLVLLLRFF--------------------------------LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEE-IE 225 (451)
T ss_pred cccccccccccc--------------------------------cccccceeccccccccccccccccccccccccc-cc
Confidence 665544333222 2334444333222111111000000 00000 00
Q ss_pred ccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHH-HHhhhccccceeeeeccccccccccccccch-hhhhh
Q 008020 300 TNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTIL-FWSTYAQMITFSVEQATTMQRSIGNFKIPAA-SLTVF 377 (581)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 377 (581)
++.+..+.....+..|+.....+. .+++++..+.+...... .+....++.+..... .+.+.. .....
T Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~----------~~~~~~~~~~~~ 294 (451)
T PF00083_consen 226 EIKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN----------AGISNSFLATLI 294 (451)
T ss_pred ccccccccccccceeeeecccccc-ccccccccccccccccccccccccccccccccc----------cccccccccccc
Confidence 000000000000011211111111 12222222211111111 001111111111110 011111 11111
Q ss_pred hHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCceeeehhhHH
Q 008020 378 FVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS-VVEVKRLAVAKANGTTGTTLPISVFYLIP 456 (581)
Q Consensus 378 ~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 456 (581)
..+..++...+...+.++++||.. +..+..+++++.+.++ ...... +.+...+...++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~GRr~~----------~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~ 354 (451)
T PF00083_consen 295 LGLVNFLGTLLAIFLIDRFGRRKL----------LIIGLLLMAICSLILGIIFFLGV----------SSSSWWSILSIVF 354 (451)
T ss_pred cccccccccccccccccccccccc----------ccccccccccccccccccccccc----------cccccccccccee
Confidence 222222222223344445555422 4556666665555443 110000 0000012222222
Q ss_pred HHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHH
Q 008020 457 QFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFY 536 (581)
Q Consensus 457 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f 536 (581)
.............+..+.+..|.+|++.|++++|+....+.+++.+++.+.+.+.+. .+ ....|
T Consensus 355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-------------~~---~~~~~ 418 (451)
T PF00083_consen 355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-------------LG---GWGVF 418 (451)
T ss_pred eeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------cc---ccccc
Confidence 222222333345688889999999999999999999999999999988877654311 11 12356
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCCchh
Q 008020 537 GLLAALSFINFGLFLLCASWYKRKKAKQVPE 567 (581)
Q Consensus 537 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 567 (581)
++.++++++..++.+++.+|+|+++++|.++
T Consensus 419 ~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 419 LIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred hhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 7778888888888899999999999988765
No 89
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.80 E-value=1.4e-16 Score=168.55 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc----ccchH-HHHHHHHHHHH
Q 008020 34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF----LGRYR-TIAIFATVQTF 108 (581)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~-~l~~~~~~~~~ 108 (581)
.+..++.+.+.+.-...-+|.|+++ .|++.++.|.+...... .+..+++|+++||+ +|||| .+.++.+..++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 3455666667777777889999985 59999999998666654 68999999999997 26665 67788887777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+..++++... ..+.+.+++..++.++..+...+...+++.|.+|+++ |+++.+
T Consensus 81 ~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~ 133 (402)
T PRK11902 81 SIAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAA 133 (402)
T ss_pred HHHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHH
Confidence 7776665411 1235667777777788888888999999999999998 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDE-VGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~~ 231 (581)
+...+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888775 59999999877665554443
No 90
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.79 E-value=4.2e-16 Score=165.48 Aligned_cols=441 Identities=14% Similarity=0.081 Sum_probs=246.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh----cccchHHHHHH-HH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADS----FLGRYRTIAIF-AT 104 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grr~~l~~~-~~ 104 (581)
.+..+..+.+..++++-...+++++|+ +++|.+....+.+..+..+...+.+|+.|+++|| + ||||.++++ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 456667777778888888888888887 4799999999999999999999999999999995 7 999988875 55
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
..+++.++++++........ . + ..............++..+..++.....+...++++|++|+++++ ++
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~----~-~--~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~ 151 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFG----D-N--LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TR 151 (477)
T ss_pred HHHHHHHHHHhCchhhhhcc----c-c--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HH
Confidence 55556666665522110000 0 0 000000011134455555566677878888899999999988622 46
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHh--hccc-------------chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChh
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYI--QDEV-------------GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPI 249 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l--~~~~-------------g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (581)
.+.++.....++|..+|+.++++. .+.. +.+..|++.+++.++..++..+..++.+..+++.. .
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-~ 230 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-I 230 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-h
Confidence 789999999999999999988865 2111 56888998888777766665554433221110000 0
Q ss_pred HHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHh-HHH
Q 008020 250 VHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEE-VKM 328 (581)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 328 (581)
++ -++++ +. .. ....++.+. +...+ -|.
T Consensus 231 ~~----------------------~~~~~---~~--~~-----------------------~~~~~~~i~-~~~~~mP~~ 259 (477)
T TIGR01301 231 NS----------------------EAAPP---SK--HG-----------------------EEAFFGELF-GAFKYLPRP 259 (477)
T ss_pred hh----------------------hcccc---cc--cc-----------------------hhhhHHHHH-HHHHHCCHH
Confidence 00 00000 00 00 000000000 00000 122
Q ss_pred HHHHHHHHHHHHHHHhhhccccceeeeeccc--cccccccc--ccc-chhhhhhhHHHHHHHHHhhhhhhhhccccccCC
Q 008020 329 VIRLLPIWATTILFWSTYAQMITFSVEQATT--MQRSIGNF--KIP-AASLTVFFVAAILITLGAYDRLIIPLLKKRKGK 403 (581)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~ 403 (581)
+.+++.+-++.-..|..+..+.+-++-+..+ .+..-..| +.. ..+...++.+...+.+.+.. ++.+|...+
T Consensus 260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~----~l~~~~g~~ 335 (477)
T TIGR01301 260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGME----KLCRGWGAG 335 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccc
Confidence 2223333333333333333333322211100 00000001 000 01111222222223333333 333443210
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCceee-ehhhHHHHHHHHHHHHHHhhhHHHhhhccCC
Q 008020 404 PGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGT-TGTTLPIS-VFYLIPQFFLVGSGEGFMYTGQLDFFITQSP 481 (581)
Q Consensus 404 ~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P 481 (581)
++.-.++.++.+++++...+...-..+..++++. +--+.... .+..+..+.+.|+..+..+...++++++..|
T Consensus 336 -----k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 336 -----KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence 1123677778888877766553210000000000 00000111 2456677788999999999999999999999
Q ss_pred cc--hhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 008020 482 KG--MKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK 558 (581)
Q Consensus 482 ~~--~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~ 558 (581)
++ ..|..+|+.|..--+...+.....|.+....++ +....+.+.++..+++.+..++..|+.+
T Consensus 411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 54 559999999999999999988877775544321 1134567777888888888877766543
No 91
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.78 E-value=4.3e-16 Score=163.18 Aligned_cols=381 Identities=14% Similarity=0.113 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008020 34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLL 113 (581)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~ 113 (581)
+...+++..+.+-...++++.|+++ .|++..|.|.+.+...+...++++++|+++||...+||.+.++.++..+...+.
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666677889999985 679999999999999999999999999999998456777777766666554444
Q ss_pred HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHH
Q 008020 114 AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFV 193 (581)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 193 (581)
... .+.+.+++..++..+......|...++..+...+++ .-++-....
T Consensus 86 ~~~------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~--------~~YG~iRlw 133 (400)
T PF03825_consen 86 AFS------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG--------KDYGRIRLW 133 (400)
T ss_pred HHh------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc--------CCCCcchhh
Confidence 433 125566666777777777777888887777666433 223333334
Q ss_pred HHhhHHHHHHH-HHHhhcccc---hhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCC
Q 008020 194 ISTGTLMAVTV-LVYIQDEVG---RSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPS 269 (581)
Q Consensus 194 ~~~g~~i~~~~-~~~l~~~~g---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ 269 (581)
.++|..++... ++.+....+ ....+++.....++.... .+..|+.+.++..++..++
T Consensus 134 GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~~------------------ 194 (400)
T PF03825_consen 134 GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVKK------------------ 194 (400)
T ss_pred hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCccc------------------
Confidence 45555555332 222222222 233455554433322221 2222222110000000000
Q ss_pred CccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhhcc
Q 008020 270 STASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTYAQ 348 (581)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 348 (581)
....|. + ++.+.|+.+..+. .++.+... ..++.
T Consensus 195 --------------------~~~~~~-------------------~------~llk~~~~~~Fll~~~l~~~~~-~~~~~ 228 (400)
T PF03825_consen 195 --------------------LLGLDA-------------------L------KLLKNPRFLVFLLAAFLIGISH-AAYYT 228 (400)
T ss_pred --------------------ccchHH-------------------H------HHhcCccHHHHHHHHHHHHHHH-HHHHH
Confidence 000000 0 0011112222211 12222222 22222
Q ss_pred ccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008020 349 MITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASV 428 (581)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~ 428 (581)
+.+.+..+..... ....+.+.++..+..+..-.+.+++. +| .+..+.+.++.+..++-..+++.
T Consensus 229 f~~~yl~~~gg~~------~~~~g~~~~l~~~aEi~~f~~~~~~~----~r------~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 229 FFSIYLQELGGYS------GSTIGILWALGVVAEIPFFFFSGRFL----KR------FGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHcccch------hhHHHHHHHHHHHHHHHHHHHHHHHH----Hh------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222111000 01122233344444455444444443 43 34555677888888888777765
Q ss_pred HHHHHHHHHhhcCCCCCCceeeehh----hHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHH-HHhHHHHHH
Q 008020 429 VEVKRLAVAKANGTTGTTLPISVFY----LIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLT-TLSLGFFFS 503 (581)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~----li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~-~~~lg~~~g 503 (581)
.. .+++. ..+...++|+.+++..++...|+.+.+|++.|++++|+++. ...+|..+|
T Consensus 293 ~~------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 293 FS------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred hc------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence 52 12111 22224579999999999999999999999999999999885 678999999
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020 504 SLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASW 556 (581)
Q Consensus 504 ~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~ 556 (581)
..+.|.+.+..+.+. ...+..++.+.+++.++..+++++..|+
T Consensus 355 ~~igG~l~~~~g~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 355 SLIGGWLYDAFGARG----------MFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHhcchh----------hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999998775433211 1112345666777777777777776554
No 92
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.77 E-value=4.5e-16 Score=168.07 Aligned_cols=364 Identities=11% Similarity=0.053 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccc-hHHHHHHHHHHHHH
Q 008020 35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD----SFLGR-YRTIAIFATVQTFG 109 (581)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Gr-r~~l~~~~~~~~~~ 109 (581)
-+..+..++.+..+..+++.|+++.+|++..+.|.+..+..+...+..|+.|+++| |+ || |+.++++.+..+++
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVV 90 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHH
Confidence 34556667777778889999999999999999999999999999999999999999 66 88 55566677776766
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFS 188 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~ 188 (581)
..++... |.. ........+++..++..++..+......++..|+.++ ++ |.+..+
T Consensus 91 ~~llf~~---p~~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~~ 146 (473)
T PRK10429 91 LFLLFSA---HLF---------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLVP 146 (473)
T ss_pred HHHHHcC---CCC---------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHHH
Confidence 6555432 210 0111244555666677888888888999999999854 44 899888
Q ss_pred HHHHHHHhhHHHHHHHHHHhhc-------ccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHh
Q 008020 189 RFFFVISTGTLMAVTVLVYIQD-------EVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARK 261 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~-------~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (581)
+.....++|+.+.+.+...+.. ..+|+....+.++..++..+..+...++. .+++..++.
T Consensus 147 ~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~-~~~~~~~~~------------ 213 (473)
T PRK10429 147 YPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV-YSSDNQVSA------------ 213 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec-CCccccccc------------
Confidence 8777777776666555443322 12455444444433333332222211111 000000000
Q ss_pred hcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHH
Q 008020 262 KRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTIL 341 (581)
Q Consensus 262 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 341 (581)
+ ++...+.+. + +.+.+.|.++..+...+....
T Consensus 214 -------~-----------------~~~~~~~~~-------------------~-----~~~~~n~~~~~ll~~~~~~~~ 245 (473)
T PRK10429 214 -------E-----------------GSHLTLKDI-------------------V-----ALIYKNDQLSCLLGMALAYNI 245 (473)
T ss_pred -------c-----------------ccCCCHHHH-------------------H-----HHHhcCHHHHHHHHHHHHHHH
Confidence 0 000000000 0 001011233322222222222
Q ss_pred HHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHH
Q 008020 342 FWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSAL 421 (581)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i 421 (581)
..........++...... + . . ....+..+..+..++..++.+++.+|+.+| +.+..+..+..+
T Consensus 246 ~~~~~~~~~~y~~~y~~~-~-~----~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk----------~~~~~~~~~~~~ 308 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIG-D-A----D-LFPYYLSYAGAANLVTLILFPRLVKSLSRR----------ILWAGASIFPVL 308 (473)
T ss_pred HHHHHhhheeeEEEEECC-C-H----H-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH----------HHHHHHHHHHHH
Confidence 222222222222221111 1 0 1 112233344455666667776665444433 224445554444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-------cchhHHHHHHHHH
Q 008020 422 GMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-------KGMKTMSTGLFLT 494 (581)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~ 494 (581)
+.+.+...... + ..+.+.+++..++.+++.+...+..+++..|..+ ++..|...|.+.+
T Consensus 309 ~~~~~~~~~~~-------------~-~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~ 374 (473)
T PRK10429 309 SCGVLLLMGLA-------------A-PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTM 374 (473)
T ss_pred HHHHHHHHhcc-------------C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence 44333221000 0 1123344555677889999999999999999976 4556778999999
Q ss_pred HHhHHHHHHHHHHHHHHhhhc
Q 008020 495 TLSLGFFFSSLLVSIVKAATG 515 (581)
Q Consensus 495 ~~~lg~~~g~~~~~~i~~~~~ 515 (581)
...++..+++.+.+.+.+..+
T Consensus 375 ~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 375 VVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999998876554
No 93
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.77 E-value=6.2e-18 Score=170.86 Aligned_cols=435 Identities=14% Similarity=0.099 Sum_probs=234.1
Q ss_pred CcchhHHHHHH---HHHHHHHHHHHHHHHHHH----hccc---cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 008020 27 GWVPAALSLGI---EICERLSTMGIAVNLVTY----LGGT---MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRY 96 (581)
Q Consensus 27 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~y----l~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr 96 (581)
.|+.+-.+.++ .+......+.+....+.+ -... =|+++.-.+.+..+..++.++++++.||++||+ |||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK 114 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK 114 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence 45554444443 334444444444443332 2211 236677788899999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCC
Q 008020 97 RTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKD 176 (581)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~ 176 (581)
+++...++++++++++++++...+ .....+..++..|+++|+|.|+-+|+..+..+|..-++.
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~-----------------~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~ 177 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTT-----------------SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT 177 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCC-----------------CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc
Confidence 999999999999999776653311 122457889999999999999999999999999888877
Q ss_pred hHHHhHHhhHHHHHHHHHHhhH----HHHHHHHHHhhcc-----------cchhhHHHHHHHHHHHHHHHHHHccccccc
Q 008020 177 EKEKTQMAYFFSRFFFVISTGT----LMAVTVLVYIQDE-----------VGRSWGYGICSICMFTAILIFLSGTRRYRY 241 (581)
Q Consensus 177 ~~~~~~r~~~~~~~~~~~~~g~----~i~~~~~~~l~~~-----------~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 241 (581)
||...+........|. .++.++.+.+-.. .=||..|.+.++..++.+..-+.+++..++
T Consensus 178 ------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y 251 (538)
T KOG0252|consen 178 ------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARY 251 (538)
T ss_pred ------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhH
Confidence 8888776444444444 4443333332111 128888877665544333322222221111
Q ss_pred cCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcc
Q 008020 242 KKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVT 321 (581)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (581)
+. ...+-...+.. +.+.+.+. -.++++ . ......+ .++.+.++...
T Consensus 252 ~a-------l~~~~~~~a~~--d~~k~~~~--~~~~~~------~--------~~~~~~~---------~~~~~~~F~~~ 297 (538)
T KOG0252|consen 252 TA-------LVSKKLKQAAG--DMKKVLSV--DIEAES------T--------AESDVPP---------PSNSFGLFSRL 297 (538)
T ss_pred HH-------HhhcCHhhhhh--cccccccc--ccchhh------c--------cccCCCC---------cccccchHHHH
Confidence 10 00000111110 11111000 000000 0 0000000 00111001000
Q ss_pred hhH-hHHHHHHHHHHHHHHHHHHhhhcc-ccceeeeeccccccccccccccch---h----hhhhhHHHHHHHHHhhh--
Q 008020 322 RVE-EVKMVIRLLPIWATTILFWSTYAQ-MITFSVEQATTMQRSIGNFKIPAA---S----LTVFFVAAILITLGAYD-- 390 (581)
Q Consensus 322 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~i~~~~l~~-- 390 (581)
... .-++++... ..|..+-. +.+.-..+..-.+ ..++.++ . -.+.....++.++.+-+
T Consensus 298 f~~~hg~~Llgt~-------~~WFllDiafy~~nL~~s~I~~----~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw 366 (538)
T KOG0252|consen 298 FLRWHGKHLLGTA-------GTWFLLDIAFYGQNLFQSVIFS----AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYW 366 (538)
T ss_pred HHHHHHHHHHHHH-------HHHHhhhhhhhccccHHHHHHH----hhccCCCcchHHHHHHHHHHHHHHHHHccCCcee
Confidence 000 012222222 22222111 0011111110000 0011110 0 01112222223332222
Q ss_pred ---hhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHH-HHHHHH
Q 008020 391 ---RLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFL-VGSGEG 466 (581)
Q Consensus 391 ---~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l-~g~~~~ 466 (581)
.+++.++|| ...+.|+.++++.+++++...++ ..+-...++.+.+ .-+++.
T Consensus 367 ~tv~~id~iGRk----------~iq~~GF~~~~i~~~~~~~~y~~---------------~~~~~Gf~v~y~l~~ff~NF 421 (538)
T KOG0252|consen 367 FTVYFIDIIGRK----------YIQLMGFFIMTIFFFVIAGPYNQ---------------LENTIGFVVLYSLTFFFGNF 421 (538)
T ss_pred EEEEEeehhhhH----------HHHHhhHHHHHHHHHHHcCCccc---------------ccccCceeehHHHHHHHHhc
Confidence 223333333 34677888888877777644211 0111122333333 345666
Q ss_pred HHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHH
Q 008020 467 FMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFIN 546 (581)
Q Consensus 467 ~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~ 546 (581)
.-+.+...+.+|.+|.+.||+.-|++-.+.-+|+.++......... +++ |. ..+..+.+++++++++++
T Consensus 422 GPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~-------~~y-p~---~~g~~~v~~i~~~~~~~g 490 (538)
T KOG0252|consen 422 GPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD-------HNY-PP---NIGVRNVFIILAGCMLLG 490 (538)
T ss_pred CCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh-------ccC-Cc---cccchHHHHHHHHHHHHh
Confidence 6667888899999999999999999999999999999988765532 222 11 233467789999999998
Q ss_pred HHHHHhhhccccccccCCchh
Q 008020 547 FGLFLLCASWYKRKKAKQVPE 567 (581)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ 567 (581)
.++.+++. |+|+|++|+.+.
T Consensus 491 i~~T~l~p-Etk~~~leei~~ 510 (538)
T KOG0252|consen 491 ILFTLLIP-ETKGKSLEEISN 510 (538)
T ss_pred HheeEEee-cccccCHHHhcC
Confidence 88877775 999999887754
No 94
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.76 E-value=1e-15 Score=167.57 Aligned_cols=140 Identities=19% Similarity=0.105 Sum_probs=124.5
Q ss_pred cccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccC
Q 008020 58 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQH 137 (581)
Q Consensus 58 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (581)
+..+.+........+++.++..++++++|.++||+ |||++++.++++.+++.++.+++.+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~~------------------- 170 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAPN------------------- 170 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence 45667788888999999999999999999999996 9999999999999999999998833
Q ss_pred CchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhH
Q 008020 138 ASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWG 217 (581)
Q Consensus 138 ~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~ 217 (581)
++.+++.|++.|++.++...+...+++|.++++. |+.+..+ ......++.++|..++++.. +||+.
T Consensus 171 -----~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 171 -----YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred -----HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 8999999999999999999999999999999999 9999999 77777888888888888876 89999
Q ss_pred HHHHHHHHHHHHHH
Q 008020 218 YGICSICMFTAILI 231 (581)
Q Consensus 218 f~i~~~~~~~~~~~ 231 (581)
+++..+..++.++.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 237 FWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 99877766655554
No 95
>PRK09848 glucuronide transporter; Provisional
Probab=99.76 E-value=2e-15 Score=161.98 Aligned_cols=360 Identities=11% Similarity=0.070 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHH-HHHHHHHHHHH
Q 008020 35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYRTI-AIFATVQTFGT 110 (581)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~l-~~~~~~~~~~~ 110 (581)
....+..+..+..+.++++.|+++.+|++..+.|.+.....+...+..++.|+++||. .||||.. .++.+...+..
T Consensus 14 g~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 14 SLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred ccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 3456666777777778888999999999999999999999999999999999999994 2666644 55555454444
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 190 (581)
.++... +. +..........++...+.+++.+...+...++..++.++.++ |.+..++.
T Consensus 94 ~~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r 151 (448)
T PRK09848 94 VLVFWV---PT--------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAAR 151 (448)
T ss_pred HHHHhC---cC--------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHH
Confidence 433211 10 000111234445555677888888888888888877766432 66666554
Q ss_pred HHH-----HHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020 191 FFV-----ISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV 265 (581)
Q Consensus 191 ~~~-----~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (581)
.++ .+++..++|.+.+.........+..+. .++.+++.++.+......+++.+++.+.....+.
T Consensus 152 ~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---------- 220 (448)
T PRK09848 152 GIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKIS---------- 220 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHH----------
Confidence 433 345556666666543211111111111 1112222222221111111100000000000000
Q ss_pred ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020 266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST 345 (581)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 345 (581)
+ +.....|.+.......+.....+..
T Consensus 221 -------------------------------------------------~-----~~l~~n~~f~~~~~~~~~~~~~~~~ 246 (448)
T PRK09848 221 -------------------------------------------------L-----QTLKRNRPLFMLCIGALCVLISTFA 246 (448)
T ss_pred -------------------------------------------------H-----HHHhCCchHHHHHHHHHHHHHHHHH
Confidence 0 0000112222221111111111111
Q ss_pred hccccceeeeeccccccccccccccchhhhhhh-HHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 008020 346 YAQMITFSVEQATTMQRSIGNFKIPAASLTVFF-VAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA 424 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~ 424 (581)
+.....++.....+.+ .. ...+...+ .+..++..++..++.+|..+| +.+.+|.++..++.+
T Consensus 247 ~~~~~~~~~~~~~g~~------~~-~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~----------~~~~~g~~~~~i~~~ 309 (448)
T PRK09848 247 VSASSLFYVRYVLNDT------GL-FTVLVLVQNLVGTVASAPLVPGMVARIGKK----------NTFLIGALLGTCGYL 309 (448)
T ss_pred HhhhheeeEeeecCCh------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHH
Confidence 2212222222111111 11 11111222 334455566666665433322 336677777777665
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcc-------hhHHHHHHHHHHHh
Q 008020 425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKG-------MKTMSTGLFLTTLS 497 (581)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~-------~rg~~~gi~~~~~~ 497 (581)
.+.+.. ..+.+.++...++.++|++...+..++...+..|++ .+|..+|++++.+.
T Consensus 310 ~~~~~~-----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~k 372 (448)
T PRK09848 310 LFFWVS-----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRK 372 (448)
T ss_pred HHHHcC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHH
Confidence 554321 123344555667889999999999999999988754 56999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 008020 498 LGFFFSSLLVSIVKAATG 515 (581)
Q Consensus 498 lg~~~g~~~~~~i~~~~~ 515 (581)
+|..+++.+.+.+....+
T Consensus 373 lg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 373 CGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999998776543
No 96
>PRK09669 putative symporter YagG; Provisional
Probab=99.75 E-value=1.5e-15 Score=162.87 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh----cccchH-HHHHHHHHHHHHH
Q 008020 36 GIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADS----FLGRYR-TIAIFATVQTFGT 110 (581)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grr~-~l~~~~~~~~~~~ 110 (581)
+..+..+..+..+..+++.|+++.+|++..+++.+..+..+...+..|+.|+++|| + |||| .++.+.+...++.
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~ 94 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVC 94 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHH
Confidence 44455666666677889999999999999999999999999999999999999999 5 7754 5556666666665
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 190 (581)
.++... |.. ........+++..++.+.+..+......++.+|+.++.++ |++..++.
T Consensus 95 ~l~f~~---p~~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~~~r 151 (444)
T PRK09669 95 LLTFYT---PDF---------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQSWR 151 (444)
T ss_pred HHHHhC---CCC---------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHHHHH
Confidence 544433 210 0112345566666666777777777788999998865331 88888888
Q ss_pred HHHHHhhHHHHHHHHHHhhc-------ccchhhHHHHHHHHHHHHH
Q 008020 191 FFVISTGTLMAVTVLVYIQD-------EVGRSWGYGICSICMFTAI 229 (581)
Q Consensus 191 ~~~~~~g~~i~~~~~~~l~~-------~~g~~~~f~i~~~~~~~~~ 229 (581)
....++|..+++.+...+.. ..||+..+.+.+++.++..
T Consensus 152 ~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 152 FALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 88888888877765543322 2357766665554444433
No 97
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=158.20 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=106.1
Q ss_pred cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCc
Q 008020 60 MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHAS 139 (581)
Q Consensus 60 l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (581)
.+-+..-.|.+-+.+++..++.++.+|.++||+ |||++++.|.+..++..++.+.+.+
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~~--------------------- 120 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSRN--------------------- 120 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 334556678999999999999999999999999 9999999999999998888888733
Q ss_pred hhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020 140 GIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 140 ~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
...+.++|++.|+.-|-. ....++++|.+++++ |+.+++...++..+|.++||.++|++.+
T Consensus 121 ---F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 121 ---FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ---HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 666777799999998865 667799999999999 9999999999999999999999999987
No 98
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.74 E-value=3.8e-15 Score=160.40 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=120.1
Q ss_pred HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020 51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130 (581)
Q Consensus 51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (581)
....++.+++|-+ ....|+.+...++..+..++.|.++|.+ |||..++.+.++.++|.+.++.+.+
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~------------ 130 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN------------ 130 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc------------
Confidence 4456788888864 6677888999999999999999999998 9999999999999999999988743
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020 131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
...++.+..+.|+|.|... .....++|..|.+. |..+..+.....-....++|.++..+..
T Consensus 131 ------------~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 131 ------------MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred ------------HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 6779999999999977765 44556899999888 8777766665555555567777766666
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 008020 211 EVGRSWGYGICSICMFTAILIF 232 (581)
Q Consensus 211 ~~g~~~~f~i~~~~~~~~~~~~ 232 (581)
+.+|||.|++..+...+++++.
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHHH
Confidence 7799999998887766655443
No 99
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.73 E-value=6.1e-15 Score=158.61 Aligned_cols=379 Identities=13% Similarity=0.106 Sum_probs=213.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG-----RYRTIAIFAT 104 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rr~~l~~~~~ 104 (581)
...++...++...+. +.....++.++++++|++.++.+...+...+...+-.+ +|.++||+ + ||+.+.++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence 344555578888888 77778888999999999999999999999888888666 89999998 7 7777777765
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+.. ...+..++.. + .......+.+++.+++.+...++.-++..|..+ ++++ .++
T Consensus 104 l~~-~~~~~~l~~~-~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~ 157 (468)
T TIGR00788 104 LGS-AILYGLLPGK-V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGP 157 (468)
T ss_pred HHH-HHHHHhcccc-c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCC
Confidence 542 1122222210 1 113334447788899999999999999999998 4411 133
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcc
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRK 264 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (581)
...++.+...++|..+|+.++|++.+..+|+..|++.+++.++..+...+.+++.+...++..+.. .
T Consensus 158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~--~----------- 224 (468)
T TIGR00788 158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL--E----------- 224 (468)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc--h-----------
Confidence 344555556679999999999999998999999988777666554433333322100011000000 0
Q ss_pred cccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHh
Q 008020 265 VELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWS 344 (581)
Q Consensus 265 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 344 (581)
.+. ........... +.. ....+ ....++.+...+.+ ..+.+.
T Consensus 225 ---------~~~-----~~~~~~~~~~~--~~~-------------~~~l~------~~l~~~~i~~~l~f---ifl~~~ 266 (468)
T TIGR00788 225 ---------MNM-----ALLTLGVLANV--KVQ-------------ILGLR------GAIQLLEIAKPLIF---IFLSYA 266 (468)
T ss_pred ---------hhh-----hhhhhhHHHHH--HHH-------------HHHHH------HHHhcHHHHHHHHH---HHHHHh
Confidence 000 00000000000 000 00000 00001122211111 111011
Q ss_pred hhcccc-ceeeeeccccccccccccccc---hhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHH
Q 008020 345 TYAQMI-TFSVEQATTMQRSIGNFKIPA---ASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSA 420 (581)
Q Consensus 345 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~ 420 (581)
...... ..+...... .+.++ +.......++.++...+.+++. +| .+.++.+.++.++.+
T Consensus 267 ~~~~~~~~~f~~~~~~-------lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~----~~------~~~r~~l~~~~~l~~ 329 (468)
T TIGR00788 267 NLPGASGSVFCATTQC-------LPGGPSFSGMSKVVGNLGSLCGVGGYDRFL----KT------FPYRLLFGVTTLLYT 329 (468)
T ss_pred hcCCCCceeEEEEccc-------CCCCcchhhhHHHHHHHHHHHHHHHHHHHH----hh------CCHHHHHHHHHHHHH
Confidence 111111 111111111 12222 2233334444555555554442 32 344455566666665
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHH
Q 008020 421 LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGF 500 (581)
Q Consensus 421 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~ 500 (581)
++......... +.+. ..+ ....+++....++.+++.++...+...++.+.+|++.+|+..|+.+...++|.
T Consensus 330 ~~~~~~~~l~~-~~~~--~~g------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~ 400 (468)
T TIGR00788 330 LSSLFDLILVK-RWNL--AFG------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGS 400 (468)
T ss_pred HHHhCceeeee-cccc--ccC------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHH
Confidence 55433221100 0000 000 01123344455678888888898899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 008020 501 FFSSLLVSIVKAAT 514 (581)
Q Consensus 501 ~~g~~~~~~i~~~~ 514 (581)
.+++.+++.+.+..
T Consensus 401 ~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 401 SVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHHHHHc
Confidence 99998888876543
No 100
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.73 E-value=1.5e-15 Score=168.66 Aligned_cols=203 Identities=14% Similarity=0.142 Sum_probs=153.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
..++.+.+.+....+.+....++.....+.++++++++.++.|++.+.+.++..++.++.|+++||+ ||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 3455544444445555556667777777788899999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhcCCCC----------------CCCCCCCC---------ccccccCCc--hhhHHHHHHHHHHHHHhcc
Q 008020 106 QTFGTGLLAISTKQPQL----------------RPPPCQAT---------DITKCQHAS--GIQMGVLYISLYLIALGTG 158 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~---------~~~~~~~~~--~~~~~~l~~~~~l~glg~g 158 (581)
+.+|.+++++.+.+..- .+..|... +...|...+ ......++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 99999998876421100 01122110 111233222 1235678899999999999
Q ss_pred CcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc----------------------chhh
Q 008020 159 GLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV----------------------GRSW 216 (581)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~----------------------g~~~ 216 (581)
...+...+++.|.+|+++ |+..+++++....+|..+|+++++++.+.+ +|+.
T Consensus 188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl 261 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI 261 (633)
T ss_pred cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence 999999999999999999 999999999999999999999999886532 2777
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 008020 217 GYGICSICMFTAILIFLSG 235 (581)
Q Consensus 217 ~f~i~~~~~~~~~~~~~~~ 235 (581)
.|++.+++.++..+.+++.
T Consensus 262 ~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 262 GFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7877766655544444443
No 101
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.72 E-value=1.9e-15 Score=156.66 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=135.9
Q ss_pred HHHHHHHHHhccccCCChhh-hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 008020 47 GIAVNLVTYLGGTMHLPSAT-SANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPP 125 (581)
Q Consensus 47 ~~~~~l~~yl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (581)
...++..+|+.+++|++.+| .+.+.+++..++.++.+++|+++||+ |.|+++.++.+...+..++..++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~-------- 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT-------- 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34456677999999999999 99999999999999999999999998 999999999999999998888873
Q ss_pred CCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020 126 PCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL 205 (581)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 205 (581)
+...+.+.|++.|++.|... +...++..++|+++ |+++.++.+.+..+|.++++.++
T Consensus 114 ----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~ 170 (511)
T TIGR00806 114 ----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLG 170 (511)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999 99999999999998 99999999999999999999999
Q ss_pred HHhhcccchhhHHH---HHHHHHHHHHHHHHHc
Q 008020 206 VYIQDEVGRSWGYG---ICSICMFTAILIFLSG 235 (581)
Q Consensus 206 ~~l~~~~g~~~~f~---i~~~~~~~~~~~~~~~ 235 (581)
+++ ..+||++-+. ++.....+++++.++.
T Consensus 171 qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 171 QLL-VTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 994 4678887543 5555555565555553
No 102
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.72 E-value=2.1e-14 Score=151.21 Aligned_cols=177 Identities=14% Similarity=0.046 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhH--HHHHHHHHHHHHHHH-HHHhhhcccchHHHHHHHHHH-
Q 008020 31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANI--VTDFMGTSFLLCLLG-GFLADSFLGRYRTIAIFATVQ- 106 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~Grr~~l~~~~~~~- 106 (581)
...+...++.+.+.+....+.+|.|++ +.|.+.++.|.+ ........++.+++. ++.+||+ ||||..++...+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 456677788888888888899999987 559999999997 356677787777777 5579998 9999876554332
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
........... +. ......+.....+.++..+...+...++..|..++++ ++..
T Consensus 81 ~~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~ 134 (390)
T TIGR02718 81 SACLASLALVG--PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKG 134 (390)
T ss_pred HHHHHHHHcCC--cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHH
Confidence 21222222110 10 0112223333444555556666667777777776666 7777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
.+....+..+|..+|+...+++.++.||+..|++.+++.++..+..++.
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7778777889999999888899999999999998887766555544443
No 103
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.72 E-value=4.8e-15 Score=148.71 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG 111 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 111 (581)
++++.+.|+..-......-.+.+.+++.++++..|++.+..+++.+++++.++.|++.+|+ |+|+.++.++.++++|..
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 3334333333333344455667788999999999999999999999999999999999998 999999999999999998
Q ss_pred HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020 112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191 (581)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 191 (581)
++.=++.. .++..++++.++.+.|.|...+.++++++.+.++++ -.+-+++.+
T Consensus 94 lF~pAa~~---------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q 146 (422)
T COG0738 94 LFWPAASS---------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQ 146 (422)
T ss_pred HHhhhhhh---------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHH
Confidence 87533221 348899999999999999999999999999999887 666688888
Q ss_pred HHHHhhHHHHHHHHHHhhc
Q 008020 192 FVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 192 ~~~~~g~~i~~~~~~~l~~ 210 (581)
....+|+.++|++++++..
T Consensus 147 ~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 147 AFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 8899999999999988766
No 104
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.71 E-value=3.1e-15 Score=147.00 Aligned_cols=422 Identities=13% Similarity=0.080 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020 41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120 (581)
Q Consensus 41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 120 (581)
.-.........+.+-+....+.+..|...+.....++..+++..+|.++|++ |||+.+.+..+...+..++-..+ |
T Consensus 89 ad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s---p 164 (528)
T KOG0253|consen 89 ADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS---P 164 (528)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---C
Confidence 3344445555666667778888999999999999999999999999999998 99999998888777766666655 3
Q ss_pred CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM 200 (581)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 200 (581)
+ +..+++.|.+.++|.|+ .|...++-.|..|... |..-+-+. ....+|..+
T Consensus 165 n---------------------f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ 215 (528)
T KOG0253|consen 165 N---------------------FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVF 215 (528)
T ss_pred C---------------------eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHH
Confidence 3 77899999999999999 8888899999999887 77766555 667889988
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCcc
Q 008020 201 AVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPE 280 (581)
Q Consensus 201 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~ 280 (581)
.-.+.-....++||||..........+.....++..+..+..--++++.+. ...+....+.-+.++|......+..++-
T Consensus 216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kA-letL~kiArmNg~qlplgvl~~s~~~~~ 294 (528)
T KOG0253|consen 216 EALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKA-LETLHKIARMNGKQLPLGVLESSAIDRQ 294 (528)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHH-HHHHHHHHHhcCCCCCcceeeeehhhhh
Confidence 888887778888999976655544444444444433333333334444332 2233333343445555433222211110
Q ss_pred ccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhcccccee-------
Q 008020 281 ESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFS------- 353 (581)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------- 353 (581)
+ +|.. .+|+......++ .+....... .-.-+|+.+..+.+|+.....|.......+-+
T Consensus 295 e-----~e~~-~~~~~~~~a~ke-------~rg~~~nLl--sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c 359 (528)
T KOG0253|consen 295 E-----QEES-DLDDSKSSAAKE-------VRGGTTNLL--SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDAC 359 (528)
T ss_pred h-----hhhh-chhhhhhccccc-------cccchHhhc--ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcc
Confidence 0 0001 111111000000 111110000 11223445445555544443322211111100
Q ss_pred ----eeeccccccccc-cccccch----hhhhhhH-HHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHH
Q 008020 354 ----VEQATTMQRSIG-NFKIPAA----SLTVFFV-AAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGM 423 (581)
Q Consensus 354 ----~~~~~~~~~~~~-~~~~~~~----~~~~~~~-~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~ 423 (581)
...+...+.... .+..... ++.+..- =+.++.+ .++++++||.. |...+++.++..
T Consensus 360 ~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~----~iverlGRKkT----------Mal~l~~f~ifl 425 (528)
T KOG0253|consen 360 PLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITG----VIVERLGRKKT----------MALSLILFGIFL 425 (528)
T ss_pred ccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHH----HHHHHhcchhH----------HHHHHHHHHHHH
Confidence 000000110000 0000011 1111111 1122333 34445556533 666777776665
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHH
Q 008020 424 ASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFS 503 (581)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g 503 (581)
+.+..... .....+. .+..-++....+...+.|..|.+|+..|+++.|....++.+|+++.
T Consensus 426 fll~~c~~------------------rn~~tvl-lf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~ 486 (528)
T KOG0253|consen 426 FLLTTCKT------------------RNAYTVL-LFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFS 486 (528)
T ss_pred HHHHHhcC------------------cchhHHH-HHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhh
Confidence 55443321 1111111 2223344455568889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 008020 504 SLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKA 562 (581)
Q Consensus 504 ~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 562 (581)
|.+. +..+.+ . ...-.+.+++.+++.+..+++-.++|+|..
T Consensus 487 p~iA-~~~e~s---------------~--sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 487 PVIA-MRAELS---------------T--SLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hHHH-HHhccc---------------e--eehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 9988 332111 0 111246677788888888888778887753
No 105
>PTZ00207 hypothetical protein; Provisional
Probab=99.71 E-value=8.6e-14 Score=150.92 Aligned_cols=171 Identities=15% Similarity=0.083 Sum_probs=124.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
++|..+.+...+..+... .|++. .....+++++|++..+.+++.+.... ..++.+++|+++||+ |||+++.++.++
T Consensus 25 ~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll 100 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTV 100 (591)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 334333333333333332 33333 34456788999999999998876443 345677889999998 999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.++++++... . -..+.+.+++.|++.|+|.+...+.....+.+++| ++ ||+
T Consensus 101 ~~iG~ll~ala~~~-~-----------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~ 155 (591)
T PTZ00207 101 FCLGTLLFALTFQE-V-----------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGA 155 (591)
T ss_pred HHHHHHHHHHHhcc-c-----------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHH
Confidence 99999998886220 0 01247889999999999999888888888999997 55 999
Q ss_pred HHHHHHHHHHhhHHH-HHHHHHHhhcccchhhHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLM-AVTVLVYIQDEVGRSWGYGICSICMFT 227 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i-~~~~~~~l~~~~g~~~~f~i~~~~~~~ 227 (581)
+.++.....++|+.+ +++..+++.+ +|+..|++.++..++
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALV 196 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHH
Confidence 999999999999964 6666666653 567766655544333
No 106
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.71 E-value=2.4e-15 Score=155.12 Aligned_cols=393 Identities=10% Similarity=0.021 Sum_probs=220.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+..|......++..+++-...++.+.++++..|++.++.|.+.++..+...+.+|+.|.++||. |.||-++....+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4677777888888888878889999999998999999999999999999999999999999998 876655544332222
Q ss_pred --HHHHH-HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 109 --GTGLL-AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 109 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
+-... .+. |. -..-++++.++.++..+.......+.. |.+-++. +++.+-
T Consensus 86 l~~pff~~v~~---pl--------------------l~~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~---sr~~~f 138 (412)
T PF01306_consen 86 LFGPFFIYVFG---PL--------------------LQSNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERV---SRRNGF 138 (412)
T ss_dssp TCHHHHHHTHH---HH--------------------HHTT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHH---HHHHSS
T ss_pred HHHHHHHHHHH---HH--------------------HHHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHH---HHHhcC
Confidence 22221 111 00 001123333333444444333333322 3332221 111233
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV 265 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (581)
-+|-.....++|..++..++|++.+ .+-+..|+++....++..++.+..++..+++.+..+..
T Consensus 139 eYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~---------------- 201 (412)
T PF01306_consen 139 EYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL---------------- 201 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS----------------
T ss_pred CcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc----------------
Confidence 3444556788999999999998876 45567888776655544444444332211110000000
Q ss_pred ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020 266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST 345 (581)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 345 (581)
+. ++.+.+.....++.+.|+++.+..+.......|..
T Consensus 202 ---------------------~~----------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~v 238 (412)
T PF01306_consen 202 ---------------------GA----------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDV 238 (412)
T ss_dssp ---------------------SS----------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------cc----------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 00 00000000000111223444443333333333333
Q ss_pred h-ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 008020 346 Y-AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA 424 (581)
Q Consensus 346 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~ 424 (581)
+ +|++.++.......+.. ....+.+.++..+..++...+..+++.|.+.| ..+.++..++++-..
T Consensus 239 fdqqf~~y~~~~f~~~~~g----~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k----------~~Lllag~i~~iRi~ 304 (412)
T PF01306_consen 239 FDQQFPIYFASFFQSAGQG----NQMYGYLWSVQVFLEALMMFFSPWLINRIGAK----------NLLLLAGVIMAIRII 304 (412)
T ss_dssp HHHHHHHHHHHTSSSHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccC----hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH----------hHHHHHHHHHHHHHH
Confidence 3 33332222111000000 00122333444444445444555555444433 447777777888877
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHH-HHHHhHHHHHH
Q 008020 425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLF-LTTLSLGFFFS 503 (581)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~~g 503 (581)
..++. .+++++++.-.++++-..+......-|+.+.+|++..++...+. ++..++|..+.
T Consensus 305 ~~~~~-------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 305 GSGFA-------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp HHHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred HHhhh-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77655 34566777778999999999999999999999999999998885 58899999999
Q ss_pred HHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 008020 504 SLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK 558 (581)
Q Consensus 504 ~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~ 558 (581)
+.+.|.+.+. .+.+..|++.+++.+...++..+..++.+
T Consensus 366 s~~~G~lyd~----------------~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 366 SPLAGYLYDR----------------IGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred hhhHHhhHhh----------------cCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999887642 23355688888887777777776655433
No 107
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.1e-16 Score=156.07 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=135.2
Q ss_pred cccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccC
Q 008020 58 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQH 137 (581)
Q Consensus 58 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (581)
+.++-.+++.|++.+...+...+..++.|.+.||+ |+|-.+++|+.++..+++++++..
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 34566788999999999999999999999999998 999999999999999999999883
Q ss_pred CchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhH
Q 008020 138 ASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWG 217 (581)
Q Consensus 138 ~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~ 217 (581)
+++.++++|.++|+|.++..++..++++|.+|+++. |++++|..-....+|-.+||.++|.+-+..|.+.+
T Consensus 158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP 228 (464)
T KOG3764|consen 158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP 228 (464)
T ss_pred ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence 388999999999999999999999999999998863 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcc
Q 008020 218 YGICSICMFTAILIFLSGT 236 (581)
Q Consensus 218 f~i~~~~~~~~~~~~~~~~ 236 (581)
|++.++..++...+.++..
T Consensus 229 FlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 9998888777666655543
No 108
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.68 E-value=8.8e-15 Score=156.08 Aligned_cols=358 Identities=16% Similarity=0.140 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccchHHH-HHHHHHHHHHHHH
Q 008020 38 EICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD----SFLGRYRTI-AIFATVQTFGTGL 112 (581)
Q Consensus 38 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grr~~l-~~~~~~~~~~~~~ 112 (581)
.+..+........+++.|+++.+|+++...+.+..+..+..++..|+.|+++| |+ ||||.. +++....+++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 34555555566678889999999999999999999999999999999999999 77 876654 5677777777766
Q ss_pred HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020 113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192 (581)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (581)
+.... |. ..........+.+..++..++.........++..|+.+++++ |.+..++...
T Consensus 89 lf~~~--p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~ 147 (428)
T PF13347_consen 89 LFSPP--PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMI 147 (428)
T ss_pred hhccc--cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHH
Confidence 65430 10 000011234457777777999999999999999999986542 8999999888
Q ss_pred HHHhhHHHHHHHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020 193 VISTGTLMAVTVLVYIQDEV-------GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV 265 (581)
Q Consensus 193 ~~~~g~~i~~~~~~~l~~~~-------g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (581)
...+|.++...+.+.+.+.. +|++...+.+++.++..++..+..++.+.+.+++++.
T Consensus 148 ~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~---------------- 211 (428)
T PF13347_consen 148 FSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK---------------- 211 (428)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc----------------
Confidence 88888876666665554322 5777766665555554444444333200000000000
Q ss_pred ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020 266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST 345 (581)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 345 (581)
..+ +..++ .-.++ |.+.......+.....+..
T Consensus 212 ------------------------~~~-------------------~~~~~----~~~~n-r~~~~l~~~~~~~~~~~~~ 243 (428)
T PF13347_consen 212 ------------------------ISL-------------------RDSLR----SLFRN-RPFRILLLAFFLQWLAFAL 243 (428)
T ss_pred ------------------------ccc-------------------ccchh----hhccc-chHHHHHHHHHHHHhhhhh
Confidence 000 00000 00011 1222222221111111111
Q ss_pred hccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 008020 346 YAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMAS 425 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~ 425 (581)
......++.......+ . ..+.+.....+..++..++..++.+|+.+|+. +..+.++.+++.++
T Consensus 244 ~~~~~~y~~~~vl~~~------~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~----------~~~~~~~~~~~~~~ 306 (428)
T PF13347_consen 244 MNTFLPYYFTYVLGNE------G-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKV----------YIIGLLLAALGFLL 306 (428)
T ss_pred hhhHHHHHHHHHhcCc------h-hhHHHHHHHHHHHHHHHHHHHHHHHHccceee----------hhhhHHHHHHHHHH
Confidence 1111111111100100 1 12233445566667777888777766655532 66777777777776
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-------cchhHHHHHHHHHHHhH
Q 008020 426 ASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-------KGMKTMSTGLFLTTLSL 498 (581)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~l 498 (581)
..+... .+.+++.+..++.|++.+..++..+++..|..+ ++..|...|++++...+
T Consensus 307 ~~~~~~-----------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 307 LFFLGP-----------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred HHHHHh-----------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 665521 245667778889999999999999999998887 35579999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 008020 499 GFFFSSLLVSIVKAATG 515 (581)
Q Consensus 499 g~~~g~~~~~~i~~~~~ 515 (581)
+..+++.+.+.+....+
T Consensus 370 ~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 370 GQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999998776554
No 109
>PRK11462 putative transporter; Provisional
Probab=99.65 E-value=2.8e-13 Score=145.63 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHH-HHHHHHHHHHH
Q 008020 35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYRTI-AIFATVQTFGT 110 (581)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~l-~~~~~~~~~~~ 110 (581)
-+..+..+..+..+..++..|.++.+|+++..+|.+..+.-+.-.+..|+.|+++||. +||||.. +++.+...++.
T Consensus 15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence 3455566666667778899999999999999999999999999999999999999972 3887654 45667777766
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 190 (581)
+++... |.. ........+.+.-++..++..+......++.+|+.++.++ |.+..++.
T Consensus 95 ~llf~~---p~~---------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r 151 (460)
T PRK11462 95 VLAYST---PDL---------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWR 151 (460)
T ss_pred HHHHhC---CCC---------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHH
Confidence 665433 210 0112244456666667888888888999999999986542 99999999
Q ss_pred HHHHHhhHHHHHHHHHHhh
Q 008020 191 FFVISTGTLMAVTVLVYIQ 209 (581)
Q Consensus 191 ~~~~~~g~~i~~~~~~~l~ 209 (581)
....++|..+++.+...+.
T Consensus 152 ~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 152 FVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9888998888877765443
No 110
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.1e-14 Score=154.32 Aligned_cols=420 Identities=15% Similarity=0.057 Sum_probs=246.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 31 AALSLGIEICERLSTMGIAVN---LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
-|++.+..|..+...+++..- +-..++++++-+..+.+|+.++......+..|+.+.+.||+ |.|.+.+.+.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence 477777777777777766533 34566789999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHH-HHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYI-SLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
+|.++.+++.+ .+.+++ .-++.|+|.|+.+......+..+|+ ++ |+.+
T Consensus 123 ~g~~lssF~~~------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kk------R~lA 171 (509)
T KOG2504|consen 123 LGLLLSSFATS------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KK------RALA 171 (509)
T ss_pred HHHHHHHHHhh------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HH------HHHH
Confidence 99999999843 544444 4456899999988888888886665 44 8999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccc
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVE 266 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (581)
.++-..+..+|.++=|.+.-++.+.+|||..+++-..+.+-........+|...+..+.+. .+. ++....
T Consensus 172 ~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~--~~~--------~~~~~~ 241 (509)
T KOG2504|consen 172 TGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE--KDL--------RNSAAS 241 (509)
T ss_pred HhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh--hhh--------cccccc
Confidence 9998888889998888888899999999999987776665555555554443222211100 000 000000
Q ss_pred cCCCccccccCCccccccccC-----cccchhccccccccCCCCCCCCccCCCCcc-cC--cchhHhHHHHHH-HHHHHH
Q 008020 267 LPSSTASLYEDYPEESRIQHT-----YQFRCLDKASVVTNTDYSEDGAFVSNPWTL-CP--VTRVEEVKMVIR-LLPIWA 337 (581)
Q Consensus 267 ~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~-~~~~~~ 337 (581)
. +....-.+....++..... +.....+. .++. +..+-+. .. +.++...+.++. .....+
T Consensus 242 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~ 309 (509)
T KOG2504|consen 242 V-ESTPKPVELRISERDSGLKKLSLSNLATLKRG----PDKW-------RNSPLQAFLSMLDLSLLKDPKFLLLALSNLF 309 (509)
T ss_pred c-cccccccccccccCCCCCCcccccchhhhhhC----Cccc-------cccchhhhhhhhhHHHHcCchHHHHHHHHHH
Confidence 0 0000000000000000000 00000000 0000 0000000 00 011111122221 111222
Q ss_pred HHHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHH
Q 008020 338 TTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLF 417 (581)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~ 417 (581)
....+...+...+.... ....+ ......+.++..+..++.-++.+.+.++-. .+......++++
T Consensus 310 ~~~g~~~p~~~l~~~~~--~~g~~------~~~aa~l~Siigi~~i~gRi~~G~laD~~~--------~~~~~~~~~~ll 373 (509)
T KOG2504|consen 310 AYLGFNVPFVYLPSYAK--SLGLS------SNDAAFLLSIIGVSDIIGRIILGLLADKPG--------IRALVLFLLTLL 373 (509)
T ss_pred HHHHHHHHHHHHHHHHh--hcCCC------hhhhHHHHHHHHHhhhhhhhhhhhhcCccc--------cchHHHHHHHHH
Confidence 22222222222221111 11111 112233444445555555555555544322 122333455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHh
Q 008020 418 LSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLS 497 (581)
Q Consensus 418 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ 497 (581)
+.+++.++..+. .+++.++...++.|+..+...........+..+.+.-+.+.|+..+.+.
T Consensus 374 ~~gl~~~~~p~~-------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~g 434 (509)
T KOG2504|consen 374 IAGLARLFLPFA-------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQG 434 (509)
T ss_pred HHHHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhH
Confidence 666665444443 2445667777888998888888887899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 008020 498 LGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCA 554 (581)
Q Consensus 498 lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~ 554 (581)
++..+|+.+.+.+.+.++ .+...|+..++..+++.++.++..
T Consensus 435 i~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 435 IGALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999876544331 123345565666666655554443
No 111
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.3e-13 Score=134.68 Aligned_cols=336 Identities=16% Similarity=0.213 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020 41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120 (581)
Q Consensus 41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 120 (581)
-+-.+-++ ..+..-+++++|++.++++.+.+...++..+..++..+++.|+ |.++.+..++++.++|.++=...
T Consensus 24 LR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~---- 97 (395)
T COG2807 24 LRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG---- 97 (395)
T ss_pred cchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc----
Confidence 34444433 3445667889999999999999999999999999999999998 99999999999999999876543
Q ss_pred CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM 200 (581)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 200 (581)
+...++.+-.+.|.|.+......++.+.+.||++ .+..++.|....++|+.+
T Consensus 98 ---------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaL 149 (395)
T COG2807 98 ---------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAAL 149 (395)
T ss_pred ---------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHH
Confidence 2667889999999999999999999999999866 588899999999999999
Q ss_pred HHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCc
Q 008020 201 AVTVLVYIQDEV-GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYP 279 (581)
Q Consensus 201 ~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~ 279 (581)
++.+...+.++. ||+....+=++..++++++.+....|.+ .++.+...
T Consensus 150 aa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~~~----------------------------- 198 (395)
T COG2807 150 AAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AASIATKL----------------------------- 198 (395)
T ss_pred HhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--cccccccc-----------------------------
Confidence 999988887776 7999877666666666665544322111 00000000
Q ss_pred cccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccc
Q 008020 280 EESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATT 359 (581)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (581)
.+ ....| ++ .......+.+-+....+|..+.+++.++.++...
T Consensus 199 ---------------------~~--------~~~vw---~~-----~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~s 241 (395)
T COG2807 199 ---------------------VS--------VRKVW---RS-----PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLS 241 (395)
T ss_pred ---------------------cc--------ccccc---cC-----chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence 00 11122 11 1122223334566677778877777766554322
Q ss_pred cccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008020 360 MQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKA 439 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~ 439 (581)
.. ..+.+.++..+..+..+.+...+.. |..+ .+........++.++++.+.+...
T Consensus 242 a~--------~aG~llsl~~l~~~~~~ll~P~la~----R~~n-----~r~~~~~~~~~~l~G~~G~~~~P~-------- 296 (395)
T COG2807 242 AA--------EAGSLLSLMQLAQLPTALLIPLLAR----RSKN-----QRPLVVLALLLMLVGLVGLLLAPG-------- 296 (395)
T ss_pred HH--------HhhhHHHHHHHHHHHHHHHHHHHHH----Hhcc-----cchHHHHHHHHHHHHHHHHHHhhh--------
Confidence 11 2233333334444444444444443 2211 112234445555555554444321
Q ss_pred cCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-cchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 008020 440 NGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-KGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATG 515 (581)
Q Consensus 440 ~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~ 515 (581)
...++| .+++|+|.+..+|....++...++ ++..+..+|+.+....+-..+||.++|.+-+.++
T Consensus 297 --------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 297 --------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred --------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 112222 367899999999888887776665 5677788888888888889999999999877664
No 112
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.4e-13 Score=146.66 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=123.3
Q ss_pred hccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 008020 56 LGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKC 135 (581)
Q Consensus 56 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (581)
+.+++++...+.+.+.++++++++++.+++|.|.||+ .-.+.+..+.+...+-.++....+
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------ 132 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------ 132 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 4578889999999999999999999999999999998 866666555554444443333342
Q ss_pred cCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh------h
Q 008020 136 QHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI------Q 209 (581)
Q Consensus 136 ~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l------~ 209 (581)
+.+.+++.|++.|+.+++..|+...+++.++.+++ |+.-+++++...++|.++|.+++..+ .
T Consensus 133 ------s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~ 200 (495)
T KOG2533|consen 133 ------SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG 200 (495)
T ss_pred ------hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence 37789999999999999999999999999999999 99999999999999999999998775 3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHccc
Q 008020 210 DEVGRSWGYGICSICMFTAILIFLSGTR 237 (581)
Q Consensus 210 ~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 237 (581)
...||||.|.+.+++.++..++.++..|
T Consensus 201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 201 GLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred CcCCceeehhHHHHHHHHHHheEEEEec
Confidence 3568999999998776665544444333
No 113
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.9e-11 Score=127.69 Aligned_cols=363 Identities=15% Similarity=0.120 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYR-TIAIFATVQT 107 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~-~l~~~~~~~~ 107 (581)
..--...+..++.+-.+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.+.||. .||+| -++++.+..+
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~ 94 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA 94 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence 4444556677777778888999999999999999999999999999999999999999983 26654 5566767778
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
+...++..+... ....+....++--.+.+++.........++.+++.++.+ +|.+..
T Consensus 95 i~~~l~F~~p~~------------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~ 151 (467)
T COG2211 95 IVAVLLFITPDF------------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLT 151 (467)
T ss_pred HHHHHHHcCCCc------------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHH
Confidence 777777665210 011335556677778889999999999999999998755 299999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcc-------cchhhHHHHHHHHHHHHHHHHHH-ccccccccCCCCC-hhHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDE-------VGRSWGYGICSICMFTAILIFLS-GTRRYRYKKCSGS-PIVHICQVVVA 258 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~-------~g~~~~f~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~ 258 (581)
++-....++|.++...+.+.+... .||+..-.+.+++..+.++..++ .++|..+..+.++ ...+....+
T Consensus 152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~-- 229 (467)
T COG2211 152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSF-- 229 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHH--
Confidence 999999999987776666555432 34444333333332222222222 1222111110000 000000000
Q ss_pred HHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHH
Q 008020 259 ARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWAT 338 (581)
Q Consensus 259 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 338 (581)
....+.|.++..+...++
T Consensus 230 --------------------------------------------------------------~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 230 --------------------------------------------------------------LLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred --------------------------------------------------------------HHHHccchHHHHHHHHHH
Confidence 000111222222222222
Q ss_pred HHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHH
Q 008020 339 TILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFL 418 (581)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l 418 (581)
..+..........++.... .+.. ...+...........++..++..++..++++| +...++.++
T Consensus 248 ~~~~~~i~~s~~~yy~~y~--lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk----------~~~~~~~~~ 311 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYV--LGDP----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK----------KLFLIGLLL 311 (467)
T ss_pred HHHHHHHHhhhhheeEEEE--cCCh----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH----------HHHHHHHHH
Confidence 2222222221112222221 1111 22222222333333444455555554333333 346777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-------cchhHHHHHH
Q 008020 419 SALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-------KGMKTMSTGL 491 (581)
Q Consensus 419 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi 491 (581)
..++.+.+.+.. ..+...+++..++.+++.+...+..|+++.|... .+.-|...+.
T Consensus 312 ~~i~~~~~~f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~ 374 (467)
T COG2211 312 LAVGYLLLYFTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG 374 (467)
T ss_pred HHHHHHHHHhhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence 777776666552 1234455556678889999999999999988754 4567888899
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhh
Q 008020 492 FLTTLSLGFFFSSLLVSIVKAAT 514 (581)
Q Consensus 492 ~~~~~~lg~~~g~~~~~~i~~~~ 514 (581)
..+.+-+|..++..+.+.+....
T Consensus 375 ~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 375 MTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999877554
No 114
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.55 E-value=2e-11 Score=130.65 Aligned_cols=86 Identities=22% Similarity=0.254 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchh
Q 008020 453 YLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRL 532 (581)
Q Consensus 453 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~ 532 (581)
.+.+.-++.|+..+...+..-++..|..|++..+...|++.+....++++||.+.+.+...+++ .
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~---------------~ 446 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS---------------Q 446 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------c
Confidence 3444556789999999999999999999999999999999999999999999999998876642 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 008020 533 DCFYGLLAALSFINFGLFLLC 553 (581)
Q Consensus 533 ~~~f~~~~~~~~i~~~~~~~~ 553 (581)
..-++...++.++++++++..
T Consensus 447 r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 447 RYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred hhHHHHHHHHHHHHHHHHhhc
Confidence 233455556666666666544
No 115
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.50 E-value=6.8e-13 Score=144.07 Aligned_cols=180 Identities=11% Similarity=0.139 Sum_probs=130.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+++.........++....+|++..++|.|+++.+|++..+.........++..++.+++|+++||+ |||+++..+.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 445444444555667788999999999999888999988888888888889999999999999998 9999988877654
Q ss_pred HHHHHH-HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 107 TFGTGL-LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 107 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
.++.+. +..... + +...+++++++.+++.+...+....+..+.+|++. |++
T Consensus 327 ~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~ 378 (490)
T PRK10642 327 FVLAIPAFILINS-N---------------------VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYS 378 (490)
T ss_pred HHHHHHHHHHHhC-C---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chH
Confidence 443332 222211 1 24556778888887777666777788889999999 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHc
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
++++.+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++.
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9997444456667889999998877544 6666554444444444444443
No 116
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.48 E-value=1.5e-10 Score=117.68 Aligned_cols=348 Identities=14% Similarity=0.162 Sum_probs=199.2
Q ss_pred ccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----chHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020 57 GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG-----RYRTI-AIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130 (581)
Q Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (581)
..+++++..-.+.+++..++.+. ..+..|+.||+. + ||.-+ ..+..+.+.+..+.+++.-.-. .
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--------~ 76 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--------E 76 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--------c
Confidence 45788888888888887777766 577889999997 6 66444 4556666666655544421110 0
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020 131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
.....+.+.........++-.+.|+|.+...++..++++|..|+++ |+++.++.+...-+|..++..+.+.+.+
T Consensus 77 ~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 77 SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000111222334455566667899999999999999999999999 9999999999999999999999988776
Q ss_pred ccchhhH----HHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCcccccccc
Q 008020 211 EVGRSWG----YGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQH 286 (581)
Q Consensus 211 ~~g~~~~----f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 286 (581)
.+...-. -..+.+...+.++..+-.+++.++..+..++
T Consensus 151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~-------------------------------------- 192 (403)
T PF03209_consen 151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAER-------------------------------------- 192 (403)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCC--------------------------------------
Confidence 6552221 1122222333333333322222211100000
Q ss_pred CcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeecccccccccc
Q 008020 287 TYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGN 366 (581)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (581)
++..+.+. |+.+..+ .+.++++..+ +.....+.+.-....+ +..+..+
T Consensus 193 -~~~~f~~a-------------------~~~~~~~--~~a~~f~~fl--~l~t~a~~~QD~iLEP--------ygg~Vfg 240 (403)
T PF03209_consen 193 -PRPPFREA-------------------WRQVWAS--PQARRFFVFL--FLGTLAFFMQDVILEP--------YGGEVFG 240 (403)
T ss_pred -CCccHHHH-------------------HHHHHhC--CChhHHHHHH--HHHHHHHHhhHHHcCC--------chhHHcC
Confidence 00000000 0000000 0112222221 1122222121111111 1111111
Q ss_pred cccc-chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020 367 FKIP-AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGT 445 (581)
Q Consensus 367 ~~~~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 445 (581)
.++. ...++.....+.++...+.+++.. +|. ++.+...+|..+..+++..+.....
T Consensus 241 msv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~~------~~~~~a~~G~~~~~~~f~lii~a~~-------------- 297 (403)
T PF03209_consen 241 MSVGETTRLTAFWGGGTLLGMLLAGFLLS---RRL------GKKRTAALGCLLGALAFALIILAGP-------------- 297 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC------CchHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 1221 233455555565665555555543 221 2223345566666666655443321
Q ss_pred CceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 008020 446 TLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATG 515 (581)
Q Consensus 446 ~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~ 515 (581)
.-+.+.+....++.|++.+.......+...+..+++..|..+|.+..++.++..++..+.+.+.+...
T Consensus 298 --~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 298 --LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred --cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12446677788999999999999999999999999999999999999999999999999888776553
No 117
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.46 E-value=2.8e-12 Score=135.28 Aligned_cols=177 Identities=12% Similarity=0.070 Sum_probs=132.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+++..+..+...+.....++.+..++|.|+++++|++..+.+.+.+...+...++.+++|+++||+ |||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 344444444444444455555667899999999999999999888888888888999999999998 9999887776554
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.+......... +.+.+.+.+++.+++.|...+....+..|.+|+ + |+++
T Consensus 293 ~~~~~~~~~~~------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~ 341 (393)
T PRK15011 293 VCFYAGMLMAH------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSA 341 (393)
T ss_pred HHHHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchH
Confidence 44433333221 255566777777777666666667777888874 5 7889
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
.++++...++|..++|.++|++.+..||+..|++..++.+++++..+..
T Consensus 342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9998888899999999999999998899999988877777766655543
No 118
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.43 E-value=3.1e-12 Score=138.11 Aligned_cols=177 Identities=15% Similarity=0.033 Sum_probs=134.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+.+|.+.+..++....+++...++|.|+++.+|++..+++.......++..++.+++|+++||+ |||+.+........+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 4678888888888888889999999999999999999999999999999999999999999998 999877665444433
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+..+..+... .+....++.+++.|+..............|.+|++. |+++.+
T Consensus 337 ~~~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~g 388 (467)
T PRK09556 337 IFTLGVYQHA----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANG 388 (467)
T ss_pred HHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHH
Confidence 3322222210 114445566666665433333333356679999988 999999
Q ss_pred HHHHHHHh-hHHHHHHHHHHhhc------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008020 189 RFFFVIST-GTLMAVTVLVYIQD------------EVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 189 ~~~~~~~~-g~~i~~~~~~~l~~------------~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+.+...++ |..++|.+.|++.+ ..||+..|++..++.+++.+....
T Consensus 389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99998886 77999999999998 578999998777766666555443
No 119
>PRK09952 shikimate transporter; Provisional
Probab=99.43 E-value=4.6e-12 Score=135.58 Aligned_cols=183 Identities=14% Similarity=0.038 Sum_probs=132.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
++++.........++..+.+|....+++.|+++.+|++......+.........++.+++|+++||+ |||+++..+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 4445444445567778888999999999999999999887666666666777788889999999998 999998888766
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+.+....... .....+.+..++.+++.+...+..++++.|.+|.+. |++
T Consensus 326 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t 379 (438)
T PRK09952 326 GTLSAFPFFMALEAQ--------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS 379 (438)
T ss_pred HHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence 555444333221101 113334455566678878778888999999999988 998
Q ss_pred HHHH-HHHHHHhhHHHHHHHHHHhhccc--chhhHHHHHHHHHHHHHHHHHHc
Q 008020 186 FFSR-FFFVISTGTLMAVTVLVYIQDEV--GRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 186 ~~~~-~~~~~~~g~~i~~~~~~~l~~~~--g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
+.++ ++....+|+.++|.+.+++.+.. +|..++.+..++.+++.+..+..
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 8888 44445689999999999997744 47777776666666655554443
No 120
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.7e-13 Score=128.85 Aligned_cols=137 Identities=17% Similarity=0.281 Sum_probs=113.1
Q ss_pred HHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008020 50 VNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQA 129 (581)
Q Consensus 50 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (581)
.-+..+.+.+.+.+.++...+.+.++....+.+.++|++.||.+|-|..-++-.....+|-++++...-
T Consensus 64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi----------- 132 (459)
T KOG4686|consen 64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI----------- 132 (459)
T ss_pred hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----------
Confidence 336678888889998999999999999999999999999999989888766666666777776654311
Q ss_pred CccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhh
Q 008020 130 TDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQ 209 (581)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~ 209 (581)
....|....+|++.|+|.-....+.+.+...++..++ ...+++++.....+|+.+-..+.+++.
T Consensus 133 ----------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 133 ----------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred ----------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHH
Confidence 1237889999999999988888899999999999999 999999998888899887777777776
Q ss_pred cccc
Q 008020 210 DEVG 213 (581)
Q Consensus 210 ~~~g 213 (581)
+..+
T Consensus 197 ~~~~ 200 (459)
T KOG4686|consen 197 DTMG 200 (459)
T ss_pred HHHH
Confidence 6543
No 121
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.41 E-value=3.6e-12 Score=132.64 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=136.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
..+......++..........+.+.|. +++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 283 (377)
T TIGR00890 206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG 283 (377)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence 455555555666666555666677775 46889988999999999999999999999999998 9999999988888887
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.++...... .....+++..++.+++.+...+..++++.|.+|+++ |++++++
T Consensus 284 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~ 335 (377)
T TIGR00890 284 MAAMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGF 335 (377)
T ss_pred HHHHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHH
Confidence 776655421 012334455677788888888888889999999988 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAI 229 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 229 (581)
.+...++|..++|.+.|++.++.||+..|.+.+++.++++
T Consensus 336 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 336 LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988776655543
No 122
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.39 E-value=2.4e-11 Score=123.74 Aligned_cols=386 Identities=11% Similarity=-0.022 Sum_probs=213.7
Q ss_pred HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020 51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130 (581)
Q Consensus 51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (581)
.+..|..+.++ +...+.|...+|++.+....+++-|+.||+ |-|..++++.++..+|..+=..+. .|.+.
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~------- 135 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVP------- 135 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccc-------
Confidence 35567777778 777788999999999999999999999999 999999999999999998776652 23211
Q ss_pred ccccccCCchhhH--HHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020 131 DITKCQHASGIQM--GVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI 208 (581)
Q Consensus 131 ~~~~~~~~~~~~~--~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 208 (581)
... .+.+++..+.+.++-.......-+.+-+|++++ |..+...-.++..+|..+|.++...+
T Consensus 136 ----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 136 ----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred ----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhcccee
Confidence 122 366778888888777777776777888999998 99888887777777887777776666
Q ss_pred hccc------chhh--HHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCcc
Q 008020 209 QDEV------GRSW--GYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPE 280 (581)
Q Consensus 209 ~~~~------g~~~--~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~ 280 (581)
..+. .|.. .|+...++..+.+....+..++.++.+|+.+.... +
T Consensus 200 V~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~--------------~-------------- 251 (480)
T KOG2563|consen 200 VPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL--------------Q-------------- 251 (480)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh--------------h--------------
Confidence 5433 3433 23322222222222222323222222222111000 0
Q ss_pred ccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeecccc
Q 008020 281 ESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTM 360 (581)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (581)
+.++.... .+-..+++.++..+........|+..+..+...+... +.
T Consensus 252 --------~~~f~~si-----------------------~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s--gY 298 (480)
T KOG2563|consen 252 --------DASFPKSI-----------------------KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPS--GY 298 (480)
T ss_pred --------cCcHHHHH-----------------------HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccc--cC
Confidence 00000000 0001122233333333344444444444332111111 11
Q ss_pred ccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008020 361 QRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKAN 440 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~ 440 (581)
. +...+.......+..++.+.+.+.+.||. |+. +..+..-.....++...+......
T Consensus 299 ~------~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~f--------k~~~~v~~~~~~v~~~~l~~~t~~-------- 355 (480)
T KOG2563|consen 299 E------GVFAGYIGALMIVAGMLGALASGIIADKT-KKF--------KLTTLVLYLFALVGTLMLLTCTLF-------- 355 (480)
T ss_pred C------ccccchhHHHHHHHHHHHHHHHHhhhhhh-hhH--------HHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence 1 11233344444445555555555555432 111 111222222222221112211110
Q ss_pred CCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCC
Q 008020 441 GTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKH 520 (581)
Q Consensus 441 ~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~ 520 (581)
....+.+.....+.|++.....|...++..|..=+..-++.+|+.++...+-+.+-.++.+...+ .
T Consensus 356 -------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~-------~ 421 (480)
T KOG2563|consen 356 -------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE-------D 421 (480)
T ss_pred -------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh-------c
Confidence 11223344455677888888889999999999999999999999987777666665555554432 1
Q ss_pred CCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccccccCCc
Q 008020 521 GWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQV 565 (581)
Q Consensus 521 ~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 565 (581)
.+.+.+. ...-+..+..+++.+++..++.+.+++++.|+.
T Consensus 422 ~~~~~~~-----~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 422 LGPPGNT-----FPANIFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred cCCCCCC-----ccchhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 1111100 111234455666666777777777777666543
No 123
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.38 E-value=1.3e-11 Score=130.37 Aligned_cols=173 Identities=13% Similarity=0.010 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG 111 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 111 (581)
+.......+..+.+.....+++.|+.+ .|+ .+.+...+.+.++..++.++.|+++||+ |||+.+..+..+..++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~ 294 (399)
T PRK05122 219 WPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLL 294 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 333333444556666777788888764 455 3456666778888889999999999998 999999888887777776
Q ss_pred HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020 112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191 (581)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 191 (581)
+..... +.+.+++++++.|++.+...+.......|.+|+++ |+++.++++
T Consensus 295 ~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~ 344 (399)
T PRK05122 295 LLWLAP------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYS 344 (399)
T ss_pred HHHHhc------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 665541 25566778889999998888888888889888887 999999999
Q ss_pred HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccc
Q 008020 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRR 238 (581)
Q Consensus 192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 238 (581)
...++|..+++.+.|++.+..||+..|++.+++.+++++......++
T Consensus 345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998999999998877777766665554443
No 124
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.38 E-value=5.9e-12 Score=131.63 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=132.8
Q ss_pred CCccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-
Q 008020 18 FPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGR- 95 (581)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr- 95 (581)
...++..+.+||++++..+..+.....+..+.+..-+|+++ +.+-+.+..|+++++..++..++.+..|+.+.|. ++
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~ 101 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSV 101 (488)
T ss_pred cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCc
Confidence 33444557889999999999999999888888888899885 4677888899999999999999999999999998 75
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCC
Q 008020 96 YRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEK 175 (581)
Q Consensus 96 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~ 175 (581)
|+-++.+.++.++|.++-......|+ ...++++++|++.|+|.|.. ...-+|+++....+
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~~~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAYVPN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVE 161 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCcc
Confidence 77888899999999988744433333 35889999999999998765 56668999988888
Q ss_pred ChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020 176 DEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI 208 (581)
Q Consensus 176 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 208 (581)
+ |.++++....+..+|..+||.+...+
T Consensus 162 d------R~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 162 D------RPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred c------hHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 8 88999887777777777777665443
No 125
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.38 E-value=4.2e-12 Score=132.91 Aligned_cols=172 Identities=18% Similarity=0.110 Sum_probs=133.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
++++.++......++.....+....++|.|+++.+|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~ 294 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL 294 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence 3334567777778888888888889999999889999999999999999999999999999999998 999987765544
Q ss_pred HHHHH-HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 106 QTFGT-GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 106 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
..+.. .+...... + .+.+.+++..++.+++.+...+...+++.|.+|++. |+
T Consensus 295 ~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~ 347 (394)
T TIGR00883 295 AALLAVPLLMALLD-S--------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RY 347 (394)
T ss_pred HHHHHHHHHHHHhc-C--------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------ee
Confidence 43333 22211110 0 124556667778888888888999999999999988 99
Q ss_pred hHHHH-HHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHH
Q 008020 185 YFFSR-FFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICM 225 (581)
Q Consensus 185 ~~~~~-~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~ 225 (581)
++++. ++....+|..++|.++|++.++.| |+..++...++.
T Consensus 348 ~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 348 TGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 99987 455667899999999999999888 877766555443
No 126
>PRK03699 putative transporter; Provisional
Probab=99.37 E-value=1.3e-11 Score=130.07 Aligned_cols=170 Identities=11% Similarity=0.095 Sum_probs=133.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+.++...+..++.....+++..++|.|+++.+|++..+.+.+.+.+.++..++.+++|+++||+ +||+.+..+..+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 4567777777777788888899999999999999999999999999999999999999999998 999988877766555
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
...+.... ++ .....+..++.|++.+...+...++..+..|++ +++..+
T Consensus 284 ~~~~~~~~---~~---------------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g 332 (394)
T PRK03699 284 LMYLFVNT---DD---------------------PSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVN 332 (394)
T ss_pred HHHHHHHc---CC---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHH
Confidence 54444333 11 333455566778877777787777777766543 455667
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAIL 230 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 230 (581)
+.....++|..++|.+.|++.+..|++..|++..++.+++.+
T Consensus 333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 777788899999999999999999999998877666555544
No 127
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.36 E-value=7.6e-12 Score=126.55 Aligned_cols=178 Identities=21% Similarity=0.167 Sum_probs=145.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHH-HHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFL-GRYRTI-AIFATVQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~l-~~~~~~~ 106 (581)
|.+|.+.+.+++....-|++..|.|.|+.|..|++..++++..+.+-.++..+++++||+|||.+ |||... +++++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999988 777644 4555555
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
+++.+....+ |+ .++.+..+..+++|+-.-+..-.+.....|..|++- .|++
T Consensus 332 ~~~~~~~w~~---~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA 383 (448)
T COG2271 332 TASLVLYWLA---PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA 383 (448)
T ss_pred HHHHHHHHcC---CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence 5555555544 22 235667777777777766666666666789999887 9999
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 187 FSRFFFVIST-GTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 187 ~~~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
.|....+..+ |..++....|++.|.+||...|.+..+..+++.+.+..
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 9999998888 88888888899999999999998777766666555444
No 128
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.35 E-value=2.7e-11 Score=124.52 Aligned_cols=172 Identities=21% Similarity=0.215 Sum_probs=149.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYR-TIAIFATVQTF 108 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-~l~~~~~~~~~ 108 (581)
.++......++..........+++.|..+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+..+..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 344455556667777777788888999888899999999999999999999999999999998 9999 99999988888
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.++..... +.+..++..++.+++.+...+...+++.|..|+++ |++.++
T Consensus 255 ~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 304 (352)
T cd06174 255 GLLLLALAP------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASG 304 (352)
T ss_pred HHHHHHHhc------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHH
Confidence 888776652 26678888999999999999999999999999888 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIF 232 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 232 (581)
..+...++|..++|.+.+.+.+..+|+..|.+..+..+++.+..
T Consensus 305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988999999998887776665543
No 129
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.35 E-value=2.2e-11 Score=128.86 Aligned_cols=171 Identities=15% Similarity=0.015 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020 31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT 110 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 110 (581)
.+.+....++.....+.+..++|.|+.+ .|++..+.+.+.....++..++.++.|+++||+ |||+.+..+.+...++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL 299 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 3444445555566677777888988875 799999999999999999999999999999998 99999888766655555
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 190 (581)
++.... + +.+.+.+..++.|++.++..+...++..|.+|+++ |+++.++.
T Consensus 300 ~~~~~~---~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 349 (406)
T PRK11551 300 AALAAA---P---------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAA 349 (406)
T ss_pred HHHHhc---C---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHH
Confidence 544433 1 14445566667788777778888899999999998 99999999
Q ss_pred HHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHH
Q 008020 191 FFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 191 ~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~ 233 (581)
+....+|..++|.+.|++.++.+ |...+++...+.+++....+
T Consensus 350 ~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 350 VAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987654 55566655555555444433
No 130
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.35 E-value=1.6e-11 Score=130.46 Aligned_cols=179 Identities=10% Similarity=0.018 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--------hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLP--------SATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAI 101 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~ 101 (581)
.++..++..++..........+++.|+.+ .|.+ ....+...+...+...++.++.|+++||+ |||+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~ 286 (418)
T TIGR00889 209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLL 286 (418)
T ss_pred CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHH
Confidence 34455555555555554555677788764 4433 35668888899999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh
Q 008020 102 FATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT 181 (581)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (581)
+.++..++..+...... + ....+.+++.+++.|++.+...+....++.|.+|+++
T Consensus 287 ~~~~~~v~~~l~~~~~~--~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~----- 341 (418)
T TIGR00889 287 SLVAWALRFGFFAYGDP--E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI----- 341 (418)
T ss_pred HHHHHHHHHHHHHHcCc--c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 99888877665554311 0 0124567778899999999888898999999999988
Q ss_pred HHhhHHHHHH-HHHHhhHHHHHHHHHHhhcc------cchhhHHHHHHHHHHHHHHHHHHcc
Q 008020 182 QMAYFFSRFF-FVISTGTLMAVTVLVYIQDE------VGRSWGYGICSICMFTAILIFLSGT 236 (581)
Q Consensus 182 ~r~~~~~~~~-~~~~~g~~i~~~~~~~l~~~------~g~~~~f~i~~~~~~~~~~~~~~~~ 236 (581)
|++++++.+ ...++|..+||.++|++.++ +||+..|.+.+++.+++.++..+..
T Consensus 342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~ 402 (418)
T TIGR00889 342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF 402 (418)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999987 56789999999999999887 4699999877776665554444433
No 131
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.34 E-value=3.2e-11 Score=125.88 Aligned_cols=172 Identities=16% Similarity=0.082 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020 31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT 110 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 110 (581)
.+.+....++...........+|.|+++++|.+..+.+.+.....+...++.+++|+++||+ |||+++.++.+...+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 279 (375)
T TIGR00899 201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY 279 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence 33333444444444445566788899889999999999888877777888889999999998 99999888776555444
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 190 (581)
...... .+.+.+.+.+.+.+++.|...+....+..|..|+ + ++++++++
T Consensus 280 ~~~~~~------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~ 328 (375)
T TIGR00899 280 TGLAAD------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLY 328 (375)
T ss_pred HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHH
Confidence 433333 1255566777888888888778888888888875 4 66899999
Q ss_pred HHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 191 FFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 191 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+...++|..++|.++|.+.+..||+..|++.+++.+++.+....
T Consensus 329 ~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 329 TNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999899999999888777766655443
No 132
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.32 E-value=8.5e-11 Score=123.94 Aligned_cols=176 Identities=13% Similarity=-0.006 Sum_probs=136.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+..|.+....++....++++..++|.|+++ +|++..+.+...+.+.++..++.++.|+++||+ |||+.+..+..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 345666677777788888999999999985 799999999999999999999999999999998 999999888877777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~ 187 (581)
+.++.... +. +...+. .++.|++.+...+.......+..++ ++ |++.+
T Consensus 283 ~~~~~~~~---~~--------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~ 331 (393)
T PRK09705 283 GFCGFIWL---PL--------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLV 331 (393)
T ss_pred HHHHHHHc---cc--------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHH
Confidence 66554432 11 111122 2356788888888777777777754 44 89999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGTR 237 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~ 237 (581)
++.+...+++..++|.+.|++.+..| |...|.+..++.++.+.......+
T Consensus 332 g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 332 AFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999876 777787776666665555444433
No 133
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.32 E-value=6.2e-11 Score=124.48 Aligned_cols=169 Identities=7% Similarity=-0.022 Sum_probs=143.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++..++..++.......+..+.+.|+++ +|.+..+.+.+.+...++..+..+++|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 456777777888888888888999999975 899999999999999999999999999999999 999999999999998
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
..++.++.+ +.+.+++...++|+..|...+....++.+. |+++ |+++.+
T Consensus 283 ~~~~~~~~~------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~ 331 (382)
T TIGR00902 283 RWAIIGAIE------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQA 331 (382)
T ss_pred HHHHHHhHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHH
Confidence 888777652 377788889999999999999999999987 8777 888888
Q ss_pred HHH-HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 189 RFF-FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 189 ~~~-~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
+++ ....+|..++|.++|++.++.|+ ..|++.++..++++++
T Consensus 332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 876 46779999999999999999886 5566666555555444
No 134
>PRK03545 putative arabinose transporter; Provisional
Probab=99.30 E-value=1.4e-10 Score=122.13 Aligned_cols=174 Identities=8% Similarity=-0.077 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.++......++.....++...++++|+.+..|.+..+.+.+.+...++..++.++.|+++||+ |||+.+ .+..+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~ 283 (390)
T PRK03545 206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVC 283 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHH
Confidence 345555556666666677777888898888999999999999999999999999999999998 987654 444433333
Q ss_pred HHHH-HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 110 TGLL-AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
.... ... .+...+++..++.|++.+...+...+.+.+..| +. |+++++
T Consensus 284 ~~~l~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g 332 (390)
T PRK03545 284 LLLLLPAA------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMA 332 (390)
T ss_pred HHHHHHHh------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHH
Confidence 3322 222 125566677778888887777777788888766 46 889999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcc
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGT 236 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 236 (581)
+++...++|..+||.++|++.++.|++..|++.+.+.+++++......
T Consensus 333 ~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 333 LFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 998889999999999999999999999999988877777666655433
No 135
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.30 E-value=4.2e-11 Score=126.65 Aligned_cols=168 Identities=14% Similarity=0.015 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChh---hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008020 36 GIEICERLSTMGIAVNLVTYLGGTMHLPSA---TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGL 112 (581)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~ 112 (581)
...++.......+.++++.|+.+..+.... ..+.+.++..++..++.++.|+++||+ |||+.+..+..+..++.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 304 (408)
T PRK09874 226 VTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIP 304 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHH
Confidence 333444445555667778887764432221 234555666778888899999999998 9999999888777766665
Q ss_pred HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020 113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192 (581)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (581)
..... +.+.+++.+++.|++.+...+...+++.+..+++. |++.+++++.
T Consensus 305 ~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (408)
T PRK09874 305 MSFVQ------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS 354 (408)
T ss_pred HHHhc------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence 55441 25667788889999999999999999989888888 9999999999
Q ss_pred HHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 193 VISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 193 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
..++|..+||.++|.+.+..||+..|++.+++.+++.+..+.
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888777766655444
No 136
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.29 E-value=1.5e-11 Score=108.46 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHH
Q 008020 72 TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLY 151 (581)
Q Consensus 72 ~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (581)
+.+.++..++.++.|+++||+ |||+.+..+.....++.++..... +.+.+.+.++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 59 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS------------------------NITVLIIARF 59 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHHHH
Confidence 445677888999999999998 999999999888888877766552 2677888899
Q ss_pred HHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 152 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 152 l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
+.|++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+.+.+.+..+|++.|++..+..++..+.
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 9999999999999999999999999998889999988777665555544
Q ss_pred HHH
Q 008020 232 FLS 234 (581)
Q Consensus 232 ~~~ 234 (581)
...
T Consensus 134 ~~~ 136 (141)
T TIGR00880 134 LAF 136 (141)
T ss_pred Hhh
Confidence 443
No 137
>PRK12382 putative transporter; Provisional
Probab=99.29 E-value=7.5e-11 Score=124.22 Aligned_cols=165 Identities=14% Similarity=0.097 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008020 36 GIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAI 115 (581)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~ 115 (581)
...++....+..+..+++.|+++ .|++ +.+.....+.++..++.++.|++.||+ ||||.+..+..+..++.++...
T Consensus 223 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~ 298 (392)
T PRK12382 223 LGLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWL 298 (392)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHH
Confidence 33344455666677778888764 4554 345566677778889999999999998 9999999988888887776655
Q ss_pred hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHH
Q 008020 116 STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVIS 195 (581)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 195 (581)
. ++ .+.+++..++.|++.+...+...+...|.+|+++ |++++++++...+
T Consensus 299 ~---~~---------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (392)
T PRK12382 299 A---PT---------------------AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD 348 (392)
T ss_pred c---cc---------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 4 11 5556778888899988888888888899999888 9999999999999
Q ss_pred hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 196 TGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 196 ~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+|..++|.+.|++.++.||+..|.+.+++.+++.+..+.
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888777766655443
No 138
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.28 E-value=7.9e-11 Score=131.82 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHH
Q 008020 71 VTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISL 150 (581)
Q Consensus 71 ~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (581)
..+..++..++.+++|+++||+ |||+++.++.++.+++.++.++..+ ...+++.+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s------------------------~~~ll~~~ 655 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS------------------------ESAMIALL 655 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc------------------------HHHHHHHH
Confidence 4456688889999999999998 9999999999888888877766521 44466667
Q ss_pred HHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020 151 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAIL 230 (581)
Q Consensus 151 ~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 230 (581)
++.+++.++..+...++++|++|.+. |++++++.+....+|+++||.+++++.+. +...+|++.+++.+++.+
T Consensus 656 ~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l 728 (742)
T TIGR01299 656 CLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL 728 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 77777777788889999999999998 99999999999999999999999987663 456677777666665555
Q ss_pred HHHH
Q 008020 231 IFLS 234 (581)
Q Consensus 231 ~~~~ 234 (581)
+..+
T Consensus 729 l~~~ 732 (742)
T TIGR01299 729 LALK 732 (742)
T ss_pred HHHh
Confidence 4443
No 139
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.27 E-value=1.7e-10 Score=121.06 Aligned_cols=159 Identities=13% Similarity=0.192 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 008020 39 ICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTK 118 (581)
Q Consensus 39 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~ 118 (581)
+...+.+.....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+++..+..+..++..... .
T Consensus 210 ~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-- 284 (381)
T PRK03633 210 IISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h--
Confidence 33334444455678888875 699999999999999999999999999999998 999999888777776654432 1
Q ss_pred CCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhH
Q 008020 119 QPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGT 198 (581)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 198 (581)
.......+.+.+++.+...|...+.+.|..|+++ ++...+.++...++|.
T Consensus 285 ------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 1123345566777767778888898999988776 7777778788889999
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020 199 LMAVTVLVYIQDEVGRSWGYGICSICMFTAILIF 232 (581)
Q Consensus 199 ~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 232 (581)
.+||.++|++.+++||++.|.+.+.+.++.....
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776665554443
No 140
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.27 E-value=5.6e-11 Score=126.33 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008020 45 TMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP 124 (581)
Q Consensus 45 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (581)
..++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+....+++.++..+. +
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~---~---- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM---P---- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---c----
Confidence 355667889999988999999999999999999999999999999997 88888888877777776665543 1
Q ss_pred CCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHH
Q 008020 125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTV 204 (581)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 204 (581)
+.....++.++.|++.+...+...+++.|..|++. |++++++++...++|..+||.+
T Consensus 311 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 311 -----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHH
Confidence 25556677778888888777778889999999888 9999999999999999999999
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020 205 LVYIQDEVGRSWGYGICSICMFTAILIF 232 (581)
Q Consensus 205 ~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 232 (581)
.|++.+..|++..+++.+++.++..++.
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 395 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLL 395 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 9999999898888876665544433333
No 141
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.27 E-value=7.4e-11 Score=126.83 Aligned_cols=176 Identities=16% Similarity=0.047 Sum_probs=123.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--hHHH-HHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGR--YRTI-AIFATV 105 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--r~~l-~~~~~~ 105 (581)
+.+|...+..++.....++...++|.|+++..|++..+.+.....+.++..++.+++|+++||+ ++ |+.. .....+
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l 331 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 331 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence 4577788888888888888999999999988999999999988888999999999999999997 43 3322 222223
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+.+.+... .+.....+..++.|.+..........+..|.+|++. |++
T Consensus 332 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 383 (452)
T PRK11273 332 VTIATIVYWLNPA----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 383 (452)
T ss_pred HHHHHHHHHHhcc----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhh
Confidence 3333332222100 113333344444444333222333455679999988 999
Q ss_pred HHHHHHHHHHhhHHH-HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLM-AVTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i-~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
++++.+...++|+.+ +|.+.|++.++.||+..|++..+..+++++...
T Consensus 384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999998888888654 799999999999999999877766666554444
No 142
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.27 E-value=3.8e-09 Score=112.03 Aligned_cols=355 Identities=14% Similarity=0.099 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChhh-hhhHHHHH----HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSAT-SANIVTDF----MGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-~~~~~~~~----~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.+.+.+.....+....+...+...+.+.+... .+...... .+...+..+..|.++||+ |||..+........+.
T Consensus 27 ~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~ 105 (463)
T KOG2816|consen 27 LFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILP 105 (463)
T ss_pred HHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHh
Confidence 33333333333333455555655555443332 22223333 567778888999999999 9999999999888887
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHH--hccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIAL--GTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gl--g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
.+...+. .+++++ +.++ +.+.......++++|...+++ |...+
T Consensus 106 ~~~~~~~--------------------------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~ 150 (463)
T KOG2816|consen 106 ALCLLFQ--------------------------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSI 150 (463)
T ss_pred HHHHHHH--------------------------HHHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHH
Confidence 7766654 222322 3332 334566788899999999998 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCC-hhHHHHHHHHHHHhhcccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGS-PIVHICQVVVAARKKRKVE 266 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 266 (581)
++.+.....+..++|..++++.+..|...+|.++.+..++..+...+..++...++.+.. +.. ..
T Consensus 151 gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~--------------~~ 216 (463)
T KOG2816|consen 151 GLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR--------------EL 216 (463)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc--------------cc
Confidence 999999999999999999999999999999999998888877665554443322221110 000 00
Q ss_pred cCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhh
Q 008020 267 LPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTY 346 (581)
Q Consensus 267 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 346 (581)
.|.+ .+... ...+++.... ....|..+.++... .....--.
T Consensus 217 ~~~~-------------~~~~~----------------------~~~~~~~~~~--~~~~r~~l~l~l~~--~~~~~~~~ 257 (463)
T KOG2816|consen 217 TPGS-------------LDSSH----------------------VADAFQSLTK--VGPDRLLLLLLLVA--FLSSLPEA 257 (463)
T ss_pred CCCc-------------ccchh----------------------hhhhhhhhcc--cCCCccchHHHHHH--HHHHHHHh
Confidence 0000 00000 0000000000 01112222211111 11111111
Q ss_pred cccc-ceeeeeccccccccccccccchhhh----hhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHH
Q 008020 347 AQMI-TFSVEQATTMQRSIGNFKIPAASLT----VFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSAL 421 (581)
Q Consensus 347 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i 421 (581)
.... ..+.+ ....++.-....+.+. ....+..++..|+..+.. ..| +.+.+|+....+
T Consensus 258 ~~~~~~~~~y----l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l---~~~----------~~i~lGl~~~~~ 320 (463)
T KOG2816|consen 258 GGASDVLLLY----LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL---GEK----------RLISLGLLSEFL 320 (463)
T ss_pred cCceeEEEEE----EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhh----------hHhhHHHHHHHH
Confidence 1111 11111 1111111011112122 222333333333332221 122 237788888888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHH
Q 008020 422 GMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFF 501 (581)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~ 501 (581)
..++.++.+ ..|... .............|...+++...+.++.+|+.+++......+.+.
T Consensus 321 ~~~~~af~~-------------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~ 380 (463)
T KOG2816|consen 321 QLLLFAFAT-------------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV 380 (463)
T ss_pred HHHHHHHhc-------------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhh
Confidence 888888763 222222 223344455677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 008020 502 FSSLLVSIVKAATG 515 (581)
Q Consensus 502 ~g~~~~~~i~~~~~ 515 (581)
+++.+.+.+...+.
T Consensus 381 ~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 381 VSPALYGNIFALTL 394 (463)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998876664
No 143
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.26 E-value=5.9e-10 Score=113.40 Aligned_cols=78 Identities=12% Similarity=-0.090 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc---------
Q 008020 141 IQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE--------- 211 (581)
Q Consensus 141 ~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~--------- 211 (581)
.++..++++.++.|.|.+...+..++++++..++++ +.+.+++...+..+|..++|++++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 458889999999999999999999999999999888 99999999999999999999999977631
Q ss_pred -------cchhhHHHHHHHH
Q 008020 212 -------VGRSWGYGICSIC 224 (581)
Q Consensus 212 -------~g~~~~f~i~~~~ 224 (581)
..|+++|++.++.
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~ 101 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGA 101 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 3688888844443
No 144
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.26 E-value=1.5e-10 Score=121.04 Aligned_cols=176 Identities=13% Similarity=-0.029 Sum_probs=129.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHH-HHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRT-IAIFATVQT 107 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~-l~~~~~~~~ 107 (581)
|.++...+..++.....+.+..+++.|+++.+|.+..+.+.+.+...++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 4567777888888888888999999999999999999999999999999999999999999998 88861 111111111
Q ss_pred HHH---HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 108 FGT---GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 108 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
++. .+..... +. ............+.+.+.+ ..+...+++.|.+|+++ |+
T Consensus 294 ~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g 346 (399)
T TIGR00893 294 IAGLVLSLLMFAT--NY------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AG 346 (399)
T ss_pred HHHHHHHHHHHHh--cc------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HH
Confidence 111 1111110 00 0112333333333344434 67899999999999998 99
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHH
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIF 232 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~ 232 (581)
+++++.+...++|..++|.+.|++.+..| |+..|.+.++..+++.+..
T Consensus 347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888 9999887776666555443
No 145
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.26 E-value=2.6e-10 Score=120.67 Aligned_cols=177 Identities=14% Similarity=0.085 Sum_probs=131.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIA-IFATVQT 107 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~-~~~~~~~ 107 (581)
|.++...+..++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 45667777788888889999999999986 5899999999988999999999999999999998 9888764 3333333
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.+.+....... ..+.+..++..++.|++.+...+. .+...|.. +++ |++++
T Consensus 300 ~~~~~l~~~~~~~-------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~------~g~~~ 352 (402)
T TIGR00897 300 IFTLALYYIPQHF-------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKH------KGAAM 352 (402)
T ss_pred HHHHHHHHHHHcc-------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cch------hHHHH
Confidence 3333332221000 012455566777778877765443 45566654 446 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
++.+...++|..++|.+++.+.+..||+..|++.+++.+++.++..+
T Consensus 353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888776666555443
No 146
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.24 E-value=3.3e-09 Score=107.86 Aligned_cols=129 Identities=15% Similarity=0.058 Sum_probs=90.3
Q ss_pred HHHHHHHhccccCC---Ch----hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHHHHHHHHHHhhcCC
Q 008020 49 AVNLVTYLGGTMHL---PS----ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYR-TIAIFATVQTFGTGLLAISTKQP 120 (581)
Q Consensus 49 ~~~l~~yl~~~l~~---~~----~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-~l~~~~~~~~~~~~~~~~~~~~~ 120 (581)
..+.|+|+++..+- +. +-.+...++..+...+..|+.|.++|.. |+|| .+....++..+.+.++.+...
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~-- 111 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP-- 111 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence 35567777765443 33 2344556677778888889999999998 7655 555566666666666666621
Q ss_pred CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM 200 (581)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 200 (581)
++..+...+...+..++..+......+++.|..++++ .++..+.-+....+|+.+
T Consensus 112 -------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i 166 (438)
T COG2270 112 -------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVI 166 (438)
T ss_pred -------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchH
Confidence 1236666777778889999999999999999999988 666666655566777766
Q ss_pred HHHHH
Q 008020 201 AVTVL 205 (581)
Q Consensus 201 ~~~~~ 205 (581)
.-+++
T Consensus 167 ~li~~ 171 (438)
T COG2270 167 LLIFV 171 (438)
T ss_pred HHHHH
Confidence 65443
No 147
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.24 E-value=1.9e-10 Score=125.13 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=114.6
Q ss_pred HHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020 47 GIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP 126 (581)
Q Consensus 47 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (581)
....++|.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+++..+.++..++.++......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567899999889999999999999999999999999999999998 9999988877665555443332211
Q ss_pred CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020 127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV 206 (581)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 206 (581)
...+...+..++.+....+..+..++++.|.+|++. |++.+++++...++|..+||.++|
T Consensus 364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHH
Confidence 113333333444333333345677788899999888 999999999999999999999999
Q ss_pred HhhcccchhhHHHHHHH
Q 008020 207 YIQDEVGRSWGYGICSI 223 (581)
Q Consensus 207 ~l~~~~g~~~~f~i~~~ 223 (581)
++.+.+||+..+.+...
T Consensus 424 ~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 424 LIAQRLDLGTALASLSF 440 (496)
T ss_pred HHhccCChHHHHHHHHH
Confidence 99999999887764443
No 148
>PRK15075 citrate-proton symporter; Provisional
Probab=99.24 E-value=1.5e-10 Score=123.80 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH-HH
Q 008020 35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG-LL 113 (581)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~-~~ 113 (581)
....++....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+++..+....++... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 3444556677888889999999988999999999888888899999999999999998 999988776554333221 11
Q ss_pred HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH-
Q 008020 114 AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF- 192 (581)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 192 (581)
......+ ......+..++.+++.+...+...++..|.+|++. |++++++.+.
T Consensus 323 ~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~ 375 (434)
T PRK15075 323 SWLVAAP---------------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSL 375 (434)
T ss_pred HHHHcCC---------------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHH
Confidence 1111101 12223333444556666666667788999999998 9999998544
Q ss_pred HHHhhHHHHHHHHHHhhcccchh
Q 008020 193 VISTGTLMAVTVLVYIQDEVGRS 215 (581)
Q Consensus 193 ~~~~g~~i~~~~~~~l~~~~g~~ 215 (581)
...+++.++|.+.|++.+..|++
T Consensus 376 ~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 376 ATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCc
Confidence 34456778999999999988864
No 149
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.24 E-value=2.4e-10 Score=122.12 Aligned_cols=174 Identities=15% Similarity=0.064 Sum_probs=112.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020 32 ALSLGI-EICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT 110 (581)
Q Consensus 32 ~~~~~~-~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 110 (581)
+..... .++....+|++..++|.|+.+.+|++..+.+...+...+...++.++.|+++||+ |||+.+.++.++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~ 323 (432)
T PRK10406 245 FIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFT 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 433333 3445778889999999999988999999998888888888888899999999998 99998877655443333
Q ss_pred HHHHH-hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 111 GLLAI-STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 111 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
..... ..... +....+....+...+.+...+....+..|.+|++. |++++++
T Consensus 324 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~ 376 (432)
T PRK10406 324 VPILSALQNVS---------------------SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGL 376 (432)
T ss_pred HHHHHHHHcCC---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhH
Confidence 22211 11100 11211111222223333334556778899999999 9999999
Q ss_pred HHHHHH-hhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008020 190 FFFVIS-TGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 190 ~~~~~~-~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~ 234 (581)
.+...+ +++..+|.+.+++. ..| |...+++..+..+++.+..++
T Consensus 377 ~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 377 SYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 665544 33445888888664 345 555555555555555444443
No 150
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.23 E-value=9.2e-11 Score=124.81 Aligned_cols=172 Identities=15% Similarity=0.035 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 31 AALSLGIEICERLSTMGIAVNLVTYLGGT---MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
++.+.+..++....+......++.|+.+. .+.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+.++..
T Consensus 225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~ 303 (420)
T PRK09528 225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMA 303 (420)
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHH
Confidence 34334333344444444444567776543 356667888999999999999999999999998 99999998888888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.++..++. +.+.+.+.+.+.+++.+...+....++.|.+|++. |++..
T Consensus 304 ~~~~l~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~ 353 (420)
T PRK09528 304 VRIIGSGFAT------------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIY 353 (420)
T ss_pred HHHHHHHhcc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeee
Confidence 8777776552 25667788888888888877777888899999887 87776
Q ss_pred HH-HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 188 SR-FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 188 ~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
+. ++...++|..++|.+.|++.+..||+..|.+.+++.++..++..
T Consensus 354 ~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 354 LVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 65 66778899999999999999999999999976666555444433
No 151
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.23 E-value=2.5e-10 Score=122.09 Aligned_cols=177 Identities=14% Similarity=0.031 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--hHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGR--YRTIAIFATVQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--r~~l~~~~~~~ 106 (581)
+.+|.+.+..++....++++..++|.|+.+++|++..+.+...+.+.++..++.+++|+++||+.+| ++......+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 3567677777777777778888999999888999999999999999999999999999999997322 22222221111
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.+....+... +. .+.....+..++.|++.............|.+|++. |+++
T Consensus 323 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 374 (434)
T PRK11663 323 LLSVGSLWLM---PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAA 374 (434)
T ss_pred HHHHHHHHHc---cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhH
Confidence 1111111111 11 012222233333333322222233455688888887 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
.++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+...
T Consensus 375 ~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 375 TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877776655544433
No 152
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.22 E-value=1.5e-10 Score=122.01 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008020 33 LSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGL 112 (581)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~ 112 (581)
.+.....+.....+....++|.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++..+..+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 320 (405)
T TIGR00891 242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIP 320 (405)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHH
Confidence 334444445555666777889999989999999999999999999999999999999998 9999988887655333222
Q ss_pred HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020 113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192 (581)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (581)
.... . .+.+.+.+..++.++..+...+..++++.|.+|+++ |++++++.+.
T Consensus 321 ~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~ 371 (405)
T TIGR00891 321 VFAI---G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQ 371 (405)
T ss_pred HHHh---C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHH
Confidence 2111 0 114445555566666666777888899999999988 9999999999
Q ss_pred HHHhhHHHHHHHHHHhhcccc-hhhHHHH
Q 008020 193 VISTGTLMAVTVLVYIQDEVG-RSWGYGI 220 (581)
Q Consensus 193 ~~~~g~~i~~~~~~~l~~~~g-~~~~f~i 220 (581)
..++|..++|.+.|++.++.| |+..+..
T Consensus 372 ~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 372 LGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 999999999999999999988 8776654
No 153
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.21 E-value=4.7e-10 Score=121.71 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHH-HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVT-DFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.|......++.....+....+.++|+.+.+|++..+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++.+++
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 344444456666666666778888988889999999999874 55689999999999999998 9999887766655554
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.+........+ .+...+.+..++..+..|...+...++..+..+++. +++.+++
T Consensus 303 ~l~~~~l~~~~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl 356 (491)
T PRK11010 303 NAGYWLLSITD--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFAL 356 (491)
T ss_pred HHHHHHHHhcc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHH
Confidence 43322111101 113334444555454555555667788888888888 8888999
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccc
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTR 237 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 237 (581)
.+...++|..+++.+.|++.+..||+..|.+..++.+.+++.....++
T Consensus 357 ~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 357 LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998899999888889999999999999999888887777766655543
No 154
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.19 E-value=7.7e-10 Score=118.46 Aligned_cols=183 Identities=15% Similarity=0.091 Sum_probs=151.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch--HHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRY--RTIAIFATV 105 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr--~~l~~~~~~ 105 (581)
.|.+..-++..++.+-+..++......|.++++|++..+...+..+..+.+.++++++|++.||+ |.| +++..++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 35677788888888889999999999999999999999999999999999999999999999999 998 888888776
Q ss_pred HHHHHHHHHH--hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 106 QTFGTGLLAI--STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 106 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
..+..+...+ .... ....+.+.+++.-++.|+..|...+..-++.+++.|+++ .
T Consensus 359 ~~~i~~~g~~G~~~~~------------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e 414 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPSF------------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------E 414 (477)
T ss_pred HHHHHHHHHHHhhhcc------------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------h
Confidence 6443332222 1100 001236778888889999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHc
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
+..++++.+.....+.+||++.|.+.+..| .|..+....++.+++++++...
T Consensus 415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999887 7888877776777776666543
No 155
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.16 E-value=3.7e-10 Score=121.43 Aligned_cols=172 Identities=12% Similarity=0.007 Sum_probs=135.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHH--HH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF-LGRYRTIAIFA--TV 105 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Grr~~l~~~~--~~ 105 (581)
|.++..+...++..++++....+++.|+++ +|++..+.+.+.+...++..++.+++|+++||. .++|+...++. +.
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 456666777777888888888899999864 799999999999999999999999999999984 13444343332 22
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+++... .+.+.+++.+++.|++.++..++..+++.|.+|+++ +++
T Consensus 320 ~~l~~ll~~~~------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~ 369 (455)
T TIGR00892 320 NGLTHLLCALA------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSS 369 (455)
T ss_pred HHHHHHHHHHh------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hhh
Confidence 23333333333 126667888999999999999999999999999888 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEV-GRSWGYGICSICMFTAILI 231 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~ 231 (581)
.+++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+.
T Consensus 370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999999999999999999999998877 4999999887766655443
No 156
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.16 E-value=2.2e-08 Score=106.57 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=114.8
Q ss_pred HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc--cc--chHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008020 52 LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF--LG--RYRTIAIFATVQTFGTGLLAISTKQPQLRPPPC 127 (581)
Q Consensus 52 l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (581)
...|+++++|+++++.....+...+...+-+ +.|.++|-+ .| ||+-++++.++..++.+.++.....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp-~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-------- 82 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIKP-LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-------- 82 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHHhh-hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------
Confidence 4467889999999998887777776666554 559999986 23 4445556666665555544443110
Q ss_pred CCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHH
Q 008020 128 QATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVY 207 (581)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 207 (581)
..+.....+..++..+|......+.-+++.|...++... |+...++.+.+..+|++++..++|.
T Consensus 83 ------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~ 146 (433)
T PF03092_consen 83 ------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGP 146 (433)
T ss_pred ------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 112444556667788999999999999999998766533 7788888888899999999999999
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 208 IQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 208 l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+.+..+++..|.+..++.++..+...+
T Consensus 147 l~~~~~~~~~f~i~~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 147 LLDSFGPQGVFLISAALPLLMLIVALF 173 (433)
T ss_pred hhhcCCCeEEehHHHHHHHHHHHHHHH
Confidence 999999999998887665555444333
No 157
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.15 E-value=2.1e-09 Score=110.24 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=143.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+.++...+..++...+.|...+++.+++++..|++....+++...+.++..++.+++|+++|| +.|+.+.....+.++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 467888888999999999999999999999999999999999999999999999999999999 788888888777777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
..+.+.+..+ +.+...+..++.|++.+........-.++ ..++. ++.+.+
T Consensus 289 ~~l~l~~~~~-----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~a~s 338 (394)
T COG2814 289 ALLALTFTGA-----------------------SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADLAGS 338 (394)
T ss_pred HHHHHHHhcc-----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHHHHH
Confidence 7766655421 24555555555666655544444444555 22455 888999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccc
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTR 237 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 237 (581)
++....|+|..+|..++|.+.+++|+....++++++.++++...+...+
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888888777665443
No 158
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.14 E-value=1e-09 Score=117.88 Aligned_cols=167 Identities=11% Similarity=-0.014 Sum_probs=116.4
Q ss_pred HHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020 47 GIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP 126 (581)
Q Consensus 47 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (581)
.+..+.+ +..+++|++..+.+.......++..++.+++|+++||+ |||+.+.++.++..++.++..+......
T Consensus 302 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 374 (481)
T TIGR00879 302 AIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV----- 374 (481)
T ss_pred ehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-----
Confidence 3344444 44457799998888888899999999999999999998 9999999988877777666653211000
Q ss_pred CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020 127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV 206 (581)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 206 (581)
...+.......+....++.+.......+....+..|.+|++. |+++.++.+...++|..++|.+.+
T Consensus 375 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~ 440 (481)
T TIGR00879 375 --------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFP 440 (481)
T ss_pred --------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000112222222222222222334667777899999888 999999999999999999999999
Q ss_pred HhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 207 YIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 207 ~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
++.++.+|++.|++.+++.+++.++..+
T Consensus 441 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 441 TMLESIGVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred HHHHhcCccceehhHHHHHHHHHHHHhe
Confidence 9988889999988777665655554443
No 159
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.14 E-value=6.2e-10 Score=119.17 Aligned_cols=176 Identities=15% Similarity=0.016 Sum_probs=120.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+.+|...+..++.....+++..++|.|+++..|++..+.++....+.+...++.+++|+++||+ |+++....+.....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence 3566776777777778888999999999988999999999999999999999999999999998 754422233222211
Q ss_pred ---HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 109 ---GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 109 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
+.+.+... +. .+.+...+..++.|.+..+..........|.+|++. |++
T Consensus 330 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 381 (438)
T TIGR00712 330 VTIAVIVYWMN---PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 381 (438)
T ss_pred HHHHHHHHHhc---CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence 11111111 10 012223333344444332222222345678899888 999
Q ss_pred HHHHHHHHHHhhH-HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGT-LMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 186 ~~~~~~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
+.++.+...++|+ .++|.+.|.+.++.||...|++..+..+++.+..+
T Consensus 382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 430 (438)
T TIGR00712 382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 430 (438)
T ss_pred ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 9999988878775 68999999999999999998876665555544433
No 160
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.12 E-value=2.4e-09 Score=112.42 Aligned_cols=169 Identities=8% Similarity=0.013 Sum_probs=132.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++...+..++...........++.|+. +.|++..+.+.+.+...++..+..++.|++.||+ |+|+++..+.+...+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 45676777777777777777788889986 5899999999999988889999999999999998 999999998888887
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.++.... ++.+.+++..++.|++.+...+....+..+. ++++ +++..+
T Consensus 283 ~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~ 331 (382)
T PRK11128 283 RWGLMGST------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQA 331 (382)
T ss_pred HHHHHHhh------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHH
Confidence 77666544 2367778889999999888888888887775 4444 677788
Q ss_pred HHH-HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 189 RFF-FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 189 ~~~-~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
.++ ....+|..+||.++|.+.+..|+. .|++.+++.++++.+
T Consensus 332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 332 LYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH
Confidence 765 456678899999999999998874 555555554544433
No 161
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.12 E-value=4.7e-10 Score=116.75 Aligned_cols=162 Identities=14% Similarity=0.062 Sum_probs=119.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--HH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT--VQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~--~~ 106 (581)
+.++.+.+..++.....+.+..+++.|+.+.+|++..+.+...+...++..++.++.|+++||+.+||+....... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567777777777888888888999999999999999999999999999999999999999986244443322211 11
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.++....... +. .+.....+..++.|+......+....+..|.+|++. |+++
T Consensus 296 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 347 (379)
T TIGR00881 296 IVSLLVYWLN---PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTA 347 (379)
T ss_pred HHHHHHHhcC---cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHH
Confidence 1121111111 10 123344555556666555555666778899999998 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGY 218 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f 218 (581)
.++.+...++|..++|.+.|++.+..||++.|
T Consensus 348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999998754
No 162
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.12 E-value=1.9e-09 Score=109.64 Aligned_cols=164 Identities=11% Similarity=0.074 Sum_probs=125.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGG--TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+..+...+..++....--++..+++.|+.+ .+|++..+.+...+.+..+..++.+++++++||+ |+||++.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 445555566666655666778899999975 4799999999999999999999999999999998 9999998888777
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
+++.++.... +. .. ...+..+.|++.+..+|...+...+.+|++. +++
T Consensus 219 ~~~~~l~~~~---~~---------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~a 266 (310)
T TIGR01272 219 VLLSIGAALT---HG---------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQG 266 (310)
T ss_pred HHHHHHHHHc---CC---------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhh
Confidence 7766555433 11 11 2234557899999999999999988887643 233
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMF 226 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~ 226 (581)
.++. ....+|+.+.|.+.|.+.|..|.+.+|++..++.+
T Consensus 267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~ 305 (310)
T TIGR01272 267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL 305 (310)
T ss_pred HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 3443 45679999999999999998998888886655533
No 163
>PRK10504 putative transporter; Provisional
Probab=99.11 E-value=1.9e-09 Score=116.48 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=124.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.+...+...++...++.......|.|++..+|.+..+.+.......++..++.++.|+++||+ |||+++..+.++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 3456666667777777666666778888878899999999998888888888889999999999 999999988887777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.++..+... . .....+.+..++.|++.+...+..+.+..+.+|++. ++.+++
T Consensus 340 ~~~~~~~~~~--~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~ 392 (471)
T PRK10504 340 VSLLFMLVAL--L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNS 392 (471)
T ss_pred HHHHHHhccc--c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHH
Confidence 7665554311 0 113334455667788888888888899999999888 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccch
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVGR 214 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g~ 214 (581)
+.+....+|..+|+.++|.+.+..|+
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988665554
No 164
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.2e-09 Score=104.37 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=132.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Q 008020 21 DRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIA 100 (581)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~ 100 (581)
........+.+|.+.++-++.....+=+...-+.+.++.+|+|+.+++.+.+..+..+.+..++.|.++||+ ||+-..+
T Consensus 256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv 334 (459)
T KOG4686|consen 256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV 334 (459)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence 334455567899999998888888777777778899999999999999999999999999999999999999 9997776
Q ss_pred HHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHH
Q 008020 101 IFATV-QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKE 179 (581)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~ 179 (581)
.+..+ ...+...+.++ .+.-+++..++|+.........++.++-..|+++
T Consensus 335 ~~a~~~tl~~H~~l~Ft--------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q--- 385 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFT--------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ--- 385 (459)
T ss_pred HHHHHHHHHHhhhHHhh--------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH---
Confidence 66544 44455555554 3335677888888888877778899999999998
Q ss_pred HhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccc
Q 008020 180 KTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVG 213 (581)
Q Consensus 180 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g 213 (581)
.|++++..+...|+|-.+.|+++|.+.+.-|
T Consensus 386 ---LGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 386 ---LGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred ---hcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 9999999999999999999999999988765
No 165
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.10 E-value=1.4e-09 Score=115.56 Aligned_cols=165 Identities=10% Similarity=-0.017 Sum_probs=118.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHH-HHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRT-IAIFATVQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~-l~~~~~~~ 106 (581)
+.+|+..+..++....++++..++|.|+++ ..|.+..+++.......++..++.+++|+++||+ +||+. +....+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 356778888888888999999999999986 3577888899999999999999999999999998 87764 33333333
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.++.. ..... +. .....++..+.++|.....+.......|.+|++. |+++
T Consensus 321 ~~~~~-~~~~~--~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a 370 (412)
T TIGR02332 321 AAGWL-LASAT--DH---------------------NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIA 370 (412)
T ss_pred HHHHH-HHHhc--CC---------------------HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHH
Confidence 33322 22110 11 1111222223333333333444455567788887 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSIC 224 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~ 224 (581)
+++.+...++|..++|.+.|.+.+..| |++.|++..++
T Consensus 371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999999875 99988766554
No 166
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.10 E-value=4.9e-09 Score=111.02 Aligned_cols=172 Identities=11% Similarity=-0.136 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.++...+...+.....+......|.|+.+.+|++..+.+.......++..++.++.|+++||+ |+|+.+.++.++..++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 455555555566666666667788888888999999999888878888899999999999998 9999999988887777
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.++......... .+...+.++.++.++|.+...+......... ++++ |++..+.
T Consensus 295 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~ 348 (406)
T PRK15402 295 LLLAALATVISS-------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAA 348 (406)
T ss_pred HHHHHHHHHccc-------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHH
Confidence 776655421110 1255567788888999888777666655443 3466 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTA 228 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 228 (581)
++....+|..+|+.+.+.+.+..++....+...+..++.
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999988777666555554444443
No 167
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.10 E-value=2.9e-09 Score=112.09 Aligned_cols=175 Identities=16% Similarity=0.040 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFM-GTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
..+..+...++...+......+.+.|+.+ .|++.++.+.+..... ....++.+++|++.||+ |+|+.+..+..+..+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 45556666677777777777788889875 7999999999888775 46677889999999998 999999887766533
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~ 187 (581)
..+.......... ......++....+.+++.|...+...+...+..++ +. +++.+
T Consensus 287 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~ 342 (390)
T TIGR02718 287 LALLWFAQAAFWL------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDV 342 (390)
T ss_pred HHHHHHHHHHccc------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHH
Confidence 3332221111000 01133344444555666677777777777777765 66 89999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAIL 230 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 230 (581)
++.+...++|..+||.++|++.+..||+..|.+..++.+++..
T Consensus 343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887766655543
No 168
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.08 E-value=1.2e-09 Score=116.84 Aligned_cols=161 Identities=15% Similarity=0.049 Sum_probs=123.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++..++..++.....+......+.|.+..++ +..+.+.+.....++..++.+++|+++||+ |||+++.++.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 456667777777777777666666666666666 556677777788899999999999999998 999999999888877
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHH-HhHHhhHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKE-KTQMAYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~ 187 (581)
+.++..+.. .+.+.+++..++.+++.+...+...++++|..+.++... ...+|.++
T Consensus 300 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 356 (437)
T TIGR00792 300 GYLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVY 356 (437)
T ss_pred HHHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHH
Confidence 776655431 124556677778899999888999999999877432111 11278889
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGR 214 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~ 214 (581)
++++....+|..+++.+.|++.+..||
T Consensus 357 ~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 357 SVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998876666
No 169
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.08 E-value=1.6e-08 Score=110.47 Aligned_cols=206 Identities=13% Similarity=0.190 Sum_probs=151.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
.+.+.+++....+......++.....+-+.+.++++.++.|++.+.+-++..+...+..+.+-|. -|-|.+-++.+++.
T Consensus 95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG 173 (735)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence 34555555555555555558888888889999999999999999999999999999999999996 66677888999999
Q ss_pred HHHHHHHHhhcCCC------------CC-C-------------CCCCCCccc-cccCCchh-hHHHHHHHHHHHHHhccC
Q 008020 108 FGTGLLAISTKQPQ------------LR-P-------------PPCQATDIT-KCQHASGI-QMGVLYISLYLIALGTGG 159 (581)
Q Consensus 108 ~~~~~~~~~~~~~~------------~~-~-------------~~~~~~~~~-~~~~~~~~-~~~~l~~~~~l~glg~g~ 159 (581)
+|.+++++-+.+.. .. + +.|...... ++.+.+.. -..+++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 99998876533210 00 0 011111111 11112222 334789999999999999
Q ss_pred cccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc------------------cc-chhhHHHH
Q 008020 160 LKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD------------------EV-GRSWGYGI 220 (581)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~------------------~~-g~~~~f~i 220 (581)
.++.-.+|+-|...+++ -...+++++....+|.++|.++++++.. +. .|...|++
T Consensus 254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 99999999999999888 8889999999999999999999887632 12 27778888
Q ss_pred HHHHHHHHHHHHHHcccccc
Q 008020 221 CSICMFTAILIFLSGTRRYR 240 (581)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~ 240 (581)
.+.+.++..+.+++..+.++
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHhCcccCc
Confidence 88777776666666555443
No 170
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.08 E-value=2.5e-09 Score=108.65 Aligned_cols=185 Identities=16% Similarity=0.050 Sum_probs=144.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
.+..|.+.+.++..--++-++..++|.|++++++.++.+++.....+.+.+.+..+.+|+|+||+ |.+|++......++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 35679999999999889999999999999999999999999999999999999999999999999 99998888888888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++..+......... +..+...+....+..++..|.-...+..++...++++ -+...
T Consensus 296 ~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~ 351 (417)
T COG2223 296 LAAALLSLFLTGFG-----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVT 351 (417)
T ss_pred HHHHHHHccccccc-----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHH
Confidence 87777765411000 0112333444344455555555666677777777653 68888
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGTR 237 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~ 237 (581)
++.....++|++.-|...+...+..| +..+|++...+.+++.+..+....
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887 888888888777777766555443
No 171
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.07 E-value=1.8e-09 Score=111.72 Aligned_cols=155 Identities=12% Similarity=0.093 Sum_probs=127.9
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIA-VNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
|.++......++.....+... .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 345666666666666666666 6778888777999999999999999999999999999999998 99999888876666
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++..+..+... +.+.+++..++.|++.+...+...+++.|.+|+++ |++..
T Consensus 289 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 339 (365)
T TIGR00900 289 LAILVVGLTPP-----------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVF 339 (365)
T ss_pred HHHHHHHhhch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 66655554410 15667788889999999999999999999999888 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVG 213 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g 213 (581)
++.+...++|..++|.++|++.+.+|
T Consensus 340 ~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 340 GAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999987654
No 172
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.06 E-value=2.1e-11 Score=132.27 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020 41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120 (581)
Q Consensus 41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 120 (581)
.+....++......-+++.++++.++.|++.+.+-++..+..++..++++|. -|-|.+-++.++..+|.+++++-+.
T Consensus 14 ~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf-- 90 (539)
T PF03137_consen 14 FQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHF-- 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHh--
Confidence 3366777777777788999999999999999999999999999999999986 6667778888999999998876433
Q ss_pred CCCCCCCCCC-----------ccccc-------------------cCCchhhHHHHHHHHHHHHHhccCcccchhhhccc
Q 008020 121 QLRPPPCQAT-----------DITKC-------------------QHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTD 170 (581)
Q Consensus 121 ~~~~~~~~~~-----------~~~~~-------------------~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~ 170 (581)
.-++|.-. +..-| +........+++++.++.|+|....++...+|+-|
T Consensus 91 --~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 91 --LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred --hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 22222100 00111 11112245788999999999999999999999999
Q ss_pred CCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc---------------------ccc-hhhHHHHHHHHHHHH
Q 008020 171 QFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD---------------------EVG-RSWGYGICSICMFTA 228 (581)
Q Consensus 171 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~---------------------~~g-~~~~f~i~~~~~~~~ 228 (581)
..++++ -+...|+++....+|..+|.++++.+.. +.| |...|.+.+++.++.
T Consensus 169 nv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 169 NVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999988 8888999999999999999888876532 123 777787777666665
Q ss_pred HHHHHHcccccccc
Q 008020 229 ILIFLSGTRRYRYK 242 (581)
Q Consensus 229 ~~~~~~~~~~~~~~ 242 (581)
.+.+++..++++..
T Consensus 243 aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 243 AIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------
T ss_pred HHHHHcCCccCCCc
Confidence 55555555544433
No 173
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.05 E-value=4e-09 Score=111.53 Aligned_cols=174 Identities=13% Similarity=0.171 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHH-HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDF-MGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
.++..++..++..........+.+.|+.+++|++..+.+.+.... .++..++.+++|++.||+ |||+.+..+.+...+
T Consensus 210 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l 288 (402)
T PRK11902 210 GAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAV 288 (402)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 344444544554444333334455677778999999999987665 456889999999999998 999988777766655
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHH----HHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISL----YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
..+........++ +.+.+++.. +..+++.+...+....++.+.+|.++ +
T Consensus 289 ~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~- 341 (402)
T PRK11902 289 SNLGYWVLAVTPK--------------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y- 341 (402)
T ss_pred HHHHHHHHHhcCC--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H-
Confidence 5443322111011 133344333 34555566667777777777776544 4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+++....++|..+++.++|.+.+..||+..|.+..++.+++..+...
T Consensus 342 ---~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 342 ---ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 34444456677666668999999999999999888777766555443
No 174
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.02 E-value=9.5e-09 Score=109.42 Aligned_cols=146 Identities=18% Similarity=0.100 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020 44 STMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR 123 (581)
Q Consensus 44 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (581)
..+.+..++|.|+.+ .|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..++.++.... +.
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~---~~-- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI---PQ-- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---cc--
Confidence 344566788888875 599999999988999999999999999999998 99999988887766655444322 11
Q ss_pred CCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHH
Q 008020 124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVT 203 (581)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 203 (581)
.....+.+..+..+.+..+..+..+.++.|.+|++. |++++++.+...++|+.++|.
T Consensus 319 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~ 375 (426)
T PRK12307 319 -----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSM 375 (426)
T ss_pred -----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHH
Confidence 011112122222222233344566778899999988 999999998889999999999
Q ss_pred HHHHhhcccchhhHHH
Q 008020 204 VLVYIQDEVGRSWGYG 219 (581)
Q Consensus 204 ~~~~l~~~~g~~~~f~ 219 (581)
+.|++.+..|+....+
T Consensus 376 ~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 376 AATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHcccHHHHHH
Confidence 9999999888665433
No 175
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.02 E-value=9.2e-09 Score=110.98 Aligned_cols=177 Identities=14% Similarity=0.010 Sum_probs=122.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH--------H
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTI--------A 100 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l--------~ 100 (581)
+.+|...+..++....++.+..++|.|+.+.+|++..+.+...+...++..++.+++|+++||+ ++|+.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence 4678888999999999999999999999999999999999999999999999999999999997 544321 1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHH
Q 008020 101 IFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 180 (581)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~ 180 (581)
.+......+..+...... . .+.....+...+.+.+.++..+.......|..|+ .
T Consensus 340 ~~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---- 393 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPYL-S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F---- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHHc-C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H----
Confidence 111111111111111100 0 0123333344444555555555555555566553 4
Q ss_pred hHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc---chhhHHHHHHHHHHHHHHHHHH
Q 008020 181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV---GRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 181 ~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
++.+.++.+...++|+.++|.+.|++.+.. +|+.+|.+.++..+++.+....
T Consensus 394 --~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 --LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 899999999999999999999999887643 3888888777666666554433
No 176
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.01 E-value=6.4e-09 Score=112.49 Aligned_cols=174 Identities=11% Similarity=0.034 Sum_probs=114.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-------HHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYR-------TIAIF 102 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-------~l~~~ 102 (581)
.+|.+.+..++.....+.+..++|.|+.+.+|++..+++.+.+.+.++..++.+++|+++||+ |||+ .+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~ 331 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV 331 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence 346666665555556667778899999888999999999999999999999999999999998 8762 11122
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhH
Q 008020 103 ATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ 182 (581)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (581)
.++..+..++.... .+.....+..++.+++.+...+...++..+..| +.
T Consensus 332 ~~l~~i~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------ 380 (476)
T PLN00028 332 QTLGGVFCIWLGRA------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------ 380 (476)
T ss_pred HHHHHHHHHHhccc------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence 22211111222111 113334444455555555445555556666544 45
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcc
Q 008020 183 MAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGT 236 (581)
Q Consensus 183 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 236 (581)
|+...++.+...++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 889999987777777777776644 22344699999988877777766655543
No 177
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.01 E-value=7.7e-09 Score=108.22 Aligned_cols=163 Identities=9% Similarity=-0.005 Sum_probs=118.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
..+...+...+....++....+.|.|+++.+|+++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 285 (385)
T TIGR00710 207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS 285 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 445555555566666777777788888889999999999999999999999999999999998 9999998887777777
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.+++......+. .....+.+...+.|++.+...+.......|..| ++ |+++.++
T Consensus 286 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 339 (385)
T TIGR00710 286 AVLLEITAILGL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASAL 339 (385)
T ss_pred HHHHHHHHHhcc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHH
Confidence 666554421110 123445556667888888888888888888776 45 8888998
Q ss_pred HHHHHH-hhHHHHHHHHHHhhcccchhhHHHH
Q 008020 190 FFFVIS-TGTLMAVTVLVYIQDEVGRSWGYGI 220 (581)
Q Consensus 190 ~~~~~~-~g~~i~~~~~~~l~~~~g~~~~f~i 220 (581)
.+.... +|...+|.+ +.+.+..+|...+..
T Consensus 340 ~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 340 FGTLRLVLGAIVGYLV-SLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHH-HhccccChHHHHHHH
Confidence 777665 455556554 455555555554443
No 178
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.00 E-value=5e-09 Score=113.95 Aligned_cols=154 Identities=9% Similarity=-0.009 Sum_probs=128.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.+.......++....+++...++|.|+++.+|+++.+++.......++..++.++.|++.||+ |||+.+..+.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4556666777777788888888999999999999999999999999999999999999999998 999999888888777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.+++...... .+.+...+..++.|+|.|...+.....+.+..|+++ ++.+.+
T Consensus 338 ~~~~l~~~~~~---------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~ 390 (495)
T PRK14995 338 SFYGLAMTDFS---------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGA 390 (495)
T ss_pred HHHHHHHhcCC---------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHH
Confidence 77665443110 124445667788899999988888888889899888 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhc
Q 008020 189 RFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
+++...++|..+|+.+.+.+.+
T Consensus 391 ~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 391 IETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 179
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.00 E-value=9.6e-09 Score=106.64 Aligned_cols=154 Identities=15% Similarity=-0.013 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+..+.+.+...+....++....++|.|+++ .|++..+.+.+.+...++..+++++.|+++||+.+||+.+.++.++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 345666666667777788888899999975 7999999999999999999999999999999983456666777777777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.+.+.+... .... ...++.|++.|...|...+.+.+..++++ +++...+
T Consensus 276 ~~~~~~~~~~------------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~ 325 (355)
T TIGR00896 276 GLCGLLFAPM------------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSA 325 (355)
T ss_pred HHHHHHHhhh------------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHH
Confidence 7666554411 1111 23467799999988887777766555432 1788888
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccc
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVG 213 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g 213 (581)
+.+...++|..++|.+.|++.++.|
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888999999999999988776
No 180
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.99 E-value=7.4e-09 Score=109.24 Aligned_cols=171 Identities=13% Similarity=0.044 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTM---HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
.++..+...++....+.....+.+.|+.+.+ +.+....+.+.+...+...++.++.|++.||+ |||+.+.++.++.
T Consensus 216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~ 294 (396)
T TIGR00882 216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM 294 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence 3444445555555555555556777876654 55666778888888888899999999999998 9999999988887
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.++..+...+. +.+.+++.+++.+++..........+..+..+++. +++.
T Consensus 295 ~l~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~ 344 (396)
T TIGR00882 295 SVRIIGSSFAT------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATI 344 (396)
T ss_pred HHHHHHHHhcC------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEe
Confidence 77776655442 25556777888888766555555556666667666 6666
Q ss_pred HHH-HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 187 FSR-FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 187 ~~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
.+. ++....+|..+++.++|++.+..||+..|.+.+++.++..++
T Consensus 345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 345 YLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred ehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 665 667889999999999999999999999998877665554443
No 181
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.99 E-value=1.6e-08 Score=106.13 Aligned_cols=172 Identities=10% Similarity=0.006 Sum_probs=118.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
..+......++.....+....++++|+.+.+|++..+.+.+.+...++..++.++.|+++||+ |+|+.+..+..+..++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~ 278 (382)
T PRK10091 200 APWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLA 278 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHH
Confidence 345555555555556666667778888888999999999999999999999999999999998 9999998888777777
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhh-hcccCCCCCChHHHhHHhhHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSG-FGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
.++...... +.+...+..++.++|.....+.... ...+..+++. ++.+.
T Consensus 279 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~- 328 (382)
T PRK10091 279 LLMLFFFGG-----------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAAG- 328 (382)
T ss_pred HHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHHH-
Confidence 655433211 1333444455555555444443333 3334333333 44433
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDE-VGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
.+...++|..+||.++|++.+. .+|+..+.+..+..++.+....
T Consensus 329 -~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 329 -GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred -HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 3556789999999999998885 6799998877666555544433
No 182
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.98 E-value=6e-09 Score=112.86 Aligned_cols=156 Identities=12% Similarity=0.085 Sum_probs=128.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++...+..++..+.+++...++|.|+++.+|++..+.+.......++..++.+++|++.||+ |||+.+.++..+.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 3456667777778888888889999999999999999999999999999999999999999998 999999998888877
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+..+..+... +. .+.+.+....++.|+|.+...+.......+..|+++ |+++.+
T Consensus 334 ~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~ 387 (485)
T TIGR00711 334 GFYWRAFTFT-PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSS 387 (485)
T ss_pred HHHHHhccCC-CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHH
Confidence 7776653211 11 124556666788899998887777777778888888 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcc
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDE 211 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~ 211 (581)
+.+...++|+.+|+.+.+.+.++
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887654
No 183
>TIGR00895 2A0115 benzoate transport.
Probab=98.98 E-value=5.1e-09 Score=109.79 Aligned_cols=147 Identities=12% Similarity=-0.019 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
..+......++....++.+..++| ++.+++|++..+.+...+...++..++.+++|+++||+ |||+.+..........
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 328 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA 328 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence 445555666677777777777887 66678899999999999999999999999999999998 9985544443333333
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.++.... . +...+++..++.|++.+...+...+++.|.+|++. |++++++
T Consensus 329 ~~~~~~~---~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 378 (398)
T TIGR00895 329 VLVGSTL---F---------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW 378 (398)
T ss_pred HHHHHHh---h---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence 3222212 1 24556777788899999999999999999999988 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHh
Q 008020 190 FFFVISTGTLMAVTVLVYI 208 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l 208 (581)
.+...++|..+||.++|++
T Consensus 379 ~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 379 AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999875
No 184
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.96 E-value=2.8e-08 Score=107.57 Aligned_cols=157 Identities=11% Similarity=-0.040 Sum_probs=110.6
Q ss_pred HHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008020 50 VNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQA 129 (581)
Q Consensus 50 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (581)
.+.|.+ .+++|.+.....+......+...++.+++|+++||+ |||++++.+.++.+++.+++......+.
T Consensus 292 ~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~-------- 361 (479)
T PRK10077 292 YYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA-------- 361 (479)
T ss_pred HHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc--------
Confidence 334443 456888877777777778888899999999999998 9999999999988888777654421010
Q ss_pred CccccccCCchhhHHHHHHHHHHHHHhccC-cccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHH-
Q 008020 130 TDITKCQHASGIQMGVLYISLYLIALGTGG-LKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVY- 207 (581)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~l~glg~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~- 207 (581)
.......+.++.+.+.+. ..|+...++.|.+|++. |++++++.+...++|..+++.+.+.
T Consensus 362 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 362 ------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred ------------ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 011223334444444443 34778899999999888 9999999988888888888655543
Q ss_pred -----hhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 208 -----IQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 208 -----l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+.+..+|+..|++.++..+++.+..++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 445778888888766655555444443
No 185
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.96 E-value=1.7e-08 Score=109.45 Aligned_cols=173 Identities=17% Similarity=0.106 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.+..++...++.++....+...+|.+.++.+|.+....|++.+++.++..++.++.+++.+|+ ++++.+..+.+...++
T Consensus 219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~ 297 (524)
T PF05977_consen 219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALA 297 (524)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHH
Confidence 334444444555555555666788888999999999999999999999999999999999998 9999988888888887
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.+.++++. +.+..++..++.|++.....+...+.+.+..|++. |||.+++
T Consensus 298 ~~~lal~~------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 298 LLLLALSP------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred HHHHhcch------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 77777662 26777788888899988888888899999999998 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
+......+..+|.++.|.+.+.+|-+..+.++++..++..++..
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877766555544433
No 186
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.96 E-value=5e-07 Score=90.91 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=102.4
Q ss_pred cccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccC
Q 008020 58 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQH 137 (581)
Q Consensus 58 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (581)
++.|++..|++.+..+....+.+..++.|.++||+ |||+..+...+++.++.+.-- + +
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~---~----------------- 119 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-S---S----------------- 119 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-c---c-----------------
Confidence 57899999999999999999999999999999998 999998888888887775432 2 2
Q ss_pred CchhhHHHHHHHHHHHHHhccCcccchhhhc-ccCCCCCChHHHhHHhhHHHHHH-HHHHhhHHHHHHHHHHhhcccch-
Q 008020 138 ASGIQMGVLYISLYLIALGTGGLKSSVSGFG-TDQFDEKDEKEKTQMAYFFSRFF-FVISTGTLMAVTVLVYIQDEVGR- 214 (581)
Q Consensus 138 ~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~l~~~~g~- 214 (581)
++..++++|++.|++.....++-.+.. .|.-....+.+ -.+.-++... ....+-.+++.+++-++.+..+.
T Consensus 120 ----~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 120 ----NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 388999999999999999988887765 33221111100 0233333222 12223334444455555555554
Q ss_pred -hhHHHHHHHHHHHHHHHHHH
Q 008020 215 -SWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 215 -~~~f~i~~~~~~~~~~~~~~ 234 (581)
..+|..+.++.+++.++...
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHh
Confidence 67888887777766655443
No 187
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.95 E-value=3.2e-08 Score=104.88 Aligned_cols=185 Identities=14% Similarity=0.060 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
..|.+.+.+++..-++.+...++|.|+++.+ +............+...+.++++|+++||+ |+||++.++.+...++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence 5788888888877777778779999988755 333333334455778889999999999998 9999999998877776
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCC-------------
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKD------------- 176 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~------------- 176 (581)
........ |. .+..+...+.+..+...++.|.-...+..++.+.+|+++
T Consensus 330 ~~~~~l~l--p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 330 SALLFLTL--PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHh--cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 65433331 21 011235556666655566667767777777777776410
Q ss_pred --hHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHc
Q 008020 177 --EKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 177 --~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
...+.+-+...|+......+|+++-|.+.|...+..| +...|+...+..+++.++.+..
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 0111236677788888888999999977777766544 7778887777777776665543
No 188
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.92 E-value=6.5e-08 Score=102.04 Aligned_cols=165 Identities=12% Similarity=-0.032 Sum_probs=118.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++......++.....++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+ .+..+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHH
Confidence 3455555555666666666666764544567899999999999999999999999999999996 544 43334333333
Q ss_pred H-HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 109 G-TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 109 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
. .++.... .+.+.+.+..++.|++.+...+...+++.+..|+ + +++..
T Consensus 294 ~~~~l~~~~------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~ 342 (394)
T PRK10213 294 SALVLTLWG------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAG 342 (394)
T ss_pred HHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHH
Confidence 3 3333222 1255666778888999998888888888888874 3 45556
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMF 226 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~ 226 (581)
+......++|..+||.++|++.+..|++..+...++..+
T Consensus 343 ~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 343 SIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 666667789999999999999999998888877665443
No 189
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.91 E-value=2.5e-08 Score=105.42 Aligned_cols=154 Identities=7% Similarity=0.003 Sum_probs=111.6
Q ss_pred HHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020 47 GIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP 126 (581)
Q Consensus 47 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (581)
....++|.|+++..+ ++.+.+.+.+...+....+..+.+++.||..+.++.+..+.++..++.+++....
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 345567888876655 6678888887777766655555567766543667777777777777776665542
Q ss_pred CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020 127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV 206 (581)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 206 (581)
+...+.+...+.++|.+...|...+++.+..|+++ |++.+++++...++|..+||.++|
T Consensus 296 ---------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 296 ---------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchH
Confidence 14455566677888888888899999999999998 999999999999999999999999
Q ss_pred Hhhccc---c-hhhHHHHHHHHHHHHHHH
Q 008020 207 YIQDEV---G-RSWGYGICSICMFTAILI 231 (581)
Q Consensus 207 ~l~~~~---g-~~~~f~i~~~~~~~~~~~ 231 (581)
++.+.. + ....|++..+..++..+.
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 355 WLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 998764 2 244555544444444333
No 190
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.91 E-value=1.7e-08 Score=102.70 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=142.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+.+..-++..++.+=+.-++...-..|-..++|++..+...+.....+..+++++++|+|+||+ |-|+++.+++++..+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence 4666677777777777778888888999999999999999999999999999999999999998 999999999988777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
..+...+.. ....+++.-++.|...|...+..-++.++++|+++ -+++++
T Consensus 331 ~~~~~~~~~------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFg 380 (438)
T COG2270 331 AALYLIFLE------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFG 380 (438)
T ss_pred HHHHHHHcc------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceee
Confidence 666554441 14446666778899999999999999999999999 899999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+++.....++.+||...+.+.+.+| -|..+..-.++..++++++..
T Consensus 381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 9999999999999999999887665 455554444444444444433
No 191
>PRK10133 L-fucose transporter; Provisional
Probab=98.90 E-value=4e-08 Score=105.11 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYL-GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
.++...+..++.....++...+++.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ |||+++..+..+..+
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~ 337 (438)
T PRK10133 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 344455556666677777778888896 567899999999999999999999999999999998 999999888777665
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.++..+. +. . ..+....+.|++.+...|...+...+.++++ .+.+.+
T Consensus 338 ~~~~~~~~---~~---------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~ 385 (438)
T PRK10133 338 LCLISAFA---GG---------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_pred HHHHHHHc---CC---------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchh
Confidence 55444332 11 1 1244566789999999999999999988753 344455
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILI 231 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~ 231 (581)
+... ..+|+.++|.+.|.+.+..| -+..|++..++.+.....
T Consensus 386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 4433 33678888888999988887 788888776665544433
No 192
>PRK10054 putative transporter; Provisional
Probab=98.90 E-value=2.3e-08 Score=105.47 Aligned_cols=174 Identities=11% Similarity=-0.056 Sum_probs=128.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGG--TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
|.++......++..+.+.....+++.|+.. +.+.+....+.+............++.|++.||+ ++|+.+..+..+.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 345556666666666655555566666643 3455566667777777777777778889999998 9999999888877
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.++..+..... .+.+.+.++..+.++|.+...|...+++.+..|++. |++.
T Consensus 285 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~ 335 (395)
T PRK10054 285 VIGLVGFIFSG-----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASY 335 (395)
T ss_pred HHHHHHHHHcc-----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceeh
Confidence 77776665431 124556677888999988888888889999999888 8888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
++..+ ...+|..+||.++|++.++.|....|++......++.++..
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 88654 56689999999999999999988888776555554444433
No 193
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.3e-06 Score=91.67 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHH
Q 008020 71 VTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISL 150 (581)
Q Consensus 71 ~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (581)
.++.+....+.+++++.+-|+. |.|+.+.++...+..-.+.+.+- +.+.++++-
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-------------------------N~y~~yfss 109 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-------------------------NSYYLYFSS 109 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-------------------------chHHHHHHH
Confidence 6777888889999999999998 99999999988776654444332 267789999
Q ss_pred HHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020 151 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL 205 (581)
Q Consensus 151 ~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 205 (581)
.+.|+|.+..+.-...++++...++. +.+..++.......+.++|..+.
T Consensus 110 allG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 110 ALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred HHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence 99999999999999999999999888 88888887777777777775443
No 194
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.89 E-value=3.1e-08 Score=119.05 Aligned_cols=163 Identities=11% Similarity=0.068 Sum_probs=130.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChh-hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSA-TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
+.++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++.+++.+++|+++||+ ++++++.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence 3455555555666666667778899999999999999 999999999999999999999999998 99998888887777
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.+++.+.. +.+.+++..++.|++.++..+...+++.+..|++. |++++
T Consensus 311 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~ 360 (1146)
T PRK08633 311 LSLFLLPTAP------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVL 360 (1146)
T ss_pred HHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhh
Confidence 7776665542 25667777888999999988889999999999998 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhc-ccchhhHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQD-EVGRSWGYGICS 222 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~ 222 (581)
++.+...++|..+++.+++.+.. .+++...|++.+
T Consensus 361 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~ 396 (1146)
T PRK08633 361 AANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIA 396 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999888877776643 234444555443
No 195
>PRK09848 glucuronide transporter; Provisional
Probab=98.89 E-value=2.3e-08 Score=107.40 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++...+..++....++......+.|+++.+|.+....+.......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4566677777777777777777777788888898776665555555677788999999999998 999999999988888
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh-HHhhHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT-QMAYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~ 187 (581)
+.++..+. +. .+.+.+++..++.++|.+...+...++.+|..|.++.+.+. +++..+
T Consensus 307 ~~~~~~~~---~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~ 364 (448)
T PRK09848 307 GYLLFFWV---SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTY 364 (448)
T ss_pred HHHHHHHc---Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHH
Confidence 77766543 11 23556677788899999999999999999998865422111 147788
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGR 214 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~ 214 (581)
+.+++...+|..+|+.+.+.+.+..||
T Consensus 365 ~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 365 SLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999999998887655544
No 196
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.89 E-value=2.7e-08 Score=108.50 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChhhhhh------------HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020 36 GIEICERLSTMGIAVNLVTYLGGTMHLPSATSAN------------IVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA 103 (581)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 103 (581)
...++..+.+|++..++|.+++ +.|++..+.+. ......++..++.+++++++||+ |||++++++.
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~ 372 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGF 372 (502)
T ss_pred HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHH
Confidence 3445556677888777888775 66776543221 12233445566788899999998 9999998888
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
.+..++..+..+...... . ...+....+....+..+..+..+.+.+|.+|.+. |
T Consensus 373 ~~~~~~~~~l~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R 426 (502)
T TIGR00887 373 FILTVLFFVLGFAYNHLS-------------------T-HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------R 426 (502)
T ss_pred HHHHHHHHHHHHHHHhcc-------------------h-hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------H
Confidence 776666655544311000 0 1111111111222222344566777899999999 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhcc----------cchhhHHHHHHHHHHHHHH
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQDE----------VGRSWGYGICSICMFTAIL 230 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~----------~g~~~~f~i~~~~~~~~~~ 230 (581)
+++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+
T Consensus 427 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988773 3344566655555444433
No 197
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.87 E-value=5.7e-09 Score=107.53 Aligned_cols=145 Identities=20% Similarity=0.162 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLP-SATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
.+|..+...++..+.++....++|.|+.+.+|++ ..+.+.+.+...+...++.++.|+++||+ |+|+..........+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLIL 285 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 3454566666666777788899999999999999 78999999999999999999999999998 998888777776666
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.+.+...... .+....++..++.|++.+...+...+++.|.+|+++ |+++.+
T Consensus 286 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g 338 (352)
T PF07690_consen 286 GALGLLLLPFS---------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFG 338 (352)
T ss_dssp HHHHHCCSHHH---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHH
T ss_pred HHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 66655444211 124556667788899999999999999999999998 999999
Q ss_pred HHHHHHHhhHHHHH
Q 008020 189 RFFFVISTGTLMAV 202 (581)
Q Consensus 189 ~~~~~~~~g~~i~~ 202 (581)
+.+...++|..+||
T Consensus 339 ~~~~~~~~~~~igP 352 (352)
T PF07690_consen 339 LFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999987
No 198
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.86 E-value=9.2e-08 Score=102.07 Aligned_cols=162 Identities=19% Similarity=0.131 Sum_probs=132.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.+..++...++..++........+.|.+..+|.+ ...+.+.....++..++.+++++++||+ |+|+++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 56777888888888888888888888888888877 5667778889999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHH-hHHhhHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK-TQMAYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~ 187 (581)
+.++..+... .+.+.+++..++.|++.+...+...++++|..+.++.+++ .+.|..+
T Consensus 303 ~~~~~~~~~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~ 360 (428)
T PF13347_consen 303 GFLLLFFLGP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYF 360 (428)
T ss_pred HHHHHHHHHh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHH
Confidence 8888777621 2378888999999999999999999999999986543222 1246777
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGR 214 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~ 214 (581)
+.+.....+|..+++.+.+.+.+..|+
T Consensus 361 s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 361 SVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 888889999999999988877554443
No 199
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.85 E-value=3.4e-08 Score=118.53 Aligned_cols=184 Identities=11% Similarity=-0.053 Sum_probs=133.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
+.++...+..++..+..+.+..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|+. ++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 4677777777778888888888999999999999999999999999999999999999999987 776666655555444
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+.+.+.+... ....++.+-. .........+.+.++++.++.|++.++..+...+++.+.+|++. ||++++
T Consensus 304 ~~~~l~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g 373 (1140)
T PRK06814 304 FGLDLAFASS-SVPAEPAQLK---SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIA 373 (1140)
T ss_pred HHHHHHhccc-cccccccccc---chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeH
Confidence 4443332100 0000000000 00000000124567778888999999999999999999999999 999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhhc-ccchhhHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQD-EVGRSWGYGICSI 223 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~~ 223 (581)
..+...++|..+++++.+.+.+ ..++...|++..+
T Consensus 374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999999988864 3456666554443
No 200
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.81 E-value=1.5e-07 Score=98.24 Aligned_cols=166 Identities=11% Similarity=-0.079 Sum_probs=111.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch---HHHHH-HHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRY---RTIAI-FAT 104 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr---~~l~~-~~~ 104 (581)
|.+|.+....++....+|++..|+|.|+++ .|++.. .+.......+...++ .++++||. .|| +.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence 567889999999999999999999999964 677754 455555555544444 47788876 543 33222 333
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+.+++..+..... +.....+...+.+++.....+..+++.+|.+|++. |+
T Consensus 266 ~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rg 315 (368)
T TIGR00903 266 LIAAFFLALAFEL------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HG 315 (368)
T ss_pred HHHHHHHHHHHcc------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cC
Confidence 3333333333221 12223344455566666666778899999999999 99
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIF 232 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 232 (581)
++.++.+...++|+.++|.+.+.+.. |....|.+.++..+++.+..
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887763 55666665555555544443
No 201
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.80 E-value=1.3e-07 Score=98.72 Aligned_cols=149 Identities=7% Similarity=-0.069 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
..+...+..++.....+.+..+.|.++.+.+|++..+.+.+.....++..++.++.|+++||+ |||+.+.++..+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 344455555556666666677777788888999999999999999999999999999999998 9999998888765543
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.+.+......+ ...+.+.++..+.+.+.+...+.....+.|..| +. ++++.+.
T Consensus 274 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 326 (377)
T PRK11102 274 GIWLVVSALLD--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSL 326 (377)
T ss_pred HHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHH
Confidence 33322221101 113334444445555555555666666777766 55 7888877
Q ss_pred HHHH-HHhhHHHHHHHHH
Q 008020 190 FFFV-ISTGTLMAVTVLV 206 (581)
Q Consensus 190 ~~~~-~~~g~~i~~~~~~ 206 (581)
.+.. ..+|..+++.+++
T Consensus 327 ~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 327 AGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5543 4567777776654
No 202
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.79 E-value=2.5e-07 Score=97.53 Aligned_cols=158 Identities=9% Similarity=-0.053 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020 41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120 (581)
Q Consensus 41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 120 (581)
...........++.|+++.+|.+..+.+.+.+...++..++.++.+++.||+ ++|+++..+... .+..++....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~---- 290 (393)
T PRK11195 217 FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ---- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH----
Confidence 3444455556677788888999999999999999999999999999999998 988888777533 3333333322
Q ss_pred CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM 200 (581)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 200 (581)
.+.+...+..++.|++.+...+...+.+.+..|++. + ++++.+..+...++|..+
T Consensus 291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-~----~g~~~a~~~~~~~~~~~~ 345 (393)
T PRK11195 291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-G----AGHSIAVQNFNENLAMLL 345 (393)
T ss_pred --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-c----chhHHHHHhHHHHHHHHH
Confidence 124555667778899988888888888887655432 1 688999999999999999
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020 201 AVTVLVYIQDEVGRSWGYGICSICMFTAIL 230 (581)
Q Consensus 201 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 230 (581)
+..+.+.+ +..|-+..+.+..+..++...
T Consensus 346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 346 MLGLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 99888865 557777777766555554443
No 203
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.77 E-value=6.2e-07 Score=93.60 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=101.3
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehh
Q 008020 374 LTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFY 453 (581)
Q Consensus 374 ~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (581)
....+..+.+++-++..+++.++++ .+.+..|+.+..+-++.++.+ .++|.
T Consensus 411 ~~a~~~~gEI~~~ffs~klI~kiGH----------v~v~~lgLa~~~~Rf~~~S~L-------------------~n~W~ 461 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKLIEKIGH----------VNVMYLGLACNVGRFLYYSYL-------------------QNPWM 461 (618)
T ss_pred hhhhhccchHHHHHHHHHHHHHhcc----------cceeeehhhHHHHHHHHHHHh-------------------cCchh
Confidence 4455566666666666666544433 233677888887777777765 36677
Q ss_pred hHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH-HHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchh
Q 008020 454 LIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL-TTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRL 532 (581)
Q Consensus 454 li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~ 532 (581)
+++.-++.|+..+..+.+.-+|+...+|+++|.+++|+.. .-..+|-.+|..+.|.+... .+.
T Consensus 462 vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~----------------fg~ 525 (618)
T KOG3762|consen 462 VLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER----------------FGA 525 (618)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee----------------ehh
Confidence 7777789999999999999999999999999999999998 45668888888888766422 222
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020 533 DCFYGLLAALSFINFGLFLLCASWYKR 559 (581)
Q Consensus 533 ~~~f~~~~~~~~i~~~~~~~~~~~~~~ 559 (581)
...|..+++.+++.++.+..+.+..++
T Consensus 526 ~ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 526 RTTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 445777777777777766666554433
No 204
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.76 E-value=7.9e-08 Score=99.77 Aligned_cols=145 Identities=15% Similarity=0.085 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFM-GTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
..+.+++..++..+.++....+++.|+++ +|++..+.+.+.++.. +...++.+++|+++||+ |||+.+..+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 36667777777888888999999999987 8999999998887665 67789999999999998 999998888877777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
+..+..+...... ++. .+..+.+.+....++.+++.+...+...+++.|.+|++. |++.++
T Consensus 288 ~~~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g 348 (356)
T TIGR00901 288 TNAGFVWLASNGH---------HDG----ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMA 348 (356)
T ss_pred HHHHHHHHHhcCc---------ccc----cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHH
Confidence 6654443211000 000 000124667777888899999999999999999999999 999999
Q ss_pred HHHHHHH
Q 008020 189 RFFFVIS 195 (581)
Q Consensus 189 ~~~~~~~ 195 (581)
+++...+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 9876554
No 205
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.74 E-value=6.7e-07 Score=89.38 Aligned_cols=163 Identities=15% Similarity=0.031 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
..|.+.+-.-+.++.+|.+..|+|.++. +.|+|..++|.+.+...+......+..-.+++|...+|+........+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 5788888888899999999999999988 679999999999999999999999999999998767888888888888888
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
..-+.+. |. +...+. .+++|+|.|+.+|....++.+..++.+. -++..++
T Consensus 288 ~~G~~~~---P~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgm 337 (395)
T COG2807 288 LVGLLLA---PG--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGM 337 (395)
T ss_pred HHHHHHh---hh--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHH
Confidence 8766665 21 122222 4789999999999999999998876541 5566667
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHH
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSI 223 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~ 223 (581)
.+-...+=..+||.+.|++.|..| |+.++..-..
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~ 372 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLAL 372 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHH
Confidence 666666666789999999988775 7776654433
No 206
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.74 E-value=3.6e-07 Score=98.87 Aligned_cols=165 Identities=14% Similarity=0.063 Sum_probs=117.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++.++...++.....+......+.|.+..++ +....+.+.+...++..++.+++++++||+ |+|+.+.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 566777777777777777666666655554444 455666677777788899999999999998 999999988877676
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh-HHhhHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT-QMAYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~ 187 (581)
+.+........+. .+.+.+++..++.+++.+...+...++++|..+.++-..+. +.|..+
T Consensus 309 ~~~~~~~~~~~~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~ 369 (473)
T PRK10429 309 SCGVLLLMGLAAP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY 369 (473)
T ss_pred HHHHHHHHhccCc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence 6655433211011 22556667777888999999999999999998754321111 134467
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGR 214 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~ 214 (581)
+...+...+|..+++.+.|++.+..|+
T Consensus 370 s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 370 SVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788888899999999999888665554
No 207
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.73 E-value=7e-08 Score=104.13 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=150.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc--chHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG--RYRTIAIFATVQ 106 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--rr~~l~~~~~~~ 106 (581)
+.++.......+..++++.-...++.|.. ..+++..+++.+.++..+...++.++.|+++|+. . ++.+..++++..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 57788888888899999988899999988 8999999999999999999999999999999997 6 334555666666
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.++...+++.. +++.+++..++.|+..|......+..+.|..+.++ ...+
T Consensus 376 gl~~~~~p~~~------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a 425 (509)
T KOG2504|consen 376 GLARLFLPFAT------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNA 425 (509)
T ss_pred HHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchH
Confidence 66666666652 37888999999999999998888889999999998 9999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcc
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGT 236 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~ 236 (581)
+|+......++.++||.++|++.+..| |...|+.++++.+++..+.+...
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999999888 88899988888777776655544
No 208
>PRK11043 putative transporter; Provisional
Probab=98.73 E-value=6.5e-07 Score=94.57 Aligned_cols=157 Identities=8% Similarity=-0.082 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG 111 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 111 (581)
+...+...+....++.+..++|.|++ +.|++..+.+.......++..++.++.+++.||+ |+|+.+........++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~ 283 (401)
T PRK11043 206 LGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVI 283 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence 33334444455556666777888876 5799999999888888888899999999999998 999987666655555444
Q ss_pred HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020 112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191 (581)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 191 (581)
.+........ .+...+.+...+.+++.+...+...+...+..| ++ ++++.++++
T Consensus 284 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~ 337 (401)
T PRK11043 284 AIWLASLLSH-------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQN 337 (401)
T ss_pred HHHHHHHhcc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHH
Confidence 3322211010 124445556677888888888888888777765 46 899999998
Q ss_pred HHHHhhHHHHHHHHHHhhcccchhh
Q 008020 192 FVISTGTLMAVTVLVYIQDEVGRSW 216 (581)
Q Consensus 192 ~~~~~g~~i~~~~~~~l~~~~g~~~ 216 (581)
.....++.+++.+.+.+.+......
T Consensus 338 ~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 338 TLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHHHHccCCChhHH
Confidence 8878888888888888876443333
No 209
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.72 E-value=9.7e-08 Score=101.83 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=119.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-------chHHH-H
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG-------RYRTI-A 100 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-------rr~~l-~ 100 (581)
+.+|.+.+..++.+.+++.+..++|.|+.+.+|++..+.|++.+...+...+..+++|.++||... +||.+ .
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 488999999999999999999999999999999999999999999999999999999999999822 11221 1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHH
Q 008020 101 IFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 180 (581)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~ 180 (581)
++....++..+.+++. +. .+.......+.++..+.|+..++. ..-..|.. ++.
T Consensus 338 i~~~~~ai~l~~l~~~---~~---------------~~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~a-pq~---- 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFT---SD---------------EHRLLAVILLTIAIGLSGFNISGF----YKNHQDIA-PQH---- 390 (466)
T ss_pred HHHHHHHHHHHeeeec---CC---------------CcchHHHHHHHHHHHHcccchhhh----Hhhhhhcc-chH----
Confidence 2222222222222222 21 000011122222222222222222 11122222 333
Q ss_pred hHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc---cchhhHHHHHHHHHHHHHHHHHH
Q 008020 181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDE---VGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 181 ~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~---~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
-+..+++.+...++.++++|.+.+.+... ..|+.+|++.++..++.-+.+.+
T Consensus 391 --a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 --AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 78889999999999999999999999842 36999999988877776655443
No 210
>TIGR00898 2A0119 cation transport protein.
Probab=98.71 E-value=1.8e-07 Score=102.01 Aligned_cols=132 Identities=12% Similarity=-0.063 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHH
Q 008020 72 TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLY 151 (581)
Q Consensus 72 ~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (581)
....+....+.++.++++||+ |||+.+.++.++..++.++..+... ...+...+..+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~ 418 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALAV 418 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHHH
Confidence 344566777888999999998 9999999998887777766655421 11233444445
Q ss_pred HHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 152 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 152 l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
+.+++.++..+..+.+..|.+|++. |++++++.+....+|++++|.+.+ +. ..++..++.+.+++.+++.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 419 LGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence 5566666677888899999999988 999999999999999999999988 43 345666776666555555444
Q ss_pred HHH
Q 008020 232 FLS 234 (581)
Q Consensus 232 ~~~ 234 (581)
..+
T Consensus 491 ~~~ 493 (505)
T TIGR00898 491 TLF 493 (505)
T ss_pred HHc
Confidence 333
No 211
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.68 E-value=5.1e-07 Score=95.08 Aligned_cols=79 Identities=15% Similarity=0.034 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 008020 37 IEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAIS 116 (581)
Q Consensus 37 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~ 116 (581)
...+..........+.|.|+++++|++..+.+.+.+...++..++.++.|++.||+ |||+.+.++..+..++.+++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 211 ITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455567788888999999999999999999999999999999998 99999999988888777766655
No 212
>PRK09669 putative symporter YagG; Provisional
Probab=98.64 E-value=4.5e-07 Score=97.28 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=108.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++.++...++............+.|.+..++. ....+.+.....+...++.+++++++||+ |+|+.+..+.+..++
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3455555555555555443333333344444443 33344555566778888899999999998 999999888766554
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh-HHhhHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT-QMAYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~ 187 (581)
+.+...+.. + .+.+.+++..++.+++.+...+...++++|..+.++.+++. +.+..+
T Consensus 307 ~~~~~~~~~--~--------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~ 364 (444)
T PRK09669 307 LSALIFFIP--P--------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVF 364 (444)
T ss_pred HHHHHHHhC--c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHH
Confidence 443332221 1 23556777788899999999999999999998754422221 135567
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGR 214 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~ 214 (581)
+.+.+...+|..+|+.++|.+.+..|+
T Consensus 365 s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 365 STNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788888999999999999988776665
No 213
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.62 E-value=1.8e-06 Score=90.83 Aligned_cols=178 Identities=11% Similarity=0.049 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020 31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT 110 (581)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 110 (581)
+...++..++...+.-....+...|+++.-+.+....+.+.+...++-.+.-.+.+++-.|+ |.|+++.++.+..++=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44455555666666666677788898865547777778777777778888888899999998 99999999998888876
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 190 (581)
.+.+.... |. .........+..++|+..|....+...++.+..|++. |+++.+++
T Consensus 288 ~l~a~~~~-~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~ 342 (400)
T PF03825_consen 288 LLYAYFSD-PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLY 342 (400)
T ss_pred HHHHHhcC-Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHH
Confidence 66665511 11 0012223444567999999999999999999999999 99999997
Q ss_pred HHH-HHhhHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHHH
Q 008020 191 FFV-ISTGTLMAVTVLVYIQDEVGRS------WGYGICSICMFTAILIFLS 234 (581)
Q Consensus 191 ~~~-~~~g~~i~~~~~~~l~~~~g~~------~~f~i~~~~~~~~~~~~~~ 234 (581)
... ..+|..+|..++|++.+++|-+ ..+.++++..++..+++.+
T Consensus 343 ~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 343 SALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 765 5799999999999999887644 3444555444444444333
No 214
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.61 E-value=7.4e-07 Score=94.50 Aligned_cols=166 Identities=9% Similarity=-0.016 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGT-MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
.++...+..++......+...+++.|+.+. .+.+....+...+.+.....++.+++|+++||+ ++|+++.++....++
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA 311 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 344445555665555556778899998653 244555555566777788899999999999998 999999888888777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 188 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (581)
..++..+.. . .. ......+.++..+..+|...+...+..+++. ......
T Consensus 312 ~~ll~~~~~---~---------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~ 360 (410)
T TIGR00885 312 LCLGSIFAG---G---------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAG 360 (410)
T ss_pred HHHHHHHcC---C---------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHH
Confidence 777666541 1 22 3455667788888888999999999998655 322322
Q ss_pred HHHHHHHhhHHHHHHHHHHhhccc------chhhHHHHHHHHHHHHH
Q 008020 189 RFFFVISTGTLMAVTVLVYIQDEV------GRSWGYGICSICMFTAI 229 (581)
Q Consensus 189 ~~~~~~~~g~~i~~~~~~~l~~~~------g~~~~f~i~~~~~~~~~ 229 (581)
+.. ..+|+.+.|.+.|++.|.. +.+..|+++.++.+...
T Consensus 361 l~~--~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (410)
T TIGR00885 361 LVM--AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIF 405 (410)
T ss_pred HHH--HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHHH
Confidence 222 2399999999999999954 47888888877655443
No 215
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.60 E-value=3.2e-07 Score=95.40 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.++.+.+..++.....+.+..+++.|+++.+|++..+.+.+.....+...++.+++|+++||+ |||+.+..+....+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 456666666666667778888999999999999999999999999999999999999999998 9998888777666666
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
..++..... + ..+...+.+...+.+++.|...+...+++.+..| ++ +++..++
T Consensus 305 ~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~ 357 (366)
T TIGR00886 305 AFLVVLGLV-S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGL 357 (366)
T ss_pred HHHHHhcCC-C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHH
Confidence 555544311 0 0024445555556666667766777788888876 35 8999998
Q ss_pred HHHHHHhh
Q 008020 190 FFFVISTG 197 (581)
Q Consensus 190 ~~~~~~~g 197 (581)
.+...++|
T Consensus 358 ~~~~~~~g 365 (366)
T TIGR00886 358 VGAIGNLG 365 (366)
T ss_pred HHHhccCC
Confidence 88777665
No 216
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.60 E-value=6.7e-07 Score=94.68 Aligned_cols=183 Identities=13% Similarity=0.106 Sum_probs=127.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
++...+.+...++.++.-..........+-++-|++..++.+++........+..+++.++.||+ |||+.++++.....
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~ 346 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA 346 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence 44667777777777777666666666666678899999999999999999999999999999998 99999999999888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHH-HHHHHHHHHHHhccC-cccchhhhcccCCCCCChHHHhHHhh
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMG-VLYISLYLIALGTGG-LKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~l~glg~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
+..+++.......+ ....-.. ..+++.++..+..+. ..|..+-+.+|.+|.+. |..
T Consensus 347 ~~~~~~~~~~~l~~----------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~a 404 (485)
T KOG0569|consen 347 VALLLMSIALFLSN----------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSA 404 (485)
T ss_pred HHHHHHHHHHHHHH----------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHH
Confidence 87776655532221 0000011 223344443333322 35788888999999999 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
++++-.....+..++-...-..+.+..|- ..|.+..+..++..+..+.
T Consensus 405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~ 452 (485)
T KOG0569|consen 405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR 452 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence 99998887777777776777777777764 4444444443444433333
No 217
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.58 E-value=2.4e-08 Score=102.43 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=118.9
Q ss_pred chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 008020 371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPIS 450 (581)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (581)
.++++..-.+...++.|+.+++.+++.|++. +..|..+..++.+..++.. .
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v----------~~vG~~iW~~Av~~~~fs~-------------------~ 120 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRV----------IAVGIFIWTLAVFASGFSN-------------------H 120 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCcceE----------EeeHHHHHHHHHHHHHHHH-------------------H
Confidence 3456667778888999999999888877754 6778888888877776652 4
Q ss_pred ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccc
Q 008020 451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKG 530 (581)
Q Consensus 451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~ 530 (581)
.|.+.+.-.+.|+|++...|...+++++.+|++.|++.+++++++..+|+.+|......+...+ +
T Consensus 121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------~--------- 185 (493)
T KOG1330|consen 121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------F--------- 185 (493)
T ss_pred HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc------c---------
Confidence 4677788899999999999999999999999999999999999999999999877766554322 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccccccccCC
Q 008020 531 RLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQ 564 (581)
Q Consensus 531 ~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 564 (581)
++.+.|++.++++++..++..++.++.+++..++
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 1356788888998888888888877666544433
No 218
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.58 E-value=2.1e-06 Score=87.88 Aligned_cols=174 Identities=15% Similarity=0.183 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008020 33 LSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGL 112 (581)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~ 112 (581)
..+...+...++++.--..+=+|-.+.+|++..|...++.....+..++....|++..|..++++.-.++....+++..+
T Consensus 212 ~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 212 RFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 34444555666777777778889999999999999999999999999999999999987668888888888888888877
Q ss_pred HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020 113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192 (581)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (581)
..++....+ .+.+..+.+++|+|.|.+....-+.+-|+..+++ .|.+++.+..
T Consensus 292 ii~a~~~~~---------------------~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGa 344 (403)
T PF03209_consen 292 IILAGPLGS---------------------PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGA 344 (403)
T ss_pred HHHHHhccc---------------------chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHH
Confidence 766644333 7889999999999999999888899999999888 8999999999
Q ss_pred HHHhhHHHHHHHHHHhhc----------ccchhhHHHHHHHHHHHHHHHHH
Q 008020 193 VISTGTLMAVTVLVYIQD----------EVGRSWGYGICSICMFTAILIFL 233 (581)
Q Consensus 193 ~~~~g~~i~~~~~~~l~~----------~~g~~~~f~i~~~~~~~~~~~~~ 233 (581)
...+...+|-.++|.+.| ..+|..+|.+-.++.++++.++.
T Consensus 345 aQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 345 AQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999898888887644 23577788877777666665543
No 219
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.57 E-value=1.4e-06 Score=90.56 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=138.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTM---HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
|.+|...+........++..-.-.+.|....+ +.+....|.+.+.-.+.-++.-.+..++-+|+ |.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 56777776666666666666666777776544 34455677788888888888999999999998 999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
.++=.+.+++++ +++.+.+.+.++++-.+.....+.-|+++.+|++- .++
T Consensus 299 ~~iRi~~~~~~~------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt 348 (412)
T PF01306_consen 299 MAIRIIGSGFAT------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SAT 348 (412)
T ss_dssp HHHHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHH
T ss_pred HHHHHHHHhhhc------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHH
Confidence 888888888773 28889999999999999999999999999999887 777
Q ss_pred HHHH-HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcc
Q 008020 186 FFSR-FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGT 236 (581)
Q Consensus 186 ~~~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 236 (581)
...+ ++....+|..+.+.++|++.|+.|++..|++.+...+...++..+..
T Consensus 349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence 7777 56778899999999999999999999998876666555555544433
No 220
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.57 E-value=1.1e-06 Score=87.54 Aligned_cols=170 Identities=13% Similarity=0.057 Sum_probs=115.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-----------------CCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGT--M-----------------HLPSATSANIVTDFMGTSFLLCLLGGFLA 89 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~G~la 89 (581)
|..+.+..+-|.+.+.+|+.+-......+.. . ..+....-.=..+..+.-+-+.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 4566777778888999998876544333211 1 11222222223445667778889999999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcc
Q 008020 90 DSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGT 169 (581)
Q Consensus 90 D~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~ 169 (581)
||+ |||+.+..+++++.+..+++..+.. ++ ....+++++|+++. +.+.+++.|.-
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~-rn-------------------~~tvllf~arafis----g~fqvaYvYtP 460 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-RN-------------------AYTVLLFTARAFIS----GAFQVAYVYTP 460 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC-cc-------------------hhHHHHHHHHHHHh----chheEEEEecC
Confidence 997 9999999999999988877765522 21 22456778887763 44567889999
Q ss_pred cCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 170 DQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 170 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
|.+|... |+.+.|.-.....+|+++.|+++ ...+ -.-..+..+...+.+++.+.
T Consensus 461 EVyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 461 EVYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIA 514 (528)
T ss_pred cccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHH
Confidence 9999998 99999998888999999999998 3222 22233333444444444433
No 221
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.51 E-value=5.1e-06 Score=87.50 Aligned_cols=144 Identities=13% Similarity=0.010 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020 44 STMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR 123 (581)
Q Consensus 44 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 123 (581)
.........+.|+++.+|++..+.+.+......+..++.++.+++.||+ +++... ......++.+..........
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~-- 296 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFGV-- 296 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhcc--
Confidence 3333344566788888999999999988888888888999999999998 733322 22222222222111100000
Q ss_pred CCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHH
Q 008020 124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVT 203 (581)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 203 (581)
.+.+.+++...+.++|.+...|...++..|.+| ++ ++...++.+...++|+.+++.
T Consensus 297 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~ 352 (394)
T PRK11652 297 -----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAAL 352 (394)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHH
Confidence 124556777888899999999999999989887 35 788888988888999999999
Q ss_pred HHHHhhcccchhh
Q 008020 204 VLVYIQDEVGRSW 216 (581)
Q Consensus 204 ~~~~l~~~~g~~~ 216 (581)
+++.+.....+..
T Consensus 353 ~~~~~~~~~~~~~ 365 (394)
T PRK11652 353 LSAMLPQTGQFSL 365 (394)
T ss_pred HHHHccCCchHHH
Confidence 9988866544443
No 222
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.50 E-value=3e-06 Score=80.75 Aligned_cols=93 Identities=24% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccc
Q 008020 54 TYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDIT 133 (581)
Q Consensus 54 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (581)
.|+-+++++...+.+.+..+......+...+.|.++||- |||+.-+.-.+ -.+++.+..
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTK---------------- 119 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITK---------------- 119 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhh----------------
Confidence 466778999999999999888888889999999999998 99996544433 334443331
Q ss_pred cccCCchhhHHHHHHHHHHHHHhccCcccchhhh-cccCC
Q 008020 134 KCQHASGIQMGVLYISLYLIALGTGGLKSSVSGF-GTDQF 172 (581)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~-~~~~~ 172 (581)
+.+++-+++++|++-|+..+...++..+. +.|..
T Consensus 120 -----hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 120 -----HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred -----cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 12348889999999999999888777664 45544
No 223
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.49 E-value=2.6e-06 Score=74.65 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHH
Q 008020 378 FVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQ 457 (581)
Q Consensus 378 ~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 457 (581)
..++.++..++.+++.++..+|+ .+..+..+..++.+..... .+.+.+...
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~----------~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 57 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKP----------VLLVGLFIFVLSTAMFALS-------------------SNITVLIIA 57 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhH----------HHHHHHHHHHHHHHHHHHh-------------------ccHHHHHHH
Confidence 34555666777777766554442 2455555555555544432 133445566
Q ss_pred HHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHH
Q 008020 458 FFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYG 537 (581)
Q Consensus 458 ~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~ 537 (581)
.++.+++.+...+..+.++.|..|++.|++.+++.+....++..+++.+.+.+.+. .++.+.|+
T Consensus 58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~ 121 (141)
T TIGR00880 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGWRAPFL 121 (141)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cchHHHHH
Confidence 78889999999999999999999999999999999999999999999998876421 12245566
Q ss_pred HHHHHHHHHHHHHHhhh
Q 008020 538 LLAALSFINFGLFLLCA 554 (581)
Q Consensus 538 ~~~~~~~i~~~~~~~~~ 554 (581)
+.+...++..+..++..
T Consensus 122 ~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 122 FLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 66666666666555543
No 224
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.35 E-value=1.6e-05 Score=84.38 Aligned_cols=170 Identities=12% Similarity=0.015 Sum_probs=112.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++...+..++....++.+...+|.|+++.+|++..+.++.......+..++..+.+.+.++. ++++.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 4566666777777777888888889999999999999999988778888888877777776554 444444443344444
Q ss_pred HHHHHHHhhc-CCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 109 GTGLLAISTK-QPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
+.++...... .+. ....++++.++.++|.+...|+.....-.. .+.. ++++.
T Consensus 297 g~~l~~~~~~~~~~--------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~------~G~a~ 349 (413)
T PRK15403 297 GLALLIVGNLLWPH--------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLP------KGTVS 349 (413)
T ss_pred HHHHHHHHHHHccc--------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCC------CcHHH
Confidence 4443332210 011 133356778888889888888887533221 2223 67777
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFT 227 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~ 227 (581)
+.++.....+..+++.+++++..+ +-.++|.+..++..+
T Consensus 350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 777777777888888888888664 456666555444333
No 225
>PRK11462 putative transporter; Provisional
Probab=98.33 E-value=3.4e-05 Score=83.15 Aligned_cols=161 Identities=10% Similarity=0.016 Sum_probs=97.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|....++...++..+...........|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+++..+..+..+
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAV 305 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3444444445555554444444444444444443 33445667778888899999999999998 999887655544433
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH--
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF-- 186 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~-- 186 (581)
..++..+. +. .....+++..++.|++.+...+...++++|..+.++- +.++|..+
T Consensus 306 ~~~~~~~~---~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~-~tG~r~~g~~ 362 (460)
T PRK11462 306 ISLAMFFV---PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEW-CNGKRLTGIS 362 (460)
T ss_pred HHHHHHHh---ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH-hcCCCchHHH
Confidence 33333222 11 1122344455666777777777778888988775432 22223333
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGR 214 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~ 214 (581)
++.......+|..+|+.++|++.+..|+
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677889999998888877554444
No 226
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.32 E-value=0.00034 Score=72.60 Aligned_cols=155 Identities=15% Similarity=0.053 Sum_probs=112.2
Q ss_pred HHHHHHHhccc-cCCChhhhh-hHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020 49 AVNLVTYLGGT-MHLPSATSA-NIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP 126 (581)
Q Consensus 49 ~~~l~~yl~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (581)
-+++.+|+.+. .|++..|.. -+.-...-......++...++|.. |.|++++++.+...+...++.+..+
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s-------- 93 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS-------- 93 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc--------
Confidence 36688899887 899999876 344555667777778888999997 9999999999888888877776632
Q ss_pred CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020 127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV 206 (581)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 206 (581)
....-+..++.|++.+. ..+..+++-...|+++ -.++.+....+.-+|..++.+++-
T Consensus 94 ----------------v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 94 ----------------VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred ----------------HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888776 4666777777777665 555666666666677777766665
Q ss_pred Hhhc--ccchhhHHHHHHHHHHHHHHHHHHc
Q 008020 207 YIQD--EVGRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 207 ~l~~--~~g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
.+.. ...+...++++.....+++++.++.
T Consensus 151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 151 LLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 5443 3346666677777666666665553
No 227
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=3.7e-06 Score=84.93 Aligned_cols=145 Identities=21% Similarity=0.172 Sum_probs=118.7
Q ss_pred chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 008020 371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPIS 450 (581)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (581)
.+++-....+..++..|+++..+++++.|.. +.+|+.++..+.+++++.. +
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ip----------m~~Gl~vmf~sTilFafg~-------------------s 158 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIP----------MVAGLFVMFLSTILFAFGN-------------------S 158 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccH----------HHHHHHHHHHHHHHHHHcc-------------------h
Confidence 3455566678888889999988887777643 8999999999998888762 4
Q ss_pred ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcch-hHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCcc
Q 008020 451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM-KTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINK 529 (581)
Q Consensus 451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~-rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~ 529 (581)
+..++++-.+.|+|.++.++...+++++.+|++. ||+++|+....-++|..+||.+.|.+++..++
T Consensus 159 y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk------------- 225 (464)
T KOG3764|consen 159 YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK------------- 225 (464)
T ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC-------------
Confidence 4577888899999999999999999999999776 69999999999999999999999988765432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020 530 GRLDCFYGLLAALSFINFGLFLLCASWYKRK 560 (581)
Q Consensus 530 ~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 560 (581)
..-|+++++++++...+-++..+.++.+
T Consensus 226 ---~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 226 ---SAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred ---cCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 3458999999999888877776554433
No 228
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.30 E-value=1.3e-05 Score=86.57 Aligned_cols=181 Identities=8% Similarity=-0.064 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChhh----hhhHHHHHHHHHHHHHHHHH----HHhhhcccchHHH--HHHH
Q 008020 34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSAT----SANIVTDFMGTSFLLCLLGG----FLADSFLGRYRTI--AIFA 103 (581)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~G----~laD~~~Grr~~l--~~~~ 103 (581)
+++...+....+.-..+.++.|..+..+.+... .+++.+...+...+.+++.. ++.||..+.+... .+|.
T Consensus 277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~ 356 (475)
T TIGR00924 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM 356 (475)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 333334444444444555777776654443222 55666666666666666644 4555521334433 6677
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
++..++.+..++..... +.....+.+.+.+..++.++|.....|...+++++..|++. |
T Consensus 357 ~l~~~~~~~~~~~~~~~---------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~ 415 (475)
T TIGR00924 357 LFCGASFLTFAASIWFA---------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------M 415 (475)
T ss_pred HHHHHHHHHHHHHHhhc---------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------H
Confidence 77777776665431100 01112457889999999999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
++.++.+.....+|..+++.+.....+..+|...|...++..++..++.+..
T Consensus 416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877666678877776665555444444443
No 229
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.30 E-value=1.6e-05 Score=77.35 Aligned_cols=158 Identities=13% Similarity=0.136 Sum_probs=107.8
Q ss_pred HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020 51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130 (581)
Q Consensus 51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (581)
...+.+++.+|+|..|.+.+..+..++..++ ++.|.+.|++ |.+.++.++.+...+|..++.++....
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~---------- 90 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR---------- 90 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc----------
Confidence 4456788999999999999999999998875 7779999999 999999999999999998877663211
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH-HHhh
Q 008020 131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL-VYIQ 209 (581)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~-~~l~ 209 (581)
.+....+.+++...+.+.|.+.+.+.+.....+.||+ + ||++.++.-....+++.+=..+. .+..
T Consensus 91 -------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 91 -------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred -------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 1113467777777777777666656655556688984 6 99999987776666664433333 3333
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHc
Q 008020 210 DEVGRSWGYGICSICMFTAILIFLSG 235 (581)
Q Consensus 210 ~~~g~~~~f~i~~~~~~~~~~~~~~~ 235 (581)
+. .-...+.++....++.++...+.
T Consensus 157 ~~-~~~fll~la~~~~~v~l~~~~~v 181 (250)
T PF06813_consen 157 DD-PSSFLLFLAVLPAVVCLVAMFFV 181 (250)
T ss_pred CC-hHHHHHHHHHHHHHHHHHHhhhe
Confidence 32 12223334444444444444443
No 230
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.29 E-value=2.3e-05 Score=77.80 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHhccccCCCh--hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020 43 LSTMGIAVNLVTYLGGTMHLPS--ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120 (581)
Q Consensus 43 ~~~~~~~~~l~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 120 (581)
.........++.+.. .++.+. .+.++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+..+
T Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (338)
T COG0477 16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-- 91 (338)
T ss_pred HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence 333333344444444 334344 4788899999999999999999999999 9998888887765555555555421
Q ss_pred CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHHHHHHH-HHHhhH
Q 008020 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFF-VISTGT 198 (581)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~~g~ 198 (581)
.....+.+.|.+.|++.+...+...+++.|.+|+ +. |+...+.... ...+|.
T Consensus 92 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 145 (338)
T COG0477 92 --------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGL 145 (338)
T ss_pred --------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHH
Confidence 2377888999999999999999999999999987 44 8888888777 577888
Q ss_pred HHHHHHHHHhhcc--cchhhHHHHHHHHH
Q 008020 199 LMAVTVLVYIQDE--VGRSWGYGICSICM 225 (581)
Q Consensus 199 ~i~~~~~~~l~~~--~g~~~~f~i~~~~~ 225 (581)
.++|.+++.+... .+|+..|.+.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 146 ALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888777766543 56888665554443
No 231
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.22 E-value=2.3e-05 Score=82.47 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.+.++++..++...+.-.....+..|.+-.++.+.............+..++.++..++++|+ |+|+++.++.++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence 4555566667777666666667777788888898888888888888888888899999999998 999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH-hhHH
Q 008020 109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM-AYFF 187 (581)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~ 187 (581)
+.++..+... .+..++++..++.++|.+...+..+++++|..+..+-+++.+| |-.+
T Consensus 315 ~~~~~~f~~~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~ 372 (467)
T COG2211 315 GYLLLYFTPA----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY 372 (467)
T ss_pred HHHHHHhhcC----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence 9998887731 3478888888999999999999999999999886553333323 3334
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhccc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEV 212 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~ 212 (581)
+.+....-+|..++..+.|++....
T Consensus 373 s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 373 SGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566666677777776766654433
No 232
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.16 E-value=0.00079 Score=69.86 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=50.4
Q ss_pred eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHH
Q 008020 450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSI 509 (581)
Q Consensus 450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~ 509 (581)
+.|.+++..+..|+..+..+...+..+.|..|++.|..++|.......+|..++..+.-.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555667778998899998889999999999999999999999999998888776543
No 233
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.15 E-value=4.2e-05 Score=77.85 Aligned_cols=163 Identities=16% Similarity=0.160 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.++.-.+..|+.--.--.+-.+++.|+.+..|++..+++...+.+..+..++..++-++-.|+ ...|.+.+..+...+-
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill 315 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 344455555555545555668899999988999999999999999999999999999999998 8888888777655554
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.+..++.. -..-..+..+.|+..+.++|+..+...+..+++.. .+ +-
T Consensus 316 ~~~~~l~~-------------------------g~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~---s~ 362 (422)
T COG0738 316 LLAVALIG-------------------------GVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VG---SG 362 (422)
T ss_pred HHHHHHhc-------------------------ChHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cc---ce
Confidence 44444441 12334556678899999999999999999995441 22 22
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccchhhHHH-HHHHHHH
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYG-ICSICMF 226 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~-i~~~~~~ 226 (581)
.-....+|+.+-|.+-|++.|+.|-...+. ++.+|.+
T Consensus 363 ~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l 400 (422)
T COG0738 363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL 400 (422)
T ss_pred eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 223455889999999999999998777666 4444433
No 234
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.06 E-value=2.9e-05 Score=60.95 Aligned_cols=70 Identities=21% Similarity=0.131 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
+-...++...+.-.+.++++.|++ +.|++..|.|.+.++..+...++++++|+++||+ +|++.++....+
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 334455666666678899999998 5899999999999999999999999999999999 888877665543
No 235
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.06 E-value=0.003 Score=66.71 Aligned_cols=189 Identities=10% Similarity=-0.050 Sum_probs=100.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|..+.+-..+++...+--++..-.+.|+.+-+.-+.--.+..-..-.+...+..+..|...||. .|.+++..+.+..-+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL 80 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence 4557788888888888888888888888866543333333333444666777778889999998 999998888764333
Q ss_pred H----HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHH-HHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 109 G----TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLI-ALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 109 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
+ ..++......+.. + ..+......+++...+. ++..=.......+.=-|+...=..+....+
T Consensus 81 sv~~s~~~~~~l~~~~~~-----------~--~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L 147 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPSS-----------S--SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL 147 (432)
T ss_pred HHHHHHHHHHHHHhCCcc-----------c--cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence 2 2222222111110 0 00011122222222222 221111111222222333221000001125
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
.+..+...-.=.+.-++||++.|.+....+......+.+...++.+..
T Consensus 148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 555555544455778999999999988778776655554444444443
No 236
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.04 E-value=1.3e-05 Score=86.44 Aligned_cols=146 Identities=8% Similarity=-0.158 Sum_probs=112.6
Q ss_pred ccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 008020 57 GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQ 136 (581)
Q Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (581)
++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.+.........+.
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~-------------- 344 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL-------------- 344 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc--------------
Confidence 457899999999999999999999999999999998 99999999998888877554322110000
Q ss_pred CCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccc---
Q 008020 137 HASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVG--- 213 (581)
Q Consensus 137 ~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g--- 213 (581)
.....+.+.+....++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.++.|
T Consensus 345 ~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~ 418 (468)
T TIGR00788 345 AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITC 418 (468)
T ss_pred ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 0000112344555667788888888888999999999999 9999999999999999999999999988777
Q ss_pred --hhhHHHHHHH
Q 008020 214 --RSWGYGICSI 223 (581)
Q Consensus 214 --~~~~f~i~~~ 223 (581)
++..+....+
T Consensus 419 ~~~~~~~~~i~i 430 (468)
T TIGR00788 419 DNSNNLWLLILG 430 (468)
T ss_pred ccccchHHHHHH
Confidence 6555543333
No 237
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.03 E-value=4.3e-05 Score=82.84 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhhhhhh-ccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHH
Q 008020 379 VAAILITLGAYDRLIIP-LLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQ 457 (581)
Q Consensus 379 ~~~~i~~~~l~~~~~~~-~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 457 (581)
.....+..++.+++.|+ +++|+ .+.+|.++..++.+.+++.. .....+.+.
T Consensus 60 ~~~~~~~~~~~G~laDr~~G~r~----------~~~~g~~~~~~g~~~~~~~~------------------~~~~ll~~~ 111 (489)
T PRK10207 60 AALVYGLISIGGYVGDHLLGTKR----------TIVLGAIVLAIGYFMTGMSL------------------LKPDLIFIA 111 (489)
T ss_pred HHHHHHHHhhHHHhhhhccchHH----------HHHHHHHHHHHHHHHHHHhc------------------cchhHHHHH
Confidence 33444555677777766 55553 37888888888877666531 111224456
Q ss_pred HHHHHHHHHHHhhhHHHhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020 458 FFLVGSGEGFMYTGQLDFFITQSPKG--MKTMSTGLFLTTLSLGFFFSSLLVSIVK 511 (581)
Q Consensus 458 ~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~~g~~~~~~i~ 511 (581)
.++.++|.++..|...+++.|++|++ .|+.+.+++++..++|..+|+.+.|.+.
T Consensus 112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999999999987 4588999999999999999999998875
No 238
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.02 E-value=0.00012 Score=79.63 Aligned_cols=147 Identities=12% Similarity=0.024 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--ccCCCh------hhhhhHHHHHHHHHHHHHHHH----HHHhhhcccchHHHHHHHHH
Q 008020 38 EICERLSTMGIAVNLVTYLGG--TMHLPS------ATSANIVTDFMGTSFLLCLLG----GFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 38 ~~~~~~~~~~~~~~l~~yl~~--~l~~~~------~~~~~~~~~~~~~~~~~~~~~----G~laD~~~Grr~~l~~~~~~ 105 (581)
.+.....+|.+...++.++.. ..+.+. ...++..+...+...+..++. +++.||+ +..+.+.++.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence 334455566666666655432 111111 113444455554455555554 6667776 777888899999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
..++.+..++...... .+...+.+.+....+++++|.++..|...+++.+..|++. |++
T Consensus 360 ~~l~f~~l~~~~~~~~---------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~ 418 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN---------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGF 418 (500)
T ss_pred HHHHHHHHHHHHHhcC---------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHH
Confidence 9998887766633111 0111335578889999999999999999999999999998 999
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 008020 186 FFSRFFFVISTGTLMAVTVLV 206 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~ 206 (581)
.++.+.....+|..++..+..
T Consensus 419 ~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 419 IMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999888777777766655554
No 239
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.00 E-value=5.8e-05 Score=81.13 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhhhhhhhc-cccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHH
Q 008020 378 FVAAILITLGAYDRLIIPL-LKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIP 456 (581)
Q Consensus 378 ~~~~~i~~~~l~~~~~~~~-~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 456 (581)
......+..++.+++.||+ ++|+ .+.+|.++..++.+.++... .+...+..
T Consensus 54 ~~~~~~l~~ligG~LaDRilGrrr----------~iliG~il~~lg~lll~~~~------------------~~~~~~~l 105 (493)
T PRK15462 54 YCSLVYVTPILGGFLADKVLGNRM----------AVMLGALLMAIGHVVLGASE------------------IHPSFLYL 105 (493)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHH----------HHHHHHHHHHHHHHHHHHhh------------------cchhHHHH
Confidence 3444455666777777776 4442 26778888777765554221 11112333
Q ss_pred HHHHHHHHHHHHhhhHHHhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhH
Q 008020 457 QFFLVGSGEGFMYTGQLDFFITQSPKG--MKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDC 534 (581)
Q Consensus 457 ~~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~ 534 (581)
...+..++.++..+...+++.|.+|++ .|+++.++++...++|+.++|.+.+.+.+. .+++.
T Consensus 106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~----------------~Gw~~ 169 (493)
T PRK15462 106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE----------------YSWAM 169 (493)
T ss_pred HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh----------------hChHH
Confidence 344555677777787888999999976 799999999999999999999999877421 12356
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 008020 535 FYGLLAALSFINFGLFLLCAS 555 (581)
Q Consensus 535 ~f~~~~~~~~i~~~~~~~~~~ 555 (581)
.|.+.++..+++++.+++..+
T Consensus 170 ~F~iaaigm~l~li~~~~~~~ 190 (493)
T PRK15462 170 GFGLAAVGMIAGLVIFLCGNR 190 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 677665555555555544433
No 240
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.98 E-value=0.00015 Score=77.65 Aligned_cols=208 Identities=8% Similarity=-0.069 Sum_probs=141.9
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChh------h----hhhHHHHHHHHHHHHHHHHHHHhhh
Q 008020 23 SKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGG-TMHLPSA------T----SANIVTDFMGTSFLLCLLGGFLADS 91 (581)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~------~----~~~~~~~~~~~~~~~~~~~G~laD~ 91 (581)
..+..+|..+.++..+++..++++.+..+...|+.+ .++-++. + ..+....+.+.+.+..++.-++.+|
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999999999999874 3443221 1 1233444555556666777888999
Q ss_pred cccc-hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhccc
Q 008020 92 FLGR-YRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTD 170 (581)
Q Consensus 92 ~~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~ 170 (581)
+ |+ |++..++.++.+++.....+.++.++-.+ ++++-+ ..-.++....+..++...+.|+..+.....-.+++++
T Consensus 332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~ 407 (477)
T TIGR01301 332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSR-YYDGDG--ESLPPPTGIKASALIVFAILGIPLAITYSIPFALASI 407 (477)
T ss_pred h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccc--cccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 8 85 66668888888888777665532111000 000000 0000111114667777788999999999999999999
Q ss_pred CCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHHHHHHHcccc
Q 008020 171 QFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVG--RSWGYGICSICMFTAILIFLSGTRR 238 (581)
Q Consensus 171 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~f~i~~~~~~~~~~~~~~~~~~ 238 (581)
..+++..+ .|..+|++|.+..+..++..+..|.+.+..| ..+.+.++++..+++.+..+...|+
T Consensus 408 ~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 408 RSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 99965411 6999999999999999999887777655554 5567778888887777666665554
No 241
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.94 E-value=6.7e-05 Score=83.87 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=91.0
Q ss_pred chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----------
Q 008020 371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVK--RLAVA----------- 437 (581)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~--~~~~~----------- 437 (581)
.+++.+...++..+..++++++.++..||+ .+.+|.++++++.++.++.+-. ++...
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~----------~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKLHRPI----------VIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhcccCcce----------EEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 345556666777777777777766554442 2677888888887776654211 00000
Q ss_pred -----hhcCC--C----------CCCc--eeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhH
Q 008020 438 -----KANGT--T----------GTTL--PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSL 498 (581)
Q Consensus 438 -----~~~~~--~----------~~~~--~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l 498 (581)
..+.. + +... ...+..+++.-++.|+|.+...+...+++.|.+|++.|+.+.|+++....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 00000 0 0000 113445667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 008020 499 GFFFSSLLVSIVKA 512 (581)
Q Consensus 499 g~~~g~~~~~~i~~ 512 (581)
|..+|+.+.+.+..
T Consensus 220 G~~lG~llgg~l~~ 233 (633)
T TIGR00805 220 GPAFGYLLGSFCLQ 233 (633)
T ss_pred hhHHHHHHHHHHHh
Confidence 99999999987764
No 242
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.94 E-value=5.6e-05 Score=81.16 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh----cccchHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADS----FLGRYRTIAIFATV 105 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grr~~l~~~~~~ 105 (581)
.+|...+..+|.....|++..++|.|+++..|++..+++.+...+.++..++.+++|+++|| . .+|........+
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCL 352 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 67999999999999999999999999998778999999999999999999999999999999 5 666666666554
Q ss_pred HHH-HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 106 QTF-GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+.+ |......... ......+.+....+.+...++...-..+....+. +|-
T Consensus 353 ~~~~g~~~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~ 403 (495)
T KOG2533|consen 353 YAIIGAISLLAAAV------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KAL 403 (495)
T ss_pred HHHHHHHHHHhhcc------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhH
Confidence 444 4343333311 1222222222333333344555555566665443 144
Q ss_pred hHHHHHHHHHHhhH-HHHHHHHHHhhcccchhhHHHH
Q 008020 185 YFFSRFFFVISTGT-LMAVTVLVYIQDEVGRSWGYGI 220 (581)
Q Consensus 185 ~~~~~~~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~i 220 (581)
...+....+.+.++ ..+++..+.....++|...|.+
T Consensus 404 ~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 404 TTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred HHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 44444444444444 4444445555666788888853
No 243
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.94 E-value=0.018 Score=61.50 Aligned_cols=167 Identities=10% Similarity=-0.002 Sum_probs=100.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----ChhhhhhHHHHHHHHHHHH-HHHHHHHhhhcccchHHHH
Q 008020 27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHL-----PSATSANIVTDFMGTSFLL-CLLGGFLADSFLGRYRTIA 100 (581)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~-----~~~~~~~~~~~~~~~~~~~-~~~~G~laD~~~Grr~~l~ 100 (581)
.+|.++...+..+|..+.++...+ +++.+.. +.....++.+...+...+. .++.+++++|+ +|++++.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~ 78 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence 345667777777777777776654 4555554 3356677777665555555 78889999998 9999988
Q ss_pred HHHHHHHHHHHHHHHhhcCCC---CCCCCCCCCccccccCCchh--------hHHHHHHHHHHHHHhccCccc-chhhhc
Q 008020 101 IFATVQTFGTGLLAISTKQPQ---LRPPPCQATDITKCQHASGI--------QMGVLYISLYLIALGTGGLKS-SVSGFG 168 (581)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~l~glg~g~~~~-~~~~~~ 168 (581)
+....+..-.+++++.-. |. +.|... -.......+.. ..|...+.-+...+-.....+ ..++++
T Consensus 79 ~~~~~F~~~f~lF~~vl~-p~~~~~~p~~~---~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fa 154 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIY-PLSDLLHPTAL---ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFA 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHh-cchhhcCCcHH---HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666665555554411 11 000000 00000000000 011111111112222222333 678899
Q ss_pred ccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhh
Q 008020 169 TDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQ 209 (581)
Q Consensus 169 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~ 209 (581)
.|.+..++ -.|.++++..+.|+|..+++.+..++.
T Consensus 155 ndi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 155 NQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 889999999999999999998888775
No 244
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.85 E-value=6.4e-05 Score=78.93 Aligned_cols=170 Identities=8% Similarity=-0.030 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Q 008020 38 EICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAIST 117 (581)
Q Consensus 38 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~ 117 (581)
.+...++.-.+..+|--++ ++++..+.-.|.+......+-++.-++.+++-.|+ |+-+++..++....+=.+..+...
T Consensus 380 av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~ 457 (618)
T KOG3762|consen 380 AVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ 457 (618)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc
Confidence 3344444444555554444 46666666667666666777777888889999998 999999999988888777766662
Q ss_pred cCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHH-HHh
Q 008020 118 KQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFV-IST 196 (581)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~ 196 (581)
++|..+..-+++|+-.+..+.++.+|+++..|++- |.++-++.... -.+
T Consensus 458 ------------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~Gl 507 (618)
T KOG3762|consen 458 ------------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGL 507 (618)
T ss_pred ------------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhccc
Confidence 27888888999999999999999999999999999 88888875554 568
Q ss_pred hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccc
Q 008020 197 GTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRY 239 (581)
Q Consensus 197 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~ 239 (581)
|-.+|.+++|.+.+.+|=+..|.+.++..++.++.+.......
T Consensus 508 G~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 508 GKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred CcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8899999999999999988888888877777666655554433
No 245
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.80 E-value=2.5e-07 Score=99.36 Aligned_cols=180 Identities=16% Similarity=0.083 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.....+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.||+ |||+.++.+....+++
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 445555555555555544555555556666676666 2223344456667777878999998 9999999998887777
Q ss_pred HHHHH-HhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhcc-CcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 110 TGLLA-ISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTG-GLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
.+.++ .....+. .+...+... .+...+...+.+ +..+....+..|.+|.+. |+++.
T Consensus 330 ~~~~~~~~~~~~~---------------~~~~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~ 387 (451)
T PF00083_consen 330 SLILGIIFFLGVS---------------SSSWWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGI 387 (451)
T ss_pred ccccccccccccc---------------ccccccccc-ceeeeeccccccccccccccccccccccccc------ccccc
Confidence 66554 1100010 000001111 111222212222 345677788899999999 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
++.+....+++.+++.+..++.+..+-...|.+...+.++..+..++
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence 99888888999999888888777665233444444443444433333
No 246
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00037 Score=72.05 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=121.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHHHHH-H
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYRTIAIFA-T 104 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~l~~~~-~ 104 (581)
+..+.+..+.+...+++-.=..++++|++ .+|.+.+..+.+-.+..+...+.+|+.|..+||+ +||||-++... .
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56677777788888888888889999987 7899999999999999999999999999999984 48887766554 4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCC----chhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHH
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHA----SGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 180 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~ 180 (581)
..+++..+...++.+.. ..++.. ..-....++++..|.=++.-.....+-++.+|+..+++
T Consensus 111 ~i~~~l~Lig~aaDig~-----------~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~---- 175 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGL-----------LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA---- 175 (498)
T ss_pred HHHHHHhhhhhHhhhhH-----------HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh----
Confidence 55666666665533221 111111 11335566777777777777778888899999998776
Q ss_pred hHHhh-HHHHHHHHHHhhHHHHHHHHHHh
Q 008020 181 TQMAY-FFSRFFFVISTGTLMAVTVLVYI 208 (581)
Q Consensus 181 ~~r~~-~~~~~~~~~~~g~~i~~~~~~~l 208 (581)
+.+ +.+++...+.+|+.+|..++++.
T Consensus 176 --~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 176 --KKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred --hhhccchhHHHHHHhcceeeeeccccc
Confidence 333 88999999999999998777654
No 247
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.77 E-value=0.0004 Score=75.96 Aligned_cols=154 Identities=15% Similarity=0.009 Sum_probs=92.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
..+|..........+.+++.+....+....+-+..|.+... .....+..+...++..++.++.||+ |||+.++.+...
T Consensus 291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 34455555666666666655444444444444566666444 4555566777778888889999999 999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
+.++.++++........ +.. .........+....+.......+..|..+.+.+|.+|.+. |++
T Consensus 369 m~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~ 431 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALY---------YPN--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSK 431 (513)
T ss_pred HHHHHHHHHHHHHHhcc---------CCC--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhh
Confidence 99998887766332110 000 0111112222222222333333445677778899999988 888
Q ss_pred HHHHHHHHHHhhH
Q 008020 186 FFSRFFFVISTGT 198 (581)
Q Consensus 186 ~~~~~~~~~~~g~ 198 (581)
+.++-.....+..
T Consensus 432 ~~s~~~~~n~~~~ 444 (513)
T KOG0254|consen 432 GASLAVAVNWLWN 444 (513)
T ss_pred hHHHHHHHHHHHH
Confidence 8877544433333
No 248
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.70 E-value=0.00067 Score=74.13 Aligned_cols=139 Identities=14% Similarity=0.194 Sum_probs=97.2
Q ss_pred chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 008020 371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPIS 450 (581)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (581)
..++...+.+...+..|+.+++.|-++||.. ++.|.++..+|.++.+.. .+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~----------~i~g~~l~vvG~Iv~atA-------------------~~ 130 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYF----------FIIGSLLGVVGSIVCATA-------------------QN 130 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcchHH----------HHHHHHHHHhHHHHhhcC-------------------Cc
Confidence 4556667778888888999999888887754 678888888888877644 24
Q ss_pred ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccc
Q 008020 451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKG 530 (581)
Q Consensus 451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~ 530 (581)
...++...++.|+|.+.... ....+.|..|.+.|+.+.++...........++.+...+. .+.+|
T Consensus 131 ~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~------~~~~W-------- 195 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA------AHSGW-------- 195 (599)
T ss_pred HHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc------cCCCc--------
Confidence 45678888999998776664 4556899999999988877776555444445555543321 11345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhc
Q 008020 531 RLDCFYGLLAALSFINFGLFLLCAS 555 (581)
Q Consensus 531 ~~~~~f~~~~~~~~i~~~~~~~~~~ 555 (581)
.|.|++.+++..++++..+++.+
T Consensus 196 --Rw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 196 --RWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred --chHHHHHHHHHHHHHHHHHHHhC
Confidence 67788888777777666554433
No 249
>PTZ00207 hypothetical protein; Provisional
Probab=97.58 E-value=0.0012 Score=72.46 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=86.8
Q ss_pred HHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHH
Q 008020 386 LGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGE 465 (581)
Q Consensus 386 ~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~ 465 (581)
.+..+++.|++++|. .+.++.++..++.++.++.... ....+.+.+.+..++.|+|.
T Consensus 78 ~lp~G~L~Dr~G~R~----------vllig~ll~~iG~ll~ala~~~-------------~i~~s~~~l~l~r~l~G~G~ 134 (591)
T PTZ00207 78 LLPYSFIYDYLGPRP----------IFVLSMTVFCLGTLLFALTFQE-------------VIEGSVVRLSVYNGLMTLGC 134 (591)
T ss_pred HHHHHHHHHHhCcHH----------HHHHHHHHHHHHHHHHHHHhcc-------------cccCcHHHHHHHHHHHHHHH
Confidence 334566666655553 3788888888888877764211 00135566677778899999
Q ss_pred HHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHH
Q 008020 466 GFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFI 545 (581)
Q Consensus 466 ~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i 545 (581)
+..++.....+.+.+| +.||+++|+......+|+.+.+.+...+.. .+ ...+|++.+++.++
T Consensus 135 ~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-------~~----------~~~~fl~l~vl~~v 196 (591)
T PTZ00207 135 MLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-------DN----------TSAYFFFLMSFALV 196 (591)
T ss_pred HHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh----------HHHHHHHHHHHHHH
Confidence 9888888888899887 679999999999999999765444433221 01 23456666766666
Q ss_pred HHHHHHhhhc
Q 008020 546 NFGLFLLCAS 555 (581)
Q Consensus 546 ~~~~~~~~~~ 555 (581)
..++.+.+.+
T Consensus 197 v~ll~~~~vr 206 (591)
T PTZ00207 197 VGILAIVFMR 206 (591)
T ss_pred HHHHHHhhee
Confidence 6555555444
No 250
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00016 Score=74.62 Aligned_cols=178 Identities=12% Similarity=0.045 Sum_probs=113.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhh--------HHHHHHHHHHH-HHHHHHHHhhhcccchHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSAN--------IVTDFMGTSFL-LCLLGGFLADSFLGRYRTI 99 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~--------~~~~~~~~~~~-~~~~~G~laD~~~Grr~~l 99 (581)
+.++......|....++|+...+...-++ ..++.+.+... ...+...++.+ +-.+..++.|++ |||+..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 34444555556666666666555444333 34444433322 22222223332 556667789998 999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHH-HHHHhccCcccchhhhcccCCCCCChH
Q 008020 100 AIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLY-LIALGTGGLKSSVSGFGTDQFDEKDEK 178 (581)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-l~glg~g~~~~~~~~~~~~~~~~~~~~ 178 (581)
+-+.+++.+..+..+..- ++ ...... +++.-. .+-++.-+-..+...+.+|.+|.+.
T Consensus 382 ~~GF~~~~i~~~~~~~~y------------------~~-~~~~~G-f~v~y~l~~ff~NFGPn~ttfivpaE~FParv-- 439 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPY------------------NQ-LENTIG-FVVLYSLTFFFGNFGPNATTFIVPAEIFPARV-- 439 (538)
T ss_pred HhhHHHHHHHHHHHcCCc------------------cc-ccccCc-eeehHHHHHHHHhcCCCceeEEeehhhchHHH--
Confidence 999988887776665441 11 111111 222222 2333333444455556699999988
Q ss_pred HHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc-----ccchhhHHHHHHHHHHHHHHHHHH
Q 008020 179 EKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD-----EVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~-----~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
|++.-++...+.-.|+++|.....++.+ ..|.+++|++...+.++.++.-++
T Consensus 440 ----R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 440 ----RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred ----hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 9999999999999999999999899988 778999999888887777766444
No 251
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.46 E-value=0.0029 Score=66.91 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHH
Q 008020 377 FFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIP 456 (581)
Q Consensus 377 ~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 456 (581)
....+-.+.....+++.|+++.|+ .+.++.+..++..++.++.. +...+.+
T Consensus 70 ~F~ysYal~qIp~GlLaDrlG~K~----------vL~l~~l~Wsl~t~L~~fa~-------------------Sl~~L~i 120 (511)
T TIGR00806 70 VLPYSHLAVLVPVFLLTDYLRYKP----------VLVLQALSFVCVWLLLLLGT-------------------SVWHMQL 120 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchH----------HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH
Confidence 334444555566666666655553 36677777777766666542 3456777
Q ss_pred HHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008020 457 QFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIV 510 (581)
Q Consensus 457 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i 510 (581)
.-+++|++++... ....++.+.+|++.|++++|+.+....+|..+++.+.+.+
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999 9999999999999999999999999999999999999874
No 252
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.39 E-value=0.0033 Score=56.60 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHH
Q 008020 68 ANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLY 147 (581)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 147 (581)
..-.++.+....+.+++...+.+++ |.|+.+.++.+.+++-...... | +.+.++
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~----~---------------------~~~~l~ 93 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY----P---------------------NSYTLY 93 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh----h---------------------hHHHHH
Confidence 3445566777777788888889987 9999999998877754443321 2 267789
Q ss_pred HHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020 148 ISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV 206 (581)
Q Consensus 148 ~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 206 (581)
.+-++.|+|.+..++....++.+..++++ |++-.+++....+.+.++|.++.-
T Consensus 94 ~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 94 PASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888877 888888887777777777765543
No 253
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.081 Score=53.83 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=94.4
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhh-----hcccchHH
Q 008020 24 KTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD-----SFLGRYRT 98 (581)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD-----~~~Grr~~ 98 (581)
.++..+.++.+++.+.....-+ +...-+|..++ .-|.|-++.+....++ -=+-.-+++..+.| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 4566678888888888876655 34445555555 5577777766543332 12234567788888 87 99986
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChH
Q 008020 99 IAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEK 178 (581)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~ 178 (581)
-++-. -+.+|.++..++...+. . .++....+. ...+....++.-+..+.--.++-...-.+..+++
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~-----~----~g~ng~~p~--v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~-- 166 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDR-----G----LGGNGGLPN--VVALTLLFLLLNFLAATQDIAVDGWALTMLSREN-- 166 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCc-----c----cccCCCCcc--hHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence 54322 22344444444432221 1 111111111 1122223345556666667777788888888888
Q ss_pred HHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020 179 EKTQMAYFFSRFFFVISTGTLMAVTVL 205 (581)
Q Consensus 179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~ 205 (581)
.+.+......+.+.|.++|..+.
T Consensus 167 ----lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 167 ----LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred ----cCchhHHHHHHHhhhHHhhccee
Confidence 88888888888888888876553
No 254
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.20 E-value=0.0027 Score=64.28 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-chHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYL-GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG-RYRTIAIFATVQT 107 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-rr~~l~~~~~~~~ 107 (581)
+.+..+....+...-.|...-+...++ .+.+|+++.|.|-+.+...+...+.++.-....||..| -+-.+..++.++.
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 455555555554444444444444444 67899999999999998888888888888888898733 3445555555555
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
-..++...+. .+..++.+..+-.+..+...++...++....|.++ ||.+.
T Consensus 341 P~~llls~~~------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~ 390 (451)
T KOG2615|consen 341 PAFLLLSLAR------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLN 390 (451)
T ss_pred HHHHHHhccc------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHH
Confidence 5555555442 25678888899999999999999999999999988 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhc
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
|+......++-.+||+++|.+..
T Consensus 391 Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 391 GIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHHHHHhhhhhhheeEE
Confidence 99999999999999999998765
No 255
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.19 E-value=0.013 Score=62.35 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=102.5
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee-e
Q 008020 372 ASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPI-S 450 (581)
Q Consensus 372 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 450 (581)
++......++..+..|..+.+-.|... .++| ++.|.+++.++.++...++.. +. .
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~--~k~P-------li~s~ii~~~g~llY~~l~~~---------------~~~~ 129 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGS--VKKP-------LIVSFLIAIIGNLLYLALAYV---------------PNGV 129 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCC--cccC-------HHHHHHHHHHHHHHHHHHHhc---------------ccch
Confidence 334455677778888877776432211 1232 889999999998888555432 22 3
Q ss_pred ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcC-CCCcc
Q 008020 451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVG-ENINK 529 (581)
Q Consensus 451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~-~~~~~ 529 (581)
.+++.+..++.|+|.+. ....=.|++...-.+.|.++++..+....+|..+||.+...+..+...+ ..|.+ -..|.
T Consensus 130 ~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~~~~~n~ 206 (488)
T KOG2325|consen 130 KYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILPGLIFNM 206 (488)
T ss_pred HHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcCcceEEe
Confidence 45667788888888544 3455567777777777888888888877888888887776654433221 23333 12333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 008020 530 GRLDCFYGLLAALSFINFGLFLLCASWYKRKK 561 (581)
Q Consensus 530 ~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~ 561 (581)
... .-|+.+.++++.+++.+++.+|..+..
T Consensus 207 YTa--p~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 207 YTA--PAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred cch--HHHHHHHHHHHHHHHHHhheeecccCc
Confidence 322 235667788888888888888755443
No 256
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.14 E-value=0.0041 Score=68.17 Aligned_cols=134 Identities=11% Similarity=0.067 Sum_probs=94.8
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehh
Q 008020 374 LTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFY 453 (581)
Q Consensus 374 ~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (581)
..++..++.++...+.+.+.|+++||. .+..++++..++-+..++. .+++.
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~----------~~~~~~~~~~i~~~~~a~a-------------------~~~~~ 173 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKP----------VLLVSLLLFIIFGILTAFA-------------------PNYWM 173 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHH----------HHHHHHHHHHHHHHHHHHh-------------------CcHHH
Confidence 344455566666666666666655553 2566666666665555543 35667
Q ss_pred hHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhh
Q 008020 454 LIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLD 533 (581)
Q Consensus 454 li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~ 533 (581)
+++.-++.|++.+......+.+..|..+++.|+.+..+ ......++.+++...+++. .+| .
T Consensus 174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~--------~~W----------r 234 (521)
T KOG0255|consen 174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT--------RDW----------R 234 (521)
T ss_pred HHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH--------hhH----------H
Confidence 78888999999999999999999999999999999999 8888888888888877664 244 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 008020 534 CFYGLLAALSFINFGLFLLCASW 556 (581)
Q Consensus 534 ~~f~~~~~~~~i~~~~~~~~~~~ 556 (581)
+.+++..+...+.+++ ++..+|
T Consensus 235 ~~~~~~~~~~~~~~~~-~~l~~E 256 (521)
T KOG0255|consen 235 WLFWIISIPSGLFLLL-WFLPPE 256 (521)
T ss_pred HHHHHHHHHHHHHHHH-HHccCc
Confidence 6677766666655554 444333
No 257
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.09 E-value=0.0041 Score=49.43 Aligned_cols=73 Identities=11% Similarity=0.047 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Q 008020 43 LSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAIST 117 (581)
Q Consensus 43 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~ 117 (581)
++-+.+.+.+| .++++.++|.++.+++.+..++++.++.+...++.++. .+++.+..+++...+..+.+++.+
T Consensus 6 igRFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 6 IGRFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hHHHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566554 67889999999999999999999999999999999987 888999999999999888888763
No 258
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.86 E-value=0.0066 Score=64.85 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=115.9
Q ss_pred CCcchhHHHHHHHHHHHHHHH-HHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHH-HHhhhcccchHHHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTM-GIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGG-FLADSFLGRYRTIAIFA 103 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G-~laD~~~Grr~~l~~~~ 103 (581)
++.|..+.++...+.....-. +..-.+..|+...++++..+.+...+.......++.++.. .+.-. +|-|+++..|+
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl 315 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGL 315 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHH
Confidence 334444554444444433333 2222456788999999999999999999999999998888 45555 49999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
+...+...+.+++.. .|+.+....+.++ .+...|...++.+.+.++++ +
T Consensus 316 ~~~~~~~~~~af~~~------------------------~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~ 364 (463)
T KOG2816|consen 316 LSEFLQLLLFAFATE------------------------TWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------Q 364 (463)
T ss_pred HHHHHHHHHHHHhcc------------------------chhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------c
Confidence 999999999988832 5666666666554 46677999999999999999 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYI 208 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l 208 (581)
|+.+++......+..+++|.+-+.+
T Consensus 365 g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 365 GKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred cchhhHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999998877655
No 259
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.85 E-value=0.023 Score=60.08 Aligned_cols=154 Identities=14% Similarity=0.017 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.++...+...+-.++..+.-..+..|+... |++....|..-+...+....+.....++-+|+ |..|.=.+++....+.
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~ 336 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVC 336 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHH
Confidence 455555555566666666667788999866 99999999999999999999999999999998 9999888888877776
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
..++..+...+. +|+ +..+...++.+.++--+|.=++--+..-++.|..|+++ |+...+.
T Consensus 337 L~~~v~~~~~~~---~~~-----------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gv 396 (432)
T PF06963_consen 337 LALCVVSFWAPG---SPF-----------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGV 396 (432)
T ss_pred HHHHHHHHhcCC---CCc-----------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHH
Confidence 666655533222 000 12346677777777777877788889999999999998 9999999
Q ss_pred HHHHHHhhHHHHHHHH
Q 008020 190 FFFVISTGTLMAVTVL 205 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~ 205 (581)
.+...++--++...++
T Consensus 397 q~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 397 QNSLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988888888876554
No 260
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0024 Score=67.19 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=99.4
Q ss_pred HHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHH
Q 008020 385 TLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSG 464 (581)
Q Consensus 385 ~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~ 464 (581)
...+.+++.||+..++ +.+..|.+++.+|.++++... ..+...+.+.+++.++|
T Consensus 77 t~i~GG~laDr~LG~~---------~tI~lGail~~iGh~~L~~~~-----------------~~~~~gl~i~L~~I~iG 130 (498)
T COG3104 77 TPIIGGWLADRVLGTR---------RTIVLGAILMAIGHLVLAISS-----------------VSGPGGLYIGLALIIVG 130 (498)
T ss_pred HHHHHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHhccc-----------------cccccHHHHHHHHHHhc
Confidence 3344455555544432 338889999999998887541 02344567778888899
Q ss_pred HHHHhhhHHHhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHH
Q 008020 465 EGFMYTGQLDFFITQSPKG--MKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAAL 542 (581)
Q Consensus 465 ~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~ 542 (581)
.++.=|...+++.|++|++ .|..+.+++.+.-++|+.+++.+.+.+... .+++..|.+.++-
T Consensus 131 ~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~----------------~g~~~gF~~aavG 194 (498)
T COG3104 131 TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN----------------YGWHVGFGLAAVG 194 (498)
T ss_pred cccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHH
Confidence 9999999999999999953 477788888899999999999999877421 2246667777777
Q ss_pred HHHHHHHHHhhhcccccccc
Q 008020 543 SFINFGLFLLCASWYKRKKA 562 (581)
Q Consensus 543 ~~i~~~~~~~~~~~~~~~~~ 562 (581)
+.++++.+++..++.+....
T Consensus 195 m~~gl~~f~~~~r~~~~~~~ 214 (498)
T COG3104 195 MIIGLVIFLLGRRHVKGIGG 214 (498)
T ss_pred HHHHHHHHHHccchhcCCCC
Confidence 88888888887766665443
No 261
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.72 E-value=0.017 Score=60.02 Aligned_cols=157 Identities=11% Similarity=-0.058 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.+.++++..-.....+++....+-.- ...-|++...+|.+.....+++.++.+++|.++||.-+-|.++++......++
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 44555555555544555554444322 23457777889999999999999999999999999844456666666666666
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
...+...+..+ ...+.++....+.|....+..|.-.-+..|..-+.. =+.-.|.
T Consensus 346 ~~~l~~~t~~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGl 399 (480)
T KOG2563|consen 346 TLMLLTCTLFL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGL 399 (480)
T ss_pred HHHHHHhhccC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------Cccccee
Confidence 43332222211 124556666777788778888888888777654443 2333455
Q ss_pred HHHHHHhhHHHHHHHHHHhhcccc
Q 008020 190 FFFVISTGTLMAVTVLVYIQDEVG 213 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~~~g 213 (581)
.+...++-+++=.++-+...+..+
T Consensus 400 l~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 400 LNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred EEeehhHHHHHHHHHHHHHhhccC
Confidence 444444444444445555555544
No 262
>PRK03612 spermidine synthase; Provisional
Probab=96.35 E-value=0.14 Score=55.80 Aligned_cols=172 Identities=13% Similarity=0.055 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH---H
Q 008020 34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG---T 110 (581)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~---~ 110 (581)
+....+...++...+-....-.+...+|-+..+.+.+++++.++..+|..++|+++++. -|+.. .+-..+..++ .
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~-~~e~~i~l~~~~~~ 96 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFV-AVELLLALLGGLSA 96 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH-HHHHHHHHHHHHHH
Confidence 34444455555555555555555666788888999999999999999999988887543 23322 2211111111 1
Q ss_pred HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020 111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190 (581)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 190 (581)
.+........ ......++...++.++-.|+..|....+..+... ++ -++..+..
T Consensus 97 ~ll~~~~~~~-------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~l 150 (521)
T PRK03612 97 LILYAAFAFQ-------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATV 150 (521)
T ss_pred HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhh
Confidence 1111110000 0011223334445667777777777666654322 12 34556777
Q ss_pred HHHHHhhHHHHHHHHHHhh-cccch-hhHHHHHHHHHHHHHHHHH
Q 008020 191 FFVISTGTLMAVTVLVYIQ-DEVGR-SWGYGICSICMFTAILIFL 233 (581)
Q Consensus 191 ~~~~~~g~~i~~~~~~~l~-~~~g~-~~~f~i~~~~~~~~~~~~~ 233 (581)
+....+|+++|.++.+++. ...|- +..+.++.+..+++++..+
T Consensus 151 y~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 151 LAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred HhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999888887654 35663 4445555544444544433
No 263
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.25 E-value=0.027 Score=63.00 Aligned_cols=95 Identities=22% Similarity=0.421 Sum_probs=73.8
Q ss_pred CCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCc
Q 008020 444 GTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWV 523 (581)
Q Consensus 444 ~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~ 523 (581)
+.+..++.+|.++++++.+.+|.+...+..++..+++|++|++..++++.....+|+.+...+...-.
T Consensus 558 ~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~------------ 625 (654)
T TIGR00926 558 VSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFEN------------ 625 (654)
T ss_pred cCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------
Confidence 45567888999999999999999999999999999999999999999999999999999877765311
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 008020 524 GENINKGRLDCFYGLLAALSFINFGLFLLCAS 555 (581)
Q Consensus 524 ~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~ 555 (581)
.. .-..-|..++++.++-.+++..+.+
T Consensus 626 ---~~--~~~~~~~~~~~~~~~~~~~f~~~a~ 652 (654)
T TIGR00926 626 ---FS--VQAAEFFLFASLMLVVMAIFSILAY 652 (654)
T ss_pred ---Ch--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 1123456666666666665555543
No 264
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=95.87 E-value=0.05 Score=56.84 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcc---hhHH
Q 008020 411 LIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKG---MKTM 487 (581)
Q Consensus 411 ~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~---~rg~ 487 (581)
.+.+|.++..+|.+++....... . .+...+...+.+.+.+.++|.++.=|....+..++++++ .|.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~----~------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~ 72 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPP----S------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDS 72 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSS----S------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcc----h------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhh
Confidence 36778888888887765542210 0 000223456777888899999999999999999999976 4666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020 488 STGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRK 560 (581)
Q Consensus 488 ~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 560 (581)
+...+....++|..++..+.+++.+ ..++...|.+.++..+++.++++...++++++
T Consensus 73 ~F~~fY~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 73 FFNWFYWGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hHHHHHHHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 7777888999999999888776642 12345667887888888888777776666655
No 265
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.67 E-value=0.002 Score=70.51 Aligned_cols=179 Identities=15% Similarity=0.095 Sum_probs=2.9
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHh-hc------
Q 008020 372 ASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEV--KRL--AVAK-AN------ 440 (581)
Q Consensus 372 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~--~~~--~~~~-~~------ 440 (581)
+.+.+.+-++.++...++.++. +|. ++.+.+.+|.++++++.+++++-+- ..+ .... .+
T Consensus 41 G~i~s~~di~~~~~~~~vsy~g----~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSYFG----GRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hhc------CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 4444555566666666665552 331 2345588899999888876654211 101 0000 00
Q ss_pred ----------C--C------C-CCCc-eeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHH
Q 008020 441 ----------G--T------T-GTTL-PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGF 500 (581)
Q Consensus 441 ----------~--~------~-~~~~-~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~ 500 (581)
. . + +... ...+..++++.++.|+|..-.++...+|+.|.++++.-+.+.|+......+|.
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 0 0 0 0111 12235566778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCC-----CCcCCCCccchhhH-HHHHHHHHHHHHHHHHHhhhcccccc
Q 008020 501 FFSSLLVSIVKAATGSNGKH-----GWVGENINKGRLDC-FYGLLAALSFINFGLFLLCASWYKRK 560 (581)
Q Consensus 501 ~~g~~~~~~i~~~~~~~~~~-----~w~~~~~~~~~~~~-~f~~~~~~~~i~~~~~~~~~~~~~~~ 560 (581)
.+|-.+.+...+........ +--|++-..-+.+| -|++.+++.++..+.+..+-|+.++.
T Consensus 191 a~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 191 ALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 99988887655432211100 00000000011123 34555666777777777666655544
No 266
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=95.62 E-value=3.8 Score=43.55 Aligned_cols=170 Identities=11% Similarity=-0.009 Sum_probs=96.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMH---LPSATSANIVTDFMG-TSFLLCLLGGFLADSFLGRYRTIA 100 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~ 100 (581)
+..++.+..+.+..+|..+.+..... +.+.+. .++.....+-+..-+ ++.+..++-+++.++. .|.+++.
T Consensus 23 r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~ 96 (509)
T COG3202 23 RYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY 96 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence 34566666677777777666554432 334433 344556666666666 6667788889999998 9999888
Q ss_pred HHHHHHHHHHHHHHHhhcCCC---CCCCCCCCCccccccCCch-h--------hHHHHHHHHHHHHHhccCcc-cchhhh
Q 008020 101 IFATVQTFGTGLLAISTKQPQ---LRPPPCQATDITKCQHASG-I--------QMGVLYISLYLIALGTGGLK-SSVSGF 167 (581)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~--------~~~~l~~~~~l~glg~g~~~-~~~~~~ 167 (581)
.-...+....+++++.-. |. +.|.|+..- ..+..-+ . +.|..-+.-+..-+=..... -.-+.+
T Consensus 97 ~~~~~F~~fF~LFa~Vi~-P~~~~~hp~~~~~~---~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~f 172 (509)
T COG3202 97 IILGFFLGFFALFAFVIY-PYKDILHPDPEFSR---DLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQF 172 (509)
T ss_pred HHHHHHHHHHHHHHHHHh-ccccccCCCHHHHH---HHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666666665521 11 000000000 0000000 0 00111111111111111111 144566
Q ss_pred cccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020 168 GTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 168 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
..|....++ -.|.++.++...|++..++..+..++.+
T Consensus 173 aNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 173 ANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 778877777 8889999999999999999888888765
No 267
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=95.54 E-value=0.14 Score=49.90 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHH
Q 008020 408 NLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTM 487 (581)
Q Consensus 408 ~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~ 487 (581)
+...+.+|.+...+++..+....+++ -...+.|.+.+...+.+.+....++....-..+.+|+ .||+
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~~------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~ 131 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSGR------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT 131 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence 33446788888888887665553321 0123556666666667777777777777777788985 6999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 008020 488 STGLFLTTLSLGFFFSSLLVSIV 510 (581)
Q Consensus 488 ~~gi~~~~~~lg~~~g~~~~~~i 510 (581)
+.|+.-....+++.+-+.+...+
T Consensus 132 vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 132 VVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred eehhhhHHHHhHHHHHHHHHHHH
Confidence 99999999998888776665443
No 268
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.42 E-value=0.064 Score=59.63 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcC-CCCc--
Q 008020 452 FYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVG-ENIN-- 528 (581)
Q Consensus 452 ~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~-~~~~-- 528 (581)
..++.+.++.|+|..-.+|...+|+.|.+.++.-+.+.|+......+|.++|-.+.++...+..... .. ..++
T Consensus 238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~----~~~~~it~~ 313 (735)
T KOG3626|consen 238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG----LSPIGITPT 313 (735)
T ss_pred HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc----cCCCCCCCC
Confidence 3566678899999999999999999999999999999999999999999999999888765443220 11 0111
Q ss_pred cc---hhhH-HHHHHHHHHHHHHHHHHhhhcccccc
Q 008020 529 KG---RLDC-FYGLLAALSFINFGLFLLCASWYKRK 560 (581)
Q Consensus 529 ~~---~~~~-~f~~~~~~~~i~~~~~~~~~~~~~~~ 560 (581)
+. +.+| -|++.+.+.++..+.++++-++.++.
T Consensus 314 DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 314 DPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 11 2223 35556677777777777776655543
No 269
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=94.85 E-value=0.33 Score=43.72 Aligned_cols=61 Identities=21% Similarity=0.433 Sum_probs=53.0
Q ss_pred eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008020 450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIV 510 (581)
Q Consensus 450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i 510 (581)
+.+.+++.-++.|++.+..++..-.++.+...++.+++.+|++......+..+|..+.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888999999999999999999999999999999999999998888887765443
No 270
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=94.69 E-value=0.2 Score=53.49 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCc--chhHHHH
Q 008020 412 IAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPK--GMKTMST 489 (581)
Q Consensus 412 l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~--~~rg~~~ 489 (581)
+.++.++..++.+.++..... ..+.......+++..+|..+.+...-+.+.|...+ +.||..+
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~---------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lq 126 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPAS---------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQ 126 (433)
T ss_pred HHHHHHHHHHHHHHHHhcccc---------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHH
Confidence 566666665555555544211 12333445566778889999998888888888742 2378889
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020 490 GLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASW 556 (581)
Q Consensus 490 gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~ 556 (581)
+..+.++.+|+.++..++|.+.+. .+....|.+.+.+..+..+..++..+|
T Consensus 127 S~~~~~~~~G~lv~~~l~G~l~~~----------------~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 127 SFVWGVRSVGSLVGSLLSGPLLDS----------------FGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhc----------------CCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999888766421 112344666666666666666666555
No 271
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=94.19 E-value=10 Score=41.12 Aligned_cols=173 Identities=12% Similarity=-0.001 Sum_probs=91.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM---HLPSATSANIVTDFMG-TSFLLCLLGGFLADSFLGRYRTIAI 101 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~~ 101 (581)
..++.++.+.+..+|..+.+..... +++.+ ..+......+-....+ .+.+...+-.+++|++ +|.+++.+
T Consensus 21 ~E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~ 94 (491)
T PF03219_consen 21 SELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI 94 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 4456667777777776665543332 23322 1144445555443333 4455667779999998 99998887
Q ss_pred HHHHHHHHHHHHHHhhc--CCCCCCC-CCCCCccccccCCch----hhHHHHHHHHHHHHHhccCccc-chhhhcccCCC
Q 008020 102 FATVQTFGTGLLAISTK--QPQLRPP-PCQATDITKCQHASG----IQMGVLYISLYLIALGTGGLKS-SVSGFGTDQFD 173 (581)
Q Consensus 102 ~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~----~~~~~l~~~~~l~glg~g~~~~-~~~~~~~~~~~ 173 (581)
....+..-..++++.-. ...+.|+ .++..+.....+-.+ -..|...+.-++.-+=.....+ .-+++..|.+.
T Consensus 95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt 174 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT 174 (491)
T ss_pred HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 76655554444443311 0111111 111000000000000 0011111111111111112222 45788899998
Q ss_pred CCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020 174 EKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD 210 (581)
Q Consensus 174 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 210 (581)
.++ -.|.++++..+.|+|.+++..+..++.+
T Consensus 175 ~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 175 VEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 8889999999999999998888877766
No 272
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=92.58 E-value=17 Score=39.01 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHH-HHHhhhcCC
Q 008020 453 YLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVS-IVKAATGSN 517 (581)
Q Consensus 453 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~-~i~~~~~~~ 517 (581)
.++..+++..+.....+.+..++.+.++.|.+-|++|.+.|+..++|+.--..++- ++...|.+.
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~ 472 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT 472 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence 44556788888888889999999999999999999999999999998866554444 344444443
No 273
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=91.85 E-value=0.61 Score=48.74 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020 143 MGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI 208 (581)
Q Consensus 143 ~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 208 (581)
.+..++..+..|+..|..+.+....+.|..++++ |..+++...++-++|..++.+++-.+
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6777777888899999999999999999888887 99999998888888888887666544
No 274
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.01 E-value=5.9 Score=42.29 Aligned_cols=116 Identities=22% Similarity=0.169 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHh---hhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHH
Q 008020 75 MGTSFLLCLLGGFLA---DSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLY 151 (581)
Q Consensus 75 ~~~~~~~~~~~G~la---D~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (581)
.++..++.++.+.+. +++ ||++.+.++..+..++.++..++ .|..- |..-||.....-. .......+.-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~--~p~da--p~~~t~~~~~~~~--~~~~~~~ii~~ 361 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLS--FPNDA--PLRPTDSPPLLFT--PSYYLALIIGF 361 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhcc--ccccC--CCCCCcccccccc--cchhHHHHHHH
Confidence 344444555556665 445 89999999999888888877665 23211 1111121111111 23445566667
Q ss_pred HHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHH
Q 008020 152 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTV 204 (581)
Q Consensus 152 l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 204 (581)
+.|++-+......+.++++.+| ++ |..+++++-.-..++..++...
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhh
Confidence 8899999999999999999994 44 6777777666555666554433
No 275
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.26 E-value=26 Score=36.67 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=42.7
Q ss_pred ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 008020 451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL 506 (581)
Q Consensus 451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~ 506 (581)
-++.+....+.|+..+-.....+.+..+.+|++.+..+-.+..+....|-..|..+
T Consensus 343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred chHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35667777888999888888888899999998888777766666666666665544
No 276
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=89.78 E-value=0.69 Score=48.52 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccccceeeeecccccccccccccc---chhhhhhhHHHHHHHHHhhhhhhhhccccccCCC
Q 008020 328 MVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIP---AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP 404 (581)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~ 404 (581)
+++....+.+..-+.|....++.+.+.++. +++ .+....+..+..++.+|+.+...|+...|+++|+
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~l----------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR 102 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQSL----------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR 102 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHc----------CCCcccccccccccccccceeccccccccccccccccccc
Confidence 344444444555555666665555443321 222 2334455667778889999999888877776542
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcch
Q 008020 405 GFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM 484 (581)
Q Consensus 405 ~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~ 484 (581)
.-+..+..+++++++++++..+...-..+... ...........++.+.+.-++......+.=++..+...++.
T Consensus 103 -----PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~--~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~ 175 (498)
T KOG0637|consen 103 -----PFILAGSLLIAVSLFLIGYAADIGLLLGDNER--KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA 175 (498)
T ss_pred -----chHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc--cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh
Confidence 12566778888888888777554322211111 00112233444555666667776667677778888877777
Q ss_pred hHH-HHHHHHHHHhHHHHHHHHHHH
Q 008020 485 KTM-STGLFLTTLSLGFFFSSLLVS 508 (581)
Q Consensus 485 rg~-~~gi~~~~~~lg~~~g~~~~~ 508 (581)
+-+ +.+.+.+...+|+.+|-.+.+
T Consensus 176 ~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 176 KKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhccchhHHHHHHhcceeeeeccc
Confidence 777 999999999999999876654
No 277
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=89.75 E-value=17 Score=37.31 Aligned_cols=140 Identities=12% Similarity=-0.017 Sum_probs=74.3
Q ss_pred hhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeh
Q 008020 373 SLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVF 452 (581)
Q Consensus 373 ~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (581)
.+........++++++.+.+.|+++||+. -++..++..++. +... ..+..
T Consensus 73 ~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~----------cl~~cily~~sc----l~k~----------------~~~~~ 122 (354)
T PF05631_consen 73 ILFVAGFASSAIFGTFVGSLADRYGRKKA----------CLLFCILYSLSC----LTKH----------------SSNYP 122 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHH----------HHHHHHHHHHHH----HHHh----------------ccccH
Confidence 34455567778889999999988887742 112122222222 1111 23456
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHhhh-----ccCCcchhHHHHHHHH-HHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCC
Q 008020 453 YLIPQFFLVGSGEGFMYTGQLDFFI-----TQSPKGMKTMSTGLFL-TTLSLGFFFSSLLVSIVKAATGSNGKHGWVGEN 526 (581)
Q Consensus 453 ~li~~~~l~g~~~~~~~~~~~~~~~-----~~~P~~~rg~~~gi~~-~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~ 526 (581)
.+++.-++.|++..+.+...-++.. .-+|++..+...+... ..+.+-...+..+.-.+.+..+
T Consensus 123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~----------- 191 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG----------- 191 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-----------
Confidence 6777888899988888876555432 2355555555544444 3344444444444433322111
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020 527 INKGRLDCFYGLLAALSFINFGLFLLCASW 556 (581)
Q Consensus 527 ~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~ 556 (581)
. +....|....++.+++.+++....+|
T Consensus 192 --~-g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 192 --F-GPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred --C-CCcchHHHHHHHHHHHHHHHHhcccc
Confidence 1 11233556566666666655555444
No 278
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=89.18 E-value=10 Score=38.67 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=58.9
Q ss_pred eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCcc
Q 008020 450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINK 529 (581)
Q Consensus 450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~ 529 (581)
+.|+.-..+++....+.+..+....-+++....+.-|...|++.+..-+-..+-+.++ .+..+. + ++-...-
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~----~-L~ir~Q~ 396 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGL----G-LDIRTQF 396 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---Eccccc----C-CCcceeE
Confidence 4667778888888888888888888888888888899999998876655444433332 110000 0 0000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 008020 530 GRLDCFYGLLAALSFINFGLFLLC 553 (581)
Q Consensus 530 ~~~~~~f~~~~~~~~i~~~~~~~~ 553 (581)
.-+..+|.+.+++.+++....+..
T Consensus 397 ~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 397 VVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred EEEeehHHHHHHHHHHHHHHHHHH
Confidence 112345777777777776654433
No 279
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=89.10 E-value=2.8 Score=44.69 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020 142 QMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL 205 (581)
Q Consensus 142 ~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 205 (581)
+.+..++..++.|+..|-..+....+..+..++++ |..+..+...+..+|-.+|..++
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677888999999999999999988888766 77777777777777777776544
No 280
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=89.06 E-value=36 Score=36.65 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHhh-hHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008020 454 LIPQFFLVGSGEGFMYT-GQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKA 512 (581)
Q Consensus 454 li~~~~l~g~~~~~~~~-~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~ 512 (581)
....|+...+....+.. ..|.++.|....++..+..++.....++|..+|+.+...+..
T Consensus 131 ~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 131 FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554444454 889999999999999999999999999999999988876653
No 281
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=88.95 E-value=36 Score=36.39 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=48.4
Q ss_pred eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 008020 450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLV 507 (581)
Q Consensus 450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~ 507 (581)
+-++.++..++.|+..|......+.+..+.++++.|..+-.+..+...+|-..|..++
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566678899999999999999999999999999988888888888888887664
No 282
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=88.93 E-value=3.5 Score=40.28 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccch--HHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCccccccCCchhhH
Q 008020 67 SANIVTDFMGTSFLLCLLGGFLADSFLGRY--RTIAIFATVQTFGTGLLAISTK-QPQLRPPPCQATDITKCQHASGIQM 143 (581)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~G~laD~~~Grr--~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (581)
-|.+.+.+++++.++.-+...+..|- ..| ..+.+..++..+...+..+..+ .|. ..++
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~------------------kes~ 344 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPS------------------KESP 344 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCC------------------cCCc
Confidence 47888888888888887777776654 222 3444554444433333322211 111 1223
Q ss_pred HHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHH
Q 008020 144 GVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSI 223 (581)
Q Consensus 144 ~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~ 223 (581)
..-+++-.++-.+.|.++|...-+=++..|++. |++.++++..-.|+-..++-..--.-..-.+-|..|.++.+
T Consensus 345 ~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~ 418 (454)
T KOG4332|consen 345 SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA 418 (454)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence 444666777778889999999999999999998 99999998887776554442110000011245667777776
Q ss_pred HHHHHHH
Q 008020 224 CMFTAIL 230 (581)
Q Consensus 224 ~~~~~~~ 230 (581)
...++.+
T Consensus 419 ~~~~a~i 425 (454)
T KOG4332|consen 419 FLFVASI 425 (454)
T ss_pred HHHHHHH
Confidence 6555533
No 283
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=87.33 E-value=19 Score=36.13 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=40.7
Q ss_pred eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 008020 450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLV 507 (581)
Q Consensus 450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~ 507 (581)
+.+.+.+..++=|+--+..+...+--+.+..+++.|-.+|+......++|..++..++
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 3333333444445555555666666677778899999999999999998888877665
No 284
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=86.92 E-value=7.3 Score=39.31 Aligned_cols=118 Identities=9% Similarity=-0.036 Sum_probs=69.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
+...|..+++....+.. ++.|.-..++......++| ....+ ..++......++.+.+..++ |-|+++.++..
T Consensus 25 ~~~~knv~i~s~~fl~~-f~a~~gl~nlq~~vn~~lg--~~sl~----~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~ 96 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLLT-FTAYLGLQNLQTSVNYDLG--TVSLG----ALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVF 96 (390)
T ss_pred cchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhcCcc--cchhh----hhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 44456666555554444 4444445566655544333 22222 23444455555556666665 99999988776
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCC
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEK 175 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~ 175 (581)
.++.-... +.. ..+..+.-+-...|.|.+..+..-.++++++-...
T Consensus 97 ~Y~lyiA~-----Nl~--------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 97 PYALYIAA-----NLE--------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred HHHHHHHh-----hcc--------------------hhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 65543221 111 12445666677889999999999888888766543
No 285
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=84.91 E-value=20 Score=34.56 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHhhhccCCc-chhHHHHHHHHH-HHhHHHHHHHHHHHHHH
Q 008020 452 FYLIPQFFLVGSGEGFMYTGQLDFFITQSPK-GMKTMSTGLFLT-TLSLGFFFSSLLVSIVK 511 (581)
Q Consensus 452 ~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~-~~rg~~~gi~~~-~~~lg~~~g~~~~~~i~ 511 (581)
+.++......|++.+...+....++.+..|+ +.|+...+.... ...++..+++.+.+.+.
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555558888888899999999999998 778888888887 57778888886666554
No 286
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=84.58 E-value=6.4 Score=40.60 Aligned_cols=98 Identities=11% Similarity=0.045 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCC-CCCCcCCCCccchhhHH
Q 008020 457 QFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNG-KHGWVGENINKGRLDCF 535 (581)
Q Consensus 457 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~-~~~w~~~~~~~~~~~~~ 535 (581)
.+++.-+.-+....+.-.+......++.-|-++......+..|.+++..+.-.+....=.++ ...| |.+-..-.+..+
T Consensus 139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~-P~~~g~ItL~gy 217 (510)
T KOG3574|consen 139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSI-PLDQGFITLAGY 217 (510)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcC-cCccceEEhhHH
Confidence 44555566666667766677777777777777777777777777776654432211000000 0011 111111233455
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 008020 536 YGLLAALSFINFGLFLLCAS 555 (581)
Q Consensus 536 f~~~~~~~~i~~~~~~~~~~ 555 (581)
.++.+.+.+++.....++.+
T Consensus 218 ~~fwg~~~~vat~Lv~~~kk 237 (510)
T KOG3574|consen 218 LWFWGALFIVATTLVALLKK 237 (510)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 66777777777666666643
No 287
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=77.59 E-value=79 Score=33.36 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=46.5
Q ss_pred eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020 450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK 511 (581)
Q Consensus 450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~ 511 (581)
+...+-+.-+++|++.+. ..+-++|+...+|++.--++++....+.-+|..++..+.-.+.
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677776544 6778899999999999999999888888888888877766554
No 288
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=74.92 E-value=89 Score=30.68 Aligned_cols=58 Identities=9% Similarity=0.187 Sum_probs=34.8
Q ss_pred HhhHHHHHHHHHHhhHHHHHHH--HH-Hhhc--ccchhhHHHHHHHHHHHHHHHHHHcccccc
Q 008020 183 MAYFFSRFFFVISTGTLMAVTV--LV-YIQD--EVGRSWGYGICSICMFTAILIFLSGTRRYR 240 (581)
Q Consensus 183 r~~~~~~~~~~~~~g~~i~~~~--~~-~l~~--~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~ 240 (581)
|+.......++.++|++++-+. .+ -.++ .-.|++++.+.+++.++-++++....++..
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd 66 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFD 66 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 5556666667788888776332 22 1111 124999888887777666666665555443
No 289
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=73.63 E-value=39 Score=33.06 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccc
Q 008020 482 KGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWY 557 (581)
Q Consensus 482 ~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~ 557 (581)
+-+|..++|+-....+..+.+..+..+.. ||+..+-+.....+.-++..++.+++.+++.+..++.
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grf----------GlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRF----------GLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhc----------eeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 34455555555555454445544555432 4442221111223334455566667766666654443
No 290
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=73.26 E-value=26 Score=37.65 Aligned_cols=48 Identities=8% Similarity=-0.071 Sum_probs=31.6
Q ss_pred HHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008020 463 SGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIV 510 (581)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i 510 (581)
+-.+....+.--++..+..++.++-++......+.+|.+++..+.-.+
T Consensus 130 fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 130 FLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 333444455555555666778888888888777788877776655443
No 291
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=71.98 E-value=1.5e+02 Score=32.12 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=38.2
Q ss_pred hhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008020 470 TGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKA 512 (581)
Q Consensus 470 ~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~ 512 (581)
-.-|.++.|..+.+...+..+++....++|..+++.+...+..
T Consensus 163 lLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 163 LLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999988877654
No 292
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=60.84 E-value=2.2e+02 Score=29.80 Aligned_cols=73 Identities=10% Similarity=-0.064 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
+.+-..++....+--++-.....|+.+-.|-+..-.+.--.+-.....+..++.|..-|+. .|+|++...+.+
T Consensus 30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~-sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGM-SRVKVIQTWLLL 102 (503)
T ss_pred ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcch-hHHHHHHHHHhh
Confidence 4455566666666666666667777755553333333333334555556666678889997 999999887764
No 293
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.60 E-value=30 Score=28.63 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 76 GTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 76 ~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
+++.+.....||+.||+.|.++..++.+++
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv~ll 82 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIVFLL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 334444444599999999998865554443
No 294
>PRK03612 spermidine synthase; Provisional
Probab=60.59 E-value=1.3e+02 Score=32.85 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020 459 FLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK 511 (581)
Q Consensus 459 ~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~ 511 (581)
++.++..+...|....+..+.. .+.-|...|-.+..+.+|+.+|+.+.+++.
T Consensus 118 ~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 118 LLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 3456666666777666554322 222456678888889999999998888764
No 295
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=60.53 E-value=30 Score=36.21 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhccccC--C-ChhhhhhHHHH-HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIA-VNLVTYLGGTMH--L-PSATSANIVTD-FMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ 106 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~--~-~~~~~~~~~~~-~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 106 (581)
+.-.....+..+..|.+. +..|.++.+..+ . +..-.-..... +.+...+|.+...++-++ +||+..+...+ =
T Consensus 245 ~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v~l-R 321 (406)
T KOG1479|consen 245 FKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPVLL-R 321 (406)
T ss_pred HHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHHHH-H
Confidence 333333344333333333 355666654432 2 22333344444 777788887777776654 45554444332 2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
.+-..++.++...| .+..+ .+.+.+++...++|+..|=...+...+..+..++++ +..+
T Consensus 322 ~lfiPlF~~cn~~~--~~v~~-------------~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e------~e~a 380 (406)
T KOG1479|consen 322 LLFIPLFLLCNYPP--LPVVF-------------ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE------KEAA 380 (406)
T ss_pred HHHHHHHHHhccCC--CCcee-------------cCchHHHHHHHHHHhccchHhhheehhcCCCCChHH------HHHH
Confidence 22223333222111 00011 235667778888999999999999999999888777 5555
Q ss_pred HHHHHHHHHhhHHHHH
Q 008020 187 FSRFFFVISTGTLMAV 202 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~ 202 (581)
-.+.......|-..|.
T Consensus 381 G~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 381 GNLMVFFLVGGLALGS 396 (406)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555555555554
No 296
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=55.07 E-value=3.7 Score=41.56 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=3.8
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020 142 QMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL 205 (581)
Q Consensus 142 ~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 205 (581)
+.+..++..+++|+..|-..+....+..+..++++ |..+-.+...+.++|-.+|..++
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --------------------HHHH----------------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777888999999999999999999998777 77777777777777777775544
No 297
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=53.59 E-value=89 Score=32.21 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=65.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHH
Q 008020 66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGV 145 (581)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (581)
-.|.+=.+..+.++++.+..|++--.+ .|..-++++.....-+.+++..+.+ .+.+.
T Consensus 272 yNG~veAv~tlLGa~~~~~~g~l~i~w-~r~g~~ll~~~s~~~agllf~m~~t----------------------~~Iw~ 328 (433)
T KOG3810|consen 272 YNGAVEAVSTLLGAIAALAAGYLNINW-NRWGDLLLAVGSAVQAGLLFIMAQT----------------------QHIWV 328 (433)
T ss_pred hcCHHHHHHHHHHHHHHHHHHheeecc-chhhHHHHHHHHHHhhhhhhhhhcc----------------------cceeh
Confidence 346666777888899999999998777 6665444444433333333333311 23677
Q ss_pred HHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020 146 LYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192 (581)
Q Consensus 146 l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (581)
.+++-++...-.....+.+..-++.....+. -|..+|+..+
T Consensus 329 ~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~------~gLvFGiNTF 369 (433)
T KOG3810|consen 329 CYAGYVLFRVIYQLTITIATFQIARNLSSEL------FGLVFGINTF 369 (433)
T ss_pred hhhhHHHHHhhHhhhhhHHHHHHHHhhhhhh------heeeeehHHH
Confidence 7888888877777777888788888887777 6766666433
No 298
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=44.99 E-value=31 Score=33.73 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHH---------hhhcccchHHH
Q 008020 33 LSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFL---------ADSFLGRYRTI 99 (581)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~l---------aD~~~Grr~~l 99 (581)
.--..++.+..+--.+.+++..|++ +.+.++...++++.+.....++..++-|.. -||+ |||+..
T Consensus 21 ~yGvGHmlNDitAScWFTYlllflt-qiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~-G~~~~w 94 (412)
T KOG4830|consen 21 AYGVGHMLNDITASCWFTYLLLFLT-QIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRI-GRRMSW 94 (412)
T ss_pred eechhHHHhhHHHHHHHHHHHHHHH-HhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhh-cceeee
Confidence 3445678888888888889999988 457777777788888899999988888744 5787 998754
No 299
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=44.50 E-value=61 Score=28.93 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020 143 MGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM 200 (581)
Q Consensus 143 ~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i 200 (581)
...+.+..+++|+|.- ...+..++-.-++++ -|.++||-.+-.|++-+.
T Consensus 97 ~~~~~~S~~~Fg~gll---GisYGilSaSWD~~r------~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 97 WAVLLVSLVFFGLGLL---GISYGILSASWDPER------EGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred hHHHHHHHHHHHHHHH---hhhhhhcccccCCCC------CCCcccHHHHHHhHHHHH
Confidence 4555666666665543 355566677777777 799999988888887654
No 300
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=41.71 E-value=1.1e+02 Score=21.73 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 008020 73 DFMGTSFLLCLLGGFLADSFLGRYRTIAIF 102 (581)
Q Consensus 73 ~~~~~~~~~~~~~G~laD~~~Grr~~l~~~ 102 (581)
.......+.....|+..|++++.++...+.
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~ 37 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLI 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 344555666677799999988986554443
No 301
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=29.82 E-value=1e+02 Score=34.12 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 008020 140 GIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE 211 (581)
Q Consensus 140 ~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 211 (581)
+-+..+++--.+++|++.........-+.-+++|++- |+.+.+++.....+|..++.++.......
T Consensus 455 ~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM------kS~~~al~l~t~a~G~~lss~Lv~~v~~~ 520 (571)
T KOG1237|consen 455 PMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM------KSVATALWLLTVAVGNYLSSVLVSLVQFS 520 (571)
T ss_pred CeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777778889999999988888888999999999 99999999999999999998888665443
No 302
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.38 E-value=4.6e+02 Score=32.10 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHhhcccch
Q 008020 197 GTLMAVTVLVYIQDEVGR 214 (581)
Q Consensus 197 g~~i~~~~~~~l~~~~g~ 214 (581)
|+++|..++..+...+|.
T Consensus 143 GGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 143 GGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred cchHHHHHHHHHHHHHhH
Confidence 555555555444444443
No 303
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=27.54 E-value=6.1e+02 Score=25.06 Aligned_cols=56 Identities=20% Similarity=0.064 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020 482 KGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRK 560 (581)
Q Consensus 482 ~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 560 (581)
+..++...|+.+...++...++....|.. .-|.+.-.-.+++.+.-.++.+|.|.+
T Consensus 194 ~~~~nil~G~~w~ignl~~~is~~~~G~a-----------------------~af~lSQ~~vvIStlgGI~il~E~Kt~ 249 (269)
T PF06800_consen 194 KSWKNILTGLIWGIGNLFYLISAQKNGVA-----------------------TAFTLSQLGVVISTLGGIFILKEKKTK 249 (269)
T ss_pred chHHhhHHHHHHHHHHHHHHHhHHhccch-----------------------hhhhHHhHHHHHHHhhhheEEEecCch
Confidence 34556666666666666555554433321 124444444555656566666765543
No 304
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.00 E-value=2.4e+02 Score=23.26 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008020 70 IVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLL 113 (581)
Q Consensus 70 ~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~ 113 (581)
.++...+...+...+.|..-|+.++-++.+.+.+++..++..+.
T Consensus 47 ~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
No 305
>COG2119 Predicted membrane protein [Function unknown]
Probab=24.47 E-value=5.1e+02 Score=23.98 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 72 TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 72 ~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
....+++.++.+.+.++++|+ --|++-.++.+++.+
T Consensus 141 lg~~l~s~laVl~G~~ia~ki-~~r~l~~~aallFl~ 176 (190)
T COG2119 141 LGMILASVLAVLLGKLIAGKL-PERLLRFIAALLFLI 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 345677788888889999998 888777766655444
No 306
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.98 E-value=3.3e+02 Score=21.06 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI 231 (581)
Q Consensus 187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 231 (581)
--+++....++++++. +.|++.+. .+..+++.++..++++++
T Consensus 10 e~l~~~il~~~~iisf-i~Gy~~q~--~~~~~~~~~~g~~~~~lv 51 (76)
T PF06645_consen 10 EKLMQYILIISAIISF-IVGYITQS--FSYTFYIYGAGVVLTLLV 51 (76)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 3455556677777775 45566554 355555555444444433
No 307
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=20.71 E-value=2.4e+02 Score=23.49 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=38.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008020 65 ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLA 114 (581)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~ 114 (581)
+..|-+..++.....+.+++++|..|+. -.-+-=.++..++.+|..+..
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~-~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGV-RPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCc-CCChHHHHhHHHHHHhHHheE
Confidence 5678899999999999999999999998 665555667766666665443
No 308
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=20.52 E-value=9.3e+02 Score=24.66 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 008020 533 DCFYGLLAALSFINFGLFLL 552 (581)
Q Consensus 533 ~~~f~~~~~~~~i~~~~~~~ 552 (581)
++.|++..++.+++.+++..
T Consensus 286 ~~ly~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 286 SWLYILAFALIIIGFVVYNL 305 (334)
T ss_pred cHHHHHHHHHHHHHhheEEc
Confidence 45555544444454444433
No 309
>PF12832 MFS_1_like: MFS_1 like family
Probab=20.37 E-value=1.5e+02 Score=22.95 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=21.5
Q ss_pred chhhhhhhHHHHHHHHHhhhhhhhhcccc
Q 008020 371 AASLTVFFVAAILITLGAYDRLIIPLLKK 399 (581)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r 399 (581)
.+.+..+..+..++..|+.+.+.||..++
T Consensus 37 iGil~~i~~~~~~~~~pl~g~laDk~~~~ 65 (77)
T PF12832_consen 37 IGILSAIRPLIRFLAPPLWGFLADKFGKR 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 34455666777888899999998877655
Done!