Query 008020
Match_columns 581
No_of_seqs 221 out of 2422
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2E-30 6.9E-35 279.3 29.4 445 25-560 9-478 (491)
2 2xut_A Proton/peptide symporte 100.0 3.2E-30 1.1E-34 280.3 25.0 480 26-563 9-512 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.7E-27 5.8E-32 253.1 25.4 399 28-555 27-435 (451)
4 4gc0_A D-xylose-proton symport 99.9 9.5E-28 3.2E-32 258.3 15.3 413 63-568 53-477 (491)
5 3o7q_A L-fucose-proton symport 99.9 5.5E-25 1.9E-29 232.8 30.7 359 25-514 22-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 1.9E-23 6.6E-28 216.6 17.7 346 32-511 3-350 (375)
7 2cfq_A Lactose permease; trans 99.9 1.3E-22 4.5E-27 214.0 11.0 393 29-559 7-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 4E-12 1.4E-16 134.2 18.9 178 29-234 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.2E-11 3.9E-16 130.3 17.0 168 29-230 258-427 (438)
10 2cfq_A Lactose permease; trans 99.3 2.2E-11 7.4E-16 127.9 12.4 175 29-234 220-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 3.9E-10 1.3E-14 120.6 11.6 186 30-238 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 4E-09 1.4E-13 112.6 15.0 183 30-238 277-465 (491)
13 2gfp_A EMRD, multidrug resista 98.8 8.2E-10 2.8E-14 113.7 2.8 164 29-222 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 3.4E-06 1.2E-10 90.6 10.9 138 372-553 57-198 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=2e-30 Score=279.33 Aligned_cols=445 Identities=20% Similarity=0.260 Sum_probs=290.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh-cccchHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGT-----MHLPSATSANIVTDFMGTSFLLCLLGGFLADS-FLGRYRT 98 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grr~~ 98 (581)
++++|.++.+.+..++..+++|++..+++.|+++. +|++..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45677889999999999999999999999999988 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChH
Q 008020 99 IAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEK 178 (581)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~ 178 (581)
+.++.++..++.++++++.+ .+.++++|++.|+|.+...+...++++|.+|+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 143 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFG------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCS------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHhhh------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc
Confidence 99999999999988877622 677899999999999999999999999999987743
Q ss_pred HHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccC---CCC-ChhHHHHH
Q 008020 179 EKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKK---CSG-SPIVHICQ 254 (581)
Q Consensus 179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 254 (581)
|+.++++++...++|..++|.+++++.+..||+++|++.++..+++++...+..++...++ ++. ....+..+
T Consensus 144 ----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 144 ----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred ----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 7778888999999999999999999999899999999887776666655554433222111 111 11111111
Q ss_pred HHHH--------------HHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCc
Q 008020 255 VVVA--------------ARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPV 320 (581)
Q Consensus 255 ~l~~--------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (581)
.... .....+... ++...... ............. .|+....
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~------------------~~~~~~~ 274 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVGWNSL-PAYINLLT------IVAIAIPVFYFAW------------------MISSVKV 274 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHSSCCT-THHHHHHH------HHHHHHHHHHHHH------------------HC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccc-ccchhhhh------HHHHHHHHHHHHH------------------Hhhcccc
Confidence 0000 000000000 00000000 0000000000000 0000000
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeecc-ccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhcccc
Q 008020 321 TRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQAT-TMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKK 399 (581)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r 399 (581)
...++++......++.....++..+.+....+..+.. ..+.+ ....+.......+..++..++.+++.+|+.||
T Consensus 275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r 349 (491)
T 4aps_A 275 -TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN 349 (491)
T ss_dssp --------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc
Confidence 0112222223333444444555555544432221111 11111 13455666777788888888888888777665
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhcc
Q 008020 400 RKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQ 479 (581)
Q Consensus 400 ~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~ 479 (581)
. ......+..+..+.+++++.+....... + .+...+.+++++.+++.+++.+...|..+.++.|.
T Consensus 350 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 414 (491)
T 4aps_A 350 Q-----PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G---TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414 (491)
T ss_dssp --------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C---CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred C-----CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C---CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 2 3345556778888888877666543210 0 01123556677788889999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020 480 SPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKR 559 (581)
Q Consensus 480 ~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 559 (581)
+|++.||+++|+.+..+.+|..+++.+.+.+.+ .+....|++.++++++..++.+++.++.++
T Consensus 415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765421 122456777777887777777777665554
Q ss_pred c
Q 008020 560 K 560 (581)
Q Consensus 560 ~ 560 (581)
+
T Consensus 478 ~ 478 (491)
T 4aps_A 478 L 478 (491)
T ss_dssp -
T ss_pred H
Confidence 3
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.2e-30 Score=280.25 Aligned_cols=480 Identities=22% Similarity=0.334 Sum_probs=284.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccC------CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Q 008020 26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMH------LPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTI 99 (581)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l 99 (581)
+++|.++.+.+..++..+++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 445678889999999999999999999999999999 99999999999999999999999999999965999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHH
Q 008020 100 AIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKE 179 (581)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~ 179 (581)
.++.++..++.++++++. . +.+.++++|++.|++.+...+...+++.|.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~--~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 142 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE--H---------------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS--S---------------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred HHHHHHHHHHHHHHHHhc--c---------------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence 999999999998888762 0 27889999999999999999999999999999988
Q ss_pred HhHHhhH---HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHH
Q 008020 180 KTQMAYF---FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVV 256 (581)
Q Consensus 180 ~~~r~~~---~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (581)
|+++ +++++...++|..++|.+++++.+..||++.|++.+++.+++.+......++.+++++++++.....+.+
T Consensus 143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 7544 4558889999999999999999988899999998887766666555544443322222222111111111
Q ss_pred HHHHhhcccccCCCccccccCCccc---cccccCcccchhccccc----cccCCCCCCCCccCCCC-------cccCcch
Q 008020 257 VAARKKRKVELPSSTASLYEDYPEE---SRIQHTYQFRCLDKASV----VTNTDYSEDGAFVSNPW-------TLCPVTR 322 (581)
Q Consensus 257 ~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~ 322 (581)
....++++.+.+ ......+..... ......+.........+ ..++ ..+.+| +..+...
T Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 291 (524)
T 2xut_A 220 RSALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-------VGAGASLQLERARKSHPDAA 291 (524)
T ss_dssp -------CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-------HHTGGGTHHHHSCCSCCSSS
T ss_pred HHHHhhhhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-------cccchhhHHhhhhccccHhH
Confidence 111111110000 000000000000 00000000000000000 0000 000011 0001111
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccC
Q 008020 323 VEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKG 402 (581)
Q Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~ 402 (581)
.+++++.+....++.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV 368 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence 223344444444444445555555555443333222222110 0 2345556666677778888888876555455432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCc
Q 008020 403 KPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPK 482 (581)
Q Consensus 403 ~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~ 482 (581)
+.+..+.+.+++++.+++++.++...... +.+...+.+++++.+++.+++++...+..++++.|.+|+
T Consensus 369 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 436 (524)
T 2xut_A 369 --KLTALRKMGAGIAITGLSWIVVGTIQLMM----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK 436 (524)
T ss_dssp ----CCHHHHHTHHHHHHHHHHTTTTTTTTT----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 24455566778877777776655431100 000123556677788899999999999999999999999
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCC-CCccchhhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 008020 483 GMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGE-NINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKK 561 (581)
Q Consensus 483 ~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~ 561 (581)
+.||+++|++++...+|+.+++.+.+.+.+.++ .+|.+. +.+. ....|++.+++++++.++++++.+++++++
T Consensus 437 ~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 437 AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999987642110 123211 0110 122367778888888887777777666554
Q ss_pred cC
Q 008020 562 AK 563 (581)
Q Consensus 562 ~~ 563 (581)
.+
T Consensus 511 ~~ 512 (524)
T 2xut_A 511 HY 512 (524)
T ss_dssp --
T ss_pred hh
Confidence 43
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=1.7e-27 Score=253.07 Aligned_cols=399 Identities=8% Similarity=-0.079 Sum_probs=256.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
++.++.+.+..++..+..+.+.+.++.+.+ ++ .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 456677777777777777777777766554 56 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHH----hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020 108 FGTGLLAI----STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183 (581)
Q Consensus 108 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r 183 (581)
++.+++++ +.+ .+.++++|++.|++.+...+...+++.|.+|+++ |
T Consensus 104 ~~~~~~~~~~~~~~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATSS------------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHCHHHHSS------------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHhhhhcccc------------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 99999888 632 6678999999999999999999999999999988 9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhh
Q 008020 184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKK 262 (581)
Q Consensus 184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (581)
++++++.+...++|..++|.+++++.+..| |++.|++.+++.++..++..+..++.+......+..
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 220 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE------------- 220 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-------------
Confidence 999999999999999999999999888888 999999887766655444433333221111000000
Q ss_pred cccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHH
Q 008020 263 RKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTIL 341 (581)
Q Consensus 263 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 341 (581)
+. +.+.+ +. .. . ++. ....++........+.+.++..... ++....
T Consensus 221 ------~~-----~~~~~-~~--~~-------~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (451)
T 1pw4_A 221 ------EY-----KNDYP-DD--YN-------E----KAE--------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 267 (451)
T ss_dssp ------TT-----CCC-----------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ------hh-----ccccc-cc--ch-------h----hhh--------cccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence 00 00000 00 00 0 000 0000000000000111222222222 122222
Q ss_pred HHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhc--cccccCCCCCChhHHHHHHHHHH
Q 008020 342 FWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPL--LKKRKGKPGFSNLQLIAIGLFLS 419 (581)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~--~~r~~~~~~~~~~~~l~~g~~l~ 419 (581)
+.......+. +..+..+.+ ....+.+.....++.++..++.+++.+|+ .+| +.+..+..+.
T Consensus 268 ~~~~~~~~~~-~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~----------~~~~~~~~~~ 330 (451)
T 1pw4_A 268 RYGILDWSPT-YLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR----------GATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHH-HBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH----------HHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----------hhHHHHHHHH
Confidence 2222221111 111100111 11123444555666667777777776554 332 2234444443
Q ss_pred H-HHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhH
Q 008020 420 A-LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSL 498 (581)
Q Consensus 420 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l 498 (581)
. ++++.+.+.. ..+.+.+....++.|++.+...+..+.++.|.+|++.||+++|+.+....+
T Consensus 331 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 331 VTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 3 4443333210 113344556667788888888888899999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 008020 499 -GFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCAS 555 (581)
Q Consensus 499 -g~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~ 555 (581)
|..+++.+.+.+.+.. ++...|++.+++.+++.++.++..+
T Consensus 394 ~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999875321 2355677777777777776665544
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=9.5e-28 Score=258.33 Aligned_cols=413 Identities=12% Similarity=0.029 Sum_probs=232.3
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhh
Q 008020 63 PSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQ 142 (581)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (581)
+..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++++++......... .......-..+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~------~~~~~~~~a~~ 125 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP------DNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS------SSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc------hhHHHHHHhhh
Confidence 345678888999999999999999999999 99999999999999999998864210000000 00000001235
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc--------cch
Q 008020 143 MGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE--------VGR 214 (581)
Q Consensus 143 ~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~--------~g~ 214 (581)
.+.++++|+++|+|.|+..+..+.+++|..|++. |++..++.+.+..+|..+++.++..+... .+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8889999999999999999999999999999999 99999999999999999998887665432 346
Q ss_pred hhHHHHHHHHHHHHHHHHHHccccccc--cCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccch
Q 008020 215 SWGYGICSICMFTAILIFLSGTRRYRY--KKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRC 292 (581)
Q Consensus 215 ~~~f~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 292 (581)
+..+.+..+..++.++..+...+..+. .+.+.++..+. +.....+.... . +. .+....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~---l~~~~~~~~~~-~-------------~~---~~~~~~ 259 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI---LRKIMGNTLAT-Q-------------AV---QEIKHS 259 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH---HHHHHHHHHHH-H-------------HH---HHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh---HHHhcCCchhH-H-------------HH---HHHHHH
Confidence 666665554444433333222211111 11111111111 11100000000 0 00 000000
Q ss_pred hccccccccCCCCCCCCccCCCCcccCcchhHhHHHHH-HHHHHHHHHHHHHhhhccccceeeeeccccccccccccccc
Q 008020 293 LDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVI-RLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPA 371 (581)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (581)
.+.. .... ........++.. ......+...........+.+..... .... ....
T Consensus 260 ~~~~--------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~ 314 (491)
T 4gc0_A 260 LDHG--------------RKTG----GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT---LGAS----TDIA 314 (491)
T ss_dssp HHHH--------------HHHT----THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---SSCC----HHHH
T ss_pred HHhh--------------hhhh----hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh---cCCC----ccch
Confidence 0000 0000 000000011111 11111111111001111111100000 0000 1111
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeee
Q 008020 372 ASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISV 451 (581)
Q Consensus 372 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (581)
........+..++...+...+.+|++||. .+..+...++++++.++..... ....
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~dr~Grr~----------~~~~~~~~~~~~~~~l~~~~~~---------------~~~~ 369 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTVLAIMTVDKFGRKP----------LQIIGALGMAIGMFSLGTAFYT---------------QAPG 369 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSHH----------HHHHHHHHHHHHHHHHHHHHHT---------------TCCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcc----------hhccchHHHHHHHHHHHHHHhc---------------ccch
Confidence 22233344445555556666666666653 2566666776666655544221 1111
Q ss_pred hhhHHHHHHHHHH-HHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccc
Q 008020 452 FYLIPQFFLVGSG-EGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKG 530 (581)
Q Consensus 452 ~~li~~~~l~g~~-~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~ 530 (581)
+..+....+...+ .....|..+.+..|.+|++.|++++|+.+..+.+++.+++.+.+.+.... |.. ...
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~---~~~ 439 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLV---AHF 439 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHH---HHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---hhh
Confidence 2222222222222 33345788899999999999999999999999999999998888653211 100 001
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccccccccCCchhh
Q 008020 531 RLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVPEM 568 (581)
Q Consensus 531 ~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 568 (581)
+....|++++++++++.++.+++.||+|+|++||.+++
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 12345788899999999999999999999999988764
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=5.5e-25 Score=232.84 Aligned_cols=359 Identities=14% Similarity=0.092 Sum_probs=234.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020 25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT 104 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 104 (581)
+++++.+..+....++..+......+.+| ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34455666666677777777665555555 46778999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+..++.+++......+ +.+.++++|++.|++.+...+...++++|.+|+++ |+
T Consensus 100 ~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~ 152 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM---------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GH 152 (438)
T ss_dssp HHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HH
T ss_pred HHHHHHHHHHhccccc---------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HH
Confidence 9999998883221112 28889999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhh-cccc-------------------------hhhHHHHHHHHHHHHHHHHHHcc-c
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQ-DEVG-------------------------RSWGYGICSICMFTAILIFLSGT-R 237 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~-~~~g-------------------------~~~~f~i~~~~~~~~~~~~~~~~-~ 237 (581)
+++++.+...++|..++|.+++++. +..+ |++.|++.++..++..+..+..+ +
T Consensus 153 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p 232 (438)
T 3o7q_A 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP 232 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 5554 89999766655444444333321 1
Q ss_pred cccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcc
Q 008020 238 RYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTL 317 (581)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (581)
+.+++++++++.. . ....+
T Consensus 233 ~~~~~~~~~~~~~------------------------------------~-----------------------~~~~~-- 251 (438)
T 3o7q_A 233 ALQSDNHSDAKQG------------------------------------S-----------------------FSASL-- 251 (438)
T ss_dssp CCTTTCCCCSSTT------------------------------------S-----------------------HHHHH--
T ss_pred ccccccccccccc------------------------------------c-----------------------hhhhH--
Confidence 1110000000000 0 00000
Q ss_pred cCcchhHhHHHHHHHH-HHHHHHHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhc
Q 008020 318 CPVTRVEEVKMVIRLL-PIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPL 396 (581)
Q Consensus 318 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 396 (581)
....+.+.+.... ..++............+.++..+..+.+ ....+.+.....+..++..++.+++.+|+
T Consensus 252 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~ 322 (438)
T 3o7q_A 252 ---SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRF 322 (438)
T ss_dssp ---HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000001111111 1111111111221222211011110111 11223344445566666677777776665
Q ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhh
Q 008020 397 LKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFF 476 (581)
Q Consensus 397 ~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~ 476 (581)
.+| +.+..+.++.+++++.+.+.. + .+.+..+++.+++.+...|..+.+.
T Consensus 323 ~~~----------~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~g~~~~~~~~~~~~~~ 372 (438)
T 3o7q_A 323 APH----------KVLAAYALIAMALCLISAFAG-------------------G-HVGLIALTLCSAFMSIQYPTIFSLG 372 (438)
T ss_dssp CHH----------HHHHHHHHHHHHHHHHHHHCC-------------------H-HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cch----------HHHHHHHHHHHHHHHHHHHcC-------------------C-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 225566666666655444321 1 1234445678888888899999999
Q ss_pred hccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 008020 477 ITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAAT 514 (581)
Q Consensus 477 ~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~ 514 (581)
.|..|++ +++++++.. .+.+++.+++.+.+.+.+..
T Consensus 373 ~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 373 IKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred Hhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9999987 999999887 67799999999999876543
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=1.9e-23 Score=216.62 Aligned_cols=346 Identities=11% Similarity=0.023 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020 32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG 111 (581)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 111 (581)
+.+....++..+....+.+.++.+ .+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 455666777777777777777765 568999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020 112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191 (581)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 191 (581)
+..++. +.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 81 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 130 (375)
T 2gfp_A 81 VAVTTS------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN 130 (375)
T ss_dssp HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred HHHHhc------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence 888773 38889999999999999999999999999999998 999999999
Q ss_pred HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCc
Q 008020 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSST 271 (581)
Q Consensus 192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~ 271 (581)
...++|..++|.+++++.+..||++.|++.++..++..+......|+. ++..++
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------------- 184 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET---RPVDAP----------------------- 184 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC---STTTCC-----------------------
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc---CCCCcc-----------------------
Confidence 999999999999999999988999999877666554433222211111 000000
Q ss_pred cccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHH-HHHHHHhhhcccc
Q 008020 272 ASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWA-TTILFWSTYAQMI 350 (581)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ 350 (581)
+ + + ...++ ++..+.|.+.......+ ............+
T Consensus 185 ----------~----~-------------~---------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
T 2gfp_A 185 ----------R----T-------------R---------LLTSY-----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSG 223 (375)
T ss_dssp ----------C----C-------------C---------TTTCS-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred ----------c----c-------------c---------HHHHH-----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 00001 11112223322222211 1212222222111
Q ss_pred ceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHH-HHHHHHHHHHH
Q 008020 351 TFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFL-SALGMASASVV 429 (581)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l-~~i~~~~~~~~ 429 (581)
.+..+..+.+ ....+.+.....++.++..++.+++.+|..+ ++..+..+ ...+...+...
T Consensus 224 -~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------------~~~~~~~~~~~~~~~~~~~~ 284 (375)
T 2gfp_A 224 -VLMGAVLGLS------SMTVSILFILPIPAAFFGAWFAGRPNKRFST------------LMWQSVICCLLAGLLMWIPD 284 (375)
T ss_dssp -CSSHHHHHHH------HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------------HHHHHHHHHHHTSSSSSHHH
T ss_pred -HHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHh
Confidence 1111101111 1112334444555556666665555432211 13344433 22222211111
Q ss_pred HHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHH
Q 008020 430 EVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSI 509 (581)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~ 509 (581)
... ..+.+.++...++.+++.+...+....+..|..| +.||+++|+.+..+.+|..+++.+.+.
T Consensus 285 ~~~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 285 WFG---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp HHH---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred hhc---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 1133445566778889999999999999999999 899999999999999999999888776
Q ss_pred HH
Q 008020 510 VK 511 (581)
Q Consensus 510 i~ 511 (581)
+.
T Consensus 349 l~ 350 (375)
T 2gfp_A 349 LP 350 (375)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=1.3e-22 Score=213.99 Aligned_cols=393 Identities=10% Similarity=-0.008 Sum_probs=221.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF 108 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 108 (581)
|.++.+....++....+..+.++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||+++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566677777777777777788999999999999999999999999999999999999999998 999999988876654
Q ss_pred HHHHH---HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 109 GTGLL---AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 109 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
+...+ .+.... ...+..++.+.+++.|...+...+...+..++..+ +++.
T Consensus 86 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNF 138 (417)
T ss_dssp CHHHHHHHTHHHHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTC
T ss_pred HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hccc
Confidence 32211 111000 00123344444544444444444444444332211 1566
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV 265 (581)
Q Consensus 186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (581)
.++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++. ++..+.
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------- 197 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATV----------------- 197 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCS-----------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---cccccc-----------------
Confidence 6777777788999999999999876 5899998866554333322221111110 000000
Q ss_pred ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020 266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST 345 (581)
Q Consensus 266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 345 (581)
++.+ + + .. .+..++ ........+..+......+.....+..
T Consensus 198 --~~~~------~---~---~~-----------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 198 --ANAV------G---A---NH-----------------------SAFSLK--LALELFRQPKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp --SSSS------S---S---CC-----------------------CCCCHH--HHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --cccc------c---c---cc-----------------------ccccHH--HHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence 0000 0 0 00 000000 000000012222222111111111112
Q ss_pred hcc-ccceeeeeccccccccccccc-cchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHH
Q 008020 346 YAQ-MITFSVEQATTMQRSIGNFKI-PAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGM 423 (581)
Q Consensus 346 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~ 423 (581)
+.+ .+.++.. ..... +.+. ..+....++.+..++...+.+++.||+.+|+ .+..+.++.++++
T Consensus 239 ~~~~~~~~~~~---~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~l~~~~~~~~~~~ 303 (417)
T 2cfq_A 239 FDQQFANFFTS---FFATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN----------ALLLAGTIMSVRI 303 (417)
T ss_dssp HHHHHHHHHHH---TSSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH----------HHHHHHHHHHHHH
Confidence 111 1111110 00000 0000 1123334444555556666677766665542 2455666665554
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH-HHHHHhHHHHH
Q 008020 424 ASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL-FLTTLSLGFFF 502 (581)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~~ 502 (581)
+.+++. .+.+.+++..++.+++.....+..+.++.|.+|++.||++.++ ++..+.+|+.+
T Consensus 304 ~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 304 IGSSFA-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp HHHTTC-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 444321 1233444445556777777777788999999999999999999 47888999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020 503 SSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKR 559 (581)
Q Consensus 503 g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 559 (581)
++.+.|.+.+. .++...|.+.+++++++.++.++..++.++
T Consensus 365 gp~l~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 365 MSVLAGNMYES----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HTHHHHTHHHH----------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred hhhhHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999866431 123556777788888877776666554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=4e-12 Score=134.24 Aligned_cols=178 Identities=16% Similarity=0.080 Sum_probs=149.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFL-GRYRTIAIFATVQT 107 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~l~~~~~~~~ 107 (581)
|.++...+..++.....+++..++|.|+++.+|++..+.+.+.+...++..++.++.|+++||+. |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 56788888889999999999999999999889999999999999999999999999999999942 78888877766655
Q ss_pred -HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020 108 -FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186 (581)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (581)
++.+++.+. +. .+.+.+.+..++.|++.+...+...+++.|.+|++. |+++
T Consensus 332 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 383 (451)
T 1pw4_A 332 TIATIVYWMN---PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 383 (451)
T ss_dssp HHHHHHTTSC---CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred HHHHHHHHHh---cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhH
Confidence 555444332 10 125667777888899888888888899999999998 9999
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 187 FSRFFFVIST-GTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 187 ~~~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+++.+...++ |..++|.+.|++.+..||+..|++.+++.+++.++.+.
T Consensus 384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999887776666655444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.35 E-value=1.2e-11 Score=130.25 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=136.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTY-LGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT 107 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 107 (581)
|.++...+..++.....+.+..+++.| +++.+|++..+.+...+...++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 467777788888888888899999999 8888899999999999999999999999999999998 99999999998888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
++.++..+.. +.. ..+..++.+++.+...|...++..|.+|++ ++.+.
T Consensus 337 ~~~~~~~~~~------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGS 384 (438)
T ss_dssp HHHHHHHHCC------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHH
T ss_pred HHHHHHHHcC------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchh
Confidence 8777666541 123 334447788899999999999989988843 45555
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAIL 230 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~ 230 (581)
++.. ...+|..++|.+.|++.+..| ++..|++..++.++..+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 5554 456999999999999999988 99999877655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=2.2e-11 Score=127.90 Aligned_cols=175 Identities=10% Similarity=0.007 Sum_probs=128.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC---ChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHL---PSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV 105 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 105 (581)
|.++...+..++....++....++|.|+.+.++. +..+.+...+...++..++.++.|+++||+ |||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444444444555555556788888766553 234456667777778888999999999998 999999888877
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020 106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185 (581)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 185 (581)
.+++.++.++. + +.+.+.+...+.+++.+...+....++.|.+|++. |++
T Consensus 299 ~~~~~~~~~~~---~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~ 348 (417)
T 2cfq_A 299 MSVRIIGSSFA---T---------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT 348 (417)
T ss_dssp HHHHHHHHTTC---C---------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred HHHHHHHHHHh---c---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence 77766555433 1 14556666667777766666777889999999888 999
Q ss_pred HHHH-HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020 186 FFSR-FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS 234 (581)
Q Consensus 186 ~~~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 234 (581)
+.++ ++...++|+.++|.++|++.+..|++..|.+.+++.+++.++.+.
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 9988 577888999999999999988888888888777766666555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.07 E-value=3.9e-10 Score=120.60 Aligned_cols=186 Identities=10% Similarity=-0.017 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-----HHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIA-----IFAT 104 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~-----~~~~ 104 (581)
..+.+.+..++....+......++.|..+.++.+..+.+.+.....+...++.++.|+++||+ |||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555556666666677778888999988888878888888888999999999999999998 9886544 5666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020 105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184 (581)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (581)
+..++.++......... .....+.+.+.+..++.+++.+...+...+++.|.+|++. |+
T Consensus 363 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g 421 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NS 421 (491)
T ss_dssp HHHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SS
T ss_pred HHHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence 66666555444311000 0011235667777888999999989999999999999999 99
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccc
Q 008020 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRR 238 (581)
Q Consensus 185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 238 (581)
++.++.+...++|..++|.+.+++.+. ++...|.+.+++.+++.++.+...++
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888764 66677776666655555555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.98 E-value=4e-09 Score=112.62 Aligned_cols=183 Identities=10% Similarity=0.026 Sum_probs=121.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020 30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG 109 (581)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 109 (581)
.........++..+..+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 334444444444444444444445556667788887777777788888999999999999999 9999999998888877
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020 110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR 189 (581)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 189 (581)
.+.+........ ........+.....+.+. +..|..+.+.+|.+|.+. |+++.++
T Consensus 356 ~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~ 410 (491)
T 4gc0_A 356 MFSLGTAFYTQA------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAI 410 (491)
T ss_dssp HHHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHH
T ss_pred HHHHHHHHhccc------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence 766554422111 011222222222223332 344677889999999999 9999999
Q ss_pred HHHHHHhhHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHHHcccc
Q 008020 190 FFFVISTGTLMAVTVLVYIQD------EVGRSWGYGICSICMFTAILIFLSGTRR 238 (581)
Q Consensus 190 ~~~~~~~g~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 238 (581)
.+....+|+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..|+
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 998899999998887766643 2345566776666666665555554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.84 E-value=8.2e-10 Score=113.65 Aligned_cols=164 Identities=12% Similarity=-0.011 Sum_probs=127.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH-HH
Q 008020 29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV-QT 107 (581)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~-~~ 107 (581)
|.++...+..++.....+.+..++|.|+++.+|++..+.+.+.+...++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4667777888888888888999999999988999999999999999999999999999999998 772 2333322 22
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020 108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187 (581)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (581)
.+..+...... ...+.+.+++..++.+++.+...+...++..|.+| ++ |+++.
T Consensus 276 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~ 328 (375)
T 2gfp_A 276 AGLLMWIPDWF--------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG 328 (375)
T ss_dssp TSSSSSHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred HHHHHHHHhhh--------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence 22221111100 00135666777888899999999999999999987 66 99999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHH
Q 008020 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICS 222 (581)
Q Consensus 188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~ 222 (581)
++.+...++|..++|.+.+.+.+..+|...+.+..
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999888777877776544
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.23 E-value=3.4e-06 Score=90.58 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=98.1
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhhhc-cccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 008020 372 ASLTVFFVAAILITLGAYDRLIIPL-LKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPIS 450 (581)
Q Consensus 372 ~~~~~~~~~~~i~~~~l~~~~~~~~-~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (581)
+.+.....++.++..++.+++.||+ ++|+ .+..+.++.+++.+...+. ..+
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----------~~~~~~~~~~~~~~~~~~~------------------~~~ 108 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYN----------TILWLSLIYCVGHAFLAIF------------------EHS 108 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHH----------HHHHHHHHHHHHHHHHHHT------------------SSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchH----------HHHHHHHHHHHHHHHHHHh------------------ccc
Confidence 4445556666777778888887766 5543 3666777777776665543 114
Q ss_pred ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH---HHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCC
Q 008020 451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL---FLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENI 527 (581)
Q Consensus 451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi---~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~ 527 (581)
.+.+++..++.|++.+...|...+++.|.+|++.|++..+. .+....+|..+++.+.+.+.+.
T Consensus 109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------------- 174 (524)
T 2xut_A 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-------------- 174 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--------------
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Confidence 45667778889999999999999999999999999877666 8888899999999887765421
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhh
Q 008020 528 NKGRLDCFYGLLAALSFINFGLFLLC 553 (581)
Q Consensus 528 ~~~~~~~~f~~~~~~~~i~~~~~~~~ 553 (581)
.++.+.|++.+++.++..++.++.
T Consensus 175 --~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 175 --FGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 123566777777666665555443
Done!