BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008021
         (581 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In
           Complex With Adp
 pdb|3P23|B Chain B, Crystal Structure Of The Human Kinase And Rnase Domains In
           Complex With Adp
 pdb|3P23|C Chain C, Crystal Structure Of The Human Kinase And Rnase Domains In
           Complex With Adp
 pdb|3P23|D Chain D, Crystal Structure Of The Human Kinase And Rnase Domains In
           Complex With Adp
          Length = 432

 Score = 29.6 bits (65), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 367 FMMSQVDLAREAAHLSRFIYNFRRWKDVSFPKPVYPLVHPAVLVETYEQGECVSRYVDEL 426
           F   +V L RE+      I  F   KD  F      L   A L E  EQ +     ++ +
Sbjct: 63  FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC-AATLQEYVEQKDFAHLGLEPI 121

Query: 427 QGHERLKSALAHIGTHALLKMLLVDNFIHADMHPGNILV 465
              ++  S LAH+  H+L       N +H D+ P NIL+
Sbjct: 122 TLLQQTTSGLAHL--HSL-------NIVHRDLKPHNILI 151


>pdb|1YHG|A Chain A, Uncyclized Precursor Structure Of S65g Y66s V68g Gfp
           Variant
 pdb|1YHG|B Chain B, Uncyclized Precursor Structure Of S65g Y66s V68g Gfp
           Variant
          Length = 239

 Score = 28.5 bits (62), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 402 PLVHPAVLVETYEQGECVSRYVDELQGHERLKSAL 436
           P+  P ++      G+C SRY D ++ H+  KSA+
Sbjct: 55  PVPWPTLVTTLGSGGQCFSRYPDHMKQHDFFKSAM 89


>pdb|4GF6|B Chain B, Crystal Structure Of Gfp With Cuprum Bound At The
           Incorporated Metal Chelating Amino Acid Pyz151
          Length = 246

 Score = 28.5 bits (62), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 408 VLVETYEQG-ECVSRYVDELQGHERLKSAL 436
            LV T+  G +C SRY D ++ H+  KSA+
Sbjct: 59  TLVTTFSYGVQCFSRYPDHMKAHDFFKSAM 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,912,466
Number of Sequences: 62578
Number of extensions: 602712
Number of successful extensions: 2104
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2103
Number of HSP's gapped (non-prelim): 3
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)