Query 008022
Match_columns 581
No_of_seqs 720 out of 2964
Neff 12.3
Searched_HMMs 46136
Date Thu Mar 28 18:26:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8.5E-74 1.8E-78 587.2 58.0 557 2-577 58-651 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.6E-72 5.7E-77 576.2 57.8 531 26-579 47-617 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5.6E-69 1.2E-73 539.3 65.2 519 27-552 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3.3E-68 7.2E-73 533.7 61.4 509 2-517 377-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 7.2E-63 1.6E-67 494.4 53.7 473 63-549 85-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.6E-61 5.6E-66 483.2 50.8 507 29-552 86-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-39 4.2E-44 343.6 69.2 556 5-579 339-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.9E-38 1.7E-42 331.3 69.2 558 5-580 305-866 (899)
9 PRK11447 cellulose synthase su 100.0 8.7E-30 1.9E-34 268.5 67.3 557 5-579 38-739 (1157)
10 PRK11447 cellulose synthase su 100.0 7.5E-28 1.6E-32 253.9 63.8 531 31-579 29-699 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 3.2E-25 6.8E-30 223.0 63.5 544 6-579 55-705 (987)
12 PRK09782 bacteriophage N4 rece 100.0 6.9E-24 1.5E-28 213.5 60.4 551 1-578 84-738 (987)
13 KOG2002 TPR-containing nuclear 100.0 7.3E-24 1.6E-28 199.4 49.9 557 11-578 146-743 (1018)
14 KOG2002 TPR-containing nuclear 100.0 7.8E-24 1.7E-28 199.2 48.4 531 5-545 174-745 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 7.1E-24 1.5E-28 189.6 38.8 447 103-567 51-506 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 5.2E-23 1.1E-27 184.1 38.6 440 68-526 51-500 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-20 2.5E-25 187.5 49.4 425 103-545 130-571 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-20 5.7E-25 185.0 49.1 429 33-508 130-570 (615)
19 PRK11788 tetratricopeptide rep 99.9 3.4E-21 7.4E-26 182.1 35.7 303 242-552 42-354 (389)
20 PRK15174 Vi polysaccharide exp 99.9 9E-20 2E-24 180.2 46.4 332 168-508 45-380 (656)
21 PRK11788 tetratricopeptide rep 99.9 5.9E-21 1.3E-25 180.5 35.5 295 277-579 42-346 (389)
22 PRK10049 pgaA outer membrane p 99.9 3.3E-19 7.2E-24 180.2 48.9 423 97-561 12-470 (765)
23 PRK15174 Vi polysaccharide exp 99.9 1.7E-19 3.7E-24 178.2 45.5 335 200-545 42-381 (656)
24 KOG2076 RNA polymerase III tra 99.9 3.7E-18 8E-23 160.4 50.3 354 4-362 148-548 (895)
25 PRK14574 hmsH outer membrane p 99.9 2.5E-18 5.4E-23 170.1 51.8 432 112-556 46-522 (822)
26 PRK10049 pgaA outer membrane p 99.9 1E-18 2.2E-23 176.7 47.9 414 27-474 12-456 (765)
27 PRK14574 hmsH outer membrane p 99.9 3.5E-18 7.7E-23 169.0 49.9 439 29-474 33-513 (822)
28 KOG0495 HAT repeat protein [RN 99.9 2.9E-15 6.2E-20 136.0 54.3 544 8-579 264-845 (913)
29 KOG0495 HAT repeat protein [RN 99.9 6E-16 1.3E-20 140.3 49.4 507 14-551 365-884 (913)
30 KOG4422 Uncharacterized conser 99.9 6.6E-17 1.4E-21 139.0 40.9 462 66-563 117-608 (625)
31 KOG4422 Uncharacterized conser 99.9 9.3E-17 2E-21 138.1 39.4 464 4-501 124-617 (625)
32 KOG2076 RNA polymerase III tra 99.9 1.6E-15 3.5E-20 142.9 49.5 367 31-402 140-553 (895)
33 KOG1915 Cell cycle control pro 99.8 5E-15 1.1E-19 129.3 46.3 382 8-403 86-499 (677)
34 KOG1915 Cell cycle control pro 99.8 2.5E-15 5.4E-20 131.2 44.0 435 63-508 71-535 (677)
35 KOG2003 TPR repeat-containing 99.8 2.7E-16 5.8E-21 136.5 35.5 485 68-576 204-718 (840)
36 KOG2003 TPR repeat-containing 99.8 7.1E-17 1.5E-21 140.0 32.0 479 28-531 199-709 (840)
37 KOG3785 Uncharacterized conser 99.7 2E-13 4.3E-18 115.0 36.4 490 37-564 29-534 (557)
38 TIGR00540 hemY_coli hemY prote 99.7 7E-15 1.5E-19 138.0 31.5 294 282-578 96-397 (409)
39 KOG0547 Translocase of outer m 99.7 3.4E-14 7.3E-19 124.7 32.3 223 315-544 336-565 (606)
40 PRK10747 putative protoheme IX 99.7 1.8E-14 4E-19 134.4 31.9 283 248-544 97-389 (398)
41 PF13429 TPR_15: Tetratricopep 99.7 5E-17 1.1E-21 145.0 13.0 262 310-579 13-276 (280)
42 KOG1173 Anaphase-promoting com 99.7 7.2E-13 1.6E-17 118.9 38.6 481 29-524 15-530 (611)
43 KOG2047 mRNA splicing factor [ 99.7 3.7E-11 8.1E-16 109.6 49.9 519 32-566 104-709 (835)
44 KOG1155 Anaphase-promoting com 99.7 3.1E-12 6.7E-17 111.9 41.3 369 174-562 173-551 (559)
45 PRK10747 putative protoheme IX 99.7 7.4E-14 1.6E-18 130.3 34.1 281 283-578 97-388 (398)
46 KOG1155 Anaphase-promoting com 99.7 1.7E-12 3.6E-17 113.6 38.6 364 195-576 159-532 (559)
47 PF13429 TPR_15: Tetratricopep 99.7 7.1E-17 1.5E-21 144.1 11.9 261 275-544 13-276 (280)
48 TIGR00540 hemY_coli hemY prote 99.7 4.8E-14 1E-18 132.4 31.4 292 7-331 96-396 (409)
49 KOG3785 Uncharacterized conser 99.7 2.1E-12 4.5E-17 109.0 36.4 456 72-554 29-497 (557)
50 KOG1173 Anaphase-promoting com 99.7 1.8E-12 3.9E-17 116.3 37.5 480 64-563 15-534 (611)
51 COG2956 Predicted N-acetylgluc 99.7 2.3E-13 5.1E-18 113.2 29.0 290 248-545 48-347 (389)
52 KOG4318 Bicoid mRNA stability 99.7 8.4E-13 1.8E-17 124.5 34.8 518 16-561 11-640 (1088)
53 KOG0547 Translocase of outer m 99.7 5.5E-13 1.2E-17 117.3 31.2 220 283-508 339-565 (606)
54 KOG1126 DNA-binding cell divis 99.7 2.2E-14 4.7E-19 131.2 23.1 279 285-577 334-617 (638)
55 KOG2047 mRNA splicing factor [ 99.7 5.5E-10 1.2E-14 102.2 49.1 516 3-534 110-712 (835)
56 COG3071 HemY Uncharacterized e 99.7 2.8E-12 6E-17 110.4 32.5 292 248-550 97-395 (400)
57 COG3071 HemY Uncharacterized e 99.6 2.3E-12 4.9E-17 110.9 30.9 285 283-578 97-388 (400)
58 COG2956 Predicted N-acetylgluc 99.6 1.6E-12 3.4E-17 108.4 28.9 287 282-579 47-346 (389)
59 KOG1126 DNA-binding cell divis 99.6 2E-13 4.3E-18 125.0 25.8 285 249-546 333-621 (638)
60 KOG4162 Predicted calmodulin-b 99.6 1.6E-10 3.4E-15 108.1 43.7 406 130-545 318-783 (799)
61 KOG1156 N-terminal acetyltrans 99.6 4.1E-10 8.9E-15 103.3 44.0 451 42-507 19-509 (700)
62 KOG1156 N-terminal acetyltrans 99.6 4.8E-10 1E-14 102.8 43.1 218 77-299 19-248 (700)
63 KOG1174 Anaphase-promoting com 99.6 9.9E-10 2.2E-14 95.2 39.5 309 247-566 208-519 (564)
64 KOG4318 Bicoid mRNA stability 99.5 2.4E-10 5.2E-15 108.4 35.8 90 52-153 12-101 (1088)
65 PF12569 NARP1: NMDA receptor- 99.5 3.9E-10 8.5E-15 106.2 37.5 293 34-333 8-333 (517)
66 KOG4162 Predicted calmodulin-b 99.5 3.2E-09 7E-14 99.6 42.6 404 94-509 317-783 (799)
67 KOG1129 TPR repeat-containing 99.5 2.6E-12 5.7E-17 107.2 19.2 232 309-550 227-461 (478)
68 KOG2376 Signal recognition par 99.5 3.5E-09 7.5E-14 96.3 39.8 454 32-508 14-519 (652)
69 PRK12370 invasion protein regu 99.5 1.2E-11 2.6E-16 120.9 26.7 215 321-544 277-501 (553)
70 KOG2376 Signal recognition par 99.5 2.7E-09 5.7E-14 97.0 37.8 120 72-194 19-139 (652)
71 KOG1174 Anaphase-promoting com 99.5 3.5E-09 7.6E-14 91.9 36.4 302 267-579 191-499 (564)
72 TIGR02521 type_IV_pilW type IV 99.5 2.6E-11 5.7E-16 106.2 24.6 196 342-542 33-229 (234)
73 PRK12370 invasion protein regu 99.5 3.6E-11 7.9E-16 117.6 27.4 251 285-545 276-535 (553)
74 KOG1129 TPR repeat-containing 99.5 1.1E-11 2.5E-16 103.5 19.4 234 274-516 227-462 (478)
75 TIGR02521 type_IV_pilW type IV 99.5 8E-11 1.7E-15 103.1 25.7 198 375-578 31-230 (234)
76 KOG1127 TPR repeat-containing 99.4 2.6E-09 5.7E-14 102.9 34.3 179 11-193 474-658 (1238)
77 KOG3617 WD40 and TPR repeat-co 99.4 5.3E-08 1.1E-12 92.2 41.1 360 29-435 725-1170(1416)
78 COG3063 PilF Tfp pilus assembl 99.4 4.6E-10 9.9E-15 89.6 22.9 203 31-238 36-243 (250)
79 KOG3616 Selective LIM binding 99.4 1.2E-08 2.6E-13 95.3 35.4 396 111-576 542-962 (1636)
80 PF12569 NARP1: NMDA receptor- 99.4 3.1E-09 6.8E-14 100.2 32.1 290 140-438 9-333 (517)
81 KOG0985 Vesicle coat protein c 99.4 2.5E-07 5.5E-12 89.7 43.4 129 29-161 605-750 (1666)
82 KOG4340 Uncharacterized conser 99.4 2.6E-09 5.6E-14 88.5 25.8 313 68-400 13-335 (459)
83 COG3063 PilF Tfp pilus assembl 99.4 1.7E-09 3.7E-14 86.4 23.6 208 342-556 37-245 (250)
84 KOG1127 TPR repeat-containing 99.3 3E-08 6.5E-13 95.9 34.6 153 5-161 502-656 (1238)
85 KOG0985 Vesicle coat protein c 99.3 1.1E-06 2.3E-11 85.6 46.6 183 375-577 1104-1305(1666)
86 KOG0548 Molecular co-chaperone 99.3 4.8E-08 1E-12 88.2 33.5 249 308-576 227-485 (539)
87 KOG3617 WD40 and TPR repeat-co 99.3 2.8E-07 6E-12 87.6 39.7 487 4-545 737-1359(1416)
88 KOG1840 Kinesin light chain [C 99.3 1.3E-09 2.7E-14 101.5 24.3 199 380-578 246-477 (508)
89 KOG0548 Molecular co-chaperone 99.3 7.8E-08 1.7E-12 86.9 34.2 426 4-475 11-456 (539)
90 PRK11189 lipoprotein NlpI; Pro 99.3 4.5E-09 9.8E-14 94.0 26.7 227 320-556 41-275 (296)
91 KOG3616 Selective LIM binding 99.3 2.2E-07 4.7E-12 87.2 37.2 216 174-432 715-930 (1636)
92 KOG1840 Kinesin light chain [C 99.3 4.1E-09 8.8E-14 98.2 25.4 237 307-543 201-477 (508)
93 PRK11189 lipoprotein NlpI; Pro 99.3 5.7E-09 1.2E-13 93.3 25.3 97 31-129 65-161 (296)
94 KOG4340 Uncharacterized conser 99.3 2.8E-08 6E-13 82.6 26.1 316 31-366 11-336 (459)
95 KOG0624 dsRNA-activated protei 99.2 1.8E-07 3.9E-12 79.5 29.5 307 205-545 43-370 (504)
96 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 3.8E-12 87.5 32.2 199 345-544 119-335 (355)
97 cd05804 StaR_like StaR_like; a 99.2 2.9E-07 6.2E-12 86.1 33.5 305 272-579 8-335 (355)
98 PRK04841 transcriptional regul 99.2 9.6E-06 2.1E-10 86.3 47.6 416 117-545 292-760 (903)
99 PF13041 PPR_2: PPR repeat fam 99.2 1.1E-10 2.4E-15 72.1 6.3 49 408-456 1-49 (50)
100 PF04733 Coatomer_E: Coatomer 99.2 6.8E-09 1.5E-13 91.2 19.4 148 384-544 111-264 (290)
101 KOG0624 dsRNA-activated protei 99.1 5.9E-07 1.3E-11 76.5 29.4 313 164-508 37-369 (504)
102 KOG1914 mRNA cleavage and poly 99.1 3.3E-06 7.2E-11 76.7 35.6 174 391-568 347-527 (656)
103 PF04733 Coatomer_E: Coatomer 99.1 7.3E-09 1.6E-13 91.0 19.1 256 242-516 8-269 (290)
104 PF13041 PPR_2: PPR repeat fam 99.1 1.2E-10 2.6E-15 71.9 5.5 49 98-146 1-49 (50)
105 PRK04841 transcriptional regul 99.1 1E-05 2.3E-10 86.0 46.0 368 141-508 347-759 (903)
106 KOG1125 TPR repeat-containing 99.1 5.1E-09 1.1E-13 95.1 15.6 219 315-544 295-526 (579)
107 KOG1125 TPR repeat-containing 99.1 2.6E-08 5.7E-13 90.7 19.3 218 4-228 294-526 (579)
108 KOG1128 Uncharacterized conser 99.0 6.9E-08 1.5E-12 90.4 20.8 219 338-579 396-615 (777)
109 KOG1914 mRNA cleavage and poly 99.0 2.7E-05 5.9E-10 71.0 41.5 210 321-532 309-526 (656)
110 KOG1070 rRNA processing protei 98.9 5.3E-07 1.2E-11 90.7 24.2 213 16-233 1445-1667(1710)
111 KOG1070 rRNA processing protei 98.9 1.2E-06 2.5E-11 88.4 26.3 243 323-573 1443-1692(1710)
112 KOG2053 Mitochondrial inherita 98.9 7E-05 1.5E-09 72.7 43.3 218 42-265 21-256 (932)
113 PLN02789 farnesyltranstransfer 98.9 1.4E-06 2.9E-11 77.9 24.6 203 353-563 50-267 (320)
114 COG5010 TadD Flp pilus assembl 98.9 3.9E-07 8.5E-12 74.9 18.6 165 372-543 64-229 (257)
115 PLN02789 farnesyltranstransfer 98.9 1.7E-06 3.7E-11 77.2 23.9 204 4-212 46-267 (320)
116 TIGR03302 OM_YfiO outer membra 98.9 4.3E-07 9.3E-12 79.1 19.7 187 339-545 32-232 (235)
117 PRK10370 formate-dependent nit 98.9 5E-07 1.1E-11 74.9 19.0 123 423-551 52-178 (198)
118 COG5010 TadD Flp pilus assembl 98.8 1.3E-06 2.8E-11 72.0 19.3 161 344-508 70-230 (257)
119 PRK15359 type III secretion sy 98.8 1.9E-07 4.1E-12 73.2 14.2 112 431-552 14-126 (144)
120 KOG1128 Uncharacterized conser 98.8 6.6E-07 1.4E-11 84.1 19.7 233 273-526 401-633 (777)
121 TIGR03302 OM_YfiO outer membra 98.8 6.5E-07 1.4E-11 77.9 18.8 184 375-580 33-232 (235)
122 PRK10370 formate-dependent nit 98.8 5.9E-07 1.3E-11 74.5 16.1 116 43-161 52-170 (198)
123 PRK15359 type III secretion sy 98.8 1E-06 2.2E-11 69.1 16.4 121 395-524 13-134 (144)
124 PRK14720 transcript cleavage f 98.8 9.6E-06 2.1E-10 81.1 26.4 146 375-527 116-268 (906)
125 PRK15179 Vi polysaccharide bio 98.7 2.8E-06 6.1E-11 84.0 22.4 148 406-559 82-230 (694)
126 KOG3081 Vesicle coat complex C 98.7 1.3E-05 2.8E-10 66.2 22.1 251 37-299 15-271 (299)
127 KOG3060 Uncharacterized conser 98.7 1.3E-05 2.8E-10 65.6 21.8 187 318-508 25-219 (289)
128 KOG2053 Mitochondrial inherita 98.7 0.00035 7.6E-09 68.1 42.2 516 5-543 19-606 (932)
129 KOG3060 Uncharacterized conser 98.7 2.8E-05 6.1E-10 63.8 22.7 190 282-475 24-221 (289)
130 KOG3081 Vesicle coat complex C 98.7 7.5E-06 1.6E-10 67.5 19.4 248 3-264 16-271 (299)
131 TIGR02552 LcrH_SycD type III s 98.7 1.3E-06 2.7E-11 68.5 14.9 115 432-553 5-120 (135)
132 COG4783 Putative Zn-dependent 98.7 3.2E-05 7E-10 69.8 24.3 151 380-554 311-462 (484)
133 PRK15179 Vi polysaccharide bio 98.7 2.3E-05 5E-10 77.7 25.8 182 371-563 82-267 (694)
134 PRK14720 transcript cleavage f 98.6 3.5E-05 7.5E-10 77.3 26.0 224 24-281 24-268 (906)
135 TIGR02552 LcrH_SycD type III s 98.6 3.2E-06 6.9E-11 66.2 14.8 116 397-518 5-120 (135)
136 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.3E-12 51.3 4.1 32 440-471 2-33 (34)
137 PF09976 TPR_21: Tetratricopep 98.5 1.3E-05 2.8E-10 63.3 15.7 116 423-542 24-144 (145)
138 COG4783 Putative Zn-dependent 98.5 4.4E-05 9.4E-10 69.1 20.2 110 75-187 316-430 (484)
139 PF12854 PPR_1: PPR repeat 98.5 3E-07 6.5E-12 50.6 3.9 32 95-126 2-33 (34)
140 COG4700 Uncharacterized protei 98.4 0.00012 2.7E-09 56.9 18.3 133 407-542 86-219 (251)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.6E-05 3.4E-10 72.6 15.7 126 377-508 171-296 (395)
142 PF09976 TPR_21: Tetratricopep 98.4 1.7E-05 3.7E-10 62.5 13.7 128 446-578 13-145 (145)
143 PRK15363 pathogenicity island 98.3 2.3E-05 4.9E-10 60.2 12.0 94 448-545 38-132 (157)
144 KOG0553 TPR repeat-containing 98.3 1.6E-05 3.5E-10 67.1 12.1 96 419-519 90-185 (304)
145 KOG2041 WD40 repeat protein [G 98.3 0.0035 7.6E-08 59.6 28.1 200 62-295 689-903 (1189)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.5E-05 1.2E-09 69.2 15.8 126 342-473 171-296 (395)
147 KOG2041 WD40 repeat protein [G 98.2 0.0031 6.7E-08 60.0 26.6 156 178-365 747-903 (1189)
148 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.5E-05 1.6E-09 56.9 13.9 99 447-545 4-105 (119)
149 PRK15363 pathogenicity island 98.2 0.00013 2.9E-09 56.1 14.5 104 410-515 35-138 (157)
150 PLN03088 SGT1, suppressor of 98.2 5.6E-05 1.2E-09 69.6 14.9 89 418-508 10-98 (356)
151 KOG0550 Molecular chaperone (D 98.2 0.00025 5.3E-09 62.8 17.1 258 245-508 59-349 (486)
152 PF12895 Apc3: Anaphase-promot 98.2 7.4E-06 1.6E-10 57.4 6.3 80 458-541 2-83 (84)
153 cd00189 TPR Tetratricopeptide 98.1 7.8E-05 1.7E-09 54.2 11.4 91 450-544 5-96 (100)
154 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.2E-05 1.3E-09 57.3 11.1 98 481-580 3-105 (119)
155 PRK02603 photosystem I assembl 98.1 0.00046 9.9E-09 56.4 16.6 113 447-566 37-166 (172)
156 cd00189 TPR Tetratricopeptide 98.1 0.00011 2.3E-09 53.4 11.8 94 413-508 3-96 (100)
157 CHL00033 ycf3 photosystem I as 98.1 0.00015 3.3E-09 59.0 13.5 95 445-542 35-139 (168)
158 KOG0553 TPR repeat-containing 98.1 7.4E-05 1.6E-09 63.2 11.4 97 384-484 90-186 (304)
159 PF07079 DUF1347: Protein of u 98.1 0.0089 1.9E-07 54.1 39.4 127 420-555 389-529 (549)
160 PF12895 Apc3: Anaphase-promot 98.0 1E-05 2.2E-10 56.7 5.3 81 8-90 2-83 (84)
161 PRK10153 DNA-binding transcrip 98.0 0.00054 1.2E-08 66.0 18.4 142 407-554 334-489 (517)
162 PLN03088 SGT1, suppressor of 98.0 0.00021 4.5E-09 65.9 14.9 86 455-544 12-98 (356)
163 PF05843 Suf: Suppressor of fo 98.0 0.0002 4.4E-09 63.4 14.2 131 412-544 3-135 (280)
164 COG4700 Uncharacterized protei 98.0 0.0025 5.5E-08 49.9 17.8 134 442-577 86-219 (251)
165 COG4235 Cytochrome c biogenesi 98.0 0.00055 1.2E-08 58.5 15.6 128 11-143 138-268 (287)
166 TIGR00756 PPR pentatricopeptid 98.0 1.9E-05 4.1E-10 44.4 4.5 33 167-199 2-34 (35)
167 PF12688 TPR_5: Tetratrico pep 98.0 0.00083 1.8E-08 50.0 14.2 94 451-544 7-103 (120)
168 PRK10866 outer membrane biogen 97.9 0.0034 7.4E-08 54.2 20.0 67 29-95 31-99 (243)
169 PF13432 TPR_16: Tetratricopep 97.9 5.5E-05 1.2E-09 49.9 7.0 56 486-544 3-59 (65)
170 TIGR00756 PPR pentatricopeptid 97.9 2.3E-05 4.9E-10 44.0 4.4 33 518-550 2-34 (35)
171 PF08579 RPM2: Mitochondrial r 97.9 0.00016 3.5E-09 51.3 9.2 80 33-112 28-116 (120)
172 PF10037 MRP-S27: Mitochondria 97.9 0.00025 5.5E-09 65.2 13.2 120 302-421 63-184 (429)
173 PRK10803 tol-pal system protei 97.9 0.00053 1.2E-08 59.5 14.6 104 447-552 145-251 (263)
174 PF14938 SNAP: Soluble NSF att 97.9 0.00091 2E-08 59.7 16.3 144 425-571 89-254 (282)
175 PF13414 TPR_11: TPR repeat; P 97.9 4.9E-05 1.1E-09 50.9 6.4 63 479-544 2-66 (69)
176 COG3898 Uncharacterized membra 97.9 0.016 3.4E-07 51.5 28.7 245 283-544 133-391 (531)
177 PF13812 PPR_3: Pentatricopept 97.9 2.4E-05 5.1E-10 43.5 4.0 33 101-133 2-34 (34)
178 PF13812 PPR_3: Pentatricopept 97.9 3.1E-05 6.7E-10 43.0 4.4 33 166-198 2-34 (34)
179 PRK02603 photosystem I assembl 97.9 0.00077 1.7E-08 55.1 14.4 88 29-117 34-123 (172)
180 PRK10866 outer membrane biogen 97.9 0.0051 1.1E-07 53.1 19.9 59 485-543 180-239 (243)
181 COG4235 Cytochrome c biogenesi 97.9 0.0018 3.9E-08 55.5 16.3 100 442-545 153-256 (287)
182 CHL00033 ycf3 photosystem I as 97.9 0.00052 1.1E-08 55.9 13.0 116 10-126 14-139 (168)
183 PF10037 MRP-S27: Mitochondria 97.8 0.00054 1.2E-08 63.1 13.9 124 335-458 61-186 (429)
184 PF14559 TPR_19: Tetratricopep 97.8 7.9E-05 1.7E-09 49.7 6.6 55 5-60 1-55 (68)
185 PF13414 TPR_11: TPR repeat; P 97.8 0.00013 2.7E-09 48.9 6.8 64 444-508 2-66 (69)
186 KOG2796 Uncharacterized conser 97.8 0.0056 1.2E-07 51.0 17.0 138 414-555 181-323 (366)
187 KOG0550 Molecular chaperone (D 97.8 0.021 4.5E-07 51.2 21.4 256 73-334 57-350 (486)
188 PRK10153 DNA-binding transcrip 97.7 0.0033 7.1E-08 60.8 18.0 141 372-519 334-489 (517)
189 PF13432 TPR_16: Tetratricopep 97.7 0.00016 3.5E-09 47.6 6.5 57 451-508 3-59 (65)
190 PF05843 Suf: Suppressor of fo 97.7 0.00099 2.2E-08 59.1 13.3 129 342-473 3-135 (280)
191 PF14938 SNAP: Soluble NSF att 97.7 0.0027 5.9E-08 56.6 16.1 21 244-264 205-225 (282)
192 PF12688 TPR_5: Tetratrico pep 97.7 0.0048 1E-07 46.0 14.4 92 417-508 8-103 (120)
193 PF14559 TPR_19: Tetratricopep 97.7 0.00022 4.7E-09 47.6 6.8 50 458-508 4-53 (68)
194 PF13371 TPR_9: Tetratricopept 97.6 0.00044 9.6E-09 46.9 7.6 61 488-553 3-64 (73)
195 PF08579 RPM2: Mitochondrial r 97.6 0.0014 3.1E-08 46.7 9.7 76 2-77 32-116 (120)
196 KOG1130 Predicted G-alpha GTPa 97.6 0.0011 2.4E-08 58.8 11.2 132 412-543 197-342 (639)
197 PRK15331 chaperone protein Sic 97.6 0.01 2.2E-07 46.2 15.0 89 453-544 45-133 (165)
198 KOG2114 Vacuolar assembly/sort 97.5 0.11 2.3E-06 51.3 26.8 179 32-226 336-516 (933)
199 PF03704 BTAD: Bacterial trans 97.5 0.0065 1.4E-07 48.1 14.0 71 482-555 64-140 (146)
200 COG3898 Uncharacterized membra 97.5 0.067 1.4E-06 47.7 31.4 282 212-508 96-391 (531)
201 PF01535 PPR: PPR repeat; Int 97.5 0.0002 4.4E-09 38.6 3.7 29 518-546 2-30 (31)
202 PF13525 YfiO: Outer membrane 97.5 0.022 4.8E-07 47.9 17.6 51 485-535 146-197 (203)
203 KOG1538 Uncharacterized conser 97.5 0.027 5.9E-07 53.4 19.1 99 103-225 559-657 (1081)
204 PF01535 PPR: PPR repeat; Int 97.5 0.00022 4.7E-09 38.5 3.6 29 167-195 2-30 (31)
205 PF13281 DUF4071: Domain of un 97.4 0.083 1.8E-06 48.1 21.1 31 515-545 304-334 (374)
206 PF13371 TPR_9: Tetratricopept 97.4 0.00091 2E-08 45.3 7.1 59 2-61 2-60 (73)
207 COG1729 Uncharacterized protei 97.4 0.0033 7.2E-08 53.2 11.6 98 447-545 144-244 (262)
208 PF13525 YfiO: Outer membrane 97.4 0.0077 1.7E-07 50.6 14.0 66 29-94 4-71 (203)
209 PRK10803 tol-pal system protei 97.4 0.0059 1.3E-07 53.2 13.1 98 412-510 145-247 (263)
210 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.11 2.4E-06 47.3 39.4 83 27-112 39-121 (660)
211 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.12 2.6E-06 47.1 34.5 146 410-562 397-546 (660)
212 PF13424 TPR_12: Tetratricopep 97.3 0.00093 2E-08 46.0 6.3 64 481-544 6-74 (78)
213 PF07079 DUF1347: Protein of u 97.3 0.13 2.9E-06 47.0 42.8 226 274-508 265-523 (549)
214 COG3118 Thioredoxin domain-con 97.3 0.027 5.9E-07 48.3 15.6 142 5-149 144-286 (304)
215 PRK15331 chaperone protein Sic 97.2 0.012 2.5E-07 45.9 12.0 90 417-508 44-133 (165)
216 KOG1538 Uncharacterized conser 97.2 0.11 2.3E-06 49.7 19.9 79 199-290 746-824 (1081)
217 KOG1130 Predicted G-alpha GTPa 97.2 0.0052 1.1E-07 54.7 10.7 134 200-333 195-343 (639)
218 PRK11906 transcriptional regul 97.2 0.043 9.3E-07 50.7 16.7 78 429-508 323-400 (458)
219 KOG2796 Uncharacterized conser 97.1 0.12 2.6E-06 43.4 19.2 139 378-520 180-323 (366)
220 KOG0543 FKBP-type peptidyl-pro 97.1 0.0071 1.5E-07 54.1 11.2 126 415-544 213-354 (397)
221 KOG1258 mRNA processing protei 97.1 0.26 5.6E-06 47.0 32.0 185 304-494 296-489 (577)
222 KOG0543 FKBP-type peptidyl-pro 97.1 0.013 2.8E-07 52.6 12.6 126 381-508 214-354 (397)
223 PF13512 TPR_18: Tetratricopep 97.1 0.014 3.1E-07 44.3 11.1 75 452-527 17-93 (142)
224 KOG2280 Vacuolar assembly/sort 97.1 0.32 7E-06 47.6 25.7 110 411-540 685-794 (829)
225 COG3118 Thioredoxin domain-con 97.1 0.057 1.2E-06 46.5 15.5 144 72-217 141-289 (304)
226 COG1729 Uncharacterized protei 97.1 0.0094 2E-07 50.6 10.7 90 40-129 151-244 (262)
227 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0074 1.6E-07 55.4 10.8 65 442-508 72-140 (453)
228 PF06239 ECSIT: Evolutionarily 97.0 0.017 3.7E-07 47.1 11.5 71 248-318 65-151 (228)
229 PF13512 TPR_18: Tetratricopep 97.0 0.043 9.3E-07 41.8 12.9 76 416-491 16-93 (142)
230 PF13424 TPR_12: Tetratricopep 97.0 0.0026 5.5E-08 43.8 6.1 63 446-508 6-74 (78)
231 KOG1258 mRNA processing protei 97.0 0.35 7.7E-06 46.1 33.3 98 376-474 298-395 (577)
232 PF13281 DUF4071: Domain of un 97.0 0.26 5.7E-06 44.9 19.7 31 199-229 304-334 (374)
233 KOG2610 Uncharacterized conser 96.9 0.063 1.4E-06 46.8 14.6 155 386-543 114-274 (491)
234 KOG1585 Protein required for f 96.9 0.065 1.4E-06 44.5 13.7 55 238-293 193-250 (308)
235 PF06239 ECSIT: Evolutionarily 96.9 0.035 7.5E-07 45.4 12.0 36 460-495 118-153 (228)
236 PF10300 DUF3808: Protein of u 96.9 0.07 1.5E-06 51.4 16.3 84 459-544 247-333 (468)
237 PF03704 BTAD: Bacterial trans 96.8 0.018 3.9E-07 45.5 10.4 57 415-472 67-123 (146)
238 KOG2114 Vacuolar assembly/sort 96.8 0.62 1.3E-05 46.4 25.3 173 3-191 342-516 (933)
239 PF04184 ST7: ST7 protein; In 96.7 0.18 3.9E-06 46.9 16.5 56 451-506 265-321 (539)
240 PF12921 ATP13: Mitochondrial 96.7 0.037 8.1E-07 41.7 10.3 79 446-524 3-96 (126)
241 KOG2280 Vacuolar assembly/sort 96.7 0.76 1.7E-05 45.2 31.0 104 310-432 689-792 (829)
242 PF12921 ATP13: Mitochondrial 96.6 0.067 1.4E-06 40.4 11.5 87 479-565 1-102 (126)
243 PF10300 DUF3808: Protein of u 96.6 0.21 4.5E-06 48.2 17.5 115 424-542 247-373 (468)
244 KOG4555 TPR repeat-containing 96.5 0.1 2.2E-06 38.5 11.0 53 5-58 53-105 (175)
245 PRK11906 transcriptional regul 96.5 0.32 7E-06 45.2 16.9 108 460-574 319-430 (458)
246 KOG2610 Uncharacterized conser 96.4 0.14 3.1E-06 44.7 13.4 156 350-508 113-275 (491)
247 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.058 1.2E-06 49.8 11.7 66 407-474 72-141 (453)
248 COG4649 Uncharacterized protei 96.4 0.25 5.4E-06 38.7 13.2 121 41-161 69-193 (221)
249 PF13428 TPR_14: Tetratricopep 96.4 0.015 3.2E-07 34.3 5.6 41 31-72 2-42 (44)
250 PF04840 Vps16_C: Vps16, C-ter 96.4 0.7 1.5E-05 41.8 30.7 102 276-397 183-284 (319)
251 COG0457 NrfG FOG: TPR repeat [ 96.4 0.62 1.3E-05 40.6 27.1 223 318-545 36-265 (291)
252 KOG2396 HAT (Half-A-TPR) repea 96.3 0.94 2E-05 42.3 37.6 100 442-544 456-558 (568)
253 PF13428 TPR_14: Tetratricopep 96.3 0.014 3.1E-07 34.4 4.9 26 483-508 4-29 (44)
254 PF04053 Coatomer_WDAD: Coatom 96.3 0.081 1.8E-06 50.1 12.2 129 102-258 297-425 (443)
255 PF04840 Vps16_C: Vps16, C-ter 96.3 0.86 1.9E-05 41.2 29.8 106 382-507 184-289 (319)
256 COG4105 ComL DNA uptake lipopr 96.2 0.68 1.5E-05 39.3 19.1 54 176-229 45-100 (254)
257 COG4105 ComL DNA uptake lipopr 96.1 0.71 1.5E-05 39.2 21.0 184 29-229 33-233 (254)
258 COG4785 NlpI Lipoprotein NlpI, 96.1 0.6 1.3E-05 38.3 14.4 89 39-129 74-162 (297)
259 KOG4555 TPR repeat-containing 96.1 0.13 2.9E-06 37.9 9.8 92 454-546 52-145 (175)
260 PF08631 SPO22: Meiosis protei 96.1 0.97 2.1E-05 40.3 25.0 166 376-543 85-273 (278)
261 KOG1941 Acetylcholine receptor 95.9 0.27 5.8E-06 43.6 12.4 24 519-542 249-272 (518)
262 COG0457 NrfG FOG: TPR repeat [ 95.8 1.1 2.5E-05 38.9 28.9 223 283-508 36-264 (291)
263 PF04053 Coatomer_WDAD: Coatom 95.8 0.25 5.5E-06 46.9 13.2 75 209-298 327-401 (443)
264 KOG2396 HAT (Half-A-TPR) repea 95.8 1.7 3.7E-05 40.7 41.2 244 252-508 299-558 (568)
265 PF09613 HrpB1_HrpK: Bacterial 95.7 0.47 1E-05 37.1 11.9 50 7-57 22-71 (160)
266 COG4649 Uncharacterized protei 95.6 0.82 1.8E-05 36.0 13.6 132 63-195 57-197 (221)
267 smart00299 CLH Clathrin heavy 95.5 0.89 1.9E-05 35.5 15.6 84 415-506 12-95 (140)
268 smart00299 CLH Clathrin heavy 95.4 0.96 2.1E-05 35.3 15.1 84 35-126 12-95 (140)
269 PF09205 DUF1955: Domain of un 95.3 0.87 1.9E-05 34.0 15.2 56 452-508 93-148 (161)
270 KOG0890 Protein kinase of the 95.3 7.2 0.00016 44.5 24.6 322 240-580 1388-1731(2382)
271 PF13431 TPR_17: Tetratricopep 95.2 0.019 4.1E-07 31.5 2.3 22 515-536 12-33 (34)
272 COG3629 DnrI DNA-binding trans 95.2 0.27 5.9E-06 42.8 10.3 61 446-507 154-214 (280)
273 KOG1941 Acetylcholine receptor 95.2 0.59 1.3E-05 41.6 12.0 167 413-579 86-274 (518)
274 PF09205 DUF1955: Domain of un 95.1 1 2.2E-05 33.7 13.0 59 346-405 92-150 (161)
275 KOG1585 Protein required for f 95.1 1.8 3.9E-05 36.4 18.7 25 273-297 34-58 (308)
276 PF13431 TPR_17: Tetratricopep 94.6 0.052 1.1E-06 29.7 3.0 32 18-50 2-33 (34)
277 COG1747 Uncharacterized N-term 94.6 4.2 9E-05 38.4 23.2 93 341-438 67-159 (711)
278 COG2909 MalT ATP-dependent tra 94.5 6.2 0.00014 40.2 25.6 82 110-191 425-523 (894)
279 PF00515 TPR_1: Tetratricopept 94.5 0.099 2.2E-06 28.5 4.1 27 518-544 3-29 (34)
280 PF00515 TPR_1: Tetratricopept 94.5 0.091 2E-06 28.7 3.9 28 481-508 2-29 (34)
281 PF13176 TPR_7: Tetratricopept 94.4 0.097 2.1E-06 29.1 3.9 26 518-543 1-26 (36)
282 PF13176 TPR_7: Tetratricopept 94.3 0.1 2.3E-06 29.0 3.8 26 482-507 1-26 (36)
283 PF07719 TPR_2: Tetratricopept 94.3 0.12 2.6E-06 28.1 4.1 27 518-544 3-29 (34)
284 PF02284 COX5A: Cytochrome c o 94.2 0.79 1.7E-05 32.4 8.5 80 29-109 7-88 (108)
285 PF07719 TPR_2: Tetratricopept 94.2 0.11 2.4E-06 28.3 3.9 28 481-508 2-29 (34)
286 KOG1920 IkappaB kinase complex 94.2 8.7 0.00019 40.6 23.9 133 310-470 913-1051(1265)
287 COG2976 Uncharacterized protei 94.2 2.5 5.4E-05 34.3 14.4 93 451-546 95-189 (207)
288 TIGR02561 HrpB1_HrpK type III 94.1 1.4 3E-05 33.9 10.4 50 8-58 23-72 (153)
289 PF08631 SPO22: Meiosis protei 94.0 4.2 9.1E-05 36.3 24.7 163 412-578 86-273 (278)
290 TIGR02561 HrpB1_HrpK type III 94.0 1.3 2.9E-05 34.0 10.2 102 446-552 8-113 (153)
291 PF06552 TOM20_plant: Plant sp 94.0 1.1 2.5E-05 35.7 10.2 112 426-548 7-139 (186)
292 COG3629 DnrI DNA-binding trans 93.9 0.9 1.9E-05 39.7 10.3 79 65-144 153-236 (280)
293 PF04184 ST7: ST7 protein; In 93.8 6.2 0.00013 37.4 17.0 67 409-475 258-325 (539)
294 KOG2066 Vacuolar assembly/sort 93.8 8.2 0.00018 38.7 26.8 165 5-193 366-533 (846)
295 PF10602 RPN7: 26S proteasome 93.6 0.85 1.8E-05 37.2 9.4 98 446-543 37-140 (177)
296 PF10602 RPN7: 26S proteasome 93.6 0.99 2.1E-05 36.8 9.7 98 31-128 37-141 (177)
297 KOG4234 TPR repeat-containing 93.4 1.6 3.4E-05 35.5 10.0 88 419-508 104-196 (271)
298 COG2909 MalT ATP-dependent tra 93.4 10 0.00022 38.8 26.0 226 350-576 425-684 (894)
299 KOG3941 Intermediate in Toll s 93.3 1.4 3E-05 37.9 10.1 34 287-320 140-173 (406)
300 PRK11619 lytic murein transgly 93.2 11 0.00024 38.4 38.6 118 283-403 254-374 (644)
301 PF09613 HrpB1_HrpK: Bacterial 93.1 3.6 7.8E-05 32.4 14.0 50 457-508 22-72 (160)
302 KOG4234 TPR repeat-containing 92.9 1.9 4.2E-05 35.0 9.8 89 385-474 105-197 (271)
303 PF07035 Mic1: Colon cancer-as 92.8 4.2 9.2E-05 32.5 14.9 31 53-83 17-47 (167)
304 PF06552 TOM20_plant: Plant sp 92.7 3.3 7.2E-05 33.2 10.8 107 391-508 7-135 (186)
305 KOG1920 IkappaB kinase complex 92.6 16 0.00035 38.8 27.1 54 452-508 972-1027(1265)
306 PF07035 Mic1: Colon cancer-as 92.4 4.7 0.0001 32.2 14.0 29 88-116 17-45 (167)
307 KOG2034 Vacuolar sorting prote 92.2 15 0.00033 37.6 22.4 49 168-225 507-555 (911)
308 KOG1586 Protein required for f 92.1 6.5 0.00014 33.1 15.0 20 489-508 163-182 (288)
309 COG4785 NlpI Lipoprotein NlpI, 92.0 6.2 0.00013 32.7 15.4 183 349-544 74-265 (297)
310 KOG3941 Intermediate in Toll s 92.0 3.8 8.3E-05 35.4 11.1 103 374-495 66-173 (406)
311 PF02259 FAT: FAT domain; Int 91.8 11 0.00024 35.1 24.8 66 373-438 144-212 (352)
312 PF13181 TPR_8: Tetratricopept 91.8 0.29 6.3E-06 26.6 3.2 26 483-508 4-29 (34)
313 PF04097 Nic96: Nup93/Nic96; 91.6 17 0.00037 36.9 18.5 16 561-576 515-530 (613)
314 COG3947 Response regulator con 91.5 9 0.00019 33.5 16.3 69 482-553 281-355 (361)
315 PF11207 DUF2989: Protein of u 91.5 5.7 0.00012 32.7 11.2 75 80-155 121-198 (203)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 91.5 3.6 7.8E-05 28.9 8.5 63 45-108 22-84 (103)
317 PF10345 Cohesin_load: Cohesin 91.4 18 0.0004 36.8 35.8 51 458-508 547-605 (608)
318 KOG0276 Vesicle coat complex C 91.1 2.2 4.9E-05 41.0 9.7 25 236-260 667-691 (794)
319 KOG1550 Extracellular protein 90.9 19 0.00041 36.1 26.8 272 251-545 228-538 (552)
320 PF13181 TPR_8: Tetratricopept 90.9 0.48 1E-05 25.7 3.5 28 517-544 2-29 (34)
321 KOG4648 Uncharacterized conser 90.6 0.59 1.3E-05 41.2 5.2 104 451-560 103-207 (536)
322 PF13174 TPR_6: Tetratricopept 90.4 0.6 1.3E-05 25.0 3.6 29 32-60 2-30 (33)
323 PF00637 Clathrin: Region in C 90.3 0.41 9E-06 37.6 4.0 53 72-124 14-66 (143)
324 PRK09687 putative lyase; Provi 90.3 13 0.00028 33.2 28.0 202 339-562 67-278 (280)
325 PF04097 Nic96: Nup93/Nic96; 90.2 23 0.0005 36.0 24.0 39 140-178 116-158 (613)
326 PF13374 TPR_10: Tetratricopep 90.1 0.78 1.7E-05 26.3 4.2 28 517-544 3-30 (42)
327 PF13929 mRNA_stabil: mRNA sta 90.1 9.5 0.00021 33.5 11.9 119 43-161 141-264 (292)
328 KOG1550 Extracellular protein 90.0 23 0.00049 35.6 25.3 272 216-508 228-537 (552)
329 PF13374 TPR_10: Tetratricopep 89.8 0.85 1.8E-05 26.2 4.2 28 481-508 3-30 (42)
330 PF13170 DUF4003: Protein of u 89.8 15 0.00032 33.1 20.0 128 182-311 79-223 (297)
331 PF11207 DUF2989: Protein of u 89.7 6.8 0.00015 32.3 10.2 21 515-535 177-197 (203)
332 KOG4570 Uncharacterized conser 89.7 9.3 0.0002 33.7 11.4 98 340-439 64-164 (418)
333 KOG4570 Uncharacterized conser 89.5 10 0.00022 33.6 11.4 104 229-334 58-164 (418)
334 KOG2471 TPR repeat-containing 89.3 7.7 0.00017 36.6 11.3 41 177-217 29-69 (696)
335 PF07721 TPR_4: Tetratricopept 89.3 0.71 1.5E-05 23.3 3.0 23 32-54 3-25 (26)
336 COG4455 ImpE Protein of avirul 89.2 8 0.00017 32.2 10.1 76 412-488 3-80 (273)
337 COG4455 ImpE Protein of avirul 89.2 2.7 6E-05 34.7 7.6 72 2-74 8-81 (273)
338 TIGR03504 FimV_Cterm FimV C-te 89.0 0.81 1.8E-05 26.8 3.4 23 522-544 5-27 (44)
339 KOG0530 Protein farnesyltransf 88.8 14 0.00031 31.7 18.6 168 6-177 54-233 (318)
340 KOG2471 TPR repeat-containing 88.7 22 0.00048 33.7 21.0 108 208-317 248-381 (696)
341 PF02284 COX5A: Cytochrome c o 88.6 7.1 0.00015 27.8 9.6 46 463-508 28-73 (108)
342 COG2976 Uncharacterized protei 88.3 13 0.00028 30.5 14.6 87 383-474 97-188 (207)
343 KOG4648 Uncharacterized conser 88.3 3.7 8E-05 36.5 8.3 91 382-474 104-194 (536)
344 PRK11619 lytic murein transgly 88.3 32 0.0007 35.1 37.8 54 312-366 319-372 (644)
345 KOG2063 Vacuolar assembly/sort 88.3 36 0.00079 35.7 22.6 56 3-58 315-374 (877)
346 KOG4642 Chaperone-dependent E3 87.9 11 0.00023 32.0 10.2 119 420-542 20-143 (284)
347 PF13174 TPR_6: Tetratricopept 87.7 0.85 1.8E-05 24.4 3.0 22 522-543 6-27 (33)
348 TIGR03504 FimV_Cterm FimV C-te 87.5 1.9 4.1E-05 25.3 4.3 25 35-59 4-28 (44)
349 PF13170 DUF4003: Protein of u 87.2 22 0.00048 32.0 20.0 145 392-539 79-240 (297)
350 PF02259 FAT: FAT domain; Int 87.2 26 0.00055 32.7 24.4 66 338-403 144-212 (352)
351 KOG2062 26S proteasome regulat 87.0 36 0.00079 34.3 39.2 40 34-73 63-103 (929)
352 COG3947 Response regulator con 86.8 21 0.00045 31.4 16.5 54 417-471 286-339 (361)
353 KOG2066 Vacuolar assembly/sort 86.2 41 0.00089 34.2 27.0 72 102-177 394-467 (846)
354 PF08424 NRDE-2: NRDE-2, neces 86.1 28 0.0006 32.0 16.3 119 427-547 48-185 (321)
355 PF07163 Pex26: Pex26 protein; 86.0 8.5 0.00018 33.4 9.0 93 31-123 84-181 (309)
356 KOG0686 COP9 signalosome, subu 85.8 30 0.00064 32.1 14.1 65 30-94 150-216 (466)
357 PF07163 Pex26: Pex26 protein; 85.7 12 0.00025 32.6 9.6 91 70-160 88-183 (309)
358 PRK10941 hypothetical protein; 85.4 15 0.00033 32.4 10.7 75 449-524 185-259 (269)
359 KOG0276 Vesicle coat complex C 84.9 21 0.00045 34.9 11.8 101 420-542 647-747 (794)
360 PF07575 Nucleopor_Nup85: Nup8 84.6 48 0.001 33.5 16.3 76 395-472 390-465 (566)
361 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 12 0.00026 26.4 9.0 47 462-508 24-70 (103)
362 PRK09687 putative lyase; Provi 84.3 30 0.00066 30.9 27.1 137 164-316 141-278 (280)
363 PF00637 Clathrin: Region in C 83.9 0.34 7.4E-06 38.0 0.1 51 39-89 16-66 (143)
364 PRK15180 Vi polysaccharide bio 83.7 41 0.00088 31.9 30.1 20 527-546 787-806 (831)
365 KOG4642 Chaperone-dependent E3 83.6 27 0.00058 29.8 11.5 85 6-92 21-105 (284)
366 PF09986 DUF2225: Uncharacteri 82.6 29 0.00063 29.5 11.8 65 482-546 120-195 (214)
367 smart00028 TPR Tetratricopepti 82.6 2.7 5.9E-05 21.7 3.6 23 485-507 6-28 (34)
368 KOG3364 Membrane protein invol 82.4 20 0.00043 27.4 9.8 66 443-508 30-99 (149)
369 PF10579 Rapsyn_N: Rapsyn N-te 82.4 4.1 8.9E-05 27.4 4.5 47 492-538 18-65 (80)
370 PF14853 Fis1_TPR_C: Fis1 C-te 82.1 5.3 0.00012 24.6 4.7 23 486-508 7-29 (53)
371 PF04190 DUF410: Protein of un 81.0 39 0.00084 29.8 13.6 26 479-504 89-114 (260)
372 smart00028 TPR Tetratricopepti 80.3 3.4 7.3E-05 21.3 3.4 27 518-544 3-29 (34)
373 TIGR02508 type_III_yscG type I 80.3 18 0.00039 25.8 7.1 48 76-129 50-97 (115)
374 PF14853 Fis1_TPR_C: Fis1 C-te 80.2 11 0.00023 23.3 5.6 38 520-559 5-42 (53)
375 PF10579 Rapsyn_N: Rapsyn N-te 79.9 6.8 0.00015 26.4 4.9 46 7-52 18-65 (80)
376 KOG1308 Hsp70-interacting prot 79.9 1.9 4.2E-05 38.3 3.1 90 457-550 126-216 (377)
377 PF12862 Apc5: Anaphase-promot 76.9 18 0.00039 25.7 7.0 23 486-508 47-69 (94)
378 TIGR02508 type_III_yscG type I 76.8 24 0.00053 25.2 8.8 84 461-553 21-104 (115)
379 PF13934 ELYS: Nuclear pore co 76.6 23 0.0005 30.4 8.7 115 37-162 85-199 (226)
380 KOG4077 Cytochrome c oxidase, 76.0 27 0.00059 26.1 7.4 46 463-508 67-112 (149)
381 COG1747 Uncharacterized N-term 75.9 79 0.0017 30.6 24.9 182 301-490 62-249 (711)
382 PF08424 NRDE-2: NRDE-2, neces 75.4 67 0.0015 29.5 18.5 121 393-515 49-189 (321)
383 PRK10941 hypothetical protein; 75.1 50 0.0011 29.2 10.5 78 483-563 184-263 (269)
384 PF07575 Nucleopor_Nup85: Nup8 74.9 1E+02 0.0022 31.3 17.3 23 32-54 150-172 (566)
385 KOG4507 Uncharacterized conser 74.8 28 0.0006 34.0 9.2 86 248-334 620-705 (886)
386 KOG0376 Serine-threonine phosp 74.6 9 0.00019 36.1 6.0 101 417-523 11-112 (476)
387 KOG2062 26S proteasome regulat 74.5 1.1E+02 0.0023 31.3 33.7 121 419-544 510-634 (929)
388 PRK13800 putative oxidoreducta 74.5 1.3E+02 0.0029 32.5 24.9 127 442-579 753-880 (897)
389 PF12862 Apc5: Anaphase-promot 74.4 21 0.00045 25.4 6.8 54 5-58 8-69 (94)
390 PF09670 Cas_Cas02710: CRISPR- 74.2 80 0.0017 29.9 12.5 56 383-439 139-198 (379)
391 PF09670 Cas_Cas02710: CRISPR- 74.1 38 0.00082 32.0 10.1 56 418-474 139-198 (379)
392 KOG1464 COP9 signalosome, subu 73.7 60 0.0013 28.2 23.6 51 247-297 39-92 (440)
393 KOG3364 Membrane protein invol 73.4 39 0.00084 25.9 10.4 66 477-544 29-99 (149)
394 PF09477 Type_III_YscG: Bacter 72.4 29 0.00064 25.1 6.6 78 44-129 20-98 (116)
395 KOG4507 Uncharacterized conser 72.1 42 0.00091 32.9 9.6 88 386-474 618-705 (886)
396 KOG4077 Cytochrome c oxidase, 72.0 40 0.00086 25.4 9.0 47 48-94 67-113 (149)
397 COG0790 FOG: TPR repeat, SEL1 71.8 77 0.0017 28.6 21.1 148 352-508 53-219 (292)
398 PF11817 Foie-gras_1: Foie gra 70.8 19 0.00041 31.5 7.0 58 484-541 182-243 (247)
399 PF14561 TPR_20: Tetratricopep 70.6 34 0.00074 24.1 9.1 62 18-80 11-73 (90)
400 PF09477 Type_III_YscG: Bacter 70.4 39 0.00084 24.6 7.4 77 461-545 22-98 (116)
401 PF14689 SPOB_a: Sensor_kinase 70.1 17 0.00037 23.3 4.9 47 10-58 5-51 (62)
402 PF14689 SPOB_a: Sensor_kinase 69.8 26 0.00056 22.5 5.7 26 447-472 25-50 (62)
403 KOG0890 Protein kinase of the 69.1 2.5E+02 0.0055 33.5 33.1 63 305-370 1670-1732(2382)
404 PF05944 Phage_term_smal: Phag 69.1 46 0.001 25.5 7.7 45 17-61 35-79 (132)
405 PF11846 DUF3366: Domain of un 68.9 22 0.00047 29.7 6.8 33 512-544 140-172 (193)
406 KOG1586 Protein required for f 68.8 74 0.0016 27.2 21.8 19 421-439 165-183 (288)
407 cd08819 CARD_MDA5_2 Caspase ac 68.7 36 0.00079 23.6 6.7 41 16-57 23-63 (88)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 68.7 43 0.00094 25.5 7.6 43 534-576 81-124 (126)
409 PRK12798 chemotaxis protein; R 67.8 1.1E+02 0.0024 28.9 16.7 229 342-577 83-321 (421)
410 PF10366 Vps39_1: Vacuolar sor 67.2 34 0.00074 25.1 6.6 26 168-193 42-67 (108)
411 PF00244 14-3-3: 14-3-3 protei 67.0 67 0.0015 27.8 9.4 58 380-437 6-64 (236)
412 COG0790 FOG: TPR repeat, SEL1 66.8 98 0.0021 27.9 22.9 166 316-494 52-236 (292)
413 KOG0551 Hsp90 co-chaperone CNS 66.3 42 0.00092 30.2 7.9 97 445-544 81-181 (390)
414 PF04910 Tcf25: Transcriptiona 66.2 1.2E+02 0.0025 28.5 20.9 57 207-263 110-167 (360)
415 PF00244 14-3-3: 14-3-3 protei 66.0 89 0.0019 27.1 10.6 35 346-380 7-41 (236)
416 PF09986 DUF2225: Uncharacteri 65.8 84 0.0018 26.7 11.7 52 462-513 142-198 (214)
417 COG4259 Uncharacterized protei 65.2 47 0.001 23.6 6.7 53 464-519 56-108 (121)
418 PF02184 HAT: HAT (Half-A-TPR) 64.9 15 0.00034 19.7 3.2 13 496-508 3-15 (32)
419 KOG0687 26S proteasome regulat 64.2 1.1E+02 0.0024 27.6 13.3 96 446-544 105-209 (393)
420 cd00280 TRFH Telomeric Repeat 63.5 69 0.0015 26.1 7.9 48 426-473 85-139 (200)
421 PF11846 DUF3366: Domain of un 63.3 44 0.00096 27.8 7.6 32 477-508 141-172 (193)
422 COG0735 Fur Fe2+/Zn2+ uptake r 63.3 15 0.00032 28.8 4.4 67 16-83 7-73 (145)
423 PF10345 Cohesin_load: Cohesin 62.9 1.9E+02 0.0041 29.7 43.1 61 483-544 538-605 (608)
424 cd08819 CARD_MDA5_2 Caspase ac 62.9 49 0.0011 23.0 6.9 14 114-127 50-63 (88)
425 KOG2422 Uncharacterized conser 62.4 1.7E+02 0.0036 29.0 16.9 143 8-150 251-431 (665)
426 COG4941 Predicted RNA polymera 62.2 1.3E+02 0.0027 27.5 10.5 125 424-554 270-401 (415)
427 KOG2063 Vacuolar assembly/sort 62.1 2.2E+02 0.0048 30.3 19.1 116 32-147 506-638 (877)
428 KOG1464 COP9 signalosome, subu 62.1 1.1E+02 0.0024 26.8 18.1 25 204-228 149-173 (440)
429 PF04910 Tcf25: Transcriptiona 62.0 1.4E+02 0.0031 28.0 21.9 28 339-366 39-66 (360)
430 PF14561 TPR_20: Tetratricopep 61.3 55 0.0012 23.1 9.0 31 478-508 20-50 (90)
431 COG0735 Fur Fe2+/Zn2+ uptake r 61.2 47 0.001 26.1 6.8 63 53-116 9-71 (145)
432 cd00280 TRFH Telomeric Repeat 61.1 83 0.0018 25.7 7.9 21 418-438 119-139 (200)
433 PF13929 mRNA_stabil: mRNA sta 60.2 1.3E+02 0.0027 26.9 21.6 116 250-365 143-263 (292)
434 KOG0376 Serine-threonine phosp 59.7 24 0.00051 33.5 5.6 107 381-492 10-117 (476)
435 PF15297 CKAP2_C: Cytoskeleton 59.7 1.4E+02 0.003 27.4 10.0 64 496-562 119-186 (353)
436 KOG0551 Hsp90 co-chaperone CNS 59.5 94 0.002 28.2 8.7 97 411-508 82-181 (390)
437 KOG0403 Neoplastic transformat 59.5 1.6E+02 0.0036 28.0 31.3 62 413-475 512-573 (645)
438 COG4976 Predicted methyltransf 59.1 31 0.00067 29.2 5.5 52 456-508 6-57 (287)
439 PRK15180 Vi polysaccharide bio 58.5 1.8E+02 0.0038 28.0 28.8 20 491-510 787-806 (831)
440 KOG0128 RNA-binding protein SA 58.2 2.4E+02 0.0052 29.4 33.4 51 423-474 475-526 (881)
441 KOG1498 26S proteasome regulat 58.2 1.6E+02 0.0035 27.5 13.8 47 43-89 25-76 (439)
442 KOG2422 Uncharacterized conser 58.0 2E+02 0.0044 28.5 18.2 114 113-226 251-404 (665)
443 smart00386 HAT HAT (Half-A-TPR 57.7 26 0.00056 18.1 4.3 27 45-72 2-28 (33)
444 PF11848 DUF3368: Domain of un 57.2 40 0.00087 20.2 4.9 35 525-559 11-45 (48)
445 KOG2659 LisH motif-containing 56.9 91 0.002 26.5 7.9 103 441-544 22-131 (228)
446 KOG4521 Nuclear pore complex, 55.8 3.1E+02 0.0068 30.1 14.2 138 32-182 922-1071(1480)
447 KOG0292 Vesicle coat complex C 55.7 2.1E+02 0.0045 30.2 11.3 127 42-193 655-781 (1202)
448 KOG0545 Aryl-hydrocarbon recep 55.5 1.4E+02 0.003 25.9 10.8 57 451-508 236-292 (329)
449 PF11848 DUF3368: Domain of un 55.1 44 0.00096 20.0 5.2 34 40-73 12-45 (48)
450 KOG1308 Hsp70-interacting prot 54.3 11 0.00023 33.9 2.4 92 41-135 125-217 (377)
451 COG4941 Predicted RNA polymera 53.7 1.8E+02 0.0039 26.6 13.4 116 389-508 270-393 (415)
452 PF11663 Toxin_YhaV: Toxin wit 53.6 15 0.00033 27.8 2.8 33 526-560 105-137 (140)
453 PRK13184 pknD serine/threonine 53.0 3.3E+02 0.0072 29.5 26.9 326 170-508 480-868 (932)
454 KOG3807 Predicted membrane pro 52.9 1.8E+02 0.0039 26.4 13.6 58 451-508 281-339 (556)
455 PF11838 ERAP1_C: ERAP1-like C 52.6 1.9E+02 0.0041 26.6 16.1 79 48-129 148-230 (324)
456 PF11817 Foie-gras_1: Foie gra 52.0 1.1E+02 0.0024 26.8 8.4 58 449-506 182-244 (247)
457 cd07153 Fur_like Ferric uptake 51.8 32 0.00069 25.6 4.4 47 36-82 6-52 (116)
458 COG4259 Uncharacterized protei 51.7 86 0.0019 22.4 6.4 38 18-55 60-97 (121)
459 PF13838 Clathrin_H_link: Clat 51.3 67 0.0015 21.0 6.3 59 29-88 5-63 (66)
460 KOG0545 Aryl-hydrocarbon recep 50.9 1.7E+02 0.0036 25.4 9.7 90 4-94 187-293 (329)
461 PRK10564 maltose regulon perip 50.8 44 0.00096 29.7 5.5 43 512-554 252-295 (303)
462 KOG4567 GTPase-activating prot 50.7 1.8E+02 0.004 26.1 8.9 69 120-188 263-341 (370)
463 PF10255 Paf67: RNA polymerase 50.6 96 0.0021 29.4 8.0 100 408-507 70-191 (404)
464 PF13762 MNE1: Mitochondrial s 49.8 1.3E+02 0.0027 23.7 9.4 97 51-147 23-127 (145)
465 PF01475 FUR: Ferric uptake re 49.6 28 0.00061 26.1 3.9 52 32-83 9-60 (120)
466 COG5187 RPN7 26S proteasome re 49.6 1.9E+02 0.0041 25.7 12.5 65 446-510 116-185 (412)
467 TIGR02270 conserved hypothetic 49.6 2.5E+02 0.0053 27.0 25.0 233 37-297 45-279 (410)
468 PRK13184 pknD serine/threonine 48.9 3.9E+02 0.0084 29.1 24.9 90 3-94 483-581 (932)
469 PHA02537 M terminase endonucle 48.7 1.8E+02 0.0038 25.1 8.6 22 419-440 92-113 (230)
470 PRK10564 maltose regulon perip 47.9 54 0.0012 29.2 5.6 30 448-477 260-289 (303)
471 PF03745 DUF309: Domain of unk 45.9 80 0.0017 20.3 5.2 14 43-56 12-25 (62)
472 PRK13342 recombination factor 45.6 2.9E+02 0.0062 26.7 16.7 152 425-579 152-333 (413)
473 KOG0686 COP9 signalosome, subu 45.1 2.7E+02 0.0059 26.3 14.6 64 271-334 151-216 (466)
474 PRK13800 putative oxidoreducta 45.0 4.5E+02 0.0097 28.7 29.6 261 268-561 633-894 (897)
475 KOG1839 Uncharacterized protei 44.1 3.5E+02 0.0075 30.1 11.5 102 27-128 970-1085(1236)
476 PF09454 Vps23_core: Vps23 cor 43.7 72 0.0016 20.8 4.4 29 447-475 10-38 (65)
477 PF12926 MOZART2: Mitotic-spin 43.6 1.1E+02 0.0024 21.3 7.1 43 86-128 29-71 (88)
478 PF10475 DUF2450: Protein of u 43.0 2.6E+02 0.0055 25.3 10.4 24 70-93 132-155 (291)
479 PRK11639 zinc uptake transcrip 42.7 1.3E+02 0.0028 24.4 6.8 47 70-116 30-76 (169)
480 PRK11639 zinc uptake transcrip 42.5 1.5E+02 0.0032 24.1 7.1 46 170-215 30-75 (169)
481 PF03745 DUF309: Domain of unk 42.3 92 0.002 20.0 5.4 49 75-123 9-62 (62)
482 KOG4567 GTPase-activating prot 41.6 2E+02 0.0044 25.9 7.9 44 465-508 263-306 (370)
483 COG3107 LppC Putative lipoprot 41.4 3.6E+02 0.0078 26.6 10.5 63 35-98 68-132 (604)
484 PRK06645 DNA polymerase III su 41.4 3.7E+02 0.0081 26.8 11.2 46 426-473 189-235 (507)
485 PF09454 Vps23_core: Vps23 cor 41.2 79 0.0017 20.6 4.3 49 408-457 6-54 (65)
486 COG5191 Uncharacterized conser 41.0 88 0.0019 28.0 5.7 68 62-130 104-172 (435)
487 PF07720 TPR_3: Tetratricopept 40.8 66 0.0014 17.9 3.8 23 32-54 3-25 (36)
488 KOG2908 26S proteasome regulat 40.7 2.9E+02 0.0064 25.3 9.1 55 454-508 84-143 (380)
489 KOG2908 26S proteasome regulat 40.6 2.9E+02 0.0064 25.3 9.4 54 385-438 85-143 (380)
490 COG5108 RPO41 Mitochondrial DN 39.8 2E+02 0.0043 29.1 8.4 86 140-228 33-131 (1117)
491 KOG0991 Replication factor C, 39.4 2.5E+02 0.0055 24.2 11.4 47 197-245 236-282 (333)
492 PF11663 Toxin_YhaV: Toxin wit 37.9 60 0.0013 24.8 3.8 30 112-143 107-136 (140)
493 KOG0991 Replication factor C, 37.6 2.7E+02 0.0059 24.1 12.9 91 420-514 169-271 (333)
494 PRK12798 chemotaxis protein; R 37.3 3.7E+02 0.0081 25.6 21.3 50 318-367 125-175 (421)
495 PRK09462 fur ferric uptake reg 37.0 2.1E+02 0.0045 22.6 7.1 60 436-496 8-68 (148)
496 COG5191 Uncharacterized conser 36.6 1.2E+02 0.0027 27.2 5.9 65 409-474 106-171 (435)
497 KOG1839 Uncharacterized protei 36.5 3.6E+02 0.0079 30.0 10.3 125 37-161 939-1083(1236)
498 PHA02537 M terminase endonucle 36.1 2.9E+02 0.0062 23.9 10.3 30 378-407 86-115 (230)
499 PRK09462 fur ferric uptake reg 36.0 1.7E+02 0.0036 23.1 6.4 46 35-80 21-67 (148)
500 COG5159 RPN6 26S proteasome re 35.9 3.2E+02 0.0069 24.4 18.1 51 276-326 9-66 (421)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.5e-74 Score=587.20 Aligned_cols=557 Identities=20% Similarity=0.309 Sum_probs=478.3
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHH-----------------------------------HHHHHHHHcCCH
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFI-----------------------------------SVINSYRRVGLA 46 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------------------------~l~~~~~~~g~~ 46 (581)
+.+|.+.|++++|..+|+.+.+.|++|+..+|. .++..|.+.|+.
T Consensus 58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~ 137 (857)
T PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL 137 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCh
Confidence 567777788888888888777776666666554 445555666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 008022 47 EQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEM 126 (581)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (581)
+.|.++|+.|.. ||..+|+.++.+|++.|++++|..+|++|...|+.||..+|+.++.+|...+++..+.+++..+
T Consensus 138 ~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 138 VHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred HHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 666666666653 6667777777777777777777777777777777778788888887777777777777777777
Q ss_pred hhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH
Q 008022 127 GNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYST 205 (581)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (581)
.+.|+.||..+++.++.+|++.|+++.|..+|+++ .++..+||.++.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 77788888888899999999999999999999999 67889999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 008022 206 IISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGS 285 (581)
Q Consensus 206 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (581)
++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999986 3688999999999999999
Q ss_pred hhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 008022 286 MDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEK 365 (581)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 365 (581)
+++|.++|++|.+.++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH
Q 008022 366 MAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 445 (581)
|.. ++..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.++.
T Consensus 450 m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 450 IPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred CCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 863 5778999999999999999999999999976 57899999999999888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHH
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWG 525 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 525 (581)
.+++.++..|++.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+ .|+.||..+|+.++.+
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLLCA 598 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHHHH
Confidence 88888888888888888888777765 46777888888888888888888888888776 5677888888888888
Q ss_pred HHccCCHHHHHHHHHHHH-HcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022 526 ICNSGGMQEAFIYLQKML-NEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI 577 (581)
Q Consensus 526 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 577 (581)
|.+.|++++|.++|++|. +.|+.|+..+|..++..+.+.|+.++|.+++++|
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 888888888888888887 5677788888888888888888888888877765
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-72 Score=576.17 Aligned_cols=531 Identities=21% Similarity=0.282 Sum_probs=467.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----------------------------------
Q 008022 26 VSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHI---------------------------------- 71 (581)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---------------------------------- 71 (581)
.+++...++.++..+.+.|++++|..+|+.|...|..|+..+|..+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 4578889999999999999999999999999988877777766444
Q ss_pred -HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCC
Q 008022 72 -LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQ 150 (581)
Q Consensus 72 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (581)
+..|++.|+.+.|.++|++|. +||..+|+.+|.+|.+.|++++|+++|++|...|+.||..||+.++.++...++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 455556666666666666665 467777777777777778888888888888777777888888888888777777
Q ss_pred HHHHHHHHHHh-----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022 151 VEEARELAMRF-----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQ 225 (581)
Q Consensus 151 ~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 225 (581)
+..+.+++..+ .++..++|.|+.+|++.|++++|..+|++|.. ||..+|+.+|.+|++.|++++|.++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777776665 56778888889999999999999999988853 5888899999999999999999999999
Q ss_pred HHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH
Q 008022 226 MFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV 305 (581)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 305 (581)
|.+.|+.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. ||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 9988999999999999999999999999999999999989999999999999999999999999999988863 578
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 008022 306 TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGL 385 (581)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (581)
.+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+++.++.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 88999999999999999999999999888999999999999999999999999999999999999889999999999999
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHH
Q 008022 386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAF 465 (581)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 465 (581)
++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. +++||..+|+.++.+|++.|+.+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 999999999999998865 6788999999999999999999999999986 48999999999999999999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 466 QLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.+ .||..+|+.++.+|.+.|+.++|+++|++|.+.
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999886 389999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 546 GICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 546 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
|+.||..+|..++.+|.+.|..++|.++++.|.+
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999874
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-69 Score=539.32 Aligned_cols=519 Identities=20% Similarity=0.301 Sum_probs=466.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH
Q 008022 27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGL-KPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNI 105 (581)
Q Consensus 27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 105 (581)
.++...+..++..+.+.|++++|+++|++|...++ .++...+..++..|.+.|..+.|..+|+.|. .|+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHH
Confidence 35777888888888899999999999999998775 3566677788889999999999999998887 388999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-----CCCcchHHHHHHHHHhcCC
Q 008022 106 LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-----GSGVSVYNALINGLCKEHK 180 (581)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~~~ 180 (581)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+++ .++..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999988 5788899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHH--cCCCCCcccHHHHHHHHHccCCHHHHHHHH
Q 008022 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFV--RGCNPNIHSFTSLLKGYLLGGRTHEASDLW 258 (581)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (581)
+++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008022 259 NRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSP 338 (581)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 338 (581)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022 339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLD 418 (581)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 418 (581)
|..+|+.++.+|++.|++++|..+|++|...++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999899999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCC
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----A-------------------GMVVEAFQLLGKMLIEG 475 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~ 475 (581)
+|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999998865432 1 12467999999999999
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
+.||..+|+.++.++...+..+.+..+++.+.. .+..|+..+|+.++.++.+. .++|..++++|...|+.|+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999888889999999999988876 45678899999999998432 368999999999999999874
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-68 Score=533.71 Aligned_cols=509 Identities=18% Similarity=0.270 Sum_probs=482.4
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGV-SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR 80 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (581)
+..|.+.|++++|.++|+.|.+.|+ +++...+..++..|.+.|..++|..+|..|.. |+..+|+.++.+|++.|+
T Consensus 377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence 4567888999999999999999885 45777788899999999999999999998875 999999999999999999
Q ss_pred cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHH
Q 008022 81 FSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMR 160 (581)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (581)
++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 008022 161 F-----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVD--RGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNP 233 (581)
Q Consensus 161 ~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (581)
+ .|+..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 8 68899999999999999999999999999986 5789999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHH
Q 008022 234 NIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID 313 (581)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (581)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|++|+..+|+.++.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHH
Q 008022 314 GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDW 393 (581)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 393 (581)
+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCCcccHHHHHH
Q 008022 394 AMKLLDQMKQYECLPNITTYNELLDGLLR----V-------------------NRVKEAFELVTEIEKCGIQLNIVTYNT 450 (581)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (581)
|.+++..|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+.|+.||..+|+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999865432 1 124679999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII 517 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 517 (581)
++.++++.+....+..+++.+...+..|+..+|+.++.++.+. .++|..+++.|.. .|+.|+..
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~-~Gi~p~~~ 916 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS-LGVVPSVS 916 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH-cCCCCCcc
Confidence 9998889999999999999998888899999999999988432 4689999999999 67888764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.2e-63 Score=494.41 Aligned_cols=473 Identities=19% Similarity=0.289 Sum_probs=452.5
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHH
Q 008022 63 PTVKIYNHILDALLAENRFSMINPIYSNMKRDG-MEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTI 141 (581)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (581)
.+...|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345589999999999999999999999998764 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHh-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHH
Q 008022 142 VSSICKLGQVEEARELAMRF-GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSL 220 (581)
Q Consensus 142 ~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 220 (581)
+.+|++.|+++.|.++|+++ .++..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+++..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 008022 221 GILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300 (581)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (581)
+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|+.++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999864 589999999999999999999999999999999
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHH
Q 008022 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNT 380 (581)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 380 (581)
+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+++.++.+|++.|++++|..+|++|. .+|..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 468899999
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHhcC
Q 008022 381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEK-CGIQLNIVTYNTILHGVCRAG 459 (581)
Q Consensus 381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 459 (581)
++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++..|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 589999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHH
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 538 (581)
++++|.++++++ +..|+..+|+.++.+|...|+++.|..+++++.+ +.| +..+|..++..|.+.|++++|.++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 999999998876 4689999999999999999999999999999987 567 567999999999999999999999
Q ss_pred HHHHHHcCCCC
Q 008022 539 LQKMLNEGICP 549 (581)
Q Consensus 539 ~~~~~~~~~~~ 549 (581)
+++|.+.|+.+
T Consensus 551 ~~~m~~~g~~k 561 (697)
T PLN03081 551 VETLKRKGLSM 561 (697)
T ss_pred HHHHHHcCCcc
Confidence 99999998753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-61 Score=483.20 Aligned_cols=507 Identities=17% Similarity=0.257 Sum_probs=462.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFG-LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILL 107 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (581)
+...|..++..+.+.|++++|+++|++|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44578999999999999999999999998754 67999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-----CCCcchHHHHHHHHHhcCChh
Q 008022 108 KALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-----GSGVSVYNALINGLCKEHKIE 182 (581)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~ 182 (581)
..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|+++ .++..+|+.++.++...|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999974 69999999999999999999999999998 678899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 183 EAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMI 262 (581)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (581)
.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 4689999999999999999999999999999
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 008022 263 REGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVA 342 (581)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 342 (581)
+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|++|+..+++.++.+|++.|++++|.++|+.|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864 79999
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhh-CCCCCChhhHHHHHHHHH
Q 008022 343 YTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ-YECLPNITTYNELLDGLL 421 (581)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 421 (581)
|+.++.+|++.|+.++|.++|++|...|+.||..+|+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++.+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999975 689999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 008022 422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ 501 (581)
Q Consensus 422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 501 (581)
+.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++...+ +.+..+|..+++.|++.|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999998876 478999999999999999999999999999997653 3357789999999999999999999
Q ss_pred HHHHHhcCCCCCC-CHHhHHHHH---HHHH----c----cCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 502 LLDRIRGGGEWNP-DIISYTSLL---WGIC----N----SGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 502 ~~~~~~~~~~~~p-~~~~~~~l~---~~~~----~----~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
+++.|.+.+ +.+ ...+|..+. ..+. . ..-++...++..+|.+.|..|+..
T Consensus 550 v~~~m~~~g-~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 550 VVETLKRKG-LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcC-CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999844 433 333332211 0000 0 112345567788888889888753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-39 Score=343.64 Aligned_cols=556 Identities=14% Similarity=0.075 Sum_probs=404.2
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI 84 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (581)
+.+.|++++|...++.+...++ .+...+..+...+...|++++|.+.|+++....+ .+...+..+...+...|++++|
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHH
Confidence 3344444555554444444322 2444445555555555555555555555544332 3344444445555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---
Q 008022 85 NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF--- 161 (581)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--- 161 (581)
...++.+.+.. +........++..+.+.|++++|.++++.+... .++++.++..+...+...|++++|.+.+++.
T Consensus 417 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 417 IADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 55555554443 222233444455555666666666666666554 2335566777777777777777777777766
Q ss_pred -CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHH
Q 008022 162 -GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240 (581)
Q Consensus 162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (581)
|.+...+..++..+...|++++|...++.+...+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..
T Consensus 495 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 572 (899)
T TIGR02917 495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA 572 (899)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH
Confidence 5556666677777777777777777777777653 2355666777777777788888888887776654 345566677
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 008022 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN 320 (581)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (581)
++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...++.+.+.. +.++..+..+...+...|+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 7778888888888888888877653 3466778888888888888888888888887653 4466777788888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022 321 LLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
+++|...++++.+..+ .+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|.+.|+.
T Consensus 651 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888877542 356677888888888888888888888887765 56777788888888899999999999998
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022 401 MKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 480 (581)
+...+ |+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.++|+++.... +++.
T Consensus 729 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 804 (899)
T TIGR02917 729 ALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA 804 (899)
T ss_pred HHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH
Confidence 87765 555677778888889999999999999988764 6678888888999999999999999999999875 5678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVR 559 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 559 (581)
.+++.++..+...|+ .+|+..++++.. ..| ++..+..++..+...|++++|.++++++++.+ +.+..++..++.
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 879 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALK---LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHH
Confidence 889999999999999 889999999988 345 56678889999999999999999999999864 337888889999
Q ss_pred HHHhccCCCChHHHHHHHhh
Q 008022 560 SLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 560 ~~~~~g~~~~a~~~~~~~~~ 579 (581)
++.+.|+.++|.++++++++
T Consensus 880 ~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 880 ALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.9e-38 Score=331.33 Aligned_cols=558 Identities=14% Similarity=0.072 Sum_probs=417.3
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI 84 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (581)
+...|++++|...++.+.+..+ .+...+..++..+...|++++|...++.+....+ .+...+..+...+.+.|++++|
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 4455666666666666665533 2455566666666667777777777666665443 4556666666677777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---
Q 008022 85 NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF--- 161 (581)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--- 161 (581)
..+|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+.. .......++..+.+.|++++|.++++++
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77777766554 345555666666666777777777777776655322 2334455666777777777777777776
Q ss_pred -CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHH
Q 008022 162 -GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240 (581)
Q Consensus 162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (581)
|.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+...+ +.+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 5566777788888888888888888888877653 2245556667777788888888888888887664 345667777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 008022 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN 320 (581)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (581)
+...+...|+.++|...++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 7888888888888888888877664 2355667777888888888888888888887653 5577788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022 321 LLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
+++|...++.+.+..+ .+...+..+..++...|++++|...++++.... |.+...+..++..+...|++++|..+++.
T Consensus 617 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888877642 356677778888888888888888888887764 56677888888888888899999988888
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022 401 MKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 480 (581)
+.+.. +++...+..+...+...|++++|.+.++.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+.
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 87765 4566677788888888999999999999888763 455677778888889999999999999988865 5578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRS 560 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 560 (581)
..+..++..|...|++++|.+.|+++.+.. ++++.++..+++.+...|+ .+|+.+++++.+. .+.+...+..+...
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHH
Confidence 888889999999999999999999998732 2367788899999999999 7899999999874 23345667788888
Q ss_pred HHhccCCCChHHHHHHHhhc
Q 008022 561 LFSNLGHLGPVYILDDIMAN 580 (581)
Q Consensus 561 ~~~~g~~~~a~~~~~~~~~~ 580 (581)
+...|++++|.+.++++++.
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999988763
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.7e-30 Score=268.48 Aligned_cols=557 Identities=13% Similarity=0.050 Sum_probs=334.0
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH----------------
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIY---------------- 68 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------- 68 (581)
...+++.+.|.+.++++....+. ++.++..+++.+.+.|+.++|.+.++++.+..+ .+....
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~~~~~~~~ 115 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLSTPEGRQA 115 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhcCCchhhH
Confidence 44566677777777776665443 666666677777777777777777777766543 222221
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc
Q 008022 69 NHILDALLAENRFSMINPIYSNMKRDGMEPNVFT-YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK 147 (581)
Q Consensus 69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (581)
....+.+...|++++|.+.|+.+.+.+ +|+... ...........|+.++|++.++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 222335566677777777777766543 333221 1111111223466667777777666652 2244455566666666
Q ss_pred cCCHHHHHHHHHHhCCCc---------------------c---hH----------------------------------H
Q 008022 148 LGQVEEARELAMRFGSGV---------------------S---VY----------------------------------N 169 (581)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~---------------------~---~~----------------------------------~ 169 (581)
.|+.++|++.++++.... . .+ .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 677666666666540000 0 00 0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-cccH----------
Q 008022 170 ALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN-IHSF---------- 238 (581)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~---------- 238 (581)
.....+...|++++|+..|++..+... .+...+..+..++.+.|++++|...|++..+...... ...+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 112334456666666666666665522 2455566666666666777777766666665421111 0111
Q ss_pred --HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHH----
Q 008022 239 --TSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALI---- 312 (581)
Q Consensus 239 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 312 (581)
......+.+.|++++|+..|+++.+... .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 1113345566666667666666666532 234455556666666667777766666666542 22333333332
Q ss_pred --------------------------------------HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 008022 313 --------------------------------------DGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN 354 (581)
Q Consensus 313 --------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 354 (581)
..+...|++++|+..+++..+..+. +...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3334455556666666555554322 3344455555566666
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh---------hHHHHHHHHHhcCC
Q 008022 355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT---------TYNELLDGLLRVNR 425 (581)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~ 425 (581)
++++|...++++.... |.++..+..+...+...++.++|...++.+......++.. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 6666666666655432 3334444444444455556666666555543221111111 11233455666777
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008022 426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR 505 (581)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 505 (581)
.++|.++++. .+.+...+..+...+.+.|++++|++.|++++... +.+...+..++.+|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777661 25566677788889999999999999999999875 55788899999999999999999999999
Q ss_pred HhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CC---CHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 506 IRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGI--CP---NFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 506 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+.+ ..| +...+..++.++...|++++|.+++++++...- +| +...+..+...+...|+.++|++.+++.+.
T Consensus 663 ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred Hhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 887 345 556677888899999999999999999986421 11 224566677888899999999999998874
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.5e-28 Score=253.90 Aligned_cols=531 Identities=12% Similarity=0.044 Sum_probs=364.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhH-------
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTY------- 103 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------- 103 (581)
..+...++.....++.+.|.+.++++....+ .++..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Confidence 4466677888899999999999999998765 578899999999999999999999999999875 3333332
Q ss_pred ---------HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc-hHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHH
Q 008022 104 ---------NILLKALCKNNRVDGAYKLLVEMGNKGCAPDAV-SYTTIVSSICKLGQVEEARELAMRF----GSGVSVYN 169 (581)
Q Consensus 104 ---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~ 169 (581)
......+...|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|++.++++ |.+...+.
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~ 185 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN 185 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 233446788999999999999998763 22322 1112222233469999999999998 77788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC------------------C--------------CCcccH--------------
Q 008022 170 ALINGLCKEHKIEEAFWLLCEMVDRGI------------------D--------------PNVITY-------------- 203 (581)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~-------------- 203 (581)
.+...+...|+.++|+..++++..... . |+....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999998754311 0 110000
Q ss_pred -------HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHhH--
Q 008022 204 -------STIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN-VVAY-- 273 (581)
Q Consensus 204 -------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-- 273 (581)
......+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+...... ...+
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 011334566788999999999888764 33677788888889999999999999998887643221 1111
Q ss_pred ----------HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 008022 274 ----------STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAY 343 (581)
Q Consensus 274 ----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 343 (581)
......+.+.|++++|...++++.... |.+...+..+...+...|++++|++.|+++.+..+. +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 122345678899999999999988764 456677778888899999999999999988876432 33344
Q ss_pred HHHHHHH------------------------------------------HccCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 008022 344 TCMVKVL------------------------------------------CQNNMFHQAHSLIEKMAFENCPPNTVTFNTF 381 (581)
Q Consensus 344 ~~l~~~~------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 381 (581)
..+...+ ...|++++|...+++..... |.++..+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4444333 23344444444444444432 3334444444
Q ss_pred HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH---------HHHHHH
Q 008022 382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV---------TYNTIL 452 (581)
Q Consensus 382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~ 452 (581)
...|...|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++.. .+....
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 444555555555555555444322 1122222222233334444555544444432211111110 112234
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCC
Q 008022 453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGG 531 (581)
Q Consensus 453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 531 (581)
..+...|++++|.++++. .+.+...+..++..+.+.|++++|++.++++.+ ..| +...+..++..|...|+
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC
Confidence 456667777777777651 245667788899999999999999999999998 456 67789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 532 MQEAFIYLQKMLNEGICP-NFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 532 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+++|++.++++.+. .| +...+..+..++...|++++|.++++++++
T Consensus 653 ~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 653 LAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999998864 44 455667788888999999999999999875
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=3.2e-25 Score=223.04 Aligned_cols=544 Identities=12% Similarity=0.024 Sum_probs=379.2
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 008022 6 GEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMIN 85 (581)
Q Consensus 6 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (581)
...|++++|+..|+.+++..+. +..++..+++.|...|++++|+..+++..+..+ .|...+..+ ..+ +++.+|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHH
Confidence 3459999999999999998776 699999999999999999999999999998654 444444443 222 8999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHH--------HHhcCChhHHHHHHHHHhhCCCCCCcchHHHH-HHHHHccCCHHHHHH
Q 008022 86 PIYSNMKRDGMEPNVFTYNILLKA--------LCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTI-VSSICKLGQVEEARE 156 (581)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~ 156 (581)
.+++++.... +.+..++..+... |.+. ++|.+.++ .......|++.+.... .+.|...|++++|++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999885 4556666666655 5444 55555555 3333333445545555 889999999999999
Q ss_pred HHHHh----CCCcchHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 008022 157 LAMRF----GSGVSVYNALINGLCK-EHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC 231 (581)
Q Consensus 157 ~~~~~----~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 231 (581)
.+.++ +.+......|..+|.. .++ +.+..+++. .++-++..+..+...+.+.|+.+.|..+++++.....
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 99988 4555556777777777 366 777777553 2334777888888999999999999988887643311
Q ss_pred C-CCcccHH------------------------------HHHHHHHccCCHHHHHHHH----------------------
Q 008022 232 N-PNIHSFT------------------------------SLLKGYLLGGRTHEASDLW---------------------- 258 (581)
Q Consensus 232 ~-~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~---------------------- 258 (581)
. |+..++. .++..+.+.++++.+.++.
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 1 1111111 1234445555555444442
Q ss_pred -------HHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-C-CCCcHHhHHHHHHHHHhcCC---HHHHHH
Q 008022 259 -------NRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN-S-CPPNVTTYSALIDGFAKAGN---LLGASQ 326 (581)
Q Consensus 259 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~ 326 (581)
..+.+.. +-+......+.....+.|+.++|.++++..... + ...+......++..|.+.+. ...+..
T Consensus 359 ~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 2222210 113333344444556778888888888887662 1 22344455567777766655 222322
Q ss_pred H----------------------HHHHHhC-CC-CC--ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHH
Q 008022 327 I----------------------WNRMISN-GC-SP--NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNT 380 (581)
Q Consensus 327 ~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 380 (581)
+ +...... +. ++ +...+..+..++.. +++++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 2 1111111 11 23 45566777777766 78888999888777653 44433334
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022 381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM 460 (581)
Q Consensus 381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (581)
+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...++...+.. +.+...+..+.......|+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence 455556889999999999987654 3444556667778888999999999999988764 3344444444445556699
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHH
Q 008022 461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYL 539 (581)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (581)
+++|...+++.+.. .|+...+..++.++.+.|++++|+..++++.. ..| +...+..++.++...|++++|+..+
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999886 45688889999999999999999999999998 557 6678888999999999999999999
Q ss_pred HHHHHcCCCC-CHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 540 QKMLNEGICP-NFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 540 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+++++. .| +...+..+..++...|++++|++.++++++
T Consensus 667 ~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 667 ERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999874 45 466788889999999999999999998875
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=6.9e-24 Score=213.45 Aligned_cols=551 Identities=11% Similarity=0.003 Sum_probs=389.8
Q ss_pred ChhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------
Q 008022 1 MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDA------ 74 (581)
Q Consensus 1 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------ 74 (581)
|.+.|...|++++|+..+++.++.++ -+...+..+ ..+ +++++|..+++++....+ .+..++..+...
T Consensus 84 LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~ 157 (987)
T PRK09782 84 LAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNA 157 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccch
Confidence 35678899999999999999998854 244444444 222 899999999999998665 445555555554
Q ss_pred --HHhcCCcchHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc-cCC
Q 008022 75 --LLAENRFSMINPIYSNMKRDGMEPNVFTYNIL-LKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK-LGQ 150 (581)
Q Consensus 75 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 150 (581)
|.+. +.|...++ .......|++.+.... ...|.+.|++++|++++.++.+.+.. +......|..+|.. .++
T Consensus 158 l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~ 232 (987)
T PRK09782 158 LRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD 232 (987)
T ss_pred hhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH
Confidence 5555 45555555 3333333445444444 88999999999999999999998543 45556677778887 466
Q ss_pred HHHHHHHHHHh-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCcccHHHH----------------------
Q 008022 151 VEEARELAMRF-GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGID-PNVITYSTI---------------------- 206 (581)
Q Consensus 151 ~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l---------------------- 206 (581)
+.+..+++.. ..++..+..++..+.+.|+.++|.++++++...... |...++.-+
T Consensus 233 -~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 233 -DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred -HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 8887776544 457788889999999999999999999887554221 222222211
Q ss_pred --------HHHHHccCChhHHHHHHH-----------------------------HHHHcCCCCCcccHHHHHHHHHccC
Q 008022 207 --------ISSLCDVGNVETSLGILG-----------------------------QMFVRGCNPNIHSFTSLLKGYLLGG 249 (581)
Q Consensus 207 --------~~~~~~~g~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (581)
+..+.+.++++.+.++.. .+.... +-+......+.....+.|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 334445555554444421 111110 113333334444556789
Q ss_pred CHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCC---hhhHHHH----------------------HHHHHhC-C-
Q 008022 250 RTHEASDLWNRMIRE--GFLPNVVAYSTLIHGLCSNGS---MDEAVSV----------------------SYQMEEN-S- 300 (581)
Q Consensus 250 ~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~- 300 (581)
+.++|.++++..... +-.++.....-++..|.+.+. ..++..+ +...... +
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 999999999988773 122334445577777777766 2233222 1111111 1
Q ss_pred CCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhH
Q 008022 301 CPP--NVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTF 378 (581)
Q Consensus 301 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (581)
.++ +...+..+..++.. ++..+|...+.+..... |+......+...+...|++++|...++++... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 134 67778888877776 78888999888877663 55554444556667899999999999998665 4555556
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022 379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA 458 (581)
Q Consensus 379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (581)
..+..++...|+++.|...++...+.. ++....+..+.......|++++|...+++..+. .|+...+..+...+.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 677788899999999999999998765 233333334444455669999999999999986 56788899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHH
Q 008022 459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFI 537 (581)
Q Consensus 459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 537 (581)
|++++|+..+++.+... +.+...++.++.++...|++++|++.++++.+ ..| ++..+..++.++...|++++|+.
T Consensus 623 G~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 623 HNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999975 55778899999999999999999999999998 557 67789999999999999999999
Q ss_pred HHHHHHHcCCCCCH-HhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022 538 YLQKMLNEGICPNF-ATWNVLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 538 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
.++++++ +.|+. .+.........+..+++.|.+-+++..
T Consensus 699 ~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 699 YARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999998 45664 455556666666666777776666543
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.3e-24 Score=199.37 Aligned_cols=557 Identities=12% Similarity=0.025 Sum_probs=297.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 008022 11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSN 90 (581)
Q Consensus 11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 90 (581)
++.|.+.|..+++..+ +|...+..-+......|+|..|+.+|..++..++...++....+..++.+.|+.+.|+..|++
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 4666666666666543 255555555555566677777777777765543332222333334555666777777777777
Q ss_pred HHhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh------
Q 008022 91 MKRDGMEPNVFTYNILLKALCKN---NRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF------ 161 (581)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------ 161 (581)
..+.+ |.++.++..|...-... ..+..+..++...-..+ .-++...+.|...|.-.|+++.+..+...+
T Consensus 225 alqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 225 ALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 66654 23333333333222222 23444555555444432 225666666666666667776666665555
Q ss_pred -CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHH
Q 008022 162 -GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240 (581)
Q Consensus 162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (581)
+.-...|.-+.++|-..|++++|...|-+..+....-....+..+...+.+.|+++.+...|+.+.+.. +.+..+...
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~i 381 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKI 381 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 122334556666666677777777666655554211112233445566666777777776666666652 333455555
Q ss_pred HHHHHHccC----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH----hCCCCCcHHhHHHHH
Q 008022 241 LLKGYLLGG----RTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQME----ENSCPPNVTTYSALI 312 (581)
Q Consensus 241 l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~ 312 (581)
+...|...+ ..+.|..++.+..+.. +.|...|-.+...+... +...++..+..+. ..+.++.+...+.+.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 555555443 3345555555554442 22455555555444333 3222244443322 333345566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---CCCCCh------hhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022 313 DGFAKAGNLLGASQIWNRMISN---GCSPNV------VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK 383 (581)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 383 (581)
..+...|++..|...|...... ...++. .+--.+...+-..++++.|.+.|..+.... |.-...|-.+..
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ 538 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhH
Confidence 6666667777776666665443 111222 122234445555566666666666666552 222333333333
Q ss_pred HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHh-----
Q 008022 384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC-GIQLNIVTYNTILHGVCR----- 457 (581)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~----- 457 (581)
.....++..+|...++.....+ ..++..+..+...+.+...+..|.+-|..+.+. ...+|..+.-.|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3334455666666666665533 234444555555566655555555555444332 112455555555554432
Q ss_pred -------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccC
Q 008022 458 -------AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSG 530 (581)
Q Consensus 458 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 530 (581)
.+..++|+++|.++++.. +.|..+-+.++-+++..|++.+|+.+|.++.+.. .....+|..++.+|..+|
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHH
Confidence 233455666666666554 4455566666666666666666666666666521 123445666666666666
Q ss_pred CHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022 531 GMQEAFIYLQKMLNEGI-CPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 531 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
++..|+++|+...+.-. ..+..+...|.+++++.|++.+|.+.+...+
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666666666644322 2345555666666666666666665554443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.8e-24 Score=199.16 Aligned_cols=531 Identities=14% Similarity=0.085 Sum_probs=409.9
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---c
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR---F 81 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~ 81 (581)
....|++..|+.+|..++..++..-+.....+...+.+.|+.+.|+..|+++.+.++ .++.++..+...-....+ +
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHH
Confidence 456799999999999988866655556666677888999999999999999999665 444444444443333443 5
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CCcchHHHHHHHHHccCCHHHHHHHHH
Q 008022 82 SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCA--PDAVSYTTIVSSICKLGQVEEARELAM 159 (581)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 159 (581)
..+..++...-..+ +.++...+.|...+...|++..+..+...+...... .-...|..+.++|...|++++|...+.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56777777766665 678889999999999999999999999988776311 123457789999999999999999999
Q ss_pred Hh----CCC-cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC----ChhHHHHHHHHHHHcC
Q 008022 160 RF----GSG-VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVG----NVETSLGILGQMFVRG 230 (581)
Q Consensus 160 ~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~ 230 (581)
+. +.+ .-.+..+.+.++..|+++.+...|+...... +-+..|...+...|...+ ..+.|..++.+..+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 88 333 4456678899999999999999999998873 336677788888888775 4567777777777653
Q ss_pred CCCCcccHHHHHHHHHccCCHHHHHHHHHHHH----hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC---CCC-
Q 008022 231 CNPNIHSFTSLLKGYLLGGRTHEASDLWNRMI----REGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN---SCP- 302 (581)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~- 302 (581)
+.|...|..+...+....-+ .++..|.... ..+..+.+...|.+...+...|.+.+|...|...... ...
T Consensus 411 -~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 55677888777777655444 4477776544 3455577888999999999999999999999988765 112
Q ss_pred -----CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChh
Q 008022 303 -----PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV-AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTV 376 (581)
Q Consensus 303 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 376 (581)
++..+-..+....-..++.+.|.+.|..+.+. .|+-. .|..+.......+...+|...+......+ ..++.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ 565 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN 565 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence 22233445666777788999999999999886 34433 34444433344578889999999988765 67788
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCcc
Q 008022 377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYE-CLPNITTYNELLDGLLR------------VNRVKEAFELVTEIEKCGIQL 443 (581)
Q Consensus 377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~ 443 (581)
.++.+...+.+...+..|.+-|..+.+.- ..+|..+...|.+.+.. .+..++|+++|.++++.. |-
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 88888889999999998988777764432 12566666666665543 245678999999998874 66
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHH
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLL 523 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 523 (581)
|...-+.+...++..|++.+|..+|.+..+.. .....+|..++++|..+|+|..|+++|+.+...+.-..+......|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 88888999999999999999999999999874 34667899999999999999999999999988777666889999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 008022 524 WGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
+++.+.|.+.+|.+.+..+...
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=7.1e-24 Score=189.60 Aligned_cols=447 Identities=17% Similarity=0.142 Sum_probs=340.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHH----HHhCCCcchHHHHHHHHHhc
Q 008022 103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELA----MRFGSGVSVYNALINGLCKE 178 (581)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~ 178 (581)
...+..-..+.|++.+|++.-...-+.+. .+......+-..+....+.+.....- +..+.-..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 34455556677888888876665544421 12222222333444444444433322 12256677888888999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHH-HHHHHHHccCCHHHHHHH
Q 008022 179 HKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFT-SLLKGYLLGGRTHEASDL 257 (581)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~ 257 (581)
|+++.|+.+++.+.+...+ ....|..+..++...|+.+.|...|.+.++. .|+..... .+.......|+..+|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998887332 5678888889999999999999999888876 45543333 234444557889999988
Q ss_pred HHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008022 258 WNRMIREGFLPN-VVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGC 336 (581)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 336 (581)
|.+..+. .|. ...|+.|...+...|+...|+..|++..+.. |.-...|-.+...|...+.++.|...|.+.....+
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 8888876 343 3458888888999999999999999888764 33466788899999999999999999988877532
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 008022 337 SPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL 416 (581)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 416 (581)
.....+..+...|..+|..+.|+..+++..... |.-+..|+.+..++-..|++.+|...|++..... +......+.|
T Consensus 284 -n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 284 -NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred -cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 245567777778889999999999999998764 5557889999999999999999999999988765 3345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCC
Q 008022 417 LDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD-AITFNIIIYAYCKQGK 495 (581)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 495 (581)
...+...|.+++|..+|....+.. +--...++.|...|-+.|++++|+..|++.++- .|+ ...++.++..|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence 999999999999999999988752 333567888899999999999999999999874 555 5678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhccCC
Q 008022 496 VNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF-ATWNVLVRSLFSNLGH 567 (581)
Q Consensus 496 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 567 (581)
.+.|++.+.+++. ++|. ...++.|+..|...|+..+|+.-|+++++ ++||. ..+-.++.++.--.+.
T Consensus 438 v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence 9999999999998 6784 56889999999999999999999999987 57774 4555666555333333
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=5.2e-23 Score=184.14 Aligned_cols=440 Identities=17% Similarity=0.139 Sum_probs=345.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc
Q 008022 68 YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK 147 (581)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (581)
...+..-..+.|++.+|++.-...-..+ +.+....-.+-..+.+..+.+....--....+.. +.-..+|+.+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556667778887777666555443 3333333344445555555555544433333331 2245677778888888
Q ss_pred cCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH-HHHHHHHHccCChhHHHHH
Q 008022 148 LGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITY-STIISSLCDVGNVETSLGI 222 (581)
Q Consensus 148 ~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~ 222 (581)
.|++.+|+..++.. |.....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+....-..|+.++|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 88888888877776 666788888889999999999999999888876 4443333 2344555668999999999
Q ss_pred HHHHHHcCCCCC-cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 008022 223 LGQMFVRGCNPN-IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN-VVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300 (581)
Q Consensus 223 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (581)
|.+.++. .|. ...|..|...+...|+...|+..|++..+.+ |+ ...|-.|...|...+.+++|+..+.+.....
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9888877 343 6778889999999999999999999998874 43 4568889999999999999999998887653
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN-VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN 379 (581)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (581)
|.....+..+...|...|.++.|+..|++.++. .|+ +..|+.+..++-..|+..+|.+.+.+..... +......+
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 446677888888899999999999999999886 344 5689999999999999999999999998874 56678899
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHhc
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN-IVTYNTILHGVCRA 458 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 458 (581)
.|...|...|.++.|..+|....+.. +.-....+.|...|-++|++++|+..+++.++ +.|+ ...|+.+...|-..
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 99999999999999999999988754 22345788999999999999999999999998 4665 56899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHH
Q 008022 459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGI 526 (581)
Q Consensus 459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 526 (581)
|+.+.|.+.+.+++..+ +.=...++.|+..|-.+|++.+|++-++++.+ ++|| +..+..++.++
T Consensus 436 g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk---lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK---LKPDFPDAYCNLLHCL 500 (966)
T ss_pred hhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc---cCCCCchhhhHHHHHH
Confidence 99999999999999864 33466889999999999999999999999998 7785 44666666554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.2e-20 Score=187.49 Aligned_cols=425 Identities=13% Similarity=-0.020 Sum_probs=283.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhc
Q 008022 103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKE 178 (581)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~ 178 (581)
+......+.+.|+++.|+..|++.+.. .|++..|..+..+|...|++++|++.+.+. |.+..++..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445666777888888888888888765 566777888888888888888888888877 66677888888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHH
Q 008022 179 HKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLW 258 (581)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (581)
|++++|+.-|......+.. +......++..+.. ..+........+.. +++...+..+.. +...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 9988888877766544211 11111112211111 12222233332321 222233332222 22111111111111
Q ss_pred HHHHhCCCCCCH-HhHHHHHHH---HHhcCChhhHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 259 NRMIREGFLPNV-VAYSTLIHG---LCSNGSMDEAVSVSYQMEENS--CPPNVTTYSALIDGFAKAGNLLGASQIWNRMI 332 (581)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (581)
....+. .+.. ..+..+... ....+++++|.+.|+...+.+ .+.....+..+...+...|++++|...+++..
T Consensus 281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111111 1111 111111111 123467888888888888754 23345667777888888899999999999888
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhh
Q 008022 333 SNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITT 412 (581)
Q Consensus 333 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 412 (581)
...+. +...|..+...+...|++++|...+++..... +.+..++..+...+...|++++|...|++..+.. +.+...
T Consensus 359 ~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 359 ELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred HcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 76322 35577778888888899999999999887764 5667888888888899999999999999888765 335666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH------HHHHH
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAI------TFNII 486 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l 486 (581)
+..+...+.+.|++++|+..++...+.. +.+...++.+...+...|++++|++.|++.+......+.. .++..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 7778888888999999999999888753 5567788888888899999999999999988763221111 11222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 487 IYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
...+...|++++|.++++++.. +.| +...+..++..+...|++++|+++|+++.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~---l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALI---IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2233446899999999999887 446 4557888899999999999999999998764
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=2.6e-20 Score=184.97 Aligned_cols=429 Identities=15% Similarity=0.026 Sum_probs=253.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 008022 33 FISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCK 112 (581)
Q Consensus 33 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (581)
+...+..+.+.|++++|+..|++++... |++..|..+..++.+.|++++|+..++...+.. +.+...+..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4455667777777777777777776643 455666777777777777777777777777664 4455667777777777
Q ss_pred cCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 008022 113 NNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMV 192 (581)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (581)
.|++++|...|......+.. +......++..+........+...++..+.+...+..+...+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~----------------- 268 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL----------------- 268 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----------------
Confidence 77777777766655443111 111111111111111111222222222222222222221111
Q ss_pred HCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-cccHHHHHHH---HHccCCHHHHHHHHHHHHhCC-CC
Q 008022 193 DRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN-IHSFTSLLKG---YLLGGRTHEASDLWNRMIREG-FL 267 (581)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~ 267 (581)
..........-+....+. .+. ...+..+... ....+++++|.+.|+...+.+ ..
T Consensus 269 -------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 269 -------------------QSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred -------------------HHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 111111111111111111 111 1111111111 122356667777777766653 12
Q ss_pred C-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 008022 268 P-NVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCM 346 (581)
Q Consensus 268 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 346 (581)
| ....+..+...+...|++++|+..+++..+.. |.....|..+...+...|++++|...++++.+..+ .+...+..+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l 405 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHR 405 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 2 33456666666777777777777777776653 33455666777777777777777777777766532 245667777
Q ss_pred HHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 008022 347 VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRV 426 (581)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 426 (581)
...+...|++++|...|++..... |.+...+..+..++.+.|++++|+..|+...+.. +.+...++.+...+...|++
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCH
Confidence 777777788888888887777664 4556667777777778888888888888776643 33456777777788888888
Q ss_pred HHHHHHHHHHHHcCCcccHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 008022 427 KEAFELVTEIEKCGIQLNIV------TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAI 500 (581)
Q Consensus 427 ~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 500 (581)
++|++.|+.........+.. .++.....+...|++++|.+++++.+... +.+...+..++.++.+.|++++|+
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 88888888877643211111 12222233444688899999988888764 335556788888899999999999
Q ss_pred HHHHHHhc
Q 008022 501 QLLDRIRG 508 (581)
Q Consensus 501 ~~~~~~~~ 508 (581)
+.|+++.+
T Consensus 563 ~~~e~A~~ 570 (615)
T TIGR00990 563 KLFERAAE 570 (615)
T ss_pred HHHHHHHH
Confidence 99988877
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.4e-21 Score=182.10 Aligned_cols=303 Identities=17% Similarity=0.146 Sum_probs=226.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhc
Q 008022 242 LKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPN---VTTYSALIDGFAKA 318 (581)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 318 (581)
...+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3345566777777777777776632 2445666777777777777777777777766432211 24566677777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHhhcCCChHHH
Q 008022 319 GNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN----TVTFNTFIKGLCGCGRVDWA 394 (581)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 394 (581)
|+++.|..+|+++.+.. +++..++..++..+.+.|++++|...++.+...+..+. ...+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888877653 23566777778888888888888888888776542221 12345667778888999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|.+.++++...
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999987754 33455777888899999999999999999987643333466788889999999999999999999886
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCH
Q 008022 475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN---SGGMQEAFIYLQKMLNEGICPNF 551 (581)
Q Consensus 475 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 551 (581)
.|+...+..++..+.+.|++++|..+++++.+ ..|+...+..++..+.. .|+.++++.+++++.+.++.|++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 45666678889999999999999999999888 46888888877777664 56899999999999988777776
Q ss_pred H
Q 008022 552 A 552 (581)
Q Consensus 552 ~ 552 (581)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=9e-20 Score=180.16 Aligned_cols=332 Identities=11% Similarity=0.047 Sum_probs=218.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc
Q 008022 168 YNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL 247 (581)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (581)
...++..+.+.|++++|..+++........ +...+..++.+....|+++.|...++++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 444556667777777777777777666333 34445555566666777777777777777663 3345566666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 008022 248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQI 327 (581)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (581)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...+..+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 777777777777777653 2245556667777777777777777777665543 2233333333 236667777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHH----HHHHHHHHhh
Q 008022 328 WNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDW----AMKLLDQMKQ 403 (581)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 403 (581)
++.+.+....++......+...+...|++++|...+++..... +.+...+..+...+...|++++ |...|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 7777665433334444445566777777777777777777654 5566667777777777777774 6777777766
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008022 404 YECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITF 483 (581)
Q Consensus 404 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 483 (581)
.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++...+ +.+...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 54 3345567777777777788888888877777653 4445566667777777788888888877777653 1222334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 484 NIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
..++.++...|++++|++.|+++.+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456677777888888888877766
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=5.9e-21 Score=180.46 Aligned_cols=295 Identities=14% Similarity=0.111 Sum_probs=246.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcc
Q 008022 277 IHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN---VVAYTCMVKVLCQN 353 (581)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 353 (581)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677899999999999999874 45677889999999999999999999999987632222 24577888999999
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCCHHHH
Q 008022 354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI----TTYNELLDGLLRVNRVKEA 429 (581)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 429 (581)
|++++|..+|+++.... +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998764 567788999999999999999999999999876533221 2345677788899999999
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022 430 FELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG 509 (581)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (581)
...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|.+.++++.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~- 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE- 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99999998864 4456678888899999999999999999999864333356788899999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh---ccCCCChHHHHHHHhh
Q 008022 510 GEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS---NLGHLGPVYILDDIMA 579 (581)
Q Consensus 510 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 579 (581)
..|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+..+++.+++++++
T Consensus 278 --~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 --EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred --hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 4577777788999999999999999999999874 6888888877776664 4688899999998875
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=3.3e-19 Score=180.19 Aligned_cols=423 Identities=10% Similarity=-0.010 Sum_probs=240.2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHH
Q 008022 97 EPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALI 172 (581)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~ 172 (581)
+.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.+.+++. |.+...+..++
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444444455556666777777777766665421 223334556666666666666666666654 44455555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHH
Q 008022 173 NGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTH 252 (581)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (581)
.++...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 55556666666666666555541 12333 4455555555566666666665555542 222333344444455555555
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH-----hcCCH---HHH
Q 008022 253 EASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFA-----KAGNL---LGA 324 (581)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~---~~a 324 (581)
.|+..++.+.. .|+... -+ ........+.... ..+++ +.|
T Consensus 168 ~Al~~l~~~~~---~p~~~~---~l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~A 215 (765)
T PRK10049 168 PALGAIDDANL---TPAEKR---DL--------------------------EADAAAELVRLSFMPTRSEKERYAIADRA 215 (765)
T ss_pred HHHHHHHhCCC---CHHHHH---HH--------------------------HHHHHHHHHHhhcccccChhHHHHHHHHH
Confidence 55555544332 121000 00 0000011111111 11122 556
Q ss_pred HHHHHHHHhC-CCCCChh-hHH----HHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 008022 325 SQIWNRMISN-GCSPNVV-AYT----CMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLL 398 (581)
Q Consensus 325 ~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 398 (581)
+..++.+.+. ...|+.. .+. ..+..+...+++++|+..|+.+...+.+........+..+|...|++++|+..|
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6666666543 1122211 111 112234556777777777777776542111112222456777778888888887
Q ss_pred HHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------ccc---HHHHHHHHHHHHhcCCH
Q 008022 399 DQMKQYECLP---NITTYNELLDGLLRVNRVKEAFELVTEIEKCGI-----------QLN---IVTYNTILHGVCRAGMV 461 (581)
Q Consensus 399 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~ 461 (581)
+.+....... .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 7776543111 123344555667777888888888877765421 122 22445566777888899
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHH
Q 008022 462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQ 540 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (581)
++|++.++++.... +.+...+..++..+...|++++|++.++++.. +.| +...+...+..+...|++++|..+++
T Consensus 376 ~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 376 PQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV---LEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999998888764 55677888888888888999999999998888 557 45566777778888889999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHH
Q 008022 541 KMLNEGICPNFATWNVLVRSL 561 (581)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~~~ 561 (581)
++++. .|+......+-+..
T Consensus 452 ~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 452 DVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHh--CCCCHHHHHHHHHH
Confidence 88874 56655554444444
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.7e-19 Score=178.24 Aligned_cols=335 Identities=10% Similarity=0.011 Sum_probs=273.8
Q ss_pred cccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 008022 200 VITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHG 279 (581)
Q Consensus 200 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (581)
......++..+.+.|+++.|..+++...... +-+...+..++.+....|++++|...++++....+. +...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 3345566778889999999999999998874 334556666777788899999999999999987432 56678888899
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 008022 280 LCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA 359 (581)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 359 (581)
+...|++++|...+.++.... |.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998863 557788889999999999999999999988776433 23333333 347889999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHH
Q 008022 360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKE----AFELVTE 435 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 435 (581)
...++.+......++......+..++...|++++|...++...... +.+...+..+...+...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998776433444445556778889999999999999998765 4466778889999999999986 8999999
Q ss_pred HHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022 436 IEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD 515 (581)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 515 (581)
+.+.. +.+...+..+...+...|++++|...+++++... +.+...+..++.++.+.|++++|++.++++.. ..|+
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~ 350 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGV 350 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcc
Confidence 98864 5567888999999999999999999999999875 44677788899999999999999999999998 3565
Q ss_pred H-HhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 516 I-ISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 516 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
. ..+..++.++...|++++|...|+++.+.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 33445677889999999999999999874
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=3.7e-18 Score=160.38 Aligned_cols=354 Identities=12% Similarity=0.116 Sum_probs=269.5
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
.+..+|++++|+.++.++++.++. +...|..|...|-++|+.+++...+-.+...++ .|...|..+.....+.|++..
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 345569999999999999998765 899999999999999999999998887777665 566999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHH----HHHHHHHccCCHHHHHHHHH
Q 008022 84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYT----TIVSSICKLGQVEEARELAM 159 (581)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~ 159 (581)
|.-+|.++.+.. +++....-.-...|-+.|+...|...|.++.+...+.|..-.. ..+..+...++.+.|.+.+.
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999986 5666666666788889999999999999999874322322222 34566777888899999988
Q ss_pred Hh------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC---------------------------CCCCcccHHHH
Q 008022 160 RF------GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG---------------------------IDPNVITYSTI 206 (581)
Q Consensus 160 ~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l 206 (581)
.. ..+...++.++..+.+...++.+......+.... ..++.... -+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87 3456678999999999999999999888877621 12222221 12
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCC--CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 008022 207 ISSLCDVGNVETSLGILGQMFVRGC--NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG 284 (581)
Q Consensus 207 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 284 (581)
.-++.+....+....+...+.+.+. ..+...|..+..++...|++..|+.++..+......-+...|..+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 2233445555555666666666653 33467788889999999999999999999998755556778999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHccCCh
Q 008022 285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN--------GCSPNVVAYTCMVKVLCQNNMF 356 (581)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~ 356 (581)
..+.|...+....... |.+...-..+...+.+.|+.++|.+.+..+..- +..|+..........+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999988763 456666777888889999999999999886532 2233333344444556666666
Q ss_pred hHHHHH
Q 008022 357 HQAHSL 362 (581)
Q Consensus 357 ~~a~~~ 362 (581)
++-...
T Consensus 543 E~fi~t 548 (895)
T KOG2076|consen 543 EEFINT 548 (895)
T ss_pred HHHHHH
Confidence 554433
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=2.5e-18 Score=170.10 Aligned_cols=432 Identities=11% Similarity=0.054 Sum_probs=256.2
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCc-chHHHHHHHHHccCCHHHHHHHHHHh--CCCcchHHHH--HHHHHhcCChhHHHH
Q 008022 112 KNNRVDGAYKLLVEMGNKGCAPDA-VSYTTIVSSICKLGQVEEARELAMRF--GSGVSVYNAL--INGLCKEHKIEEAFW 186 (581)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l--~~~~~~~~~~~~a~~ 186 (581)
+.|+++.|+..|++..+. .|+. .....++..+...|+.++|+..+++. +.+...+..+ ...+...|++++|++
T Consensus 46 r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred hCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555555443 1221 11114444444445555555555554 1122222222 334555566666666
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 008022 187 LLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGF 266 (581)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (581)
+|+++.+.... ++..+..++..+...++.++|+..++++... .|+...+..++..+...++..+|++.++++.+..+
T Consensus 124 ly~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 66666555222 3344444555555566666666666665544 33333333333333334444446666666665531
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhH------HHHHHHH-----HhcCC---HHHHHHHHHHHH
Q 008022 267 LPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTY------SALIDGF-----AKAGN---LLGASQIWNRMI 332 (581)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~---~~~a~~~~~~~~ 332 (581)
.+...+..+..++.+.|-...|.++..+-... +.+....+ ...++.- ....+ .+.|..-++.+.
T Consensus 201 -~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 201 -TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 13444555555555666555555444332211 11111000 0000000 00111 234444455544
Q ss_pred hC-CCCCChh-----hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC
Q 008022 333 SN-GCSPNVV-----AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC 406 (581)
Q Consensus 333 ~~-~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 406 (581)
.. +..|... ...-.+-++...+++.++++.++.+...+.+....+-..+.++|...+++++|..+|+.+.....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 1223221 22234567788899999999999999887666677888899999999999999999998865431
Q ss_pred -----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------cccH---HHHHHHHHHHHhcCCHHHHHHH
Q 008022 407 -----LPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI-----------QLNI---VTYNTILHGVCRAGMVVEAFQL 467 (581)
Q Consensus 407 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~ 467 (581)
+++......|..++...+++++|..+++.+.+... .|++ ..+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22333456788899999999999999999887311 1221 2344556677889999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 008022 468 LGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG 546 (581)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (581)
++++.... +-|......++..+...|.+.+|.+.++.+.. +.| +..+....+.++...|++++|..+.+.+.+.
T Consensus 439 le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~- 513 (822)
T PRK14574 439 LEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISR- 513 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-
Confidence 99998775 66888899999999999999999999987776 457 5667778888889999999999999888874
Q ss_pred CCCCHHhHHH
Q 008022 547 ICPNFATWNV 556 (581)
Q Consensus 547 ~~~~~~~~~~ 556 (581)
.|+......
T Consensus 514 -~Pe~~~~~~ 522 (822)
T PRK14574 514 -SPEDIPSQE 522 (822)
T ss_pred -CCCchhHHH
Confidence 565444333
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1e-18 Score=176.72 Aligned_cols=414 Identities=11% Similarity=0.015 Sum_probs=211.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022 27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106 (581)
Q Consensus 27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (581)
+.++......+....-.|+.++|++++....... +.+...+..+...+...|++++|..+|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3466666666777777777777777777776522 2445556777777777777777777777776654 4455566666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChh
Q 008022 107 LKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIE 182 (581)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~ 182 (581)
+..+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++ |.+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 777777777777777777777652 22344 666667777777777777777766 555666666666777777777
Q ss_pred HHHHHHHHHHHCCCCCCcc------cHHHHHHHHH-----ccCCh---hHHHHHHHHHHHc-CCCCCcc-cHH----HHH
Q 008022 183 EAFWLLCEMVDRGIDPNVI------TYSTIISSLC-----DVGNV---ETSLGILGQMFVR-GCNPNIH-SFT----SLL 242 (581)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~ 242 (581)
.|+..++.... .|+.. ....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 77776665443 12200 0001111111 11112 3444444444432 1111111 000 001
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhc
Q 008022 243 KGYLLGGRTHEASDLWNRMIREGFL-PNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPP---NVTTYSALIDGFAKA 318 (581)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 318 (581)
..+...|+.++|+..|+.+.+.+.. |+. ....+...|...|++++|...++.+....... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 2223445555555555555544321 111 11112344555555555555555544322100 012233333444555
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHhhcCCChHHHH
Q 008022 319 GNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN---TVTFNTFIKGLCGCGRVDWAM 395 (581)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 395 (581)
|++++|..+++.+....+. ....+. ... ..|+ ...+..+...+...|++++|+
T Consensus 324 g~~~eA~~~l~~~~~~~P~-~~~~~~----------------------~~~-~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPP-FLRLYG----------------------SPT-SIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred ccHHHHHHHHHHHhhcCCc-eEeecC----------------------CCC-CCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555554443110 000000 000 0111 122334445555556666666
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 396 KLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
+.++++.... +.+...+..+...+...|++++|++.+++..... |.+...+...+..+...|++++|..+++++++.
T Consensus 380 ~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 380 MRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6666655443 3334455555555556666666666666655542 223444444444555566666666666666654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=3.5e-18 Score=169.03 Aligned_cols=439 Identities=11% Similarity=0.015 Sum_probs=299.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (581)
.+.....-+...++.|+++.|+..|+++.+..+...+.++ .++..+...|+.++|+..+++..... +........+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ 110 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAAR 110 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence 4455555566667888888888888888876543223344 77777778888888888888887211 222223333355
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---CCCcchHHHHHHHHHhcCChhHHH
Q 008022 109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF---GSGVSVYNALINGLCKEHKIEEAF 185 (581)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 185 (581)
.+...|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++ .++...+..++..+...++..+|+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHH
Confidence 777778888888888888877333 4566677778888888888888888887 223333333333333455565588
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccH------HHHHHHH---H--ccCC---H
Q 008022 186 WLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSF------TSLLKGY---L--LGGR---T 251 (581)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~---~ 251 (581)
+.++++.+.. +-+...+..+..++.+.|-...|.++..+-...- .+....+ ...++.- . ...+ .
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 8888888873 2255666777788888888888887776543221 1111000 1111110 0 1122 3
Q ss_pred HHHHHHHHHHHhC-CCCCCHH-----hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 008022 252 HEASDLWNRMIRE-GFLPNVV-----AYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS 325 (581)
Q Consensus 252 ~~a~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 325 (581)
+.|+.-++.+... +..|... ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4566666666553 2123221 222345577788999999999999998876656678888899999999999999
Q ss_pred HHHHHHHhCCC-----CCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCC-----------CCCh---hhHHHHHHHhh
Q 008022 326 QIWNRMISNGC-----SPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC-----------PPNT---VTFNTFIKGLC 386 (581)
Q Consensus 326 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~ 386 (581)
.++..+..... +++......|..++...+++++|..+++++..... .|++ ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99998866531 22344457788899999999999999999877321 1222 23445677788
Q ss_pred cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHH
Q 008022 387 GCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQ 466 (581)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 466 (581)
-.|+..+|++.++.+.... +-|......+...+...|.+.+|.+.++...... +-+..+....+.++...+++++|..
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHH
Confidence 8899999999999997765 5677888888999999999999999997776652 4456677777888888899999999
Q ss_pred HHHHHHHC
Q 008022 467 LLGKMLIE 474 (581)
Q Consensus 467 ~~~~~~~~ 474 (581)
+.+.+...
T Consensus 506 ~~~~l~~~ 513 (822)
T PRK14574 506 LTDDVISR 513 (822)
T ss_pred HHHHHHhh
Confidence 99888876
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=2.9e-15 Score=135.99 Aligned_cols=544 Identities=13% Similarity=0.077 Sum_probs=338.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 008022 8 KCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPI 87 (581)
Q Consensus 8 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 87 (581)
.+|..+|..++..+.+.++. ++..|..-++.--..|.+..|..+..+=-+. .+.+.++|...++ ....+.|..+
T Consensus 264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cCChHHHHHH
Confidence 35778899999999988766 7778877777777788888888776544332 2244455544332 1222333333
Q ss_pred HHHHHhCCCCCChhhHHH---------------------------HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHH
Q 008022 88 YSNMKRDGMEPNVFTYNI---------------------------LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTT 140 (581)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~---------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 140 (581)
.....+.. +.++..|.. |-.+.....+.+.|.-++.+..+. ++.+. -
T Consensus 338 vA~Avr~~-P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~----d 411 (913)
T KOG0495|consen 338 VANAVRFL-PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSM----D 411 (913)
T ss_pred HHHHHHhC-CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchH----H
Confidence 33333221 112222211 112222344445566666666554 22222 2
Q ss_pred HHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCcccHHHHHHHHHc
Q 008022 141 IVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCE----MVDRGIDPNVITYSTIISSLCD 212 (581)
Q Consensus 141 l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~ 212 (581)
|..++.+...++.|..++.+. |.+..+|.+....--.+|+.+...+++.+ +...|+..+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 334455556666677666665 66677777666666677777766666544 3344666666666666666777
Q ss_pred cCChhHHHHHHHHHHHcCCCCC--cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 008022 213 VGNVETSLGILGQMFVRGCNPN--IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAV 290 (581)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 290 (581)
.|..-.+..+....+..|+... ..+|..-...|.+.+.++-|..+|...++.- +.+...|......--..|..++..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHH
Confidence 7777777777777766664432 4566666677777777777777777766652 224445655555555566777777
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 008022 291 SVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN 370 (581)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (581)
.++++.... +|.....|......+-..|+...|..++..+.+..+. +...|-.-+........++.|..+|.+....
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 777777664 3445555666666666677777777777777666433 5556666667777777777777777776654
Q ss_pred CCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHH
Q 008022 371 CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYN 449 (581)
Q Consensus 371 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (581)
.++...|..-+....-.++.++|.+++++..+. .|+.. .|..+.+.+.+.++.+.|.+.|..-.+. ++.....|.
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 455566655555555567777777777776653 24433 5666666777777777777777666554 344455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHcc
Q 008022 450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNS 529 (581)
Q Consensus 450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 529 (581)
.+...=.+.|.+-+|..++++..-.+ +.+...|...++.-.+.|..+.|..++.++.+.. +.+...|..-|+..-+.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCc
Confidence 66666666777777777777777665 4466677777777777777777777777776632 22455666666665555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 530 GGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 530 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
++-..+...+++. .-|+...-.+...++...+.+.|.+++.+.++
T Consensus 801 ~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 801 QRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred ccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5544444444443 34556666777778887888888888888765
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=6e-16 Score=140.31 Aligned_cols=507 Identities=12% Similarity=0.053 Sum_probs=393.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 008022 14 VQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKR 93 (581)
Q Consensus 14 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 93 (581)
-.++++..++. +|.++..|..... ..+.+.|+.++.++.+.-+ .+.+.|.++ ++...|+.|..+++...+
T Consensus 365 K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp-~s~dLwlAl----arLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCP-QSMDLWLAL----ARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhcc-chHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 34566777766 3446666655443 5567779999998887543 566666654 445567888899988876
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH----hhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-------C
Q 008022 94 DGMEPNVFTYNILLKALCKNNRVDGAYKLLVEM----GNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-------G 162 (581)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~ 162 (581)
. ++.+..+|......--.+|+.+...+++++- ...|+..+...|..=...+-..|.+-.+..+.... .
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 5 4778888888888878889998888887754 45688888888888888888888888888877766 4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 008022 163 SGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLL 242 (581)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (581)
.-..+|+.-.+.|.+.+.++-|..+|....+. ++-+...|......--..|..+....+|++.... ++.....|....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHH
Confidence 45678888899999999999999999888876 4446677777777777788899999999998876 233455566667
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHH
Q 008022 243 KGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLL 322 (581)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (581)
..+...|++..|..++....+.... +...|-.-+..-..+..++.|..+|.+.... .|+...|..-+..-...++.+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 7788889999999999998887533 6677888888888999999999999888774 567777777777777788999
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH
Q 008022 323 GASQIWNRMISNGCSPN-VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM 401 (581)
Q Consensus 323 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 401 (581)
+|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+. .|..+..|-.+...-.+.|++-.|..+++..
T Consensus 669 eA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 669 EALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 999999988876 344 346777788899999999999998887665 4667788888888888889999999999998
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 008022 402 KQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAI 481 (581)
Q Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 481 (581)
.-.+ +.+...|...++.-.+.|+.+.|..+..+.++. ++.+...|..-|....+.++-......+++. .-|+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCch
Confidence 7766 457778999999999999999999999888876 4666777777776666666644444433332 45777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022 482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF 551 (581)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 551 (581)
.+..++..+....++++|.+.|.++.. ..|| ..+|..+...+..+|.-++-.+++.+.... .|..
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk---~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~h 884 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVK---KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTH 884 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCC
Confidence 888888888888999999999999998 5564 557888888889999888888889888764 4553
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=6.6e-17 Score=139.01 Aligned_cols=462 Identities=16% Similarity=0.163 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChhHH-HHHHHHHhhCCCCCCcchHHHHH
Q 008022 66 KIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALC--KNNRVDGA-YKLLVEMGNKGCAPDAVSYTTIV 142 (581)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~ 142 (581)
.+-+.+++ ....|....+.-+|+.|.+.|++.++..-..+....+ .+.++.-| ++-|-.|.+.|-. +..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 34444444 4567889999999999999988888777666665543 33333322 3344445544432 33344
Q ss_pred HHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHH
Q 008022 143 SSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGI 222 (581)
Q Consensus 143 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 222 (581)
+.|.+.+ -+++..|....++..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-.- ..++
T Consensus 191 ----K~G~vAd--L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~L 260 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKL 260 (625)
T ss_pred ----ccccHHH--HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHH
Confidence 3454444 45666699999999999999999999999999999998888889999999997654332 2788
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh-HHHHHHHHH
Q 008022 223 LGQMFVRGCNPNIHSFTSLLKGYLLGGRTHE----ASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDE-AVSVSYQME 297 (581)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 297 (581)
+.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+++-++..+ +..++.++.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999999999999999999999998875 56778889999999999999999999998887644 555555554
Q ss_pred hC----C----CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCh---hhHHHHHHHHHccCChhHHHHH
Q 008022 298 EN----S----CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNG----CSPNV---VAYTCMVKVLCQNNMFHQAHSL 362 (581)
Q Consensus 298 ~~----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 362 (581)
.. . .+.+...|...+..|.+..+.+.|.++..-+.... +.|+. .-|..+....++....+.....
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1 23456678888999999999999988877665431 22332 2356677788899999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 008022 363 IEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ 442 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 442 (581)
|+.|...-+-|+..+...++++....+.++-..+++.++...|...+......++. .+......
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~----------------~L~~~k~h 484 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM----------------LLARDKLH 484 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH----------------HHhcCCCC
Confidence 99999887778999999999999999999999999999988764433333222222 22222222
Q ss_pred ccHH---HHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-
Q 008022 443 LNIV---TYNTILHGVCRAGMVVEA-FQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII- 517 (581)
Q Consensus 443 ~~~~---~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~- 517 (581)
|+.. -+.....-|+ -++.++ ...-.++.+. .......+.++..+.+.|..++|.+++..+...++--|-..
T Consensus 485 p~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 485 PLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 2211 2222222111 122222 2222333333 33455566677777778888888888877754444334333
Q ss_pred --hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022 518 --SYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS 563 (581)
Q Consensus 518 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (581)
+...++..-.+.+....|...++-|...+.+.-...-..+...|.-
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~i 608 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAI 608 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCc
Confidence 3335555666777777888887777654333222233344433333
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=9.3e-17 Score=138.12 Aligned_cols=464 Identities=16% Similarity=0.172 Sum_probs=262.0
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022 4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINS--YRRVGLAEQAL-KMFYRIREFGLKPTVKIYNHILDALLAENR 80 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (581)
.+..+|.+.++--+|+.|.+.|++.++.+-..+++. |....++.-|. +.|-.|...|- .+..+|. .|.
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sWK--------~G~ 194 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSWK--------SGA 194 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccccc--------ccc
Confidence 356788889999999999999988888887777664 44444444332 33333333321 1111221 111
Q ss_pred cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHH-HHHHHH
Q 008022 81 FSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEE-ARELAM 159 (581)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 159 (581)
. |. ++-+.. +.+..++..+|.++++.-..+.|.+++++......+.+..+|+.+|.+-.-...-+- +.-+-.
T Consensus 195 v--Ad-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 195 V--AD-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQ 267 (625)
T ss_pred H--HH-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHh
Confidence 1 11 222222 334445555555555555555555555555554444455555555543322211111 111122
Q ss_pred HhCCCcchHHHHHHHHHhcCChh----HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhH-HHHHHHHHHH----cC
Q 008022 160 RFGSGVSVYNALINGLCKEHKIE----EAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVET-SLGILGQMFV----RG 230 (581)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~ 230 (581)
++.||..++|+++++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++..+.. .-
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 22555555555555555555443 467889999999999999999999999998887644 4445444432 22
Q ss_pred CCC----CcccHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 008022 231 CNP----NIHSFTSLLKGYLLGGRTHEASDLWNRMIREG----FLPNV---VAYSTLIHGLCSNGSMDEAVSVSYQMEEN 299 (581)
Q Consensus 231 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (581)
++| |..-+...+..|....+.+-|.++-.-+.... +.|+. .-|..+....+.....+.....|..|...
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333 34456677888888888888887765544321 22332 34667778888888999999999999988
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022 300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN 379 (581)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (581)
-.-|+..+...++++....+.++-.-++|.+++..|...+......++..+++.. ..|+...-.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~hp~tp~r~ 491 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LHPLTPERE 491 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CCCCChHHH
Confidence 7888999999999999999999999999999988765444433333333333322 112111111
Q ss_pred HHHHHhhcC-CCh-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----cccHHHHHHHHH
Q 008022 380 TFIKGLCGC-GRV-DWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI----QLNIVTYNTILH 453 (581)
Q Consensus 380 ~l~~~~~~~-~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~ 453 (581)
.+-.+..+. -++ +.....-.++.+.. ......+.++..+.+.|..++|.+++..+.+.+- .|.......+++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 111111110 011 11122222333333 3344555666666777777777777777654321 122223334555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 008022 454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ 501 (581)
Q Consensus 454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 501 (581)
.-.+.+++..|..+++-+...+.+.-...-+.+...|.-.....+++.
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 556667777777777777655433222233444444433333333333
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1.6e-15 Score=142.93 Aligned_cols=367 Identities=10% Similarity=0.051 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL 110 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (581)
......++.....|+.++|.+++.++++..+ .+...|..+...|-+.|+.+++...+-.+.... +.|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3344445556777999999999999998665 677899999999999999999999887777765 66778999999999
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CC-Ccch----HHHHHHHHHhcCCh
Q 008022 111 CKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GS-GVSV----YNALINGLCKEHKI 181 (581)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~-~~~~----~~~l~~~~~~~~~~ 181 (581)
.+.|++++|.-.|.+.++.. +++....-.-+..|-+.|+...|...+.++ |+ +..- --..++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999983 334444555678899999999999999988 31 1121 22346677788888
Q ss_pred hHHHHHHHHHHHC-CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCC---------------------------C
Q 008022 182 EEAFWLLCEMVDR-GIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCN---------------------------P 233 (581)
Q Consensus 182 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~ 233 (581)
+.|.+.++..... +-..+...++.++..+.+...++.+............. +
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999887763 22345667888999999999999998888777652111 1
Q ss_pred CcccHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHH
Q 008022 234 NIHSFTSLLKGYLLGGRTHEASDLWNRMIREG--FLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSAL 311 (581)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (581)
+... ..++-++......+....+..-+.... +.-+...|..+..+|...|++.+|+.++..+.....-.+...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 112222333344444444444455554 3334566888999999999999999999999987666678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC--------CCCCChhhHHHHHH
Q 008022 312 IDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE--------NCPPNTVTFNTFIK 383 (581)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~ 383 (581)
.++|...|.++.|.+.|+..+...+. +......|...+.+.|+.++|.+.++.+... ..+|+.........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 99999999999999999999887432 4556677888899999999999999986522 23344445555666
Q ss_pred HhhcCCChHHHHHHHHHHh
Q 008022 384 GLCGCGRVDWAMKLLDQMK 402 (581)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~ 402 (581)
.+...|+.++-..+...|.
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 7778888777655555443
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=5e-15 Score=129.28 Aligned_cols=382 Identities=14% Similarity=0.126 Sum_probs=164.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHH
Q 008022 8 KCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVK-IYNHILDALLAENRFSMINP 86 (581)
Q Consensus 8 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 86 (581)
+++++.|..+|++.+..+.. +...|...+..-.++.....|+.+++++...- |.+. .|...+..--..|+...|.+
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHH
Confidence 44455555555555554422 45555555555555555555555555555422 2221 33333333344455555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-----
Q 008022 87 IYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----- 161 (581)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----- 161 (581)
+|+...+. .|+...|++.|..-.+.+..+.|..+++..+-. .|++.+|......--+.|....+..++...
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55555544 455555555555555555555555555555443 345555555555555555555555555444
Q ss_pred --CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHccCChhHHHHH--------HHHHHHc
Q 008022 162 --GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPN--VITYSTIISSLCDVGNVETSLGI--------LGQMFVR 229 (581)
Q Consensus 162 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~ 229 (581)
..+...+++....-.++..++.|..+|.-.... ++.+ ...|..+...--+.|+....... ++...+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 111223333333334444455555555444443 1111 11222222222223332222211 1222222
Q ss_pred CCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-H-hHHHHHHH--------HHhcCChhhHHHHHHHHHhC
Q 008022 230 GCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV-V-AYSTLIHG--------LCSNGSMDEAVSVSYQMEEN 299 (581)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~ 299 (581)
+ +-|-.+|-..++.-...|+.+...++|++....- +|-. . .|...+.. -....+.+.+.++++...+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2 2334444444444444455555555555544431 2211 0 11111110 11234444444444444442
Q ss_pred CCCCcHHhHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCh
Q 008022 300 SCPPNVTTYSALIDGF----AKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNT 375 (581)
Q Consensus 300 ~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 375 (581)
+|....||..+--.| .++.++..|.+++...+ |..|-..++...|..-.+.++++.+..++++.+.-+ |.+.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 233333333322222 23344444444444433 223444444444444444444455555554444443 3344
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHhh
Q 008022 376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQ 403 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 403 (581)
.+|......-...|+.+.|..+|....+
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 4444444444444445555444444443
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.5e-15 Score=131.17 Aligned_cols=435 Identities=11% Similarity=0.058 Sum_probs=200.4
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCc-chHHHH
Q 008022 63 PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDA-VSYTTI 141 (581)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 141 (581)
.+...|....+--...+++..|..+|+.++... ..+...|...+..-.+++.+..|..++++.+.. -|.+ ..|...
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 344444444444445566666666666666544 344555556666666666666666666666554 2222 123333
Q ss_pred HHHHHccCCHHHHHHHHHHh---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhH
Q 008022 142 VSSICKLGQVEEARELAMRF---GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVET 218 (581)
Q Consensus 142 ~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (581)
+.+--..|++..|.++|++. .|+..+|++.+..-.+.+.++.|..+++...-. .|+..+|......-.+.|....
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 34444556666666666655 566666666666666666666666666665543 4566666555555556666666
Q ss_pred HHHHHHHHHHcCCC--CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHH---
Q 008022 219 SLGILGQMFVRGCN--PNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN-VVAYSTLIHGLCSNGSMDEAVSV--- 292 (581)
Q Consensus 219 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~--- 292 (581)
+..+|+...+.-.. .+...+.+....-..+..++.|.-+|.-.+..-+... ...|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 66666655543100 0112222222222334445555555555444311111 12233333222233333222221
Q ss_pred -----HHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHH--------HHccCChh
Q 008022 293 -----SYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV--AYTCMVKV--------LCQNNMFH 357 (581)
Q Consensus 293 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~ 357 (581)
++.+.+.+ |.|-.+|-..++.-...|+.+...++|++.+.. ++|-.. .|...+.. -....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11222221 334445555555555555555555555555543 222110 11111111 11234445
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHh----hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008022 358 QAHSLIEKMAFENCPPNTVTFNTFIKGL----CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELV 433 (581)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 433 (581)
.+.++++..++. +|....+|..+--+| .++.+...|.+++-.... ..|..-++...+..-.+.++++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555554442 333344443332222 233444555555444332 2344444444444444555555555555
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 434 TEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG-TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+..++.+ |.+..+|......=...|+.+.|..+|.-++... .......|...+..-...|.+++|..+++++.+
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 5555443 3344444444444444455555555555444431 011112233333333444555555555555544
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2.7e-16 Score=136.48 Aligned_cols=485 Identities=12% Similarity=0.060 Sum_probs=286.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc----hHHHHH
Q 008022 68 YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYN-ILLKALCKNNRVDGAYKLLVEMGNKGCAPDAV----SYTTIV 142 (581)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 142 (581)
...+.+-|..+....+|+..|+-+.+..+-|+..... .+...+.+...+.+|++.++-....-...+.. ..+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3344455555556667777777777766556654332 34556667777777777777665541111111 223333
Q ss_pred HHHHccCCHHHHHHHHHHh---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH--------HHHHHHHH
Q 008022 143 SSICKLGQVEEARELAMRF---GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITY--------STIISSLC 211 (581)
Q Consensus 143 ~~~~~~g~~~~a~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~ 211 (581)
-.+.+.|+++.|+..|+.. .|+..+-..|+-++..-|+.++..+.|.+|......||..-| ..|+.-..
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 3456667777777777665 444444444555555667777777777777655322332211 11221111
Q ss_pred ccCCh--------hHHHHHH---HHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 008022 212 DVGNV--------ETSLGIL---GQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGL 280 (581)
Q Consensus 212 ~~g~~--------~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (581)
+...+ ..|.+.+ -+++.--+.|+- . .| .+-.++.+..-....+..+.. -.-...+
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f----------a-~g-~dwcle~lk~s~~~~la~dle--i~ka~~~ 429 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF----------A-AG-CDWCLESLKASQHAELAIDLE--INKAGEL 429 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch----------h-cc-cHHHHHHHHHhhhhhhhhhhh--hhHHHHH
Confidence 11100 0111111 001100011110 0 00 000111111110000000000 1112346
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH-h-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 008022 281 CSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFA-K-AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQ 358 (581)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 358 (581)
.+.|+++.|++++.-+.+..-+.....-+.+...+. + ..++..|.+.-+....... -+......-...-...|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHH
Confidence 788999999998888776643322222333332222 2 3346666666665544321 133333323333455789999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 359 AHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEK 438 (581)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 438 (581)
|...+++............| .+.-.+...|+.++|++.|-++... +..+...+..+...|....++..|++++-+...
T Consensus 509 a~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 99999998765322222222 2333466778999999988776432 124667777888888889999999999988876
Q ss_pred cCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHh
Q 008022 439 CGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIIS 518 (581)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 518 (581)
. ++.|+..+..|...|-+.|+-.+|.+++-.--+. ++.+..+...|..-|....-+++|+.+|+++.- +.|+..-
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~k 661 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSK 661 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHH
Confidence 5 6778899999999999999999999887665554 466888889999999999999999999999876 7799999
Q ss_pred HHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022 519 YTSLLWGI-CNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDD 576 (581)
Q Consensus 519 ~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (581)
|..++..| .+.|++.+|+.+|+..... ++.|...+..+++.+...| ..++.++-++
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg-l~d~key~~k 718 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG-LKDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc-chhHHHHHHH
Confidence 98777665 4679999999999998764 6677788877777666644 4455555444
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=7.1e-17 Score=139.96 Aligned_cols=479 Identities=14% Similarity=0.089 Sum_probs=320.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCcchHHHHHHHHHhCCCCCCh----hh
Q 008022 28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNH-ILDALLAENRFSMINPIYSNMKRDGMEPNV----FT 102 (581)
Q Consensus 28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 102 (581)
.+..++..+.+.|..+..+.+|+..++-+.+....|+...... +...+.+.+++..|++.|+..+..-...+- .+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 4556777788889999999999999999988766677665433 446788889999999999988765211111 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---C--CC--------cchHH
Q 008022 103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF---G--SG--------VSVYN 169 (581)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~--~~--------~~~~~ 169 (581)
.+.+...+.+.|.++.|+..|+...+. .|+-.+-..|+-++...|+.++..+.|.++ | ++ ...-.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 455555678999999999999998876 567767667788888899999999999988 1 11 11111
Q ss_pred HHHHHHHhcC---------C--hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccH
Q 008022 170 ALINGLCKEH---------K--IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSF 238 (581)
Q Consensus 170 ~l~~~~~~~~---------~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 238 (581)
.|+.--.++. . .++++-.--++...-+.|+ |. -..+.+++.++.-....+..+ .-
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~---fa---------~g~dwcle~lk~s~~~~la~d--le 422 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD---FA---------AGCDWCLESLKASQHAELAID--LE 422 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc---hh---------cccHHHHHHHHHhhhhhhhhh--hh
Confidence 2222211111 1 1112211111111111111 10 011233333322211100101 11
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 008022 239 TSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCS--NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFA 316 (581)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (581)
..-.-.+.++|+++.|++++.-+.+.+.+.....-+.|-..+.- ..++..|...-....... ..++.....-.....
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence 11233477899999999999888776433333333333333322 345777777666655432 334444333344445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 008022 317 KAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMK 396 (581)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 396 (581)
..|+++.|.+.|++............|+ +.-.+...|+.++|++.|-++... +..+...+..+...|....++..|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 6799999999999988753221122222 223466789999999999887654 24577888888999999999999999
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022 397 LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT 476 (581)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 476 (581)
++.+..+. ++.|+..+..|...|-+.|+-..|.+.+-+--+. ++.+..+...|...|....-+++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99887654 3567788899999999999999999887765554 577888888888888888899999999999876 5
Q ss_pred CcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCC
Q 008022 477 KLDAITFNIIIYA-YCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGG 531 (581)
Q Consensus 477 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 531 (581)
.|+..-|..++.. +.+.|++++|.++++....++ +.|..++.-|++.+...|.
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf--pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF--PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--ccchHHHHHHHHHhccccc
Confidence 8899999887754 556899999999999998744 3478888888888887774
No 37
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2e-13 Score=115.04 Aligned_cols=490 Identities=11% Similarity=0.056 Sum_probs=311.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022 37 INSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRV 116 (581)
Q Consensus 37 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (581)
+.-+....++..|+.+++.-...+-.....+-..+..++...|++++|...|..+.... .++...+..+.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 33445577888888888877654433333344556677788899999998888887765 56666666777666777888
Q ss_pred hHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008022 117 DGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGI 196 (581)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (581)
.+|..+-....+ ++.....++....+.|+-++...+.+.+.....--.+|.......-.+.+|++++......
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 888877665433 4445556667777888888888777777666666677777777778889999999988876
Q ss_pred CCCcccHHHHH-HHHHccCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 008022 197 DPNVITYSTII-SSLCDVGNVETSLGILGQMFVRGCNPN-IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYS 274 (581)
Q Consensus 197 ~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (581)
.|.-...+.-+ -+|.+..-++-+.+++.-..+. .|| ..+.+..+....+.=.-..|.+-...+...+-. . |
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~- 253 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y- 253 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-
Confidence 34444445433 4556777788888888877766 344 444444433333322223344444444443211 1 1
Q ss_pred HHHHHHHhc-----CChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 008022 275 TLIHGLCSN-----GSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKV 349 (581)
Q Consensus 275 ~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (581)
..+.-+++. ..-+.|++++-.+.+. -+..-..++-.|.+.++..+|..+.+++... .|-......++.+
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~a 327 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFA 327 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHH
Confidence 122223333 3456777777666654 2233445666788999999999888776432 2222222222222
Q ss_pred H-----HccCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 008022 350 L-----CQNNMFHQAHSLIEKMAFENCPPN-TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV 423 (581)
Q Consensus 350 ~-----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (581)
- .......-|...|+-.-.++...| ...-..+..++.-..++++++-.++.+...-...|...+ .+..+++..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHh
Confidence 1 112234556666666555543333 334456666777778899999999999886655555555 467889999
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHH
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTY-NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA-ITFNIIIYAYCKQGKVNNAIQ 501 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 501 (581)
|++.+|.++|-.+....++ |..+| ..+.++|.+.+.++.|+.++-++-. +.+. ..+..+++-|.+.+.+--|.+
T Consensus 407 gny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred cChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888765444 44455 5567788899999999887755532 2233 334556688999999999999
Q ss_pred HHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhc
Q 008022 502 LLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSN 564 (581)
Q Consensus 502 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 564 (581)
.|+.+.. +.|+++.| .|+......+|..+....-.|- ......++..+..+
T Consensus 483 AFd~lE~---lDP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~ 534 (557)
T KOG3785|consen 483 AFDELEI---LDPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMK 534 (557)
T ss_pred hhhHHHc---cCCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhC
Confidence 9999888 67888776 3444455556666655433332 23444555444443
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=7e-15 Score=138.02 Aligned_cols=294 Identities=12% Similarity=0.044 Sum_probs=158.2
Q ss_pred hcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 008022 282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHS 361 (581)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 361 (581)
..|+++.|.+.+.+..+.. +.....+-....+....|+++.+.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3566666666665555432 111222333345555666666666666666544222222223334555666666666666
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHH-HHHH---HHHhcCCHHHHHHHHHHHH
Q 008022 362 LIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYN-ELLD---GLLRVNRVKEAFELVTEIE 437 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~~~ 437 (581)
.++.+.+.. |.++..+..+...+...|+++.|.+.+..+.+.++. +...+. .-.. .....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666654 455566666666666667777676666666665432 222221 1111 1122222222333444443
Q ss_pred HcC---CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 008022 438 KCG---IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAIT-FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN 513 (581)
Q Consensus 438 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 513 (581)
+.. .+.++..+..+...+...|+.++|.+.+++.++......... ...........++.+.+.+.+++..+..+-+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 321 113566666666777777777777777777776532111111 0111112233466677777777766633222
Q ss_pred CCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022 514 PDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 514 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
|+.....++++.+.+.|++++|.++|++.......|+...+.++...+.+.|+.++|.+++++.+
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22145567777777777777777777743332245776666677777777777777777777654
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.4e-14 Score=124.74 Aligned_cols=223 Identities=16% Similarity=0.106 Sum_probs=181.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHH
Q 008022 315 FAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWA 394 (581)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 394 (581)
+.-.|+.-.+..-|+..++....++. .|..+...|...++.++-...|.+....+ |.++.+|..-.+.+.-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44578889999999999887544332 37777888999999999999999998876 77888898888888889999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
..-|++..+.. +.+...|..+..+..+.++++++...|++.+++ +|.-+..|+.....+...+++++|.+.|+..+..
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998876 345667777777778899999999999999987 5777889999999999999999999999999876
Q ss_pred CCC-----cCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 475 GTK-----LDAITFNIIIYA-YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 475 ~~~-----~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
... .+...+..-+.. +.-.+++..|.+++.++.+ +.| ....+.+|+..-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 311 122222211111 1124899999999999999 678 566899999999999999999999999865
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=1.8e-14 Score=134.38 Aligned_cols=283 Identities=10% Similarity=0.002 Sum_probs=151.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHH--HHHHHHHhcCCHHHH
Q 008022 248 GGRTHEASDLWNRMIREGFLPNVVAYS-TLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYS--ALIDGFAKAGNLLGA 324 (581)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 324 (581)
.|+++.|.+.+....+.. +++..+. ....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 566776666665544431 1222222 2233335666666666666666653 23332221 224455666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChh-------hHHHHHHHhhcCCChHHHHHH
Q 008022 325 SQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTV-------TFNTFIKGLCGCGRVDWAMKL 397 (581)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 397 (581)
...++.+.+..+. ++.....+...|.+.|+|++|..++..+.+....++.. .+..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666665422 45555666666666666666666666666554321111 112222222233344444555
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008022 398 LDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK 477 (581)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 477 (581)
++.+...- +.+......+...+...|+.++|.+++++..+. ++++.... +.+....++.+++.+..++..+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-C
Confidence 55443321 234455555666666666666666666666553 33442221 222233466666666666666553 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 478 LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 478 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.|+..+..++..|.+.|++++|.+.|+++.+ ..|+...+..+...+.+.|+.++|..++++.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455556666666666666666666666665 456666666666666666666666666665543
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=5e-17 Score=145.03 Aligned_cols=262 Identities=15% Similarity=0.084 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC
Q 008022 310 ALIDGFAKAGNLLGASQIWNRMISNG-CSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC 388 (581)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (581)
.+...+.+.|++++|.++++...... .+.|...|..+.......++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34555666677777777775443332 12234444445555566677777777777776654 3355556666665 566
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHhcCCHHHHHHH
Q 008022 389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCG-IQLNIVTYNTILHGVCRAGMVVEAFQL 467 (581)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 467 (581)
+++++|.+++....+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776654432 455556666677777777777777777765432 244666677777777778888888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 008022 468 LGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGI 547 (581)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 547 (581)
++++++.. +.|......++..+...|+.+++.++++...... ++|+..+..++.+|...|+.++|+.+|++..+. .
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 88887764 3356677777777777888887777777766622 235556677777788888888888888887764 2
Q ss_pred CCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 548 CPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 548 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+.|+.....+..++...|+.++|.++.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 34566677777788888888888877777654
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.2e-13 Score=118.86 Aligned_cols=481 Identities=14% Similarity=0.059 Sum_probs=251.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (581)
+.+-+..+.+-+..+.++.-|.-+-+++...+ .++...-.+++.+.-.|+++.|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34445555555566666666666666665544 44444455566666667777666665544322 445556666666
Q ss_pred HHHhcCChhHHHHHHHHH----hhC---------CCCCCcch----HHH-------HHHHHHccCCHHHHHHHHHHh-CC
Q 008022 109 ALCKNNRVDGAYKLLVEM----GNK---------GCAPDAVS----YTT-------IVSSICKLGQVEEARELAMRF-GS 163 (581)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~----~~~---------~~~~~~~~----~~~-------l~~~~~~~g~~~~a~~~~~~~-~~ 163 (581)
++.+..++++|..++... ... -+.+|..- .+. -...|....+.++|...+.+. ..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 666777777776666621 100 00111110 000 012233344455666655554 33
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHH
Q 008022 164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGI----DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFT 239 (581)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (581)
+...+.++...-.. ..-.+.+.++.+..... ..+......+.....-...-+.....-.+..-.+...+.....
T Consensus 171 D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 171 DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 33333222211100 01111111222211100 0011111111111100000000000000000011233344444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 008022 240 SLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG 319 (581)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (581)
.-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-.++.+. .|..+.+|-.+.-.|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 45556666777777777777777653 334445555556777777777666666666664 3556677777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHH
Q 008022 320 NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLD 399 (581)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 399 (581)
..++|++.|.+....+.. =...|-.+...|.-.+..++|...+....+.- +-....+--+.--|.+.++.+.|.++|.
T Consensus 327 k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 777777777776554221 13356666777777777777777776665431 2222222233344666677777777777
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 400 QMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----G--IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI 473 (581)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 473 (581)
+..... +.|+..++-+.-.....+.+.+|..+|+..... + ..--..+++.|..+|.+.+.+++|+..+++.+.
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 766543 334555555555555666777777777765521 0 001233466677777777777777777777776
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022 474 EGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW 524 (581)
Q Consensus 474 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (581)
.. +.+..++..++..|...|+++.|++.|.+..- +.|+..+-..++.
T Consensus 484 l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 484 LS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDNIFISELLK 530 (611)
T ss_pred cC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCccHHHHHHHH
Confidence 53 45666777777777777777777777777766 5665544444433
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=3.7e-11 Score=109.64 Aligned_cols=519 Identities=12% Similarity=0.101 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022 32 VFISVINSYRRVGLAEQALKMFYRIRE-FGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL 110 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (581)
+|...+..+..+|+...-+..|++.+. ..+.....+|...++.....+-++.+..+|++-++. ++..-+-.|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 333344444555555555555555543 222233334555555555555555555555555532 222244445555
Q ss_pred HhcCChhHHHHHHHHHhhCC------CCCCcchHHHHHHHHHccCCH---HHHHHHHHHh-----CCCcchHHHHHHHHH
Q 008022 111 CKNNRVDGAYKLLVEMGNKG------CAPDAVSYTTIVSSICKLGQV---EEARELAMRF-----GSGVSVYNALINGLC 176 (581)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~-----~~~~~~~~~l~~~~~ 176 (581)
...++.++|-+.+....... .+.+-..|..+.+...+.-+. -....+++.. ..-...|.+|...|+
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 55555555555555544321 111222333333333322111 1111122221 111234677777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC----------------------hhHHHHHHHHHHHcCC---
Q 008022 177 KEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGN----------------------VETSLGILGQMFVRGC--- 231 (581)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~~~--- 231 (581)
+.|.++.|..+|++..+. .....-|..+.+.|+.... ++.....|+.+.....
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 777777777777776654 2234445555555442211 1122222333222210
Q ss_pred --------CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----C-HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 008022 232 --------NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLP-----N-VVAYSTLIHGLCSNGSMDEAVSVSYQME 297 (581)
Q Consensus 232 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (581)
+.+...|.. +.-...|+..+....|.+..+. +.| . ...|..+...|-..|+++.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 001111111 1112345555666666666554 111 1 1236666777777788888887777776
Q ss_pred hCCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------C------ChhhHHHHHHHHHccCChh
Q 008022 298 ENSCPPN---VTTYSALIDGFAKAGNLLGASQIWNRMISNGCS-----------P------NVVAYTCMVKVLCQNNMFH 357 (581)
Q Consensus 298 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~ 357 (581)
+-+.+.- ..+|..-...-.++.+++.|.++.++.....-. + +...|..++...-..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 6543322 334555555555667777777777665432111 0 1223444444444556677
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHh---cCCHHHHHHHH
Q 008022 358 QAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLR---VNRVKEAFELV 433 (581)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~~~~~~a~~~~ 433 (581)
....+++++....+ .++...-.....+....-++++.++|++-...-..|+.. .|+..+.-+.+ ...++.|..+|
T Consensus 495 stk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 77777777766543 233332223333444555677777777665554445543 56655555443 23678888888
Q ss_pred HHHHHcCCcccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022 434 TEIEKCGIQLNIVT--YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGG 509 (581)
Q Consensus 434 ~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (581)
++.++ |.+|...- |......=.+-|-...|+++++++... +++. ...|+.++.--...=-+..-..+++++++
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe- 650 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE- 650 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH-
Confidence 88887 45554322 222222222457777788888886654 2322 23455555444433344455667777776
Q ss_pred CCCCCCHHhHHH---HHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhccC
Q 008022 510 GEWNPDIISYTS---LLWGICNSGGMQEAFIYLQKMLNEGICP--NFATWNVLVRSLFSNLG 566 (581)
Q Consensus 510 ~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 566 (581)
.-|+..+-.. ....-.+.|..+.|..+|....+. .+| +...|...=.--.+-|+
T Consensus 651 --~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 651 --SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred --hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 3455443322 233345677888888877766543 223 33444444444455555
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-12 Score=111.93 Aligned_cols=369 Identities=13% Similarity=0.057 Sum_probs=233.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHH--HHHHHHHccCCH
Q 008022 174 GLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFT--SLLKGYLLGGRT 251 (581)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 251 (581)
.+.+.|....|+..|...... -+..|...+....-.-+.+.+..+ . .+.+.+...+. .+..++-.....
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHHHHHHHHHH
Confidence 344566666777776666554 233344333332222222222211 1 11122211111 123344445566
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhcCCHHH-HHHHH
Q 008022 252 HEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSC--PPNVTTYSALIDGFAKAGNLLG-ASQIW 328 (581)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 328 (581)
+++..-.......|.+.+...-+....+.....|+++|+.+|+++.+... -.|..+|+.++-.-.......- |..++
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~ 323 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS 323 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 67777777777777665555555555666677788888888888887631 1356677776643322222111 11111
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCC
Q 008022 329 NRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLP 408 (581)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 408 (581)
.+- .-.+.|...+.+-|.-.++.++|...|+...+.+ |.....|+.+..-|....+...|++-++...+.+ +.
T Consensus 324 -~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~ 396 (559)
T KOG1155|consen 324 -NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR 396 (559)
T ss_pred -Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence 111 1234566667777777888888888888888776 5566777778888888888888888888888766 45
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
|...|-.+.++|.-.+.+.=|+-.|++..+.. |.|...|..|..+|.+.++.++|++.|.+....| ..+...+..+++
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHH
Confidence 77788888888888888888888888888763 6678888888888888888888888888888776 446678888888
Q ss_pred HHHhcCCHHHHHHHHHHHhcCC----CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022 489 AYCKQGKVNNAIQLLDRIRGGG----EWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF 562 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (581)
.|-+.++.++|...+++..+.. -+.| ...+..-|..-+.+.+++++|..+......- .+...--..+++-+.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir 551 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 8888888888888888766511 1222 1222233455566778888887777666652 444444445554443
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=7.4e-14 Score=130.32 Aligned_cols=281 Identities=12% Similarity=0.065 Sum_probs=143.9
Q ss_pred cCChhhHHHHHHHHHhCCCCCcHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCChhHH
Q 008022 283 NGSMDEAVSVSYQMEENSCPPNVTT-YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYT--CMVKVLCQNNMFHQA 359 (581)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 359 (581)
.|+++.|.+.+....+.. +++.. +.....+..+.|+++.+...+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555443321 11222 222233335566666666666666553 23322211 224455556666666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHH
Q 008022 360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI-------TTYNELLDGLLRVNRVKEAFEL 432 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 432 (581)
...++++.+.. |.++.....+...|...|+++.|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666665554 445555666666666666666666666666554433211 1222223323333344444555
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022 433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW 512 (581)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 512 (581)
++.+.+. .+.++.....+...+...|+.++|.+.+++..+. +++.... ++.+....++++++++.+++..+ .
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk---~ 323 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK---Q 323 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh---h
Confidence 5544332 2345555555666666666666666666666553 3333222 12222234666666666666555 2
Q ss_pred CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022 513 NP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 513 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
.| |+..+..+++.+.+.|++++|.+.|+++.+ ..|+...+..+...+.+.|+.++|.+.+++.+
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 24 344455666666666666666666666665 34665555556666666666666666665543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-12 Score=113.56 Aligned_cols=364 Identities=10% Similarity=0.017 Sum_probs=259.7
Q ss_pred CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhH-
Q 008022 195 GIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAY- 273 (581)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 273 (581)
+...|...+....-.+.+.|....|...|......- +-.-.+|..|.... -+.+. ...+.. +...+..-.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHH
Confidence 344465555555566778888999999988877541 22333333333322 22222 222222 122121111
Q ss_pred -HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHH
Q 008022 274 -STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCS--PNVVAYTCMVKVL 350 (581)
Q Consensus 274 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 350 (581)
--+..++......+++..-.......|++.+...-+....+.....+++.|+.+|+++.+..+- .|..+|+.++.+-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234566666788888888888888888877777777777778889999999999999987321 1556777665443
Q ss_pred HccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 008022 351 CQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAF 430 (581)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 430 (581)
... ..+..+.+-...--+-.+.|...+.+.|+-.++.++|...|++..+.+ +.....|+.+..-|...++...|+
T Consensus 310 ~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 221 112222222111114567788888999999999999999999999887 345668899999999999999999
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022 431 ELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (581)
+-++..++-. |.|-..|-.+.++|.-.+.+.=|+-+|+++.... +.|+..|..|+.+|.+.++.++|++.|.++...+
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999874 6788999999999999999999999999999875 5588999999999999999999999999999833
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCC-HHhHHHHHHHHHhccCCCChHHHHHH
Q 008022 511 EWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNE----GI-CPN-FATWNVLVRSLFSNLGHLGPVYILDD 576 (581)
Q Consensus 511 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (581)
..+...+..|+..|-+.++.++|..+|++.++. |. .|. ......|..-+.+.+++++|-.+...
T Consensus 463 --dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 463 --DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred --ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 235578899999999999999999999988663 22 231 22223344556667777777665443
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=7.1e-17 Score=144.06 Aligned_cols=261 Identities=16% Similarity=0.165 Sum_probs=102.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 008022 275 TLIHGLCSNGSMDEAVSVSYQMEENS-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQN 353 (581)
Q Consensus 275 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (581)
.+...+.+.|++++|++++....... .+.++..|..+.......++.+.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777788888888875544333 2445555666666667778888888888888766433 45556666666 677
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022 354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE-CLPNITTYNELLDGLLRVNRVKEAFEL 432 (581)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 432 (581)
+++++|..+++...+. .+++..+...+..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887776554 3556667777788888888888888888875432 234666777778888888888888888
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022 433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW 512 (581)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 512 (581)
+++..+.. |.|......++..+...|+.+++.++++...+.. +.|+..+..++.+|...|++++|+.++++... .
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~---~ 243 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK---L 243 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH---H
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc---c
Confidence 88888763 4457777788888888888888888888877664 45666778888888888888888888888877 4
Q ss_pred CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 513 NP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 513 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.| |+.....++.++...|+.++|.++.+++..
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 45 677778888888888888888888877654
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=4.8e-14 Score=132.43 Aligned_cols=292 Identities=12% Similarity=0.055 Sum_probs=135.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 008022 7 EKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINP 86 (581)
Q Consensus 7 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 86 (581)
..|+++.|.+.+....+..+. ....+.....+..+.|+++.|.+.+.++.+..+.+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 446666666666555544221 2223334455555566666666666665543322222233333555555666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHccCCHHHHHHHHHHhCCCc
Q 008022 87 IYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTT-IVSSICKLGQVEEARELAMRFGSGV 165 (581)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (581)
.++.+.+.. |.++.+...+...+.+.|++++|.+++..+.+.+.. +...+.. -...+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~-------------------- 232 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE-------------------- 232 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--------------------
Confidence 666666554 344455555666666666666666666666655432 2111110 00110
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc---HH
Q 008022 166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGI---DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHS---FT 239 (581)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~ 239 (581)
......+..++..+.+..+.+... +.++..+..+...+...|+.+.|..++++..+. .|+... ..
T Consensus 233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 001111111112222222222211 114444444555555555555555555555544 222221 01
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022 240 SLLKGYLLGGRTHEASDLWNRMIREGFLPNV--VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK 317 (581)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (581)
.........++.+.+.+.++...+..+ -|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 111112223455555555555554421 122 33445555566666666666666633322234555555566666666
Q ss_pred cCCHHHHHHHHHHH
Q 008022 318 AGNLLGASQIWNRM 331 (581)
Q Consensus 318 ~~~~~~a~~~~~~~ 331 (581)
.|+.++|.++|++.
T Consensus 383 ~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 383 AGDKAEAAAMRQDS 396 (409)
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666666554
No 49
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.1e-12 Score=109.01 Aligned_cols=456 Identities=12% Similarity=0.067 Sum_probs=304.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCH
Q 008022 72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQV 151 (581)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (581)
+.-+....++..|+.+++.-...+-.-...+-..+..++.+.|++++|...+..+.+. -.++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 5556678899999999988775542222334445666777999999999999998875 456777888888888889999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 008022 152 EEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC 231 (581)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 231 (581)
.+|..+..+.+.++-.-..+...-.+.++-++-..+-+.+... ...-.++.......-.+++|.+++..+...
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 9999999998888887777888888888888887777666543 122233444444555689999999999876
Q ss_pred CCCcccHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHH
Q 008022 232 NPNIHSFTSLL-KGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSA 310 (581)
Q Consensus 232 ~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (581)
.|+....+..+ -+|.+..-++-+.+++.-.++.- +.++...+..+....+.-.-..|..-...+.+.+... | .
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~ 254 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-P 254 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-h
Confidence 55655666544 45566677777888887766652 2244556655555555433334444444544433111 1 1
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-
Q 008022 311 LIDGFAKA-----GNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKG- 384 (581)
Q Consensus 311 l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 384 (581)
.+.-.++. .+-+.|.+++-.+.+. .| ...-.++-.|.+.++..+|..+.+++... .|-..+...+..+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHH
Confidence 22222222 3457788887776654 23 23344566688999999999999887522 2333333333322
Q ss_pred ----hhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022 385 ----LCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG 459 (581)
Q Consensus 385 ----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (581)
........-|...|+..-+.+..-|.. --..+...+.-..++++.+-.+..+..--...|...+ .+..+++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 222234566777777665555443332 3445566666677899999999888876434444444 4678899999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-hHHHHHHHHHccCCHHHHHHH
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII-SYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 538 (581)
++.+|+++|-++....++.+..-...++++|.+.+.++-|.+++-++-. +.+.. ....+...|.+.+.+=-|.+.
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998876554443444456678999999999999988876654 12333 344556678899999889999
Q ss_pred HHHHHHcCCCCCHHhH
Q 008022 539 LQKMLNEGICPNFATW 554 (581)
Q Consensus 539 ~~~~~~~~~~~~~~~~ 554 (581)
|+.+... .|++..|
T Consensus 484 Fd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 484 FDELEIL--DPTPENW 497 (557)
T ss_pred hhHHHcc--CCCcccc
Confidence 9988764 5666544
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.8e-12 Score=116.33 Aligned_cols=480 Identities=14% Similarity=0.053 Sum_probs=310.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022 64 TVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS 143 (581)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (581)
+..-+..+++-+..+.++..|.-+-++....+ .|+..-..+.+++.-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 44556666666677777888888877777664 44444556777888888888887777654322 226667777778
Q ss_pred HHHccCCHHHHHHHHHHh----------CCCc-------chH-----HHH-------HHHHHhcCChhHHHHHHHHHHHC
Q 008022 144 SICKLGQVEEARELAMRF----------GSGV-------SVY-----NAL-------INGLCKEHKIEEAFWLLCEMVDR 194 (581)
Q Consensus 144 ~~~~~g~~~~a~~~~~~~----------~~~~-------~~~-----~~l-------~~~~~~~~~~~~a~~~~~~~~~~ 194 (581)
++.+..+++.|..++... +.+. ..+ +.- ...|....+.++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 888888888888887733 1110 000 000 01222233344444444444333
Q ss_pred CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCC----CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008022 195 GIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC----NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV 270 (581)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (581)
|...+..+...-. ... -.+.+.++.+..... ..+......+.........-+.....-....-.+...+.
T Consensus 171 ----D~~c~Ea~~~lvs-~~m-lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVS-AHM-LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred ----chhhHHHHHHHHH-HHh-cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 2222222111100 000 000000111110000 000111111111000000000000000000001222344
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022 271 VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVL 350 (581)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (581)
.....-..-+...+++.+..++...+.+.. |+....+..-|.++...|+..+-..+=.++.+.- +..+.+|-.+.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 455555666778899999999999988864 6677777777778889998888777777787763 33677899998888
Q ss_pred HccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 008022 351 CQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAF 430 (581)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 430 (581)
...|+..+|.+.|.+....+ +.-...|-.....|.-.+..++|...+....+.- +.....+-.+.--|.+.++.+.|.
T Consensus 323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 88899999999999987664 4446678888899999999999999998876532 222223344555688899999999
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022 431 ELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GT--KLDAITFNIIIYAYCKQGKVNNAIQLLD 504 (581)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (581)
++|.+.... .|.|+...+.+.-.....+.+.+|..+|+..+.. +. ..-..+++.|+.+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999999876 3668888888888888889999999999998832 10 1144578999999999999999999999
Q ss_pred HHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022 505 RIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS 563 (581)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (581)
+... ..| +..++.+++..|...|+++.|.+.|.+.+. +.|+..+...++..+..
T Consensus 480 ~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9998 456 888999999999999999999999999986 68888766666665444
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.3e-13 Score=113.19 Aligned_cols=290 Identities=17% Similarity=0.149 Sum_probs=164.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhcCCHHHH
Q 008022 248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPN---VTTYSALIDGFAKAGNLLGA 324 (581)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 324 (581)
.++.++|.++|-+|.+.+. .+..+.-+|.+.|.+.|..+.|+++.+.+.++.--+. ......+..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4667777777777776532 1334455566667777777777777777666421111 12233455556667777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022 325 SQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN----TVTFNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
+.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+++.|...+++
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 777777666421 2344556666777777777777777776665542222 12345555555566667777777766
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022 401 MKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 480 (581)
..+.+ +..+..-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|.+.|++++....+.++.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 66554 223333334555666667777777777777666544445566666667777777777777776666653 233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc---cCCHHHHHHHHHHHHHc
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN---SGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 545 (581)
..-..+...-....-.+.|...+.+-.. -+|+...+..++..-.. .|...+.+..++.|+..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3333444433333344444444433333 25666666666554432 23455555566666543
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=8.4e-13 Score=124.49 Aligned_cols=518 Identities=14% Similarity=0.088 Sum_probs=302.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 008022 16 YLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDG 95 (581)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (581)
.+|..+...|+.|+..+|.+++..|+..|+.+.|- +|.-|...+.+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677788899999999999999999999999998 9999988788788889999999988888887776
Q ss_pred CCCChhhHHHHHHHHHhcCChhH---HHHHHHHHhh----CCCCCCcc--------------hHHHHHHHHHccCCHHHH
Q 008022 96 MEPNVFTYNILLKALCKNNRVDG---AYKLLVEMGN----KGCAPDAV--------------SYTTIVSSICKLGQVEEA 154 (581)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~--------------~~~~l~~~~~~~g~~~~a 154 (581)
.|.+.+|..+..+|.+.||... ..+.++.+.. .|+..... .-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999755 3332222221 12110000 011233334445666666
Q ss_pred HHHHHHhCCCcc--hHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 008022 155 RELAMRFGSGVS--VYNALINGLCKEH-KIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC 231 (581)
Q Consensus 155 ~~~~~~~~~~~~--~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 231 (581)
++++...|.... .+...++-..... .+++-......... .|++.+|..++......|+.+.|..++.+|.+.|+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 666665533221 1222233333222 23333333322222 47899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH----------------------
Q 008022 232 NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEA---------------------- 289 (581)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---------------------- 289 (581)
+.+.+.|..++-+ .++..-++.++..|...|+.|+..|+...+..+...|....+
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 9888888877765 777888888889999999999999887766665554332111
Q ss_pred --HHHHHHH------------HhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC-ChhhHHHHHHHHHc
Q 008022 290 --VSVSYQM------------EENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN--GCSP-NVVAYTCMVKVLCQ 352 (581)
Q Consensus 290 --~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~ 352 (581)
.+.++.- .-.|.......|...... ..+|.-+..+++...+..- ...+ ++..+..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 1111100 000111112222222221 2245666666666655432 1112 23334444443332
Q ss_pred cCC----------------------hhHHHHHHHHHhhC----------------CCC-------CChhhHHHHHHHhhc
Q 008022 353 NNM----------------------FHQAHSLIEKMAFE----------------NCP-------PNTVTFNTFIKGLCG 387 (581)
Q Consensus 353 ~~~----------------------~~~a~~~~~~~~~~----------------~~~-------~~~~~~~~l~~~~~~ 387 (581)
.-+ ..+..++....... ... +-...-+.++..+++
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 111 01111111111000 000 001112333444444
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCcccHHHHHHHHHHHHhcCCHHHHH
Q 008022 388 CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC--GIQLNIVTYNTILHGVCRAGMVVEAF 465 (581)
Q Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 465 (581)
.-+..+++..-+.....- -...|..++.-+...+..+.|..+..+.... .+..|...+..+.+...+.+....+.
T Consensus 472 e~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 444444433322222211 1145677777777778888888888777543 23345556777788888888888888
Q ss_pred HHHHHHHHCCC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 466 QLLGKMLIEGT-KL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 466 ~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
.++.++.+.-. .| -..++..+.+.....|+.+.-.++++-+.. .|+.-+ ..++....+.++...|++..+...
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPEPEE 623 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcchHHH
Confidence 88888876421 22 244566677777778888888888777766 332221 223334455666666666666554
Q ss_pred HcCCCCCHHhHHHHHHHH
Q 008022 544 NEGICPNFATWNVLVRSL 561 (581)
Q Consensus 544 ~~~~~~~~~~~~~l~~~~ 561 (581)
.. .+|.+.....+.+..
T Consensus 624 qk-yk~~P~~~e~lcrlv 640 (1088)
T KOG4318|consen 624 QK-YKPYPKDLEGLCRLV 640 (1088)
T ss_pred HH-hcCChHHHHHHHHHH
Confidence 32 445555444444333
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.5e-13 Score=117.32 Aligned_cols=220 Identities=14% Similarity=0.066 Sum_probs=115.0
Q ss_pred cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 008022 283 NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSL 362 (581)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 362 (581)
.|+.-.|..-|+..++.... +...|-.+...|....+.++....|+...+.++. ++.+|..-.+...-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 34555555555555444322 1222444444555555555555555555554332 444454444445555555555555
Q ss_pred HHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 008022 363 IEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ 442 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 442 (581)
|++..... |.+...|-.+.-+..+.++++++...|++..+. ++..+..|+.....+..+++++.|.+.|+..++....
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 55555443 334444444444444555666666666665543 2334455666666666666666666666655543111
Q ss_pred -----cc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 443 -----LN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 443 -----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.+ +.+...++.. .-.+++..|..++.++.+.+ +-....+..|+..-.+.|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 1111111111 12367777777777777654 23455677777777777777777777777655
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.2e-14 Score=131.19 Aligned_cols=279 Identities=11% Similarity=0.007 Sum_probs=194.7
Q ss_pred ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCChhHHHHH
Q 008022 285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGC--SPNVVAYTCMVKVLCQNNMFHQAHSL 362 (581)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 362 (581)
+..+|...|..+..+ +..+..+...+..+|...+++++|+.+|+.+.+..+ ..+..+|...+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 344556777788888888888888888888876521 1144566665544322 223333
Q ss_pred HH-HHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008022 363 IE-KMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI 441 (581)
Q Consensus 363 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 441 (581)
+. .+... .+..+.+|..+..+|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 33 33333 36778888888888888888888888888887765 2256677777777777888888888888877532
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHH
Q 008022 442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYT 520 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~ 520 (581)
+-+-..|-.+.-.|.+.++++.|+-.|+++...+ +.+......++..+.+.|+.++|+++++++.. +.| |+..--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHH
Confidence 2233344556667788888888888888888765 44666777788888888888888888888887 455 555555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022 521 SLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSNLGHLGPVYILDDI 577 (581)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 577 (581)
..+..+...+++++|+..++++.+. .|+ ...+..++..|.+.|+.+.|+.-+-=+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 6677777888888888888888873 454 556677777888888888777655433
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=5.5e-10 Score=102.24 Aligned_cols=516 Identities=12% Similarity=0.112 Sum_probs=337.4
Q ss_pred hHhhhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 008022 3 EKLGEKCEIDGVQYLLQQMKVE-GVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRF 81 (581)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (581)
..+..+|+.......|.+.+.. .++....+|...+......|-++-+..++++.++ .++..-...+..++..+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccch
Confidence 4567889999999999988775 3344667888899999999999999999999998 4555677788889999999
Q ss_pred chHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCCc--chHHHHHHHHHccCC
Q 008022 82 SMINPIYSNMKRDG------MEPNVFTYNILLKALCKNNRVD---GAYKLLVEMGNKGCAPDA--VSYTTIVSSICKLGQ 150 (581)
Q Consensus 82 ~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 150 (581)
++|.+.+....... .+.+-..|..+-...+++.+.- ....+++.+... -+|. ..|.+|.+-|.+.|.
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence 99999998876431 1444456666666555543332 233344444333 2333 357889999999999
Q ss_pred HHHHHHHHHHhCCC---cchHHHHHHHHHh----------------cC------ChhHHHHHHHHHHHCCC---------
Q 008022 151 VEEARELAMRFGSG---VSVYNALINGLCK----------------EH------KIEEAFWLLCEMVDRGI--------- 196 (581)
Q Consensus 151 ~~~a~~~~~~~~~~---~~~~~~l~~~~~~----------------~~------~~~~a~~~~~~~~~~~~--------- 196 (581)
+++|..++++.-.. +.-|..+..+|.. .+ +++-....|+.+...+.
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 99999999887222 2222222222221 11 13334444555544321
Q ss_pred --CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008022 197 --DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN------IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLP 268 (581)
Q Consensus 197 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (581)
+-+..+|..-.. ...|+..+-...+.+.... +.|. ...|..+...|-..|+.+.|..+|++..+...+.
T Consensus 344 Qn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred cCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 112223332222 2356667777777777654 2222 3457778899999999999999999988764332
Q ss_pred C---HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-----------C------cHHhHHHHHHHHHhcCCHHHHHHHH
Q 008022 269 N---VVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCP-----------P------NVTTYSALIDGFAKAGNLLGASQIW 328 (581)
Q Consensus 269 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (581)
- ..+|..-...=.+..+++.|+++++....-.-+ + +...|...+..--..|-++....+|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 234555555556777888999988876532211 1 2334555666666778889999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHhhc---CCChHHHHHHHHHHhhC
Q 008022 329 NRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN-TVTFNTFIKGLCG---CGRVDWAMKLLDQMKQY 404 (581)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 404 (581)
+++++..+. ++.........+-...-++++.+++++-+..-..|+ ..+|+..+.-+.+ ...++.|..+|++..+
T Consensus 501 driidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 501 DRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 999887654 444444445556667778999999998766533344 3455555444432 3578999999999998
Q ss_pred CCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022 405 ECLPNITTYNELLDG--LLRVNRVKEAFELVTEIEKCGIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480 (581)
Q Consensus 405 ~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 480 (581)
+++|...-+..|+.+ -.+.|-...|+.++++.-.. +++. ...|+..+.--...=-+.....+|+++++. -|+.
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~ 655 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDS 655 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChH
Confidence 666655543333333 23468888999999997654 3333 346777766554444456667888888875 3444
Q ss_pred HH---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHH
Q 008022 481 IT---FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQE 534 (581)
Q Consensus 481 ~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 534 (581)
.. ....+..-.+.|..+.|..++....+.. .| +...|.+.-..-.++|+-+.
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~~--dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQIC--DPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC--CCcCChHHHHHHHHHHHhcCCHHH
Confidence 43 3344566678999999999999888743 45 66778888777889998433
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=2.8e-12 Score=110.40 Aligned_cols=292 Identities=13% Similarity=0.063 Sum_probs=196.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 008022 248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQI 327 (581)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (581)
.|++.+|+++..+-.+.+-. ....|..-..+..+.|+.+.+-.++.+..+....++....-...+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56777777776665555422 22234444455566677777777776666653334444555555666667777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCh-------hhHHHHHHHhhcCCChHHHHHHHHH
Q 008022 328 WNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNT-------VTFNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
..++.+.++. ++.......++|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7776665433 4556666667777777777777777777766654433 3455555555555555555556666
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022 401 MKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 480 (581)
.... ...++..-..++.-+...|+.++|.++.++..+.+..|+.. ..-.+.+.++.+.-++..++..+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5332 23455566677778888899999999988888876666521 2234567788888888887777663 4466
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN 550 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 550 (581)
..+..++..|.+.+.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+..+|.+..++.+..-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 7788888999999999999999998887 678888999999999999999999988888764433444
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.3e-12 Score=110.94 Aligned_cols=285 Identities=11% Similarity=0.059 Sum_probs=232.1
Q ss_pred cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 008022 283 NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSL 362 (581)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 362 (581)
.|++.+|.+...+-.+.+.. ....|..-.++-.+.|+.+.+..++.++.+....++....-...+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999997777633 34456666677788999999999999998875456666777788889999999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHH
Q 008022 363 IEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT-------TYNELLDGLLRVNRVKEAFELVTE 435 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 435 (581)
+.++...+ |-++.......++|.+.|++.....++..+.+.+.-.+.. +|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998876 6788899999999999999999999999999988765543 455566655555666666667777
Q ss_pred HHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022 436 IEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD 515 (581)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 515 (581)
.... .+.++..-.+++.-+.+.|+.++|.++..+.++.+..|. + ...-.+.+-++++.=++..++-....+. +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 6554 355677777888899999999999999999999876655 2 2223566788999888888888775544 4
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022 516 IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
+..+.+|+..|.+.+.|.+|...|+..++ ..|+..++..+..++.+.|+..+|.+..++.+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 47788999999999999999999999887 57999999999999999999999999888754
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.6e-12 Score=108.37 Aligned_cols=287 Identities=15% Similarity=0.173 Sum_probs=209.8
Q ss_pred hcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHccCC
Q 008022 282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV------AYTCMVKVLCQNNM 355 (581)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ 355 (581)
-+++.++|.+.|-+|.+.. +.+..+..++.+.|.+.|..+.|+++.+.+.++ ||.. ....|.+-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3577888999988888753 445566677888888899999999998888876 4432 34556677888899
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 008022 356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI----TTYNELLDGLLRVNRVKEAFE 431 (581)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 431 (581)
++.|+.+|..+.+.+ .--......|+..|....+|++|+++-.++.+.+..+.. ..|.-+...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999998888764 455677788888898889999999988888776644432 246677777778888888999
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 008022 432 LVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE 511 (581)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 511 (581)
++.+..+.+ +.....--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++...++.++.+
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--- 277 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--- 277 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---
Confidence 988888764 3334444456777888899999999998888876555567788888899999999999999988887
Q ss_pred CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---cCCCChHHHHHHHhh
Q 008022 512 WNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSN---LGHLGPVYILDDIMA 579 (581)
Q Consensus 512 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 579 (581)
..+....-..+........-.+.|..++.+-+.. .|+...+..++..-... |...+-+..+++|+.
T Consensus 278 ~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 TNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3455555555665555555567777776665553 68888777777754432 334555566666654
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2e-13 Score=125.03 Aligned_cols=285 Identities=13% Similarity=0.039 Sum_probs=226.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHH
Q 008022 249 GRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS--CPPNVTTYSALIDGFAKAGNLLGASQ 326 (581)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 326 (581)
-+..+|...|..+...- .-...+...+..+|...+++++|.++|+.+.+.. .-.+..+|...+..+-+ +-+..
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35678888898855542 2244667788899999999999999999998764 12366777777654432 22222
Q ss_pred HH-HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022 327 IW-NRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE 405 (581)
Q Consensus 327 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 405 (581)
.+ +.+.+.. +..+.+|-.+..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 2333332 3367899999999999999999999999999875 4578888888888888899999999999988643
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022 406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI 485 (581)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 485 (581)
+.+...|--+...|.+.++++.|.-.|+.+.+-+ |.+......+...+.+.|+.++|+.+++++...+ +.|+..-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 1233355567778999999999999999999864 5577778888889999999999999999999876 446666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG 546 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (581)
.+..+...+++++|+..++++.+ +.| +...+..++..|.+.|+.+.|+.-|--|.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 78889999999999999999999 678 56678889999999999999999999998743
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-10 Score=108.15 Aligned_cols=406 Identities=13% Similarity=0.008 Sum_probs=247.7
Q ss_pred CCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc-HH
Q 008022 130 GCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVIT-YS 204 (581)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 204 (581)
.+..|+..|..+.-+..+.|+++.+.+.|++. -.....|+.+...+...|.-..|..++++.......|+..+ +-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34557778888888889999999999999988 34566788888889999998999999888766543344333 33
Q ss_pred HHHHHHH-ccCChhHHHHHHHHHHHc--CC--CCCcccHHHHHHHHHc-----------cCCHHHHHHHHHHHHhCCCCC
Q 008022 205 TIISSLC-DVGNVETSLGILGQMFVR--GC--NPNIHSFTSLLKGYLL-----------GGRTHEASDLWNRMIREGFLP 268 (581)
Q Consensus 205 ~l~~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~ 268 (581)
..-..|. +.+..+++...-.++... +. ...+..+..+.-+|.. .....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3334443 456677777777666652 11 1123334444333332 12234677788888776533
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 269 NVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVK 348 (581)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (581)
|+.....+.--|+..++.+.|.+..++..+-+...++..|..+.-.+...+++.+|+.+.+.....-. .|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhhh
Confidence 33333334445777889999999999988876677888898888888889999999999887765411 11111111122
Q ss_pred HHHccCChhHHHHHHHHHhhC---------------------C-------CCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022 349 VLCQNNMFHQAHSLIEKMAFE---------------------N-------CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
.-..-++.++++.....+... + ......++..+.......+........
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 222345555555544443211 0 000111111111111100000000000
Q ss_pred HhhCCCC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 401 MKQYECL--PN------ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML 472 (581)
Q Consensus 401 ~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 472 (581)
+....+. |+ ...|......+.+.++.++|...+.+..+.. +.....|......+...|..++|.+.|...+
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1111111 11 1134445556667777777777777776652 4455566666667777788888888887777
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHHHHHH--HHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 473 IEGTKLDAITFNIIIYAYCKQGKVNNAIQ--LLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 473 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
..+ +.++.+...++.++.+.|+..-|.. ++..+.+ +.| +...|..++..+.+.|+.+.|.+.|+.+.+.
T Consensus 712 ~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 754 4466677778888888887766666 7777777 456 6677888888888888888888888877653
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.62 E-value=4.1e-10 Score=103.26 Aligned_cols=451 Identities=14% Similarity=0.085 Sum_probs=195.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 008022 42 RVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYK 121 (581)
Q Consensus 42 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 121 (581)
..+++...+++.+.+++ ..+...++.....-.+...|+.++|........+.+ ..+.+.|..+.-.+...+++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 44444444444444444 111222222222222333444444544444444432 2333444444444444445555555
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-C
Q 008022 122 LLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG-I 196 (581)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 196 (581)
.|......+.. |...+..+.-.-++.|+++.....-.++ +.....|..++.+..-.|++..|..++++..+.. -
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55544443211 3333333333334444443333332222 3334445555555555555555555555554442 1
Q ss_pred CCCcccHHHHH------HHHHccCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 008022 197 DPNVITYSTII------SSLCDVGNVETSLGILGQMFVRGCNPN-IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN 269 (581)
Q Consensus 197 ~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (581)
.|+...+.... ....+.|.++.|++.+...... ..| ...-..-...+.+.++.++|..++..+... .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 23333332211 2234455555565555443222 111 111122334455566666666666666655 344
Q ss_pred HHhHHHHH-HHHHhcCChhhHH-HHHHHHHhCCCCCcHHhHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 008022 270 VVAYSTLI-HGLCSNGSMDEAV-SVSYQMEENSCPPNVTTYSAL-IDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCM 346 (581)
Q Consensus 270 ~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 346 (581)
...|...+ .++.+..+..++. .+|....+.- |....-..+ +.......-.+....++....+.|+++ ++..+
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 44433332 3332233333333 3444333321 111111111 111111111223334444445555433 22222
Q ss_pred HHHHHccCChhHHHHHHHHH----hhCC----------CCCChhhH--HHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh
Q 008022 347 VKVLCQNNMFHQAHSLIEKM----AFEN----------CPPNTVTF--NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI 410 (581)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~----~~~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 410 (581)
...|-.....+-..++...+ ...+ -+|....| ..++..+-..|+++.|...++....+. |+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chH
Confidence 22221111111111111111 0000 13343333 345566667777777777777666542 443
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----CHH-HH
Q 008022 411 T-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL-----DAI-TF 483 (581)
Q Consensus 411 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~ 483 (581)
. .|..-.+.+...|.+++|..++++..+.+ .+|...-..-+....++++.++|.++.....+.|... +.. .|
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHH
Confidence 2 44444566666777777777777776654 4454444445555566777777777777776665310 001 12
Q ss_pred HH--HHHHHHhcCCHHHHHHHHHHHh
Q 008022 484 NI--IIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 484 ~~--l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
.. -+.+|.+.|++..|++-|..+.
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 11 1356666666666666555443
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.61 E-value=4.8e-10 Score=102.82 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=100.8
Q ss_pred hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHH
Q 008022 77 AENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARE 156 (581)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 156 (581)
..+++...+++.+.+.+. .+-...+.....-.+...|+.++|..........++. +...|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 445555555555555542 2333334433333444455555555555554443222 44445555444555555555555
Q ss_pred HHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcC-C
Q 008022 157 LAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRG-C 231 (581)
Q Consensus 157 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~ 231 (581)
.+... +.|...+..+.-.-++.++++.....-..+.+.. +.....|..+..++.-.|+...|..+++...+.. -
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555 4455555555555555555555555444444431 1123344445555555555555555555555442 1
Q ss_pred CCCcccHHHH------HHHHHccCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 008022 232 NPNIHSFTSL------LKGYLLGGRTHEASDLWNRMIREGFLPNVV-AYSTLIHGLCSNGSMDEAVSVSYQMEEN 299 (581)
Q Consensus 232 ~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (581)
.|+...+... .......|..+.|.+.+...... ..|-. .-..-...+.+.+++++|..++..+...
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 2333333221 12233445555555544433222 11111 1222233445555555555555555554
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.9e-10 Score=95.15 Aligned_cols=309 Identities=17% Similarity=0.083 Sum_probs=212.5
Q ss_pred ccCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 008022 247 LGGRTHEASDLWNRMIRE-GFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS 325 (581)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 325 (581)
..++...+...+-.+... -++-|......+..++...|+.++|+..|++.+..+ +.+..........+.+.|+.+...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence 344544444444333333 234466678888888999999999999998877653 223333444444556778888887
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022 326 QIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE 405 (581)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 405 (581)
.+...+.... .-....|-.-.......++++.|+.+-++.++.+ +.+...+-.-..++...+++++|.-.|+......
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7777766542 1122233333444566788899999988888764 4455555555567778899999998898887654
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008022 406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL-HGVC-RAGMVVEAFQLLGKMLIEGTKLDAITF 483 (581)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 483 (581)
+-+...|.-|+.+|...|++.+|.-+-....+. .+.+..++..+. ..+. ...--++|.+++++.++.. +.-....
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV 441 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAV 441 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHH
Confidence 346778999999999999999998887776654 355566665552 2222 2233488999998888753 2234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022 484 NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS 563 (581)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (581)
+.++..+...|.+++++.++++... ..||....+.|+..+...+.+++|.+.|..++. +.|+..--..=++.+-+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHh
Confidence 7788889999999999999999887 458888889999999999999999999999887 45654433333444444
Q ss_pred ccC
Q 008022 564 NLG 566 (581)
Q Consensus 564 ~g~ 566 (581)
+.+
T Consensus 517 ~~~ 519 (564)
T KOG1174|consen 517 SDD 519 (564)
T ss_pred ccC
Confidence 433
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=2.4e-10 Score=108.44 Aligned_cols=90 Identities=13% Similarity=0.177 Sum_probs=74.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 008022 52 MFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGC 131 (581)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 131 (581)
++..+...|+.|+-.+|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4555667788899889999999999999988888 8888887777788888999888888888877665
Q ss_pred CCCcchHHHHHHHHHccCCHHH
Q 008022 132 APDAVSYTTIVSSICKLGQVEE 153 (581)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~ 153 (581)
.|.+.+|+.|...|...|+...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 6788889999999998888654
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.54 E-value=3.9e-10 Score=106.21 Aligned_cols=293 Identities=15% Similarity=0.134 Sum_probs=151.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 008022 34 ISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKN 113 (581)
Q Consensus 34 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (581)
......+...|++++|++.++.... .+.............+.+.|++++|...|..+.+.+ |.|...|..+..+..-.
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence 3344445566666666666655443 222334444555566666666666666666666654 33333333344333111
Q ss_pred -----CChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHH-HHHHh--CCCcchHHHHHHHHHhcCChhHHH
Q 008022 114 -----NRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARE-LAMRF--GSGVSVYNALINGLCKEHKIEEAF 185 (581)
Q Consensus 114 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 185 (581)
.+.+...++++++... .|.......+.-.+..-..+..... .+... ..-+.+|+.+-..|....+..-..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 2345555556655444 2333332222222222111111111 11111 222344444444444333333334
Q ss_pred HHHHHHHHC----C----------CCCCc--ccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHcc
Q 008022 186 WLLCEMVDR----G----------IDPNV--ITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN-IHSFTSLLKGYLLG 248 (581)
Q Consensus 186 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 248 (581)
+++...... + -+|.. .++..+...|...|++++|+..+++.+++ .|+ +..|..-.+.+-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 444443322 1 11222 23344556666777777777777777776 344 55666667777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH--------HhHHHHHHHHHhcCC
Q 008022 249 GRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV--------TTYSALIDGFAKAGN 320 (581)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~ 320 (581)
|++.+|.+.++.....+.. |...-+.....+.+.|+.++|.+++....+.+..|.. ........+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777776533 5555556666677777777777777776665432211 112344566677777
Q ss_pred HHHHHHHHHHHHh
Q 008022 321 LLGASQIWNRMIS 333 (581)
Q Consensus 321 ~~~a~~~~~~~~~ 333 (581)
+..|+..|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655544
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=3.2e-09 Score=99.59 Aligned_cols=404 Identities=13% Similarity=-0.010 Sum_probs=268.2
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh------CCCcch
Q 008022 94 DGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF------GSGVSV 167 (581)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~~~ 167 (581)
..++.++.+|..+.-++...|+++.+.+.|++....-+ -....|..+...|...|.-..|..+++.. |++...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 34567888999999999999999999999998876533 36677888889999999999999998887 233444
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHHC--CC--CCCcccHHHHHHHHHcc-----------CChhHHHHHHHHHHHcCC
Q 008022 168 YNALINGLC-KEHKIEEAFWLLCEMVDR--GI--DPNVITYSTIISSLCDV-----------GNVETSLGILGQMFVRGC 231 (581)
Q Consensus 168 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~ 231 (581)
+-.....|. +-+..++++....+.... +. ...+..|..+.-+|... ....++++.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 444444444 456677777766666552 11 12334455444444322 12355777788877765
Q ss_pred CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHH
Q 008022 232 NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSAL 311 (581)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (581)
+.|+.+...+.--|+..++...|.+...+..+.+...+...|..|.-.+...+++.+|+.+.+.....- +.|......-
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 224444444555577889999999999999988667788899999999999999999999988766531 1111111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---------------------C-------CCCChhhHHHHHHHHHccC---ChhHHH
Q 008022 312 IDGFAKAGNLLGASQIWNRMISN---------------------G-------CSPNVVAYTCMVKVLCQNN---MFHQAH 360 (581)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~---~~~~a~ 360 (581)
+..-...++.+++......+... | ......++..+.......+ ..+..
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 22222244444444333322210 0 0001112222211111000 00111
Q ss_pred HHHHHHhhCCCCCC--------hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022 361 SLIEKMAFENCPPN--------TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL 432 (581)
Q Consensus 361 ~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 432 (581)
+......|+ ...|......+.+.++.++|...+.+..... +-....|......+...|+.++|.+.
T Consensus 633 -----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 633 -----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred -----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 111111121 1234566777888899999988888876644 44566777777888889999999999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022 433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQ--LLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG 509 (581)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (581)
|......+ |.++.+..++...+.+.|+..-|.. ++..+.+.+ +.+...|..++..+-+.|+.+.|.+.|..+.+.
T Consensus 707 f~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 707 FLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99988764 5567788899999999998877777 999999986 668999999999999999999999999998873
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.6e-12 Score=107.18 Aligned_cols=232 Identities=13% Similarity=0.046 Sum_probs=196.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC
Q 008022 309 SALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC 388 (581)
Q Consensus 309 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (581)
..+..+|.+.|.+.+|+..++...+. .|-+.||..|.++|.+..+++.|+.++.+-.+. .|-+........+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788999999999999999988776 456677888999999999999999999998876 366666667788888899
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008022 389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLL 468 (581)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 468 (581)
++.++|.++|+...+.. +.+++....+...|.-.++++-|+..++.+...| ..++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998765 4567777777888888999999999999999998 458889999999999999999999999
Q ss_pred HHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 469 GKMLIEGTKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 469 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
++.+..-..| -..+|..+.......||+.-|.+.|+-+.. .+| +..+++.|...-.+.|++++|..+++.+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s- 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS- 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-
Confidence 9998764333 456789999999999999999999999887 234 677899999888999999999999999876
Q ss_pred CCCCC
Q 008022 546 GICPN 550 (581)
Q Consensus 546 ~~~~~ 550 (581)
+.|+
T Consensus 458 -~~P~ 461 (478)
T KOG1129|consen 458 -VMPD 461 (478)
T ss_pred -hCcc
Confidence 3454
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.5e-09 Score=96.27 Aligned_cols=454 Identities=14% Similarity=0.098 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022 32 VFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALC 111 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (581)
.+..=++.+...|++++|.+...++...+ +.+...+..-+.++++.+.|++|+.+.+.-... ..+...+..-.-+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33444555666777777777777777655 345556666666677777777777544332211 111111112223334
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-CCCcchHHHHHHHHHh-cCChhHHHHHHH
Q 008022 112 KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-GSGVSVYNALINGLCK-EHKIEEAFWLLC 189 (581)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~a~~~~~ 189 (581)
+.+..++|+..++-.... +..+...-...+.+.|++++|..+++.+ ..+...+...+++-+. .+-.-.+ +
T Consensus 91 rlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~--- 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-Q--- 162 (652)
T ss_pred HcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-H---
Confidence 677777777777622211 2234455556667777777777777777 4444433333322111 1100111 1
Q ss_pred HHHHCCCCCCcccHHHHH---HHHHccCChhHHHHHHHHHHHcC-------CCCC-------cccHHHHHHHHHccCCHH
Q 008022 190 EMVDRGIDPNVITYSTII---SSLCDVGNVETSLGILGQMFVRG-------CNPN-------IHSFTSLLKGYLLGGRTH 252 (581)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~~~~~ 252 (581)
.+......| ..+|..+. ..+...|++.+|+++++.....+ ..-+ ...-..+..++-..|+..
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222222 33444333 34556788888888877762211 0000 011223555666788899
Q ss_pred HHHHHHHHHHhCCCCCCHHh----HHHHHHHHHhcCCh-h-hHHHHHHHHHhCCC----------CCcHHhHH-HHHHHH
Q 008022 253 EASDLWNRMIREGFLPNVVA----YSTLIHGLCSNGSM-D-EAVSVSYQMEENSC----------PPNVTTYS-ALIDGF 315 (581)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~-~-~a~~~~~~~~~~~~----------~~~~~~~~-~l~~~~ 315 (581)
+|..++..+.+.... |... .|.|+.. ....++ + .++..++....... .......+ .++..|
T Consensus 242 ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888877532 3322 2233222 111111 1 11112111111000 00111111 122222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-HH-HccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHH
Q 008022 316 AKAGNLLGASQIWNRMISNGCSPNVVAYTCMVK-VL-CQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDW 393 (581)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 393 (581)
.+..+.+.++-.... +..|... +..++. +. ++...+..+..++..........+..+.-..++.....|+++.
T Consensus 320 --tnk~~q~r~~~a~lp--~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLP--GMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred --hhhHHHHHHHHHhCC--ccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 222333333332221 1223332 333333 22 2233577788888877765422234556667788889999999
Q ss_pred HHHHHH--------HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCcccHHH----HHHHHHHHHhcC
Q 008022 394 AMKLLD--------QMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC--GIQLNIVT----YNTILHGVCRAG 459 (581)
Q Consensus 394 a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~----~~~l~~~~~~~~ 459 (581)
|.+++. .+.+.+..|- +...+...+.+.++.+.|..++.+.... .-.+.... +..++..-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 5555554443 4455667777777777777777766532 01122222 333333445679
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.++|..+++++.+.+ ++|..+...++.+|++. |++.|..+-+.+..
T Consensus 473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred chHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 9999999999999875 77899999999999876 88899888877654
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=1.2e-11 Score=120.93 Aligned_cols=215 Identities=13% Similarity=0.071 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---------ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCCh
Q 008022 321 LLGASQIWNRMISNGCSPNVVAYTCMVKVLC---------QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRV 391 (581)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 391 (581)
.++|...|++..+..+. +...+..+..++. ..+++++|...+++....+ |.+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45677777776665322 2334444443332 2234677777777777664 55666777777777777778
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 392 DWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM 471 (581)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 471 (581)
++|...|++..+.+ +.+...+..+...+...|++++|...++...+.. +.+...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888887777665 3345566667777777788888888887777653 222223333344455577777787777777
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 472 LIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.....+.++..+..++.++...|++++|...+.++.. ..|+ ....+.+...|...| ++|...++++.+
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 6653222444566677777777888888887777665 2343 334455555666666 466666666644
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.7e-09 Score=97.01 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=68.6
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCH
Q 008022 72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQV 151 (581)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (581)
++.+...+++++|.+....+...+ +.+...+..-+.++.+.++|++|+.+.+.-... ..+..-+..-+-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455666777778887777777665 556666667677777778888777555432211 10111111122333456666
Q ss_pred HHHHHHHHHh-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008022 152 EEARELAMRF-GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDR 194 (581)
Q Consensus 152 ~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (581)
++|+..++.. +.+..+...-.+.+.+.+++++|+.+|+.+.++
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 6666666644 223334444555566666666666666666555
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.5e-09 Score=91.87 Aligned_cols=302 Identities=14% Similarity=0.060 Sum_probs=224.1
Q ss_pred CCCHHhHHHHHHH--HHhcCChhhHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hh
Q 008022 267 LPNVVAYSTLIHG--LCSNGSMDEAVSVSYQMEENS-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNV-VA 342 (581)
Q Consensus 267 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 342 (581)
.|........+.+ .+-.++...+...+-.+.... ++.|......+..++...|+..+|+..|++....+ |+. ..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence 3333333333433 334455556655555554433 67788899999999999999999999999987653 332 23
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 008022 343 YTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR 422 (581)
Q Consensus 343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (581)
.......+.+.|++++...+...+.... .-....|-.-........++..|+.+-++.++.+ +.+...+..-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3334455677888888888877776542 2233333333444456678999999998888765 3355566666778889
Q ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHH-hcCCHHHHH
Q 008022 423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIII-YAYC-KQGKVNNAI 500 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 500 (581)
.+++++|.-.|+...... |.+..+|..|+.+|...|.+.+|.-+-+...+. ++.+..++..++ ..+. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999988763 568899999999999999999999988887765 355666666663 3333 333468899
Q ss_pred HHHHHHhcCCCCCCCH-HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 501 QLLDRIRGGGEWNPDI-ISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 501 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+++++... ++|+. ...+.+...+...|..++++.++++.+. ..||......+.+.+...+.+.+|.+.+...+.
T Consensus 425 kf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 425 KFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999888 67864 4677888889999999999999999987 578999999999999999999999998887765
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=2.6e-11 Score=106.18 Aligned_cols=196 Identities=12% Similarity=0.031 Sum_probs=83.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022 342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL 421 (581)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (581)
.+..+...+...|++++|...+++..... |.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555544332 3333444444444444555555555554444432 122233344444444
Q ss_pred hcCCHHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 008022 422 RVNRVKEAFELVTEIEKCGI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAI 500 (581)
Q Consensus 422 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 500 (581)
..|++++|.+.++....... +.....+..+...+...|++++|...+++..... +.+...+..++..+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444443211 1122233333444444444444444444444432 222333444444444444444444
Q ss_pred HHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 501 QLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
..++++.+.. +++...+..++..+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444310 112333333444444444444444444443
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=3.6e-11 Score=117.59 Aligned_cols=251 Identities=14% Similarity=0.127 Sum_probs=178.4
Q ss_pred ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 008022 285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFA---------KAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM 355 (581)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 355 (581)
+.++|...+++..+.. |.+...+..+..++. ..+++++|...++++.+..+. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 3567888888887764 334555655555443 224478899999998887543 66777788888889999
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008022 356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTE 435 (581)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 435 (581)
+++|...+++....+ |.+...+..+..++...|++++|...+++..+.+.. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999998875 667778888889999999999999999999887622 222333444456668899999999999
Q ss_pred HHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022 436 IEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD 515 (581)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 515 (581)
+.+...+.++..+..+..++...|++++|...+.++.... +.+....+.+...|...| ++|...++.+.+.....|.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 8765323345567777888889999999999998876642 234445566667777777 4788877777664444443
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 516 IISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
...+ +...+.-.|+.+.+..+ +++.+.
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3333 33345556776666666 777654
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.1e-11 Score=103.47 Aligned_cols=234 Identities=11% Similarity=0.032 Sum_probs=192.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 008022 274 STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQN 353 (581)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 353 (581)
+.+..+|.+.|-+.+|.+.++...+. .|-+.||..+-.+|.+..++..|+.++.+-.+. ++-|+.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45778888999999999988887775 456778888889999999999999999887775 223444455677888888
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008022 354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELV 433 (581)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 433 (581)
++.++|.++++...+.. +.+......+...|.-.++++.|..+|+++.+.|+. +...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988775 667777777788888889999999999999999854 8888999988999999999999999
Q ss_pred HHHHHcCCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 008022 434 TEIEKCGIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE 511 (581)
Q Consensus 434 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 511 (581)
+.....--.|+ ...|-.+.......||+.-|.+.|+-.+..+ ..+...++.|+-.-.+.|++++|..++..+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--- 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--- 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh---
Confidence 98876543344 3456677777778899999999999998875 55788999999999999999999999999988
Q ss_pred CCCCH
Q 008022 512 WNPDI 516 (581)
Q Consensus 512 ~~p~~ 516 (581)
+.|+.
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 55653
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=8e-11 Score=103.10 Aligned_cols=198 Identities=14% Similarity=0.044 Sum_probs=130.6
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022 375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG 454 (581)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (581)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4555666677777777777777777776543 3345566666777777777777777777777653 4455566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022 455 VCRAGMVVEAFQLLGKMLIEGT-KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM 532 (581)
Q Consensus 455 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 532 (581)
+...|++++|.+.++++..... +.....+..++.++...|++++|.+.+.++.. ..| +...+..++..+...|++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCH
Confidence 7777777777777777776421 22344566667777777777777777777776 234 455666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022 533 QEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 533 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
++|...++++.+. .+++...+..+...+...|+.++|..+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777777664 23344555555666666777777777666554
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.43 E-value=2.6e-09 Score=102.86 Aligned_cols=179 Identities=13% Similarity=-0.018 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 008022 11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSN 90 (581)
Q Consensus 11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 90 (581)
...|+..|-+..+.++. =...|..+...|....+...|.+.|+.+...+. .+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55566666665555443 344666777777777777777777777766543 4566677777777777777777766333
Q ss_pred HHhCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCC
Q 008022 91 MKRDGMEPNVF--TYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSG 164 (581)
Q Consensus 91 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~ 164 (581)
..+.. +.-.. -|..+.-.+...++...|..-|+...+..+ .|...|..+..+|.+.|++..|.+.|.+. |.+
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 32221 11111 222234445566777777777777666532 26667777777777777777777777666 222
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008022 165 VSVYNALINGLCKEHKIEEAFWLLCEMVD 193 (581)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (581)
...--......+..|.+.++...+.....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22222233344566777777776666543
No 77
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=5.3e-08 Score=92.21 Aligned_cols=360 Identities=15% Similarity=0.128 Sum_probs=223.2
Q ss_pred CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-C-------CCC
Q 008022 29 SEGVFISVIN--SYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD-G-------MEP 98 (581)
Q Consensus 29 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~ 98 (581)
++.+...++. .|..-|+.+.|.+-.+.+.. ..+|..+.+.|.+.++++-|.-++..|... | .+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5555555554 46778999999988887754 468999999999999999998888777543 1 111
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh--CCCcchHHHHHHHHH
Q 008022 99 NVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF--GSGVSVYNALINGLC 176 (581)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l~~~~~ 176 (581)
+...=..+.......|..++|..+|.+-++. ..|-..|...|.+++|.++.+.- -.-..+|......+-
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 1122233444455889999999999988764 34556788899999999987765 222456777777778
Q ss_pred hcCChhHHHHHHHHHHHCCC-------------------CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc
Q 008022 177 KEHKIEEAFWLLCEMVDRGI-------------------DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHS 237 (581)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (581)
..++.+.|++.|++.....+ ..|...|.-....+-..|+.+.|+.+|.... -
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------D 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------h
Confidence 88899999988876422100 1122223223333344566666666665543 2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022 238 FTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK 317 (581)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (581)
|-++++..+-.|+.++|.++-++- -|......|.+.|-..|++.+|..+|.+.+. +...|+.|-.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE 1005 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE 1005 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 455666677788888888776542 2666677888999999999999998877653 3333333322
Q ss_pred cC---------------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH--------HhhC--CCC
Q 008022 318 AG---------------NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEK--------MAFE--NCP 372 (581)
Q Consensus 318 ~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~ 372 (581)
.+ +.-.|.++|++.- . -....+..|-+.|.+.+|+++--. ++.. ...
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 22 2222333333221 0 112234456667777766665221 1111 223
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHHHHhh----------CCC----------------CCCh----hhHHHHHHHHHh
Q 008022 373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ----------YEC----------------LPNI----TTYNELLDGLLR 422 (581)
Q Consensus 373 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~----------------~~~~----~~~~~l~~~~~~ 422 (581)
.|+...+...+.++...++++|..++-...+ .++ .|+. ..+..+...|.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777776654322 111 1222 234556677788
Q ss_pred cCCHHHHHHHHHH
Q 008022 423 VNRVKEAFELVTE 435 (581)
Q Consensus 423 ~~~~~~a~~~~~~ 435 (581)
+|.+..|-+-|.+
T Consensus 1158 QG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQ 1170 (1416)
T ss_pred ccchHHHHHHHhh
Confidence 8887777665544
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=4.6e-10 Score=89.56 Aligned_cols=203 Identities=14% Similarity=0.002 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL 110 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (581)
.+...+.-.|.+.|++..|..-+++.++..+ .+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 4677889999999999999999999998765 667789999999999999999999999999886 66778899999999
Q ss_pred HhcCChhHHHHHHHHHhhCCCCC-CcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHH
Q 008022 111 CKNNRVDGAYKLLVEMGNKGCAP-DAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAF 185 (581)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~ 185 (581)
+.+|++++|...|++....-.-+ -..+|..+.-+..+.|+++.|...+++. |....+...+.....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999988763222 3457888888889999999999999887 777888888899999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccH
Q 008022 186 WLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSF 238 (581)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 238 (581)
..++.....+. ++..+....|+.--..|+.+.+.+.=.++... .|...-+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 99988888765 78888888888888889888887776666655 4554443
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.40 E-value=1.2e-08 Score=95.28 Aligned_cols=396 Identities=15% Similarity=0.088 Sum_probs=193.5
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh--CCCcchHHHHHHHHHhcCChhHHHHHH
Q 008022 111 CKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF--GSGVSVYNALINGLCKEHKIEEAFWLL 188 (581)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (581)
.-.+++.+|..+|-+- ......+.+|....++++++.+.+.. |.-...-.+.++++...|+-+.|-++-
T Consensus 542 il~kkfk~ae~ifleq---------n~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 542 ILEKKFKEAEMIFLEQ---------NATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred HHHhhhhHHHHHHHhc---------ccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 3445666666665432 11234566777777788887776655 222333455566666677766665432
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC---
Q 008022 189 CEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG--- 265 (581)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 265 (581)
. .+..+. ..|..|.+.|.+..|.+....=.. +..|......+..++.+..-+++|-++|+++..-.
T Consensus 613 ----~----sdgd~l-aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkal 681 (1636)
T KOG3616|consen 613 ----E----SDGDGL-AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKAL 681 (1636)
T ss_pred ----c----ccCccH-HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHH
Confidence 1 122332 457778888877766654322111 12244444444444555555555555555443210
Q ss_pred -------------------CCCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 008022 266 -------------------FLPNVVA-YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS 325 (581)
Q Consensus 266 -------------------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 325 (581)
++....+ -......+...|+++.|+..|-+.. .....+.+-.....|..|+
T Consensus 682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhH
Confidence 0000000 0001111222233333332221111 1122233344455566666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022 326 QIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE 405 (581)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 405 (581)
.+++.+..... ...-|..+...|...|+++.|.++|.+. ..++..|.+|.+.|+++.|.++-.+...
T Consensus 753 ~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~-- 819 (1636)
T KOG3616|consen 753 SILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG-- 819 (1636)
T ss_pred hHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--
Confidence 66666555421 2233455556666666666666666442 2244455666666666666665544432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022 406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI 485 (581)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 485 (581)
.......|..-..-+-++|++.+|.+++-.+. .|+. .+..|-+.|..+..+++.++-.. ..-..|...
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~ 887 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKH 887 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHH
Confidence 22233344444445556666666666554332 2332 24456666666666666555432 112344556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcc
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNL 565 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (581)
+..-|-..|+...|..-|-++.+ |..-+..|...+.|++|-++-+. .| ..|..- +++....++-
T Consensus 888 f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k--~v~flwaksi 951 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEK--HVAFLWAKSI 951 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHH--HHHHHHHHhh
Confidence 66667777777777766655544 33444556666666666554332 22 122222 2222333433
Q ss_pred CCCChHHHHHH
Q 008022 566 GHLGPVYILDD 576 (581)
Q Consensus 566 ~~~~a~~~~~~ 576 (581)
.-+.|.+++++
T Consensus 952 ggdaavkllnk 962 (1636)
T KOG3616|consen 952 GGDAAVKLLNK 962 (1636)
T ss_pred CcHHHHHHHHh
Confidence 44566676664
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=3.1e-09 Score=100.24 Aligned_cols=290 Identities=18% Similarity=0.151 Sum_probs=170.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-c--
Q 008022 140 TIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLC-D-- 212 (581)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-- 212 (581)
.....+...|++++|++.+... .............+.+.|+.++|..++..+.+.+ |+...|...+..+. -
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3455667778888888887776 3445556667778888888888888888888773 45555444433333 1
Q ss_pred ---cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHH-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 008022 213 ---VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTH-EASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDE 288 (581)
Q Consensus 213 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (581)
..+.+....+++++... .|...+...+.-.+.....+. .+..++..+...|+++ +|+.+-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 12456667777777665 344444444433333323332 3445555666666442 34444444544444343
Q ss_pred HHHHHHHHHhC----C----------CCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 008022 289 AVSVSYQMEEN----S----------CPPNV--TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ 352 (581)
Q Consensus 289 a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (581)
...++...... + -+|+. .++..+...|...|++++|.+..+..++..+. .+..|..-.+.+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 44444443321 1 12333 23345566666777777777777777776322 24566666677777
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh------hH--HHHHHHHHhcC
Q 008022 353 NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT------TY--NELLDGLLRVN 424 (581)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~~ 424 (581)
.|++.+|...++...... ..|..+-+..+..+.+.|++++|.+++......+..|-.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777664 4566666667777777777777777777776544322211 11 23345666777
Q ss_pred CHHHHHHHHHHHHH
Q 008022 425 RVKEAFELVTEIEK 438 (581)
Q Consensus 425 ~~~~a~~~~~~~~~ 438 (581)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777766654
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2.5e-07 Score=89.72 Aligned_cols=129 Identities=11% Similarity=0.100 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFG------LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFT 102 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 102 (581)
++.-+..+++.|-+.|-+..|++.+.++.... ...+++ .+..+.-.-.++.+.++++.|...++..|..+
T Consensus 605 tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE----wLv~yFg~lsve~s~eclkaml~~NirqNlQi 680 (1666)
T KOG0985|consen 605 THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE----WLVNYFGSLSVEDSLECLKAMLSANIRQNLQI 680 (1666)
T ss_pred ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH----HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHH
Confidence 33346667888888888888887776654310 001111 12334444567778888888888777777766
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC-----------CCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022 103 YNILLKALCKNNRVDGAYKLLVEMGNK-----------GCAPDAVSYTTIVSSICKLGQVEEARELAMRF 161 (581)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (581)
...+..-|..+=-.+...++|+..+.. ++.-|+......|.+.++.|++.+..++.+..
T Consensus 681 ~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 681 VVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 666666666655556666666665442 24557777778888888888888887775543
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2.6e-09 Score=88.52 Aligned_cols=313 Identities=11% Similarity=0.077 Sum_probs=140.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHH-HHHHHHH
Q 008022 68 YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYT-TIVSSIC 146 (581)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 146 (581)
+.+++..+.+..++..|++++..-.+.. +.+......+..+|....++..|-..++++-.. .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444455555555555555544443 224444455555555555555555555555443 22222221 1223344
Q ss_pred ccCCHHHHHHHHHHhCCCcchHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHH
Q 008022 147 KLGQVEEARELAMRFGSGVSVYNALIN----GLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGI 222 (581)
Q Consensus 147 ~~g~~~~a~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 222 (581)
+.+.+..|+.+...+..+....+..++ .....+++..+..+.+..... -+..+.+.......+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 445555555555555333333332222 122344444444444443321 1233333333344455555555555
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHh----HHHHHHHHHhcCChhhHHHHHHHHHh
Q 008022 223 LGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVA----YSTLIHGLCSNGSMDEAVSVSYQMEE 298 (581)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (581)
|+...+.+--.....|+..+. ..+.++.+.|++...++.++|++..+.. ....+++ +.....+.+. .
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh----~ 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLH----Q 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHH----H
Confidence 555544432223333333322 2344555555555555555544321110 0000000 0000000000 0
Q ss_pred CCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhh
Q 008022 299 NSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN-GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVT 377 (581)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 377 (581)
+ .-...++.-...+.+.++++.|.+.+-.|..+ ....|+.|...+.-. -..+++.....-+.-+...+ |-...+
T Consensus 238 S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ET 312 (459)
T KOG4340|consen 238 S---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPET 312 (459)
T ss_pred H---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHH
Confidence 0 00112333333455677777777777766443 223355555444322 12344555555555555553 456677
Q ss_pred HHHHHHHhhcCCChHHHHHHHHH
Q 008022 378 FNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 378 ~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
|..++-.||+..-++.|-.++.+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 88888888888777777776654
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=1.7e-09 Score=86.40 Aligned_cols=208 Identities=16% Similarity=0.020 Sum_probs=162.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022 342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL 421 (581)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (581)
+...+.-.|.+.|++..|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++..+.. +.+....|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456667888899999999998888875 6677888888888999999999999999888766 446667888888888
Q ss_pred hcCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 008022 422 RVNRVKEAFELVTEIEKCG-IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAI 500 (581)
Q Consensus 422 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 500 (581)
..|++++|...|+.....- ...-..+|..+.-+..+.|+++.|...|++.+... +..+.+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 8999999999998887642 22235677788888888999999999999998875 445666778888888899999999
Q ss_pred HHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 008022 501 QLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNV 556 (581)
Q Consensus 501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 556 (581)
.++++.....+ ++..++...++.-...|+.+.+-++=.++.. .-|....+..
T Consensus 194 ~~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHh
Confidence 99998887444 7777777777777788888888777666665 3566555443
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.33 E-value=3e-08 Score=95.87 Aligned_cols=153 Identities=10% Similarity=0.034 Sum_probs=112.6
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCcch
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLK-PTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 83 (581)
|..-.|.-.|.+.|+...+-+.. +..........|++..+++.|..+.-...+..+. .-...|....-.+.+.++...
T Consensus 502 Yrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 502 YRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 33444677888888888887655 7888889999999999999999985444332210 111233334445677889999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-cchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022 84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPD-AVSYTTIVSSICKLGQVEEARELAMRF 161 (581)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (581)
+..-|+...+.. |.|...|..+..+|.+.|++..|.++|...... .|+ ....-...-..+..|.+.+|+..+..+
T Consensus 581 aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 581 AVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999876 678889999999999999999999999888765 232 222223345567789999999887776
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.1e-06 Score=85.57 Aligned_cols=183 Identities=9% Similarity=0.072 Sum_probs=87.8
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022 375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG 454 (581)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (581)
+..|+.+..+-...|.+.+|++-|-+. .|+..|..++....+.|.+++-.+.+...++..-.|...+ .++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHH
Confidence 445555666655556655555544222 2444555666666666666666666655555443333332 44555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------------------CCCCCCC
Q 008022 455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG-------------------GGEWNPD 515 (581)
Q Consensus 455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~p~ 515 (581)
|++.++..+.++++ ..|+......++.-|...|.++.|.-++..+.. ......+
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 55555555544333 134444444444444444444444444332221 0000012
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022 516 IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI 577 (581)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 577 (581)
..+|...-.+|...+.+.-| +|-...+.--..-...++.-|-..|-++|-+.+++..
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 33444444444444433222 1211112233444556666666777777777776654
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.8e-08 Score=88.16 Aligned_cols=249 Identities=13% Similarity=0.074 Sum_probs=168.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHH-------
Q 008022 308 YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNT------- 380 (581)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 380 (581)
...+..+..+..++..+.+.+....... -+..-++....+|...|.+...........+.|. .....++.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 5567777778888888999888887764 3555566667778888888877777776665542 22222222
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHhcC
Q 008022 381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI-VTYNTILHGVCRAG 459 (581)
Q Consensus 381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 459 (581)
+..+|.+.++++.++..|++.......|+. ..+....+++........-. .|.. .-...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 334666778899999999887654433332 22333445555555444332 2222 12222366778999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHH
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 538 (581)
++..|...|.++++.. +.|...|...+-+|.+.|.+..|++-.+...+ +.|+ ...|..=+.++....++++|.+.
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie---L~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE---LDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 66888899999999999999999999999998 4564 55677677778888899999999
Q ss_pred HHHHHHcCCCCCHHhHH-HHHHHHHhccCCCChHHHHHH
Q 008022 539 LQKMLNEGICPNFATWN-VLVRSLFSNLGHLGPVYILDD 576 (581)
Q Consensus 539 ~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~ 576 (581)
|++.++. .|+..-+. .+.++...........+..++
T Consensus 449 y~eale~--dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 449 YQEALEL--DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHhc--CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999985 46654443 444444332333344444443
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.8e-07 Score=87.56 Aligned_cols=487 Identities=13% Similarity=0.085 Sum_probs=271.6
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------CCCCCHHHHHHHHHH
Q 008022 4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREF---------GLKPTVKIYNHILDA 74 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~ 74 (581)
-|..-|+.+.|.+-.+-+. +..+|..+++.|.+..+.+-|.-.+-.|... ...++ +.-..+...
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3556788888888777555 5567888888888877777665544333210 01121 233334445
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHH
Q 008022 75 LLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEA 154 (581)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 154 (581)
....|..++|+.+|.+..+ |..+=+.|-..|.+++|.++-+.-.+..+ ..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 5677889999999988874 34455667778999999988765433322 24555666666777888888
Q ss_pred HHHHHHh------------------------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 008022 155 RELAMRF------------------------GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSL 210 (581)
Q Consensus 155 ~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (581)
++.+++. ..+...|.-..+.+-..|+.+.|+.+|..... |.++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 8887775 22333444455555678888888888876554 45677788
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC--CC--CCHHhHHHHHHHHHhcC--
Q 008022 211 CDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG--FL--PNVVAYSTLIHGLCSNG-- 284 (581)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~-- 284 (581)
|-.|+.++|-++-++ .-|..+...+.+.|-..|++.+|..+|.+..... +. .....-..|...+..+|
T Consensus 949 C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred eeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 889999999988765 3366777788999999999999999997754320 00 00000011111111121
Q ss_pred ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCC--CCCChhhHHHHHHHHHccC
Q 008022 285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWN--------RMISNG--CSPNVVAYTCMVKVLCQNN 354 (581)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~--~~~~~~~~~~l~~~~~~~~ 354 (581)
+.-.|-++|++.-- .+......|.+.|.+.+|+++-- +++... ...|+...+.-...++...
T Consensus 1023 d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 22223333332211 12233445666666666655421 112222 2234555555555566666
Q ss_pred ChhHHHHHHHHHhh----------CCC----------------CCC----hhhHHHHHHHhhcCCChHHHHHHHHHHhhC
Q 008022 355 MFHQAHSLIEKMAF----------ENC----------------PPN----TVTFNTFIKGLCGCGRVDWAMKLLDQMKQY 404 (581)
Q Consensus 355 ~~~~a~~~~~~~~~----------~~~----------------~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 404 (581)
++++|..++-...+ +++ .|+ ...+..+...|.+.|.+..|-+-|.+.-..
T Consensus 1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 66666555432211 111 122 234566778888889888877666543210
Q ss_pred CCCCChhhHHHHHHHHHhcCCHH----------------------------HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 008022 405 ECLPNITTYNELLDGLLRVNRVK----------------------------EAFELVTEIEKCGIQLNIVTYNTILHGVC 456 (581)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~~~~----------------------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (581)
...++++.+.|+.+ .--++++.+... -.....+..|...|.
T Consensus 1175 ---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1175 ---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYK 1243 (1416)
T ss_pred ---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHH
Confidence 11223333333332 222222222110 001112222222221
Q ss_pred ---------------hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHhcCC
Q 008022 457 ---------------RAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC-----------KQGKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 457 ---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~ 510 (581)
..|-.++|.+++.++...+ .....++.|-.-.. -..|..+.+.-+..+.+..
T Consensus 1244 ~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep 1321 (1416)
T KOG3617|consen 1244 SCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEP 1321 (1416)
T ss_pred HHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCc
Confidence 1244555666666665443 11222322221111 1236666666666666633
Q ss_pred CCC---CCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 511 EWN---PDIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 511 ~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.++ |-...|..++..+....++..|-+.+++|..+
T Consensus 1322 ~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1322 ILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 221 12347888999999999999999999999775
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1.3e-09 Score=101.52 Aligned_cols=199 Identities=16% Similarity=0.049 Sum_probs=120.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhh-----CCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-Cccc-H
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQ-----YEC--LPNITTYNELLDGLLRVNRVKEAFELVTEIEKC-----G-IQLN-I 445 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~ 445 (581)
.+...|...+++++|..+|+++.. .|. +.-..+++.|..+|.+.|++++|...++...+- + ..|. .
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 455566666777777666666532 110 111235566666677777777776666654321 1 1122 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCC
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIE---GTKLD----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGG-----EWN 513 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~ 513 (581)
..++.+...|...+++++|..++++..+. -+.++ ..+++.++..|...|++++|.++++++.+.. +..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 23455666677777777777777766543 11122 3457777888888888888888887765421 112
Q ss_pred C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCC-CC-HHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022 514 P-DIISYTSLLWGICNSGGMQEAFIYLQKMLN----EGIC-PN-FATWNVLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 514 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
+ ....++.+...|.+.+.+++|.++|.+... .|.. |+ ..+|..|...|.+.|++++|+++.+.++
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 234567777777777777777777776532 2221 23 3567778888888888888888777665
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7.8e-08 Score=86.86 Aligned_cols=426 Identities=12% Similarity=0.053 Sum_probs=213.7
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
+.++.|+++.|..+|...+.-+++ |+..|..-..+|+..|++++|++=-...++..+ .-+..|.....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhcccHHH
Confidence 456789999999999999887765 888898899999999999999887777776554 335678888888888999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHH-----HHHHccCCHHHHHHHH
Q 008022 84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIV-----SSICKLGQVEEARELA 158 (581)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~ 158 (581)
|+.-|.+-++.. +.+...+..+..++. .+.+. +.. .-++..|..+. +.+...-.+-.-++.+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 999999888765 556666666666661 11111 110 01222222211 1111111122222222
Q ss_pred HHhCCCcchHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCCCccc---HHHHHHHHHccCChhHHHHHHHHHHHcC
Q 008022 159 MRFGSGVSVYNALINGLCKEHKIEEAFWLLCE-----MVDRGIDPNVIT---YSTIISSLCDVGNVETSLGILGQMFVRG 230 (581)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 230 (581)
++.|.+...| ....++..+...+.. ....|..+.+.. -.......-..++..+-.+.
T Consensus 156 ~~~p~~l~~~-------l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~-------- 220 (539)
T KOG0548|consen 156 QKNPTSLKLY-------LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV-------- 220 (539)
T ss_pred hcCcHhhhcc-------cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH--------
Confidence 2222211111 111111111111100 000000000000 00000000000000000000
Q ss_pred CCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHH-
Q 008022 231 CNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYS- 309 (581)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 309 (581)
..-..-...+.....+..++..+++-+....+.. .+..-++....+|...|.............+.|.. ....++
T Consensus 221 -k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~kl 296 (539)
T KOG0548|consen 221 -KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKL 296 (539)
T ss_pred -HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHH
Confidence 0011223445566666677777777777766653 24444555666677777666666555554444311 111122
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022 310 ------ALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK 383 (581)
Q Consensus 310 ------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 383 (581)
.+..++.+.++++.++..|.+.......|+. ..+....+++....+...-.+... ..-...-..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGn 366 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGN 366 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHH
Confidence 2223444556666666666665443322221 112222333433333332221111 111222244
Q ss_pred HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022 384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE 463 (581)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (581)
.+.+.|++..|++.|.+++... +.|...|....-+|.+.|.+..|++=.+..++.. ++....|..=..++....++++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777766655 4455566666666777777776666666665542 3334444444444555566666
Q ss_pred HHHHHHHHHHCC
Q 008022 464 AFQLLGKMLIEG 475 (581)
Q Consensus 464 a~~~~~~~~~~~ 475 (581)
|.+.|.+.++.+
T Consensus 445 Aleay~eale~d 456 (539)
T KOG0548|consen 445 ALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHhcC
Confidence 777766666653
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=4.5e-09 Score=93.97 Aligned_cols=227 Identities=14% Similarity=-0.012 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 008022 320 NLLGASQIWNRMISNG-CSPN--VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMK 396 (581)
Q Consensus 320 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 396 (581)
..+.++.-+.+++... ..|+ ...|..+...+...|++++|...|++..... |.++..|..+...+...|+++.|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455666666665432 1222 3456666677788888888888888887765 5667888888888888888888888
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022 397 LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT 476 (581)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 476 (581)
.|+...+.. +.+...+..+..++...|++++|.+.++...+.. |+..........+...+++++|...+.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 888887765 2245567777777888888888888888888753 332211222222345677888888887665432
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022 477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN----P-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF 551 (581)
Q Consensus 477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 551 (581)
.++... ........|+...+ +.+..+.+..... | ...+|..++..+...|++++|+..|+++++.. +|+.
T Consensus 196 ~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 222222 12233345555444 3444444321111 2 23578888888899999999999999988742 3455
Q ss_pred HhHHH
Q 008022 552 ATWNV 556 (581)
Q Consensus 552 ~~~~~ 556 (581)
.-+..
T Consensus 271 ~e~~~ 275 (296)
T PRK11189 271 VEHRY 275 (296)
T ss_pred HHHHH
Confidence 54443
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.30 E-value=2.2e-07 Score=87.21 Aligned_cols=216 Identities=13% Similarity=0.167 Sum_probs=114.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHH
Q 008022 174 GLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHE 253 (581)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (581)
.+...|+++.|+.-|-+.. .....+.+......|.+|..+++.+... +.....|..+...|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHH
Confidence 3344555555555443321 1223345555666677777777766655 2234445566666777777777
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008022 254 ASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMIS 333 (581)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (581)
|.++|.+.- .++..+.+|.+.|+++.|.++-.+.. +.......|-.-..-.-+.|++.+|+++|-.+..
T Consensus 784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~ 852 (1636)
T KOG3616|consen 784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE 852 (1636)
T ss_pred HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence 777664321 24455666777777777766654433 2223344444445555566667666666544321
Q ss_pred CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 008022 334 NGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTY 413 (581)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 413 (581)
|+ ..+..|-+.|..+..+++.++-... .-..+...+..-+...|+...|...|-+..+ |
T Consensus 853 ----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ 911 (1636)
T KOG3616|consen 853 ----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------F 911 (1636)
T ss_pred ----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------H
Confidence 32 2345566666666666666554321 1123344455555566666666665543322 2
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 008022 414 NELLDGLLRVNRVKEAFEL 432 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~ 432 (581)
...+..|...+-+++|.++
T Consensus 912 kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHH
Confidence 3334445445555554443
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=4.1e-09 Score=98.17 Aligned_cols=237 Identities=21% Similarity=0.172 Sum_probs=153.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHccCChhHHHHHHHHHhhC-----C--CC
Q 008022 307 TYSALIDGFAKAGNLLGASQIWNRMISN-----G-CSPNVV-AYTCMVKVLCQNNMFHQAHSLIEKMAFE-----N--CP 372 (581)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 372 (581)
+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++.+|..+|+++... | -+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333445555555555555555444332 1 012222 2223556677777777777777776542 1 12
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHHHHhh-----CC-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCc
Q 008022 373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ-----YE-CLPNIT-TYNELLDGLLRVNRVKEAFELVTEIEKC---GIQ 442 (581)
Q Consensus 373 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 442 (581)
.-..++..|..+|.+.|++++|...++...+ .+ ..|.+. .++.+...+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2244566777778888888887777766532 11 112222 3456666777888999998888876532 112
Q ss_pred c----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---
Q 008022 443 L----NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG----TK--L-DAITFNIIIYAYCKQGKVNNAIQLLDRIRG--- 508 (581)
Q Consensus 443 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 508 (581)
+ -..+++.+...|...|++++|.+++++++... .. + ....++.++..|.+.+.+++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 24578889999999999999999999988541 11 1 234578889999999999988888887542
Q ss_pred -CCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 509 -GGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 509 -~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
-++-.|+ ..+|..|+..|...|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1222343 3478999999999999999999988875
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=5.7e-09 Score=93.31 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL 110 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (581)
..|..+...|...|++++|...|++..+..+ .++..|+.+...+...|+++.|...|+...+.. +.+..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555555555555555555555555443 344555555555555555555555555555443 23344445555555
Q ss_pred HhcCChhHHHHHHHHHhhC
Q 008022 111 CKNNRVDGAYKLLVEMGNK 129 (581)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~ 129 (581)
...|++++|.+.++...+.
T Consensus 143 ~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.8e-08 Score=82.59 Aligned_cols=316 Identities=12% Similarity=0.081 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH-HHHH
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNI-LLKA 109 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 109 (581)
.-+..++..+.+..+++.|++++..-.+.++ .+......+..+|....++..|-.+++++... .|...-|.. -.+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3456667777788889999988887776553 35566777778888888899999999998876 344444432 3466
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCcch--HHHHHHHHHccCCHHHHHHHHHHhC--CCcchHHHHHHHHHhcCChhHHH
Q 008022 110 LCKNNRVDGAYKLLVEMGNKGCAPDAVS--YTTIVSSICKLGQVEEARELAMRFG--SGVSVYNALINGLCKEHKIEEAF 185 (581)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 185 (581)
+.+.+.+..|+++...|... ++... ...-.......+++..+..++++.| .+..+.+...-...+.|++++|.
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 67888899999988887653 11111 1111122345678888888888885 45666666677777899999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHH----HHHHHccCCHHHHHHHHHHH
Q 008022 186 WLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSL----LKGYLLGGRTHEASDLWNRM 261 (581)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~ 261 (581)
+-|....+.+--.....|+..+ +..+.|+.+.|++...+++++|+...+..-..+ +.+- ..|+. . .|
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~----~l 235 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---L----VL 235 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---H----HH
Confidence 9999988875443556776555 445778999999999999998865332211000 0000 00100 0 00
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 008022 262 IREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNV 340 (581)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 340 (581)
...+ -...+|.-...+.+.++++.|.+.+-.|..+. ...|+.|...+.-. -..+++.+..+-+.-+...++ ...
T Consensus 236 h~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ 310 (459)
T KOG4340|consen 236 HQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPP 310 (459)
T ss_pred HHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CCh
Confidence 0000 12234444555677888888888877776443 33466665554322 123445555555555555544 345
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHH
Q 008022 341 VAYTCMVKVLCQNNMFHQAHSLIEKM 366 (581)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (581)
.|+..++-.||+..-++.|-+++.+-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 67888888899998888888887653
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=1.8e-07 Score=79.51 Aligned_cols=307 Identities=14% Similarity=0.121 Sum_probs=175.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHH---HHHHHccCCHHHHHHHHHHHHhCCCCCCHHh-HHHHHHHH
Q 008022 205 TIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSL---LKGYLLGGRTHEASDLWNRMIREGFLPNVVA-YSTLIHGL 280 (581)
Q Consensus 205 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 280 (581)
-+...+...|++..|+.-|...++. |+..|.++ ...|...|+...|+.-+.+.++. +||... --.-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3555566666666666666666544 23333332 34555666666666666666655 444432 11222345
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHH
Q 008022 281 CSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH 360 (581)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 360 (581)
.+.|.++.|..-|+.+.... |+..+ ...++.+.--.++- ......+..+...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHH
Confidence 56666666666666666543 11110 00011100000000 01122233445567777777
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008022 361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCG 440 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 440 (581)
.....+.+.. +.+...+..-..+|...|++..|+.-++...+.. ..+....--+...+...|+.+.++...++.++.
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 7777776653 5666777777777777777777777766665543 334555555666667777777777777777764
Q ss_pred CcccHH-HH---HH---HH------HHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 008022 441 IQLNIV-TY---NT---IL------HGVCRAGMVVEAFQLLGKMLIEGTKLDA---ITFNIIIYAYCKQGKVNNAIQLLD 504 (581)
Q Consensus 441 ~~~~~~-~~---~~---l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~ 504 (581)
.||.. +| .. +. ......+++.++.+..+..++..+.... ..+..+-.++...|++.+|++...
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 34322 11 11 11 1223456777777777777765433122 223444556667778888888888
Q ss_pred HHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 505 RIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 505 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
++.+ +.| |+.++..-..+|.-..++++|+.-|+++.+.
T Consensus 332 evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 332 EVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8877 566 4667777777888888888888888877764
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=1.8e-07 Score=87.52 Aligned_cols=199 Identities=12% Similarity=0.016 Sum_probs=97.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-CCh--hhHHHHHHHHH
Q 008022 345 CMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-PNI--TTYNELLDGLL 421 (581)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 421 (581)
.+...+...|++++|...+++..... |.+...+..+...+...|++++|...+++....... |+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445556666666666666666553 444555555666666666666666666665543211 111 12334555666
Q ss_pred hcCCHHHHHHHHHHHHHcCC-cccHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CcCHHHHHHHHHHHHhc
Q 008022 422 RVNRVKEAFELVTEIEKCGI-QLNIVTY-N--TILHGVCRAGMVVEAFQL---LGKMLIEGT-KLDAITFNIIIYAYCKQ 493 (581)
Q Consensus 422 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~ 493 (581)
..|++++|..++++...... .+..... + .++..+...|....+.+. ......... ..........+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 66677777666666543211 1111111 1 122222233322222222 111111100 11111222455666777
Q ss_pred CCHHHHHHHHHHHhcCCCC------CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 494 GKVNNAIQLLDRIRGGGEW------NP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 494 g~~~~A~~~~~~~~~~~~~------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
|+.++|..+++.+.....- .. ..........++...|++++|.+.+...+.
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777776541111 00 122333444456677888888888777764
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=2.9e-07 Score=86.09 Aligned_cols=305 Identities=10% Similarity=0.007 Sum_probs=181.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---H
Q 008022 272 AYSTLIHGLCSNGSMDEAVSVSYQMEENSC-PPNVT-TYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTC---M 346 (581)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 346 (581)
.+..+...+...|+.+.+.+.+........ .++.. ........+...|++++|...+++..+..+. +...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHH
Confidence 355555556666667766555555443321 12221 1222233456678888888888887776322 3333331 1
Q ss_pred HHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 008022 347 VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRV 426 (581)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 426 (581)
.......+....+...+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 111122344555555554421 1223334455566678889999999999999998876 44566778888899999999
Q ss_pred HHHHHHHHHHHHcCC-cccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH-H--HHHHHHHhcCCHHHH
Q 008022 427 KEAFELVTEIEKCGI-QLNI--VTYNTILHGVCRAGMVVEAFQLLGKMLIEGT-KLDAITF-N--IIIYAYCKQGKVNNA 499 (581)
Q Consensus 427 ~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A 499 (581)
++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++..+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999999887532 1232 3455678889999999999999999865432 1222211 1 223334445543333
Q ss_pred HHH--H-HHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-------C-CHHhHHHHHHHHHhccCCC
Q 008022 500 IQL--L-DRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGIC-------P-NFATWNVLVRSLFSNLGHL 568 (581)
Q Consensus 500 ~~~--~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~-~~~~~~~l~~~~~~~g~~~ 568 (581)
.++ + .....................++...|+.++|...++.+...... . .....-....++...|+.+
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 333 2 221111000111222235777888999999999999998653211 0 1122222333567889999
Q ss_pred ChHHHHHHHhh
Q 008022 569 GPVYILDDIMA 579 (581)
Q Consensus 569 ~a~~~~~~~~~ 579 (581)
+|.+.+...+.
T Consensus 325 ~A~~~L~~al~ 335 (355)
T cd05804 325 TALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=9.6e-06 Score=86.26 Aligned_cols=416 Identities=14% Similarity=-0.031 Sum_probs=232.6
Q ss_pred hHHHHHHHHHhhCCCC--C-C----cchHHHHHHHHHcc----CCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHH
Q 008022 117 DGAYKLLVEMGNKGCA--P-D----AVSYTTIVSSICKL----GQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAF 185 (581)
Q Consensus 117 ~~a~~~~~~~~~~~~~--~-~----~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (581)
+.+.++++++...|+- + + ...+..++.-+.+. ...++...+ .......+...|++.+|.
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l----------h~raa~~~~~~g~~~~Al 361 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL----------HRAAAEAWLAQGFPSEAI 361 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH----------HHHHHHHHHHCCCHHHHH
Confidence 3456677777766641 1 1 23345555444332 223333333 233445566677777666
Q ss_pred HHHHHHHHCCCCCC-cccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008022 186 WLLCEMVDRGIDPN-VITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIRE 264 (581)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (581)
..+...... +. ..............|+++.+..++..+.......+..........+...|+++++...+......
T Consensus 362 ~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~ 438 (903)
T PRK04841 362 HHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQE 438 (903)
T ss_pred HHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 544332111 00 00111122334456777777666665422111122333334445556778888888888776543
Q ss_pred CC------CCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 265 GF------LPNV--VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV----TTYSALIDGFAKAGNLLGASQIWNRMI 332 (581)
Q Consensus 265 ~~------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (581)
-. .+.. .....+...+...|++++|...++.........+. .....+...+...|+++.|...+.+..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 439 LKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred ccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10 1111 11222334456788899998888887653111121 233455566777899999988888775
Q ss_pred hCCC---CC--ChhhHHHHHHHHHccCChhHHHHHHHHHhhC----CCCC---ChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022 333 SNGC---SP--NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE----NCPP---NTVTFNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 333 ~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
.... .+ .......+...+...|+++.|...+++.... +... ....+..+...+...|++++|...+..
T Consensus 519 ~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 519 QMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4311 11 1223445566778889999998888775442 2111 122344455566777999999888887
Q ss_pred HhhCC--CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CcccHH--HH--HHHHHHHHhcCCHHHHHHHHHH
Q 008022 401 MKQYE--CLP--NITTYNELLDGLLRVNRVKEAFELVTEIEKCG--IQLNIV--TY--NTILHGVCRAGMVVEAFQLLGK 470 (581)
Q Consensus 401 ~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~ 470 (581)
..... ..+ ....+..+...+...|++++|.+.+....... ...... .. ...+..+...|+.+.|.+.+..
T Consensus 599 al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~ 678 (903)
T PRK04841 599 GLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQ 678 (903)
T ss_pred hHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 64421 111 12334445667778899999988888775421 111110 00 1112334557888888888777
Q ss_pred HHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 471 MLIEGTKLD---AITFNIIIYAYCKQGKVNNAIQLLDRIRGG---GEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 471 ~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
......... ...+..+..++...|++++|...++++... .+..+ ...+...+..++...|+.++|...+.+++
T Consensus 679 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 679 APKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred cCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 554211111 112345677888889999999988887652 12222 23456677788889999999999999887
Q ss_pred Hc
Q 008022 544 NE 545 (581)
Q Consensus 544 ~~ 545 (581)
+.
T Consensus 759 ~l 760 (903)
T PRK04841 759 KL 760 (903)
T ss_pred HH
Confidence 64
No 99
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.1e-10 Score=72.08 Aligned_cols=49 Identities=37% Similarity=0.799 Sum_probs=28.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 008022 408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC 456 (581)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (581)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..+|+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.15 E-value=6.8e-09 Score=91.16 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=64.9
Q ss_pred HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cC
Q 008022 384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AG 459 (581)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 459 (581)
.+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. ..|. +...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCch
Confidence 344445555555444321 23334444445555555555555555555442 2222 22222222221 12
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH-HHHHH
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM-QEAFI 537 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~ 537 (581)
.+.+|..+|+++... .++++.+++.++.+....|++++|.+++.++.. ..| ++.++..++.+....|+. +.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 355555555554433 234555555555555555555555555555544 223 344444455444444444 44444
Q ss_pred HHHHHHH
Q 008022 538 YLQKMLN 544 (581)
Q Consensus 538 ~~~~~~~ 544 (581)
++.++..
T Consensus 258 ~l~qL~~ 264 (290)
T PF04733_consen 258 YLSQLKQ 264 (290)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 5555544
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=5.9e-07 Score=76.48 Aligned_cols=313 Identities=12% Similarity=0.102 Sum_probs=185.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH---HHHHccCChhHHHHHHHHHHHcCCCCCccc-HH
Q 008022 164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTII---SSLCDVGNVETSLGILGQMFVRGCNPNIHS-FT 239 (581)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 239 (581)
++.-...+...+...|++..|+.-|....+. |+..|..+. ..|...|+...|+.=+..+++. +||-.. -.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444566788889999999999999888775 555665554 5778889999999999998887 677332 22
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 008022 240 SLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG 319 (581)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (581)
.-...+.+.|.+++|..-|+.+++.. |+..+- ..++.+.--.++-+ .....+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCC
Confidence 33456789999999999999999874 322111 11111111111111 1111222333445
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHH
Q 008022 320 NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLD 399 (581)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 399 (581)
+...|+.....+.+..+ .|...+..-..+|...|++..|+.-++...+.. ..+...+-.+-..+...|+.+.++...+
T Consensus 170 D~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred chhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555555554422 244445555555555555555555555444332 2344444444455555555555555555
Q ss_pred HHhhCCCCCChh----hHHH---H------HHHHHhcCCHHHHHHHHHHHHHcCCcccHH---HHHHHHHHHHhcCCHHH
Q 008022 400 QMKQYECLPNIT----TYNE---L------LDGLLRVNRVKEAFELVTEIEKCGIQLNIV---TYNTILHGVCRAGMVVE 463 (581)
Q Consensus 400 ~~~~~~~~~~~~----~~~~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 463 (581)
+..+.+ ||.. .|.. + +......+++.++++..+...+........ .+..+-.++...|++.+
T Consensus 248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 555433 3321 1111 1 122334566777777777776653221222 23344455666778888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
|++...+.+... +.|..++..-+.+|.-...|+.|+.-|+++.+
T Consensus 326 AiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 326 AIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 888888887753 33577787788888888888888888888887
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.14 E-value=3.3e-06 Score=76.67 Aligned_cols=174 Identities=10% Similarity=0.019 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022 391 VDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQL-NIVTYNTILHGVCRAGMVVEAFQLLG 469 (581)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 469 (581)
.+.....++++.......-..+|..++....+..-+..|..+|.++.+.+..+ +...+++++..+| .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44444555555433222223355566666666666667777777776665444 4555555555443 356666777776
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 008022 470 KMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGI 547 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 547 (581)
--++.- ..++.--...+.-+...++-..+..+|+++... .+.| ....|..++.--..-|+...++++-+++... +
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f 502 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-F 502 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-c
Confidence 666542 233444455556666666666777777776663 3444 2456666666666667777776666666442 2
Q ss_pred C----CCHHhHHHHHHHHHhccCCC
Q 008022 548 C----PNFATWNVLVRSLFSNLGHL 568 (581)
Q Consensus 548 ~----~~~~~~~~l~~~~~~~g~~~ 568 (581)
+ +....-..+++.|--.+...
T Consensus 503 ~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 503 PADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred chhhcCCCChHHHHHHHHhhccccc
Confidence 2 22233444444444444443
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=7.3e-09 Score=90.98 Aligned_cols=256 Identities=16% Similarity=0.166 Sum_probs=170.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCH
Q 008022 242 LKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNL 321 (581)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (581)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.+.. +|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 455667899999987666 333322223445566778899999877544 4444433 55555555555444433455
Q ss_pred HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022 322 LGASQIWNRMISNGCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 322 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
+.+..-++........+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555444333222 2333333345677789999999888653 4567777888999999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022 401 MKQYECLPNITTYNELLDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT 476 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 476 (581)
|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. .++++.+.+.+..+....|++++|.+++.+.+..+
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 98754 33 444445554433 34699999999998765 57889999999999999999999999999998765
Q ss_pred CcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhcCCCCCCCH
Q 008022 477 KLDAITFNIIIYAYCKQGKV-NNAIQLLDRIRGGGEWNPDI 516 (581)
Q Consensus 477 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~p~~ 516 (581)
+.++.++..++.+....|+. +.+.+.+.++.. ..|+.
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~---~~p~h 269 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ---SNPNH 269 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH---HTTTS
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH---hCCCC
Confidence 45778888888888888888 678889898887 34653
No 104
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.2e-10 Score=71.92 Aligned_cols=49 Identities=37% Similarity=0.830 Sum_probs=31.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 008022 98 PNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSIC 146 (581)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (581)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=1e-05 Score=86.02 Aligned_cols=368 Identities=14% Similarity=-0.019 Sum_probs=221.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhCCCcchH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 008022 141 IVSSICKLGQVEEARELAMRFGSGVSVY---NALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVE 217 (581)
Q Consensus 141 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (581)
....+...|++.+|.......+...... ..........|+++.+..++..+.......++.........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444556677776666555553332222 2223345567777777777665522111123333334455566788999
Q ss_pred HHHHHHHHHHHcCCC------CC--cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCC
Q 008022 218 TSLGILGQMFVRGCN------PN--IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV----VAYSTLIHGLCSNGS 285 (581)
Q Consensus 218 ~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 285 (581)
++..++......-.. +. ......+...+...|++++|...++.........+. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 998888876543111 11 111122334556789999999999887763211121 234555666778899
Q ss_pred hhhHHHHHHHHHhCCC---CC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcc
Q 008022 286 MDEAVSVSYQMEENSC---PP--NVTTYSALIDGFAKAGNLLGASQIWNRMISN----GCS--P-NVVAYTCMVKVLCQN 353 (581)
Q Consensus 286 ~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~ 353 (581)
+++|...+.+...... .+ .......+...+...|+++.|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999988888764211 11 1234455667788899999999988876542 211 1 122344455667778
Q ss_pred CChhHHHHHHHHHhhCC--CCC--ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCC-ChhhH-----HHHHHHHHhc
Q 008022 354 NMFHQAHSLIEKMAFEN--CPP--NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLP-NITTY-----NELLDGLLRV 423 (581)
Q Consensus 354 ~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~ 423 (581)
|++++|...+.+..... ..+ ....+..+...+...|+++.|...+.......... ....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 99999998888765421 111 23334445667778899999999888874421011 11111 1122344557
Q ss_pred CCHHHHHHHHHHHHHcCCcccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCC
Q 008022 424 NRVKEAFELVTEIEKCGIQLNI---VTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKL-DAITFNIIIYAYCKQGK 495 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 495 (581)
|+.+.|..++............ ..+..+..++...|++++|...+++.... +... ...+...++.++...|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 8889988887765542111111 11345666778889999999999888754 2222 22356677788899999
Q ss_pred HHHHHHHHHHHhc
Q 008022 496 VNNAIQLLDRIRG 508 (581)
Q Consensus 496 ~~~A~~~~~~~~~ 508 (581)
.++|...+.++.+
T Consensus 747 ~~~A~~~L~~Al~ 759 (903)
T PRK04841 747 KSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=5.1e-09 Score=95.14 Aligned_cols=219 Identities=17% Similarity=0.146 Sum_probs=120.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHH
Q 008022 315 FAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWA 394 (581)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 394 (581)
+.+.|++.+|.-.|+..+...+. +...|..|.......++-..|+..+++..+.. |.+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34566666666666666665332 45566666666666666666666666666554 45555666666666666666666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHH-----------HHhcCCHHHHHHHHHHHH-HcCCcccHHHHHHHHHHHHhcCCHH
Q 008022 395 MKLLDQMKQYECLPNITTYNELLDG-----------LLRVNRVKEAFELVTEIE-KCGIQLNIVTYNTILHGVCRAGMVV 462 (581)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (581)
.+.++.-....++ |..+... +.....+....++|-++. ..+..+|+.....|.-.|.-.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 6666665543311 1111100 001111223333333333 2222355555556665666666666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHH
Q 008022 463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQK 541 (581)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (581)
+|..+|+.++... +.|..+||.|+..++...+.++|+..|.++.+ +.|. +.+.-.|+.+|...|.+++|.+.|-.
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 6666666666543 33555666666666666666666666666666 5564 33455566666666666666666655
Q ss_pred HHH
Q 008022 542 MLN 544 (581)
Q Consensus 542 ~~~ 544 (581)
++.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 543
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=2.6e-08 Score=90.65 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=158.9
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
.+.+.|++..|.-.|+..++.++. +.++|..|......+++-..|+..+++..+..+ .+..+...+...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 467889999999999999988765 889999999999999999999999999998765 677788888888888898889
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHH---------HHHHhcCChhHHHHHHHHHhh-CCCCCCcchHHHHHHHHHccCCHHH
Q 008022 84 INPIYSNMKRDGMEPNVFTYNILL---------KALCKNNRVDGAYKLLVEMGN-KGCAPDAVSYTTIVSSICKLGQVEE 153 (581)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (581)
|++++.......+ +-. |.... ..+.....+....++|-++.. .+..+|+.+...|.-.|.-.|++++
T Consensus 372 Al~~L~~Wi~~~p-~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 372 ALKMLDKWIRNKP-KYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHhCc-cch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999988876531 110 00000 111122223344555555443 3434677777888888888888888
Q ss_pred HHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCChhHHHHHHHHHHH
Q 008022 154 ARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPN-VITYSTIISSLCDVGNVETSLGILGQMFV 228 (581)
Q Consensus 154 a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 228 (581)
|...|+.. |.|...||.|...+....+.++|+..|.+.++. .|+ ++....|.-.|...|.+++|.+.|-..+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88888877 777888888888888888888888888888776 333 44445566667788888888777766543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.02 E-value=6.9e-08 Score=90.44 Aligned_cols=219 Identities=16% Similarity=0.096 Sum_probs=159.4
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 008022 338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELL 417 (581)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 417 (581)
|-...-..+...+...|-...|..++++.. .|..++.+|...|+..+|..+..+..+. +|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344556677777888888888887653 4667778888888888888888777663 57777887777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 008022 418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVN 497 (581)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 497 (581)
.......-+++|.++.+..... .-..+.....+.++++++.+.++...+.+ +....+|..++.+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 7777766777777777665432 11112222334678888888888887764 556778888888888888888
Q ss_pred HHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022 498 NAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDD 576 (581)
Q Consensus 498 ~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (581)
.|.+.|..... +.| +...|+++..+|.+.|+-.+|...++++.+.. ..+..+|.........-|.+++|++.+.+
T Consensus 537 ~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 537 AAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 88888888887 567 56688888888888888888888888888775 44555666666677778888888888887
Q ss_pred Hhh
Q 008022 577 IMA 579 (581)
Q Consensus 577 ~~~ 579 (581)
+++
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 765
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.97 E-value=2.7e-05 Score=70.99 Aligned_cols=210 Identities=11% Similarity=0.012 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 008022 321 LLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ---NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKL 397 (581)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 397 (581)
.+++..++++.+..-...+..+|..+...--. .+..+.....++++.......-..+|...+..-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 45666667666554222233344433322111 123566666777766543334456778888888888889999999
Q ss_pred HHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022 398 LDQMKQYECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT 476 (581)
Q Consensus 398 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 476 (581)
|.+..+.+..+ .+...++++..++ .++.+-|.++|+--.+. ...++.--...++.+...|+-..+..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998877666 6667777887766 47789999999987665 344455556677888889999999999999998855
Q ss_pred Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCCHHhHHHHHHHHHccCCH
Q 008022 477 KL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE--WNPDIISYTSLLWGICNSGGM 532 (581)
Q Consensus 477 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 532 (581)
++ ...+|..++.--+.-|+...+.++-++....+. ..|....-..++.-|.-.+.+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 54 456899999988999999999999888776443 332222223344445444443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=5.3e-07 Score=90.67 Aligned_cols=213 Identities=15% Similarity=0.070 Sum_probs=153.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 008022 16 YLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE-FGLKP---TVKIYNHILDALLAENRFSMINPIYSNM 91 (581)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 91 (581)
+-|++++... |.+...|...+......++.+.|++++++++. .++.- -..+|.++++.-..-|.-+...++|+++
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3344444443 34777888889999999999999999998885 33332 2347778888777778888888999998
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CC--Cc
Q 008022 92 KRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GS--GV 165 (581)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~--~~ 165 (581)
.+.. ..-.+|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|.+++.+. |. ..
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 8763 22346788889999999999999999999876 2246677888888888888888888887776 33 34
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 008022 166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNP 233 (581)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (581)
......+..-.+.|+.+.+..+|+...... +-....|+..++.-.+.|+.+.+..+|+++...++.|
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 445555566667777777777777776652 2255667777777777777777777777777665544
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=1.2e-06 Score=88.38 Aligned_cols=243 Identities=12% Similarity=0.022 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC-CCC---CChhhHHHHHHHhhcCCChHHHHHHH
Q 008022 323 GASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE-NCP---PNTVTFNTFIKGLCGCGRVDWAMKLL 398 (581)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 398 (581)
.|.++-+.++.. +.+...|...|....+.++.++|.++.++.... ++. .-...|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344444444433 234567888888889999999999999998754 111 12356777777777778888999999
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 008022 399 DQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK- 477 (581)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 477 (581)
+++.+.. .....|..|...|.+.+.+++|.++++.|.+. .......|..++..+.+.++-+.|..++.+++..-++
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 9998854 33456788899999999999999999999876 3467889999999999999999999999999986211
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HhHH
Q 008022 478 LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF--ATWN 555 (581)
Q Consensus 478 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 555 (581)
.........+..-.+.||.+.+..+|+.....++ .....|+.+++.-.++|+.+.++.+|++++..++.|-. ..|.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP--KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP--KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc--cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 2455666777788899999999999999887442 25668999999999999999999999999998887753 3455
Q ss_pred HHHHHHHhccCCCChHHH
Q 008022 556 VLVRSLFSNLGHLGPVYI 573 (581)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~ 573 (581)
..+..-..-|+ ++++++
T Consensus 1676 kwLeyEk~~Gd-e~~vE~ 1692 (1710)
T KOG1070|consen 1676 KWLEYEKSHGD-EKNVEY 1692 (1710)
T ss_pred HHHHHHHhcCc-hhhHHH
Confidence 55543333344 333333
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.93 E-value=7e-05 Score=72.72 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=98.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 008022 42 RVGLAEQALKMFYRIREFGLKPTVKIYNHILDA--LLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGA 119 (581)
Q Consensus 42 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 119 (581)
..+++..|++-...+.+.. |+. .|..++.+ ..+.|+.++|..+++.....+ ..|..+...+-.+|.+.++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHH
Confidence 3445555555555555432 221 12222222 234555555555555554443 22445555555555555555555
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHccCCHH----HHHHHHHHhCCCcchHHHHHHHHHhcCC----------hhHHH
Q 008022 120 YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVE----EARELAMRFGSGVSVYNALINGLCKEHK----------IEEAF 185 (581)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~ 185 (581)
..+|+..... .|+......+..+|.+.+.+. .|+++++.+|.+...+=++++.....-. ..-|.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 5555555544 334444444445555544432 3344444444444443333333322111 11233
Q ss_pred HHHHHHHHCC-CCCCcccHHHHHHHHHccCChhHHHHHH-HHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008022 186 WLLCEMVDRG-IDPNVITYSTIISSLCDVGNVETSLGIL-GQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIR 263 (581)
Q Consensus 186 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (581)
..++.+.+.+ .--+..-...-...+...|.+++|..++ ....+.-..-+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3444444332 1101111112223344566677777766 2333322222233333445556666777777666666666
Q ss_pred CC
Q 008022 264 EG 265 (581)
Q Consensus 264 ~~ 265 (581)
.+
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 64
No 113
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=1.4e-06 Score=77.89 Aligned_cols=203 Identities=11% Similarity=0.047 Sum_probs=101.4
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCC-ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH--HHH
Q 008022 353 NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCG-RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRV--KEA 429 (581)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 429 (581)
.+..++|+.+..+++..+ |.+..+|.....++...| ++++++..++.+.+.+ +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 344555555555555443 333344444434444444 3455666665555543 22333444443334444432 455
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCH----HHHHHH
Q 008022 430 FELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ---GKV----NNAIQL 502 (581)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~ 502 (581)
+.+++.+.+.. +-+..+|......+...|+++++++.++++++.+ +.+..+|+....++.+. |.. ++++++
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55665655543 3455556555555666666666666666666654 33455555555444433 212 345555
Q ss_pred HHHHhcCCCCCC-CHHhHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022 503 LDRIRGGGEWNP-DIISYTSLLWGICNS----GGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS 563 (581)
Q Consensus 503 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (581)
..+++. ..| +...|+.+...+... +...+|.+.+.+..+.+ ..+...+..++..+..
T Consensus 206 ~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 555555 344 455566666555552 23345666666655421 2234445555555554
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=3.9e-07 Score=74.94 Aligned_cols=165 Identities=15% Similarity=0.057 Sum_probs=116.6
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 008022 372 PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTI 451 (581)
Q Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 451 (581)
|.+..+ ..+...+...|+-+....+........ +.+.......+....+.|++.+|...+++..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334444 556666777777777777766654322 3344455557777778888888888888877653 6777888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG 530 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 530 (581)
..+|.+.|+++.|..-|.+..+.. .-++...+.++..|.-.|+++.|..++..... ..+ |...-..+..+....|
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l---~~~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL---SPAADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh---CCCCchHHHHHHHHHHhhcC
Confidence 888888888888888888887763 33566677777777778888888888888776 223 6666677777778888
Q ss_pred CHHHHHHHHHHHH
Q 008022 531 GMQEAFIYLQKML 543 (581)
Q Consensus 531 ~~~~A~~~~~~~~ 543 (581)
++++|..+...-.
T Consensus 217 ~~~~A~~i~~~e~ 229 (257)
T COG5010 217 DFREAEDIAVQEL 229 (257)
T ss_pred ChHHHHhhccccc
Confidence 8888877765554
No 115
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=1.7e-06 Score=77.24 Aligned_cols=204 Identities=9% Similarity=0.001 Sum_probs=127.9
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc-
Q 008022 4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVG-LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRF- 81 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 81 (581)
++...++.++|+.+...+++.++. +..+|......+...| ++++++..++.+...++ .+..+|+...-.+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchh
Confidence 344567778888888888876544 5566666666666666 56888888888887655 4555666555445555543
Q ss_pred -chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHcc---CCH----HH
Q 008022 82 -SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKL---GQV----EE 153 (581)
Q Consensus 82 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 153 (581)
+.++.+++.+.+.+ +.+..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56777777777765 567778888777777888888888888888877544 556666555544443 222 33
Q ss_pred HHHHHHHh----CCCcchHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 008022 154 ARELAMRF----GSGVSVYNALINGLCKE----HKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCD 212 (581)
Q Consensus 154 a~~~~~~~----~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (581)
.++...+. |.+..+|+-+...+... ++..+|.+.+.+..+.++ .+...+..|+..|+.
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 44444333 66777777766666652 233456666655544322 244455555555553
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=4.3e-07 Score=79.06 Aligned_cols=187 Identities=12% Similarity=-0.035 Sum_probs=107.2
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh--hhH
Q 008022 339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNT---VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI--TTY 413 (581)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 413 (581)
....+..+...+...|++++|...++++.... |.++ ..+..+..++...|+++.|...++.+.+....... ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455556666777777777777777766543 2222 34555666777777777777777777654311111 123
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022 414 NELLDGLLRV--------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI 485 (581)
Q Consensus 414 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 485 (581)
..+..++... |++++|.+.++.+.+.. +.+...+..+.... . .... . ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~-~---~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMD-Y---LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHH-H---HHHH------H--------HHHHHH
Confidence 3444444433 55666666666666542 22222221111110 0 0000 0 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
++..|.+.|++++|+..++++....+-.| ....+..++.++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677888888888888888877544334 3567778888888888888888888877653
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.88 E-value=5e-07 Score=74.95 Aligned_cols=123 Identities=10% Similarity=0.079 Sum_probs=89.8
Q ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCC--HHHH
Q 008022 423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY-CKQGK--VNNA 499 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 499 (581)
.++.+++...++...+.. +.+...|..+...|...|++++|...+++..... +.+...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 556677777777776654 6677778888888888888888888888888765 44677777777753 56666 4788
Q ss_pred HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022 500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF 551 (581)
Q Consensus 500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 551 (581)
.++++++.+ ..| +..++..++..+...|++++|+..|+++++. .+|+.
T Consensus 130 ~~~l~~al~---~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 130 REMIDKALA---LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHH---hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 888888887 445 5667777888888888888888888888775 34443
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=1.3e-06 Score=71.98 Aligned_cols=161 Identities=14% Similarity=0.063 Sum_probs=113.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 008022 344 TCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV 423 (581)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (581)
..+...+...|+-+....+........ +.+.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555666777777777777766655432 4555666667777777788888888887776654 66777788888888888
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLL 503 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 503 (581)
|++++|..-|.+..+.. +-++..++.+.-.+.-.|+++.|..++......+ .-|..+-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888777777752 4456666777777777788888888877777654 336666777777777788888877776
Q ss_pred HHHhc
Q 008022 504 DRIRG 508 (581)
Q Consensus 504 ~~~~~ 508 (581)
..-..
T Consensus 226 ~~e~~ 230 (257)
T COG5010 226 VQELL 230 (257)
T ss_pred ccccc
Confidence 65443
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=1.9e-07 Score=73.17 Aligned_cols=112 Identities=8% Similarity=-0.082 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022 431 ELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (581)
.+++...+. .|+ .+..+...+...|++++|...|+.++... +.+...+..++.++...|++++|+..|+++..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 345555543 333 34456677788888888888888888765 55777888888888888888888888888887
Q ss_pred CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 511 EWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
+.| ++..+..++.++...|++++|...|+++++. .|+..
T Consensus 87 -l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 87 -LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred -cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 456 6778888888888888888888888888773 45543
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=6.6e-07 Score=84.11 Aligned_cols=233 Identities=15% Similarity=0.111 Sum_probs=171.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 008022 273 YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ 352 (581)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (581)
-..+...+...|-..+|..+++++. .|..++.+|...|+..+|..+..+-.+. +|++..|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3456667778888888888887654 4667788888888888888888877773 6788888888887777
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022 353 NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL 432 (581)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 432 (581)
..-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788888887765332 11222222334688889999888877655 34566787788888888999999999
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022 433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW 512 (581)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 512 (581)
|....... +.+...||.+..+|.+.++..+|...+.+..+.+ ..+...|...+....+.|.+++|++.+.++......
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99888753 5567789999999999999999999999999887 556777888888888999999999999888652222
Q ss_pred CCCHHhHHHHHHHH
Q 008022 513 NPDIISYTSLLWGI 526 (581)
Q Consensus 513 ~p~~~~~~~l~~~~ 526 (581)
..|......++...
T Consensus 620 ~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTV 633 (777)
T ss_pred cccchhhHHHHHHH
Confidence 22444444444433
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=6.5e-07 Score=77.94 Aligned_cols=184 Identities=10% Similarity=-0.050 Sum_probs=100.5
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH---HH
Q 008022 375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI---TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV---TY 448 (581)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 448 (581)
...+..+...+...|+++.|...|+++..... .+. ..+..+..++...|++++|...++.+.+.. +.+.. .+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 44445555555666666666666666554331 111 234445555666666666666666665542 11111 23
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH
Q 008022 449 NTILHGVCRA--------GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT 520 (581)
Q Consensus 449 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 520 (581)
..+..++... |++++|.+.++++.... +.+...+..+..... .... . .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~---------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L---------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H---------HHHHH
Confidence 3333334332 44555555555555542 111111111111000 0000 0 00112
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC-CC-CHHhHHHHHHHHHhccCCCChHHHHHHHhhc
Q 008022 521 SLLWGICNSGGMQEAFIYLQKMLNEGI-CP-NFATWNVLVRSLFSNLGHLGPVYILDDIMAN 580 (581)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 580 (581)
.++..+.+.|++++|+..++++++..- .| ....+..++.++...|++++|.+.++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778899999999999999987521 12 2467788999999999999999998887643
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=5.9e-07 Score=74.52 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--hhHH
Q 008022 43 VGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL-CKNNR--VDGA 119 (581)
Q Consensus 43 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 119 (581)
.++.+++...++...+.++ .+...|..+...+...|+++.|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3444555555555554433 445555555555555555555555555555543 33444444444432 34344 3555
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022 120 YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF 161 (581)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (581)
.+++++..+.+.. +..++..+...+...|++++|+..++++
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554222 4444555555555555555555555554
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=1e-06 Score=69.10 Aligned_cols=121 Identities=8% Similarity=-0.103 Sum_probs=95.4
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
..+++...+.+ |+. +......+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+++...
T Consensus 13 ~~~~~~al~~~--p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566666543 443 4456777888999999999999998874 567888888999999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022 475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW 524 (581)
Q Consensus 475 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 524 (581)
+ +.+...+..++.++...|++++|+..|+++.. +.| ++..+.....
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~---~~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK---MSYADASWSEIRQN 134 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHH
Confidence 5 56888899999999999999999999999988 556 4444444433
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.76 E-value=9.6e-06 Score=81.11 Aligned_cols=146 Identities=9% Similarity=-0.013 Sum_probs=71.6
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022 375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG 454 (581)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (581)
...+..++.+|-+.|+.++|..+|+++.+.. +.+....|.+...|... +.++|.+++.+....- .+..-|+.+...
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~--i~~kq~~~~~e~ 191 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF--IKKKQYVGIEEI 191 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--HhhhcchHHHHH
Confidence 3344455555555555555555555555544 33444555555555555 5555555555444320 000001000000
Q ss_pred ---H--HhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHH
Q 008022 455 ---V--CRAGMVVEAFQLLGKMLIE-GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGIC 527 (581)
Q Consensus 455 ---~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 527 (581)
+ ....+.+.-..+.+++... +..--..++..+...|....++++++.+++.+.+ ..| |..+...++.+|.
T Consensus 192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHH
Confidence 0 0111222223333333332 2222344556666777778888888888888887 445 5556677777766
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=2.8e-06 Score=83.96 Aligned_cols=148 Identities=14% Similarity=0.054 Sum_probs=124.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022 406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI 485 (581)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 485 (581)
.+.+...+..|.......|.+++|..+++.+.+.. |.+......+...+.+.+++++|...+++.+... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34568889999999999999999999999999863 4456677788889999999999999999999875 557778889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVR 559 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 559 (581)
++.++.+.|++++|..+|+++.. ..| +..++..++.++...|+.++|...|+++++. ..|-...|..++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH
Confidence 99999999999999999999997 245 4778999999999999999999999999875 3444455554443
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.3e-05 Score=66.15 Aligned_cols=251 Identities=14% Similarity=0.099 Sum_probs=160.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022 37 INSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRV 116 (581)
Q Consensus 37 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (581)
++-+.-.|++..++..-+...... .++..-..+.++|...|.+.....- +.... .|.......+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence 455566788888887766554322 4555566677888888887665432 22222 23333333333333334444
Q ss_pred hHH-HHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008022 117 DGA-YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG 195 (581)
Q Consensus 117 ~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (581)
+.- .++.+.+.......+......-...|++.|++++|++.... ..+..+...=...+.+..+.+-|.+.++.|.+..
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 433 34455555443332323333445678888999999998887 5555555555677788888999999999998762
Q ss_pred CCCCcccHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 008022 196 IDPNVITYSTIISSLCD----VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVV 271 (581)
Q Consensus 196 ~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 271 (581)
+..|.+.|..++.+ .+...+|.-+|+++.+. .+|+..+.+....++...|++++|..+++..+..... ++.
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpe 242 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPE 242 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHH
Confidence 55666666665553 45678888888888764 3778888888888888888899998888888877543 566
Q ss_pred hHHHHHHHHHhcCChhh-HHHHHHHHHhC
Q 008022 272 AYSTLIHGLCSNGSMDE-AVSVSYQMEEN 299 (581)
Q Consensus 272 ~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 299 (581)
+...++-+-...|...+ ..+.+.++...
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 66666655555555443 34455555543
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.3e-05 Score=65.62 Aligned_cols=187 Identities=13% Similarity=0.074 Sum_probs=113.1
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChH
Q 008022 318 AGNLLGASQIWNRMISN---G-CSPNVV-AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVD 392 (581)
Q Consensus 318 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 392 (581)
..+.++..+++..+... | ..++.. .|..++-+....++.+.|..+++.+...- |.+...-..-...+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34567777777776543 3 233333 33444455556677777777777766553 444443333334455567777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 393 WAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML 472 (581)
Q Consensus 393 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 472 (581)
+|+++++.+.+.+ +.|..++..-+...-..|+.-+|++-+.+..+. +..|...|..+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777776655 445555555555555666666777766666655 46677777777777777777777777777776
Q ss_pred HCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhc
Q 008022 473 IEGTKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRG 508 (581)
Q Consensus 473 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 508 (581)
-.. |.++..+..++..+.-.| +++.|.+.+.+..+
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 653 335555555665544433 45566777777766
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.72 E-value=0.00035 Score=68.10 Aligned_cols=516 Identities=13% Similarity=0.087 Sum_probs=276.2
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI 84 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (581)
....+++..|......+.++.+. ...+...-+-.+.+.|..++|...++.....+. .|..+...+-..|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 34678899999999999887433 334444445566899999999988888776554 3777888888899999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHcc-CCH---------HHH
Q 008022 85 NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKL-GQV---------EEA 154 (581)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~---------~~a 154 (581)
..+|++..+. -|+......+..+|.+.+++.+-.++--++-+. .+.++..+=.++..+... ... .-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999977 466777777888888888876554444343332 233444433344333321 111 233
Q ss_pred HHHHHHh--CC-Ccch---HHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHH
Q 008022 155 RELAMRF--GS-GVSV---YNALINGLCKEHKIEEAFWLLC-EMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMF 227 (581)
Q Consensus 155 ~~~~~~~--~~-~~~~---~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 227 (581)
...+++. .+ ...+ .......+...|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3444444 12 1111 1222344557888999999983 44443333344444556778888899999999999988
Q ss_pred HcCCCCCcccHHHHHHHH----------------HccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCChhh
Q 008022 228 VRGCNPNIHSFTSLLKGY----------------LLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHG---LCSNGSMDE 288 (581)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~ 288 (581)
..| +.| |...+..+ ...+..+...+...+......+ ++ |-+-+.+ +..-|+.++
T Consensus 254 ~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp--~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 254 EKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GP--YLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-Cc--HHHHHHHHHHhcccCChHH
Confidence 885 222 33222211 1112222333333333222111 11 2222222 234467777
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHccCC-----h
Q 008022 289 AVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV-------AYTCMVKVLCQNNM-----F 356 (581)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~ 356 (581)
+...|-+-. |.. ..+..=+..|...=..+.-..++....... ++.. .+...+....-.|. -
T Consensus 327 ~~~~y~~kf--g~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~a 399 (932)
T KOG2053|consen 327 MLSYYFKKF--GDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPA 399 (932)
T ss_pred HHHHHHHHh--CCC---cHhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCCh
Confidence 654443322 111 122222223333323333334444333221 1111 01111111111221 1
Q ss_pred hHHHHHHHHHh---hCC------CCCCh---------hhHHHHHHHhhcCCChH---HHHHHHHHHhhCCCCCChhhHHH
Q 008022 357 HQAHSLIEKMA---FEN------CPPNT---------VTFNTFIKGLCGCGRVD---WAMKLLDQMKQYECLPNITTYNE 415 (581)
Q Consensus 357 ~~a~~~~~~~~---~~~------~~~~~---------~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ 415 (581)
+....++.+.. .+| .-|+. .+.+.+++.|.+.++.. +|+-+++...... +.|..+-..
T Consensus 400 d~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLl 478 (932)
T KOG2053|consen 400 DSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLL 478 (932)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHH
Confidence 22233332221 111 11221 23356777888887766 3444444443332 344455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022 416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK 495 (581)
Q Consensus 416 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 495 (581)
++..|.-.|-+..|.++|..+.-..+..|...|.. ...+...|++..+...+....+---..-..+-..++.+| +.|.
T Consensus 479 LiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ 556 (932)
T KOG2053|consen 479 LIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGA 556 (932)
T ss_pred HHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCc
Confidence 78888888988999999888876666666555533 345566788888888887776542111222333333333 5566
Q ss_pred HHHHHHHHH---HHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 496 VNNAIQLLD---RIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 496 ~~~A~~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
+.+..++.. ++.. ....--..+-+..+..+...++.++-...+..|.
T Consensus 557 ySkI~em~~fr~rL~~-S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 557 YSKIPEMLAFRDRLMH-SLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 666555443 2222 0000112233455566667777777666666664
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=2.8e-05 Score=63.76 Aligned_cols=190 Identities=14% Similarity=0.091 Sum_probs=135.2
Q ss_pred hcCChhhHHHHHHHHHhC---C-CCCcHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 008022 282 SNGSMDEAVSVSYQMEEN---S-CPPNVTT-YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMF 356 (581)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 356 (581)
...+.++..+++.++... + ..++..+ +..++-+....|+.+.|...++++...- +.+..+-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345678888888877642 3 3344433 4556666677888888888888887763 32333333334445667888
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 357 HQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEI 436 (581)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 436 (581)
++|.++++.+...+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 89999998888776 677777777777777778777888888877664 3568888888889999999999998888888
Q ss_pred HHcCCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 008022 437 EKCGIQLNIVTYNTILHGVCRAG---MVVEAFQLLGKMLIEG 475 (581)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 475 (581)
.-.. |.++..+..+...+...| +.+.+.++|.+.++..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7652 556666666766655444 5677888888888764
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=7.5e-06 Score=67.53 Aligned_cols=248 Identities=13% Similarity=0.132 Sum_probs=165.9
Q ss_pred hHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 008022 3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS 82 (581)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (581)
+.+.-.|.+..++..-...... +..+..-..+.++|...|.+.....- +.. +-.|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhH
Confidence 3444557777776665555443 24677777889999999987655432 332 22344445555445444445544
Q ss_pred hH-HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022 83 MI-NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF 161 (581)
Q Consensus 83 ~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (581)
.- ..+.+.+.......+......-...|...|++++|++...... +......=+.++.+..+++-|.+.++++
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3445555544334444444455567889999999999988732 2233333456677888999999999998
Q ss_pred --CCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc
Q 008022 162 --GSGVSVYNALINGLCK----EHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNI 235 (581)
Q Consensus 162 --~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (581)
-.+..+.+.|.+++++ .+.+.+|.-+|++|.++ .+|++.+.+....++...|++++|..+++....... .++
T Consensus 164 q~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dp 241 (299)
T KOG3081|consen 164 QQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDP 241 (299)
T ss_pred HccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCH
Confidence 4556677767777664 55689999999999886 678888899999999999999999999999998753 345
Q ss_pred ccHHHHHHHHHccCCH-HHHHHHHHHHHhC
Q 008022 236 HSFTSLLKGYLLGGRT-HEASDLWNRMIRE 264 (581)
Q Consensus 236 ~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 264 (581)
.+...++-.....|.. +-..+.+.++...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 5555555554455544 4455666666665
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=1.3e-06 Score=68.46 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=75.1
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 008022 432 LVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE 511 (581)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 511 (581)
.++.+.... +.+......+...+...|++++|.+.++.+...+ +.+...+..++.++...|++++|...++++..
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--- 79 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--- 79 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 344444432 2233445556666777777777777777776654 44666777777777777777777777777766
Q ss_pred CCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022 512 WNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT 553 (581)
Q Consensus 512 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 553 (581)
..| +...+..++.++...|++++|...|++.++. .|+...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 234 4566667777777777777777777777763 455444
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=3.2e-05 Score=69.84 Aligned_cols=151 Identities=22% Similarity=0.272 Sum_probs=102.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHhc
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN-IVTYNTILHGVCRA 458 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 458 (581)
.....+...|+++.|+..++.+.... +.|...+......+.+.++.++|.+.++.+... .|+ ....-.+..++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 33344556677888888888876654 345555566667777888888888888888775 344 55556667778888
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 008022 459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 538 (581)
|++.+|+.+++...... +.|+..|..|..+|...|+..++... ....|...|+++.|...
T Consensus 388 g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-------------------~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 388 GKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-------------------RAEGYALAGRLEQAIIF 447 (484)
T ss_pred CChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-------------------HHHHHHhCCCHHHHHHH
Confidence 88888888888877764 56777788888888887776665443 33345567778888888
Q ss_pred HHHHHHcCCCCCHHhH
Q 008022 539 LQKMLNEGICPNFATW 554 (581)
Q Consensus 539 ~~~~~~~~~~~~~~~~ 554 (581)
+..+.+. .+++..++
T Consensus 448 l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 448 LMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHh-ccCCcHHH
Confidence 7777665 34444443
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=2.3e-05 Score=77.67 Aligned_cols=182 Identities=10% Similarity=0.008 Sum_probs=141.9
Q ss_pred CCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 008022 371 CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNT 450 (581)
Q Consensus 371 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (581)
.+.+...+..|.......|.+++|..+++...+.. +.+......+...+.+.+++++|...++...... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 46678999999999999999999999999999875 3344567778889999999999999999999874 556777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccC
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSG 530 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 530 (581)
+..++.+.|++++|..+|+++...+ +.+..++..++.++...|+.++|...|+++.+.. .|-...|+.++ +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~------~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHH------H
Confidence 8889999999999999999999853 4568899999999999999999999999998833 35555555543 3
Q ss_pred CHHHHHHHHHHHHHc----CCCCCHHhHHHHHHHHHh
Q 008022 531 GMQEAFIYLQKMLNE----GICPNFATWNVLVRSLFS 563 (581)
Q Consensus 531 ~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 563 (581)
+...-..+++++.-. |.+.......+.+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 344555666766332 222233455666655544
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=3.5e-05 Score=77.30 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=139.5
Q ss_pred cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC---
Q 008022 24 EGVS-CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPN--- 99 (581)
Q Consensus 24 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 99 (581)
.+.. .+..++..|+..+...+++++|.++.+......+ .....|-.....+.+.+++..+..+ .+...- ..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~ 99 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKW 99 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccch
Confidence 3444 3667899999999999999999999997776543 3333444444466677776665554 332221 112
Q ss_pred ----------------hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCC
Q 008022 100 ----------------VFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGS 163 (581)
Q Consensus 100 ----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 163 (581)
...+..+..+|-+.|+.++|..+|+++.+.. +-|+.+.+.+...|... +.++|++++.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K--- 174 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK--- 174 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH---
Confidence 2445556666667777777777777777775 33666777777777777 77777776544
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCcccHHHHH
Q 008022 164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVR-GCNPNIHSFTSLL 242 (581)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 242 (581)
.+..+...+++..+.+++.++....+. +...+. .+.+.+... |...-..++..+-
T Consensus 175 -------AV~~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 175 -------AIYRFIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred -------HHHHHHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHH
Confidence 344466666777777777777765211 222222 222222221 1122233444555
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 008022 243 KGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLC 281 (581)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (581)
..|-..++++++..+++.+++.... |.....-++.+|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 6677788899999999998887533 6666677777765
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=3.2e-06 Score=66.17 Aligned_cols=116 Identities=13% Similarity=0.032 Sum_probs=88.2
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022 397 LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT 476 (581)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 476 (581)
.++...... +.+......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++.....+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 445555543 2234455667777888899999999998888764 5577788888888888899999999998888765
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHh
Q 008022 477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIIS 518 (581)
Q Consensus 477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 518 (581)
+.+...+..++.+|...|++++|.+.++++.+ +.|+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE---ICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hccccch
Confidence 55677888888899999999999999998888 4464443
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=2e-07 Score=51.31 Aligned_cols=32 Identities=50% Similarity=0.937 Sum_probs=20.4
Q ss_pred CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 440 GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM 471 (581)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 471 (581)
|++||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=1.3e-05 Score=63.27 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHHHcCCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHH
Q 008022 423 VNRVKEAFELVTEIEKCGIQLN---IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVN 497 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 497 (581)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+ ......++.++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 556666666666666542 222 12223344555666666666666666666542222 123344556666666666
Q ss_pred HHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 498 NAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 498 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
+|+..++.... -...+..+...+.+|...|++++|...|+++
T Consensus 103 ~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666655332 1123445556666666666666666666654
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=4.4e-05 Score=69.05 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=56.0
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-cchHHHHHHHHHccCCHHH
Q 008022 75 LLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPD-AVSYTTIVSSICKLGQVEE 153 (581)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 153 (581)
....|+++.|+..++.+...- |.|+..+......+...++.++|.+.++.+... .|+ ......+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 344555555555555555442 233333344445555555555555555555554 222 3334444555555555555
Q ss_pred HHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHH
Q 008022 154 ARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWL 187 (581)
Q Consensus 154 a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (581)
|+..++.. |.++..|..|.++|...|+..++...
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 55555554 45555555555555555555555443
No 139
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=3e-07 Score=50.60 Aligned_cols=32 Identities=53% Similarity=0.941 Sum_probs=19.8
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 008022 95 GMEPNVFTYNILLKALCKNNRVDGAYKLLVEM 126 (581)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (581)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 140
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.41 E-value=0.00012 Score=56.92 Aligned_cols=133 Identities=13% Similarity=0.070 Sum_probs=76.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHH
Q 008022 407 LPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-LDAITFNI 485 (581)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 485 (581)
.|+...-..|..++...|+..+|...|++...--...|......+.++....+++..|...++++.+.+.. -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555666666666666666666666655434455666666666666666666666666666654210 02223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
+.+.|...|.+.+|...|+.+.. .-|+...-......+.++|+.++|..-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 55666666666666666666666 3355544444445555666555555444443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=1.6e-05 Score=72.60 Aligned_cols=126 Identities=21% Similarity=0.172 Sum_probs=75.7
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 008022 377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC 456 (581)
Q Consensus 377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (581)
....++..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++++..+.. +.+...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455555666666777777777666543 332 3345555556666666666666666542 334555555555566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 457 RAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 457 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.++++.|.++.+++.... +.+..+|..|+.+|...|+++.|+-.+..+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 6666666777666666652 33455666666677777777776666665554
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=1.7e-05 Score=62.55 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC--HHhHH
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD---AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD--IISYT 520 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~ 520 (581)
..|..++..+ ..++...+...++.+.... +.+ ......++..+...|++++|...|+.+.... -.|+ .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence 3444555444 4889999999999999874 223 3345567788999999999999999999833 2222 23556
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022 521 SLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
.+...+...|++++|+..++..... ...+..+...+..+.+.|+.++|++.+++.+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6788999999999999999775432 3345567788889999999999999998764
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.30 E-value=2.3e-05 Score=60.22 Aligned_cols=94 Identities=10% Similarity=-0.115 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHH
Q 008022 448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGI 526 (581)
Q Consensus 448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 526 (581)
.-.+...+...|++++|.++|+-+.... +-+..-|..|+-++-..|++++|+..|..+.. +.| |+..+..++.++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Confidence 3344555667788888888887777654 44666677777788888888888888888777 445 666777788888
Q ss_pred HccCCHHHHHHHHHHHHHc
Q 008022 527 CNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 527 ~~~g~~~~A~~~~~~~~~~ 545 (581)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877653
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.6e-05 Score=67.14 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=56.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 498 (581)
-+.+.+++++|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3445566666666666666642 4455555555666666666666666666666543 2234456666666666666666
Q ss_pred HHHHHHHHhcCCCCCCCHHhH
Q 008022 499 AIQLLDRIRGGGEWNPDIISY 519 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p~~~~~ 519 (581)
|++.|++..+ +.|+..+|
T Consensus 168 A~~aykKaLe---ldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALE---LDPDNESY 185 (304)
T ss_pred HHHHHHhhhc---cCCCcHHH
Confidence 6666666666 55644443
No 145
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=0.0035 Score=59.64 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=119.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 008022 62 KPTVKIYNHILDALLAENRFSMINPIYSNMKRD-GMEP--------NVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCA 132 (581)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 132 (581)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+ ..-+--|++++|.++|-++.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhh--
Confidence 388889998888777777777777766555432 2211 0111111 22223588999999988887662
Q ss_pred CCcchHHHHHHHHHccCCHHHHHHHHHHhCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 008022 133 PDAVSYTTIVSSICKLGQVEEARELAMRFGSG------VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTI 206 (581)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (581)
..+..+.+.|++-...++++.-..+ ..+|+.+...+.....|++|.+.|..-... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 2366777888888888877765221 345777777777777777777777543221 234
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 008022 207 ISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSM 286 (581)
Q Consensus 207 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (581)
+.++.+..++++-+.+...+ +.+....-.+..++...|.-++|.+.+-+.-. | ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence 55666655555554444333 33455556666777777777777665533211 1 1234556666677
Q ss_pred hhHHHHHHH
Q 008022 287 DEAVSVSYQ 295 (581)
Q Consensus 287 ~~a~~~~~~ 295 (581)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 777665443
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=5.5e-05 Score=69.15 Aligned_cols=126 Identities=15% Similarity=0.128 Sum_probs=98.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022 342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL 421 (581)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (581)
....++..+...++++.|..+++++.... | .....++..+...++..+|.+++++..+.. +.+...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456666777888999999999988764 3 345557778888888889999998887654 346666666777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI 473 (581)
Q Consensus 422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 473 (581)
+.++++.|+.+.+++.+.. |.+..+|..|..+|...|+++.|+..++.+-.
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8999999999999998862 55566899999999999999999988877654
No 147
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=0.0031 Score=60.01 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=78.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCCcccHHHHHHHHHccCCHHHHHH
Q 008022 178 EHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRG-CNPNIHSFTSLLKGYLLGGRTHEASD 256 (581)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (581)
-|++++|.++|-++-+++ ..+..+.+.|++-...++++.--... ...-..+++.+...+.....|+.|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777766655441 24555666666666665554311000 00013445556666666666666666
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008022 257 LWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGC 336 (581)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 336 (581)
.|...... ...+.++.+..++++-..+... .|.+....-.+..++.+.|.-++|.+.|-+...
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--- 880 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--- 880 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC---
Confidence 66543221 1234455555555544433322 233445555666666666666666655543211
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHH
Q 008022 337 SPNVVAYTCMVKVLCQNNMFHQAHSLIEK 365 (581)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 365 (581)
| ...+..|...++|.+|.++-+.
T Consensus 881 -p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 -P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred -c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1233445555566666655544
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=7.5e-05 Score=56.87 Aligned_cols=99 Identities=20% Similarity=0.142 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTK--LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
++..++..+.+.|++++|.+.+..+...... .....+..++.++.+.|+++.|.+.++.+....+-.| ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566677778888888888887765311 1134566677888888888888888888776332222 245677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 008022 524 WGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.++...|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7788888888888888888774
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.21 E-value=0.00013 Score=56.08 Aligned_cols=104 Identities=13% Similarity=-0.043 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022 410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA 489 (581)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 489 (581)
....-.+...+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|+..|..+.... +.|+..+..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344455666778999999999999988764 4566777788888889999999999999999886 4688889999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022 490 YCKQGKVNNAIQLLDRIRGGGEWNPD 515 (581)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~~~~p~ 515 (581)
+...|+.+.|.+.|+.+....+-.|.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999998885544443
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=5.6e-05 Score=69.56 Aligned_cols=89 Identities=16% Similarity=0.004 Sum_probs=50.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 008022 418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVN 497 (581)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 497 (581)
..+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34445566666666666665543 3345555555555666666666666666665543 334555555566666666666
Q ss_pred HHHHHHHHHhc
Q 008022 498 NAIQLLDRIRG 508 (581)
Q Consensus 498 ~A~~~~~~~~~ 508 (581)
+|+..|+++..
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00025 Score=62.76 Aligned_cols=258 Identities=14% Similarity=0.032 Sum_probs=110.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 008022 245 YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGA 324 (581)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (581)
+.+..++..|+..+....+..+. +...|..-+..+...++++++.--.+.-.+.. +.........-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 44455566666666666655432 23334444445555555555544433332221 11122223333333333444444
Q ss_pred HHHHH---------------HHHhCCC-CCChhhHHHH-HHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 008022 325 SQIWN---------------RMISNGC-SPNVVAYTCM-VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG 387 (581)
Q Consensus 325 ~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (581)
.+.++ ....... +|.-..+..+ ..++.-.+++++|.+.--...+.. +.+......-..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 43333 1111110 1111222222 233445556666665555554432 2222222222233344
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHH-------------HHHHHHHhcCCHHHHHHHHHHHHHc---CCcccHHHHHHH
Q 008022 388 CGRVDWAMKLLDQMKQYECLPNITTYN-------------ELLDGLLRVNRVKEAFELVTEIEKC---GIQLNIVTYNTI 451 (581)
Q Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l 451 (581)
.++.+.+...|++.+..+ |+...-. .-..-..+.|++..|.+.|.+.+.. ...++...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 456666666666665544 3322111 1111223445555555555555532 122333344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
..+..+.|+.++|+.--+..+..+ +.=...+..-+.++...++|++|.+-++++.+
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555554421 11112233333444455555555555555554
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=7.4e-06 Score=57.43 Aligned_cols=80 Identities=24% Similarity=0.255 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHH
Q 008022 458 AGMVVEAFQLLGKMLIEGTK-LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEA 535 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 535 (581)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|++++++ .+ ..| +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666654321 1333444456666666666666666655 22 122 223333445566666666666
Q ss_pred HHHHHH
Q 008022 536 FIYLQK 541 (581)
Q Consensus 536 ~~~~~~ 541 (581)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.10 E-value=7.8e-05 Score=54.18 Aligned_cols=91 Identities=22% Similarity=0.213 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHc
Q 008022 450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICN 528 (581)
Q Consensus 450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 528 (581)
.+...+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++..... .| +..++..++..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHHHHH
Confidence 34445555666666666666665542 223345555566666666666666666665552 23 33455555566666
Q ss_pred cCCHHHHHHHHHHHHH
Q 008022 529 SGGMQEAFIYLQKMLN 544 (581)
Q Consensus 529 ~g~~~~A~~~~~~~~~ 544 (581)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666666554
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.09 E-value=6.2e-05 Score=57.34 Aligned_cols=98 Identities=13% Similarity=-0.022 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHhHH
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN----FATWN 555 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~ 555 (581)
.++..++..+.+.|++++|.+.+..+.+..+-.| ....+..++.++...|++++|...++++... .|+ ...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHH
Confidence 4567788899999999999999999987432222 2456777999999999999999999999874 233 45677
Q ss_pred HHHHHHHhccCCCChHHHHHHHhhc
Q 008022 556 VLVRSLFSNLGHLGPVYILDDIMAN 580 (581)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~~~~~ 580 (581)
.+..++...|+.++|.+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 8888999999999999999988763
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.09 E-value=0.00046 Score=56.39 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
.+..+...+...|++++|...+++.++....+. ...+..++.++.+.|++++|+..++++.. ..| +...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 445555566666777777777766665432221 34566666677777777777777777666 334 344555556
Q ss_pred HHHHccCC--------------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccC
Q 008022 524 WGICNSGG--------------MQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLG 566 (581)
Q Consensus 524 ~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 566 (581)
.++...|+ +++|.++++++... .|+. +..++.-+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 66655554 45666666666652 3443 4444444444443
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=0.00011 Score=53.44 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK 492 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (581)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455666777888888888888877653 3344666777777888888888888888887764 3455677788888888
Q ss_pred cCCHHHHHHHHHHHhc
Q 008022 493 QGKVNNAIQLLDRIRG 508 (581)
Q Consensus 493 ~g~~~~A~~~~~~~~~ 508 (581)
.|++++|...+..+.+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888888776
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.07 E-value=0.00015 Score=58.97 Aligned_cols=95 Identities=14% Similarity=0.026 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022 445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTS 521 (581)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 521 (581)
...+..+...+...|++++|...+++.+.....+ ...++..++.+|...|++++|+..++++.. +.| ...++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 4455666677777888888888888887653222 234778888888888888888888888887 344 3455666
Q ss_pred HHHHHH-------ccCCHHHHHHHHHHH
Q 008022 522 LLWGIC-------NSGGMQEAFIYLQKM 542 (581)
Q Consensus 522 l~~~~~-------~~g~~~~A~~~~~~~ 542 (581)
++..+. ..|+++.|+..+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 777877665555544
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=7.4e-05 Score=63.24 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=68.0
Q ss_pred HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022 384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE 463 (581)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (581)
-..+.+++.+|+..|...++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3556677888888888877765 3456666677777888888888877777776643 3345677777778888888888
Q ss_pred HHHHHHHHHHCCCCcCHHHHH
Q 008022 464 AFQLLGKMLIEGTKLDAITFN 484 (581)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~ 484 (581)
|++.|++.++. .|+-.+|.
T Consensus 168 A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHH
Confidence 88888877763 55555443
No 159
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.05 E-value=0.0089 Score=54.11 Aligned_cols=127 Identities=18% Similarity=0.192 Sum_probs=85.2
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCcccHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCc----CHHHHHHHH
Q 008022 420 LLRVNR-VKEAFELVTEIEKCGIQLNIVTYNTIL----HGVCR---AGMVVEAFQLLGKMLIEGTKL----DAITFNIII 487 (581)
Q Consensus 420 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 487 (581)
+-+.|. -++|+++++.+.+.. +-|..+-+.+. ..|.+ ...+.+-..+-+-+.+.|++| +...-|.+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 444555 788899998888752 33443333322 22322 234455555555556667766 333445554
Q ss_pred H--HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 008022 488 Y--AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWN 555 (581)
Q Consensus 488 ~--~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 555 (581)
+ -+...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++..+ +|+..+++
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 3 35678999999988888887 7899999999999999999999999999876 45555544
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=1e-05 Score=56.71 Aligned_cols=81 Identities=9% Similarity=0.124 Sum_probs=53.3
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 008022 8 KCEIDGVQYLLQQMKVEGVS-CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINP 86 (581)
Q Consensus 8 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 86 (581)
+|+++.|..+++++.+..+. ++...+..++.+|.+.|++++|..+++. ...++ .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57788888888888876542 2445566678888888888888888877 32222 233444455677778888888887
Q ss_pred HHHH
Q 008022 87 IYSN 90 (581)
Q Consensus 87 ~~~~ 90 (581)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=0.00054 Score=66.03 Aligned_cols=142 Identities=13% Similarity=0.020 Sum_probs=85.1
Q ss_pred CCChhhHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Q 008022 407 LPNITTYNELLDGLLR--V---NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA--------GMVVEAFQLLGKMLI 473 (581)
Q Consensus 407 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 473 (581)
+.+...|...+++... . ++...|..+|++..+.. |.....+..+..++... .+...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4455566666555332 2 23556777777777652 22233444333333221 123344444444333
Q ss_pred C-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 474 E-GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 474 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
. ..+.++.++..++......|++++|...++++.. +.|+...|..++..+...|+.++|.+.++++.. +.|...
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 2 1233556677676666667888888888888887 557777788888888888888888888888876 456655
Q ss_pred hH
Q 008022 553 TW 554 (581)
Q Consensus 553 ~~ 554 (581)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 54
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00021 Score=65.87 Aligned_cols=86 Identities=15% Similarity=-0.004 Sum_probs=43.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHH
Q 008022 455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQ 533 (581)
Q Consensus 455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 533 (581)
+...|++++|++.|++++... +.+...+..++.+|...|++++|+..++++.. +.| +...|..++.+|...|+++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHH
Confidence 344455555555555555443 23444455555555555555555555555554 233 3444455555555555555
Q ss_pred HHHHHHHHHHH
Q 008022 534 EAFIYLQKMLN 544 (581)
Q Consensus 534 ~A~~~~~~~~~ 544 (581)
+|+..|+++++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=0.0002 Score=63.45 Aligned_cols=131 Identities=11% Similarity=0.007 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG-VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
+|..++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+..++. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666666432 2233334333333 22245555567777666665 344556666666666
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
...|+.+.|..+|+++....+... ....|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666777777777776666321111 123566666666666777666666666665
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.01 E-value=0.0025 Score=49.94 Aligned_cols=134 Identities=10% Similarity=-0.065 Sum_probs=77.5
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHH
Q 008022 442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS 521 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 521 (581)
.|+...-..|..+....|+..+|...|++...--...|...+..+.++....+++..|...++++.+..+-..++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555566666666666666666666665434445666666666666666666666666666652211113334455
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022 522 LLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI 577 (581)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 577 (581)
+.+.|...|++.+|...|+.+++. .|++.........+.++|+.++|...+.++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 666666666666666666666653 444444333444456666666655544443
No 165
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00055 Score=58.54 Aligned_cols=128 Identities=10% Similarity=0.037 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---cchHHHH
Q 008022 11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR---FSMINPI 87 (581)
Q Consensus 11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 87 (581)
.+....-++.-+..++. |.+.|..|...|...|+++.|...|.+..+..+ ++++.+..+..++....+ ..++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34444555555556554 999999999999999999999999999998665 788888888877665433 5578999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022 88 YSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS 143 (581)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (581)
|+++.+.+ +.|+.....+...+...|++.+|...|+.|.+.. + ....+..++.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p-~~~~rr~~ie 268 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-P-ADDPRRSLIE 268 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-C-CCCchHHHHH
Confidence 99999886 6777888888889999999999999999999873 3 3333444443
No 166
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.96 E-value=1.9e-05 Score=44.35 Aligned_cols=33 Identities=55% Similarity=1.037 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 008022 167 VYNALINGLCKEHKIEEAFWLLCEMVDRGIDPN 199 (581)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (581)
+||.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 167
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.96 E-value=0.00083 Score=49.97 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=62.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHH
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGIC 527 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 527 (581)
+..++-..|+.++|+.+|++.+..|+... ...+..+...+...|++++|..++++....++-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566677888888888888887765543 33566677788888888888888888776332211 1222233445667
Q ss_pred ccCCHHHHHHHHHHHHH
Q 008022 528 NSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 528 ~~g~~~~A~~~~~~~~~ 544 (581)
..|+.++|++.+-..+.
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 78888888887766653
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.95 E-value=0.0034 Score=54.17 Aligned_cols=67 Identities=7% Similarity=-0.005 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVK--IYNHILDALLAENRFSMINPIYSNMKRDG 95 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (581)
++..+...+..+...|++++|.+.|+.+....+.+... ..-.+..++.+.++++.|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44455556666677777777777777777644322111 12344566677777777777777777663
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.93 E-value=5.5e-05 Score=49.91 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
++..+.+.|++++|++.|+++.+ ..| +...+..++.++...|++++|..+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK---QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC---CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566777777777777777777 335 556677777777777777777777777765
No 170
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=2.3e-05 Score=44.01 Aligned_cols=33 Identities=36% Similarity=0.824 Sum_probs=29.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN 550 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 550 (581)
+|+.++.+|.+.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688889999999999999999999988888887
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.92 E-value=0.00016 Score=51.29 Aligned_cols=80 Identities=25% Similarity=0.416 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------cchHHHHHHHHHhCCCCCChhhH
Q 008022 33 FISVINSYRRVGLAEQALKMFYRIREFGL-KPTVKIYNHILDALLAENR--------FSMINPIYSNMKRDGMEPNVFTY 103 (581)
Q Consensus 33 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~ 103 (581)
....+..+...+++.....+|+.+.+.|+ .|++.+|+.++.+.++..- .-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777888888888888888888 7888888888887766432 33567788888888888888888
Q ss_pred HHHHHHHHh
Q 008022 104 NILLKALCK 112 (581)
Q Consensus 104 ~~l~~~~~~ 112 (581)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877653
No 172
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00025 Score=65.23 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=63.3
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022 302 PPNVTTYSALIDGFAKAGNLLGASQIWNRMISN--GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN 379 (581)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (581)
+.+......++..+....+.+.+..++-+.... ....-..+...+++.|...|..+.++.++..-...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444445555555555555555555555555443 111112233455566666666666666666655556556666666
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL 421 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (581)
.+++.+.+.|++..|.++...|...+...+..++...+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666555554444444444444444433
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.92 E-value=0.00053 Score=59.50 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
.|...+..+.+.|++++|...|+.+++..+... +..+..++.+|...|++++|+..|+++...++-.| ....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556788888888888777532211 35667778888888888888888888876554444 355666677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 524 WGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
.++...|+.++|..+|+++++. .|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 7777888888888888888763 45543
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.00091 Score=59.66 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHH----cCCccc--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHH
Q 008022 425 RVKEAFELVTEIEK----CGIQLN--IVTYNTILHGVCRA-GMVVEAFQLLGKMLIE----GTKL--DAITFNIIIYAYC 491 (581)
Q Consensus 425 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~ 491 (581)
++++|.+.+++... .| .++ ..++..+...|... |++++|.+.|+++.+. + .+ -..++..++..+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 56666666655432 22 222 23455556666666 7888888888887754 2 11 1335667778888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCC----CHH-hHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC--HHhHHHHHHHHH
Q 008022 492 KQGKVNNAIQLLDRIRGGGEWNP----DII-SYTSLLWGICNSGGMQEAFIYLQKMLNE--GICPN--FATWNVLVRSLF 562 (581)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~~~~p----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~ 562 (581)
+.|++++|+++|+++....--.| +.. .+...+-++...|++..|...+++.... ++..+ ......++.++-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 88888888888888765221111 121 2334455667778888888888888653 22222 234555665555
Q ss_pred hccCCCChH
Q 008022 563 SNLGHLGPV 571 (581)
Q Consensus 563 ~~g~~~~a~ 571 (581)
. |+.+.-.
T Consensus 247 ~-~D~e~f~ 254 (282)
T PF14938_consen 247 E-GDVEAFT 254 (282)
T ss_dssp T-T-CCCHH
T ss_pred h-CCHHHHH
Confidence 4 5555433
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.90 E-value=4.9e-05 Score=50.92 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 008022 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG-GMQEAFIYLQKMLN 544 (581)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 544 (581)
++.+|..++..+...|++++|+..|+++.+ +.| ++..|..++.++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~---~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE---LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH---HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345566666666666666666666666666 344 4556666666666666 56666666666655
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.89 E-value=0.016 Score=51.50 Aligned_cols=245 Identities=12% Similarity=0.019 Sum_probs=106.0
Q ss_pred cCChhhHHHHHHHHHhCCCCCcHHhHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 008022 283 NGSMDEAVSVSYQMEENSCPPNVTTYSA----LIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQ 358 (581)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 358 (581)
.|+++.|.+-|+.|... +.+-.. +.-.-.+.|+.+.|.++-++....-+. -.......+...+..|+|+.
T Consensus 133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 46666666666666542 222111 111223455555555555554443211 22344555555666666666
Q ss_pred HHHHHHHHhhCC-CCCChhh--HHHHHHHhh---cCCChHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCCHHHHHH
Q 008022 359 AHSLIEKMAFEN-CPPNTVT--FNTFIKGLC---GCGRVDWAMKLLDQMKQYECLPNITT-YNELLDGLLRVNRVKEAFE 431 (581)
Q Consensus 359 a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~ 431 (581)
|+++++.-.... +.++..- -..|+.+-. -..+...|...-.+..+. .|+... -.....++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 666665543321 1122111 111222111 012333444433333332 233322 1222345555666666666
Q ss_pred HHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022 432 LVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-GT-KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG 509 (581)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (581)
+++.+-+. .|.+..+... ...+.|+.. ..-+++..+. .+ +.+......+..+....|++..|..--+.+..
T Consensus 285 ilE~aWK~--ePHP~ia~lY--~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 285 ILETAWKA--EPHPDIALLY--VRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred HHHHHHhc--CCChHHHHHH--HHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 66666554 3333332221 123334322 1112221111 01 22344445555555556666666555555554
Q ss_pred CCCCCCHHhHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 008022 510 GEWNPDIISYTSLLWGICNS-GGMQEAFIYLQKMLN 544 (581)
Q Consensus 510 ~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 544 (581)
..|....|..|...-... |+-.++...+-+.++
T Consensus 358 --~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 358 --EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred --hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 445555555555544332 555566655555554
No 177
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2.4e-05 Score=43.52 Aligned_cols=33 Identities=42% Similarity=0.624 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 008022 101 FTYNILLKALCKNNRVDGAYKLLVEMGNKGCAP 133 (581)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 133 (581)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 178
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=3.1e-05 Score=43.04 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=20.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 008022 166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGIDP 198 (581)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (581)
.+|+.++.++.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.00077 Score=55.06 Aligned_cols=88 Identities=11% Similarity=-0.011 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPT--VKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (581)
....+..++..+...|++++|...|+++....+.+. ...+..+...+.+.|+++.|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445678888899999999999999999986544332 4678888899999999999999999998864 4456667777
Q ss_pred HHHHHhcCChh
Q 008022 107 LKALCKNNRVD 117 (581)
Q Consensus 107 ~~~~~~~~~~~ 117 (581)
...+...|+..
T Consensus 113 g~~~~~~g~~~ 123 (172)
T PRK02603 113 AVIYHKRGEKA 123 (172)
T ss_pred HHHHHHcCChH
Confidence 77777777643
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.88 E-value=0.0051 Score=53.08 Aligned_cols=59 Identities=7% Similarity=-0.102 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
.++..|.+.|.+..|+.-++.+.+.++-.| .......++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 456677788888888888888877665555 45567777788888888888877766553
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0018 Score=55.52 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=69.6
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCC-CHH
Q 008022 442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRGGGEWNP-DII 517 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p-~~~ 517 (581)
+.|...|..|...|...|+...|..-|.+..+.. ++++..+..++.++..+. ...++.++++++.. .+| |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHH
Confidence 5567777777777777777777777777777763 456666666666554432 35567777777776 445 566
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
+...|...+...|++.+|...|+.|++.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6667777777777777777777777765
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.86 E-value=0.00052 Score=55.85 Aligned_cols=116 Identities=11% Similarity=-0.011 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCcchHHH
Q 008022 10 EIDGVQYLLQQMKVE-GVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKP--TVKIYNHILDALLAENRFSMINP 86 (581)
Q Consensus 10 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 86 (581)
.+..+...+..+.+. +.......+..++..+...|++++|...|+.+......+ ...++..+...+...|++++|..
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666666666433 222345677888888899999999999999998654332 23578888899999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHH-------hcCChhHHHHHHHHH
Q 008022 87 IYSNMKRDGMEPNVFTYNILLKALC-------KNNRVDGAYKLLVEM 126 (581)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~ 126 (581)
.++...... +.....+..+...+. ..|+++.|...+++.
T Consensus 94 ~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 94 YYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 999988764 444555666666666 667777555555443
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.84 E-value=0.00054 Score=63.11 Aligned_cols=124 Identities=17% Similarity=0.153 Sum_probs=101.6
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhh
Q 008022 335 GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN--CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITT 412 (581)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 412 (581)
+.+.+......++..+....+.+.+..++-+..... ...-+.+..++++.|...|..+.++.+++.=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344567777888888888888899999988887652 223355667999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA 458 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (581)
++.++..+.+.|++..|.++...|...+...++.++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988777677777777666666665
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=7.9e-05 Score=49.73 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=43.6
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 60 (581)
+.++|++++|..+|+.+....+. +..++..++.+|.+.|++++|.++++++....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35678888888888888887654 88888888888888888888888888888754
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.77 E-value=0.00013 Score=48.89 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhc
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG-KVNNAIQLLDRIRG 508 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 508 (581)
+...|..+...+...|++++|+..|++.++.. +.+...+..++.+|...| ++++|++.++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566777777777888888888888887764 446667777778888887 68888888877766
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0056 Score=51.01 Aligned_cols=138 Identities=9% Similarity=0.039 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHHHHHHHH
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG-----TKLDAITFNIIIY 488 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 488 (581)
+.++..+.-.|.+.-....+.+.++...+.++.....++..-.+.||.+.|..+|++..+.. ...+.........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34455555566666666677766666555566666666666667777777777776555432 1222222333334
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 008022 489 AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWN 555 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 555 (581)
.+.-++++..|...+.++....+ .++...|.-.-++.-.|+..+|++.++.|+.. .|.+.+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 44555666677777766665221 14444455555555566777777777777653 44444433
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.021 Score=51.20 Aligned_cols=256 Identities=12% Similarity=-0.003 Sum_probs=115.8
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHH
Q 008022 73 DALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVE 152 (581)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (581)
..+.+..++..|+..+..+.+.. +.+...|..-...+...|++++|.--.+.-++.... .+......-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 34445555666666666666654 334445555555555566666655544443332100 1122223333333333333
Q ss_pred HHHHHHHH---------------h-C-----CCcchHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 008022 153 EARELAMR---------------F-G-----SGVSVYNAL-INGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSL 210 (581)
Q Consensus 153 ~a~~~~~~---------------~-~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (581)
+|.+.++. + + |.-..|-.+ ..++.-.+++++|.+.--...+.... +......-..++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence 33333221 1 1 111111111 23455566666666655555444211 111111112233
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccHHH-------------HHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHhHH
Q 008022 211 CDVGNVETSLGILGQMFVRGCNPNIHSFTS-------------LLKGYLLGGRTHEASDLWNRMIREG---FLPNVVAYS 274 (581)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 274 (581)
.-.++.+.+...|++.+.. .|+...... -..-..+.|++..|.+.|.+.+..+ ..|+...|.
T Consensus 214 yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 3455666666666666554 222211111 1122345566666666666665542 233444455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008022 275 TLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN 334 (581)
Q Consensus 275 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (581)
....+..+.|+..+|+.-.+...+.. +.-...+..-..++...++|++|.+-+++..+.
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555566666666666555555431 001112222233444555666666666665544
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.73 E-value=0.0033 Score=60.76 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=91.7
Q ss_pred CCChhhHHHHHHHhhcC-----CChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 008022 372 PPNTVTFNTFIKGLCGC-----GRVDWAMKLLDQMKQYECLPNI-TTYNELLDGLLRV--------NRVKEAFELVTEIE 437 (581)
Q Consensus 372 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 437 (581)
+.+...|...+++.... ++...|..+|++..+.. |+. ..+..+..++... .+...+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45566666665553322 23557777777777654 432 3343333333221 12233444444433
Q ss_pred Hc-CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 008022 438 KC-GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDI 516 (581)
Q Consensus 438 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 516 (581)
.. ..+.++..|..+.......|++++|...+++++..+ |+...|..++..+...|++++|.+.++++.. +.|..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~---L~P~~ 486 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN---LRPGE 486 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCC
Confidence 32 134456777777666777899999999999999975 5788999999999999999999999999998 55654
Q ss_pred HhH
Q 008022 517 ISY 519 (581)
Q Consensus 517 ~~~ 519 (581)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.71 E-value=0.00016 Score=47.62 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+...+...|++++|.+.|+++++.. +-+...+..++.++...|++++|+..|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677888888888888888765 44677777788888888888888888888776
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.00099 Score=59.09 Aligned_cols=129 Identities=9% Similarity=0.073 Sum_probs=56.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-hhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 008022 342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKG-LCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420 (581)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (581)
+|..+++...+.+..+.|..+|.+....+ ..+..+|...+.. +...++.+.|.++|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554322 2233333333333 12234444455555555432 233444444555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 421 LRVNRVKEAFELVTEIEKCGIQLNI---VTYNTILHGVCRAGMVVEAFQLLGKMLI 473 (581)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 473 (581)
...++.+.|..+|+..... ++++. ..|...+..=.+.|+.+.+.++.+++..
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 22221 2444444444455555555555555544
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0027 Score=56.65 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=9.8
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 008022 244 GYLLGGRTHEASDLWNRMIRE 264 (581)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~ 264 (581)
++...||...|...+++....
T Consensus 205 ~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 205 CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 334445555555555554433
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.69 E-value=0.0048 Score=45.96 Aligned_cols=92 Identities=20% Similarity=0.121 Sum_probs=47.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHh
Q 008022 417 LDGLLRVNRVKEAFELVTEIEKCGIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK--LDAITFNIIIYAYCK 492 (581)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 492 (581)
..++-..|+.++|+.+|+.....|.... ...+-.+...+...|++++|..++++....... .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666666666666666554332 223444555566666666666666666554211 012222223345555
Q ss_pred cCCHHHHHHHHHHHhc
Q 008022 493 QGKVNNAIQLLDRIRG 508 (581)
Q Consensus 493 ~g~~~~A~~~~~~~~~ 508 (581)
.|+.++|++.+-....
T Consensus 88 ~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA 103 (120)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666554443
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.69 E-value=0.00022 Score=47.58 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 458 AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.|++++|+++++++.... +.+...+..++.+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444432 22344444444444444444444444444443
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.61 E-value=0.00044 Score=46.87 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022 488 YAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT 553 (581)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 553 (581)
..|.+.+++++|+++++++.. +.| ++..|...+.++...|++++|.+.+++.++. .|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 456666677777777777666 344 4555666666667777777777777777653 454443
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0014 Score=46.69 Aligned_cols=76 Identities=25% Similarity=0.304 Sum_probs=66.2
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGV-SCSEGVFISVINSYRRVG--------LAEQALKMFYRIREFGLKPTVKIYNHIL 72 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 72 (581)
|..+...|++...-.+|+.+.+.|+ -|+.++|..++.+..++. ...+.+.+++.|+..+.+|+.++|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4566778999999999999999999 789999999999987754 3446788999999999999999999999
Q ss_pred HHHHh
Q 008022 73 DALLA 77 (581)
Q Consensus 73 ~~~~~ 77 (581)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 88765
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.58 E-value=0.0011 Score=58.78 Aligned_cols=132 Identities=14% Similarity=0.053 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCcCHH
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIE----KCGIQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----G-TKLDAI 481 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 481 (581)
.|..|...|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+..... | -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34455555555677777776555322 22211 12345666777777778888888877765532 1 122344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh----cCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 482 TFNIIIYAYCKQGKVNNAIQLLDRIR----GGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
....|.+.|.-..++++|+.++.+-. +.....-...++..|+.++...|..++|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55667777777778888887776532 211112234567777888888888888887766554
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.01 Score=46.25 Aligned_cols=89 Identities=9% Similarity=-0.176 Sum_probs=61.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCH
Q 008022 453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGM 532 (581)
Q Consensus 453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 532 (581)
..+...|++++|..+|.-+...+ .-+..-+..|+.++-..+++++|+..|..+..... .|+..+-..+.++...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCH
Confidence 34456788888888887777654 34566677777777777888888888877765221 2444455677777888888
Q ss_pred HHHHHHHHHHHH
Q 008022 533 QEAFIYLQKMLN 544 (581)
Q Consensus 533 ~~A~~~~~~~~~ 544 (581)
+.|...|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887776
No 198
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.11 Score=51.34 Aligned_cols=179 Identities=18% Similarity=0.174 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022 32 VFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALC 111 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (581)
....-+..+.+...++.|+.+-..-.. +...-..+.......+.+.|++++|...|-+....- .| ..++.-|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhc
Confidence 344456667777788888766543221 110112234444456678899999998887766431 22 24566667
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcch--HHHHHHHHHhcCChhHHHHHHH
Q 008022 112 KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSV--YNALINGLCKEHKIEEAFWLLC 189 (581)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 189 (581)
...+...--..++.+.+.|+. +....+.|+.+|.+.++.++..++.+..+..... ....+..+.+.+-.++|.-+-.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 777777778888888888876 5666678899999999999988888877643333 4566677777777777776655
Q ss_pred HHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHH
Q 008022 190 EMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQM 226 (581)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 226 (581)
.... ...... -.+-..+++++|++.+..+
T Consensus 488 k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 4332 222222 3344568888888888765
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.49 E-value=0.0065 Score=48.07 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCCCHHhHH
Q 008022 482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML-----NEGICPNFATWN 555 (581)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~ 555 (581)
+...++..+...|++++|.++++++.. ..| +...|..++.+|...|+..+|+++|+++. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 456677788889999999999999998 567 77899999999999999999999998873 358889887643
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.49 E-value=0.067 Score=47.72 Aligned_cols=282 Identities=15% Similarity=0.106 Sum_probs=141.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCcccHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChh
Q 008022 212 DVGNVETSLGILGQMFVRGCNPNIHSFTSLLKG--YLLGGRTHEASDLWNRMIREGFLPNVVA--YSTLIHGLCSNGSMD 287 (581)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 287 (581)
..|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |.... +..|.-...+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 355666666665544322 12343334444332 33467777777777777652 22211 222222234556666
Q ss_pred hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhh--HHHHHHHHH--c-cCChhHHHH
Q 008022 288 EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNG-CSPNVVA--YTCMVKVLC--Q-NNMFHQAHS 361 (581)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~--~-~~~~~~a~~ 361 (581)
.|..+-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+-. . ..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6666665554432 3344566667777777777777777776554432 2233221 122222211 1 124445555
Q ss_pred HHHHHhhCCCCCChh-hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008022 362 LIEKMAFENCPPNTV-TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC- 439 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 439 (581)
.-.+..+. .|+.. .--.-..++.+.|+..++-.+++.+-+.. |....+ .+..+.+.|+ .+..-++...+.
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCC--cHHHHHHHHHHHH
Confidence 54444433 23322 22233456667777777777777776554 332222 1222334443 233333322211
Q ss_pred CC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhc
Q 008022 440 GI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK-QGKVNNAIQLLDRIRG 508 (581)
Q Consensus 440 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 508 (581)
.. +.+..+...+..+-...|++..|..--+.... ..|....|..+.+.-.. .||-.++..++.+...
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 01 23444555556666667777777666655554 35566666666655433 4777777777777766
No 201
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.48 E-value=0.0002 Score=38.60 Aligned_cols=29 Identities=34% Similarity=0.684 Sum_probs=22.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKMLNEG 546 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (581)
+|+.++.+|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.022 Score=47.89 Aligned_cols=51 Identities=24% Similarity=0.132 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHH
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEA 535 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 535 (581)
.++..|.+.|.+..|..-++.+.+.++-.| ...+...++.+|.+.|..+.|
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 356667777777777777777776543333 233556666777777766533
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.47 E-value=0.027 Score=53.45 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChh
Q 008022 103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIE 182 (581)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (581)
+..-+..+...|.+++|.++-- +-....-|..|.......-+++-|++.+.+. +.-.+-
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rV---------------Rdl~~L 617 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRV---------------RDLRYL 617 (1081)
T ss_pred ccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHH---------------hccHHH
Confidence 3333444556666666654311 1122334555554444444445444432221 222344
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022 183 EAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQ 225 (581)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 225 (581)
+.+.-+++++++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 55566778888887777643 44566778888888888764
No 204
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00022 Score=38.51 Aligned_cols=29 Identities=48% Similarity=0.802 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008022 167 VYNALINGLCKEHKIEEAFWLLCEMVDRG 195 (581)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (581)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666654
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.42 E-value=0.083 Score=48.07 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=22.4
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 515 DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
+.-.+.+++.++.-.|++++|.+.+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3334567777777788888888888888764
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.41 E-value=0.00091 Score=45.31 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=46.7
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGL 61 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 61 (581)
-..+.++++++.|...++.++..++. ++..+...+..+...|++++|.+.|+.+.+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677888888888888888887654 777888888888888888888888888887554
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.0033 Score=53.23 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGT--KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
.|+.-+. +.+.|++..|..-|...++..+ .-....+..|+.++...|++++|...|..+.+.++-.| -+.++..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555443 4567788888888888887632 22345677788888888888888888888887676666 457888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 008022 524 WGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.+..+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888888775
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.41 E-value=0.0077 Score=50.64 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAENRFSMINPIYSNMKRD 94 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (581)
+...+...+..+...|++.+|.+.|+.+....+. -.....-.++.++.+.|+++.|...+++..+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555666666777777777777777653221 22334455556666666777766666666654
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.0059 Score=53.15 Aligned_cols=98 Identities=10% Similarity=-0.036 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHH
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN---IVTYNTILHGVCRAGMVVEAFQLLGKMLIEG--TKLDAITFNII 486 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 486 (581)
.|......+.+.|++++|+..|+.+.+.. |-+ +..+..+...|...|++++|...|+.+.+.. .+.....+..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 45554444456788888888888888763 222 3466677888888899999999998888652 12235566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCC
Q 008022 487 IYAYCKQGKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~ 510 (581)
+.++...|++++|..+++++.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 788888899999999999888733
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.36 E-value=0.11 Score=47.33 Aligned_cols=83 Identities=8% Similarity=0.175 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022 27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106 (581)
Q Consensus 27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (581)
|.+...|..++.-+-.+|.+++.+++++++.. .++--+.+|..-+.+-...+++.....+|.+.+.. ..+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k--~l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK--SLNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--hccHhHHHHH
Confidence 45889999999999999999999999999986 22234567888888888889999999999999876 3456667666
Q ss_pred HHHHHh
Q 008022 107 LKALCK 112 (581)
Q Consensus 107 ~~~~~~ 112 (581)
+.--.+
T Consensus 116 l~YIRr 121 (660)
T COG5107 116 LEYIRR 121 (660)
T ss_pred HHHHHh
Confidence 654433
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.34 E-value=0.12 Score=47.14 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=99.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHH
Q 008022 410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCG-IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAIT-FNIII 487 (581)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 487 (581)
...|...+....+....+.|..+|-++.+.+ +.++...+++++..+ ..|++..|..+|+--+.. -||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456666777777777888888888888877 556677777777654 457788888888877765 234333 34556
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022 488 YAYCKQGKVNNAIQLLDRIRGGGEWNPD--IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF 562 (581)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (581)
..+...++-+.|..+|++..++. ..+ ...|..++.--..-|+...+..+=+++.+ ..|...+.......+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~--~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL--EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 66777888888888888665421 222 45677777777778888888888777766 3566555544444443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.31 E-value=0.00093 Score=45.97 Aligned_cols=64 Identities=22% Similarity=0.263 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CC-CCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGG---GE-WNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.+++.++..|...|++++|++.++++.+. .| -.|+ ..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666665431 11 1121 33556666666666777777666666543
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.30 E-value=0.13 Score=46.96 Aligned_cols=226 Identities=12% Similarity=0.154 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCC----CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----
Q 008022 274 STLIHGLCSNGSMDEAVSVSYQMEENSCP----PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYT----- 344 (581)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 344 (581)
..+...+.. +.+++..+.+.+....+. .-..++..++....+.++...|.+.+.-+... +|+...-.
T Consensus 265 ~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls 340 (549)
T PF07079_consen 265 EPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLS 340 (549)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcC
Confidence 334444433 455555554444332111 12456777888888888888888888877664 33332111
Q ss_pred --HHHHHHHcc-C---ChhHHHHHHHHHhhCCCCCCh-hhHHHH---HHHhhcCCC-hHHHHHHHHHHhhCCCCCChhhH
Q 008022 345 --CMVKVLCQN-N---MFHQAHSLIEKMAFENCPPNT-VTFNTF---IKGLCGCGR-VDWAMKLLDQMKQYECLPNITTY 413 (581)
Q Consensus 345 --~l~~~~~~~-~---~~~~a~~~~~~~~~~~~~~~~-~~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 413 (581)
.+....+.. . +...=+.+++.....++ |. .....+ +.-+-+.|. -++|+++++.+.+.. .-|...-
T Consensus 341 ~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~ 417 (549)
T PF07079_consen 341 PKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECE 417 (549)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHH
Confidence 122222211 1 12223334444443321 21 111112 222334444 788999999887753 2344333
Q ss_pred HHHH----HHHHh---cCCHHHHHHHHHHHHHcCCcccHH----HHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022 414 NELL----DGLLR---VNRVKEAFELVTEIEKCGIQLNIV----TYNTILHG--VCRAGMVVEAFQLLGKMLIEGTKLDA 480 (581)
Q Consensus 414 ~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~ 480 (581)
|.+. ..|.+ ...+.+-+.+-.-+.+.|++|-.. .-|.+.++ +...|++.++.-.-..+.+ +.|++
T Consensus 418 n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~ 495 (549)
T PF07079_consen 418 NIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSP 495 (549)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcH
Confidence 3322 22322 233444444445556677776433 34444433 4578999999877766666 68899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.+|..++-++....++++|..++..+..
T Consensus 496 ~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 496 QAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 9999999999999999999999987653
No 214
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.027 Score=48.33 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=72.8
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI 84 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (581)
+...|++.+|..+|.......+. +..+...++.+|...|+.+.|..++..+...-..........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44556666666666666665443 45566666666666666666666666554322111111222234445555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCcchHHHHHHHHHccC
Q 008022 85 NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKG-CAPDAVSYTTIVSSICKLG 149 (581)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 149 (581)
..+-+.+... +.|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+...|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5555554433 3355555555566666666666655555444331 1113344445555544444
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=97.24 E-value=0.012 Score=45.93 Aligned_cols=90 Identities=12% Similarity=-0.096 Sum_probs=70.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 008022 417 LDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV 496 (581)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 496 (581)
..-+...|++++|..+|+-+...+ +-+..-+..|..++-..+++++|...|......+ ..|+......+.+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 344557889999999998877654 4466667778888888889999999988877664 34555567788889999999
Q ss_pred HHHHHHHHHHhc
Q 008022 497 NNAIQLLDRIRG 508 (581)
Q Consensus 497 ~~A~~~~~~~~~ 508 (581)
+.|...|..+..
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988887
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.21 E-value=0.11 Score=49.69 Aligned_cols=79 Identities=19% Similarity=0.050 Sum_probs=44.7
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 008022 199 NVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIH 278 (581)
Q Consensus 199 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (581)
+..+...+...+.+...+..|-++|.++-.. .+++......++|++|..+-++..+. .|+. |....+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHH
Confidence 3344555555555666677777777766432 35566677788888888777665543 2332 223333
Q ss_pred HHHhcCChhhHH
Q 008022 279 GLCSNGSMDEAV 290 (581)
Q Consensus 279 ~~~~~~~~~~a~ 290 (581)
-++...++++|.
T Consensus 813 wLAE~DrFeEAq 824 (1081)
T KOG1538|consen 813 WLAENDRFEEAQ 824 (1081)
T ss_pred HhhhhhhHHHHH
Confidence 444444444443
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0052 Score=54.70 Aligned_cols=134 Identities=10% Similarity=0.032 Sum_probs=82.5
Q ss_pred cccHHHHHHHHHccCChhHHHHHHHHHH----HcCCC-CCcccHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCC
Q 008022 200 VITYSTIISSLCDVGNVETSLGILGQMF----VRGCN-PNIHSFTSLLKGYLLGGRTHEASDLWNRMIRE----GF-LPN 269 (581)
Q Consensus 200 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 269 (581)
...|..|.+.|.-.|+++.|....+.-. +.|.. ....++..+..++.-.|+++.|.+.|+..... |- ...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 3556677777777888888877655432 22211 12345566777777888888888887764332 21 123
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008022 270 VVAYSTLIHGLCSNGSMDEAVSVSYQMEEN----S-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMIS 333 (581)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (581)
......|...|.-..++++|+.++.+-... + ..-....+-.+..+|...|..+.|..+.+.-.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344556777777777788887776653321 1 112345566777777778888887776665443
No 218
>PRK11906 transcriptional regulator; Provisional
Probab=97.17 E-value=0.043 Score=50.70 Aligned_cols=78 Identities=13% Similarity=0.030 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 429 AFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
|.++-+...+.+ +.|+.....+..+..-.++++.|...|++....+ +....+|...+..+.-.|+.++|.+.+++..+
T Consensus 323 a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 323 ALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333444444433 3344444444444444444445555555444432 22333344444444444555555555554444
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.12 Score=43.45 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=91.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHH-----H
Q 008022 378 FNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTI-----L 452 (581)
Q Consensus 378 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~ 452 (581)
.+.++......+.+.-....+++..+...+.++.....+++.-.+.|+.+.|...|++..+..-..+....+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34555566666777777777777777665566667777777777788888887777766543223333333332 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH
Q 008022 453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT 520 (581)
Q Consensus 453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 520 (581)
..+.-++++..|...+.+....+ +.++...|.-+-+..-.|+..+|++.++.+.+ ..|.+.+-+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhh
Confidence 33455678888888888887664 34555566666666667888899999888887 456554444
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0071 Score=54.12 Aligned_cols=126 Identities=11% Similarity=-0.030 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCcc---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022 415 ELLDGLLRVNRVKEAFELVTEIEKC-----GIQL---------NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480 (581)
Q Consensus 415 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 480 (581)
.-...|.+.|++..|...|+.+... +.++ -..+++.+..++.+.+++..|++..++.+..+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3466778888888888888876532 1111 12356666677777788888888888877775 5677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-hHHHHHHHHHccCCHH-HHHHHHHHHHH
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII-SYTSLLWGICNSGGMQ-EAFIYLQKMLN 544 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~-~A~~~~~~~~~ 544 (581)
..+..-+.+|...|+++.|+..|+++.+ +.|+.. +-+.++..--+..... ...++|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777788888888888888888877 566433 3333433333333332 33556666644
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.13 E-value=0.26 Score=46.99 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=105.9
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022 304 NVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK 383 (581)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 383 (581)
+..+|...+.--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..++....+-..+..+.+.-.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4556777777777788888888888776531 011122344445555555777777777766655443333333222233
Q ss_pred HhhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCcccHHHHHHHHHH-----
Q 008022 384 GLCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLRVNRVKEAF---ELVTEIEKCGIQLNIVTYNTILHG----- 454 (581)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~----- 454 (581)
..-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++..... | .-+......+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHH
Confidence 3445678889999988887653 4433 2222344455677777776 33333322 1 1222222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008022 455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG 494 (581)
Q Consensus 455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 494 (581)
+.-.++.+.|..++.++... .+++...|..++......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23357888888888888876 3667777777776665544
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.013 Score=52.58 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=84.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhC-----CCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH
Q 008022 381 FIKGLCGCGRVDWAMKLLDQMKQY-----ECL---------PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV 446 (581)
Q Consensus 381 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 446 (581)
-...+.+.|++..|..-|++.... ... .-...+..+.-++.+.+++.+|+..-...+..+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 346777888888888888775431 111 112345667777888888888888888888775 66777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhc
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVN-NAIQLLDRIRG 508 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~ 508 (581)
.+-.-..++...|+++.|+..|+++++.. +.|..+-+.++.+-.+...+. +..++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777788888888888888888888753 334444555555444444333 34677777766
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.11 E-value=0.014 Score=44.32 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=50.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHH
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEGT--KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGIC 527 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 527 (581)
.....+.|++++|.+.|+.+...-+ +-....-..++.+|.+.|++++|+..++++++.++-.|++ -|.....++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHH
Confidence 3445677888888888888877621 2244566778888888888888888888888855555543 2333444433
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.32 Score=47.58 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
-+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-+... ++.-|.....+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 345555666777788888888777765 5677777777788888888887666654432 244577788888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 008022 491 CKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540 (581)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (581)
.+.|+.++|.+++-++.. . + ....+|.+.|++.+|.+.--
T Consensus 755 ~~~~n~~EA~KYiprv~~---l-~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG---L-Q------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCC---h-H------HHHHHHHHhccHHHHHHHHH
Confidence 999999999888876655 1 1 45667888888888876543
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.057 Score=46.46 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=87.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCH
Q 008022 72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQV 151 (581)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (581)
.......|++..|..+|....... +-+...-..++.++...|+++.|..++..+...--.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 445667788888888888877764 3445566677788888888888888888776542221222222233444444333
Q ss_pred ---HHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHHccCChh
Q 008022 152 ---EEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDR--GIDPNVITYSTIISSLCDVGNVE 217 (581)
Q Consensus 152 ---~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 217 (581)
....+-+..-|.|...-..+...+...|+.++|++.+-.+.++ |.. |...-..++..+.-.|..+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 3333333333667777777888888888888888776666554 222 4444555666665555433
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.0094 Score=50.57 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=49.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC
Q 008022 40 YRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAENRFSMINPIYSNMKRDG--MEPNVFTYNILLKALCKNNR 115 (581)
Q Consensus 40 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 115 (581)
+...|++..|.+.|...++..+. -.+..+-.+..++...|+++.|...|..+.+.. .+.-+.....+..+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34455566666666666653322 223445556666666666666666666665542 11123445555555666666
Q ss_pred hhHHHHHHHHHhhC
Q 008022 116 VDGAYKLLVEMGNK 129 (581)
Q Consensus 116 ~~~a~~~~~~~~~~ 129 (581)
.++|...|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666655
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.06 E-value=0.0074 Score=55.40 Aligned_cols=65 Identities=9% Similarity=-0.032 Sum_probs=53.9
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD-A---ITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.+...++.+..+|...|++++|+..|++.++.+ |+ . .+|..++.+|...|++++|++.++++.+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567788888888999999999999999988864 44 2 3588889999999999999999999888
No 228
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.03 E-value=0.017 Score=47.12 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------------CChhhHHHHHHHHHhCCCCCcHHhHHHH
Q 008022 248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSN----------------GSMDEAVSVSYQMEENSCPPNVTTYSAL 311 (581)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (581)
.|..+=....+..|.+-|+..|..+|+.|++.+-+. .+-+-|++++++|...|+-||..++..+
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~l 144 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQML 144 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345555555566666666666666666666655431 1123344444555555544555555554
Q ss_pred HHHHHhc
Q 008022 312 IDGFAKA 318 (581)
Q Consensus 312 ~~~~~~~ 318 (581)
+..+.+.
T Consensus 145 l~iFG~~ 151 (228)
T PF06239_consen 145 LNIFGRK 151 (228)
T ss_pred HHHhccc
Confidence 4444433
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.03 E-value=0.043 Score=41.82 Aligned_cols=76 Identities=8% Similarity=0.048 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC--cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008022 416 LLDGLLRVNRVKEAFELVTEIEKCGI--QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC 491 (581)
Q Consensus 416 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (581)
-.....+.|++++|.+.|+.+..+-. +-....-..++.+|.+.+++++|...+++.++..+.-...-|.....+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34455678999999999999887621 22345566788889999999999999999998753222223444444444
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.02 E-value=0.0026 Score=43.76 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIE----GT-KLD-AITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.+++.+...|...|++++|+..+++.++. |. .|+ ..++..++.+|...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777777643 11 111 34567777777777888888777777654
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.99 E-value=0.35 Score=46.13 Aligned_cols=98 Identities=9% Similarity=-0.054 Sum_probs=39.7
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 008022 376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV 455 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (581)
..|..-+......|+++.+.-.|++..--- ..=...|-..+......|+.+-|..++....+--.+..+.+...-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 344444444555555555555555543200 0111223333333333355555555444443332222222211111122
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 008022 456 CRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 456 ~~~~~~~~a~~~~~~~~~~ 474 (581)
...|++..|..+++.+...
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 2345555555555555544
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.98 E-value=0.26 Score=44.93 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHc
Q 008022 199 NVITYSTIISSLCDVGNVETSLGILGQMFVR 229 (581)
Q Consensus 199 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 229 (581)
+-..+.+++.+..-.|+.+.|.+..+++...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445567778888888888888888888766
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.063 Score=46.80 Aligned_cols=155 Identities=9% Similarity=0.014 Sum_probs=109.1
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHH----HHHHHHHHHhcCCH
Q 008022 386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVT----YNTILHGVCRAGMV 461 (581)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~ 461 (581)
-..|+..+|-..++++.+. .+.|...+...-.++.-.|+.+.-...++++... +.++..+ ...+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3457777777788888764 3667777888888888889888888888888754 3444433 33444556678999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHH
Q 008022 462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYL 539 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (581)
++|++.-++..+.+ +.|...-..+...+--.|++.++.++..+-...-.... -...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988876 55777777788888888999999998887665221100 1223444455566778999999998
Q ss_pred HHHH
Q 008022 540 QKML 543 (581)
Q Consensus 540 ~~~~ 543 (581)
++=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.065 Score=44.47 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 008022 238 FTSLLKGYLLGGRTHEASDLWNRMIREG---FLPNVVAYSTLIHGLCSNGSMDEAVSVS 293 (581)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (581)
+...+-.+....++..|...++...+.+ -..+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444445555566666666666543331 112344555566554 345555555443
No 235
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.035 Score=45.44 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK 495 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 495 (581)
+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 346688888888888888888888888888876654
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.87 E-value=0.07 Score=51.39 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHH
Q 008022 459 GMVVEAFQLLGKMLIEGTKLDAITF-NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEA 535 (581)
Q Consensus 459 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 535 (581)
.+.+.|.++++.+... -|+...| ..-++.+...|++++|++.++++......-| ....+..+++.+.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455566666666554 2333333 2233455556666666666665443111111 223444556666666666666
Q ss_pred HHHHHHHHH
Q 008022 536 FIYLQKMLN 544 (581)
Q Consensus 536 ~~~~~~~~~ 544 (581)
...|.++.+
T Consensus 325 ~~~f~~L~~ 333 (468)
T PF10300_consen 325 AEYFLRLLK 333 (468)
T ss_pred HHHHHHHHh
Confidence 666666655
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.84 E-value=0.018 Score=45.50 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML 472 (581)
Q Consensus 415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 472 (581)
.++..+...|++++|..+.+.+.... |.+...+..++.++...|+...|.+.|+++.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444555555666666555555543 4455555555566666666655555555553
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.62 Score=46.39 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=111.4
Q ss_pred hHhhhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022 3 EKLGEKCEIDGVQYLLQQMKVEGVS--CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR 80 (581)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (581)
+.+.+..-++-|..+-.. .+.+ .-.......+.-+.+.|++++|...|-+.+. .... ..++.-+....+
T Consensus 342 ~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh----HHHHHHhcCHHH
Confidence 334445555555544332 2211 1223444455556789999999988866654 2122 234555555666
Q ss_pred cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHH
Q 008022 81 FSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMR 160 (581)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (581)
...-..+++.+.+.|. .+...-..|+.+|.+.++.+.-.+..+... .|.- ..-....+..+.+.+-.++|.-+..+
T Consensus 413 IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 6667778888888884 566667789999999999988877776554 2211 12245667777778888888888777
Q ss_pred hCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 008022 161 FGSGVSVYNALINGLCKEHKIEEAFWLLCEM 191 (581)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (581)
...+......+++ ..+++++|++.+..+
T Consensus 489 ~~~he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKKHEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred hccCHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 7666655555554 468899999888765
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.72 E-value=0.18 Score=46.94 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTK-LDAITFNIIIYAYCKQGKVNNAIQLLDRI 506 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (581)
+..++.+.|+.++|++.+.++++.... .+..+...|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444555555555555555543211 12234445555555555555555555554
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.67 E-value=0.037 Score=41.74 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKML---------------IEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (581)
.++..++.++++.|+.+....+++..- .....|+..++.+++.+|+..|++..|.++++.+.+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344445555555555555544444332 11234556666666666666666666666666666656
Q ss_pred CCCCCHHhHHHHHH
Q 008022 511 EWNPDIISYTSLLW 524 (581)
Q Consensus 511 ~~~p~~~~~~~l~~ 524 (581)
+++-+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 55445555555544
No 241
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.76 Score=45.16 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCC
Q 008022 310 ALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCG 389 (581)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 389 (581)
.-+.-+...|+..+|.++-.+.. -||-..|-.-+.++...++|++-+++-+... ++.-|.....+|.+.|
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 33344445555555555554443 2455555555555556566555444433321 2444555555566666
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022 390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL 432 (581)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 432 (581)
+.++|.+++.+.... .-...+|.+.|++.+|.++
T Consensus 759 n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 666665555433211 1334455555555555443
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.65 E-value=0.067 Score=40.41 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHh--------------cCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH-
Q 008022 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIR--------------GGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML- 543 (581)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 543 (581)
|..++..++.++++.|+.+....++++.- ...++.|+.....+++.+|+..|++..|+++++...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45678899999999999999999998652 223566888999999999999999999999999985
Q ss_pred HcCCCCCHHhHHHHHHHHHhcc
Q 008022 544 NEGICPNFATWNVLVRSLFSNL 565 (581)
Q Consensus 544 ~~~~~~~~~~~~~l~~~~~~~g 565 (581)
..+++-+..+|..|+.-....-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 4577777889999888554433
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.62 E-value=0.21 Score=48.23 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHH
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTYNT-ILHGVCRAGMVVEAFQLLGKMLIEG---TKLDAITFNIIIYAYCKQGKVNNA 499 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 499 (581)
.+.+.|.++++.+.+. -|+...|.. -.+.+...|++++|++.+++..... .+.....+..++.++.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4556677777777665 344444332 2334455677777777777655321 012333455566667777777777
Q ss_pred HHHHHHHhcCCCCCCCHHhHHHHHH-HHHccCCH-------HHHHHHHHHH
Q 008022 500 IQLLDRIRGGGEWNPDIISYTSLLW-GICNSGGM-------QEAFIYLQKM 542 (581)
Q Consensus 500 ~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~ 542 (581)
.+.|.++.+.... +...|..+.. ++...|+. ++|.++|.+.
T Consensus 325 ~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 7777777763322 3333433333 23445555 6666666665
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.51 E-value=0.1 Score=38.51 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=26.1
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE 58 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 58 (581)
++..|+++.|++.|.+.+..-+. ...+|+.-.+++.-+|+.++|+.=+++...
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555443222 444555555555555555555555554443
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=96.50 E-value=0.32 Score=45.21 Aligned_cols=108 Identities=15% Similarity=0.088 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHH
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 538 (581)
+..+|.++.++..+.+ +.|+.+...++.+..-.|+++.|..+|+++.. ++|| ..+|...++.+.-.|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455556666666654 44666666666666666666666666666666 4553 44555566666666666666666
Q ss_pred HHHHHHcCCCCCH---HhHHHHHHHHHhccCCCChHHHH
Q 008022 539 LQKMLNEGICPNF---ATWNVLVRSLFSNLGHLGPVYIL 574 (581)
Q Consensus 539 ~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 574 (581)
+++..+ ..|.. ......+..|+. ...++|++++
T Consensus 395 i~~alr--LsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 395 IDKSLQ--LEPRRRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred HHHHhc--cCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 666554 23432 223333334444 3344555444
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.14 Score=44.68 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=115.1
Q ss_pred HHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHH----HHHHHHHhcCC
Q 008022 350 LCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYN----ELLDGLLRVNR 425 (581)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~ 425 (581)
....|+..+|-..++++.+. .|.|...++..=.+|.-.|+.+.-...++++... ..++...|. .+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34567888888888888776 4788888888889999999999988888888653 124544333 23345567899
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 008022 426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE---GTKLDAITFNIIIYAYCKQGKVNNAIQL 502 (581)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 502 (581)
+++|.+.-++..+.+ +.|.-........+...|+..++.++..+-... +.-.-...|...+-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999888764 556667777888888899999999988776543 1111123455666777888999999999
Q ss_pred HHHHhc
Q 008022 503 LDRIRG 508 (581)
Q Consensus 503 ~~~~~~ 508 (581)
|++-.-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 987544
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.43 E-value=0.058 Score=49.83 Aligned_cols=66 Identities=17% Similarity=0.037 Sum_probs=57.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 407 LPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI----VTYNTILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
+.+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345668899999999999999999999999986 4553 35888999999999999999999999985
No 248
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.25 Score=38.74 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=62.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh-h--HHHHHHHHHhcCCh
Q 008022 41 RRVGLAEQALKMFYRIREFGLKPTVK-IYNHILDALLAENRFSMINPIYSNMKRDGMEPNVF-T--YNILLKALCKNNRV 116 (581)
Q Consensus 41 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~ 116 (581)
++.+..++|+..|..+.+.|...-+. ....+.....+.|+...|...|.++-.....|-.. - ...-.-.+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555566666666666544322111 12222334455666666666666665542222221 0 01111223456666
Q ss_pred hHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022 117 DGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF 161 (581)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (581)
+......+.+...+.+.....-..|.-+-.+.|++..|.++|.++
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 666666666655544444445555555666666666666666666
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.43 E-value=0.015 Score=34.32 Aligned_cols=41 Identities=15% Similarity=0.400 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHIL 72 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 72 (581)
.++..+...|.+.|++++|.++|+++++..+ .++..|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhh
Confidence 4677788888888888888888888887654 5566665543
No 250
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.41 E-value=0.7 Score=41.80 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 008022 276 LIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM 355 (581)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 355 (581)
-+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... .-++..|..++.+|.+.|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555554433321 24555555566666666666555443221 1133555556666666666
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 008022 356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKL 397 (581)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 397 (581)
..+|..++..+. +..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 666555554411 13344555555555555544
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.35 E-value=0.62 Score=40.60 Aligned_cols=223 Identities=20% Similarity=0.117 Sum_probs=150.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHhhC-CCCCChhhHHHHHHHhhcCCChHHHH
Q 008022 318 AGNLLGASQIWNRMISNGCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE-NCPPNTVTFNTFIKGLCGCGRVDWAM 395 (581)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 395 (581)
.+....+...+.......... ...........+...+.+..+...+...... ..+.....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355566666666665543221 2456667777788888888888888877652 23455666777777777888888888
Q ss_pred HHHHHHhhCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--cccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 396 KLLDQMKQYECLPNITTYNELLD-GLLRVNRVKEAFELVTEIEKCGI--QLNIVTYNTILHGVCRAGMVVEAFQLLGKML 472 (581)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 472 (581)
+.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887654332 122223333 67788899999998888865321 1233334444444667788888888888888
Q ss_pred HCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 473 IEGTKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 473 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
... +. ....+..+...+...++++.|...+..... ..|+ ...+..+...+...+..+.+...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 763 33 466777888888888888888888888887 3444 445555666666667788888888888763
No 252
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.32 E-value=0.94 Score=42.35 Aligned_cols=100 Identities=12% Similarity=-0.006 Sum_probs=70.8
Q ss_pred cccHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHh
Q 008022 442 QLNIVTY-NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK--QGKVNNAIQLLDRIRGGGEWNPDIIS 518 (581)
Q Consensus 442 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~p~~~~ 518 (581)
.|+..++ +.++..+.+.|-.++|...+..+.... +|+...|..++..-.. +-+...+.++++.+...+| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3444433 456777778888899999998888763 6777777777653221 2237788888888888777 56667
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 519 YTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
|.....--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77766666678888888888777755
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.30 E-value=0.014 Score=34.44 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+..++..|.+.|++++|+++++++.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.27 E-value=0.081 Score=50.11 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCCh
Q 008022 102 TYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKI 181 (581)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (581)
..+.++..+.+.|..+.|+++...-. .-.+...+.|+.+.|.++.++.. +...|..|.....++|++
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~-~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD-DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS-THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCH
Confidence 34555555555566655555433221 12344455555555555433332 334555555555555555
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHH
Q 008022 182 EEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLW 258 (581)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (581)
+-|.+.|.+... +..|+-.|.-.|+.+...++.+.....| -++....++...|+.++..+++
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 555555543321 3344444555555555555444444332 1333334444445555544444
No 255
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.25 E-value=0.86 Score=41.25 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=53.4
Q ss_pred HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH
Q 008022 382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV 461 (581)
Q Consensus 382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (581)
+.-+...|+...|.++-++.. .|+...|-..+.+++..++|++-.++-.. +-.+.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344444555555555544432 24555555556666666666554443221 11234555556666666666
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022 462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
.+|..+..++ ++ ..-+..|.+.|++.+|.+...+..
T Consensus 254 ~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 254 KEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 6666555541 11 233445555666666655544443
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.17 E-value=0.68 Score=39.34 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=22.1
Q ss_pred HhcCChhHHHHHHHHHHHCCC--CCCcccHHHHHHHHHccCChhHHHHHHHHHHHc
Q 008022 176 CKEHKIEEAFWLLCEMVDRGI--DPNVITYSTIISSLCDVGNVETSLGILGQMFVR 229 (581)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 229 (581)
.+.|++++|...|+.+....+ +-...+...++-++.+.++++.|...+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 344455555555554443310 111222233334444444444444444444443
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.14 E-value=0.71 Score=39.24 Aligned_cols=184 Identities=10% Similarity=0.047 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (581)
.+..+..-+....+.|++++|...|+.+....+- -...+...++-++-+.++++.|+..+++..+.........|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3444555566667889999999999888864321 23445556667777888899998888888776433333344444
Q ss_pred HHHHHh-------cCChhH---HHHHHHHHhhCCCCCCcc-hHHHHHHHHHccCCHHHHHHHHHHhCCCcchH-HHHHHH
Q 008022 107 LKALCK-------NNRVDG---AYKLLVEMGNKGCAPDAV-SYTTIVSSICKLGQVEEARELAMRFGSGVSVY-NALING 174 (581)
Q Consensus 107 ~~~~~~-------~~~~~~---a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~l~~~ 174 (581)
|.+++. .++... |..-|+++++. -||+. +-.. ...+..+.....-+ -.+.+.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya~dA--------------~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYAPDA--------------KARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcchhhH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 444432 123333 33334444443 22221 1110 00000000000001 134567
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHccCChhHHHHHHHHHHHc
Q 008022 175 LCKEHKIEEAFWLLCEMVDRGIDPNV---ITYSTIISSLCDVGNVETSLGILGQMFVR 229 (581)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 229 (581)
|.+.|.+..|..-+++|.+. .+-.. ..+..+.++|...|-.++|...-.-+...
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888888888888888876 22222 23445567777788777777665544443
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.14 E-value=0.6 Score=38.30 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=44.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 008022 39 SYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDG 118 (581)
Q Consensus 39 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 118 (581)
.|-..|-+.-|+-=|.......+ .-+.+||.+.--+...|+++.|.+.|+...+.+...+-...|.-|. +.--|+++-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 34444555555555555554332 2344566666666666666666666666665542222222222222 224566666
Q ss_pred HHHHHHHHhhC
Q 008022 119 AYKLLVEMGNK 129 (581)
Q Consensus 119 a~~~~~~~~~~ 129 (581)
|.+-+...-+.
T Consensus 152 Aq~d~~~fYQ~ 162 (297)
T COG4785 152 AQDDLLAFYQD 162 (297)
T ss_pred hHHHHHHHHhc
Confidence 65555554443
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.11 E-value=0.13 Score=37.93 Aligned_cols=92 Identities=17% Similarity=0.079 Sum_probs=56.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH--HhHHHHHHHHHccCC
Q 008022 454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDI--ISYTSLLWGICNSGG 531 (581)
Q Consensus 454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~ 531 (581)
+....|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+.++.+..|-.... .+|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456677777777777776642 3456667777777777777777777777776644322111 133334445666777
Q ss_pred HHHHHHHHHHHHHcC
Q 008022 532 MQEAFIYLQKMLNEG 546 (581)
Q Consensus 532 ~~~A~~~~~~~~~~~ 546 (581)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766554
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.09 E-value=0.97 Score=40.33 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=83.0
Q ss_pred hhHHHHHHHhhcCCChH---HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 008022 376 VTFNTFIKGLCGCGRVD---WAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL 452 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 452 (581)
.++..++.+|...+..+ +|..+++.+.... +.....+..-+..+.+.++.+++.+.+..|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566677777766654 3444555553322 2224444455666666788888888888888752 22334444444
Q ss_pred HHHH--hcCCHHHHHHHHHHHHHCCCCcCHH-HHHHH-H---HHHHhcCC------HHHHHHHHHHHhcCCCCCCCHH--
Q 008022 453 HGVC--RAGMVVEAFQLLGKMLIEGTKLDAI-TFNII-I---YAYCKQGK------VNNAIQLLDRIRGGGEWNPDII-- 517 (581)
Q Consensus 453 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-~---~~~~~~g~------~~~A~~~~~~~~~~~~~~p~~~-- 517 (581)
..+. .......|...++.++.....|+.. ....+ + ....+.++ .+...++++.+....+.+.+..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4432 1233456666676666554444443 11111 1 11112111 3444444443332121111222
Q ss_pred -hHHHHHH----HHHccCCHHHHHHHHHHHH
Q 008022 518 -SYTSLLW----GICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 518 -~~~~l~~----~~~~~g~~~~A~~~~~~~~ 543 (581)
+..+++| .+.+.+++++|...|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2334433 3456778888888777554
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.89 E-value=0.27 Score=43.62 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 008022 519 YTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
...+...|...|+.+.|..-|+.+
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHH
Confidence 334444555555555555544443
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.82 E-value=1.1 Score=38.89 Aligned_cols=223 Identities=17% Similarity=0.081 Sum_probs=149.1
Q ss_pred cCChhhHHHHHHHHHhCCCC-CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHH
Q 008022 283 NGSMDEAVSVSYQMEENSCP-PNVTTYSALIDGFAKAGNLLGASQIWNRMISN-GCSPNVVAYTCMVKVLCQNNMFHQAH 360 (581)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 360 (581)
.+....+...+......... ............+...+.+..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666655554322 13566677777788888888888888877652 22334556666677777788888888
Q ss_pred HHHHHHhhCCCCCChhhHHHHHH-HhhcCCChHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 361 SLIEKMAFENCPPNTVTFNTFIK-GLCGCGRVDWAMKLLDQMKQYEC--LPNITTYNELLDGLLRVNRVKEAFELVTEIE 437 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 437 (581)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887653222 222333333 67888999999999988855321 1123334444444667788899999998888
Q ss_pred HcCCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 438 KCGIQL-NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 438 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
... +. ....+..+...+...++++.|...+....... +.....+..+...+...|.++.+...+.+...
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 33 46677777888888888899999998888753 22344555555566677778888888888887
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.80 E-value=0.25 Score=46.87 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=33.4
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 008022 209 SLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDE 288 (581)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (581)
...+.|+++.|.++.++ .++...|..|.......|+++-|.+.|.+... +..|+-.|.-.|+.+.
T Consensus 327 LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 33445555555544322 12344555555555555555555555544322 2333444444555544
Q ss_pred HHHHHHHHHh
Q 008022 289 AVSVSYQMEE 298 (581)
Q Consensus 289 a~~~~~~~~~ 298 (581)
-.++......
T Consensus 392 L~kl~~~a~~ 401 (443)
T PF04053_consen 392 LSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 264
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.78 E-value=1.7 Score=40.72 Aligned_cols=244 Identities=11% Similarity=0.087 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC------ChhhHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHH
Q 008022 252 HEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG------SMDEAVSVSYQMEENS--CPPNVTTYSALIDGFAKAGNLLG 323 (581)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 323 (581)
+....+|+...+. .|+...|+..|..|...- .....+.+++.....+ .+.....|..+.-.+.......+
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3444666666654 455666666666554432 2333444444444332 12334455555555554443322
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChhHH-HHHHHHHhhCCCCCChhhHHHHHHHhhcCCC-h--HHHHHHH
Q 008022 324 ASQIWNRMISNGCSPNVVAYTCMVKVLCQNN-MFHQA-HSLIEKMAFENCPPNTVTFNTFIKGLCGCGR-V--DWAMKLL 398 (581)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~a~~~~ 398 (581)
.-..+...++..+...|..-+....... +++-- ..++......-..+....|+... .++ . +.-..++
T Consensus 377 ---~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 377 ---VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred ---HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 2222222223345555554444443221 22111 11222222221112222233222 122 1 1112233
Q ss_pred HHHhhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC
Q 008022 399 DQMKQYECLPNITTY-NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC--RAGMVVEAFQLLGKMLIEG 475 (581)
Q Consensus 399 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 475 (581)
....+.+ .|+..++ +.++..+.+.+-.++|...+..+... .+|+...|..++..=. ..-+..-+.++|+.+...-
T Consensus 449 ~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 3333333 3455443 56778888899999999999999886 4677777777765422 1234788999999998872
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
..|+..|...+..-...|..+.+-.++.++.+
T Consensus 527 -g~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 -GADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred -CCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 26888888888777789999988888877765
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.69 E-value=0.47 Score=37.14 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=21.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008022 7 EKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIR 57 (581)
Q Consensus 7 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 57 (581)
+.++.+++..+++.+..-.+. ..+.-..-...+..+|+|.+|..+|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 334444444444444433221 22222333333444455555555555444
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.82 Score=36.01 Aligned_cols=132 Identities=12% Similarity=0.125 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc-hHHH
Q 008022 63 PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPN-VFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAV-SYTT 140 (581)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 140 (581)
.+...|...++ +.+.+..++|+.-|..+.+.|...- +...........+.|+...|...|+++-.....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 44556666555 4567778888888988887753222 2233344555678899999999999887764333322 1111
Q ss_pred --HHHHHHccCCHHHHHHHHHHhCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008022 141 --IVSSICKLGQVEEARELAMRFGSG-----VSVYNALINGLCKEHKIEEAFWLLCEMVDRG 195 (581)
Q Consensus 141 --l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (581)
-.-.+...|.++......+.+..+ ......|.-+-.+.|++..|.++|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 123456778888888888877322 2334556667778899999999998877653
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.51 E-value=0.89 Score=35.51 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008022 415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG 494 (581)
Q Consensus 415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 494 (581)
.++..+...+.+.....+++.+...+ +.+...++.++..|++.+ ..+..+.+.. . .+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34444444555555555555555544 244555555555555432 2333333321 0 11122233455555555
Q ss_pred CHHHHHHHHHHH
Q 008022 495 KVNNAIQLLDRI 506 (581)
Q Consensus 495 ~~~~A~~~~~~~ 506 (581)
-++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.41 E-value=0.96 Score=35.31 Aligned_cols=84 Identities=11% Similarity=0.098 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 008022 35 SVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNN 114 (581)
Q Consensus 35 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 114 (581)
.++..+...+.+.....+++.+...+. .++..++.++..+++.+. ......++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 445555556667777777777666553 566666777776665432 222222221 112233334555555555
Q ss_pred ChhHHHHHHHHH
Q 008022 115 RVDGAYKLLVEM 126 (581)
Q Consensus 115 ~~~~a~~~~~~~ 126 (581)
-++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.28 E-value=0.87 Score=34.01 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=24.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+......|+-+.-.+++..+.+.+ .+++..+..++.+|.+.|+..++.+++.++-+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444555555555555544322 44555555555555555555555555555544
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.27 E-value=7.2 Score=44.53 Aligned_cols=322 Identities=12% Similarity=0.054 Sum_probs=162.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022 240 SLLKGYLLGGRTHEASDLWNRMIREGFL--PNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK 317 (581)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (581)
.+..+-.+.+.+.+|.-.++.-.....+ .....+..+...|...+++|...-+...-.. ++..+ .-+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 3455666778888888888874221111 1222344444588888888887776553111 22223 33445567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH-HHHHHhhcCCChHHHHH
Q 008022 318 AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN-TFIKGLCGCGRVDWAMK 396 (581)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 396 (581)
.|++..|...|+++.+.+.+ ...+++.++......+.++......+...... .+....++ .-+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 89999999999999887432 36677777777777788877777666555432 22332232 23444456677776666
Q ss_pred HHHHHhhCCCCCChhhHHH--HHHHHHhcC--CHHHHHHHHHHHHHcCCcc---------cHHHHHHHHHHHHhcCCHHH
Q 008022 397 LLDQMKQYECLPNITTYNE--LLDGLLRVN--RVKEAFELVTEIEKCGIQL---------NIVTYNTILHGVCRAGMVVE 463 (581)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 463 (581)
... .. +..+|.. +...+.+.. +.-.-.+.++.+.+.-+.| -...|..++....-. +.+.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence 554 11 2222222 222222222 1111112333332211111 012233333222111 1111
Q ss_pred HHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-----CHHhHHHHHHHHHccCCHHHHHH
Q 008022 464 AFQLLGKMLIE-GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-----DIISYTSLLWGICNSGGMQEAFI 537 (581)
Q Consensus 464 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~ 537 (581)
-.+.+...... ....+...|..-+..-....+..+-+-.+++..-....+| -..+|...++.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11111111100 0111122222222221112223333322333221111122 24578888888888999999998
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhhc
Q 008022 538 YLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMAN 580 (581)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 580 (581)
.+-.+.+.+ .|. .+-..+.-++..|+...|+.++++.+++
T Consensus 1692 all~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 888887754 233 3445666678889999999998887753
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.22 E-value=0.019 Score=31.46 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=11.2
Q ss_pred CHHhHHHHHHHHHccCCHHHHH
Q 008022 515 DIISYTSLLWGICNSGGMQEAF 536 (581)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~ 536 (581)
++.+|..++..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555555555555555543
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.22 E-value=0.27 Score=42.75 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444445555555555555555555443 3344455555555555555555555555443
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.16 E-value=0.59 Score=41.57 Aligned_cols=167 Identities=8% Similarity=-0.019 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Cc--CHHHH
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKC-GIQL---NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT---KL--DAITF 483 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~ 483 (581)
|..+.+++.+..++.+++.+-+.-... |..| .-.....+..++.-.+.++++++.|+.+.+... .| ...++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 344444444444455555444433321 1111 112333456666677788888888888875411 11 23467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCC-C----HHhHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCC-
Q 008022 484 NIIIYAYCKQGKVNNAIQLLDRIRG---GGEWNP-D----IISYTSLLWGICNSGGMQEAFIYLQKML----NEGICPN- 550 (581)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~- 550 (581)
..+...|.+..|+++|.-+..++.+ ..++.. + ..+.-.+..++...|..-+|.+.-++.. ..|-.+-
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 8888889999999998888777654 122211 1 1233456667788888888888877663 3443332
Q ss_pred HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 551 FATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
......+...|...|+.+.|..-++..|.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23345666778888999888888877653
No 274
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.08 E-value=1 Score=33.68 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=27.5
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE 405 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 405 (581)
.+..+...|.-++-.+++.++...+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344445555555555555554322 4455555555555555555555555555555544
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=1.8 Score=36.43 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 008022 273 YSTLIHGLCSNGSMDEAVSVSYQME 297 (581)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (581)
|..-..+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444445555555555555444433
No 276
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.63 E-value=0.052 Score=29.71 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=24.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008022 18 LQQMKVEGVSCSEGVFISVINSYRRVGLAEQAL 50 (581)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 50 (581)
|++.++.++. +..+|..+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666544 8888888888888888888875
No 277
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.60 E-value=4.2 Score=38.45 Aligned_cols=93 Identities=10% Similarity=0.121 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 008022 341 VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420 (581)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (581)
...-.++..+.....+.-...+..+|...| .+...+..++++|... ..+.-..+|+++.+..+ .|+..-..|+..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 333444444444444444444444444432 3344444444544444 33444444444444332 1333333333333
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008022 421 LRVNRVKEAFELVTEIEK 438 (581)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~ 438 (581)
.+ ++.+.+..+|..+..
T Consensus 143 Ek-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 143 EK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HH-hchhhHHHHHHHHHH
Confidence 33 444444444444443
No 278
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.55 E-value=6.2 Score=40.22 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=40.0
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCcc-------hHHHHH-HHHHccCCHHHHHHHHHHh----C-----CCcchHHHHH
Q 008022 110 LCKNNRVDGAYKLLVEMGNKGCAPDAV-------SYTTIV-SSICKLGQVEEARELAMRF----G-----SGVSVYNALI 172 (581)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~----~-----~~~~~~~~l~ 172 (581)
.....++++|..++.++...-..|+.. .+..+- ......|++++|.++.+.. + .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776552222222 122211 1223345556665554443 1 2223344444
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 008022 173 NGLCKEHKIEEAFWLLCEM 191 (581)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~ 191 (581)
.+..-.|++++|..+....
T Consensus 505 ~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 505 EAAHIRGELTQALALMQQA 523 (894)
T ss_pred HHHHHhchHHHHHHHHHHH
Confidence 5555555555555544443
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.53 E-value=0.099 Score=28.55 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=13.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+|..++.++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555554
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.50 E-value=0.091 Score=28.70 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.+|..++.+|...|++++|+..|+++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777777777777777776
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.45 E-value=0.097 Score=29.13 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=18.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
+|..|+..|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677778888888888888888754
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.30 E-value=0.1 Score=28.99 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022 482 TFNIIIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.27 E-value=0.12 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=14.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.|..++.++...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.25 E-value=0.79 Score=32.37 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022 29 SEGVFISVINSYRRVGLAE--QALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (581)
+.+.+..-...|+...+.+ +.++.++.+......|++.+..+.+++|.+.+++..|.++|+-++..- .+....|..+
T Consensus 7 t~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~ 85 (108)
T PF02284_consen 7 TDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYI 85 (108)
T ss_dssp -HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHH
Confidence 3444455555555555444 777778888777788888888888888888888888888888877552 2233366666
Q ss_pred HHH
Q 008022 107 LKA 109 (581)
Q Consensus 107 ~~~ 109 (581)
++-
T Consensus 86 lqE 88 (108)
T PF02284_consen 86 LQE 88 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.23 E-value=0.11 Score=28.29 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
..+..++.++...|++++|++.++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777776
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.23 E-value=8.7 Score=40.61 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 008022 310 ALIDGFAKAGNLLGASQIWNRMISNGCSPNVV----AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGL 385 (581)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (581)
..+..-.+.|-+..|..++. |+.. .|......+.....+++|.-.|+..-+. ...+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence 33334444555555555443 3333 3444444555566667766666654322 3345666
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022 386 CGCGRVDWAMKLLDQMKQYECLPNIT--TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE 463 (581)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (581)
..+|+|.+|..+..++... .+.. +-..|..-+...+++-+|-++..+.... |. ..+..+++...+++
T Consensus 976 ~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHH
Confidence 7777777777776665431 1111 1144556666677777777776665532 11 12233445555555
Q ss_pred HHHHHHH
Q 008022 464 AFQLLGK 470 (581)
Q Consensus 464 a~~~~~~ 470 (581)
|..+...
T Consensus 1045 Alrva~~ 1051 (1265)
T KOG1920|consen 1045 ALRVASK 1051 (1265)
T ss_pred HHHHHHh
Confidence 5554433
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=2.5 Score=34.33 Aligned_cols=93 Identities=19% Similarity=0.086 Sum_probs=66.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN 528 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 528 (581)
+...+...|++++|...++..+......+ ..+-..|.......|.+++|+..++.... .+ -.......-+..+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~--w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ES--WAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-cc--HHHHHHHHhhhHHHH
Confidence 34567788999999999988876421111 12234566778889999999999988776 11 123334566778899
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 008022 529 SGGMQEAFIYLQKMLNEG 546 (581)
Q Consensus 529 ~g~~~~A~~~~~~~~~~~ 546 (581)
.|+.++|+.-|++.++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999998864
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.14 E-value=1.4 Score=33.94 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=23.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008022 8 KCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE 58 (581)
Q Consensus 8 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 58 (581)
.++.+++..++..+.--.+. ..+.-..-...+...|+|++|..+|+.+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 45555555555555443222 222223333344555555555555555554
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.05 E-value=4.2 Score=36.32 Aligned_cols=163 Identities=10% Similarity=-0.001 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 412 TYNELLDGLLRVNRVK---EAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
++..++.+|...+..+ +|.++++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|+..- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 5667778888776554 456666666544 23335555556677777899999999999999873 212233333333
Q ss_pred ---HHHhcCCHHHHHHHHHHHhcCCCCCCCHH-hHH----HHHHHHHccCC------HHHHHHHHHHHHHc-CCCCCHHh
Q 008022 489 ---AYCKQGKVNNAIQLLDRIRGGGEWNPDII-SYT----SLLWGICNSGG------MQEAFIYLQKMLNE-GICPNFAT 553 (581)
Q Consensus 489 ---~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~----~l~~~~~~~g~------~~~A~~~~~~~~~~-~~~~~~~~ 553 (581)
-+.... ...|...+..+.. ..+.|... ... ..++.....++ .+....+++...+. +.+.+..+
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~-~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLL-NRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 334443 3455555555443 22334332 111 11222222222 34444445533221 22223322
Q ss_pred HH---HH----HHHHHhccCCCChHHHHHHHh
Q 008022 554 WN---VL----VRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 554 ~~---~l----~~~~~~~g~~~~a~~~~~~~~ 578 (581)
.. .+ +..+++.+++++|.++++-.+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 22 235566799999999998554
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.04 E-value=1.3 Score=34.02 Aligned_cols=102 Identities=10% Similarity=0.055 Sum_probs=57.9
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHH
Q 008022 446 VTYNTILHGV---CRAGMVVEAFQLLGKMLIEGTKLDAI-TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS 521 (581)
Q Consensus 446 ~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 521 (581)
...+.|+... ...++++++..+++.+.-. .|+.. .-..-+..+...|++++|+.+++.+.+..+.. +..-..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~--p~~kAL 83 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP--PYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc--hHHHHH
Confidence 3444444433 3578899999999888875 34332 22233456788899999999999998833222 222223
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 522 LLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
+..++...|+. .=..+-+++++.|-+|+..
T Consensus 84 ~A~CL~al~Dp-~Wr~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 84 LALCLNAKGDA-EWHVHADEVLARDADADAV 113 (153)
T ss_pred HHHHHHhcCCh-HHHHHHHHHHHhCCCHhHH
Confidence 33334444442 3344445555655444433
No 291
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.03 E-value=1.1 Score=35.71 Aligned_cols=112 Identities=11% Similarity=0.020 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHH---hcCC-------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-
Q 008022 426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVC---RAGM-------VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG- 494 (581)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 494 (581)
++.|.+..+.....+ +.|...++....++. +... +++|+.-|++++..+ +....++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHh
Confidence 456666666654443 556655554444443 3333 344455555555533 223467778888887654
Q ss_pred ---C-------HHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 008022 495 ---K-------VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGIC 548 (581)
Q Consensus 495 ---~-------~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 548 (581)
+ +++|.+.|+++.. .+|+...|+.-+... ++|-++..++.+++..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 2 4555666666665 568777776655543 3577777777666543
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.87 E-value=0.9 Score=39.69 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCcchHH
Q 008022 65 VKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGN-----KGCAPDAVSYT 139 (581)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 139 (581)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456667777777777777777777777665 56677777777777777777777777777654 36677666655
Q ss_pred HHHHH
Q 008022 140 TIVSS 144 (581)
Q Consensus 140 ~l~~~ 144 (581)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55544
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.81 E-value=6.2 Score=37.40 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=51.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 475 (581)
-...-..+..++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+.-+..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 3444456777788899999999999999875322 234467788999999999999999999976543
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=8.2 Score=38.72 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=87.5
Q ss_pred hhhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGVSC---SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRF 81 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (581)
+.+.+.+++|++.-+..... .+ .-.+....+..+...|++++|-...-.|.. .+...|...+..+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence 45666677777666544422 22 234556667777778888888877777765 5666777777777666665
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022 82 SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF 161 (581)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (581)
..... -+.......++..|..++..+.. .+. ...++-.... +...|+.+.-.- ....-+++.
T Consensus 440 ~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~W----p~~Lys~l~iis-------a~~~q~~q~ 501 (846)
T KOG2066|consen 440 TDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEW----PGHLYSVLTIIS-------ATEPQIKQN 501 (846)
T ss_pred chhhc---cCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhC----ChhhhhhhHHHh-------hcchHHHhh
Confidence 44332 22222222456677777777665 222 2222222222 222222221110 001111111
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008022 162 GSGVSVYNALINGLCKEHKIEEAFWLLCEMVD 193 (581)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (581)
..+......|+..|...+++..|++++-..++
T Consensus 502 Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 502 SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 22223334477788888888888887766543
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.65 E-value=0.85 Score=37.18 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH--H
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT--S 521 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~ 521 (581)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+..+++.....|++..+...+.++........|...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777888888888888888888877643332 34566777778888888888888877765221111222111 1
Q ss_pred --HHHHHHccCCHHHHHHHHHHHH
Q 008022 522 --LLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 522 --l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
-+-.+...+++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1223456788888888876663
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.60 E-value=0.99 Score=36.81 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC---CChhhHHH
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAENRFSMINPIYSNMKRDGME---PNVFTYNI 105 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ 105 (581)
..+..++..|.+.|+.+.|++.|.++...... .-.+.+-.+++.....+++..+...+.++...-.. ++......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56778899999999999999999998864333 33456778888888899999888888877654212 22111111
Q ss_pred HHH--HHHhcCChhHHHHHHHHHhh
Q 008022 106 LLK--ALCKNNRVDGAYKLLVEMGN 128 (581)
Q Consensus 106 l~~--~~~~~~~~~~a~~~~~~~~~ 128 (581)
+.. .+...+++..|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 12356788888777776543
No 297
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.42 E-value=1.6 Score=35.49 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=41.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCccc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLN-----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ 493 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (581)
-+...|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.-..+.+..+ +.....+..-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 3445555555555555555431 221 1233333344445555555555555555443 22223333334455555
Q ss_pred CCHHHHHHHHHHHhc
Q 008022 494 GKVNNAIQLLDRIRG 508 (581)
Q Consensus 494 g~~~~A~~~~~~~~~ 508 (581)
..+++|++-|+++.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555555
No 298
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.42 E-value=10 Score=38.77 Aligned_cols=226 Identities=12% Similarity=0.015 Sum_probs=116.5
Q ss_pred HHccCChhHHHHHHHHHhhCCCCCChh-------hHHHH-HHHhhcCCChHHHHHHHHHHhhC----CCCCChhhHHHHH
Q 008022 350 LCQNNMFHQAHSLIEKMAFENCPPNTV-------TFNTF-IKGLCGCGRVDWAMKLLDQMKQY----ECLPNITTYNELL 417 (581)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 417 (581)
.....++.+|..++.++...-..|+.. .++.+ .......|+++.|.++.+..... ...+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776542222211 22222 22334568888888887776542 2224455666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHH-----HHHHhcCCHHH--HHHHHHHHHHC---CCC---cCHHHHH
Q 008022 418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL-----HGVCRAGMVVE--AFQLLGKMLIE---GTK---LDAITFN 484 (581)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~--a~~~~~~~~~~---~~~---~~~~~~~ 484 (581)
.+..-.|++++|..+..+..+..-.-+...+..+. ..+...|+... ....+...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77788899999998888766542223333332222 23445663322 22233322221 111 1122344
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCCHHh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHhHHHH
Q 008022 485 IIIYAYCK-QGKVNNAIQLLDRIRGGGEWNPDIIS--YTSLLWGICNSGGMQEAFIYLQKMLNEGICPN----FATWNVL 557 (581)
Q Consensus 485 ~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l 557 (581)
.+..++.+ .+...++..-++--.. ....|-... +..|+......|+.++|...++++......+. .......
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 44455544 1222333333333332 111222222 23678888899999999999988865433332 2222222
Q ss_pred HHHH--HhccCCCChHHHHHH
Q 008022 558 VRSL--FSNLGHLGPVYILDD 576 (581)
Q Consensus 558 ~~~~--~~~g~~~~a~~~~~~ 576 (581)
+... ...|+.+++..++.+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 2222 235777777666554
No 299
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.32 E-value=1.4 Score=37.91 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 008022 287 DEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN 320 (581)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (581)
+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3466777777777777777777777777766654
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.20 E-value=11 Score=38.35 Aligned_cols=118 Identities=9% Similarity=-0.023 Sum_probs=70.1
Q ss_pred cCChhhHHHHHHHHHhCC-CCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 008022 283 NGSMDEAVSVSYQMEENS-CPPNV--TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA 359 (581)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 359 (581)
..+.+.|...+....... ..+.. ..+..+.......+..+++...+....... .+......-++.-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345678888888765443 22221 223333333333322556666666544332 2444445555555688888888
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhh
Q 008022 360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ 403 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 403 (581)
...+..|.... .....-.--+..++...|+.++|...|+.+..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888875532 23444555667776778999999999988743
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.05 E-value=3.6 Score=32.41 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 457 RAGMVVEAFQLLGKMLIEGTKLDAIT-FNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 457 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.++.+++..++.-+... .|.... -..-+..+...|++.+|+.+|+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555443 222221 11223344555555555555555544
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.89 E-value=1.9 Score=34.98 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=40.7
Q ss_pred hhcCCChHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022 385 LCGCGRVDWAMKLLDQMKQYECLPNI----TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM 460 (581)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (581)
+...|++++|..-|...+..-..... ..|..-..++.+.+.++.|++-....++.+ +.....+..-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 44555555555555555543211111 122222334445555555555555555442 2223333333444555555
Q ss_pred HHHHHHHHHHHHHC
Q 008022 461 VVEAFQLLGKMLIE 474 (581)
Q Consensus 461 ~~~a~~~~~~~~~~ 474 (581)
+++|++-|.+++..
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555543
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.76 E-value=4.2 Score=32.48 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=16.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 53 FYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
+..+...+.+|+...+..+++.+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334445555666666666666666665443
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.69 E-value=3.3 Score=33.19 Aligned_cols=107 Identities=14% Similarity=0.035 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHH---HHHHHHhcCCHHHHHHHHH-------HHHHcCCccc-HHHHHHHHHHHHhcC
Q 008022 391 VDWAMKLLDQMKQYECLPNITTYNE---LLDGLLRVNRVKEAFELVT-------EIEKCGIQLN-IVTYNTILHGVCRAG 459 (581)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~-~~~~~~l~~~~~~~~ 459 (581)
++.|.+.++.....+ +.|...++. .+.-+.+..+..++.++++ +.+. +.|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 456666666654444 344444333 3333333444344444444 4444 3444 456677777776433
Q ss_pred ----C-------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 460 ----M-------VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 460 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+ +++|...|+++... .|+...|+.-+... ++|-++..++.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHH
Confidence 2 45555566655553 67777776655433 456666666654
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.57 E-value=16 Score=38.77 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=25.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAI--TFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.+|..+|++.+|..+..++... .+.. +-..|+..+...+++-+|-++......
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 34455555555555555544321 1111 113444555555555555555555443
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.41 E-value=4.7 Score=32.21 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=14.2
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022 88 YSNMKRDGMEPNVFTYNILLKALCKNNRV 116 (581)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (581)
++.+.+.+++|+...+..++..+.+.|++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33333444555555555555555555543
No 307
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=15 Score=37.59 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022 168 YNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQ 225 (581)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 225 (581)
+.+.-+.+...|+.+.....-.-+.. |..++..+...+.+++|++++..
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566666666655444432 44566677777777777777654
No 308
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.10 E-value=6.5 Score=33.07 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=10.3
Q ss_pred HHHhcCCHHHHHHHHHHHhc
Q 008022 489 AYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~ 508 (581)
.-+..+++.+|+++|+++..
T Consensus 163 yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.04 E-value=6.2 Score=32.73 Aligned_cols=183 Identities=15% Similarity=0.060 Sum_probs=111.9
Q ss_pred HHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 008022 349 VLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKE 428 (581)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (581)
.|-..|-+.-|..-|.+..... |.-+..||-+.-.+...|+++.|.+.|+...+.+..-+....|.-+. +.--|+++-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 3556677777777777766653 55678899998888999999999999999988764333333333332 234588998
Q ss_pred HHHHHHHHHHcCCcccH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008022 429 AFELVTEIEKCGIQLNI--VTYNTILHGVCRAGMVVEAFQLL-GKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR 505 (581)
Q Consensus 429 a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 505 (581)
|.+=+...-+.+ +.|+ ..|..+. .+.-++.+|..-+ ++... .|..-|...+-.|.- |++. ...++++
T Consensus 152 Aq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMER 221 (297)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHH
Confidence 888777776653 3233 2232222 2344677776543 44433 244444433322221 3222 2334444
Q ss_pred HhcCCCCCCC------HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 506 IRGGGEWNPD------IISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 506 ~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+.. +.-+.. .++|..++.-+...|+.++|..+|+-++.
T Consensus 222 ~~a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 222 LKA-DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHh-hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444 111111 34778888889999999999999998875
No 310
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.03 E-value=3.8 Score=35.37 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHhhc-----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHH
Q 008022 374 NTVTFNTFIKGLCG-----CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTY 448 (581)
Q Consensus 374 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 448 (581)
+...|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-. ..|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHH
Confidence 44445444444432 2444555555566666666666666666665543311 0111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022 449 NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK 495 (581)
Q Consensus 449 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 495 (581)
....-.| -.+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 129 Q~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 12234577788888888888888888888888877664
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.80 E-value=11 Score=35.14 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=45.2
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLP---NITTYNELLDGLLRVNRVKEAFELVTEIEK 438 (581)
Q Consensus 373 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 438 (581)
....++..++..+.+.|.++.|...+..+...+... .......-+..+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777888888888888888888876643221 223333445566677888888888887776
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.76 E-value=0.29 Score=26.62 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
|..++..|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444445555555555444443
No 313
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.62 E-value=17 Score=36.91 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=9.7
Q ss_pred HHhccCCCChHHHHHH
Q 008022 561 LFSNLGHLGPVYILDD 576 (581)
Q Consensus 561 ~~~~g~~~~a~~~~~~ 576 (581)
++.+|++++|++.+++
T Consensus 515 ~~~~g~~~~AL~~i~~ 530 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEK 530 (613)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHh
Confidence 4556777777776665
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.49 E-value=9 Score=33.46 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHh
Q 008022 482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN-----EGICPNFAT 553 (581)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 553 (581)
++......|..+|.+.+|.++.++..+ +.| +...+..++..+...|+--.|.+.++++.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt---ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT---LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 455667889999999999999999998 567 777888999999999998888888887743 355555443
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.48 E-value=5.7 Score=32.67 Aligned_cols=75 Identities=11% Similarity=-0.048 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCcchHHHHHHHHHccCCHHHHH
Q 008022 80 RFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNK---GCAPDAVSYTTIVSSICKLGQVEEAR 155 (581)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 155 (581)
.-+.|.+.|-.+...+.--++.....+...| ...+.+++.+++....+. +-.+|+..+.+|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3456777787777766444555555555444 577888888888877654 33667888889999999998888875
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.47 E-value=3.6 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 45 LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108 (581)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (581)
+.-++++.++.+......|++.+..+.+++|.+.+++..|.++|+-++... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444677777777777777888888888888888888888888888766431 223445655543
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.39 E-value=18 Score=36.81 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCc---CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 458 AGMVVEAFQLLGKMLIEGTKL---DAITF-----NIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~~~~~---~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.|+..+..+..........+. ....| ..+...+...|+.++|.....+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677776555555443321111 33344 2344557778999998888777654
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=2.2 Score=40.97 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=11.9
Q ss_pred ccHHHHHHHHHccCCHHHHHHHHHH
Q 008022 236 HSFTSLLKGYLLGGRTHEASDLWNR 260 (581)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (581)
.-|..|.++....+++..|.+.|.+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHh
Confidence 3444444444444555444444443
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.93 E-value=19 Score=36.11 Aligned_cols=272 Identities=11% Similarity=0.022 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHH-----HHhcCChhhHHHHHHHHHh-------CCCCCcHHhHHHHHHHHHhc
Q 008022 251 THEASDLWNRMIREGFLPNVVAYSTLIHG-----LCSNGSMDEAVSVSYQMEE-------NSCPPNVTTYSALIDGFAKA 318 (581)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 318 (581)
...+.++++...+.| +...-..+..+ +....+++.|+.+++.+.+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666665554 22221122211 2344566777777766655 33 233445555556553
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhh----
Q 008022 319 G-----NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ---NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLC---- 386 (581)
Q Consensus 319 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 386 (581)
. +...|..++......|.+ +.... +...+.. ..+...|..+|......|.. . .+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCC
Confidence 2 456677777777766532 33222 2222222 23567888888888777632 2 2222222221
Q ss_pred cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH---Hh----cC
Q 008022 387 GCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV---CR----AG 459 (581)
Q Consensus 387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~ 459 (581)
-..+...|..++++..+.| .|...-....+..+.. ++++.+.-.+..+...|.+.....-..++... .. ..
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence 2346778888888887766 2232222222333333 66777766666666655332222221121111 01 22
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCC
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ----GKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGG 531 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 531 (581)
+...+...+.+....| +......+...|... .+++.|...+...... + ......+...+-. ..
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~----~-~~~~~nlg~~~e~g~g~~~- 524 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ----G-AQALFNLGYMHEHGEGIKV- 524 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh----h-hHHHhhhhhHHhcCcCcch-
Confidence 4566777777766654 555556666666543 3588888888887762 2 3344344443322 23
Q ss_pred HHHHHHHHHHHHHc
Q 008022 532 MQEAFIYLQKMLNE 545 (581)
Q Consensus 532 ~~~A~~~~~~~~~~ 545 (581)
+..|.+++++....
T Consensus 525 ~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 525 LHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHhc
Confidence 67788888877664
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.87 E-value=0.48 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 517 ISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.+|..++..|...|++++|...|++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4677889999999999999999999987
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.60 E-value=0.59 Score=41.20 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS 529 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 529 (581)
-.+.|.+.|.+++|+.+|.+.+... +-++.++..-+.+|.+...+..|..-+..+.. +.. =...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999988753 33888888888999999999998888887776 211 122455555555566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008022 530 GGMQEAFIYLQKMLNEGICPNFATWNVLVRS 560 (581)
Q Consensus 530 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 560 (581)
|+..+|.+-++..++ ++|+..-+......
T Consensus 179 g~~~EAKkD~E~vL~--LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLA--LEPKNIELKKSLAR 207 (536)
T ss_pred hhHHHHHHhHHHHHh--hCcccHHHHHHHHH
Confidence 777888888888876 57775555444433
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.44 E-value=0.6 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008022 32 VFISVINSYRRVGLAEQALKMFYRIREFG 60 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 60 (581)
++..++.++.+.|++++|.+.|++++...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45567777888888888888888887643
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.34 E-value=0.41 Score=37.56 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008022 72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLV 124 (581)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 124 (581)
+..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544333444555555555555554444444444
No 324
>PRK09687 putative lyase; Provisional
Probab=90.34 E-value=13 Score=33.24 Aligned_cols=202 Identities=11% Similarity=0.000 Sum_probs=104.5
Q ss_pred ChhhHHHHHHHHHccCCh----hHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCCh-----HHHHHHHHHHhhCCCCCC
Q 008022 339 NVVAYTCMVKVLCQNNMF----HQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRV-----DWAMKLLDQMKQYECLPN 409 (581)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 409 (581)
|...-...+.++.+.|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444445555555542 3455555544322 23444444444444333211 122333333222 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG-MVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
...-...+.++.+.++ ++++..+-.+.+. ++...-...+.++.+.+ +.+.+...+..++. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4555556666666665 4566666666542 33334333444444432 23456666666664 446666666777
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022 489 AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF 562 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (581)
++.+.|+ ..|+..+-+..+. ++. ....+.++...|.. +|+..+.++.+. .||..+....+.++.
T Consensus 215 aLg~~~~-~~av~~Li~~L~~----~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKK----GTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcC----Cch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777777 4566666665551 222 33566677777774 677777777763 356666555555543
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.17 E-value=23 Score=35.97 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHccCCHHHHHHHHH----HhCCCcchHHHHHHHHHhc
Q 008022 140 TIVSSICKLGQVEEARELAM----RFGSGVSVYNALINGLCKE 178 (581)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~----~~~~~~~~~~~l~~~~~~~ 178 (581)
.++-.+.|+|.+++|.++.. .+......+-..+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 34455667777777777762 2244455566666666554
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.13 E-value=0.78 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 517 ISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.+++.++..|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777888888887777743
No 327
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.10 E-value=9.5 Score=33.48 Aligned_cols=119 Identities=11% Similarity=0.130 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cCC-cchHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhH
Q 008022 43 VGLAEQALKMFYRIRE-FGLKPTVKIYNHILDALLA-ENR-FSMINPIYSNMKRD-GMEPNVFTYNILLKALCKNNRVDG 118 (581)
Q Consensus 43 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 118 (581)
+.-..+|+++|+.... ..+-.|..+...+++.... .+. ...--++.+-+... +-.++..+...++..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4445667766663322 2233566666777766665 222 22222233333322 235666677777778888888888
Q ss_pred HHHHHHHHhhC-CCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022 119 AYKLLVEMGNK-GCAPDAVSYTTIVSSICKLGQVEEARELAMRF 161 (581)
Q Consensus 119 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (581)
-.++++..... +...|...|...++.....|+..-...+...-
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 88877776655 45557777888888888888877777776654
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.99 E-value=23 Score=35.55 Aligned_cols=272 Identities=13% Similarity=0.041 Sum_probs=155.7
Q ss_pred hhHHHHHHHHHHHcCCCCCcccHHHHHHH-----HHccCCHHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHHhc
Q 008022 216 VETSLGILGQMFVRGCNPNIHSFTSLLKG-----YLLGGRTHEASDLWNRMIR-------EGFLPNVVAYSTLIHGLCSN 283 (581)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 283 (581)
...+.++++...+.| +......+..+ +....+.+.|+.+++...+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777765 22222222222 3356788888888887766 44 333455566666664
Q ss_pred C-----ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----cc
Q 008022 284 G-----SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK-AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLC----QN 353 (581)
Q Consensus 284 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 353 (581)
. +.+.|..++....+.|. |+.......+..... ..+...|.++|......|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 55668888888887763 344333333322222 24577899999988887643 22222333222 23
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH-HHHH---Hh----cCC
Q 008022 354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL-LDGL---LR----VNR 425 (581)
Q Consensus 354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~----~~~ 425 (581)
.+.+.|..++.+....+ .+........+..+.. +.++.+.-.+..+.+.+.. ...+-... +... .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 47788999999988887 3332222333334444 7777777777666665533 11111111 1111 11 225
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHH
Q 008022 426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA----GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVN 497 (581)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 497 (581)
...+...+......| +......+.+.|..- .+++.|...+......+ ......+...+-. .. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 566777777766654 455555555555433 46788888888887654 4444445444432 23 67
Q ss_pred HHHHHHHHHhc
Q 008022 498 NAIQLLDRIRG 508 (581)
Q Consensus 498 ~A~~~~~~~~~ 508 (581)
.|.+++++..+
T Consensus 527 ~a~~~~~~~~~ 537 (552)
T KOG1550|consen 527 LAKRYYDQASE 537 (552)
T ss_pred HHHHHHHHHHh
Confidence 88888888876
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.82 E-value=0.85 Score=26.15 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.+++.++..|...|++++|..+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888888888888888764
No 330
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.75 E-value=15 Score=33.09 Aligned_cols=128 Identities=13% Similarity=0.189 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHc--cCC----hhHHHHHHHHHHHcCC---CCCcccHHHHHHHHHccCCH-
Q 008022 182 EEAFWLLCEMVDRGIDPNVITYSTIISSLCD--VGN----VETSLGILGQMFVRGC---NPNIHSFTSLLKGYLLGGRT- 251 (581)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 251 (581)
++.+.+++.|.+.|+.-+..+|.+....... ..+ ...+..+|+.|.+... .++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777777776666543333222 222 3456667777766532 1223333333322 22332
Q ss_pred ---HHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCC--hhhHHHHHHHHHhCCCCCcHHhHHHH
Q 008022 252 ---HEASDLWNRMIREGFLPNVV--AYSTLIHGLCSNGS--MDEAVSVSYQMEENSCPPNVTTYSAL 311 (581)
Q Consensus 252 ---~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 311 (581)
+.+..+|+.+.+.|...+.. ....++........ ..++..+++.+.+.++++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23445555555545443322 22222222111111 22445555555555555444444433
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.67 E-value=6.8 Score=32.26 Aligned_cols=21 Identities=14% Similarity=-0.110 Sum_probs=9.3
Q ss_pred CHHhHHHHHHHHHccCCHHHH
Q 008022 515 DIISYTSLLWGICNSGGMQEA 535 (581)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A 535 (581)
|+..+..|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.66 E-value=9.3 Score=33.74 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHhhCCC---CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 008022 340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC---PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL 416 (581)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 416 (581)
..+...++..-...++++.+...+-++....- .++. +-..+++.+. .-++.+++.++..-...|+.||..+.+.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 33444444444445555555555555543310 0111 1111222222 23445555555555556666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 008022 417 LDGLLRVNRVKEAFELVTEIEKC 439 (581)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~ 439 (581)
+..+.+.+++.+|..+...|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666555555443
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=10 Score=33.57 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=70.2
Q ss_pred cCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH
Q 008022 229 RGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG---FLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV 305 (581)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 305 (581)
.|.+....+...++.......+++.++.++-+++... ..|+.. -.+.++.+ -.-++++++.++..-...|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 3445566666666766666778888888877776541 111111 11222222 234667888888777788888899
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008022 306 TTYSALIDGFAKAGNLLGASQIWNRMISN 334 (581)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (581)
.++..+|..+.+.+++.+|.++.-.+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999988888887776654
No 334
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.30 E-value=7.7 Score=36.55 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=27.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 008022 177 KEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVE 217 (581)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (581)
..+.++...+++..+...|.......++.....|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 35667777777777777776666666666666677766543
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.27 E-value=0.71 Score=23.27 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008022 32 VFISVINSYRRVGLAEQALKMFY 54 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~ 54 (581)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777888888888887765
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.23 E-value=8 Score=32.16 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHH
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG--TKLDAITFNIIIY 488 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 488 (581)
|.+..+..+.+.+...+++...++-.+.. +.|..+-..++..++-.|++++|..-++-.-... ..+....|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455666777788888888877766653 5566666677778888888888877776665531 1223444555544
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.21 E-value=2.7 Score=34.71 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=53.3
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDA 74 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~ 74 (581)
++.+.+.+..++++.+.+.-++..+. +......+++.++-.|+|++|..-++-+.+..++ +-...|..++.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 46778888888888888888877544 7777788888888899999888877777664432 445567777664
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.97 E-value=0.81 Score=26.77 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=12.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 008022 522 LLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 339
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=14 Score=31.75 Aligned_cols=168 Identities=11% Similarity=-0.013 Sum_probs=98.1
Q ss_pred hhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc-h
Q 008022 6 GEKCEIDGVQYLLQQMKVEGVS-CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS-M 83 (581)
Q Consensus 6 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 83 (581)
++....+.|+++-+.++..++. -++..|...+--.. ..+..+=+++++++...++ .+-.+|..--......|++. .
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCcccc
Confidence 3445556666666666665432 12333333322222 2346667778888887554 56666665555555566766 6
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc-cCCHH---------H
Q 008022 84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK-LGQVE---------E 153 (581)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~---------~ 153 (581)
-+.+.+.|.... ..+-.+|..--.++...+.++.-+....++.+.++. +..+|+.-.-.... .|-.+ -
T Consensus 132 ELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 132 ELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred hHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 777778887654 556677777777777778899989998998887665 44555532211111 12111 1
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHh
Q 008022 154 ARELAMRFGSGVSVYNALINGLCK 177 (581)
Q Consensus 154 a~~~~~~~~~~~~~~~~l~~~~~~ 177 (581)
+.+.+.-.|.+.++||-|...+..
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHh
Confidence 111222227888888877665543
No 340
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.73 E-value=22 Score=33.74 Aligned_cols=108 Identities=15% Similarity=0.014 Sum_probs=67.1
Q ss_pred HHHHccCChhHHHHHHHHHHHc---CCCCC-----cccHHHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCCH--
Q 008022 208 SSLCDVGNVETSLGILGQMFVR---GCNPN-----IHSFTSLLKGYLLGGRTHEASDLWNRMIR-------EGFLPNV-- 270 (581)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 270 (581)
..+.-.|++..|.+++...--. |...+ -..+|.+.-.+.+.|.+..+..+|....+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4455678899988887653221 21111 12235555556667777777777766553 3444321
Q ss_pred ---------HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022 271 ---------VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK 317 (581)
Q Consensus 271 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (581)
.+|| ..-.|...|++-.|.+.|...... +..++..|..+..+|..
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1233 334577889999999988887764 45688899999888864
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.56 E-value=7.1 Score=27.84 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+..+-++.+....+-|++.+....+++|.+.+|+..|.++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555555555666666666666666666666666665554
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.32 E-value=13 Score=30.48 Aligned_cols=87 Identities=16% Similarity=0.043 Sum_probs=38.8
Q ss_pred HHhhcCCChHHHHHHHHHHhhCCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 008022 383 KGLCGCGRVDWAMKLLDQMKQYECLPNITTYN-----ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR 457 (581)
Q Consensus 383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (581)
..+...+++++|...++..... |....+. .|.......|.+++|+.+++.....++. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3444555555555555544432 1212221 2233344455555555555554433221 1222223344555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 008022 458 AGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~ 474 (581)
.|+.++|+.-|++.+..
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555544
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.32 E-value=3.7 Score=36.49 Aligned_cols=91 Identities=13% Similarity=-0.019 Sum_probs=51.6
Q ss_pred HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH
Q 008022 382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV 461 (581)
Q Consensus 382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (581)
..-|.+.|.+++|+..|....... +.+.+++..-..+|.+...+..|..=....+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 455667777777777776665543 2266666666667777777766655555544332 11222333333343445566
Q ss_pred HHHHHHHHHHHHC
Q 008022 462 VEAFQLLGKMLIE 474 (581)
Q Consensus 462 ~~a~~~~~~~~~~ 474 (581)
.+|.+-++..+..
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 6666666666653
No 344
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.31 E-value=32 Score=35.11 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 008022 312 IDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKM 366 (581)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (581)
++.-...++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333345555555555555543321 112222333444444456666665555554
No 345
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.27 E-value=36 Score=35.66 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=34.0
Q ss_pred hHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHh
Q 008022 3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISV----INSYRRVGLAEQALKMFYRIRE 58 (581)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 58 (581)
..+....++++|..+-+.....++.....+...- +--+..+|++++|.+.|.++..
T Consensus 315 ~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 315 QDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 4556667788888777766554332111111111 2225678999999999998875
No 346
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.89 E-value=11 Score=31.96 Aligned_cols=119 Identities=9% Similarity=-0.084 Sum_probs=62.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHH
Q 008022 420 LLRVNRVKEAFELVTEIEKCGIQLNI-VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD-AITFNIIIYAYCKQGKVN 497 (581)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 497 (581)
|....++..|+..|.+.+.. .|+. .-|..-+.++.+..+++.+.+--.+.++. .|+ ......+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33445566676666665553 4544 33444555666667777766666666553 333 334445556666667777
Q ss_pred HHHHHHHHHhcC---CCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 498 NAIQLLDRIRGG---GEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 498 ~A~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
+|+..+.++... .+.+|....+..|..+-...=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 777777766331 223333344444544433333334444444443
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.74 E-value=0.85 Score=24.39 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=9.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 008022 522 LLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
++.++.+.|++++|.+.|++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3334444444444444444443
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.53 E-value=1.9 Score=25.26 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 008022 35 SVINSYRRVGLAEQALKMFYRIREF 59 (581)
Q Consensus 35 ~l~~~~~~~g~~~~A~~~~~~~~~~ 59 (581)
.+.++|...|+.+.|+++++.+...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4667777777777777777777753
No 349
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.24 E-value=22 Score=32.02 Aligned_cols=145 Identities=13% Similarity=0.046 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCC---cccHHHHHHHHHHHHhcCC--
Q 008022 392 DWAMKLLDQMKQYECLPNITTYNELLDGLLR--V----NRVKEAFELVTEIEKCGI---QLNIVTYNTILHGVCRAGM-- 460 (581)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 460 (581)
++...+++.+.+.|+..+..+|.+....... . .....+..+++.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3456677777887777666655443332222 1 234567888888887632 2334445444433 3333
Q ss_pred --HHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHH
Q 008022 461 --VVEAFQLLGKMLIEGTKLDAI--TFNIIIYAYCKQGK--VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQE 534 (581)
Q Consensus 461 --~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 534 (581)
.+.++.+|+.+.+.|...+.. ....++..+..... ..++.++++.+.+ .++++....|..++-...-.+..++
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHHhcCCchHH
Confidence 355677777777766654332 33333333222222 3467777777777 4677766667666554444443324
Q ss_pred HHHHH
Q 008022 535 AFIYL 539 (581)
Q Consensus 535 A~~~~ 539 (581)
...-+
T Consensus 236 ~~~~i 240 (297)
T PF13170_consen 236 IVEEI 240 (297)
T ss_pred HHHHH
Confidence 33333
No 350
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.18 E-value=26 Score=32.71 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=49.5
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCC---ChhhHHHHHHHhhcCCChHHHHHHHHHHhh
Q 008022 338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPP---NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ 403 (581)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 403 (581)
....++..++..+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577888889999999999999999887654222 344455556667778899999999888876
No 351
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=36 Score=34.29 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 008022 34 ISVINSYRRVGLAEQALKMFYRIR-EFGLKPTVKIYNHILD 73 (581)
Q Consensus 34 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~ 73 (581)
..+-..|...|++++|+++--... ...+.++...+..++.
T Consensus 63 L~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etiva 103 (929)
T KOG2062|consen 63 LLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVA 103 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHH
Confidence 445567888888888887655443 3344455555555443
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.85 E-value=21 Score=31.36 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 417 LDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM 471 (581)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 471 (581)
...|..+|.+.+|.++.+.....+ +.+...+..++..+...||--.+.+.++++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344444555555555555444432 334444444455555555444444444433
No 353
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.24 E-value=41 Score=34.16 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhC--CCcchHHHHHHHHHh
Q 008022 102 TYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFG--SGVSVYNALINGLCK 177 (581)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~l~~~~~~ 177 (581)
.....|..+...|++++|-...-.|... +...|...+..+...++......++-..+ .++.+|..++..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 3444455555555555555555555443 44444444444444444433333322221 233445555544444
No 354
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.09 E-value=28 Score=32.00 Aligned_cols=119 Identities=8% Similarity=-0.012 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 008022 427 KEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK---QGKVNNAIQLL 503 (581)
Q Consensus 427 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 503 (581)
+.-+.+++++++.. +.+......++..+.+..+.++..+.+++++... +-+...|..++..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666666653 4556666666677777777777777777777653 3355666665544433 22355555555
Q ss_pred HHHhcCC-----CC------CCC-----HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 008022 504 DRIRGGG-----EW------NPD-----IISYTSLLWGICNSGGMQEAFIYLQKMLNEGI 547 (581)
Q Consensus 504 ~~~~~~~-----~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 547 (581)
.++.... +. .|+ ...+..+...+...|..+.|+.+++-+++..+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 4443211 00 011 01223333344578888888888888877654
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.98 E-value=8.5 Score=33.42 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL 110 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (581)
.....-|++++..++|.+++.+.-+.-+..-+-.+.+...-|-.|.+.+++..+.++-....+..-..+...|..++..|
T Consensus 84 sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 84 SLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 34556688999999999998876655543333456667777778899999999999988888763233444577777666
Q ss_pred Hh-----cCChhHHHHHH
Q 008022 111 CK-----NNRVDGAYKLL 123 (581)
Q Consensus 111 ~~-----~~~~~~a~~~~ 123 (581)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 54 59999999887
No 356
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.76 E-value=30 Score=32.08 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022 30 EGVFISVINSYRRVGLAEQALKMFYRIREF--GLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD 94 (581)
Q Consensus 30 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (581)
...+..+...|...|+.+.|++.+.++... .....+..|..+|......|+|........+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356777888999999999999999886642 12234556777777778889988888877777654
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.72 E-value=12 Score=32.64 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHH----
Q 008022 70 HILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSI---- 145 (581)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 145 (581)
.-|++++..|+|.+++.+.-+--+..-+..+.+...=|-.|.+.+.+..+.++-....+.--.-+...|..+++.|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3478899999999988877666554212233455566777889999999999888776652222333466666555
Q ss_pred -HccCCHHHHHHHHHH
Q 008022 146 -CKLGQVEEARELAMR 160 (581)
Q Consensus 146 -~~~g~~~~a~~~~~~ 160 (581)
.-.|.+++|+++...
T Consensus 168 LlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVG 183 (309)
T ss_pred HhccccHHHHHHHHhc
Confidence 456999999999854
No 358
>PRK10941 hypothetical protein; Provisional
Probab=85.45 E-value=15 Score=32.40 Aligned_cols=75 Identities=11% Similarity=-0.032 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022 449 NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW 524 (581)
Q Consensus 449 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (581)
+.+-.+|.+.++++.|.++.+.++... +.++.-+..-+-.|.+.|.+..|..-++...+..+-.|+.......+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 344455667777777777777777653 334545555666677777777777777776664444444444444333
No 359
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=21 Score=34.90 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022 420 LLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA 499 (581)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 499 (581)
..+.|+.+.|.++..+.. +..-|..|.++....+++..|.+++.+... |..|+-.+...|+-+.-
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 345666666666544432 455677777777777777777777766654 33455566666666655
Q ss_pred HHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 500 IQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 500 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
..+-....+.+ ..|....+|...|+++++++++.+-
T Consensus 712 ~~la~~~~~~g-------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQG-------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhc-------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 55544444411 1223344567788888888776654
No 360
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.63 E-value=48 Score=33.49 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML 472 (581)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 472 (581)
....+.+...-...+......++..|.+.|-.+.|.++.+.+-..- ....-|..-+..+.++|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444333323344445556666666776666666666554431 122334444555566666655555555444
No 361
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.36 E-value=12 Score=26.42 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
-++.+-++.+....+-|++.+....+++|.+.+|+..|.++++.++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444555555555566666666666666666666666666665554
No 362
>PRK09687 putative lyase; Provisional
Probab=84.26 E-value=30 Score=30.91 Aligned_cols=137 Identities=15% Similarity=0.073 Sum_probs=69.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 008022 164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVG-NVETSLGILGQMFVRGCNPNIHSFTSLL 242 (581)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (581)
+..+....+.++.+.++ ..++..+-.+.+. +|...-...+.++...+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555555555554 3444444444442 23333333344444432 13344444444442 33555556666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 008022 243 KGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFA 316 (581)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (581)
.++.+.++. .+...+-...+.+ + .....+.++...|+. +|...+..+... .+|..+-...+.++.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666663 4555554444432 2 233556667777774 577777776653 235555555555543
No 363
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.94 E-value=0.34 Score=38.03 Aligned_cols=51 Identities=4% Similarity=0.129 Sum_probs=24.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 008022 39 SYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYS 89 (581)
Q Consensus 39 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 89 (581)
.+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333444555555555555544433445555555555555555555554444
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.66 E-value=41 Score=31.94 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=15.8
Q ss_pred HccCCHHHHHHHHHHHHHcC
Q 008022 527 CNSGGMQEAFIYLQKMLNEG 546 (581)
Q Consensus 527 ~~~g~~~~A~~~~~~~~~~~ 546 (581)
.+..++..|+++|+++.+.+
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 787 MHLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 45568889999999997754
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.56 E-value=27 Score=29.76 Aligned_cols=85 Identities=8% Similarity=-0.084 Sum_probs=47.2
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 008022 6 GEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMIN 85 (581)
Q Consensus 6 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (581)
....+++.|...|.+.+..++. ....|..-+..+.+..+++.+..=..+.++..+ ..+.....+-........++.|+
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~-N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-NLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-HHHHHHHHHHHHHHhhccccHHH
Confidence 3445666677766666655332 334555556666667777766666665555321 12223333344555566666776
Q ss_pred HHHHHHH
Q 008022 86 PIYSNMK 92 (581)
Q Consensus 86 ~~~~~~~ 92 (581)
..+.+..
T Consensus 99 ~~Lqra~ 105 (284)
T KOG4642|consen 99 KVLQRAY 105 (284)
T ss_pred HHHHHHH
Confidence 6666653
No 366
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.64 E-value=29 Score=29.47 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHhcCCCC--CC-C-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 008022 482 TFNIIIYAYCKQGKVN-------NAIQLLDRIRGGGEW--NP-D-IISYTSLLWGICNSGGMQEAFIYLQKMLNEG 546 (581)
Q Consensus 482 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~--~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (581)
.+..++..|...|+.+ .|.+.|.++.+.... .+ + ....-.++....+.|+.++|.+.|.+++..+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3455556666666633 355555555442221 11 2 2233345556677888888888888887654
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.58 E-value=2.7 Score=21.67 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
.++..+...|++++|...++...
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444333
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.41 E-value=20 Score=27.37 Aligned_cols=66 Identities=9% Similarity=0.119 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 443 LNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIE-GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
++..+-..+..++.+..+ ..+.+.+++++.+. ...........|.-++.+.++|++++++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444444432 34445555555542 1122233444455555566666666666665555
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.40 E-value=4.1 Score=27.38 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHH
Q 008022 492 KQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 538 (581)
...+.++|+..|.++.++..-.|+ ..++..++.+|...|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666653332222 22455566666666666666654
No 370
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.11 E-value=5.3 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
++-++.+.|++++|.+..+.+.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444444444444444444444
No 371
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.02 E-value=39 Score=29.84 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022 479 DAITFNIIIYAYCKQGKVNNAIQLLD 504 (581)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (581)
++.....++..|.+.|++.+|...|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44555556666666666666555443
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.33 E-value=3.4 Score=21.29 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.|..++..+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 567788888999999999999998876
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.28 E-value=18 Score=25.80 Aligned_cols=48 Identities=6% Similarity=0.029 Sum_probs=19.6
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008022 76 LAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNK 129 (581)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (581)
...|+|++|..+.+... .||...|.++-.. +.|--+.+..-+.++...
T Consensus 50 mNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 50 MNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34445555544443331 3444444433222 334444444444444433
No 374
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.23 E-value=11 Score=23.30 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=27.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 008022 520 TSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVR 559 (581)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 559 (581)
-.+..++.+.|++++|.++.+.+++ +.|+......|-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 3566788999999999999999998 5787655444443
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.93 E-value=6.8 Score=26.39 Aligned_cols=46 Identities=11% Similarity=-0.034 Sum_probs=22.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 008022 7 EKCEIDGVQYLLQQMKVEGVSCS--EGVFISVINSYRRVGLAEQALKM 52 (581)
Q Consensus 7 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 52 (581)
.+++-++|+..|...++.-..+. ..++..++++|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555422211 12334455555555555555443
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.90 E-value=1.9 Score=38.29 Aligned_cols=90 Identities=21% Similarity=0.069 Sum_probs=47.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-hHHHHHHHHHccCCHHHH
Q 008022 457 RAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII-SYTSLLWGICNSGGMQEA 535 (581)
Q Consensus 457 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A 535 (581)
..|.+++|++.+-..+..+ ++....|..-..++.+.+++..|++=+....+ ++||.. .|-.-..+-...|+|++|
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHHH
Confidence 3455666666666655543 34444455555555566666666666666555 445322 233333334445666666
Q ss_pred HHHHHHHHHcCCCCC
Q 008022 536 FIYLQKMLNEGICPN 550 (581)
Q Consensus 536 ~~~~~~~~~~~~~~~ 550 (581)
...+....+.++.+.
T Consensus 202 a~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHHhccccHH
Confidence 666666655544443
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.94 E-value=18 Score=25.71 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
++......|++++|.+.++++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444445555555555555443
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.81 E-value=24 Score=25.15 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 008022 461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540 (581)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (581)
.++|..+-+-+...+ .....+-..-+..+...|+|++|..+.+... .||...|..| +-.+.|..+++..-+.
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~AL--ce~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLAL--CEWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHH--HHHhhccHHHHHHHHH
Confidence 355555555554432 1111111122345677888888888776553 4787777665 3456777777777777
Q ss_pred HHHHcCCCCCHHh
Q 008022 541 KMLNEGICPNFAT 553 (581)
Q Consensus 541 ~~~~~~~~~~~~~ 553 (581)
++..+| .|....
T Consensus 93 rla~sg-~p~lq~ 104 (115)
T TIGR02508 93 RLAASG-DPRLQT 104 (115)
T ss_pred HHHhCC-CHHHHH
Confidence 776654 344333
No 379
>PF13934 ELYS: Nuclear pore complex assembly
Probab=76.61 E-value=23 Score=30.39 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=67.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022 37 INSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRV 116 (581)
Q Consensus 37 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (581)
+-.+...+++++|.+.+... ...+.-...++..+...|+...|..+++..... ..+......++.. ..++.+
T Consensus 85 g~W~LD~~~~~~A~~~L~~p-----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 85 GFWLLDHGDFEEALELLSHP-----SLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHhChHhHHHHHHHhCCC-----CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCH
Confidence 33456678888888777322 122233346788888889999999888775432 1222223333334 567888
Q ss_pred hHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhC
Q 008022 117 DGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFG 162 (581)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 162 (581)
.+|...-+...+.. ....+..++..+.....-......+-.+|
T Consensus 157 ~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~~~~~~~Ll~LP 199 (226)
T PF13934_consen 157 TEAFSFQRSYPDEL---RRRLFEQLLEHCLEECARSGRLDELLSLP 199 (226)
T ss_pred HHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhhhhHHHHHHhCC
Confidence 88888777665531 24566677766664432233344444443
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.99 E-value=27 Score=26.14 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+..+-++.+...++-|++.+...-+++|.+.+|+..|.++|+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666666666665
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.86 E-value=79 Score=30.56 Aligned_cols=182 Identities=13% Similarity=0.049 Sum_probs=123.0
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHH
Q 008022 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNT 380 (581)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 380 (581)
.+.|.....+++..+.....+.-++.+..++...| .+-..+..++++|... ..++-..+++++.+..+ .+...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 45677788889999998888999999999998865 4677888899999888 66788888888887653 34555556
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHH
Q 008022 381 FIKGLCGCGRVDWAMKLLDQMKQYECLPN-----ITTYNELLDGLLRVNRVKEAFELVTEIEKC-GIQLNIVTYNTILHG 454 (581)
Q Consensus 381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 454 (581)
|+..|.+ ++...+..+|.++...-++.. ...|..+... -..+.+..+.+...+.+. |..--...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 6666665 778888888888765432211 1133333221 135666677776666543 333445566666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
|....++.+|++++..+++.. ..|..+-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 777888888888888888775 44555555555433
No 382
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.37 E-value=67 Score=29.52 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 008022 393 WAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR---AGMVVEAFQLLG 469 (581)
Q Consensus 393 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 469 (581)
.-+.++++..+.+ +.+...+..++..+.+..+.++..+.|+++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3344555544443 2333444445555555555555555566555542 2344455544443332 113344444444
Q ss_pred HHHHC------CC------CcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022 470 KMLIE------GT------KLD-----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD 515 (581)
Q Consensus 470 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 515 (581)
+.+.. +. .++ ..++..+...+.++|..+.|..+++-+.+..-..|.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 43322 10 000 112333344455678888888888877773333453
No 383
>PRK10941 hypothetical protein; Provisional
Probab=75.11 E-value=50 Score=29.23 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHH
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG-ICPNFATWNVLVRS 560 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~ 560 (581)
.+.+-.+|.+.++++.|+.+.+.+.. +.| ++.-+..-+..|.+.|.+..|..=++..+++- -.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 35566789999999999999999998 667 56667778888999999999999999987642 23455555555555
Q ss_pred HHh
Q 008022 561 LFS 563 (581)
Q Consensus 561 ~~~ 563 (581)
+..
T Consensus 261 l~~ 263 (269)
T PRK10941 261 IEQ 263 (269)
T ss_pred Hhh
Confidence 544
No 384
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.86 E-value=1e+02 Score=31.27 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008022 32 VFISVINSYRRVGLAEQALKMFY 54 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~ 54 (581)
.|-..+..+.-+|.+++|.+++.
T Consensus 150 ~FW~~v~~lvlrG~~~~a~~lL~ 172 (566)
T PF07575_consen 150 DFWDYVQRLVLRGLFDQARQLLR 172 (566)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH-
T ss_pred hHHHHHHHHHHcCCHHHHHHHHH
Confidence 33346666777777888777773
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.84 E-value=28 Score=33.96 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 008022 248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQI 327 (581)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (581)
.|+...|...+.......+.........|...+.+.|-...|..++.+..... ...+-++..+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555554443222222233344444455555555555555444432 22334444555555555555555555
Q ss_pred HHHHHhC
Q 008022 328 WNRMISN 334 (581)
Q Consensus 328 ~~~~~~~ 334 (581)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 5555544
No 386
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.61 E-value=9 Score=36.11 Aligned_cols=101 Identities=13% Similarity=0.036 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022 417 LDGLLRVNRVKEAFELVTEIEKCGIQLNIVTY-NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK 495 (581)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 495 (581)
+..+...+.++.|..++.++++. .||...| ..-..++.+.+++..|..=+.++++.. +.-...|..-+.++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 33445556677777777777664 4443332 223355666677777766666666543 2223334444455666666
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHhHHHHH
Q 008022 496 VNNAIQLLDRIRGGGEWNPDIISYTSLL 523 (581)
Q Consensus 496 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 523 (581)
+.+|...|+.... +.|+..-....+
T Consensus 88 ~~~A~~~l~~~~~---l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKK---LAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhh---cCcCcHHHHHHH
Confidence 6666666666666 456544443333
No 387
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.49 E-value=1.1e+02 Score=31.34 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=76.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIV--TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV 496 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 496 (581)
++..-|+-++|..+.+++.... .|-.. -.-.+..+|+-.|+.....+++.-.... +..|..-...++-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 4455677778888888887643 22211 1223455677778877666666555543 344555555555666677888
Q ss_pred HHHHHHHHHHhcCCCCCCCHH--hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 497 NNAIQLLDRIRGGGEWNPDII--SYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 497 ~~A~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+....+.+-+.+.+ +|.+. +-..|+-+|.-.|. .+|+.+++.|..
T Consensus 588 ~~~~s~V~lLses~--N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESY--NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhc--ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 88888888888744 45444 33344445555554 688888888875
No 388
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.47 E-value=1.3e+02 Score=32.55 Aligned_cols=127 Identities=12% Similarity=0.029 Sum_probs=71.2
Q ss_pred cccHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH
Q 008022 442 QLNIVTYNTILHGVCRAGMVVE-AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT 520 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 520 (581)
.++...-...+.++...+..+. +...+..+.. .++...-...+.++...|..+.+...+..+.+ .++...-.
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~ 825 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQ 825 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHH
Confidence 3444444455555555554332 3344445443 34666666777777777776555444555554 34554445
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 521 SLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
..+.++...+. +++...+..+++ .|+...-...+.++.+-.....+...+..+++
T Consensus 826 ~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 826 GAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55666666654 456666666654 46666666777777664334456666655544
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.45 E-value=21 Score=25.37 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=33.5
Q ss_pred hhhcCChhHHHHHHHHHHH----cCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008022 5 LGEKCEIDGVQYLLQQMKV----EGVSC----SEGVFISVINSYRRVGLAEQALKMFYRIRE 58 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 58 (581)
..+.|++..|.+.+.++.. .+... -......+...+...|++++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467888888666655544 22221 123344456667778888888888877764
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.24 E-value=80 Score=29.86 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHhhcCCChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 008022 383 KGLCGCGRVDWAMKLLDQMKQYECLPNIT--TYNELLDGLL--RVNRVKEAFELVTEIEKC 439 (581)
Q Consensus 383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 439 (581)
......+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778899999999888775 444444 4445555554 356778888888887754
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.12 E-value=38 Score=31.96 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=40.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 008022 418 DGLLRVNRVKEAFELVTEIEKCGIQLNIV--TYNTILHGVC--RAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 474 (581)
..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999886 565554 4444545543 456788999999888764
No 392
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.71 E-value=60 Score=28.21 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=32.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhcCChhhHHHHHHHHH
Q 008022 247 LGGRTHEASDLWNRMIREGFLPNVV---AYSTLIHGLCSNGSMDEAVSVSYQME 297 (581)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (581)
+..++++|+.-|++.++...+.... +...++..+.+.+++++....+.++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3456777888888777763333333 34455666777777777777766654
No 393
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.42 E-value=39 Score=25.88 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=32.3
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 477 KLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 477 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.++..+-..+..++.++.+ ..+.+.+++.+.+.. .| +....-.|.-++.+.|+++.++++.+.+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~--~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA--HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc--CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444445555555555443 334455555554311 12 223334445555666666666666666655
No 394
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.38 E-value=29 Score=25.14 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 008022 44 GLAEQALKMFYRIREFGLKPTVKI-YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKL 122 (581)
Q Consensus 44 g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 122 (581)
...++|..+.+++...+. ..++ --.-+..+...|+|+.|+ . .-. ....||...|.++-. .+.|--+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~AL--l-~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEAL--L-LPQ-CHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHH--H-HHT-TS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHH--H-hcc-cCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 345555555555554322 1111 111123344556666651 1 111 112455554444332 255555555555
Q ss_pred HHHHhhC
Q 008022 123 LVEMGNK 129 (581)
Q Consensus 123 ~~~~~~~ 129 (581)
+.++...
T Consensus 92 l~rla~~ 98 (116)
T PF09477_consen 92 LTRLASS 98 (116)
T ss_dssp HHHHCT-
T ss_pred HHHHHhC
Confidence 5555444
No 395
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.08 E-value=42 Score=32.86 Aligned_cols=88 Identities=13% Similarity=0.085 Sum_probs=42.8
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHH
Q 008022 386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAF 465 (581)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 465 (581)
...|+...|.+.+............+....|...+.+.|-.-.|-.++.+..... ...+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3445555555555544333222222333444444455555555555555444432 233444445555555555666666
Q ss_pred HHHHHHHHC
Q 008022 466 QLLGKMLIE 474 (581)
Q Consensus 466 ~~~~~~~~~ 474 (581)
+.|+.+++.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 666555554
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.00 E-value=40 Score=25.36 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022 48 QALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD 94 (581)
Q Consensus 48 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (581)
+..+.++.+...+..|++.+....+++|.+.+++..|..+|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44455555555555566666666666666666666666666655543
No 397
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=71.78 E-value=77 Score=28.58 Aligned_cols=148 Identities=11% Similarity=-0.067 Sum_probs=64.0
Q ss_pred ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----c
Q 008022 352 QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG----CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR----V 423 (581)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 423 (581)
..+++..+...+......+. ......+...|.. ..+...|...|....+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 34566666666666655331 1222233333322 23455566666655544321 222223333332 2
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA-----G--MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK---- 492 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 492 (581)
.+..+|..++....+.|..+...+...+...|..- - +...|...+.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 25556666666666555332211122222222221 0 2224555555555543 33333444444432
Q ss_pred cCCHHHHHHHHHHHhc
Q 008022 493 QGKVNNAIQLLDRIRG 508 (581)
Q Consensus 493 ~g~~~~A~~~~~~~~~ 508 (581)
..++.+|..+|.+..+
T Consensus 204 ~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 204 PRDLKKAFRWYKKAAE 219 (292)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 2245555555555555
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.76 E-value=19 Score=31.52 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCC---CC-CCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 008022 484 NIIIYAYCKQGKVNNAIQLLDRIRGGG---EW-NPDIISYTSLLWGICNSGGMQEAFIYLQK 541 (581)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (581)
..++..|...|++++|.++|+.+...+ |. .+...+...+..++...|+.+..+.+-=+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566666666666666666654311 11 11233444455555555665555554433
No 399
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.65 E-value=34 Score=24.08 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=37.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 008022 18 LQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKP-TVKIYNHILDALLAENR 80 (581)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 80 (581)
++.-+..++. +......+...+...|++++|++.+-.+.+..... +...-..++..+...|.
T Consensus 11 l~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 11 LEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3444444443 77888888889999999999998888887654332 23334445554444443
No 400
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.42 E-value=39 Score=24.57 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 008022 461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540 (581)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (581)
.++|..+.+-+...+. ....+-..-+..+.+.|+|++|+. .-. ....||...|..| +-.+.|-.+++...+.
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl---~~~--~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL---LPQ--CHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH---HHT--TS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH---hcc--cCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 4555555555554431 111122222334555666666611 111 1123555555444 2345566666666666
Q ss_pred HHHHc
Q 008022 541 KMLNE 545 (581)
Q Consensus 541 ~~~~~ 545 (581)
++..+
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55443
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.12 E-value=17 Score=23.31 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008022 10 EIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE 58 (581)
Q Consensus 10 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 58 (581)
.++....+++.+... ..+..-...++.++...|++++|.+....+..
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555543 23555566677888888888888887777654
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.84 E-value=26 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKML 472 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 472 (581)
..-.++.++...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344455555555555555555444
No 403
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.15 E-value=2.5e+02 Score=33.46 Aligned_cols=63 Identities=16% Similarity=-0.019 Sum_probs=43.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 008022 305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN 370 (581)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (581)
..+|....+.....|.++.|...+-...+.+ -+..+-..+..+...|+...|+.++++.....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4567777777777888888877766665553 22344455666777888888888888776543
No 404
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=69.05 E-value=46 Score=25.50 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008022 17 LLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGL 61 (581)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 61 (581)
..+..++.|-.....++..++-.+...|+++.|+.+.+.+++.|.
T Consensus 35 ~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 35 WVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred HHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 344455555444556777778888888888888888888887765
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.93 E-value=22 Score=29.66 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=20.8
Q ss_pred CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 512 WNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 512 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
..|++..+..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666666666654
No 406
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.83 E-value=74 Score=27.21 Aligned_cols=19 Identities=5% Similarity=0.352 Sum_probs=11.5
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008022 421 LRVNRVKEAFELVTEIEKC 439 (581)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~ 439 (581)
...+++.+|+++|+++...
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666544
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.74 E-value=36 Score=23.62 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008022 16 YLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIR 57 (581)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 57 (581)
+++..+.++|+- +......+-.+--..|+.+.|.+++..+.
T Consensus 23 ~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 23 DVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV 63 (88)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc
Confidence 344444444432 33333333222223344555555555444
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=68.65 E-value=43 Score=25.48 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhccCCCChHHHHHH
Q 008022 534 EAFIYLQKMLNEGICPN-FATWNVLVRSLFSNLGHLGPVYILDD 576 (581)
Q Consensus 534 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (581)
++.++|+.|..+|+--. +..|......+...|++.+|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777766666544 34555566666666777777766654
No 409
>PRK12798 chemotaxis protein; Reviewed
Probab=67.84 E-value=1.1e+02 Score=28.86 Aligned_cols=229 Identities=14% Similarity=0.005 Sum_probs=133.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH-
Q 008022 342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL- 420 (581)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~- 420 (581)
.....+-.....|++.....++..-..- ..+..... -+.+|. .|+.+++.+.+..+.....++....+..|+.+-
T Consensus 83 Nv~Aa~iy~lSGGnP~vlr~L~~~d~~~--~~d~~L~~-g~laY~-~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l 158 (421)
T PRK12798 83 NVDAALIYLLSGGNPATLRKLLARDKLG--NFDQRLAD-GALAYL-SGRGREARKLLAGVAPEYLPAELGAYLALVQGNL 158 (421)
T ss_pred chhHHHhhHhcCCCHHHHHHHHHcCCCC--hhhHHHHH-HHHHHH-cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHH
Confidence 3334444445567776666555543221 12222222 233344 489999999999987776677777777777654
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHH-HHHHHHHHHHhcCCH
Q 008022 421 LRVNRVKEAFELVTEIEKC--GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG-TKLDAI-TFNIIIYAYCKQGKV 496 (581)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~ 496 (581)
....++..|+++|+...-. |--........-+......|+.+++..+-......- ..|=.. .+..+...+.+.++-
T Consensus 159 ~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~ 238 (421)
T PRK12798 159 MVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDE 238 (421)
T ss_pred hcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccc
Confidence 4567899999999988753 211223344455556678999999877766666541 122222 233344455555533
Q ss_pred HHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHh--ccCCCChH
Q 008022 497 NNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFS--NLGHLGPV 571 (581)
Q Consensus 497 ~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~g~~~~a~ 571 (581)
..-.. +..+... +.| ....|..+.+.-.-.|+.+-|.-.-+++....-..+ ......+..+... ..+.+++.
T Consensus 239 ~~~~~-l~~~ls~--~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al 315 (421)
T PRK12798 239 IRDAR-LVEILSF--MDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESAL 315 (421)
T ss_pred ccHHH-HHHHHHh--cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHH
Confidence 32222 4444431 334 355888888888899999999999988876532222 1222233333332 34566666
Q ss_pred HHHHHH
Q 008022 572 YILDDI 577 (581)
Q Consensus 572 ~~~~~~ 577 (581)
+.+..+
T Consensus 316 ~~L~~I 321 (421)
T PRK12798 316 EELSQI 321 (421)
T ss_pred HHHhcC
Confidence 665544
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.16 E-value=34 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 008022 168 YNALINGLCKEHKIEEAFWLLCEMVD 193 (581)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (581)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444555555554444443
No 411
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.99 E-value=67 Score=27.85 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR-VNRVKEAFELVTEIE 437 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 437 (581)
.++..+...+++++....++.+...+...+..-.+.+..+|-. .|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3455566667777777777777666555555555555555532 233444444444443
No 412
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.82 E-value=98 Score=27.88 Aligned_cols=166 Identities=12% Similarity=0.002 Sum_probs=104.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----
Q 008022 316 AKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ----NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG---- 387 (581)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 387 (581)
...+++..+...+......+ +......+...|.. ..+..+|..++......+. +.....+...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 35677888888888877643 23444444444443 3467889999997777653 3334445555544
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh---
Q 008022 388 CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVN-------RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR--- 457 (581)
Q Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 457 (581)
..+..+|...|+...+.|..+.......+...|..-. +...|...+..+...+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 4488999999999988875443223444444444421 3347888888888876 44444445544433
Q ss_pred -cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008022 458 -AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG 494 (581)
Q Consensus 458 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 494 (581)
..++++|...|.+..+.|. ......+. .+...|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 3478999999999988763 44444444 455545
No 413
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.34 E-value=42 Score=30.24 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHH
Q 008022 445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEG---TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYT 520 (581)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 520 (581)
...|.-=.+-|.+..++..|...|.+-++.. ...+...|+.-+.+-...|++..|+.=..++.. ++|+ ...|.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~---~~P~h~Ka~~ 157 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK---LKPTHLKAYI 157 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh---cCcchhhhhh
Confidence 3456666778889999999999999988763 223455677766677778999999999999988 6774 44555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 008022 521 SLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.=..++....++++|....++...
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhh
Confidence 556667778888888888877754
No 414
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.24 E-value=1.2e+02 Score=28.53 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=33.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH-ccCCHHHHHHHHHHHHh
Q 008022 207 ISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYL-LGGRTHEASDLWNRMIR 263 (581)
Q Consensus 207 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 263 (581)
+..+.+.|.+..|.++.+-+...+..-|+.....+|..|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455667777777777777766653335555555555543 45555555555555433
No 415
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.04 E-value=89 Score=27.11 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=15.3
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHH
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNT 380 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 380 (581)
+++...+.+++++....++++...+...+..-.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnL 41 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNL 41 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHH
Confidence 33444455555555555555555443333333333
No 416
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.84 E-value=84 Score=26.74 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHCCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 008022 462 VEAFQLLGKMLIEGTKL-----DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN 513 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 513 (581)
..|.+.|.+.......| .......++....+.|++++|.+.|.++....+..
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 45666666666542221 23345567788888999999999999998844433
No 417
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.16 E-value=47 Score=23.62 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhH
Q 008022 464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISY 519 (581)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 519 (581)
-.+.++++...+....+-....|.-.|++.|+.+.|.+-|+.-.. +-|...+|
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa---lFPES~~f 108 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA---LFPESGVF 108 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh---hCccchhH
Confidence 344444544443333333444555566666666666666665554 33544444
No 418
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=64.88 E-value=15 Score=19.67 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhc
Q 008022 496 VNNAIQLLDRIRG 508 (581)
Q Consensus 496 ~~~A~~~~~~~~~ 508 (581)
++.|..+|++...
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 419
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.16 E-value=1.1e+02 Score=27.62 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----H
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLDAITF-NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----I 516 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~ 516 (581)
..+......|++.||.+.|.+.+.+..+. |.+.|...+ ..++-.|....-..+-++..+.+.+++| .-+ .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg-DWeRrNRl 183 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG-DWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-ChhhhhhH
Confidence 34455566677777777777766655543 444444332 2233344444444455555555555333 222 1
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 517 ISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.+|..+ -+..-.++.+|-.+|-..+.
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 233332 23344566677666665543
No 420
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.52 E-value=69 Score=26.13 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCcccH--HH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 426 VKEAFELVTEIEKCGIQLNI--VT-----YNTILHGVCRAGMVVEAFQLLGKMLI 473 (581)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~--~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~ 473 (581)
.+.|+.+|+.+.+.-..|.. .. -...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 55666666666654222210 01 11223345556666666666666554
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.34 E-value=44 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=22.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.|++.++..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56667777777777777777777777777666
No 422
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.32 E-value=15 Score=28.82 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 16 YLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
++...+.+.|.++ ..-...++..+.+.+++-.|.++++.+...++..+..+....++.+...|=...
T Consensus 7 ~~~~~lk~~glr~-T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~ 73 (145)
T COG0735 7 DAIERLKEAGLRL-TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHR 73 (145)
T ss_pred HHHHHHHHcCCCc-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEE
Confidence 4455666777763 344566778888888889999999999998888888887778888888876543
No 423
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.89 E-value=1.9e+02 Score=29.73 Aligned_cols=61 Identities=15% Similarity=0.002 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC--HHhH-----HHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD--IISY-----TSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
++.+...+. .|+..+..+............|| ...| ..+...+...|+.++|.....+...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344444444 67777766555554332222233 2334 3556669999999999998887653
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.89 E-value=49 Score=23.02 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=6.0
Q ss_pred CChhHHHHHHHHHh
Q 008022 114 NRVDGAYKLLVEMG 127 (581)
Q Consensus 114 ~~~~~a~~~~~~~~ 127 (581)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 425
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.44 E-value=1.7e+02 Score=29.02 Aligned_cols=143 Identities=10% Similarity=0.032 Sum_probs=87.7
Q ss_pred cCChhHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hCCCCC------
Q 008022 8 KCEIDGVQYLLQQMKVEG-----------VSCSEGVFISVINSYRRVGLAEQALKMFYRIR-------EFGLKP------ 63 (581)
Q Consensus 8 ~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~------ 63 (581)
...+++|+..|...+... .|........+...+..+|+.+.|..+.++.+ .-.+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 455677888777666521 23466777888888999999887776655543 211111
Q ss_pred -------CHHHHHH---HHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHhhCC--
Q 008022 64 -------TVKIYNH---ILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALC-KNNRVDGAYKLLVEMGNKG-- 130 (581)
Q Consensus 64 -------~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~-- 130 (581)
|-.-|.+ -+..+.+.|-+..|+++-+.+.+....-|+.....+|..|+ +..+++-.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 1222222 24556778888888888888887764446666666776665 6677777777777765442
Q ss_pred -CCCCcchHHHHHHHHHccCC
Q 008022 131 -CAPDAVSYTTIVSSICKLGQ 150 (581)
Q Consensus 131 -~~~~~~~~~~l~~~~~~~g~ 150 (581)
.-|+-.--.+++..|.+...
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNE 431 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCC
Confidence 23443333445555555444
No 426
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=62.22 E-value=1.3e+02 Score=27.49 Aligned_cols=125 Identities=9% Similarity=0.016 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCH
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR------AGMVVEAFQLLGKMLIEGTKLDAI-TFNIIIYAYCKQGKV 496 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 496 (581)
+-++++..++......+ .|.+......+.++.. .-+|.....+|+-+.... |++. ++|. .-+.....-+
T Consensus 270 ~lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNR-AVAla~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNR-AVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehH-HHHHHHhhhH
Confidence 34788999999988887 5888888887777643 236788888898888754 4444 3443 3355566678
Q ss_pred HHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 008022 497 NNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATW 554 (581)
Q Consensus 497 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 554 (581)
+.++.+.+-+.....++--...+..-...+.+.|+.++|...|++.+.. .++...-
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L--a~~~aer 401 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL--ARNAAER 401 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh--cCChHHH
Confidence 8888888888874333322333455566788999999999999999874 5554443
No 427
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.14 E-value=2.2e+02 Score=30.32 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHhCCCCCChhhHHH-
Q 008022 32 VFISVINSYRRVGLAEQALKMFYRIREFG---LKPTVKIYNHILDALLAENRF--SMINPIYSNMKRDGMEPNVFTYNI- 105 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 105 (581)
-|..|+..|...|+.++|++++....... ...-...+..++..+.+.+.. +.++++-.............++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 45667777888888888888888776521 111122344455555555544 455555544444321111111111
Q ss_pred -----------HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc
Q 008022 106 -----------LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK 147 (581)
Q Consensus 106 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (581)
.+-.+......+-+...++.+....-.++..-++.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 222334556666677777777665545556666666666654
No 428
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.13 E-value=1.1e+02 Score=26.76 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=17.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHH
Q 008022 204 STIISSLCDVGNVETSLGILGQMFV 228 (581)
Q Consensus 204 ~~l~~~~~~~g~~~~a~~~~~~~~~ 228 (581)
..+...|...|.+....+++.++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777654
No 429
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.96 E-value=1.4e+02 Score=28.00 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=19.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHH
Q 008022 339 NVVAYTCMVKVLCQNNMFHQAHSLIEKM 366 (581)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 366 (581)
-..++-.+...+...|+.+.|.+++++.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556667778888888777777765
No 430
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.31 E-value=55 Score=23.07 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=17.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 478 LDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 478 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.|...-..+...+...|++++|++.+-.+.+
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555555666666666666666666666655
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=61.17 E-value=47 Score=26.07 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=45.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022 53 FYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRV 116 (581)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (581)
.+.+...|.++++.- ..+++.+...++.-.|.++++.+.+.+...+..|-...+..+...|-.
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344556676665543 567788888888899999999999987666666655667777777754
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.14 E-value=83 Score=25.72 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=12.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008022 418 DGLLRVNRVKEAFELVTEIEK 438 (581)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~ 438 (581)
-.|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345566666666666666554
No 433
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.22 E-value=1.3e+02 Score=26.89 Aligned_cols=116 Identities=13% Similarity=0.170 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHh-cCC-hhhHHHHHHHHHh-CCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 008022 250 RTHEASDLWNRMIR-EGFLPNVVAYSTLIHGLCS-NGS-MDEAVSVSYQMEE-NSCPPNVTTYSALIDGFAKAGNLLGAS 325 (581)
Q Consensus 250 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 325 (581)
.+.+|+.+|+.... ..+-.|..+...+++.... .+. ...-.++..-+.. .+..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555666653221 1234466666666666655 222 1222222222322 123556667777777777778887777
Q ss_pred HHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 008022 326 QIWNRMISN-GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEK 365 (581)
Q Consensus 326 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 365 (581)
++|+..... ++..|...|..+++.....|+..-...+..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777776655 4555777777777777777777666666554
No 434
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.73 E-value=24 Score=33.48 Aligned_cols=107 Identities=16% Similarity=0.030 Sum_probs=74.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022 381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG 459 (581)
Q Consensus 381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (581)
-+.-+...+.++.|..++.++++.. |+.. .|..-..++.+.+++..|+.=+..+++.. +--...|..=..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 3455667788999999999998875 5544 34444578888999999988777777753 223344444455667777
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK 492 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (581)
.+.+|...|+.... +.|+..-+...+.-|-.
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 88888888888877 46776666666655543
No 435
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=59.72 E-value=1.4e+02 Score=27.43 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCH----HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022 496 VNNAIQLLDRIRGGGEWNPDI----ISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF 562 (581)
Q Consensus 496 ~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (581)
.++...++..++. .-|+. ..|.++++..-..|.+++.+.+|++++..|..|=......++..+-
T Consensus 119 ~eei~~~L~~li~---~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIK---NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455556665555 23443 3566666667777777777777777777777776666555555554
No 436
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.49 E-value=94 Score=28.20 Aligned_cols=97 Identities=18% Similarity=0.052 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCG---IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIII 487 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 487 (581)
.+|.-=.+-|.+.+++..|...|.+-++.. ...+...|+.-..+-.-.|++..|+.-....+... +.....+..-+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhh
Confidence 356666777888999999999999887653 23345677777777777899999999888888764 44566777778
Q ss_pred HHHHhcCCHHHHHHHHHHHhc
Q 008022 488 YAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.++.....+.+|..+.+...+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 888889999999999888765
No 437
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.47 E-value=1.6e+02 Score=27.96 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 475 (581)
...|+.-|...|+..+|...++++--- .-.....+.+++.+..+.|+-...+.+++...+.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 346777788888888888887765422 12245667778888888888777777777766554
No 438
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.15 E-value=31 Score=29.21 Aligned_cols=52 Identities=15% Similarity=0.031 Sum_probs=32.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 456 CRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 456 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.+.++.+.+.+++.+.+..- +.....|..+...--+.|+++.|.+.|++..+
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 44566666666666666542 33455666666666666777777777766666
No 439
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=58.55 E-value=1.8e+02 Score=28.03 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=15.8
Q ss_pred HhcCCHHHHHHHHHHHhcCC
Q 008022 491 CKQGKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~ 510 (581)
....++..|++.|+++.+..
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 787 MHLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 34568999999999998744
No 440
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=58.17 E-value=2.4e+02 Score=29.43 Aligned_cols=51 Identities=18% Similarity=0.095 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHHHcCCcccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 423 VNRVKEAFELVTEIEKCGIQLNIV-TYNTILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
.++++.+..+|..+...| .-+.. .|...+..=...|+...++.+++.....
T Consensus 475 ~~nmd~~R~iWn~imty~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 475 LKNMDKAREIWNFIMTYG-GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred hhchhhhhHhhhccccCC-cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 456677777777666543 11222 3333333334446666666666665554
No 441
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=58.15 E-value=1.6e+02 Score=27.47 Aligned_cols=47 Identities=11% Similarity=0.214 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 008022 43 VGLAEQALKMFYRIRE-----FGLKPTVKIYNHILDALLAENRFSMINPIYS 89 (581)
Q Consensus 43 ~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 89 (581)
.++.+.|.+-+-...+ .+...+..++..++..|...++|+.--....
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~ 76 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIR 76 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 5666666654433321 2233444555566666666666655444333
No 442
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.99 E-value=2e+02 Score=28.51 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=58.9
Q ss_pred cCChhHHHHHHHHHhhCC--------C---CCCcchHHHHHHHHHccCCHHHHHHHHHHh--------C-----------
Q 008022 113 NNRVDGAYKLLVEMGNKG--------C---APDAVSYTTIVSSICKLGQVEEARELAMRF--------G----------- 162 (581)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~--------~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~----------- 162 (581)
...++++...|.-....- + +....+...+...+..+|+.+-+..++++. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 345677777776655431 1 112234445566777788887777765553 1
Q ss_pred ------CCcchHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-ccCChhHHHHHHHHH
Q 008022 163 ------SGVSVYNA---LINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLC-DVGNVETSLGILGQM 226 (581)
Q Consensus 163 ------~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 226 (581)
.+-..|.+ .++.+.+.|.+..|+++.+-+.+....-|+.....+|..|+ +..+++-..++++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11111222 23344456666666666655555543334444445554443 344455555555544
No 443
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.71 E-value=26 Score=18.12 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008022 45 LAEQALKMFYRIREFGLKPTVKIYNHIL 72 (581)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 72 (581)
+++.|..+|+++....+ .++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 44555555555554322 4444444443
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.21 E-value=40 Score=20.22 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 008022 525 GICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVR 559 (581)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 559 (581)
...+.|-..++...+++|.+.|+.-+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567777888888888888888888877776654
No 445
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.93 E-value=91 Score=26.54 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=60.8
Q ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 008022 441 IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT-KLDAITF--NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII 517 (581)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 517 (581)
+.+...-++.|+--|.-...+.+|-+.|.+-..-.. ..+..++ ..-+......|+.++|++....+.. .-+..|..
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~~ 100 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP-EILDTNRE 100 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh-HHHccchh
Confidence 455666666776666666666666666554433211 2244443 3345667889999999998887654 11223432
Q ss_pred hHHHHH----HHHHccCCHHHHHHHHHHHHH
Q 008022 518 SYTSLL----WGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 518 ~~~~l~----~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.+..|. --+.+.|..++|+++.+.-+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 222221 124678888888888877654
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.82 E-value=3.1e+02 Score=30.05 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC---C--hhhHHHH
Q 008022 32 VFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEP---N--VFTYNIL 106 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~l 106 (581)
....+..+|...|...+|+..|.++.. |+.. -+....++....-.+ + . ...|-.| . ...|..+
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~S-g~ge-~~aL~~lv~~~~p~~-~-------s--v~dG~t~s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALS-GFGE-GNALRKLVYFLLPKR-F-------S--VADGKTPSEELTALHYYLKV 989 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhh-cccc-HHHHHHHHHHhcCCC-C-------c--hhcCCCCCchHHHHHHHHHH
Confidence 334455567788888888888887764 2211 112222221110000 0 0 0112111 1 3356677
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCc----chHHHHHHHHHccCCHHHHHHHHHHhCCC---cchHHHHHHHHHhcC
Q 008022 107 LKALCKNNRVDGAYKLLVEMGNKGCAPDA----VSYTTIVSSICKLGQVEEARELAMRFGSG---VSVYNALINGLCKEH 179 (581)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~l~~~~~~~~ 179 (581)
++.+-+.+-.+.+.++-...++. ++++. .+++.+.......|.+-+|...+-+.|.. ..+...++..+..+|
T Consensus 990 ~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 990 VRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcc
Confidence 78887888888777776666554 22222 24566667777778777777766655432 223445555666666
Q ss_pred Chh
Q 008022 180 KIE 182 (581)
Q Consensus 180 ~~~ 182 (581)
+++
T Consensus 1069 ~l~ 1071 (1480)
T KOG4521|consen 1069 ELE 1071 (1480)
T ss_pred chH
Confidence 543
No 447
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.73 E-value=2.1e+02 Score=30.16 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=56.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 008022 42 RVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYK 121 (581)
Q Consensus 42 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 121 (581)
..|+.+.|++.-..+ .+..+|..+.......|+.+-|+-+|++.+. |+.|--.|.-.|+.++..+
T Consensus 655 e~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 445555554443322 3445556666555556665555555555442 2233333444555555544
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008022 122 LLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVD 193 (581)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (581)
+.+....++ |.. .......-.|+.++-.++++....-+..|... ..+|.-++|.++.++...
T Consensus 720 m~~iae~r~---D~~---~~~qnalYl~dv~ervkIl~n~g~~~laylta----~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIRN---DAT---GQFQNALYLGDVKERVKILENGGQLPLAYLTA----AAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhhh---hhH---HHHHHHHHhccHHHHHHHHHhcCcccHHHHHH----hhcCcHHHHHHHHHhhcc
Confidence 444333221 111 11111122345555555555443333333221 124555555555555544
No 448
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.49 E-value=1.4e+02 Score=25.87 Aligned_cols=57 Identities=9% Similarity=-0.047 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+..++...|++-++++.-.+++... +.+...|..-+.+.+..-+.++|..-|..+.+
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3344555677777777777777663 44666676667777777777777777777776
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.11 E-value=44 Score=20.04 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=20.5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008022 40 YRRVGLAEQALKMFYRIREFGLKPTVKIYNHILD 73 (581)
Q Consensus 40 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 73 (581)
..+.|-.+++..++++|.+.|+.-+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666666666666666666655554
No 450
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.34 E-value=11 Score=33.89 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=56.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHH
Q 008022 41 RRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNV-FTYNILLKALCKNNRVDGA 119 (581)
Q Consensus 41 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 119 (581)
...|.++.|++.|...+..++ +....|..-...+.+.+....|++=+......+ ||. .-|-.--.+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 356677777777777776554 555566666666777777777777666666553 322 2333333444456777777
Q ss_pred HHHHHHHhhCCCCCCc
Q 008022 120 YKLLVEMGNKGCAPDA 135 (581)
Q Consensus 120 ~~~~~~~~~~~~~~~~ 135 (581)
...+....+.+..+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 7777777666554433
No 451
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=53.71 E-value=1.8e+02 Score=26.60 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh------cCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHhcCCH
Q 008022 389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR------VNRVKEAFELVTEIEKCGIQLNI-VTYNTILHGVCRAGMV 461 (581)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 461 (581)
+-++++..++++....+. |........+.++.. .-++.....+|+.+.... |++ ++.|.-+ +..+..-+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHH-HHHHhhhH
Confidence 346778888888777663 666666666655532 236677777777777653 333 3444433 34455556
Q ss_pred HHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 462 VEAFQLLGKMLIEG-TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 462 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.++.+.+-+...+ +.--...+..-...+.+.|..++|...|++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 77788887777652 221222234446778889999999999999887
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.59 E-value=15 Score=27.84 Aligned_cols=33 Identities=27% Similarity=0.604 Sum_probs=24.3
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008022 526 ICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRS 560 (581)
Q Consensus 526 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 560 (581)
+...|.-.+|-.+|++|++.|.+||. |..|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 44566777899999999999988884 4455543
No 453
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=53.04 E-value=3.3e+02 Score=29.54 Aligned_cols=326 Identities=11% Similarity=0.048 Sum_probs=169.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH-------HHHHHHccCC---hhHHHHHHHHHHHcCCCCCcccHH
Q 008022 170 ALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYST-------IISSLCDVGN---VETSLGILGQMFVRGCNPNIHSFT 239 (581)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 239 (581)
++=.++.....+++|+..|+++... ++-....|.. ++.-....|+ +++|+.-|+.+... +.-+--|.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 556 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYL 556 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHH
Confidence 3446788888999999999998775 3333344433 2333334444 67788888777644 22333455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHh--------------------HHHHHHHHHh---cCChhhHHHHHHH
Q 008022 240 SLLKGYLLGGRTHEASDLWNRMIRE-GFLPNVVA--------------------YSTLIHGLCS---NGSMDEAVSVSYQ 295 (581)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--------------------~~~l~~~~~~---~~~~~~a~~~~~~ 295 (581)
.-.-+|-+.|++++-++.+.-..+. ...|-... +.-++-+... .-...+-.++++.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEI 636 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 5556677888888877777665554 22222111 1111111111 1112223444444
Q ss_pred HHhCC-------CCCcHHh-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 008022 296 MEENS-------CPPNVTT-----YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLI 363 (581)
Q Consensus 296 ~~~~~-------~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 363 (581)
+..+- +.+.+.+ +..++. .-.|...---++++++... +|..+......+.+..|.++-+.+..
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (932)
T PRK13184 637 LYHKQQATLFCQLDKTPLQFRSSKMELFLS--FWSGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFS 711 (932)
T ss_pred HHhhccCCceeeccCchhhhhhhhHHHHHH--HHhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44331 1111111 111221 2244555555666666554 35555666666678889988877776
Q ss_pred HHHhhC----CCCCCh--------hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCCHHHH
Q 008022 364 EKMAFE----NCPPNT--------VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITT--YNELLDGLLRVNRVKEA 429 (581)
Q Consensus 364 ~~~~~~----~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a 429 (581)
..+... ..+.+. ..|-.-+.+.....+++++.+.+... +|.... +..++.-....++.+..
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (932)
T PRK13184 712 DILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESI 786 (932)
T ss_pred HHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHH
Confidence 665432 111111 11222344555555666665543332 222222 22233333334555555
Q ss_pred HHHHHHHHHcCCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 430 FELVTEIEKCGIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEG-TKLDAITFNIIIYAYCKQGKVNNAIQLLDRI 506 (581)
Q Consensus 430 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (581)
..+.+.+.+...+.. .......+.+|.-..++++|-+++....... .......+...+.-++-.++-+-|...|...
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (932)
T PRK13184 787 IQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGC 866 (932)
T ss_pred HHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhc
Confidence 555555554321211 1233445677778889999999886654432 2223444444455556677888888888887
Q ss_pred hc
Q 008022 507 RG 508 (581)
Q Consensus 507 ~~ 508 (581)
.+
T Consensus 867 ~~ 868 (932)
T PRK13184 867 RE 868 (932)
T ss_pred cc
Confidence 75
No 454
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.93 E-value=1.8e+02 Score=26.38 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=31.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTK-LDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.-+..+.|+..+|.+.++.+.+.-.- .-..+...++.++....-+.+...++-+--+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444567777777777776654210 0112234566666666666666665555443
No 455
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.60 E-value=1.9e+02 Score=26.55 Aligned_cols=79 Identities=13% Similarity=-0.021 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhC-CC---CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 008022 48 QALKMFYRIREF-GL---KPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLL 123 (581)
Q Consensus 48 ~A~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 123 (581)
.|.+.|...... .. ..++..-..++....+.|+.+....+++.... ..+......++.+++...+.+...+++
T Consensus 148 ~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 148 EARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 445555555542 11 23445555555555555554443334333332 234555556666666666666666666
Q ss_pred HHHhhC
Q 008022 124 VEMGNK 129 (581)
Q Consensus 124 ~~~~~~ 129 (581)
+.+...
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 666554
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.04 E-value=1.1e+02 Score=26.79 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 449 NTILHGVCRAGMVVEAFQLLGKMLIE----G-TKLDAITFNIIIYAYCKQGKVNNAIQLLDRI 506 (581)
Q Consensus 449 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (581)
..+...|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+..+.+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566677777888877777777532 1 1223445566667777777777766655444
No 457
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.84 E-value=32 Score=25.62 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 008022 36 VINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS 82 (581)
Q Consensus 36 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (581)
++..+...+.+-.|.++++.+.+.++..+..+....++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444445555566666777766665556666556666666666544
No 458
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.75 E-value=86 Score=22.40 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=17.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008022 18 LQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYR 55 (581)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 55 (581)
++++...+....+..+..+.-.|.+.|+.+.|.+-|+.
T Consensus 60 ~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 60 LEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33333333333444444444444555555555544443
No 459
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=51.28 E-value=67 Score=20.99 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIY 88 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 88 (581)
....|..-...+...|++++|.++-....+ |.-.++.+.+..-..=...|...-.+.+|
T Consensus 5 ad~l~~~~F~~l~~~g~y~eAA~~AA~sP~-giLRt~~Ti~rFk~~p~~pGq~splL~YF 63 (66)
T PF13838_consen 5 ADDLYVQQFNELFSQGQYEEAAKVAANSPR-GILRTPETINRFKQVPAQPGQPSPLLQYF 63 (66)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHSGG-GTT-SHHHHHHHHTS---TTS--HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-chhcCHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 455677777888888999988887766554 55566666665544444444444444443
No 460
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.86 E-value=1.7e+02 Score=25.42 Aligned_cols=90 Identities=9% Similarity=-0.087 Sum_probs=58.2
Q ss_pred HhhhcCChhHHHHHHHHHHH------cCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008022 4 KLGEKCEIDGVQYLLQQMKV------EGVSC-----------SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVK 66 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~------~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 66 (581)
.+.+.|++.+|..-|+..+- ..-.| ....+....+++...|++-++++....+++..+ .++.
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~-~nvK 265 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP-GNVK 265 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-chHH
Confidence 35677888888877766442 00112 222344455666677777788877777776544 6677
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022 67 IYNHILDALLAENRFSMINPIYSNMKRD 94 (581)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (581)
+|-.-.++.+..-+..+|..-|...++.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 7777777777777777777777777755
No 461
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.83 E-value=44 Score=29.75 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCCCHH-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 008022 512 WNPDII-SYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATW 554 (581)
Q Consensus 512 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 554 (581)
+.||.. -|+.-|..-.+.||+++|+.+++++.+.|+.--..++
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344444 3457777777778888888888888777765444444
No 462
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.72 E-value=1.8e+02 Score=26.14 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=39.7
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHh----------cCChhHHHHHH
Q 008022 120 YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCK----------EHKIEEAFWLL 188 (581)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~ 188 (581)
.++|+.+...++.|.-.++.-+.-.+...=.+...+.+++.+-.++.-|..|+..|+. .|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3556666666666666666655555666666666666666664444445555544442 45655555554
No 463
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.61 E-value=96 Score=29.40 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH---------------HHHHHHHHHHhcCCHHHHHHHHHHH-
Q 008022 408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV---------------TYNTILHGVCRAGMVVEAFQLLGKM- 471 (581)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~~- 471 (581)
|+......+++.+...-+-.+..+.++.....+.+.+.. +...+++..+-.||+..|+++++.+
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred ------HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022 472 ------LIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 472 ------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
...-..-...++..++-+|.-.+++.+|++.|..+.
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.79 E-value=1.3e+02 Score=23.69 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCcchHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-hhHHHHH
Q 008022 51 KMFYRIREFGLKPTVKI--YNHILDALLAENRFSMINPIYSNMKRDGM-----EPNVFTYNILLKALCKNNR-VDGAYKL 122 (581)
Q Consensus 51 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~ 122 (581)
+....+.+.+..++..+ .+.++.-....+++...+.+++.+..... ..+...|..++.+...... --.+..+
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTL 102 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHH
Q ss_pred HHHHhhCCCCCCcchHHHHHHHHHc
Q 008022 123 LVEMGNKGCAPDAVSYTTIVSSICK 147 (581)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (581)
|..+.+.+.++++.-|..++.++.+
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc
No 465
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.62 E-value=28 Score=26.14 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 32 VFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
....++..+...+.+-.|.++++.+.+.++..+..+.-..+..+.+.|-...
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 3445566666666677788888888877777777766666777777765443
No 466
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=1.9e+02 Score=25.73 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLDAIT-FNIIIYAYCKQGKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (581)
..+..+...|++.++.+.+.+...+.... |.+.|... -..++..|....-.++-++..+.+.+++
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34555556666666666665555544433 33333221 1223333333334555555555555533
No 467
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.58 E-value=2.5e+02 Score=27.02 Aligned_cols=233 Identities=9% Similarity=-0.046 Sum_probs=113.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022 37 INSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRV 116 (581)
Q Consensus 37 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (581)
+.++...| +.+...+-...... ++...+.....++. .++-..+...+-.... .++..+....+.++...+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~-~~~~~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALL-AQEDALDLRSVLAVLQ---AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHh-ccCChHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCch
Confidence 55555566 45666665555322 33344443333332 2222232233322222 34555666777777766665
Q ss_pred hHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008022 117 DGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF--GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDR 194 (581)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (581)
.....+..-+ +. +++......+.++...+. + +...+... ..+..+....+.++...+..+ +...+..+..
T Consensus 117 ~a~~~L~~~L-~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-a~~~L~~al~- 188 (410)
T TIGR02270 117 QAEPWLEPLL-AA---SEPPGRAIGLAALGAHRH-D-PGPALEAALTHEDALVRAAALRALGELPRRL-SESTLRLYLR- 188 (410)
T ss_pred HHHHHHHHHh-cC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-chHHHHHHHc-
Confidence 5554444433 22 133444444444443331 1 12222222 444555556666666666543 3333334432
Q ss_pred CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 008022 195 GIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYS 274 (581)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (581)
.+|...-...+.+....|. +.|...+..... .++......+....... ..+++.+.+..+.+. +. +-.
T Consensus 189 --d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d---~~--vr~ 256 (410)
T TIGR02270 189 --DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVA-GGPDAQAWLRELLQA---AA--TRR 256 (410)
T ss_pred --CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhC-CchhHHHHHHHHhcC---hh--hHH
Confidence 2355555566667777777 556555554222 22333333333333322 333666766666654 22 555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHH
Q 008022 275 TLIHGLCSNGSMDEAVSVSYQME 297 (581)
Q Consensus 275 ~l~~~~~~~~~~~~a~~~~~~~~ 297 (581)
..+.++.+.|+...+--+...|.
T Consensus 257 ~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHHHcCCcchHHHHHHHhc
Confidence 66777788888776655555544
No 468
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=48.87 E-value=3.9e+02 Score=29.09 Aligned_cols=90 Identities=10% Similarity=-0.023 Sum_probs=58.0
Q ss_pred hHhhhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHH----HHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008022 3 EKLGEKCEIDGVQYLLQQMKVE--GVSCSEGVFISVI----NSYRRVGL---AEQALKMFYRIREFGLKPTVKIYNHILD 73 (581)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~----~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 73 (581)
+++...+.+++|...|+++... |-.-..++...+. .--...|+ +++|+..|+.+.. ++ ..+--|..-.-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 560 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GV-GAPLEYLGKAL 560 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CC-CCchHHHhHHH
Confidence 4677888999999999999874 2222333333332 22333444 6688888887754 22 22333444455
Q ss_pred HHHhcCCcchHHHHHHHHHhC
Q 008022 74 ALLAENRFSMINPIYSNMKRD 94 (581)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~ 94 (581)
.|.+.|++++-.+.+....+.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHh
Confidence 677889999888888887776
No 469
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=48.70 E-value=1.8e+02 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=13.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 008022 419 GLLRVNRVKEAFELVTEIEKCG 440 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~ 440 (581)
.+...|+++.|+++.+-+++.|
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcC
Confidence 3445566666666666666655
No 470
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.95 E-value=54 Score=29.24 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008022 448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTK 477 (581)
Q Consensus 448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 477 (581)
|+..|....+.||+++|+++++++.+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 471
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.89 E-value=80 Score=20.32 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=5.2
Q ss_pred cCCHHHHHHHHHHH
Q 008022 43 VGLAEQALKMFYRI 56 (581)
Q Consensus 43 ~g~~~~A~~~~~~~ 56 (581)
.|++=+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 34444444444433
No 472
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.61 E-value=2.9e+02 Score=26.66 Aligned_cols=152 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc---CC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------HHCCCCcCHHH
Q 008022 425 RVKEAFELVTEIEKC---GI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKM------------------LIEGTKLDAIT 482 (581)
Q Consensus 425 ~~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------~~~~~~~~~~~ 482 (581)
..++...+++..... ++ ..+......++..+ .|+...+..+++.+ .......+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCCCHHhH
Q 008022 483 FNIIIYAYCKQ---GKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSG-----GMQEAFIYLQKMLNEGICPNFATW 554 (581)
Q Consensus 483 ~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~ 554 (581)
...++.++.+. ++++.|+.++.++.+ .|..|....-..+..++-..| ...-|...++-...-|++.-....
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~-~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l 308 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLE-AGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIAL 308 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHH
Q ss_pred HHHHHHHHhccCCCChHHHHHHHhh
Q 008022 555 NVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 555 ~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
....-.++.+-+...+...++++++
T Consensus 309 ~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 309 AQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHH
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.11 E-value=2.7e+02 Score=26.28 Aligned_cols=64 Identities=16% Similarity=0.043 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008022 271 VAYSTLIHGLCSNGSMDEAVSVSYQMEENS--CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN 334 (581)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (581)
..+..+...|...|+++.|++.+.+.++-- .......|..+|..-...|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 346777778888888888888887755431 1123344555666666677777777776666553
No 474
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=45.03 E-value=4.5e+02 Score=28.73 Aligned_cols=261 Identities=12% Similarity=0.030 Sum_probs=146.2
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 008022 268 PNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMV 347 (581)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 347 (581)
+++.+-...+..+.+.+.. ++...+..+.+. ++...-...+.++.+.+........+..+... +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 4666666666666666653 344444455442 34444445555554433221122233333332 4555555566
Q ss_pred HHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 008022 348 KVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVK 427 (581)
Q Consensus 348 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 427 (581)
..+...+..+ ...+.. ... .++...-...+.++...+..+. + ..... .++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---V-AGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 6655443211 122222 222 3455555666666666554432 2 22222 356666666777777766543
Q ss_pred H-HHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 428 E-AFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRI 506 (581)
Q Consensus 428 ~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (581)
. +...+..+.. .++...-...+.++...|..+.+...+..++. .++..+-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 3455555554 45677777788888888887666555666664 3466666667788888776 4566666666
Q ss_pred hcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 008022 507 RGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSL 561 (581)
Q Consensus 507 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (581)
.+ .|+...-...+.++.+.+....+...+..+.+ .+|...-.....++
T Consensus 847 L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL 894 (897)
T PRK13800 847 LT----DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRAL 894 (897)
T ss_pred hc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 65 47776666777777775444577778877775 35655554444444
No 475
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=44.10 E-value=3.5e+02 Score=30.09 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-----
Q 008022 27 SCSEGVFISVINSYRRVGLAEQALKMFYRI-------REFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD----- 94 (581)
Q Consensus 27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 94 (581)
+.....|..+...+-+.|+.++|..+-... ...+...+...|..+.-.....++...|...+.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 345566777777777888888777654333 22222223334555555555556666666666655442
Q ss_pred C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008022 95 G--MEPNVFTYNILLKALCKNNRVDGAYKLLVEMGN 128 (581)
Q Consensus 95 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (581)
| .||...+++.+-..+...++++.|.+.++...+
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 233444445544444455677777777776654
No 476
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.67 E-value=72 Score=20.79 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEG 475 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 475 (581)
.++.++..++...-.++++..+.++...|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444444444444443
No 477
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.65 E-value=1.1e+02 Score=21.28 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008022 86 PIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGN 128 (581)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (581)
++|+.....|+..|+.+|..++..+.-+=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667677777777777666666666666666666644
No 478
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.05 E-value=2.6e+02 Score=25.34 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHh
Q 008022 70 HILDALLAENRFSMINPIYSNMKR 93 (581)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~ 93 (581)
..++.+...|+|..|++++.+..+
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334445555555555555555443
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.70 E-value=1.3e+02 Score=24.42 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022 70 HILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRV 116 (581)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (581)
.++..+...++.-.|.++++.+.+.+...+..|-..-+..+.+.|-.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444444444555556665555554444444433444444444443
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.52 E-value=1.5e+02 Score=24.11 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=24.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC
Q 008022 170 ALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGN 215 (581)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (581)
.++..+...++.-.|.++++.+.+.+...+..|....+..+.+.|-
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3344444444455566666666665555555555555555555553
No 481
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.31 E-value=92 Score=20.03 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=27.0
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH-----HhcCChhHHHHHH
Q 008022 75 LLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL-----CKNNRVDGAYKLL 123 (581)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 123 (581)
+...|++=+|-++++.+-.....+....+..+|+.. .+.|+...|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 445677777777777776543233444555555443 2557776666553
No 482
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.61 E-value=2e+02 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 465 FQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.++++.+.+.++.|....+..+.-.+.+.=.+.+.+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45666666677777777777777777777777777777777775
No 483
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=41.43 E-value=3.6e+02 Score=26.62 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCcchHHHHHHHHHhCCCCC
Q 008022 35 SVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILD--ALLAENRFSMINPIYSNMKRDGMEP 98 (581)
Q Consensus 35 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~ 98 (581)
..+++..+.|+.+.|..++.++.. ...+.......++. ......++..|.+.+........++
T Consensus 68 lAa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~ 132 (604)
T COG3107 68 LAARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQ 132 (604)
T ss_pred HHHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCH
Confidence 344555666666666666666654 33344444444432 2334455566666665554443333
No 484
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=41.37 E-value=3.7e+02 Score=26.76 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHH-HcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 426 VKEAFELVTEIE-KCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI 473 (581)
Q Consensus 426 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 473 (581)
.++...+++... +.|+..+......++.. ..|+...|...++++..
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 344555555443 44666666666555543 45778888888777754
No 485
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.20 E-value=79 Score=20.62 Aligned_cols=49 Identities=10% Similarity=0.198 Sum_probs=31.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 008022 408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR 457 (581)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (581)
|....++.++...++..-.++++..+.++.+.| ..+...|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 555666777777777777777888888777776 3455566555555554
No 486
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=41.00 E-value=88 Score=28.01 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChhHHHHHHHHHhhCC
Q 008022 62 KPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNI-LLKALCKNNRVDGAYKLLVEMGNKG 130 (581)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 130 (581)
..|+..|...+.-..+.|.+.....+|.++.+.. |.|+..|-. --.-+...++++.+..+|....+.+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3556666666655555566666666666666554 445554433 1222344566666666666655553
No 487
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=40.78 E-value=66 Score=17.87 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008022 32 VFISVINSYRRVGLAEQALKMFY 54 (581)
Q Consensus 32 ~~~~l~~~~~~~g~~~~A~~~~~ 54 (581)
.+..+.-.+...|++++|+.+|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455666677777777777744
No 488
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=2.9e+02 Score=25.35 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=32.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 454 GVCRAGMVVEAFQLLGKMLIE---GTKLDAITF--NIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 454 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
...+.++.++|.++++++... .-.|+...+ ...++++...||..++.+.+.....
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344556777777777777654 123444443 3344556667777777777766554
No 489
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.58 E-value=2.9e+02 Score=25.34 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=23.8
Q ss_pred hhcCCChHHHHHHHHHHhhC---CCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 385 LCGCGRVDWAMKLLDQMKQY---ECLPNITTYN--ELLDGLLRVNRVKEAFELVTEIEK 438 (581)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 438 (581)
..+.++.++|.++++++.+. .-.|+...|. ....++...|+..++.+++.+..+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444555555555555321 1123333332 223334445555555555555443
No 490
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.82 E-value=2e+02 Score=29.07 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=52.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHh---C----CCcchHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCcccHHHH
Q 008022 140 TIVSSICKLGQVEEARELAMRF---G----SGVSVYNALINGLCKEHKIE------EAFWLLCEMVDRGIDPNVITYSTI 206 (581)
Q Consensus 140 ~l~~~~~~~g~~~~a~~~~~~~---~----~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 206 (581)
+|+.+|...|++-.+.++++.+ + .-...+|..++...++|.++ .|.++++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7888888889988888888887 1 12345777888888888754 233333332 244577777777
Q ss_pred HHHHHccCChhHHHHHHHHHHH
Q 008022 207 ISSLCDVGNVETSLGILGQMFV 228 (581)
Q Consensus 207 ~~~~~~~g~~~~a~~~~~~~~~ 228 (581)
+.+-...-.-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6655443333333444444443
No 491
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.36 E-value=2.5e+02 Score=24.22 Aligned_cols=47 Identities=19% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 008022 197 DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGY 245 (581)
Q Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (581)
.|.+.....++..| ..+++++|.+++.++-+.|..|.. ..+.+.+.+
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 45666666666544 457788888888888888876543 344455544
No 492
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.86 E-value=60 Score=24.83 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=18.2
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022 112 KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS 143 (581)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (581)
..|.-..|..+|..|++.|.+||. |+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 445556667777777777766653 444443
No 493
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.56 E-value=2.7e+02 Score=24.05 Aligned_cols=91 Identities=11% Similarity=0.172 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCcCHHHHHHHH
Q 008022 420 LLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-G-----------TKLDAITFNIII 487 (581)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~ 487 (581)
|.+..+.+--.++.+-....+++.+..-+..++ +...||..+|+.-++.-... | -.|++.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334444333334444444445555555555544 45678888877777665533 1 134555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 008022 488 YAYCKQGKVNNAIQLLDRIRGGGEWNP 514 (581)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~~~~p 514 (581)
..|. .+++++|.+.+..+-+ .|..|
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~-lgysp 271 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWK-LGYSP 271 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHH-cCCCH
Confidence 5444 3577777777777766 44555
No 494
>PRK12798 chemotaxis protein; Reviewed
Probab=37.32 E-value=3.7e+02 Score=25.61 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCChhHHHHHHHHHh
Q 008022 318 AGNLLGASQIWNRMISNGCSPNVVAYTCMVKV-LCQNNMFHQAHSLIEKMA 367 (581)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~ 367 (581)
.|+..++.+.+..+.....++....+-.|+.+ .....++.+|+.+|+...
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 45555565555555544444444444444443 233445555666555544
No 495
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.96 E-value=2.1e+02 Score=22.55 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=34.4
Q ss_pred HHHcCCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 008022 436 IEKCGIQLNIVTYNTILHGVCRA-GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV 496 (581)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 496 (581)
+.+.|++++..=. .++..+... +..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444555444322 233333333 34667777777777766666667666666677666643
No 496
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.58 E-value=1.2e+02 Score=27.18 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=26.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNT-ILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
|+..|...+.-..+.|.+.+.-.++.++.+.. |.|...|-. ...-+...++++.+..++.+.++.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 33344433333333444444444444444432 333333321 111223344455555555544443
No 497
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=36.51 E-value=3.6e+02 Score=29.95 Aligned_cols=125 Identities=10% Similarity=-0.022 Sum_probs=65.2
Q ss_pred HHHHHHcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH-------hCCCCCChhhH
Q 008022 37 INSYRRVGLAEQALK------MFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMK-------RDGMEPNVFTY 103 (581)
Q Consensus 37 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~ 103 (581)
.......|.+.+|.+ ++...-..-.++....|..+...+-+.++.++|...-.... ..+.+.+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 444455666666666 55533322222556677888888888888888776543322 22212233445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCCC-cchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022 104 NILLKALCKNNRVDGAYKLLVEMGNK-----G-CAPD-AVSYTTIVSSICKLGQVEEARELAMRF 161 (581)
Q Consensus 104 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 161 (581)
..+.......++...|...+.+.... | ..|. ..+++.+-..+...++++.|.+.++.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555555666666666666655432 1 1222 223333333333445566665554443
No 498
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.14 E-value=2.9e+02 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhCCCC
Q 008022 378 FNTFIKGLCGCGRVDWAMKLLDQMKQYECL 407 (581)
Q Consensus 378 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 407 (581)
+..++--....|+++.|+++..-+++.|.+
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 444455567889999999999999887744
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.95 E-value=1.7e+02 Score=23.11 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022 35 SVINSYRRV-GLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR 80 (581)
Q Consensus 35 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (581)
.++..+... +.+-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 334444433 3455566666666555554455544444555555444
No 500
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.88 E-value=3.2e+02 Score=24.39 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhH-------HHHHHHHHhcCCHHHHHH
Q 008022 276 LIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTY-------SALIDGFAKAGNLLGASQ 326 (581)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~ 326 (581)
+.+...+.+++++|+..+.++...|+..+..+. ..+...|...|++....+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 445556677777777777777777766555443 233444555555444333
Done!