Query 008022
Match_columns 581
No_of_seqs 720 out of 2964
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 16:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.8E-42 1.3E-46 345.3 39.8 500 41-561 64-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.4E-42 2.5E-46 343.2 38.6 485 27-526 81-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-29 1.2E-33 236.5 46.6 381 171-565 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5E-29 1.7E-33 235.4 45.1 375 144-530 8-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 3E-28 1E-32 232.4 24.8 186 377-563 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 4.4E-28 1.5E-32 231.3 24.2 185 308-492 29-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 7.1E-26 2.4E-30 222.9 38.4 273 270-552 186-483 (514)
8 2gw1_A Mitochondrial precursor 100.0 3.8E-25 1.3E-29 217.7 39.7 453 29-516 5-482 (514)
9 3fp2_A TPR repeat-containing p 99.9 9.2E-25 3.2E-29 216.1 37.1 430 68-508 28-490 (537)
10 3fp2_A TPR repeat-containing p 99.9 1.9E-23 6.5E-28 206.7 40.1 430 29-475 24-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6.3E-28 201.8 38.0 374 162-571 23-445 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 2.5E-23 8.6E-28 200.8 36.5 357 118-508 10-409 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 2.4E-20 8.3E-25 174.1 38.5 326 201-561 4-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.8E-20 9.6E-25 173.7 37.6 331 164-527 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 9.2E-19 3.1E-23 170.1 47.2 353 134-545 38-432 (490)
16 2xm6_A Protein corresponding t 99.9 3.6E-18 1.2E-22 165.8 47.3 361 185-579 27-431 (490)
17 3hym_B Cell division cycle pro 99.9 7.2E-20 2.5E-24 168.7 33.2 283 234-561 21-314 (330)
18 1xi4_A Clathrin heavy chain; a 99.9 3.6E-17 1.2E-21 165.8 54.2 280 112-430 1088-1375(1630)
19 3hym_B Cell division cycle pro 99.9 5.6E-20 1.9E-24 169.4 31.7 272 302-579 19-298 (330)
20 1xi4_A Clathrin heavy chain; a 99.9 1.1E-16 3.9E-21 162.2 55.9 420 28-504 983-1440(1630)
21 2ooe_A Cleavage stimulation fa 99.9 2.2E-18 7.5E-23 169.2 41.7 428 88-545 2-492 (530)
22 2ooe_A Cleavage stimulation fa 99.9 3.1E-18 1E-22 168.2 41.7 414 134-579 12-491 (530)
23 1fch_A Peroxisomal targeting s 99.9 6.8E-20 2.3E-24 171.7 26.2 264 306-579 65-358 (368)
24 1fch_A Peroxisomal targeting s 99.8 2.3E-19 8E-24 168.0 24.5 307 209-543 34-357 (368)
25 4eqf_A PEX5-related protein; a 99.8 2.5E-19 8.4E-24 167.5 22.6 258 308-576 68-352 (365)
26 4eqf_A PEX5-related protein; a 99.8 8.1E-19 2.8E-23 164.0 25.1 265 273-542 68-353 (365)
27 3cv0_A Peroxisome targeting si 99.8 1.7E-18 5.8E-23 159.3 24.2 275 272-578 23-313 (327)
28 4g1t_A Interferon-induced prot 99.8 1.6E-17 5.3E-22 161.2 31.8 296 215-545 153-459 (472)
29 1b89_A Protein (clathrin heavy 99.8 1.1E-17 3.9E-22 151.6 28.4 239 42-317 15-253 (449)
30 3cv0_A Peroxisome targeting si 99.8 3.6E-18 1.2E-22 157.1 25.8 280 234-544 20-314 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 6.2E-18 2.1E-22 150.9 25.0 250 245-508 9-263 (291)
32 1b89_A Protein (clathrin heavy 99.8 2.3E-17 7.8E-22 149.7 28.4 283 6-326 14-303 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.8E-22 148.1 26.1 275 277-572 6-286 (291)
34 4g1t_A Interferon-induced prot 99.8 1.7E-16 5.8E-21 153.9 35.0 382 164-579 50-458 (472)
35 3e4b_A ALGK; tetratricopeptide 99.8 1.7E-16 5.9E-21 151.4 27.3 346 171-546 9-388 (452)
36 2pl2_A Hypothetical conserved 99.7 2.5E-16 8.7E-21 134.2 21.3 194 376-576 6-210 (217)
37 3e4b_A ALGK; tetratricopeptide 99.7 9.3E-16 3.2E-20 146.3 26.9 381 106-544 9-420 (452)
38 2pl2_A Hypothetical conserved 99.7 3.9E-16 1.3E-20 133.1 21.9 200 337-544 2-213 (217)
39 3uq3_A Heat shock protein STI1 99.7 1E-15 3.5E-20 135.2 25.0 225 305-545 5-236 (258)
40 3u4t_A TPR repeat-containing p 99.7 3.3E-15 1.1E-19 133.1 24.6 245 306-558 4-262 (272)
41 3uq3_A Heat shock protein STI1 99.7 2.5E-15 8.5E-20 132.7 23.2 223 272-508 7-235 (258)
42 3u4t_A TPR repeat-containing p 99.7 9.1E-15 3.1E-19 130.2 24.5 245 273-524 6-263 (272)
43 1ouv_A Conserved hypothetical 99.7 1.4E-13 4.9E-18 122.4 31.9 225 303-546 4-252 (273)
44 1ouv_A Conserved hypothetical 99.7 1.5E-13 5E-18 122.3 30.8 222 269-508 5-250 (273)
45 2ho1_A Type 4 fimbrial biogene 99.7 3.1E-14 1E-18 125.1 25.8 206 341-554 38-245 (252)
46 2h6f_A Protein farnesyltransfe 99.7 2E-14 6.8E-19 132.5 24.9 248 305-563 97-365 (382)
47 2h6f_A Protein farnesyltransfe 99.7 3.2E-14 1.1E-18 131.1 25.3 247 271-527 98-364 (382)
48 4e6h_A MRNA 3'-END-processing 99.7 8.3E-12 2.8E-16 122.9 43.6 458 11-508 48-569 (679)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.6E-15 2.6E-19 131.0 20.5 217 319-544 19-243 (275)
50 2q7f_A YRRB protein; TPR, prot 99.7 7.6E-15 2.6E-19 128.3 19.8 200 339-545 22-222 (243)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.9E-15 1.3E-19 132.9 17.1 152 5-160 15-169 (275)
52 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-13 4.6E-18 121.0 25.9 200 305-508 37-237 (252)
53 2vq2_A PILW, putative fimbrial 99.6 1E-13 3.4E-18 119.5 24.6 199 342-544 10-210 (225)
54 4e6h_A MRNA 3'-END-processing 99.6 8.9E-12 3.1E-16 122.7 40.9 448 81-561 48-584 (679)
55 2q7f_A YRRB protein; TPR, prot 99.6 1.7E-14 5.8E-19 126.0 19.7 211 304-522 22-233 (243)
56 3spa_A Mtrpol, DNA-directed RN 99.6 2.1E-16 7.1E-21 155.3 8.0 119 374-492 126-248 (1134)
57 2vq2_A PILW, putative fimbrial 99.6 2.6E-13 8.8E-18 116.9 26.2 203 303-508 6-210 (225)
58 3spa_A Mtrpol, DNA-directed RN 99.6 4.1E-16 1.4E-20 153.3 8.0 118 165-282 127-248 (1134)
59 3sf4_A G-protein-signaling mod 99.6 2.3E-14 7.9E-19 136.0 18.7 301 237-569 11-365 (406)
60 3vtx_A MAMA; tetratricopeptide 99.6 1.3E-13 4.5E-18 114.4 20.8 170 374-551 4-174 (184)
61 4a1s_A PINS, partner of inscut 99.6 1.2E-14 4.1E-19 138.1 16.0 94 273-367 51-153 (411)
62 3ulq_A Response regulator aspa 99.6 4.2E-13 1.4E-17 125.8 24.5 230 311-544 109-367 (383)
63 4a1s_A PINS, partner of inscut 99.6 4.6E-14 1.6E-18 134.1 17.8 279 235-544 48-371 (411)
64 3sf4_A G-protein-signaling mod 99.6 6.3E-14 2.2E-18 132.9 18.3 274 305-579 9-335 (406)
65 2ond_A Cleavage stimulation fa 99.6 3.1E-12 1E-16 115.7 28.5 219 322-545 33-270 (308)
66 3ro2_A PINS homolog, G-protein 99.6 6.5E-14 2.2E-18 129.1 17.4 133 447-579 185-331 (338)
67 2ond_A Cleavage stimulation fa 99.6 1.5E-12 5.2E-17 117.7 25.7 216 357-579 33-269 (308)
68 3vtx_A MAMA; tetratricopeptide 99.6 7.4E-13 2.5E-17 109.8 21.4 171 339-516 4-174 (184)
69 4abn_A Tetratricopeptide repea 99.6 9.7E-14 3.3E-18 133.3 18.1 214 320-542 83-318 (474)
70 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.7E-18 127.6 17.5 155 391-545 159-332 (338)
71 4abn_A Tetratricopeptide repea 99.5 2.7E-13 9.3E-18 130.2 19.7 212 286-504 84-316 (474)
72 3ulq_A Response regulator aspa 99.5 9.5E-13 3.2E-17 123.4 22.4 231 346-579 109-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.5 4E-13 1.4E-17 122.2 15.7 236 306-544 28-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-12 4.1E-17 119.0 16.9 239 340-579 27-306 (311)
75 4i17_A Hypothetical protein; T 99.5 1.1E-11 3.7E-16 106.8 21.9 206 338-557 5-219 (228)
76 4gyw_A UDP-N-acetylglucosamine 99.5 3.6E-12 1.2E-16 127.1 21.4 164 375-544 9-173 (723)
77 3q15_A PSP28, response regulat 99.5 1.3E-11 4.3E-16 115.4 23.5 230 311-544 107-364 (378)
78 3q15_A PSP28, response regulat 99.5 1.3E-11 4.6E-16 115.3 23.6 230 346-579 107-364 (378)
79 4gyw_A UDP-N-acetylglucosamine 99.4 5.1E-12 1.7E-16 126.0 19.3 165 340-508 9-173 (723)
80 3as5_A MAMA; tetratricopeptide 99.4 1.9E-11 6.6E-16 101.4 19.6 164 376-545 9-173 (186)
81 1hz4_A MALT regulatory protein 99.4 7.9E-11 2.7E-15 110.0 25.7 272 274-545 18-322 (373)
82 3as5_A MAMA; tetratricopeptide 99.4 1.3E-11 4.3E-16 102.5 17.7 163 411-579 9-172 (186)
83 4i17_A Hypothetical protein; T 99.4 5.9E-11 2E-15 102.1 20.9 207 302-522 4-220 (228)
84 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.6E-15 108.4 24.9 298 239-545 18-349 (373)
85 3edt_B KLC 2, kinesin light ch 99.4 8.8E-12 3E-16 111.5 14.5 229 351-580 12-281 (283)
86 3mv2_B Coatomer subunit epsilo 99.3 2.7E-09 9.1E-14 92.9 26.7 178 324-508 85-281 (310)
87 1qqe_A Vesicular transport pro 99.3 1.2E-10 4.2E-15 104.1 18.8 193 349-544 46-268 (292)
88 3edt_B KLC 2, kinesin light ch 99.3 4E-11 1.4E-15 107.2 14.3 226 316-544 12-280 (283)
89 3qky_A Outer membrane assembly 99.3 1.2E-10 4E-15 102.6 16.7 190 340-551 15-228 (261)
90 3mv2_B Coatomer subunit epsilo 99.3 3.2E-09 1.1E-13 92.5 24.8 187 359-554 85-289 (310)
91 3urz_A Uncharacterized protein 99.3 2.9E-10 9.8E-15 95.9 17.4 136 415-557 59-196 (208)
92 1qqe_A Vesicular transport pro 99.3 1.5E-10 5.1E-15 103.5 15.8 206 355-577 32-266 (292)
93 2pzi_A Probable serine/threoni 99.2 2.6E-10 9E-15 114.6 17.8 169 386-563 402-580 (681)
94 3urz_A Uncharacterized protein 99.2 7.3E-10 2.5E-14 93.4 17.8 138 379-523 58-197 (208)
95 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.7E-14 85.1 17.4 129 412-545 3-132 (136)
96 3qky_A Outer membrane assembly 99.2 5.4E-10 1.8E-14 98.3 17.2 188 302-510 12-225 (261)
97 4ga2_A E3 SUMO-protein ligase 99.2 1.3E-10 4.5E-15 91.9 11.9 140 419-565 6-148 (150)
98 4ga2_A E3 SUMO-protein ligase 99.2 7.8E-11 2.7E-15 93.2 10.0 145 381-531 3-149 (150)
99 2pzi_A Probable serine/threoni 99.2 3.1E-10 1.1E-14 114.0 16.2 173 351-531 402-583 (681)
100 2uy1_A Cleavage stimulation fa 99.2 3.8E-08 1.3E-12 94.2 29.7 379 7-438 6-412 (493)
101 2uy1_A Cleavage stimulation fa 99.2 1.6E-08 5.4E-13 96.9 26.6 105 147-264 6-118 (493)
102 3rjv_A Putative SEL1 repeat pr 99.2 2.9E-09 9.8E-14 89.9 18.7 176 358-546 4-198 (212)
103 2r5s_A Uncharacterized protein 99.2 4.6E-10 1.6E-14 91.8 13.4 158 413-578 9-171 (176)
104 3rjv_A Putative SEL1 repeat pr 99.1 7E-09 2.4E-13 87.5 19.8 173 392-579 3-196 (212)
105 3qou_A Protein YBBN; thioredox 99.1 1.4E-09 4.7E-14 96.8 16.2 164 408-579 115-283 (287)
106 3dra_A Protein farnesyltransfe 99.1 1.5E-08 5E-13 89.4 22.4 231 316-552 43-293 (306)
107 2fo7_A Synthetic consensus TPR 99.1 2.8E-09 9.6E-14 82.8 16.2 129 377-508 3-131 (136)
108 2r5s_A Uncharacterized protein 99.1 8E-10 2.7E-14 90.4 13.3 164 377-544 8-172 (176)
109 3dra_A Protein farnesyltransfe 99.1 8.7E-08 3E-12 84.5 26.4 239 278-523 40-300 (306)
110 3qou_A Protein YBBN; thioredox 99.1 1.5E-09 5.1E-14 96.6 15.3 169 372-544 114-283 (287)
111 2yhc_A BAMD, UPF0169 lipoprote 99.1 8.8E-09 3E-13 88.0 19.2 168 375-544 4-212 (225)
112 2yhc_A BAMD, UPF0169 lipoprote 99.1 2E-08 6.7E-13 85.8 19.8 182 31-230 5-214 (225)
113 2vsy_A XCC0866; transferase, g 99.1 5E-09 1.7E-13 103.6 17.7 152 353-508 2-156 (568)
114 2vsy_A XCC0866; transferase, g 99.0 3.4E-09 1.2E-13 104.8 15.9 152 388-545 2-157 (568)
115 3gyz_A Chaperone protein IPGC; 99.0 2.5E-09 8.7E-14 83.8 11.8 103 444-552 35-138 (151)
116 4gco_A Protein STI-1; structur 99.0 6E-09 2E-13 79.3 13.2 100 446-551 14-114 (126)
117 2ifu_A Gamma-SNAP; membrane fu 99.0 3.4E-09 1.2E-13 95.5 13.3 226 283-537 4-253 (307)
118 2qfc_A PLCR protein; TPR, HTH, 99.0 7.2E-08 2.5E-12 86.2 21.1 166 413-578 78-264 (293)
119 4gco_A Protein STI-1; structur 99.0 1.8E-08 6.2E-13 76.6 14.5 109 411-524 14-123 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.8E-08 2E-12 82.2 19.0 125 378-508 9-149 (213)
121 2ifu_A Gamma-SNAP; membrane fu 99.0 4.6E-09 1.6E-13 94.6 12.6 224 318-572 4-253 (307)
122 3u3w_A Transcriptional activat 98.9 6.6E-08 2.3E-12 86.5 19.2 164 381-544 81-265 (293)
123 2vgx_A Chaperone SYCD; alterna 98.9 5.8E-09 2E-13 82.1 10.6 98 444-545 20-118 (148)
124 2qfc_A PLCR protein; TPR, HTH, 98.9 1.6E-07 5.5E-12 83.9 20.2 168 377-544 77-265 (293)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.1E-07 3.8E-12 80.5 18.0 127 414-545 10-150 (213)
126 1a17_A Serine/threonine protei 98.9 5.9E-08 2E-12 78.3 15.6 128 411-543 14-144 (166)
127 3u3w_A Transcriptional activat 98.9 6.8E-07 2.3E-11 79.8 23.9 163 346-508 81-265 (293)
128 3q7a_A Farnesyltransferase alp 98.9 3E-07 1E-11 81.9 20.3 234 314-553 63-338 (349)
129 3gyz_A Chaperone protein IPGC; 98.9 4.2E-08 1.4E-12 76.9 13.4 104 409-517 35-138 (151)
130 2e2e_A Formate-dependent nitri 98.9 2.7E-08 9.2E-13 81.4 12.9 117 423-544 23-143 (177)
131 2vgx_A Chaperone SYCD; alterna 98.9 2.3E-08 7.8E-13 78.6 11.4 109 397-508 9-117 (148)
132 4gcn_A Protein STI-1; structur 98.9 4.5E-08 1.5E-12 74.6 12.5 105 446-556 9-121 (127)
133 4f3v_A ESX-1 secretion system 98.9 6.4E-08 2.2E-12 83.2 14.6 134 414-553 106-243 (282)
134 2vyi_A SGTA protein; chaperone 98.9 1.1E-07 3.8E-12 73.0 14.9 119 444-567 11-130 (131)
135 1a17_A Serine/threonine protei 98.8 7.6E-08 2.6E-12 77.7 14.5 129 445-578 13-144 (166)
136 2e2e_A Formate-dependent nitri 98.8 4.2E-08 1.4E-12 80.2 13.0 124 4-130 19-145 (177)
137 3upv_A Heat shock protein STI1 98.8 9E-08 3.1E-12 73.0 13.9 97 445-545 4-101 (126)
138 3q7a_A Farnesyltransferase alp 98.8 5E-06 1.7E-10 74.1 26.8 237 280-523 64-344 (349)
139 3gw4_A Uncharacterized protein 98.8 6.5E-08 2.2E-12 81.2 14.2 158 386-544 3-175 (203)
140 2lni_A Stress-induced-phosphop 98.8 9.7E-08 3.3E-12 73.6 13.9 117 443-565 14-132 (133)
141 1na0_A Designed protein CTPR3; 98.8 2E-07 6.9E-12 70.8 15.1 113 445-562 9-122 (125)
142 2xcb_A PCRH, regulatory protei 98.8 5.9E-08 2E-12 75.8 11.8 96 445-544 18-114 (142)
143 1na0_A Designed protein CTPR3; 98.8 2.6E-07 8.9E-12 70.2 15.3 114 410-528 9-123 (125)
144 2lni_A Stress-induced-phosphop 98.8 1.3E-07 4.6E-12 72.8 13.7 117 409-530 15-132 (133)
145 1p5q_A FKBP52, FK506-binding p 98.8 7.2E-08 2.5E-12 87.8 13.9 150 389-544 127-293 (336)
146 2vyi_A SGTA protein; chaperone 98.8 1.2E-07 4.2E-12 72.8 13.1 119 409-532 11-130 (131)
147 3dss_A Geranylgeranyl transfer 98.8 1.8E-06 6.1E-11 76.6 21.9 227 316-553 40-310 (331)
148 4f3v_A ESX-1 secretion system 98.8 1.5E-07 5.2E-12 80.8 14.5 194 317-519 18-244 (282)
149 1p5q_A FKBP52, FK506-binding p 98.8 1.7E-07 5.8E-12 85.3 15.8 133 374-508 146-293 (336)
150 3gw4_A Uncharacterized protein 98.8 9.3E-08 3.2E-12 80.2 13.1 158 421-579 3-175 (203)
151 2c2l_A CHIP, carboxy terminus 98.8 5.1E-08 1.7E-12 86.3 11.2 192 340-544 4-198 (281)
152 2c2l_A CHIP, carboxy terminus 98.7 4.3E-08 1.5E-12 86.8 10.6 99 29-129 3-101 (281)
153 2xcb_A PCRH, regulatory protei 98.7 1.3E-07 4.5E-12 73.8 11.5 98 409-508 17-114 (142)
154 2fbn_A 70 kDa peptidylprolyl i 98.7 2.8E-08 9.5E-13 83.0 7.4 126 412-542 40-183 (198)
155 1elw_A TPR1-domain of HOP; HOP 98.7 7.6E-07 2.6E-11 66.7 14.7 95 446-544 5-100 (118)
156 3upv_A Heat shock protein STI1 98.7 5.8E-07 2E-11 68.4 13.9 97 410-508 4-100 (126)
157 4gcn_A Protein STI-1; structur 98.7 4.6E-07 1.6E-11 68.9 13.2 108 411-522 9-122 (127)
158 2fbn_A 70 kDa peptidylprolyl i 98.7 4.1E-08 1.4E-12 81.9 8.0 153 419-577 13-183 (198)
159 1elw_A TPR1-domain of HOP; HOP 98.7 1.3E-06 4.5E-11 65.4 15.7 109 410-523 4-113 (118)
160 1elr_A TPR2A-domain of HOP; HO 98.7 2.5E-07 8.6E-12 71.0 11.8 113 446-561 5-122 (131)
161 3sz7_A HSC70 cochaperone (SGT) 98.7 3.2E-07 1.1E-11 73.7 12.8 96 411-508 12-107 (164)
162 3dss_A Geranylgeranyl transfer 98.7 1.9E-05 6.4E-10 70.1 24.7 221 282-508 41-303 (331)
163 1hxi_A PEX5, peroxisome target 98.7 2.2E-07 7.4E-12 70.0 10.8 91 450-544 22-113 (121)
164 3q49_B STIP1 homology and U bo 98.6 5.2E-07 1.8E-11 69.9 13.0 98 443-544 7-105 (137)
165 3sz7_A HSC70 cochaperone (SGT) 98.6 6.2E-07 2.1E-11 72.0 13.5 98 444-545 10-108 (164)
166 3q49_B STIP1 homology and U bo 98.6 1.1E-06 3.7E-11 68.1 12.9 99 408-508 7-105 (137)
167 2kck_A TPR repeat; tetratricop 98.6 6.1E-07 2.1E-11 66.5 11.0 97 447-544 8-105 (112)
168 2dba_A Smooth muscle cell asso 98.6 2.1E-06 7.2E-11 67.4 14.7 97 444-545 27-128 (148)
169 1elr_A TPR2A-domain of HOP; HO 98.6 7.8E-07 2.7E-11 68.2 11.9 111 411-525 5-121 (131)
170 2kck_A TPR repeat; tetratricop 98.5 1.8E-06 6.2E-11 63.9 12.9 98 409-508 5-105 (112)
171 2xev_A YBGF; tetratricopeptide 98.5 2.5E-06 8.7E-11 65.1 13.9 91 451-545 8-105 (129)
172 1hxi_A PEX5, peroxisome target 98.5 1.3E-06 4.3E-11 65.8 11.8 95 412-508 19-113 (121)
173 3rkv_A Putative peptidylprolyl 98.5 1.2E-06 4.3E-11 70.1 12.4 100 448-552 14-131 (162)
174 2dba_A Smooth muscle cell asso 98.5 4.6E-06 1.6E-10 65.4 15.2 109 409-523 27-140 (148)
175 4b4t_Q 26S proteasome regulato 98.5 4.3E-06 1.5E-10 79.6 16.6 197 312-508 11-244 (434)
176 3k9i_A BH0479 protein; putativ 98.4 5.3E-07 1.8E-11 67.5 7.7 85 458-545 3-90 (117)
177 1wao_1 Serine/threonine protei 98.4 7.3E-07 2.5E-11 85.3 10.3 117 419-540 15-134 (477)
178 3ro3_A PINS homolog, G-protein 98.4 1.9E-06 6.4E-11 69.0 11.2 133 412-544 11-157 (164)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.6E-06 5.6E-11 82.5 12.2 150 389-544 248-414 (457)
180 3k9i_A BH0479 protein; putativ 98.4 6E-07 2E-11 67.2 7.2 85 423-508 3-89 (117)
181 2hr2_A Hypothetical protein; a 98.4 4.1E-06 1.4E-10 64.7 11.8 98 447-544 13-130 (159)
182 3ro3_A PINS homolog, G-protein 98.4 1.1E-06 3.9E-11 70.3 9.3 135 445-579 9-157 (164)
183 2hr2_A Hypothetical protein; a 98.4 1.9E-06 6.5E-11 66.5 9.7 97 480-579 11-130 (159)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 6E-06 2E-10 78.6 15.2 133 374-508 267-414 (457)
185 2xev_A YBGF; tetratricopeptide 98.4 1.1E-05 3.7E-10 61.5 14.1 93 414-508 6-104 (129)
186 3rkv_A Putative peptidylprolyl 98.4 6.2E-06 2.1E-10 65.9 13.1 101 412-516 13-130 (162)
187 1ihg_A Cyclophilin 40; ppiase 98.4 2.9E-06 9.8E-11 78.1 12.5 88 479-571 272-361 (370)
188 1wao_1 Serine/threonine protei 98.4 1.4E-06 4.9E-11 83.3 10.5 120 3-125 14-135 (477)
189 1ihg_A Cyclophilin 40; ppiase 98.4 5.1E-06 1.8E-10 76.4 13.7 121 413-537 226-362 (370)
190 4b4t_Q 26S proteasome regulato 98.4 5.6E-05 1.9E-09 71.8 21.2 199 276-474 10-245 (434)
191 2l6j_A TPR repeat-containing p 98.3 1.2E-06 4E-11 64.9 7.4 94 479-577 3-104 (111)
192 1dce_A Protein (RAB geranylger 98.3 5.6E-05 1.9E-09 73.6 20.5 172 390-569 44-244 (567)
193 2if4_A ATFKBP42; FKBP-like, al 98.3 2.3E-06 7.9E-11 77.8 10.2 146 376-544 180-327 (338)
194 1zu2_A Mitochondrial import re 98.3 1.7E-06 5.7E-11 66.7 7.6 97 458-560 15-133 (158)
195 2if4_A ATFKBP42; FKBP-like, al 98.2 2.7E-06 9.1E-11 77.4 8.8 147 410-580 179-328 (338)
196 1klx_A Cysteine rich protein B 98.2 5.2E-05 1.8E-09 58.3 14.2 111 424-546 9-127 (138)
197 1dce_A Protein (RAB geranylger 98.2 7.3E-05 2.5E-09 72.8 18.4 173 355-534 44-244 (567)
198 2l6j_A TPR repeat-containing p 98.1 3.2E-06 1.1E-10 62.4 5.3 93 444-540 3-102 (111)
199 3n71_A Histone lysine methyltr 98.1 3.7E-05 1.3E-09 73.0 13.0 127 419-545 318-464 (490)
200 2kat_A Uncharacterized protein 98.1 1.4E-05 4.8E-10 59.4 8.0 63 445-508 19-81 (115)
201 1na3_A Designed protein CTPR2; 98.0 5.7E-05 2E-09 53.0 10.3 60 482-544 11-71 (91)
202 1zu2_A Mitochondrial import re 98.0 1.9E-05 6.4E-10 60.9 7.7 93 422-519 14-127 (158)
203 1klx_A Cysteine rich protein B 98.0 0.00036 1.2E-08 53.6 14.8 108 390-508 10-125 (138)
204 3n71_A Histone lysine methyltr 98.0 2.8E-05 9.5E-10 73.8 10.0 126 454-579 318-463 (490)
205 1na3_A Designed protein CTPR2; 98.0 7.2E-05 2.5E-09 52.5 9.9 83 444-530 8-91 (91)
206 2kat_A Uncharacterized protein 98.0 6.7E-05 2.3E-09 55.6 10.1 79 463-545 3-82 (115)
207 3ma5_A Tetratricopeptide repea 97.9 5.4E-05 1.8E-09 54.4 8.7 84 479-565 6-91 (100)
208 3ma5_A Tetratricopeptide repea 97.9 3.7E-05 1.2E-09 55.3 7.4 66 442-508 4-69 (100)
209 3lvg_A Clathrin heavy chain 1; 97.8 1.9E-07 6.4E-12 84.1 -7.1 425 29-502 53-534 (624)
210 3ly7_A Transcriptional activat 97.6 0.0084 2.9E-07 53.5 18.7 143 407-555 191-347 (372)
211 1pc2_A Mitochondria fission pr 97.5 0.0015 5E-08 49.8 10.6 80 462-544 15-99 (152)
212 3qww_A SET and MYND domain-con 97.4 0.00056 1.9E-08 63.7 9.5 88 457-544 310-410 (433)
213 3bee_A Putative YFRE protein; 97.4 0.0014 4.9E-08 45.7 9.4 64 478-544 4-71 (93)
214 3ly7_A Transcriptional activat 97.4 0.0039 1.3E-07 55.6 14.2 74 442-520 274-347 (372)
215 2kc7_A BFR218_protein; tetratr 97.4 0.00049 1.7E-08 49.1 7.1 56 452-508 7-63 (99)
216 3bee_A Putative YFRE protein; 97.3 0.0049 1.7E-07 43.0 11.4 67 442-509 3-72 (93)
217 3qwp_A SET and MYND domain-con 97.3 0.0026 8.8E-08 59.4 12.9 93 452-544 294-399 (429)
218 1pc2_A Mitochondria fission pr 97.2 0.0037 1.3E-07 47.5 9.8 85 426-515 14-103 (152)
219 3u64_A Protein TP_0956; tetrat 97.1 0.043 1.5E-06 46.9 16.9 83 461-548 179-272 (301)
220 3lvg_A Clathrin heavy chain 1; 97.1 6.1E-05 2.1E-09 68.4 -0.4 265 64-360 53-324 (624)
221 2kc7_A BFR218_protein; tetratr 97.1 0.0043 1.5E-07 44.0 9.5 58 3-61 8-66 (99)
222 3qww_A SET and MYND domain-con 97.0 0.0023 7.9E-08 59.6 9.4 86 423-508 311-410 (433)
223 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0065 2.2E-07 43.6 9.3 66 479-544 4-74 (104)
224 4ady_A RPN2, 26S proteasome re 96.9 0.45 1.5E-05 48.4 35.3 151 350-508 500-657 (963)
225 3qwp_A SET and MYND domain-con 96.9 0.0048 1.6E-07 57.6 10.0 92 417-508 294-399 (429)
226 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0082 2.8E-07 43.0 9.1 68 28-95 3-76 (104)
227 3mkq_A Coatomer beta'-subunit; 96.5 0.083 2.8E-06 54.6 17.6 45 211-261 663-707 (814)
228 1nzn_A CGI-135 protein, fissio 96.5 0.058 2E-06 39.4 11.2 88 458-550 14-106 (126)
229 4ady_A RPN2, 26S proteasome re 96.4 0.99 3.4E-05 46.0 38.0 272 209-490 383-671 (963)
230 1nzn_A CGI-135 protein, fissio 96.4 0.027 9.3E-07 41.1 9.0 87 424-515 15-106 (126)
231 3mkq_B Coatomer subunit alpha; 96.3 0.18 6.1E-06 39.5 13.8 130 382-542 12-141 (177)
232 4h7y_A Dual specificity protei 96.2 0.051 1.7E-06 40.7 9.5 117 442-562 10-139 (161)
233 3mkq_A Coatomer beta'-subunit; 96.2 0.045 1.5E-06 56.6 13.0 112 41-190 663-774 (814)
234 1wy6_A Hypothetical protein ST 95.9 0.32 1.1E-05 35.6 15.7 56 452-508 98-153 (172)
235 4h7y_A Dual specificity protei 95.9 0.19 6.6E-06 37.7 11.4 51 424-475 74-124 (161)
236 3mkq_B Coatomer subunit alpha; 95.9 0.45 1.6E-05 37.2 16.4 102 349-471 14-115 (177)
237 3u64_A Protein TP_0956; tetrat 95.9 0.064 2.2E-06 45.8 10.0 88 10-97 178-272 (301)
238 1wy6_A Hypothetical protein ST 95.7 0.4 1.4E-05 35.1 15.0 140 386-548 18-157 (172)
239 2ff4_A Probable regulatory pro 95.1 0.62 2.1E-05 42.8 14.8 70 483-555 174-249 (388)
240 4gns_B Protein CSD3, chitin bi 95.0 0.18 6.3E-06 50.1 11.4 52 488-542 345-397 (754)
241 4b4t_P 26S proteasome regulato 94.8 2.7 9.3E-05 39.3 19.8 50 284-333 30-84 (445)
242 3o48_A Mitochondria fission 1 94.6 0.96 3.3E-05 33.2 11.5 67 442-508 37-106 (134)
243 4b4t_P 26S proteasome regulato 93.9 2.5 8.6E-05 39.6 16.1 51 44-94 30-85 (445)
244 1qsa_A Protein (soluble lytic 93.9 5.2 0.00018 39.1 34.7 200 284-504 228-437 (618)
245 3o48_A Mitochondria fission 1 93.9 0.83 2.8E-05 33.5 9.8 73 475-552 35-112 (134)
246 4gns_B Protein CSD3, chitin bi 93.8 0.49 1.7E-05 47.1 11.5 54 453-507 345-398 (754)
247 1y8m_A FIS1; mitochondria, unk 93.5 1.7 5.9E-05 32.4 11.3 66 443-508 37-105 (144)
248 1y8m_A FIS1; mitochondria, unk 93.4 1.8 6.1E-05 32.3 12.9 69 477-550 36-109 (144)
249 3ffl_A Anaphase-promoting comp 93.4 0.45 1.6E-05 36.5 8.2 114 2-128 27-150 (167)
250 4fhn_B Nucleoporin NUP120; pro 93.4 1.1 3.8E-05 47.9 14.3 145 33-182 815-988 (1139)
251 3ffl_A Anaphase-promoting comp 92.3 1.6 5.6E-05 33.5 9.9 27 481-507 123-149 (167)
252 4fhn_B Nucleoporin NUP120; pro 92.2 7.8 0.00027 41.6 18.8 126 446-574 900-1043(1139)
253 1v54_E Cytochrome C oxidase po 92.0 0.93 3.2E-05 31.2 7.2 78 31-109 9-88 (109)
254 3txn_A 26S proteasome regulato 91.6 7.8 0.00027 35.3 20.7 244 305-552 19-290 (394)
255 2ff4_A Probable regulatory pro 91.5 1.7 5.7E-05 39.9 11.2 67 415-482 176-247 (388)
256 2wpv_A GET4, UPF0363 protein Y 90.6 8.2 0.00028 33.7 16.8 187 11-227 13-215 (312)
257 1zbp_A Hypothetical protein VP 90.5 1.1 3.6E-05 37.8 7.9 117 2-129 4-129 (273)
258 1zbp_A Hypothetical protein VP 89.9 1.1 3.6E-05 37.8 7.4 116 419-544 6-128 (273)
259 3lpz_A GET4 (YOR164C homolog); 88.8 12 0.0004 33.0 20.0 114 30-158 35-159 (336)
260 2y69_E Cytochrome C oxidase su 88.4 2.4 8.3E-05 31.0 7.2 59 84-143 72-130 (152)
261 4b4t_R RPN7, 26S proteasome re 88.3 3.5 0.00012 38.4 10.7 97 412-508 133-236 (429)
262 2wpv_A GET4, UPF0363 protein Y 86.9 15 0.00052 32.1 19.3 81 443-543 132-215 (312)
263 1v54_E Cytochrome C oxidase po 85.6 7 0.00024 27.0 9.5 44 394-437 29-72 (109)
264 2p58_C Putative type III secre 85.3 5.5 0.00019 27.3 7.1 76 44-129 21-98 (116)
265 3lpz_A GET4 (YOR164C homolog); 84.8 20 0.00069 31.6 21.4 82 442-543 133-214 (336)
266 2p58_C Putative type III secre 83.5 8.8 0.0003 26.4 8.1 77 460-546 22-99 (116)
267 2uwj_G Type III export protein 83.2 8.2 0.00028 26.5 7.3 77 460-546 21-98 (115)
268 2uwj_G Type III export protein 82.6 5.1 0.00018 27.4 6.2 50 74-129 48-97 (115)
269 2y69_E Cytochrome C oxidase su 82.2 13 0.00044 27.3 9.5 45 394-438 72-116 (152)
270 1bpo_A Protein (clathrin); cla 82.1 16 0.00055 33.6 11.1 102 21-124 352-453 (494)
271 4b4t_R RPN7, 26S proteasome re 81.7 9.2 0.00032 35.6 10.2 119 11-129 110-237 (429)
272 1qsa_A Protein (soluble lytic 79.8 48 0.0016 32.5 33.7 51 347-400 388-438 (618)
273 3ltm_A Alpha-REP4; protein eng 77.7 26 0.0009 28.3 18.4 112 28-151 31-142 (211)
274 3ltj_A Alpharep-4; protein eng 74.6 31 0.0011 27.6 19.2 112 28-151 26-137 (201)
275 3esl_A Checkpoint serine/threo 73.6 32 0.0011 27.6 9.4 83 431-514 58-148 (202)
276 3esl_A Checkpoint serine/threo 72.8 17 0.00058 29.1 7.7 60 493-553 92-152 (202)
277 3ltm_A Alpha-REP4; protein eng 67.0 48 0.0016 26.7 19.3 140 409-565 63-202 (211)
278 3txn_A 26S proteasome regulato 64.1 86 0.0029 28.5 26.3 57 206-262 105-166 (394)
279 2d2s_A Exocyst complex compone 59.8 55 0.0019 27.2 8.8 29 99-127 90-118 (235)
280 4a1g_A Mitotic checkpoint seri 55.7 65 0.0022 24.4 9.3 50 499-549 84-134 (152)
281 4b4t_S RPN3, 26S proteasome re 54.9 1.3E+02 0.0045 28.5 11.2 68 27-94 228-299 (523)
282 2d2s_A Exocyst complex compone 52.8 45 0.0015 27.7 7.1 86 72-160 25-116 (235)
283 2wvi_A Mitotic checkpoint seri 50.8 83 0.0029 24.2 9.1 45 464-508 79-124 (164)
284 2ijq_A Hypothetical protein; s 49.9 51 0.0017 25.3 6.4 57 37-93 39-103 (161)
285 3mwm_A ZUR, putative metal upt 48.1 22 0.00076 26.5 4.2 61 22-83 6-66 (139)
286 2xig_A Ferric uptake regulatio 47.9 67 0.0023 24.3 7.0 46 35-80 31-76 (150)
287 2fe3_A Peroxide operon regulat 47.4 70 0.0024 24.0 7.0 38 42-79 33-70 (145)
288 4b4t_S RPN3, 26S proteasome re 45.9 1.6E+02 0.0054 28.0 10.2 65 65-129 231-299 (523)
289 4a1g_A Mitotic checkpoint seri 45.4 98 0.0033 23.5 9.5 30 414-443 105-134 (152)
290 2o03_A Probable zinc uptake re 45.4 23 0.0008 26.0 4.0 51 33-83 13-63 (131)
291 1wdy_A 2-5A-dependent ribonucl 43.5 1.5E+02 0.005 24.9 12.5 6 317-322 228-233 (285)
292 4gq2_M Nucleoporin NUP120; bet 42.5 2.1E+02 0.0071 30.0 11.8 90 451-545 816-926 (950)
293 2wvi_A Mitotic checkpoint seri 42.4 1.2E+02 0.0039 23.5 9.1 71 62-135 60-131 (164)
294 2ijq_A Hypothetical protein; s 42.4 87 0.003 24.0 6.6 54 75-128 42-103 (161)
295 1mzb_A Ferric uptake regulatio 41.9 31 0.001 25.6 4.2 63 20-83 8-71 (136)
296 2xig_A Ferric uptake regulatio 41.5 30 0.001 26.2 4.1 45 2-46 33-77 (150)
297 3bu8_A Telomeric repeat-bindin 41.4 1.4E+02 0.0047 24.2 7.6 19 39-57 123-141 (235)
298 3eyy_A Putative iron uptake re 40.0 55 0.0019 24.6 5.4 43 37-80 25-67 (145)
299 1oyz_A Hypothetical protein YI 39.9 1.7E+02 0.0058 24.7 22.9 122 408-544 140-262 (280)
300 1mzb_A Ferric uptake regulatio 39.8 62 0.0021 23.9 5.6 61 56-117 9-70 (136)
301 3eiq_C Programmed cell death p 39.1 98 0.0034 27.7 7.5 21 36-56 60-80 (358)
302 3eiq_C Programmed cell death p 38.8 2.1E+02 0.0073 25.5 11.8 64 414-478 221-286 (358)
303 4ets_A Ferric uptake regulatio 38.5 51 0.0017 25.4 5.0 58 58-116 26-85 (162)
304 2fe3_A Peroxide operon regulat 38.5 32 0.0011 25.9 3.8 44 2-45 28-71 (145)
305 3jxi_A Vanilloid receptor-rela 38.4 57 0.0019 27.3 6.0 18 244-261 231-248 (260)
306 2w57_A Ferric uptake regulatio 37.9 34 0.0012 25.9 4.0 64 19-83 6-70 (150)
307 3kea_A K1L; tropism, ANK repea 36.3 2E+02 0.0068 24.4 11.8 16 39-54 37-52 (285)
308 3bge_A Predicted ATPase; struc 36.2 1.6E+02 0.0056 23.4 8.4 62 33-95 7-77 (201)
309 3eyy_A Putative iron uptake re 36.2 35 0.0012 25.7 3.7 44 2-46 25-68 (145)
310 3kae_A CDC27, possible protein 36.0 1.5E+02 0.0052 23.0 8.8 26 483-508 117-142 (242)
311 3ubw_A 14-3-3E, 14-3-3 protein 35.9 2E+02 0.0067 24.2 10.8 57 345-401 36-93 (261)
312 3eu9_A Huntingtin-interacting 35.8 1.7E+02 0.0059 23.6 9.9 13 41-53 17-29 (240)
313 2w57_A Ferric uptake regulatio 35.2 68 0.0023 24.2 5.3 62 55-117 7-69 (150)
314 4ets_A Ferric uptake regulatio 34.8 34 0.0012 26.3 3.5 72 11-83 13-87 (162)
315 3ltj_A Alpharep-4; protein eng 34.6 1.7E+02 0.0057 23.0 18.7 81 63-151 26-106 (201)
316 2fu4_A Ferric uptake regulatio 34.0 52 0.0018 21.5 4.0 63 19-82 6-69 (83)
317 1ya0_A SMG-7 transcript varian 33.5 2.6E+02 0.009 26.4 9.9 79 447-528 154-232 (497)
318 4gq2_M Nucleoporin NUP120; bet 33.5 3.6E+02 0.012 28.2 11.9 131 170-318 815-949 (950)
319 2zu6_B Programmed cell death p 32.4 2.3E+02 0.0078 24.7 8.6 224 271-497 4-254 (307)
320 4aez_C MAD3, mitotic spindle c 32.3 2.1E+02 0.0071 23.4 8.9 52 427-478 131-183 (223)
321 3hra_A Ankyrin repeat family p 32.2 1.8E+02 0.0062 22.7 10.0 12 147-158 81-92 (201)
322 1bpo_A Protein (clathrin); cla 31.0 2.1E+02 0.0073 26.6 8.3 111 423-539 342-452 (494)
323 3f3f_C Nucleoporin NUP85; stru 29.9 1.2E+02 0.0039 29.1 6.7 81 4-86 490-570 (570)
324 3e3v_A Regulatory protein RECX 29.1 2.1E+02 0.007 22.4 9.5 49 428-477 51-99 (177)
325 3mwm_A ZUR, putative metal upt 28.0 52 0.0018 24.5 3.4 49 69-117 17-65 (139)
326 2ion_A PDCD4, programmed cell 28.0 2E+02 0.0067 21.8 7.9 58 447-508 11-73 (152)
327 2ion_A PDCD4, programmed cell 27.9 1.9E+02 0.0063 21.9 6.5 24 414-437 13-36 (152)
328 3pvs_A Replication-associated 27.5 3.8E+02 0.013 24.9 13.7 48 390-439 166-221 (447)
329 2cwy_A Hypothetical protein TT 27.5 1.4E+02 0.0049 20.3 5.2 52 40-93 11-67 (94)
330 3jxi_A Vanilloid receptor-rela 27.1 1.5E+02 0.005 24.7 6.7 22 277-298 229-250 (260)
331 3ubw_A 14-3-3E, 14-3-3 protein 27.0 2.8E+02 0.0097 23.3 10.4 62 375-436 31-93 (261)
332 1wdy_A 2-5A-dependent ribonucl 27.0 2.7E+02 0.0093 23.1 13.3 47 318-364 192-240 (285)
333 3uzd_A 14-3-3 protein gamma; s 26.6 2.8E+02 0.0096 23.1 10.2 56 346-401 10-66 (248)
334 4aez_C MAD3, mitotic spindle c 26.2 2.7E+02 0.0092 22.8 8.3 46 463-508 132-178 (223)
335 2w2u_A Hypothetical P60 katani 26.2 1.2E+02 0.0042 20.0 4.6 17 527-543 30-46 (83)
336 1wgl_A TOLL-interacting protei 25.7 1.2E+02 0.004 18.5 4.5 17 178-194 36-52 (59)
337 3hra_A Ankyrin repeat family p 25.4 2.4E+02 0.0082 21.9 9.5 15 40-54 12-26 (201)
338 2o03_A Probable zinc uptake re 24.9 1E+02 0.0035 22.5 4.5 47 170-216 15-61 (131)
339 2qx5_A Nucleoporin NIC96; mRNA 24.7 5.2E+02 0.018 25.6 20.2 341 205-577 157-564 (661)
340 3bqo_A Telomeric repeat-bindin 24.6 69 0.0023 25.4 3.5 21 73-93 125-145 (211)
341 1ug3_A EIF4GI, eukaryotic prot 24.5 3.7E+02 0.013 23.8 10.1 22 170-191 16-37 (339)
342 3iqu_A 14-3-3 protein sigma; s 24.5 3E+02 0.01 22.7 9.1 57 345-401 13-70 (236)
343 2nsz_A Programmed cell death p 24.3 2.1E+02 0.0071 20.8 7.8 23 415-437 12-34 (129)
344 3kea_A K1L; tropism, ANK repea 24.2 3.3E+02 0.011 23.0 12.1 18 72-89 35-52 (285)
345 2v6y_A AAA family ATPase, P60 23.7 1.4E+02 0.0049 19.6 4.6 14 528-541 23-36 (83)
346 2keb_A DNA polymerase subunit 23.6 1.8E+02 0.0062 19.9 6.8 31 429-459 28-58 (101)
347 2f6m_A Suppressor protein STP2 23.6 1.4E+02 0.0048 18.6 4.4 40 414-454 6-45 (65)
348 3pvs_A Replication-associated 23.6 4.5E+02 0.015 24.4 13.6 54 422-475 267-325 (447)
349 2br9_A 14-3-3E, 14-3-3 protein 23.0 3.2E+02 0.011 22.6 9.5 36 346-381 11-46 (234)
350 2b7e_A PRE-mRNA processing pro 22.6 99 0.0034 18.8 3.2 29 182-210 3-31 (59)
351 1oai_A Nuclear RNA export fact 22.3 73 0.0025 19.4 2.6 24 493-516 33-56 (59)
352 2yru_A Steroid receptor RNA ac 22.1 2.2E+02 0.0075 20.4 5.5 22 73-94 69-90 (118)
353 2nsz_A Programmed cell death p 21.8 2.4E+02 0.0081 20.6 9.2 61 447-508 9-71 (129)
354 2r9g_A AAA ATPase, central reg 21.2 3.2E+02 0.011 21.9 9.7 63 33-97 14-85 (204)
355 4fke_A Aminopeptidase N; zinc 21.1 7.1E+02 0.024 25.9 18.8 30 199-228 830-859 (909)
356 1k1a_A B-cell lymphoma 3-encod 20.7 3.3E+02 0.011 21.9 11.6 15 112-126 18-32 (241)
357 1oyz_A Hypothetical protein YI 20.6 3.8E+02 0.013 22.4 24.0 113 28-150 35-157 (280)
358 3eu9_A Huntingtin-interacting 20.6 3.3E+02 0.011 21.8 10.5 8 112-119 18-25 (240)
359 2crb_A Nuclear receptor bindin 20.5 1.8E+02 0.0061 19.7 4.3 25 483-507 18-42 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-42 Score=345.33 Aligned_cols=500 Identities=13% Similarity=0.010 Sum_probs=399.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 008022 41 RRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120 (581)
Q Consensus 41 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 120 (581)
...|.+..+...+..+.. +++..|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 345555555555554432 67888999999999999999999999999864 567788888999999999999999
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-CCC-------------------cchHHHHHHHHHhcCC
Q 008022 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-GSG-------------------VSVYNALINGLCKEHK 180 (581)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-------------------~~~~~~l~~~~~~~~~ 180 (581)
.+|+.+... +++..++..++.+|.+.|++++|.++|++. +.. ..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999988653 568888999999999999999999999965 433 6789999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHH--HH-HHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHH
Q 008022 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSL--GI-LGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDL 257 (581)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (581)
+++|.++|+++.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+...+++.++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999886422 4445555554444333222211 11 33444433333455566667888899999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008022 258 WNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCS 337 (581)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (581)
|+++.+. +++..++..++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.... +
T Consensus 295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 9998876 5788999999999999999999999999998765 4577889999999999999999999999998654 3
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 008022 338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELL 417 (581)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 417 (581)
.+..++..++..|.+.|++++|..+|+++.... +.+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..++
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 478889999999999999999999999998764 5678899999999999999999999999998765 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHH
Q 008022 418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLD--AITFNIIIYAYC 491 (581)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~ 491 (581)
.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++++++.+. +..|+ ..+|..++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999998874 567889999999999999999999999999876 55666 789999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHH
Q 008022 492 KQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSL 561 (581)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 561 (581)
+.|++++|++.++++.+ ..| +..+|..++.+|...|++++|.++|+++++. .|+ ...+..+..+|
T Consensus 528 ~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLL---LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHH---HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99999999999999987 345 7889999999999999999999999999884 555 44555444433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-42 Score=343.21 Aligned_cols=485 Identities=12% Similarity=0.026 Sum_probs=416.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022 27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106 (581)
Q Consensus 27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (581)
.++...|..++..|.+.|++++|+.+|+++.... |+..++..++.++.+.|++++|..+|+.+... +++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 3577889999999999999999999999998643 67788999999999999999999999998654 6889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhC---------------CCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcch
Q 008022 107 LKALCKNNRVDGAYKLLVEMGNK---------------GCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSV 167 (581)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~ 167 (581)
+.+|.+.|++++|.++|+++... +.+++..+|..++.+|.+.|++++|++.|+++ |.+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999953322 22335778999999999999999999999998 566667
Q ss_pred HHHHHHHHHhcCChhHHHH--H-HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 008022 168 YNALINGLCKEHKIEEAFW--L-LCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKG 244 (581)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (581)
+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..++..++..
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 7777665554433332221 1 444554444445566777788899999999999999998876 5789999999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 008022 245 YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGA 324 (581)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (581)
|.+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..++..+.+.. +.+..++..++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999987533 77789999999999999999999999998653 66889999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC
Q 008022 325 SQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY 404 (581)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 404 (581)
.++|+++.+..+ .+..++..++.++.+.|++++|..+|+++...+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999987643 367799999999999999999999999998875 678899999999999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 008022 405 ECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL 478 (581)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 478 (581)
. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 5 457889999999999999999999999999876 55676 7899999999999999999999999999875 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHH
Q 008022 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGI 526 (581)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 526 (581)
+..+|..++.+|.+.|++++|.+.++++.+ +.| +...+..+..+|
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLA---ISPNEIMASDLLKRAL 594 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCChHHHHHHHHHH
Confidence 889999999999999999999999999998 567 566676666554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.5e-29 Score=236.54 Aligned_cols=381 Identities=15% Similarity=0.085 Sum_probs=312.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCC
Q 008022 171 LINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGR 250 (581)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (581)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455677888888888888877763 2244556666777888888999888888887764 4567788888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 008022 251 THEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNR 330 (581)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (581)
+++|++.|+++.+.. +.+..++..+..++...|++++|...+.++.+.. |.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999888763 2245668888889999999999999998888764 44566777888888889999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh
Q 008022 331 MISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI 410 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 410 (581)
+....+ .+..++..+...+...|++++|...++++.... |.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 887643 256788888899999999999999999998875 6677888889999999999999999999887754 3356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
.++..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|++++|.+.++++++.. +.+..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 788889999999999999999999998864 4567788999999999999999999999999874 66888999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcc
Q 008022 491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSNL 565 (581)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 565 (581)
...|++++|++.++++.+ ..| +..++..++.++.+.|++++|...|+++++. .|+ ...+..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 999999999999999988 445 5778999999999999999999999999873 554 566777777666544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5e-29 Score=235.41 Aligned_cols=375 Identities=15% Similarity=0.114 Sum_probs=271.3
Q ss_pred HHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHH
Q 008022 144 SICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETS 219 (581)
Q Consensus 144 ~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 219 (581)
.+.+.|++++|.+.+.++ |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 344445555555544443 3444444555555566666666666666655542 33555666666677777777777
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 008022 220 LGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN 299 (581)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (581)
...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|...+.++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 77777666552 223445666677777777777777777776665321 3344566666677777777777777777665
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022 300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN 379 (581)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (581)
. |.+..++..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..... |.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 3 445677777777788888888888888887776432 45677777888888888888888888877664 55677888
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG 459 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (581)
.+..++...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 88888888999999999998888765 3356678888889999999999999999988874 667888899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG 530 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 530 (581)
++++|.+.++++.+.. +.+..++..++.+|.+.|++++|.+.++++.+ +.| +...|..++..+...|
T Consensus 320 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHhHHHHHHHcc
Confidence 9999999999998764 45678889999999999999999999999988 456 5667888877776655
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3e-28 Score=232.44 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=117.6
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCcccHHH
Q 008022 377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR---------VKEAFELVTEIEKCGIQLNIVT 447 (581)
Q Consensus 377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 447 (581)
.++.+|++|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.+. .++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455555666666666666666666555556666666666655554332 4556666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHH
Q 008022 448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGIC 527 (581)
Q Consensus 448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 527 (581)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|+.|+.+|+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666666666666666666 456666666666666666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022 528 NSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS 563 (581)
Q Consensus 528 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 563 (581)
+.|++++|.+++++|.+.|..|+..||..+...+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.4e-28 Score=231.33 Aligned_cols=185 Identities=16% Similarity=0.257 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---------hhHHHHHHHHHhhCCCCCChhhH
Q 008022 308 YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM---------FHQAHSLIEKMAFENCPPNTVTF 378 (581)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 378 (581)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+. .+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444444444444444444444444444444444444443322 34455555555555555555555
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022 379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA 458 (581)
Q Consensus 379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (581)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008022 459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK 492 (581)
Q Consensus 459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (581)
|+.++|.+++++|.+.+..|+..||+.++..+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555554443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.1e-26 Score=222.86 Aligned_cols=273 Identities=13% Similarity=-0.026 Sum_probs=203.0
Q ss_pred HHhHHHHHHHHHh---cCChhhHHHHHHHHHh-----CC-C-------CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008022 270 VVAYSTLIHGLCS---NGSMDEAVSVSYQMEE-----NS-C-------PPNVTTYSALIDGFAKAGNLLGASQIWNRMIS 333 (581)
Q Consensus 270 ~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~-~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (581)
...+......+.. .|++++|...+.++.+ .. . +.+...+..+...+...|++++|...++++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334444444443 6778888888887776 21 1 22355677777788888888888888888877
Q ss_pred CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 008022 334 NGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTY 413 (581)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 413 (581)
..+. ...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 6433 6677778888888888888888888887764 5567778888888888888888888888887765 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHH
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-LD----AITFNIIIY 488 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 488 (581)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++...... ++ ...+..++.
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 778888888888888888888887763 446677788888888888888888888888765211 11 337888888
Q ss_pred HHHh---cCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 489 AYCK---QGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 489 ~~~~---~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
++.. .|++++|.+.++++.. ..| +..++..++.+|...|++++|...|+++.+. .|+..
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASK---LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 8888 8888888888888877 345 5667888888888888888888888888874 45543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.8e-25 Score=217.68 Aligned_cols=453 Identities=11% Similarity=-0.030 Sum_probs=323.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (581)
....+...+..+.+.|++++|+..|+++...+ |++..|..+..++.+.|++++|...++.+.+.+ +.+...+..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 45678888999999999999999999999866 688999999999999999999999999998876 567788999999
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHH
Q 008022 109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLL 188 (581)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (581)
++...|++++|...|+.+...+. ++......++..+........+.+.+..+......-+. +......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~---------- 149 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE-LSTQPAK---------- 149 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCChhh----------
Confidence 99999999999999999988753 34444444444333322222222211111000000000 0000000
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc---cCCHHHHHHHHHHHHh--
Q 008022 189 CEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL---GGRTHEASDLWNRMIR-- 263 (581)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-- 263 (581)
.........|+...... +.......... .....+.+...+......+.. .|++++|...++++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 219 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMAS----FFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLF 219 (514)
T ss_dssp -------CCCCHHHHHH----HHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCchhHHHHH----HHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHh
Confidence 00000001111111111 11000000000 000001123334444444444 7889999999988877
Q ss_pred ---CCC--------CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 264 ---EGF--------LPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMI 332 (581)
Q Consensus 264 ---~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (581)
... +.+...+..+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 311 123456778888899999999999999998876533 8888889999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhh
Q 008022 333 SNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITT 412 (581)
Q Consensus 333 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 412 (581)
...+ .+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.+.+.. +.+...
T Consensus 298 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 374 (514)
T 2gw1_A 298 KLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEV 374 (514)
T ss_dssp TTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHH
T ss_pred hcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHH
Confidence 8643 366788889999999999999999999998875 5677888999999999999999999999987754 345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLN------IVTYNTILHGVCR---AGMVVEAFQLLGKMLIEGTKLDAITF 483 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 483 (581)
+..+...+...|++++|...++.+.+.. +.+ ...+..+...+.. .|++++|.+.++++.... +.+..++
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 452 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 8889999999999999999999987652 112 3378888999999 999999999999999875 5578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 008022 484 NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDI 516 (581)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 516 (581)
..++.+|...|++++|.+.++++.+ +.|+.
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~ 482 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESAD---LARTM 482 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCSSH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---hcccc
Confidence 9999999999999999999999998 55753
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=9.2e-25 Score=216.10 Aligned_cols=430 Identities=11% Similarity=0.026 Sum_probs=216.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc
Q 008022 68 YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK 147 (581)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (581)
+......+.+.|++++|...|+++.+.. +.++..+..+..++...|++++|.+.++++.+.+ +.+..++..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 3444444444455555555554444433 3344444444444445555555555555444432 1133344444444444
Q ss_pred cCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022 148 LGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG--IDPNVITYSTIISSLCDVGNVETSLGILGQ 225 (581)
Q Consensus 148 ~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 225 (581)
.|++++|...++.+..++......+..+...+....|...++.+.... ..+........+..+....+.+.+...+..
T Consensus 106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 455555544444332222222222333334444455666666654431 011111122233334444444444333322
Q ss_pred HHHcCCCCCcc-cHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhcCChhhH
Q 008022 226 MFVRGCNPNIH-SFTSLLKGYLL--------GGRTHEASDLWNRMIREGFLPNV-------VAYSTLIHGLCSNGSMDEA 289 (581)
Q Consensus 226 ~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a 289 (581)
.... .+... ....+...+.. .|++++|..+++++.+..+. +. .++..+...+...|++++|
T Consensus 186 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 186 SSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 1111 11100 11222222211 23566777777776665322 21 2344455556666677777
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC
Q 008022 290 VSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE 369 (581)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 369 (581)
...+..+.+.. |+...+..+...+...|++++|...++++....+ .+..++..+...+...|++++|...+++....
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77776666643 3355666666666666777777777766665532 24556666666666667777777776666655
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----ccc
Q 008022 370 NCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI-----QLN 444 (581)
Q Consensus 370 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~ 444 (581)
. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+... ...
T Consensus 340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 3 4445566666666666677777777766665543 33445566666666666777777766666654320 011
Q ss_pred HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 445 IVTYNTILHGVCRA----------GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 445 ~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
...+......+... |++++|...++++.... +.+..++..++.+|...|++++|.+.++++.+
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 12233334455555 66677777776666653 34556666666667777777777777776666
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.9e-23 Score=206.65 Aligned_cols=430 Identities=13% Similarity=0.030 Sum_probs=308.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (581)
....+..++..+.+.|++++|+..|+++....+ .++..+..+..++.+.|++++|...|+++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345677778888888888888888888887654 567778888888888888888888888887765 556777778888
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhC-------CCcchHHHHHHHHHhcCCh
Q 008022 109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFG-------SGVSVYNALINGLCKEHKI 181 (581)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~l~~~~~~~~~~ 181 (581)
++...|++++|...|+.+ .. .|+ .....+..+...+....|...++..- .........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 888888888888888633 22 122 11222334445555667777777661 1112223444455555665
Q ss_pred hHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHc--------cCChhHHHHHHHHHHHcCCCCC--------cccHHHHHHH
Q 008022 182 EEAFWLLCEMVDRGIDPNVI-TYSTIISSLCD--------VGNVETSLGILGQMFVRGCNPN--------IHSFTSLLKG 244 (581)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~ 244 (581)
+.+...+...... .+... ....+...+.. .|++++|..+++++.+.. |+ ..++..+...
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHH
Confidence 5555443322211 11111 22222222222 247888888888888763 33 2245666777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 008022 245 YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGA 324 (581)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (581)
+...|++++|...++++.+. .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...+...|++++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 88899999999999999887 4557778888889999999999999999988764 55788899999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC
Q 008022 325 SQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY 404 (581)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 404 (581)
...++++....+. +...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...|+.+.+.
T Consensus 330 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999886433 56788889999999999999999999998875 667788899999999999999999999998653
Q ss_pred CCC-----CChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022 405 ECL-----PNITTYNELLDGLLRV----------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLG 469 (581)
Q Consensus 405 ~~~-----~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 469 (581)
... .....+......+... |++++|...++.+.+.. +.+...+..+...+...|++++|.+.++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 311 1112234445667777 99999999999999874 5577889999999999999999999999
Q ss_pred HHHHCC
Q 008022 470 KMLIEG 475 (581)
Q Consensus 470 ~~~~~~ 475 (581)
++.+..
T Consensus 487 ~al~~~ 492 (537)
T 3fp2_A 487 DSAILA 492 (537)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999864
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.8e-23 Score=201.76 Aligned_cols=374 Identities=14% Similarity=0.059 Sum_probs=246.2
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 008022 162 GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSL 241 (581)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (581)
|.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 5556666777777777777777777777766652 2355666666677777777777777777776653 3345566666
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 008022 242 LKGYLLGGRTHEASDLWNRMIREGFLPNV---VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKA 318 (581)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (581)
...|...|++++|.+.|+++.+.... +. ..+..+...+.. ..+......+...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 66677777777777777766665311 22 334433332110 0112233446667
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 008022 319 GNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLL 398 (581)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 398 (581)
|++++|...++++....+ .+...+..+..++...|++++|...++++.... +.+..++..+..++...|++++|...|
T Consensus 157 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777766532 255666677777777777777777777776553 456677777777777777777777777
Q ss_pred HHHhhCCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCccc----HHHHHHHHHHHHhcCCHH
Q 008022 399 DQMKQYECLPNITTYNEL------------LDGLLRVNRVKEAFELVTEIEKCGIQLN----IVTYNTILHGVCRAGMVV 462 (581)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 462 (581)
+.+.... +.+...+..+ ...+...|++++|...|+.+.+.. +.+ ...+..+...+.+.|+++
T Consensus 235 ~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 235 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHH
Confidence 7776543 2233333333 778888999999999999988753 222 346778888899999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHH------------HHcc
Q 008022 463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWG------------ICNS 529 (581)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~ 529 (581)
+|...++++.... +.+..++..++.+|...|++++|.+.++++.+ +.| +...+..+..+ |...
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE---HNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 9999999988764 45778899999999999999999999999988 556 45566666633 3333
Q ss_pred C-----CHHHHHHHHHHH-HHcCCCCC----H-------HhHHHHHHHHHhccCCCChH
Q 008022 530 G-----GMQEAFIYLQKM-LNEGICPN----F-------ATWNVLVRSLFSNLGHLGPV 571 (581)
Q Consensus 530 g-----~~~~A~~~~~~~-~~~~~~~~----~-------~~~~~l~~~~~~~g~~~~a~ 571 (581)
| +.+++.+.|+++ ++. .|+ . ..+..+..++...|+.+.+.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4 567778888874 442 332 1 25566666776666655543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.5e-23 Score=200.83 Aligned_cols=357 Identities=12% Similarity=0.045 Sum_probs=223.2
Q ss_pred HHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008022 118 GAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVD 193 (581)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (581)
.+...+.+.... .+.+...+..+...+.+.|++++|+..++++ |.+..++..+..++...|++++|...|+++.+
T Consensus 10 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444544444 2335677888999999999999999999987 77888999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-c---ccHHHHHHH------------HHccCCHHHHHHH
Q 008022 194 RGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN-I---HSFTSLLKG------------YLLGGRTHEASDL 257 (581)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~------------~~~~~~~~~a~~~ 257 (581)
.+. .+..++..+..++...|++++|...|+++.+.. |+ . ..+..+... +...|++++|...
T Consensus 89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 743 367788899999999999999999999998863 43 3 555555433 5555555666665
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008022 258 WNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCS 337 (581)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (581)
++++.+.. +.+...+..+..+|...|++++|...+.++.+.. +.+..++..+...+...|++++|...++++....+.
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 55555442 1244445555555555555555555555555432 334455555555555555555555555555443211
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCC-----hhh
Q 008022 338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPN-----ITT 412 (581)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 412 (581)
+...+..+... . .......+...+...|++++|...|+.+.+.. |+ ...
T Consensus 244 -~~~~~~~~~~~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~ 297 (450)
T 2y4t_A 244 -HKRCFAHYKQV--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRS 297 (450)
T ss_dssp -CHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred -hHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 11112111000 0 00011122566667777777777777776543 33 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH---
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA--- 489 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--- 489 (581)
+..+...+.+.|++++|+..++.+.+.. +.+...+..+..+|...|++++|...++++++.. +.+...+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHH
Confidence 6666777777777777777777776653 4456777777777777777777777777777653 3345555555532
Q ss_pred ---------HHhcC-----CHHHHHHHHHH-Hhc
Q 008022 490 ---------YCKQG-----KVNNAIQLLDR-IRG 508 (581)
Q Consensus 490 ---------~~~~g-----~~~~A~~~~~~-~~~ 508 (581)
|...| +.+++.+.+++ ..+
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 33334 55667777776 443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.4e-20 Score=174.11 Aligned_cols=326 Identities=13% Similarity=0.050 Sum_probs=214.3
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 008022 201 ITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGL 280 (581)
Q Consensus 201 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (581)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHH
Confidence 344455555566666666666666655542 22345555555555566666666666655555421 1344455555555
Q ss_pred HhcCChhhHHHHHHHHHhCCCC---CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 008022 281 CSNGSMDEAVSVSYQMEENSCP---PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFH 357 (581)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 357 (581)
...|++++|...+..+.+.. + .+...+..+..... ...+..+...+...|+++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55556666655555555432 1 12222222211100 001122356677788888
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 358 QAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIE 437 (581)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 437 (581)
+|...++++.... |.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888887764 5667778888888888888888888888887764 4466777888888888888888888888887
Q ss_pred HcCCcccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHH
Q 008022 438 KCGIQLNIVTYN------------TILHGVCRAGMVVEAFQLLGKMLIEGTKLDA----ITFNIIIYAYCKQGKVNNAIQ 501 (581)
Q Consensus 438 ~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 501 (581)
+.. +.+...+. .+...+.+.|++++|...++++..... .+. ..+..++.++...|++++|++
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 753 33333332 235668889999999999999988642 233 235567889999999999999
Q ss_pred HHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHH
Q 008022 502 LLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSL 561 (581)
Q Consensus 502 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 561 (581)
.++++.+ ..| +..++..++.++...|++++|...|+++++. .|+ ...+..+..+.
T Consensus 294 ~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 294 ICSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHH---hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999988 346 6778899999999999999999999999874 565 44444444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=2.8e-20 Score=173.69 Aligned_cols=331 Identities=14% Similarity=0.071 Sum_probs=233.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 008022 164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLK 243 (581)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (581)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567888999999999999999999998874 3367788889999999999999999999999874 346788889999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCH
Q 008022 244 GYLLGGRTHEASDLWNRMIREGFL--PNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNL 321 (581)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (581)
.+...|++++|...++++.+.... .+...+..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999987320 13333433321100 11122334455556666
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH
Q 008022 322 LGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM 401 (581)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 401 (581)
++|...++++.+..+ .+...+..+...+...|++++|...+++..... |.+...+..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666555432 244555555666666666666666666665543 445556666666666666666666666666
Q ss_pred hhCCCCCChhhH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH----HHHHHHHHHHHhcCCHHHHH
Q 008022 402 KQYECLPNITTY------------NELLDGLLRVNRVKEAFELVTEIEKCGIQLNI----VTYNTILHGVCRAGMVVEAF 465 (581)
Q Consensus 402 ~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 465 (581)
.+.. +.+...+ ..+...+...|++++|...++.+.+.. +.+. ..+..+...+...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5433 1122222 233666888999999999999988764 2233 23455778889999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHH
Q 008022 466 QLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGIC 527 (581)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 527 (581)
+.++++.... +.+..++..++.+|...|++++|.+.++++.+ +.| +...+..+..+..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE---HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCChHHHHHHHHHHH
Confidence 9999999874 45788999999999999999999999999998 557 4556666655543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=9.2e-19 Score=170.05 Aligned_cols=353 Identities=10% Similarity=-0.015 Sum_probs=158.1
Q ss_pred CcchHHHHHHHHHc----cCCHHHHHHHHHHh--CCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccH
Q 008022 134 DAVSYTTIVSSICK----LGQVEEARELAMRF--GSGVSVYNALINGLCK----EHKIEEAFWLLCEMVDRGIDPNVITY 203 (581)
Q Consensus 134 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (581)
++.....+...|.. .+++++|...+++. ..+...+..|...|.. .+++++|..+|++..+.| ++..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44444445455544 45555555555544 3334444444444444 455555555555544432 33334
Q ss_pred HHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 008022 204 STIISSLCD----VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL----GGRTHEASDLWNRMIREGFLPNVVAYST 275 (581)
Q Consensus 204 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (581)
..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 444444444 444555555555444433 23334444444443 344444444444444432 3334444
Q ss_pred HHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022 276 LIHGLCS----NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLC 351 (581)
Q Consensus 276 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (581)
+...|.. .++.++|...+++..+.+ ++..+..+...|... ..
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g-------------------------------~g 234 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG-------------------------------IG 234 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT-------------------------------SS
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC-------------------------------CC
Confidence 4444444 444444444444444432 233334444444330 00
Q ss_pred ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----
Q 008022 352 QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG----CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV---- 423 (581)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 423 (581)
..+++++|..++++....+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...|...
T Consensus 235 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTB
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCC
Confidence 1444455555554444332 22333333333433 445555555555544432 223333444444443
Q ss_pred -CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCC
Q 008022 424 -NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG---MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGK 495 (581)
Q Consensus 424 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 495 (581)
+++++|...++...+.+ +...+..+...|...| ++++|.+++++..+.+ ++..+..+...|.. .++
T Consensus 309 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 45555555555554433 2233334444444433 4455555555555432 34444455555554 455
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHc
Q 008022 496 VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 496 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 545 (581)
+++|.++++++.+. .++..+..++..|.. .+++++|...|+++.+.
T Consensus 383 ~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 55555555555441 133444445555544 45555555555555443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=3.6e-18 Score=165.84 Aligned_cols=361 Identities=13% Similarity=0.033 Sum_probs=291.5
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc----cCCHHHHHH
Q 008022 185 FWLLCEMVDRGIDPNVITYSTIISSLCD----VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL----GGRTHEASD 256 (581)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 256 (581)
+..+....+.| ++..+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444432 55666666777766 788888888888887764 56677777777877 788888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHH
Q 008022 257 LWNRMIREGFLPNVVAYSTLIHGLCS----NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK----AGNLLGASQIW 328 (581)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 328 (581)
.|++..+.+ +...+..|...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|...|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888888764 56666777777877 778899999999888765 56677778888876 78899999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----CCChHHHHHHHHH
Q 008022 329 NRMISNGCSPNVVAYTCMVKVLCQ----NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG----CGRVDWAMKLLDQ 400 (581)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 400 (581)
++..+.+ +...+..+...|.. .+++++|..++++....+ ++..+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9988864 67778888888887 789999999999988764 56677777777775 7899999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 008022 401 MKQYECLPNITTYNELLDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA-----GMVVEAFQLLGKM 471 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 471 (581)
..+.+ +...+..+...|.. .+++++|+..|+...+.| +...+..+...|... +++++|...+++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98764 45666777777877 899999999999998765 556777788888877 8999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHH
Q 008022 472 LIEGTKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAFIYLQKMLN 544 (581)
Q Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 544 (581)
.+.+ +...+..+...|...| ++++|+++++++.+. .++..+..++..|.. .+++++|+.+|+++.+
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 9865 5677888999988867 899999999999982 467889999999998 8999999999999998
Q ss_pred cCCCCCHHhHHHHHHHHHh----ccCCCChHHHHHHHhh
Q 008022 545 EGICPNFATWNVLVRSLFS----NLGHLGPVYILDDIMA 579 (581)
Q Consensus 545 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 579 (581)
.| +...+..+...+.. .++.++|.+++++.++
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 64 56677788888887 7899999999998775
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=7.2e-20 Score=168.70 Aligned_cols=283 Identities=12% Similarity=-0.007 Sum_probs=129.8
Q ss_pred CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHH
Q 008022 234 NIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID 313 (581)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (581)
+...+..+...+...|++++|.++++++.+..+ .+...+..++..+...|++++|...+.++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 334444444444455555555555555444321 122333334444444555555555555444432 223344444444
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChH
Q 008022 314 GFAKAG-NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVD 392 (581)
Q Consensus 314 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 392 (581)
.+...| ++++|...++++....+. +...+..+...+...|++++|...+++..... +.+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~---------------- 160 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHL---------------- 160 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSH----------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHH----------------
Confidence 444444 444455544444443211 23334444444444444444444444444332 22233
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 393 WAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML 472 (581)
Q Consensus 393 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 472 (581)
.+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.
T Consensus 161 -------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 161 -------------------PMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp -------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33334444444444444444444444432 3334444444555555555555555555544
Q ss_pred HCC--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 473 IEG--------TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 473 ~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
... .+....++..++.+|...|++++|++.++++.+ ..| +...+..++.++...|++++|...++++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 321 022234555555555555555555555555554 223 34455555555555555555555555555
Q ss_pred HcCCCC-CHHhHHHHHHHH
Q 008022 544 NEGICP-NFATWNVLVRSL 561 (581)
Q Consensus 544 ~~~~~~-~~~~~~~l~~~~ 561 (581)
+. .| +...+..+..++
T Consensus 298 ~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 298 GL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp TT--CSCCHHHHHHHHHHH
T ss_pred cc--CCCchHHHHHHHHHH
Confidence 42 23 333444444444
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=3.6e-17 Score=165.80 Aligned_cols=280 Identities=12% Similarity=0.092 Sum_probs=139.4
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 008022 112 KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEM 191 (581)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (581)
..+++++|.++.++.. ++.+|..+..++...|++++|+..+.+. .+...|..++.++.+.|++++|.+.|...
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA-dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555544331 3445555555555555555555555443 44445555555555555555555555544
Q ss_pred HHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 008022 192 VDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVV 271 (581)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 271 (581)
.+.. +++...+.++.+|++.++++...... + .++...+..+...|...|++++|..+|... .
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence 4432 22222223555555555554322221 1 223344444555555555555555555543 2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022 272 AYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLC 351 (581)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (581)
.|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 1291 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHH
Confidence 4555555555555555555555443 13455555555555555555555444322 123444556666666
Q ss_pred ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC--CChHHHHHHHHHHhhCCCC------CChhhHHHHHHHHHhc
Q 008022 352 QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC--GRVDWAMKLLDQMKQYECL------PNITTYNELLDGLLRV 423 (581)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~ 423 (581)
+.|.+++|+.+++...... +.....|+.+..+|++. ++..++.+.|..-.. ++ .+...|..++..|.+.
T Consensus 1292 ~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred HcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhc
Confidence 6666666666666655443 34444555555444443 233333333332211 11 1334566666666666
Q ss_pred CCHHHHH
Q 008022 424 NRVKEAF 430 (581)
Q Consensus 424 ~~~~~a~ 430 (581)
|+++.|.
T Consensus 1369 ~e~dnA~ 1375 (1630)
T 1xi4_A 1369 EEYDNAI 1375 (1630)
T ss_pred ccHHHHH
Confidence 6666665
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=5.6e-20 Score=169.40 Aligned_cols=272 Identities=10% Similarity=-0.045 Sum_probs=227.2
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 008022 302 PPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTF 381 (581)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 381 (581)
+.++..+......+...|++++|..+++++.+..+. +...+..++..+...|++++|...++++.... +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 445666777777888888888888888888776432 45566677788888899999999998888764 5677888888
Q ss_pred HHHhhcCC-ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022 382 IKGLCGCG-RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM 460 (581)
Q Consensus 382 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (581)
...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 89999999 9999999999998765 3456788899999999999999999999998874 4456777779999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-------CCCCHHhHHHHHHHHHccCCHH
Q 008022 461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE-------WNPDIISYTSLLWGICNSGGMQ 533 (581)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~ 533 (581)
+++|.+.++++.... +.+..++..++..+...|++++|...++++.+... ......++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999875 55788999999999999999999999999876211 1234678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 534 EAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 534 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+|...++++++.. +.+...+..+..++...|++++|.+.++++++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999998852 34567888999999999999999999998875
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=1.1e-16 Score=162.21 Aligned_cols=420 Identities=11% Similarity=0.111 Sum_probs=318.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH
Q 008022 28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFG--LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNI 105 (581)
Q Consensus 28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 105 (581)
.+++-.....++|+..|++.+|+++++++.-.+ +..+...-+.++.+..+. +..+..++.+.+... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 466667778899999999999999999998421 224556667777777777 556666666655421 1 344
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHH
Q 008022 106 LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAF 185 (581)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (581)
+...+...|.+++|..+|++... .....+.+ +...|++++|.++.++. .++.+|..+..++...|++++|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHH
Confidence 77888899999999999999631 11222222 23788999999998887 55888999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008022 186 WLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG 265 (581)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (581)
..|.+. -|...|..++..+.+.|++++|.+.+....+.. +++.....++.+|.+.+++++...+. +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 999663 377888899999999999999999999888764 44444556889999999988644432 2
Q ss_pred CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 008022 266 FLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTC 345 (581)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (581)
.++...+..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 346677778999999999999999999874 47999999999999999999999876 36788999
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc--
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV-- 423 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 423 (581)
+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|..+...+.+.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 999999999999998877642 4567778899999999999999999998887655 34455676676666653
Q ss_pred CCHHHHHHHHHHHHHcCCcc------cHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCcCHHHHH
Q 008022 424 NRVKEAFELVTEIEKCGIQL------NIVTYNTILHGVCRAGMVVEAFQLL-------------GKMLIEGTKLDAITFN 484 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~ 484 (581)
++..++.+.|..-.. +++ +...|..++..|.+.|+++.|.... ...+. -..++..|.
T Consensus 1330 eklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyy 1405 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYY 1405 (1630)
T ss_pred HHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHH
Confidence 344455555543222 222 4567889999999999999988322 22221 144777787
Q ss_pred HHHHHHHhcC---------------CHHHHHHHHH
Q 008022 485 IIIYAYCKQG---------------KVNNAIQLLD 504 (581)
Q Consensus 485 ~l~~~~~~~g---------------~~~~A~~~~~ 504 (581)
..+..|...+ |++++.+++.
T Consensus 1406 kai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1406 RAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 7777777666 7777777776
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=2.2e-18 Score=169.19 Aligned_cols=428 Identities=12% Similarity=0.083 Sum_probs=278.8
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---CCC
Q 008022 88 YSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF---GSG 164 (581)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~ 164 (581)
|++..+.. |.+...|..++.. .+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++. .|+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44444443 5577788888874 6788999999999998876 3345667888888888888888888888887 346
Q ss_pred cchHHHHHHHH-HhcCChhHHHH----HHHHHHHC-CCCC-CcccHHHHHHHHHc---------cCChhHHHHHHHHHHH
Q 008022 165 VSVYNALINGL-CKEHKIEEAFW----LLCEMVDR-GIDP-NVITYSTIISSLCD---------VGNVETSLGILGQMFV 228 (581)
Q Consensus 165 ~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 228 (581)
...|..++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66676666533 34566666654 66655443 4433 34455555555443 5667777777777765
Q ss_pred cCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHH------HhCC--
Q 008022 229 RGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQM------EENS-- 300 (581)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~-- 300 (581)
. |... ...+...|.. ++... +..+...++. ...+++..|..++... .+..
T Consensus 159 ~---P~~~-~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 159 N---PMIN-IEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp S---CCTT-HHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred c---hhhh-HHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2 2211 1111111110 00000 0000000110 0123445555554442 1111
Q ss_pred -CCCc--------HHhHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------cCCh
Q 008022 301 -CPPN--------VTTYSALIDGFAKA----GNL----LGASQIWNRMISNGCSPNVVAYTCMVKVLCQ-------NNMF 356 (581)
Q Consensus 301 -~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~ 356 (581)
++|+ ...|...+...... ++. ..+..+|+++....+ .+...|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccch
Confidence 2333 23444444332221 222 367778888877532 366777777777765 6887
Q ss_pred h-------HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCC-h-hhHHHHHHHHHhcCCHH
Q 008022 357 H-------QAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPN-I-TTYNELLDGLLRVNRVK 427 (581)
Q Consensus 357 ~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~ 427 (581)
+ +|..++++....-.|.+...+..++..+.+.|++++|..+|+++.+.. |+ . ..|..++..+.+.|+++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHH
Confidence 6 899999998863236678888889999999999999999999998853 43 2 47888888888899999
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 428 EAFELVTEIEKCGIQLNIVTYNTILHG-VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRI 506 (581)
Q Consensus 428 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (581)
+|.++|+...+.. +.+...+...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|++++|..+|+++
T Consensus 374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 9999999998753 2233333332222 346899999999999998864 446788999999999999999999999999
Q ss_pred hcCCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 507 RGGGEWNPD--IISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 507 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
....+..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 885444443 447777788888889999999999998764
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3.1e-18 Score=168.16 Aligned_cols=414 Identities=9% Similarity=0.033 Sum_probs=272.0
Q ss_pred CcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 008022 134 DAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISS 209 (581)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (581)
+...|..++. +...|++++|..+++++ |.+...|..++..+.+.|++++|..+|+++... .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 5566777776 36677788888877776 666777777777777778888888888777765 3465556555542
Q ss_pred H-HccCChhHHHH----HHHHHHHc-CCCC-CcccHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCHHhH
Q 008022 210 L-CDVGNVETSLG----ILGQMFVR-GCNP-NIHSFTSLLKGYLL---------GGRTHEASDLWNRMIREGFLPNVVAY 273 (581)
Q Consensus 210 ~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (581)
. ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++.++....+....|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 34566665554 55554432 3332 34455555554433 46667777777776663111001122
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH------HhCC---CCCC-----
Q 008022 274 STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRM------ISNG---CSPN----- 339 (581)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~----- 339 (581)
..........|. ..+. .++. ...+++..|..++..+ .+.. ++|+
T Consensus 169 ~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 211111000010 0000 0110 1233455666655542 2221 2333
Q ss_pred ---hhhHHHHHHHHHcc----CCh----hHHHHHHHHHhhCCCCCChhhHHHHHHHhhc-------CCChH-------HH
Q 008022 340 ---VVAYTCMVKVLCQN----NMF----HQAHSLIEKMAFENCPPNTVTFNTFIKGLCG-------CGRVD-------WA 394 (581)
Q Consensus 340 ---~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a 394 (581)
...|...+...... ++. ..+..+|++..... |.++..|...+..+.. .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 13444444332221 222 37778899888764 6778888888888775 79987 89
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc-H-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN-I-VTYNTILHGVCRAGMVVEAFQLLGKML 472 (581)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 472 (581)
..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+. +|+ . ..|..++..+.+.|++++|.++|++..
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999986322446778899999999999999999999999985 443 3 578888888889999999999999999
Q ss_pred HCCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC
Q 008022 473 IEGTKLDAITFNIIIYA-YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG-ICP 549 (581)
Q Consensus 473 ~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 549 (581)
+.. +.+...+...+.. +...|++++|..+|+++.+ ..| ++..|..++..+.+.|+.++|..+|++++..+ ..|
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~---~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH---HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 863 3344444443333 3468999999999999988 346 67889999999999999999999999998863 223
Q ss_pred C--HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 550 N--FATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 550 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+ ...|...+......|+.+.+.++.+++++
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34777777777888999999998888764
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=6.8e-20 Score=171.67 Aligned_cols=264 Identities=14% Similarity=0.002 Sum_probs=185.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 008022 306 TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGL 385 (581)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (581)
..+..+...+...|++++|...++++.+..+ .+...+..+..++...|++++|...++++.... |.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3344555555555555666655555555432 244455555555555666666666665555543 44555555555566
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHH----------------HHHHHHHhcCCHHHHHHHHHHHHHcCCcc--cHHH
Q 008022 386 CGCGRVDWAMKLLDQMKQYECLPNITTYN----------------ELLDGLLRVNRVKEAFELVTEIEKCGIQL--NIVT 447 (581)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 447 (581)
...|++++|...++.+...... +...+. .+... ...|++++|...++++.+.. +. +..+
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 219 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLD-PTSIDPDV 219 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH-hhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence 6666666666666655544311 111111 23333 38899999999999998864 33 5788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHH
Q 008022 448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGI 526 (581)
Q Consensus 448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 526 (581)
+..+...+...|++++|...+++++... +.+..++..++.++...|++++|++.++++.+ +.| +..++..++.+|
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 8899999999999999999999998874 45678899999999999999999999999987 345 677899999999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCC-----------HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 527 CNSGGMQEAFIYLQKMLNEGICPN-----------FATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 527 ~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
...|++++|...|+++++.. +.+ ...+..+..++...|+.++|..+.++.++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 99999999999999987642 112 57888999999999999999988876543
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=2.3e-19 Score=167.99 Aligned_cols=307 Identities=11% Similarity=-0.072 Sum_probs=195.2
Q ss_pred HHHccCChhHHHH-HHHHHHHcCC---CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 008022 209 SLCDVGNVETSLG-ILGQMFVRGC---NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG 284 (581)
Q Consensus 209 ~~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 284 (581)
.+...|+++.|.. .+++...... ..+...+..+...+...|++++|...++++.+... .+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCc
Confidence 3444566666665 5554443311 11234455566666666666666666666665532 24455566666666666
Q ss_pred ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 008022 285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIE 364 (581)
Q Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (581)
++++|...+.++.+.. +.+..++..+...+...|++++|...++++....+. +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 6666666666665543 335555666666666666666666666666554321 11111100000 00
Q ss_pred HHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 008022 365 KMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQL 443 (581)
Q Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 443 (581)
. ......+..+...+ ..|++++|...++++.+..... +...+..+...+...|++++|...++++.+.. +.
T Consensus 178 ----~--~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 ----G--AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ----h--hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00000111222333 7789999999999987754221 46788888999999999999999999988763 55
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-C-------
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-D------- 515 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~------- 515 (581)
+...+..+...+...|++++|...+++++... +.+..++..++.+|.+.|++++|...++++.+ +.| +
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~ 325 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN---MQRKSRGPRGEG 325 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHTC------C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCCCccccc
Confidence 67889999999999999999999999998874 45778899999999999999999999999876 233 2
Q ss_pred ----HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 516 ----IISYTSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 516 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
..+|..++.+|...|++++|..++++.+
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5789999999999999999998877544
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.5e-19 Score=167.50 Aligned_cols=258 Identities=13% Similarity=-0.022 Sum_probs=142.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 008022 308 YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG 387 (581)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (581)
+..+...+.+.|++++|...|+++....+ .+...+..+..++...|++++|...++++.... |.+...+..+..+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 44444444444555555555554444321 134444444555555555555555555544432 3344445555555555
Q ss_pred CCChHHHHHHHHHHhhCCCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc--cHHHHHHHHHH
Q 008022 388 CGRVDWAMKLLDQMKQYECLPN-----------ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQL--NIVTYNTILHG 454 (581)
Q Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 454 (581)
.|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+.. +. +..++..+...
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 555555555555554322 11 1122234556666677777777777766653 22 46666666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHH
Q 008022 455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQ 533 (581)
Q Consensus 455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 533 (581)
+...|++++|.+.+++++... +.+..++..++.+|...|++++|++.++++.+ +.| +..++..++.+|...|+++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE---IQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCCCHH
Confidence 777777777777777776653 34566677777777777777777777777666 334 4566677777777777777
Q ss_pred HHHHHHHHHHHcCCCC-------------CHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022 534 EAFIYLQKMLNEGICP-------------NFATWNVLVRSLFSNLGHLGPVYILDD 576 (581)
Q Consensus 534 ~A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (581)
+|...|+++++. .| +...+..+..++...|+.+.+.+..++
T Consensus 299 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 777777776542 12 245566666666666766666655544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=8.1e-19 Score=163.97 Aligned_cols=265 Identities=9% Similarity=-0.090 Sum_probs=174.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 008022 273 YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ 352 (581)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (581)
+..+...+.+.|++++|...++++.+.. |.+...+..+..++...|++++|...|+++.+..+ .+..++..+..++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 4444444444444444444444444432 23444444555555555555555555555444321 134444555555555
Q ss_pred cCChhHHHHHHHHHhhCCCCCC----------hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-CChhhHHHHHHHHH
Q 008022 353 NNMFHQAHSLIEKMAFENCPPN----------TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-PNITTYNELLDGLL 421 (581)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 421 (581)
.|++++|...++++.... |.+ ...+..+...+...|++++|...++++.+.... ++...+..+...+.
T Consensus 146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 555555555555554432 111 223344577888899999999999998776522 15778889999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 008022 422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ 501 (581)
Q Consensus 422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 501 (581)
..|++++|.+.++++.+.. +.+..++..+..+|...|++++|.+.+++++... +.+..++..++.+|...|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998874 5678899999999999999999999999999874 4468889999999999999999999
Q ss_pred HHHHHhcCCCCC----------CCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 502 LLDRIRGGGEWN----------PDIISYTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 502 ~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
.++++.+..+-. .+...|..+..++...|+.+.+..+.++.
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999987622110 02568899999999999999888877653
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1.7e-18 Score=159.26 Aligned_cols=275 Identities=11% Similarity=-0.047 Sum_probs=154.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022 272 AYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLC 351 (581)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 351 (581)
.+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence 34455555666666666666666655542 33555555566666666666666666666555422 24445555555556
Q ss_pred ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH-HH-HHHhcCCHHHH
Q 008022 352 QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL-LD-GLLRVNRVKEA 429 (581)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a 429 (581)
..|++++|...++++.... +.+...+..+.... |+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence 6666666666665555442 22222222220000 000000011 11 24556666777
Q ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022 430 FELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG 509 (581)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (581)
.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..++.++...|++++|++.++++.+
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~- 234 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD- 234 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 77777666553 3456666666667777777777777777766653 34566666777777777777777777777665
Q ss_pred CCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-------------HHhHHHHHHHHHhccCCCChHHHHH
Q 008022 510 GEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-------------FATWNVLVRSLFSNLGHLGPVYILD 575 (581)
Q Consensus 510 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~ 575 (581)
..| +..++..++.++...|++++|...++++.+. .|+ ...+..+..++...|+.++|...++
T Consensus 235 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 235 --INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred --cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 234 4556667777777777777777777776653 233 4556666667777777777766665
Q ss_pred HHh
Q 008022 576 DIM 578 (581)
Q Consensus 576 ~~~ 578 (581)
+.+
T Consensus 311 ~~l 313 (327)
T 3cv0_A 311 QNV 313 (327)
T ss_dssp CCS
T ss_pred HHH
Confidence 443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.6e-17 Score=161.23 Aligned_cols=296 Identities=9% Similarity=-0.105 Sum_probs=133.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCcccHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChh
Q 008022 215 NVETSLGILGQMFVRGCNPNIHSFTSLLKG---YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCS----NGSMD 287 (581)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 287 (581)
++++|...|++..+.. +.++..+..+..+ +...++.++|++.+++..+..+ .+...+..+...+.. .++.+
T Consensus 153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence 4555555555555442 1122222222222 2233444555555555554421 133333333333322 24455
Q ss_pred hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHh
Q 008022 288 EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMA 367 (581)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 367 (581)
+|.+.+++..... +.+...+..+...+...|++++|...+++..+..+. +..++..+..+|...+... .
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~---------~ 299 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQV---------M 299 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHh---------h
Confidence 5666665555432 334555555666666666666666666665554221 3334444433332110000 0
Q ss_pred hCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH-
Q 008022 368 FENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV- 446 (581)
Q Consensus 368 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 446 (581)
... ....... ....+.++.|...++...+.. +.+...+..+...+...|++++|.+.|++..+....+...
T Consensus 300 ~~~-~~~~~~~------~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 300 NLR-ENGMYGK------RKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HC-------CH------HHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred hHH-HHHHHHH------HHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 000 0000000 011123456666666665544 3344566667777777777777777777776653222211
Q ss_pred -HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 447 -TYNTILH-GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 447 -~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
.+..+.. .....|++++|+..|.+.++. .|+..... +....+.+++++..+ ..| ++.+|..++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~---~~p~~~~~~~~LG 437 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLS---KNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHH---HCC-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 1222222 233567777777777777764 33322211 122334455555554 234 566777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 008022 524 WGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.+|...|++++|++.|+++++.
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHCC------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 7777777777888888777764
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.1e-17 Score=151.63 Aligned_cols=239 Identities=13% Similarity=0.137 Sum_probs=70.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 008022 42 RVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYK 121 (581)
Q Consensus 42 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 121 (581)
+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5566777777777772 234777777777777777777777754 2455677777777777777777777
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 008022 122 LLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVI 201 (581)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (581)
.++..++. .+++.+.+.++.+|.+.|+++++.++++. ++..+|+.+...|...|.+++|...|..+ .
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ----------------------------CHHHHTTTTTC--C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 66655553 33456667777777777777776665542 34446666666666666666666666544 2
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 008022 202 TYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLC 281 (581)
Q Consensus 202 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (581)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHH
Confidence 4566666666666666666666655 14555666666666666666664433321 122222334555666
Q ss_pred hcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022 282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK 317 (581)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (581)
+.|.+++|..+++...... +.....|..+..+|++
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 6666666666666555443 3344445555444443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=3.6e-18 Score=157.07 Aligned_cols=280 Identities=9% Similarity=-0.073 Sum_probs=217.6
Q ss_pred CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHH
Q 008022 234 NIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID 313 (581)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 313 (581)
+...+..+...+...|++++|..+++++.+... .+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 456677888899999999999999999988743 367788889999999999999999999998864 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH--HhhcCCCh
Q 008022 314 GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK--GLCGCGRV 391 (581)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 391 (581)
.+...|++++|...++++....+. +...+..+... .++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999887432 22222222111 011111122212 36677888
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 392 DWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM 471 (581)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 471 (581)
++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888887654 3466778888888899999999999999888764 556788888899999999999999999998
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-------------HHhHHHHHHHHHccCCHHHHHHH
Q 008022 472 LIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-------------IISYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~ 538 (581)
.... +.+..++..++.+|...|++++|.+.++++.+ ..|+ ..+|..++.++...|++++|..+
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY---MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8864 45678889999999999999999999999877 2343 66888999999999999999998
Q ss_pred HHHHHH
Q 008022 539 LQKMLN 544 (581)
Q Consensus 539 ~~~~~~ 544 (581)
+++.++
T Consensus 309 ~~~~l~ 314 (327)
T 3cv0_A 309 YAQNVE 314 (327)
T ss_dssp TTCCSH
T ss_pred HHHHHH
Confidence 876543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=6.2e-18 Score=150.89 Aligned_cols=250 Identities=12% Similarity=0.060 Sum_probs=108.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 008022 245 YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGA 324 (581)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (581)
....|++..|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 334455555555554443321111112233344555555555555543322 1233444444455555555555555
Q ss_pred HHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhh
Q 008022 325 SQIWNRMISNGCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ 403 (581)
Q Consensus 325 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 403 (581)
.+.++++...+..| +...+..+..++...|++++|+..+++ +.+...+..++..+.+.|++++|.+.|+.+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555554443222 223333344445555555555555443 23444444444445555555555555555444
Q ss_pred CCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022 404 YECLPNITTYN---ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480 (581)
Q Consensus 404 ~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 480 (581)
.. |+....+ ..+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++++... +.+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 32 2211110 1111222234444444444444443 23344444444444444444444444444444432 2244
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHhc
Q 008022 481 ITFNIIIYAYCKQGKVNN-AIQLLDRIRG 508 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 508 (581)
.++..++..+...|+.++ +.++++++.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444444444444444433 2344444444
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.3e-17 Score=149.69 Aligned_cols=283 Identities=11% Similarity=0.081 Sum_probs=127.0
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 008022 6 GEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMIN 85 (581)
Q Consensus 6 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (581)
-+.|++++|.+.++++. .+.+|..++.++.+.|++++|++.|.+. +++..|..++..+...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 35678999999999882 3459999999999999999999999753 66779999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCc
Q 008022 86 PIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGV 165 (581)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 165 (581)
.+++...+. .+++.+...++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|.++
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567889999999999999999988774 367789999999999999999999999987
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 008022 166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGY 245 (581)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (581)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++..|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYY 217 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHH
Confidence 58999999999999999999999988 27899999999999999999996654432 23344455788999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCC------cHHhHHHHHHHHHhc
Q 008022 246 LLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN-SCPP------NVTTYSALIDGFAKA 318 (581)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~ 318 (581)
.+.|++++|+.+++...... +-....|.-+.-.|++- ++++..+.++..... ++|| +...|..+...|...
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998765 33556677776666655 334433333322221 2222 344566666666666
Q ss_pred CCHHHHHH
Q 008022 319 GNLLGASQ 326 (581)
Q Consensus 319 ~~~~~a~~ 326 (581)
++++.|..
T Consensus 296 ~e~d~A~~ 303 (449)
T 1b89_A 296 EEYDNAII 303 (449)
T ss_dssp TCHHHHHH
T ss_pred chHHHHHH
Confidence 66665554
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.7e-17 Score=148.06 Aligned_cols=275 Identities=11% Similarity=0.034 Sum_probs=209.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 008022 277 IHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMF 356 (581)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 356 (581)
++-....|++..|+..++........+.......+.++|...|+++.|...++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344567899999998887765432111123456678899999999999876654 1345677888888899999999
Q ss_pred hHHHHHHHHHhhCCC-CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008022 357 HQAHSLIEKMAFENC-PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTE 435 (581)
Q Consensus 357 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 435 (581)
++|+..++++...+. |.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999887653 55667777788899999999999999876 46777888899999999999999999999
Q ss_pred HHHcCCcccHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022 436 IEKCGIQLNIVTY---NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW 512 (581)
Q Consensus 436 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 512 (581)
+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|.+.++++.+ .
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---~ 229 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD---K 229 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h
Confidence 98864 443221 223344445689999999999999874 66888899999999999999999999999888 4
Q ss_pred CC-CHHhHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHH
Q 008022 513 NP-DIISYTSLLWGICNSGGMQE-AFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVY 572 (581)
Q Consensus 513 ~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 572 (581)
.| ++.++..++..+...|+.++ +.++++++++ +.|+...... ...+.+.++++..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d---~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKE---YRAKENDFDRLVL 286 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHH---HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHH---HHHHHHHHHHHHH
Confidence 56 67789999999999998876 5788999987 4676554333 2344444555543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.7e-16 Score=153.91 Aligned_cols=382 Identities=10% Similarity=-0.086 Sum_probs=227.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHccCChhHHHHHHHHHHHcC---C-
Q 008022 164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDR-----G--IDP-NVITYSTIISSLCDVGNVETSLGILGQMFVRG---C- 231 (581)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~- 231 (581)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556788888888888888888888776442 1 112 34567777788888888888888887765421 0
Q ss_pred --CC-CcccHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCChhhHHHHHHHHHhCCCCC
Q 008022 232 --NP-NIHSFTSLLKGYL--LGGRTHEASDLWNRMIREGFLPNVVAYSTLIHG---LCSNGSMDEAVSVSYQMEENSCPP 303 (581)
Q Consensus 232 --~~-~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 303 (581)
.+ ...++.....++. ..+++++|++.|++..+..+. ++..+..+..+ +...++.++|++.+++..+.. |.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 11 1233433333333 345677888888877766322 34444444333 334566677777777766653 33
Q ss_pred cHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022 304 NVTTYSALIDGFAK----AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN 379 (581)
Q Consensus 304 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 379 (581)
+...+..+...+.. .+++++|...+++.....+ .+...+..+...+...|++++|...+++..... |.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55555555544443 3456677777777666532 245566677777777777777777777776653 44555565
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG 459 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (581)
.+..+|...+.. ..... .. .........+..++|...++...+.. +.+...+..+...+...|
T Consensus 286 ~lg~~y~~~~~~---------~~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQ---------VMNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---------hhhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 555544321110 00000 00 00001112234678888888888764 455667888899999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAI--TFNIIIY-AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAF 536 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 536 (581)
++++|.+.|++++.....+... .+..++. .+...|++++|+..++++.+ +.|+...... ..+.+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHH
Confidence 9999999999999875433221 2333433 34578999999999999998 5675433222 234455
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 537 IYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+++++.++. .+.+..++..++.++...|++++|++.+++.++
T Consensus 417 ~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 417 KIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667777664 244677899999999999999999999999886
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=1.7e-16 Score=151.35 Aligned_cols=346 Identities=10% Similarity=-0.017 Sum_probs=175.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCh---hHHHHHHHHHHHcCCCCCcccHHHHHHHHHc
Q 008022 171 LINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNV---ETSLGILGQMFVRGCNPNIHSFTSLLKGYLL 247 (581)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (581)
+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|..+|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3444555666666666666665543 333444444555555555 6666666666533 34445555553333
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh---hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 008022 248 GG-----RTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMD---EAVSVSYQMEENSCPPNVTTYSALIDGFAKAG 319 (581)
Q Consensus 248 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (581)
.+ +.++|...|++..+.|.. ..+..|...|...+..+ ++.+.+......+ ++.....+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 33 556666666666665422 24445555555544322 3333444433333 2344455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC----CChH
Q 008022 320 NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN---MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC----GRVD 392 (581)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 392 (581)
.++.+......+...-...++..+..+...|...| ++++|+..|++....+ +++...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 44333333222211111123335566666666666 6677777777776665 44444445555555443 5677
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC-----CHHHH
Q 008022 393 WAMKLLDQMKQYECLPNITTYNELLDG-L--LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG-----MVVEA 464 (581)
Q Consensus 393 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a 464 (581)
+|...|++.. . .+...+..+... + ...+++++|++.|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777665 2 344455555554 3 34667777777777776654 4455555555555 44 77777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHH
Q 008022 465 FQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAF 536 (581)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 536 (581)
.+.|++.. . .++.....++..|.. ..++++|..+|++..+.+ ++.....|+..|.. ..+.++|.
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 77777666 2 255566666666655 236777777777776621 33445556655553 34677777
Q ss_pred HHHHHHHHcC
Q 008022 537 IYLQKMLNEG 546 (581)
Q Consensus 537 ~~~~~~~~~~ 546 (581)
.+|+++.+.|
T Consensus 379 ~~~~~A~~~g 388 (452)
T 3e4b_A 379 VFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHCC
Confidence 7777776655
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=2.5e-16 Score=134.23 Aligned_cols=194 Identities=14% Similarity=0.008 Sum_probs=79.6
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 008022 376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV 455 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (581)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+.. |.+...+..+...+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 333334444444444444444444443332 2233333344444444444444444444444332 22333344444444
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022 456 CRA-----------GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW 524 (581)
Q Consensus 456 ~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (581)
... |++++|+..+++.++.. +.+...+..++.+|...|++++|+..++++.+.. .++..+..++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHH
Confidence 444 55555555555555432 2234444455555555555555555555554411 34444445555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022 525 GICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDD 576 (581)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (581)
+|...|++++|+..|+++++.. +.+...+..+..++...|++++|++.+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555554421 12233444444455555555555544443
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=9.3e-16 Score=146.30 Aligned_cols=381 Identities=14% Similarity=0.059 Sum_probs=212.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHH
Q 008022 106 LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAF 185 (581)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (581)
+...+.+.|++++|.++|++..+.| ++..+..+...|...|+. .++++|.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~---------------------------~d~~~A~ 58 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDP---------------------------AQIKQAE 58 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCC---------------------------CCHHHHH
Confidence 4455556677777777776665543 233333344444444444 0014455
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHH---HHHHH
Q 008022 186 WLLCEMVDRGIDPNVITYSTIISSLCDVG-----NVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTH---EASDL 257 (581)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~ 257 (581)
.+|++..+. ++..+..+...+...| ++++|..+|++..+.| +...+..+...|...+... .+.+.
T Consensus 59 ~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 59 ATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 555444432 3334444444333333 4555666666655544 2224455555554443322 23444
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 008022 258 WNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG---NLLGASQIWNRMISN 334 (581)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 334 (581)
+......| ++.....+...|...+.++++......+.+.-...++..+..+...|...| +.++|...|++..+.
T Consensus 132 ~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 132 ISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 44444333 334455566666666655544444333222111223336677777777777 777888888887777
Q ss_pred CCCCChhhHHHHHHHHHcc----CChhHHHHHHHHHhhCCCCCChhhHHHHHHH-h--hcCCChHHHHHHHHHHhhCCCC
Q 008022 335 GCSPNVVAYTCMVKVLCQN----NMFHQAHSLIEKMAFENCPPNTVTFNTFIKG-L--CGCGRVDWAMKLLDQMKQYECL 407 (581)
Q Consensus 335 ~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~ 407 (581)
|.. +...+..+...|... +++++|..+|++.. +.++..+..+... + ...+++++|...|++..+.|
T Consensus 209 g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 209 GTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp TCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred CCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 633 444445566666544 68888888888877 3355566666655 3 45788888888888888765
Q ss_pred CChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCc
Q 008022 408 PNITTYNELLDGLLRVN-----RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAFQLLGKMLIEGTKL 478 (581)
Q Consensus 408 ~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 478 (581)
+...+..+...|. .| ++++|.+.|+... .| +......+...|.. ..++++|...|++..+.|
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--- 352 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--- 352 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---
Confidence 5566666776666 45 8889998888877 43 55666666666665 348899999999988765
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 479 DAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 479 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+......++.+|.. ..++++|..+++++.+.+ .++.......+......++.++|..+.++..+
T Consensus 353 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 353 QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34456677777764 458899999999988732 13333222223333344566777777776644
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=3.9e-16 Score=133.06 Aligned_cols=200 Identities=13% Similarity=0.034 Sum_probs=165.5
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 008022 337 SPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL 416 (581)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 416 (581)
+++...+..+...+.+.|++++|...+++..... |.+...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4577788889999999999999999999999875 7788999999999999999999999999998876 4466788899
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022 417 LDGLLRV-----------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI 485 (581)
Q Consensus 417 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 485 (581)
...+... |++++|+..+++..+.. |.+...+..+...+...|++++|+..++++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999999874 5567888999999999999999999999999987 78899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
++.+|...|++++|+..++++.+ ..| +...+..++..+...|++++|+..+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999998 456 677889999999999999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1e-15 Score=135.20 Aligned_cols=225 Identities=11% Similarity=0.017 Sum_probs=171.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCC--CCC----hhhH
Q 008022 305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC--PPN----TVTF 378 (581)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 378 (581)
...+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...+++...... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666666677777777777777766655 4566666777777777777777777776655321 111 4667
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022 379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA 458 (581)
Q Consensus 379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (581)
..+...+...|++++|...|++..+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 777788888888888888888887643 442 34566788899999999888763 44667788888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHH
Q 008022 459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFI 537 (581)
Q Consensus 459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 537 (581)
|++++|...++++.... +.+..++..++.+|...|++++|++.++++.+ ..| +..++..++.++...|++++|..
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999998875 45778889999999999999999999999987 345 57788899999999999999999
Q ss_pred HHHHHHHc
Q 008022 538 YLQKMLNE 545 (581)
Q Consensus 538 ~~~~~~~~ 545 (581)
.++++.+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=3.3e-15 Score=133.10 Aligned_cols=245 Identities=12% Similarity=0.012 Sum_probs=163.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChh----hHHHH
Q 008022 306 TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTV----TFNTF 381 (581)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l 381 (581)
..+......+...|++++|...++++.+..+. +...+..+..++...|++++|...+++.... +++.. .+..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHHH
Confidence 34445556666777777777777777665322 3446666667777777777777777777663 22222 36677
Q ss_pred HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH
Q 008022 382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV 461 (581)
Q Consensus 382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (581)
...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776654 3355677777777888888888888888777652 44566666666344445588
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCC------HHhHHHHHHHHHccCCH
Q 008022 462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNPD------IISYTSLLWGICNSGGM 532 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~ 532 (581)
++|.+.++++++.. +.+...+..++.++...|+ +++|...++++.+.....|+ ..+|..++..|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 88888888888764 3456677777777777777 77788888777663222243 24677788888888888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHH
Q 008022 533 QEAFIYLQKMLNEGICPN-FATWNVLV 558 (581)
Q Consensus 533 ~~A~~~~~~~~~~~~~~~-~~~~~~l~ 558 (581)
++|...++++++. .|+ ......+.
T Consensus 238 ~~A~~~~~~al~~--~p~~~~a~~~l~ 262 (272)
T 3u4t_A 238 VKADAAWKNILAL--DPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHC
T ss_pred HHHHHHHHHHHhc--CccHHHHHHHhh
Confidence 8888888888774 454 34444333
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.5e-15 Score=132.73 Aligned_cols=223 Identities=12% Similarity=0.014 Sum_probs=155.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhHHH
Q 008022 272 AYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCS--PN----VVAYTC 345 (581)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 345 (581)
.+..+...+...|++++|...+.++.+.. .+...+..+..++...|++++|...++++.+..+. ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555555666666666666666655544 45555666666666666666666666665543211 11 345666
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR 425 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (581)
+...+...|++++|...+++..... |+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 6666777777777777777766542 332 33455577788888888877654 3345567778888888888
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008022 426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR 505 (581)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 505 (581)
+++|...++++.+.. +.+...+..+...+...|++++|...+++++... +.+..++..++.++...|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888888888764 5567788888888888999999999998888864 45677888888999999999999999988
Q ss_pred Hhc
Q 008022 506 IRG 508 (581)
Q Consensus 506 ~~~ 508 (581)
+.+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=9.1e-15 Score=130.21 Aligned_cols=245 Identities=11% Similarity=0.002 Sum_probs=147.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHH
Q 008022 273 YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN--VVAYTCMVKVL 350 (581)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 350 (581)
+......+...|++++|+..++++.+.. |.+...+..+..++...|++++|...++++...+..|+ ...+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555666666666666655542 23344555555566666666666666666655321111 12255566666
Q ss_pred HccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 008022 351 CQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAF 430 (581)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 430 (581)
...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666553 4455667777777777777777777777776553 334455555552333345777777
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCcC------HHHHHHHHHHHHhcCCHHHHH
Q 008022 431 ELVTEIEKCGIQLNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIEG-TKLD------AITFNIIIYAYCKQGKVNNAI 500 (581)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~ 500 (581)
+.++.+.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ..++..++..|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777653 3445666666777777776 667777777776541 1122 246677778888888888888
Q ss_pred HHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022 501 QLLDRIRGGGEWNP-DIISYTSLLW 524 (581)
Q Consensus 501 ~~~~~~~~~~~~~p-~~~~~~~l~~ 524 (581)
+.++++.+ +.| +...+..+..
T Consensus 242 ~~~~~al~---~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 242 AAWKNILA---LDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHC-
T ss_pred HHHHHHHh---cCccHHHHHHHhhh
Confidence 88888877 456 4444444433
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.4e-13 Score=122.38 Aligned_cols=225 Identities=11% Similarity=-0.055 Sum_probs=181.0
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCChhhH
Q 008022 303 PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ----NNMFHQAHSLIEKMAFENCPPNTVTF 378 (581)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (581)
.++..+..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++....+ ++..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 36677788888888889999999999888873 355677778888888 889999999998888764 67777
Q ss_pred HHHHHHhhc----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 008022 379 NTFIKGLCG----CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNT 450 (581)
Q Consensus 379 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (581)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..++...+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 888888888 889999999998888764 66777788888888 888999999998888765 5566777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHhHHHH
Q 008022 451 ILHGVCR----AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPDIISYTSL 522 (581)
Q Consensus 451 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 522 (581)
+...|.. .+++++|...+++..+.+ +...+..++.+|.. .+++++|++.++++.+. .| ...+..+
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~-~~a~~~l 224 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---EN-GGGCFNL 224 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT---TC-HHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC---CC-HHHHHHH
Confidence 7777777 888899999988888764 56777888888888 88899999999888872 23 6677788
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHcC
Q 008022 523 LWGICN----SGGMQEAFIYLQKMLNEG 546 (581)
Q Consensus 523 ~~~~~~----~g~~~~A~~~~~~~~~~~ 546 (581)
...|.. .+++++|...|+++.+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 888888999998888754
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=1.5e-13 Score=122.29 Aligned_cols=222 Identities=8% Similarity=-0.110 Sum_probs=140.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 008022 269 NVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK----AGNLLGASQIWNRMISNGCSPNVVAYT 344 (581)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (581)
++.++..+...+...|++++|...|++..+. .++..+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455556666666666777777766666662 244556666666666 666777777776666653 555666
Q ss_pred HHHHHHHc----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----CCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 008022 345 CMVKVLCQ----NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG----CGRVDWAMKLLDQMKQYECLPNITTYNEL 416 (581)
Q Consensus 345 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 416 (581)
.+...+.. .+++++|...+++....+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666777777776666543 45566666666666 667777777776666643 34455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 417 LDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 417 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 666777777776666543 34555556666666 667777777776666643 2455666666
Q ss_pred HHHh----cCCHHHHHHHHHHHhc
Q 008022 489 AYCK----QGKVNNAIQLLDRIRG 508 (581)
Q Consensus 489 ~~~~----~g~~~~A~~~~~~~~~ 508 (581)
+|.. .+++++|++.++++.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 6666 6667777777766666
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=3.1e-14 Score=125.14 Aligned_cols=206 Identities=13% Similarity=-0.038 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 008022 341 VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420 (581)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (581)
..+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445556666667777777777777766553 4556667777777777777777777777776654 33556677777778
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022 421 LRVNRVKEAFELVTEIEKCGI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA 499 (581)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 499 (581)
...|++++|.+.++++.+.+. +.+...+..+...+...|++++|.+.++++.... +.+...+..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888776222 3345667777788888888888888888888764 44677788888888888888888
Q ss_pred HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 008022 500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATW 554 (581)
Q Consensus 500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 554 (581)
...++++.+ ..| +...+..++..+...|++++|.++++++.+. .|+....
T Consensus 195 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 195 RQYYDLFAQ---GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp HHHHHHHHT---TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred HHHHHHHHH---hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 888888877 234 5667778888888888888888888888774 4554443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=2e-14 Score=132.49 Aligned_cols=248 Identities=13% Similarity=0.035 Sum_probs=182.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-hhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022 305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM-FHQAHSLIEKMAFENCPPNTVTFNTFIK 383 (581)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 383 (581)
...|..+...+...|++++|+..+++++...+. +...|..+..++...|+ +++|+..+++..... |.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 445666667777778888888888877776432 56677777777777785 888888888887765 567777888888
Q ss_pred HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh-cCCHH
Q 008022 384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR-AGMVV 462 (581)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 462 (581)
++...|++++|+..|+++.+.. +.+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888887765 3466778888888888888888888888888764 4567788888888887 55546
Q ss_pred HH-----HHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC----
Q 008022 463 EA-----FQLLGKMLIEGTKLDAITFNIIIYAYCKQG--KVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG---- 530 (581)
Q Consensus 463 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---- 530 (581)
+| ++.+++++... +.+...|..+..++...| ++++|++.+.++ + ..| +...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~---~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q---PSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T---TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c---cCCCCHHHHHHHHHHHHHHhcccc
Confidence 66 57888888764 446778888888888877 688888888887 4 345 5677888888888764
Q ss_pred -----CHHHHHHHHHHH-HHcCCCCCH-HhHHHHHHHHHh
Q 008022 531 -----GMQEAFIYLQKM-LNEGICPNF-ATWNVLVRSLFS 563 (581)
Q Consensus 531 -----~~~~A~~~~~~~-~~~~~~~~~-~~~~~l~~~~~~ 563 (581)
..++|+++++++ .+ +.|.. ..|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 258899999988 65 45654 445555555543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=3.2e-14 Score=131.13 Aligned_cols=247 Identities=11% Similarity=0.033 Sum_probs=193.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 008022 271 VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN-LLGASQIWNRMISNGCSPNVVAYTCMVKV 349 (581)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (581)
..|..+...+...|++++|+..+.++.... |.+...|..+..++...|+ +++|+..|++++...+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 456677777888888888888888888764 5567788888888888886 88888888888886543 66788888888
Q ss_pred HHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCHHH
Q 008022 350 LCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR-VNRVKE 428 (581)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 428 (581)
+...|++++|+..++++.... +.+...|..+..++...|++++|+..++++.+.+ +.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 888899999999998888775 6778888888888888899999999999988766 3466788888888888 555577
Q ss_pred H-----HHHHHHHHHcCCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-------
Q 008022 429 A-----FELVTEIEKCGIQLNIVTYNTILHGVCRAG--MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG------- 494 (581)
Q Consensus 429 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 494 (581)
| ++.+++.++.. +.+...|..+...+...| ++++|.+.+.++ +. .+.+...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 57888888764 556778888888888877 689999999887 33 2556778888999998874
Q ss_pred --CHHHHHHHHHHH-hcCCCCCC-CHHhHHHHHHHHH
Q 008022 495 --KVNNAIQLLDRI-RGGGEWNP-DIISYTSLLWGIC 527 (581)
Q Consensus 495 --~~~~A~~~~~~~-~~~~~~~p-~~~~~~~l~~~~~ 527 (581)
.+++|+++++++ .+ +.| ....|..++..+.
T Consensus 331 ~~~~~~A~~~~~~l~~~---~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKE---KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHHH
Confidence 258999999999 67 567 4456666665544
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=8.3e-12 Score=122.88 Aligned_cols=458 Identities=11% Similarity=0.033 Sum_probs=222.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---cchHHHH
Q 008022 11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR---FSMINPI 87 (581)
Q Consensus 11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 87 (581)
..+....|++.+..++ .+...|..++..+.+.+.++.+..+|+++...- +.+...|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4455556677777665 499999999999988999999999999998754 3778889888888888888 8999999
Q ss_pred HHHHHhCC-CCCChhhHHHHHHHHHhcCCh--------hHHHHHHHHHhh-CCC-CCCc-chHHHHHHHHHc--------
Q 008022 88 YSNMKRDG-MEPNVFTYNILLKALCKNNRV--------DGAYKLLVEMGN-KGC-APDA-VSYTTIVSSICK-------- 147 (581)
Q Consensus 88 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~~-~~~~~l~~~~~~-------- 147 (581)
|++..... .+|++..|...+....+.++. +...++|+.... .|. .++. ..|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99988763 137888888877766555543 334467776544 355 4433 455555544332
Q ss_pred -cCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHH
Q 008022 148 -LGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQM 226 (581)
Q Consensus 148 -~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 226 (581)
.++.+.+..++++.-..+. .+.++....|....+. + +..+...++.- ...+++.|...+.++
T Consensus 206 eq~~~~~~R~iy~raL~iP~------------~~~~~~w~~Y~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPM------------DCLESMWQRYTQWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCC------------SSHHHHHHHHHHHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCcc------------HHHHHHHHHHHHHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHH
Confidence 2234445555554410000 0001111111111000 0 00011111110 011233333333332
Q ss_pred HHc--CCC---CCc-cc--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-------ChhhHHH
Q 008022 227 FVR--GCN---PNI-HS--FTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG-------SMDEAVS 291 (581)
Q Consensus 227 ~~~--~~~---~~~-~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~ 291 (581)
... ++. |.. .. ...+ -.. .........+ |...+..--..+ ..+.+..
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~-p~~--~~~~~~ql~l---------------W~~yi~fEk~~~~~l~~~~~~~Rv~~ 330 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNL-PKP--NEYDVQQLLI---------------WLEWIRWESDNKLELSDDLHKARMTY 330 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTS-CCT--TCCCHHHHHH---------------HHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHhHhhccccccccchhccC-CCC--chhHHHHHHH---------------HHHHHHHHHhCCccccchhhHHHHHH
Confidence 211 110 000 00 0000 000 0000000111 111111111100 0112333
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 008022 292 VSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS-QIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN 370 (581)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 370 (581)
+|++.... ++..+..|...+..+...|+.++|. .+|++..... +.+...+..++....+.|+++.|..+|+++....
T Consensus 331 ~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 331 VYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44444443 2335555555555555556655564 6666655431 2233344445555555666666666666554321
Q ss_pred ----------CCC-----------ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CCHHH
Q 008022 371 ----------CPP-----------NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV-NRVKE 428 (581)
Q Consensus 371 ----------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 428 (581)
.|. ...+|...+....+.|+.+.|..+|....+.........|...+..-.+. ++.+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 011 12244555555555566666666666665531111222332222222222 33666
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 429 AFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK--LDAITFNIIIYAYCKQGKVNNAIQLLDRI 506 (581)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (581)
|.++|+...+. .+.+...+...+......|+.+.|..+|++.+....+ .....|...+..-.+.|+.+.+.++.+++
T Consensus 489 Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 489 ACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666554 2334444555555555566666666666666654321 12345555555555666666666666666
Q ss_pred hc
Q 008022 507 RG 508 (581)
Q Consensus 507 ~~ 508 (581)
.+
T Consensus 568 ~~ 569 (679)
T 4e6h_A 568 FE 569 (679)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=7.6e-15 Score=131.00 Aligned_cols=217 Identities=11% Similarity=-0.086 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHhCCCC---CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHH
Q 008022 319 GNLLGASQIWNRMISNGCS---PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAM 395 (581)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 395 (581)
|++++|...++++.+.... .+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 3444455555444443211 122334444444555555555555555554442 334445555555555555555555
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022 396 KLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475 (581)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 475 (581)
..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. |+..........+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555554432 2234455555555555555555555555555432 222222222333344455666666665555442
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-----HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-----IISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+++...+ .++..+...++.++|.+.++++.. ..|+ ..++..++..|...|++++|...|+++++
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2222222 244445555555556666555554 1221 34555556666666666666666666654
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=7.6e-15 Score=128.28 Aligned_cols=200 Identities=12% Similarity=0.091 Sum_probs=137.6
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022 339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLD 418 (581)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 418 (581)
....+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 33455556666777777777777777776653 5566777777777778888888888887776654 335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 498 (581)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887764 4566777778888888888888888888887764 4467778888888888888888
Q ss_pred HHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 499 AIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
|++.++++.+ ..| +..++..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTE---QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888877 234 5667888888888888888888888888774
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=3.9e-15 Score=132.92 Aligned_cols=152 Identities=12% Similarity=0.025 Sum_probs=113.0
Q ss_pred hhhcCChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 008022 5 LGEKCEIDGVQYLLQQMKVEGV---SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRF 81 (581)
Q Consensus 5 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (581)
+..+|++++|...|+.+.+... +.+..++..++..+...|++++|...|+++....+ .+...+..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence 4567888999999998887632 23567888888899999999999999998887654 5678888888888889999
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHH
Q 008022 82 SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMR 160 (581)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 160 (581)
++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+. .|+..........+...|++++|...+.+
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999998888765 456778888888888888888888888888775 34443333333334444555555555443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.3e-13 Score=121.03 Aligned_cols=200 Identities=15% Similarity=0.026 Sum_probs=143.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 008022 305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKG 384 (581)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (581)
...+..+...+...|++++|...++++..... .+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 34555666666666777777777766665432 245566666677777777777777777766653 4456667777777
Q ss_pred hhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022 385 LCGCGRVDWAMKLLDQMKQYECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE 463 (581)
Q Consensus 385 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (581)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777888888888887776622223 44566777778888888888888888887764 4457777888888888888888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
|...++++.... +.+...+..++..+...|++++|.+.++++.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888888887754 45677778888888888888888888888877
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1e-13 Score=119.48 Aligned_cols=199 Identities=14% Similarity=-0.019 Sum_probs=114.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022 342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL 421 (581)
Q Consensus 342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (581)
.+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 44444555555555555555555554442 3344555555555556666666666666555433 224445555666666
Q ss_pred hc-CCHHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022 422 RV-NRVKEAFELVTEIEKCGI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA 499 (581)
Q Consensus 422 ~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 499 (581)
.. |++++|...++.+.+.+. +.+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 66 666666666666655211 2224555666666666677777777776666653 33456666666777777777777
Q ss_pred HHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 500 IQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 500 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.+.++++.+..+ ..+...+..+...+...|+.++|..+++.+.+
T Consensus 167 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777776665211 02344555555666667777777777776654
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=8.9e-12 Score=122.66 Aligned_cols=448 Identities=10% Similarity=0.045 Sum_probs=289.5
Q ss_pred cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCC---HHHHHHH
Q 008022 81 FSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQ---VEEAREL 157 (581)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 157 (581)
..+.+..|++.+..+ +.|...|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|. ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666666655 678999999999999999999999999999887 45566778888888888888 9999999
Q ss_pred HHHh---C---CCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHHC-CC-CCC-cccHHHHHHHHHc--------
Q 008022 158 AMRF---G---SGVSVYNALINGLCKEHKI--------EEAFWLLCEMVDR-GI-DPN-VITYSTIISSLCD-------- 212 (581)
Q Consensus 158 ~~~~---~---~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~-------- 212 (581)
|++. . +++..|...+....+.++. +.+.++|+..... |. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 9988 2 7777888888776665553 3344677765543 55 443 3566666654432
Q ss_pred -cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 008022 213 -VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL---GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDE 288 (581)
Q Consensus 213 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (581)
.++.+.+..+|+..+.. +.. . +..+-..|.. .-+...+.+++.+ ...+++.
T Consensus 206 eq~~~~~~R~iy~raL~i--P~~-~-~~~~w~~Y~~fe~~~~~~~a~~~~~e---------------------~~~~y~~ 260 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ--PMD-C-LESMWQRYTQWEQDVNQLTARRHIGE---------------------LSAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCS-S-HHHHHHHHHHHHHHHCTTTHHHHHHH---------------------HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC--ccH-H-HHHHHHHHHHHHHhcCcchHHHHHHH---------------------hhHHHHH
Confidence 23456677777777642 211 1 1111111110 0000001111111 0112222
Q ss_pred HHHHHHHHHh------CCC------------CC----c---HHhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC
Q 008022 289 AVSVSYQMEE------NSC------------PP----N---VTTYSALIDGFAKAG-------NLLGASQIWNRMISNGC 336 (581)
Q Consensus 289 a~~~~~~~~~------~~~------------~~----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~ 336 (581)
|...+.++.. ... |+ + ...|...+..-...+ ....+..+|+++...-
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~- 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV- 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence 3333332211 001 10 0 123444443322222 1234567788887753
Q ss_pred CCChhhHHHHHHHHHccCChhHHH-HHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC---------
Q 008022 337 SPNVVAYTCMVKVLCQNNMFHQAH-SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC--------- 406 (581)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------- 406 (581)
+-....|...+..+...|+.++|. .++++.... .|.+...+-..+......|+++.|.++|+.+.....
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 336778888888888889999996 999999875 366777778888888899999999999999875310
Q ss_pred CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 008022 407 LPN------------ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA-GMVVEAFQLLGKMLI 473 (581)
Q Consensus 407 ~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 473 (581)
.|+ ...|...+....+.|+.+.|..+|..+.+.........|...+..-.+. ++++.|.++|+..++
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 132 2357777777778899999999999998751122334444333333343 458999999999998
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022 474 EGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF 551 (581)
Q Consensus 474 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 551 (581)
. .+.+...+..++......|+.+.|..+|+++..... .+ ....|..++..-...|+.+.+.++.+++.+. .|+.
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~-~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS-DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS-STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 7 345677777888888889999999999999998331 11 3457788888788899999999999999885 4555
Q ss_pred HhHHHHHHHH
Q 008022 552 ATWNVLVRSL 561 (581)
Q Consensus 552 ~~~~~l~~~~ 561 (581)
.....+...|
T Consensus 575 ~~~~~f~~ry 584 (679)
T 4e6h_A 575 NKLEEFTNKY 584 (679)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHHh
Confidence 4444454444
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.7e-14 Score=126.05 Aligned_cols=211 Identities=12% Similarity=0.117 Sum_probs=138.8
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022 304 NVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK 383 (581)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 383 (581)
.+..+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 344455556666666777777777777666432 245566666677777777777777777766653 456667777777
Q ss_pred HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022 384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE 463 (581)
Q Consensus 384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (581)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777888888888887776654 3456667777788888888888888888887763 4567777788888888888888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022 464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL 522 (581)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 522 (581)
|...++++.... +.+..++..++.+|...|++++|.+.++++.+ ..| +...+..+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID---IQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence 888888888764 44677888888888888888888888888887 445 34444433
No 56
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=155.35 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 008022 374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ---YECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNT 450 (581)
Q Consensus 374 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (581)
-..+|+++|++|++.|++++|.++|+.|.+ .|+.||..|||.|+.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345677777777777777777777766543 35677777787777777777777788888877777777777778877
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008022 451 ILHGVCRAGMV-VEAFQLLGKMLIEGTKLDAITFNIIIYAYCK 492 (581)
Q Consensus 451 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (581)
++.++++.|+. ++|.+++++|...|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777777763 6777777777777777777777776654433
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=2.6e-13 Score=116.87 Aligned_cols=203 Identities=11% Similarity=0.016 Sum_probs=146.9
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 008022 303 PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFI 382 (581)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 382 (581)
.++..+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...+++..... +.+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3455566666677777777777777777666532 245566667777777777777777777776653 45666777777
Q ss_pred HHhhcC-CChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022 383 KGLCGC-GRVDWAMKLLDQMKQYECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM 460 (581)
Q Consensus 383 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (581)
..+... |++++|...++.+.+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 778888 88888888888777622122 24567777788888888888888888887763 4457777888888888888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+++|...++++.......+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888764215667777777788888888888888888876
No 58
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=4.1e-16 Score=153.31 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=93.5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 008022 165 VSVYNALINGLCKEHKIEEAFWLLCEMVD---RGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSL 241 (581)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (581)
..+||++|.+|++.|++++|.++|.+|.+ .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34688888888888888888888877653 367888888888888888888888888888888888888888888888
Q ss_pred HHHHHccCC-HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 008022 242 LKGYLLGGR-THEASDLWNRMIREGFLPNVVAYSTLIHGLCS 282 (581)
Q Consensus 242 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (581)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888888776 46778888888888888888888877755443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.3e-14 Score=135.97 Aligned_cols=301 Identities=11% Similarity=-0.001 Sum_probs=171.3
Q ss_pred cHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCcHHh
Q 008022 237 SFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN----VVAYSTLIHGLCSNGSMDEAVSVSYQMEEN----SC-PPNVTT 307 (581)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 307 (581)
.+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+.+.... +. +.....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344455555666666666666665554211 2 133445555555666666666655554321 10 111233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhh
Q 008022 308 YSALIDGFAKAGNLLGASQIWNRMISNGCS-PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLC 386 (581)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (581)
+..+...+...|++++|...+++....... ++. .....++..+...+.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHHH
Confidence 444444555555555555555544332100 000 001224444455555
Q ss_pred cCCC--------------------hHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 008022 387 GCGR--------------------VDWAMKLLDQMKQY----ECL-PNITTYNELLDGLLRVNRVKEAFELVTEIEKCG- 440 (581)
Q Consensus 387 ~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 440 (581)
..|+ +++|...+++.... +.. .....+..+...+...|++++|...+++..+..
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555 66666666554321 111 112356677777888888888888888776431
Q ss_pred ---Cc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 008022 441 ---IQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG----TKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE 511 (581)
Q Consensus 441 ---~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 511 (581)
.+ ....++..+...+...|++++|...+++..... ..+ ...++..++..|...|++++|.+.++++.+...
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 01 112367777788888888888888888877541 111 145677888888888999998888888765211
Q ss_pred CCCC----HHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhccCCCC
Q 008022 512 WNPD----IISYTSLLWGICNSGGMQEAFIYLQKMLNE----GICP-NFATWNVLVRSLFSNLGHLG 569 (581)
Q Consensus 512 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 569 (581)
..++ ..++..++..|...|++++|...++++.+. +..+ ...++..+...+...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1111 456778888888889999999888887542 1112 13456667777777776643
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=1.3e-13 Score=114.37 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=126.9
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q 008022 374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILH 453 (581)
Q Consensus 374 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 453 (581)
++.+|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45667777777777788888888887776655 3356677777777888888888888888777653 445666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022 454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM 532 (581)
Q Consensus 454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 532 (581)
.+...++++.|.+.+.+..... +.+...+..++.+|.+.|++++|++.++++.+ +.| +..+|..++.+|...|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS---IKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH---hcchhhhHHHHHHHHHHHCCCH
Confidence 7778888888888888877764 44677777888888888888888888888877 445 566788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 008022 533 QEAFIYLQKMLNEGICPNF 551 (581)
Q Consensus 533 ~~A~~~~~~~~~~~~~~~~ 551 (581)
++|++.|+++++ +.|+.
T Consensus 158 ~~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHHHh--CCccC
Confidence 888888888876 34543
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.2e-14 Score=138.10 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhH
Q 008022 273 YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV----TTYSALIDGFAKAGNLLGASQIWNRMISN----GC-SPNVVAY 343 (581)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 343 (581)
+..+...+...|++++|...++++.+.. +.+. ..+..+...+...|++++|...+++.... +. ......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3344455666666666666666666542 2222 34555556666666666666666655432 00 1112344
Q ss_pred HHHHHHHHccCChhHHHHHHHHHh
Q 008022 344 TCMVKVLCQNNMFHQAHSLIEKMA 367 (581)
Q Consensus 344 ~~l~~~~~~~~~~~~a~~~~~~~~ 367 (581)
..+...+...|++++|...+++..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555555555555555555543
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=4.2e-13 Score=125.83 Aligned_cols=230 Identities=10% Similarity=-0.057 Sum_probs=160.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHhhCC--C----CCChhhHH
Q 008022 311 LIDGFAKAGNLLGASQIWNRMISN----GCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN--C----PPNTVTFN 379 (581)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 379 (581)
....+...|++++|...+++.... +-.+ ...++..+...+...|++++|...+++..... . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555667788888888888887664 1111 23466777778888888888888887765431 0 11234667
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-cccHHHHH
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQYECL-PN----ITTYNELLDGLLRVNRVKEAFELVTEIEKC----GI-QLNIVTYN 449 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 449 (581)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7778888888888888888877542100 11 236777888888889999999888887762 22 34466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022 450 TILHGVCRAGMVVEAFQLLGKMLIE----GTKLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP-DIISYTS 521 (581)
Q Consensus 450 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p-~~~~~~~ 521 (581)
.+...+.+.|++++|.+.+++.+.. +.+.....+..+...|...|+ +++|+.++++... .| ....+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~----~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML----YADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC----HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC----HHHHHHHHHH
Confidence 8888888899999999888888754 111122335667788888888 6777777766532 33 3456778
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 008022 522 LLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
++..|...|++++|..+++++.+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888889999999998888864
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=4.6e-14 Score=134.05 Aligned_cols=279 Identities=13% Similarity=0.056 Sum_probs=175.8
Q ss_pred cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCcH
Q 008022 235 IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV----VAYSTLIHGLCSNGSMDEAVSVSYQMEEN----S-CPPNV 305 (581)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 305 (581)
...+..+...+...|++++|+..|+++.+.+.. +. ..+..+...|...|++++|...+++.... + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344455677888999999999999999887432 33 46788888999999999999999987653 1 12345
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCChhhHHHHHHHHHccCC-----------------hhHHHHHH
Q 008022 306 TTYSALIDGFAKAGNLLGASQIWNRMISNG----C-SPNVVAYTCMVKVLCQNNM-----------------FHQAHSLI 363 (581)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 363 (581)
..+..+...+...|++++|...+++..... - .....++..+...+...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678888899999999999999999876531 0 1122345555566666666 44444444
Q ss_pred HHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-
Q 008022 364 EKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ- 442 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 442 (581)
++... +..... ........+..+...+...|++++|...+++..+....
T Consensus 207 ~~al~----------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 207 QENLK----------------------------LMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHH----------------------------HHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------------HHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 44322 111110 00111234555566666666666666666665542100
Q ss_pred cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 008022 443 LN----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-----LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN 513 (581)
Q Consensus 443 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 513 (581)
++ ..++..+...+...|++++|...++++...... ....++..++.+|...|++++|.+.++++.....-.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01 225566666777777777777777776653100 114456677777777777777777777765511100
Q ss_pred C----CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 514 P----DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 514 p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+ ...++..++..|...|++++|..+++++.+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 133666777777778888888888777765
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=6.3e-14 Score=132.92 Aligned_cols=274 Identities=11% Similarity=-0.007 Sum_probs=186.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHhhC----CC-CCCh
Q 008022 305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN----VVAYTCMVKVLCQNNMFHQAHSLIEKMAFE----NC-PPNT 375 (581)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 375 (581)
...+......+...|++++|...|+++....+. + ...+..+...+...|++++|...+++.... +. +...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334444555555566666666666655554221 2 134455555666666666666666554321 10 1124
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCC--------------------HHHHH
Q 008022 376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC-----LPNITTYNELLDGLLRVNR--------------------VKEAF 430 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~ 430 (581)
.++..+...+...|++++|...+++..+... .....++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4566677777788888888887777644210 0113467788888889999 99999
Q ss_pred HHHHHHHHc----CC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHHhcCCHHHHH
Q 008022 431 ELVTEIEKC----GI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT-KLD----AITFNIIIYAYCKQGKVNNAI 500 (581)
Q Consensus 431 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~ 500 (581)
+.+++..+. +. +....++..+...+...|++++|...+++...... .++ ..++..++.+|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999876542 11 12245678888899999999999999999886411 111 337888999999999999999
Q ss_pred HHHHHHhcCCCCCCC----HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhccCCCChH
Q 008022 501 QLLDRIRGGGEWNPD----IISYTSLLWGICNSGGMQEAFIYLQKMLNEGI-CPN----FATWNVLVRSLFSNLGHLGPV 571 (581)
Q Consensus 501 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~ 571 (581)
..++++.+...-.++ ..++..++..|...|++++|...++++.+..- .++ ...+..+...+...|++++|+
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998752111111 55788999999999999999999999865311 111 456778888999999999999
Q ss_pred HHHHHHhh
Q 008022 572 YILDDIMA 579 (581)
Q Consensus 572 ~~~~~~~~ 579 (581)
+.+++.++
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=3.1e-12 Score=115.68 Aligned_cols=219 Identities=11% Similarity=0.012 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------ccCCh-------hHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 008022 322 LGASQIWNRMISNGCSPNVVAYTCMVKVLC-------QNNMF-------HQAHSLIEKMAFENCPPNTVTFNTFIKGLCG 387 (581)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (581)
+.|..+|+++....+ .+...|..++..+. ..|++ ++|..+|++....-.|.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 445555555555321 24445555544443 23554 6677777766653124455566666666667
Q ss_pred CCChHHHHHHHHHHhhCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-hcCCHHHH
Q 008022 388 CGRVDWAMKLLDQMKQYECLPN-IT-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC-RAGMVVEA 464 (581)
Q Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 464 (581)
.|++++|..+|+++.+.. |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777766643 32 22 56666666667777777777777776643 333444433322221 25777777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 465 FQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
.++|+++++.. +.+...|..++..+.+.|++++|+.+|+++.....+.| ....|..++..+...|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776653 33566677777777777777777777777776323344 3446666666677777777777777777
Q ss_pred HHc
Q 008022 543 LNE 545 (581)
Q Consensus 543 ~~~ 545 (581)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=6.5e-14 Score=129.07 Aligned_cols=133 Identities=13% Similarity=-0.028 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGT-----KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----II 517 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 517 (581)
++..+...+...|++++|.+.+++...... .....++..++..+...|++++|.+.++++.+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 444555555556666666666555543210 001224555555566666666666666555431100011 33
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKMLNEG----ICP-NFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
++..++..+...|++++|...++++++.. ..+ ...++..+...+...|++++|.+.+++.++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45555556666666666666665554320 000 022444555555666666666666665543
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.5e-12 Score=117.67 Aligned_cols=216 Identities=8% Similarity=-0.026 Sum_probs=176.7
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHhh-------cCCCh-------HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 008022 357 HQAHSLIEKMAFENCPPNTVTFNTFIKGLC-------GCGRV-------DWAMKLLDQMKQYECLPNITTYNELLDGLLR 422 (581)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (581)
++|..+|++..... |.++..|..++..+. ..|++ ++|..+|++..+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988764 678888888887775 35886 8999999999883223456689999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcc-cHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-hcCCHHHH
Q 008022 423 VNRVKEAFELVTEIEKCGIQL-NIV-TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC-KQGKVNNA 499 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 499 (581)
.|++++|.++|+++.+. .| +.. .|..++..+.+.|++++|.++|+++++.+ +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985 44 344 88999999999999999999999999875 445666655544433 37999999
Q ss_pred HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC--CHHhHHHHHHHHHhccCCCChHHHHH
Q 008022 500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG-ICP--NFATWNVLVRSLFSNLGHLGPVYILD 575 (581)
Q Consensus 500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 575 (581)
.++|+++.+ ..| +...|..++..+.+.|++++|+.+|+++++.. ++| ....|..++......|+.++|..+++
T Consensus 189 ~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLK---KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHH---HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHH---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988 345 67889999999999999999999999999852 455 35678888888888999999999999
Q ss_pred HHhh
Q 008022 576 DIMA 579 (581)
Q Consensus 576 ~~~~ 579 (581)
++++
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=7.4e-13 Score=109.80 Aligned_cols=171 Identities=13% Similarity=0.070 Sum_probs=131.9
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022 339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLD 418 (581)
Q Consensus 339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 418 (581)
++.+|..+...+...|++++|+..|++..+.. |.+...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45667777777777778888888777777664 5667777778888888888888888888776654 334556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 498 (581)
.+...++++.+...+....+.. +.+...+..+...+.+.|++++|++.+++.++.. +.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7788888888888888887763 5567778888888888888888888888888865 4577788888888888899999
Q ss_pred HHHHHHHHhcCCCCCCCH
Q 008022 499 AIQLLDRIRGGGEWNPDI 516 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p~~ 516 (581)
|++.|+++.+ +.|+.
T Consensus 160 A~~~~~~al~---~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE---KEEKK 174 (184)
T ss_dssp HHHHHHHHHH---TTHHH
T ss_pred HHHHHHHHHh---CCccC
Confidence 9999988887 45643
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=9.7e-14 Score=133.27 Aligned_cols=214 Identities=10% Similarity=-0.031 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh-hHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 008022 320 NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMF-HQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLL 398 (581)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 398 (581)
.++.+...++...... +.+...+..+...+...|++ ++|...|++..... |.+...+..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666666655442 23566777777778888888 88888888877764 556777788888888888888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc--------CCH
Q 008022 399 DQMKQYECLPNITTYNELLDGLLRV---------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA--------GMV 461 (581)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 461 (581)
++..+.. |+...+..+...+... |++++|++.+++..+.. +.+...+..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8877764 5566777777777777 78888888888877763 44567777777777777 778
Q ss_pred HHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHH
Q 008022 462 VEAFQLLGKMLIEGTK---LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFI 537 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 537 (581)
++|.+.|++++... + .+...+..++.+|...|++++|++.|+++.+ +.| +...+..+..++...|++++|++
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887753 3 4677778888888888888888888888777 445 45567777777777777777776
Q ss_pred HHHHH
Q 008022 538 YLQKM 542 (581)
Q Consensus 538 ~~~~~ 542 (581)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 65444
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=1.1e-13 Score=127.62 Aligned_cols=155 Identities=13% Similarity=0.027 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhC----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-cccHHHHHHHHHHHHhcCC
Q 008022 391 VDWAMKLLDQMKQY----E-CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GI-QLNIVTYNTILHGVCRAGM 460 (581)
Q Consensus 391 ~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 460 (581)
+++|...+++.... + .......+..+...+...|++++|...+++..+. +. .....++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 66666666554321 1 0112336677778888899999999998887643 11 1113367778888899999
Q ss_pred HHHHHHHHHHHHHCCCC-c----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----CHHhHHHHHHHHHccCC
Q 008022 461 VVEAFQLLGKMLIEGTK-L----DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP----DIISYTSLLWGICNSGG 531 (581)
Q Consensus 461 ~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~ 531 (581)
+++|...+++....... . ...++..++.+|...|++++|...++++.+.....+ ...++..++..|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999988754111 1 155678888999999999999999998865211111 24477889999999999
Q ss_pred HHHHHHHHHHHHHc
Q 008022 532 MQEAFIYLQKMLNE 545 (581)
Q Consensus 532 ~~~A~~~~~~~~~~ 545 (581)
+++|...++++.+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999873
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=2.7e-13 Score=130.16 Aligned_cols=212 Identities=9% Similarity=-0.028 Sum_probs=137.0
Q ss_pred hhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 008022 286 MDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNL-LGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIE 364 (581)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 364 (581)
+++++..+...... .+.+...+..+...+...|++ ++|+..|++..+..+. +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554443 234566666677777777777 7777777776665322 45566667777777777777777777
Q ss_pred HHhhCCCCCChhhHHHHHHHhhcC---------CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc--------CCHH
Q 008022 365 KMAFENCPPNTVTFNTFIKGLCGC---------GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV--------NRVK 427 (581)
Q Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 427 (581)
+..... |+...+..+..++... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 776653 4456666667777776 77777777777766654 33455666666666666 6677
Q ss_pred HHHHHHHHHHHcCCc---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022 428 EAFELVTEIEKCGIQ---LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLD 504 (581)
Q Consensus 428 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (581)
+|++.|++..+.. + .+...+..+..+|...|++++|.+.|+++.... +.+...+..+..++...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777776653 2 356666777777777777777777777776654 3355566666777777777766666443
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=9.5e-13 Score=123.45 Aligned_cols=231 Identities=9% Similarity=-0.012 Sum_probs=177.0
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCC--CCC---ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC------CCChhhHH
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFEN--CPP---NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC------LPNITTYN 414 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 414 (581)
....+...|++++|...+++....- .+. ...++..+...|...|+++.|...+++..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5566788999999999999987641 111 346788899999999999999999998854211 11234678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHH
Q 008022 415 ELLDGLLRVNRVKEAFELVTEIEKC----GIQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GT-KLDAITFN 484 (581)
Q Consensus 415 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 484 (581)
.+...|...|++++|.+.+++..+. +.+ ....++..+...|...|++++|.+.+++.+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988753 111 11247888999999999999999999999873 22 34567789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCC--CC-CHHhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-HHhHHHH
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGGGEW--NP-DIISYTSLLWGICNSGG---MQEAFIYLQKMLNEGICPN-FATWNVL 557 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l 557 (581)
.++.+|...|++++|.+.++++.+.... .| ....+..+...+...|+ +++|+.++++.. ..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 9999999999999999999998762111 12 12335678888899999 777888777762 3333 4567788
Q ss_pred HHHHHhccCCCChHHHHHHHhh
Q 008022 558 VRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 558 ~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
...+...|++++|.+.+++.++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998765
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=4e-13 Score=122.17 Aligned_cols=236 Identities=12% Similarity=0.004 Sum_probs=125.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC------C-C
Q 008022 306 TTYSALIDGFAKAGNLLGASQIWNRMISN-------GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE------N-C 371 (581)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 371 (581)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++.... + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444455555555555555444431 11112233444455555555555555555554332 1 1
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 008022 372 PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY------EC-LPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----- 439 (581)
Q Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 439 (581)
+.....+..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.+.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 223445556666666666666666666665432 11 122345666677777777777777777776653
Q ss_pred -C-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCc-------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008022 440 -G-IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG-------TKL-------DAITFNIIIYAYCKQGKVNNAIQLL 503 (581)
Q Consensus 440 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~ 503 (581)
+ .+....++..+...+...|++++|.+.++++.... ..+ ....+......+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1 12234456677777777888888888887777531 011 1122233334444556667777777
Q ss_pred HHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 504 DRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 504 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+.... ..| ...++..++.+|...|++++|.++++++++
T Consensus 268 ~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77665 234 566788888888889999999999888875
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.2e-12 Score=119.01 Aligned_cols=239 Identities=14% Similarity=-0.017 Sum_probs=165.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHhhC-------CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC------C-
Q 008022 340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFE-------NCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY------E- 405 (581)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 405 (581)
..++..+...+...|++++|..+++++... ..+.....+..+...+...|++++|...+++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888899999999999999998763 22445667788889999999999999999988653 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 008022 406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC------GI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE---- 474 (581)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 474 (581)
.+.....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|.++++++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1223457788888999999999999999988754 11 234556778888899999999999999999875
Q ss_pred --CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCCCH-H------hHHHHHHHHHccCCHHHHHHH
Q 008022 475 --GTKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG------EWNPDI-I------SYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 475 --~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~p~~-~------~~~~l~~~~~~~g~~~~A~~~ 538 (581)
+..| ...++..++.+|...|++++|.+.++++.+.. ...+.. . .+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 34568888999999999999999999987511 111211 1 122223333445556666667
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 539 LQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
+++.... .+....++..+..++...|++++|.+.+++.++
T Consensus 267 ~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7776653 123456788899999999999999999998875
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=1.1e-11 Score=106.75 Aligned_cols=206 Identities=12% Similarity=-0.006 Sum_probs=145.7
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 008022 338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELL 417 (581)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 417 (581)
.|+..+......+...|++++|...|++......+++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35667777888888888999999988888877533677777778888888888888888888888765 33556777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHH
Q 008022 418 DGLLRVNRVKEAFELVTEIEKCGIQLNI-------VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNIIIY 488 (581)
Q Consensus 418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 488 (581)
..+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.++++++.. +. +...+..++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 88888888888888888888763 3344 456777777888888888888888888753 33 3567777777
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 008022 489 AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVL 557 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 557 (581)
+|...| ...++++..... .+...+.... ....+.+++|+..++++.+. .|+......+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~--~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~ 219 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS--SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQM 219 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT--TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhccc--CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 776544 344555555221 2333333332 34456689999999999884 5665443333
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=3.6e-12 Score=127.08 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=80.7
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022 375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG 454 (581)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (581)
...++.+..++...|++++|++.|++..+.. +.+...+..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445555555555555555555555554433 2233444555555555555555555555554432 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHH
Q 008022 455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQ 533 (581)
Q Consensus 455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 533 (581)
+...|++++|++.|+++++.. +.+...+..++.+|...|++++|++.|+++.+ +.| +...+..++.+|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccHH
Confidence 555555555555555555442 22344455555555555555555555555544 334 3444555555555555555
Q ss_pred HHHHHHHHHHH
Q 008022 534 EAFIYLQKMLN 544 (581)
Q Consensus 534 ~A~~~~~~~~~ 544 (581)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1.3e-11 Score=115.44 Aligned_cols=230 Identities=12% Similarity=-0.001 Sum_probs=143.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCChhHHHHHHHHHhhCC--CC----CChhhHH
Q 008022 311 LIDGFAKAGNLLGASQIWNRMISNGC-SPN----VVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN--CP----PNTVTFN 379 (581)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 379 (581)
....+...|++++|...+++...... .++ ..++..+...+...|+++.|...+++..... .. ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888877765411 112 2356666777777788887777777765421 01 1234566
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCcccHHHHHH
Q 008022 380 TFIKGLCGCGRVDWAMKLLDQMKQY----ECL-PNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GIQLNIVTYNT 450 (581)
Q Consensus 380 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 450 (581)
.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|.+.+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 6777777778888887777776442 111 11235666777777788888888887776651 22333566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEG----TKLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP-DIISYTSL 522 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p-~~~~~~~l 522 (581)
+...+.+.|++++|...+++..... .+.....+..+...|...|+ +.+|+..+++... .| ....+..+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~----~~~~~~~~~~l 342 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL----HAYIEACARSA 342 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC----HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC----hhHHHHHHHHH
Confidence 7777778888888888887777642 11123345555566666777 6666666665322 23 33455677
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 008022 523 LWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+..|...|++++|...|+++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788888888888777754
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1.3e-11 Score=115.29 Aligned_cols=230 Identities=10% Similarity=-0.018 Sum_probs=174.8
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCC--CC---CChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC-----CC-ChhhHH
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFEN--CP---PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC-----LP-NITTYN 414 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~ 414 (581)
....+...|++++|...+++..... .+ ....++..+...|...|+++.|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4455778999999999999987541 11 1245678889999999999999999998754211 11 234678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHH
Q 008022 415 ELLDGLLRVNRVKEAFELVTEIEKC----GIQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLI-----EGTKLDAITFN 484 (581)
Q Consensus 415 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 484 (581)
.+...|...|++++|.+.+++..+. +.+ ....++..+..+|...|++++|.+.+++.+. .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8899999999999999999987753 111 1235678889999999999999999999987 43 33477889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCC-HHhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-HHhHHHH
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGGGEW--NPD-IISYTSLLWGICNSGG---MQEAFIYLQKMLNEGICPN-FATWNVL 557 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l 557 (581)
.++.+|.+.|++++|...++++.+.... .|. ...+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 9999999999999999999998773322 222 3345666667778888 77888877763 22333 3466778
Q ss_pred HHHHHhccCCCChHHHHHHHhh
Q 008022 558 VRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 558 ~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
...+...|++++|.+.+++.++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999998765
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=5.1e-12 Score=126.04 Aligned_cols=165 Identities=10% Similarity=0.005 Sum_probs=117.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 008022 340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDG 419 (581)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (581)
...++.+..++.+.|++++|+..|++..+.. |.+...+..+..+|.+.|++++|+..|++..+.+ +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567777777777777777777777777664 5566777777777777777777777777776654 2345667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022 420 LLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA 499 (581)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 499 (581)
+...|++++|++.|++..+.. +.+...+..+...+...|++++|++.|+++++.. +.+...+..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777777653 4456677777777777777777777777777754 34566777777777777777777
Q ss_pred HHHHHHHhc
Q 008022 500 IQLLDRIRG 508 (581)
Q Consensus 500 ~~~~~~~~~ 508 (581)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777766
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=1.9e-11 Score=101.38 Aligned_cols=164 Identities=16% Similarity=0.064 Sum_probs=116.7
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 008022 376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV 455 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (581)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555666667777777777777766543 3355566677777777777777777777777653 44566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHH
Q 008022 456 CRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQE 534 (581)
Q Consensus 456 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 534 (581)
...|++++|.+.++++.... +.+...+..++.++...|++++|.+.++++.+. .| +..++..++..+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCHHH
Confidence 77788888888887777664 446677777778888888888888888887762 34 56677777888888888888
Q ss_pred HHHHHHHHHHc
Q 008022 535 AFIYLQKMLNE 545 (581)
Q Consensus 535 A~~~~~~~~~~ 545 (581)
|...++++.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888877653
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=7.9e-11 Score=109.98 Aligned_cols=272 Identities=14% Similarity=-0.002 Sum_probs=187.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh----hhHH
Q 008022 274 STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVT----TYSALIDGFAKAGNLLGASQIWNRMISNGCS-PNV----VAYT 344 (581)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~ 344 (581)
......+...|++++|...+.+........+.. .+..+...+...|+++.|...+++....... ++. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456778899999999999987754222322 4556667788899999999999887654211 122 1245
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC--C--ChhhH
Q 008022 345 CMVKVLCQNNMFHQAHSLIEKMAFE----NCP--P-NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL--P--NITTY 413 (581)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~ 413 (581)
.+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... + ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6677788899999999999887653 211 2 2345566778888999999999999887653211 1 22456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcc-cHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHH
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQL-NIVTYN-----TILHGVCRAGMVVEAFQLLGKMLIEGTKL---DAITFN 484 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 484 (581)
..+...+...|++++|...+++.......+ ....+. ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 677788888999999999999876541111 111111 23344678899999999998887643221 133566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCH-HhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGG---GEWNPDI-ISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.++..+...|++++|...++++... .+..++. ..+..+..++...|+.++|...++++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7788899999999999999887541 1111122 36667788888999999999999998763
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1.3e-11 Score=102.53 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456777888999999999999999988763 5578888999999999999999999999999874 55788899999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCC
Q 008022 491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLG 569 (581)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 569 (581)
...|++++|.+.++++... .| +...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999883 34 67788999999999999999999999998753 4457788889999999999999
Q ss_pred hHHHHHHHhh
Q 008022 570 PVYILDDIMA 579 (581)
Q Consensus 570 a~~~~~~~~~ 579 (581)
|.+.++++++
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=5.9e-11 Score=102.12 Aligned_cols=207 Identities=8% Similarity=-0.058 Sum_probs=161.5
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 008022 302 PPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTF 381 (581)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 381 (581)
+.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..... |.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346788889999999999999999999999987654677788889999999999999999999999875 6678889999
Q ss_pred HHHhhcCCChHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc--cHHHHHHHH
Q 008022 382 IKGLCGCGRVDWAMKLLDQMKQYECLPNI-------TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQL--NIVTYNTIL 452 (581)
Q Consensus 382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 452 (581)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.++++.+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999998765 2334 457778888899999999999999999863 33 356777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHH
Q 008022 453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSL 522 (581)
Q Consensus 453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 522 (581)
.++...| ...++++...+ ..+...+.... ....+.+++|+..++++.+ +.|+ ..+...+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~---l~p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT---LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh---cCCCCHHHHHHH
Confidence 7776544 44556665553 33444444333 3445779999999999998 5674 4344333
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=1.4e-10 Score=108.37 Aligned_cols=298 Identities=12% Similarity=0.018 Sum_probs=209.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCc----HHhHH
Q 008022 239 TSLLKGYLLGGRTHEASDLWNRMIREGFLPNVV----AYSTLIHGLCSNGSMDEAVSVSYQMEENSC-PPN----VTTYS 309 (581)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 309 (581)
......+...|++++|...+++........+.. .+..+...+...|++++|...+.+...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556778999999999999988764332332 456667788889999999999998765310 112 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCC----ChhhH
Q 008022 310 ALIDGFAKAGNLLGASQIWNRMISN----GCS--P-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPP----NTVTF 378 (581)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 378 (581)
.+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........ ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778889999999999999987653 211 2 23355667888999999999999999987643211 23456
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCcc---cHHHHH
Q 008022 379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI-TTYN-----ELLDGLLRVNRVKEAFELVTEIEKCGIQL---NIVTYN 449 (581)
Q Consensus 379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 449 (581)
..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 67788899999999999999988653211211 1221 23344778999999999999887643211 133566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022 450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLD-----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW 524 (581)
Q Consensus 450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 524 (581)
.+...+...|++++|...+++......... ..++..+..++...|++++|...++++.. +.+.. ....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~---~~~~~----g~~~ 330 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK---LANRT----GFIS 330 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHHH----CCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---Hhccc----cHHH
Confidence 778889999999999999999987532211 13566778889999999999999999987 32221 2233
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 008022 525 GICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 445555 6777778888764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.36 E-value=8.8e-12 Score=111.46 Aligned_cols=229 Identities=16% Similarity=-0.047 Sum_probs=155.8
Q ss_pred HccCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC------C-CCCChhhHHHH
Q 008022 351 CQNNMFHQAHSLIEKMAF-------ENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY------E-CLPNITTYNEL 416 (581)
Q Consensus 351 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 416 (581)
...|++++|...+++... ...+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 446677777777666544 222334667888899999999999999999988653 1 12234578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCcCHHH
Q 008022 417 LDGLLRVNRVKEAFELVTEIEKC------G-IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE------G-TKLDAIT 482 (581)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 482 (581)
...+...|++++|.+.++++.+. . .+....++..+...+...|++++|...++++... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988754 1 1334667888888999999999999999999975 1 1223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCCC-CHHhHHHHHHHHHccCCH------HHHHHHHHHHHHcCCCC
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRGG------GEWNP-DIISYTSLLWGICNSGGM------QEAFIYLQKMLNEGICP 549 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~p-~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~ 549 (581)
+..++.+|...|++++|.+.++++.+. ....+ ....|..+...+...+.. ..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998762 11223 223444444444433332 222222222211 0112
Q ss_pred CHHhHHHHHHHHHhccCCCChHHHHHHHhhc
Q 008022 550 NFATWNVLVRSLFSNLGHLGPVYILDDIMAN 580 (581)
Q Consensus 550 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 580 (581)
....+..+...+...|++++|.+++++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2456778888999999999999999998864
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=2.7e-09 Score=92.94 Aligned_cols=178 Identities=10% Similarity=-0.008 Sum_probs=97.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHhhcCCChHHHHHHHHHHh
Q 008022 324 ASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC-PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMK 402 (581)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 402 (581)
+...+++....+ .++...+..+..++...|++++|+.++.+....+. ..+...+..++..+.+.|+++.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23444444556666666777777777766655431 1345555566666667777777777776665
Q ss_pred hCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 403 QYECLP-----NITTYNELLDG--LLRVN--RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI 473 (581)
Q Consensus 403 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 473 (581)
+.. | +..+...++.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 532 3 23344444444 22223 666777777776543 33322223333356666777777776665543
Q ss_pred CC---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 474 EG---------TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 474 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.. -+.++.++..++......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 20 02345555455545555555 66666666666
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=1.2e-10 Score=104.13 Aligned_cols=193 Identities=13% Similarity=-0.016 Sum_probs=129.8
Q ss_pred HHHccCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC---CC--ChhhHHHHHH
Q 008022 349 VLCQNNMFHQAHSLIEKMAFE----NCPP-NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC---LP--NITTYNELLD 418 (581)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 418 (581)
.|...|++++|...+++.... +.++ ...++..+..+|...|++++|+..+++..+... .+ ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666655432 1111 134666777777777777777777776644210 01 1346777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCcc-c----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHH
Q 008022 419 GLLRV-NRVKEAFELVTEIEKCGIQL-N----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA------ITFNII 486 (581)
Q Consensus 419 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 486 (581)
.|... |++++|+..|++..+..... + ..++..+...+...|++++|+..++++......... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 99999999999887641110 1 356788889999999999999999999986433221 257788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH------hHHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 008022 487 IYAYCKQGKVNNAIQLLDRIRGGGEWNPDII------SYTSLLWGIC--NSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 544 (581)
+.++...|++++|+..+++..+ +.|+.. .+..++..+. ..+++++|+..|+++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 8899999999999999999987 445321 3444555554 45778899998888764
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=4e-11 Score=107.17 Aligned_cols=226 Identities=12% Similarity=-0.024 Sum_probs=161.3
Q ss_pred HhcCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC------C-CCCChhhHHHH
Q 008022 316 AKAGNLLGASQIWNRMISN-------GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE------N-CPPNTVTFNTF 381 (581)
Q Consensus 316 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 381 (581)
...|+++.|...+++..+. ..+....++..+...+...|++++|...+++.... + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766552 21224557888899999999999999999998754 1 13345678889
Q ss_pred HHHhhcCCChHHHHHHHHHHhhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CcccHHH
Q 008022 382 IKGLCGCGRVDWAMKLLDQMKQY------E-CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC------G-IQLNIVT 447 (581)
Q Consensus 382 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 447 (581)
...+...|++++|...+++.... . .+.....+..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998653 1 1233557888899999999999999999998764 1 1234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHHHHHHHHHHHhcCCHH------HHHHHHHHHhcCCCCC
Q 008022 448 YNTILHGVCRAGMVVEAFQLLGKMLIEG--------TKLDAITFNIIIYAYCKQGKVN------NAIQLLDRIRGGGEWN 513 (581)
Q Consensus 448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~ 513 (581)
+..+...+...|++++|..+++++.... .......+..+...+...+... .+...++.... ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 248 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---DS 248 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---CC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---CC
Confidence 8889999999999999999999999741 1122334444444444444333 33333332222 22
Q ss_pred C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 514 P-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 514 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
| ...++..++..|...|++++|..+++++++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 455788999999999999999999999875
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=1.2e-10 Score=102.56 Aligned_cols=190 Identities=7% Similarity=-0.053 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-CC-hhhHH
Q 008022 340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN---TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-PN-ITTYN 414 (581)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~ 414 (581)
...+..+...+.+.|++++|...|+++.... |.+ ...+..+..++...|++++|...|+.+.+.... |. ...+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444445555555566666666666555542 222 344455555555555555555555555543210 11 22344
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008022 415 ELLDGLLR--------VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNII 486 (581)
Q Consensus 415 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 486 (581)
.+..++.. .|++++|+..|+++.+.. +.+......+.. +..... .-...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHHHH
Confidence 44444554 555555555555555432 111111111100 000000 000113567
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCCCH
Q 008022 487 IYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS----------GGMQEAFIYLQKMLNEGICPNF 551 (581)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~ 551 (581)
+.+|...|++++|+..|+++.+..+-.| ....+..++.+|... |++++|...|+++++. .|+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 8888889999999999988887333222 245677788888765 8888999999988874 4543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=3.2e-09 Score=92.46 Aligned_cols=187 Identities=7% Similarity=-0.070 Sum_probs=138.6
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 359 AHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC-LPNITTYNELLDGLLRVNRVKEAFELVTEIE 437 (581)
Q Consensus 359 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 437 (581)
|+..+++....+ +++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677888877665 45566667888899999999999999999877653 2356677888999999999999999999998
Q ss_pred HcCCcc-----cHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 438 KCGIQL-----NIVTYNTILHGVC--RAG--MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 438 ~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+. .| +..+...++.++. ..| ++++|..+|+++... .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 55 3555555665533 334 899999999998765 34433333444489999999999999997765
Q ss_pred CCC----C---CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 008022 509 GGE----W---NP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATW 554 (581)
Q Consensus 509 ~~~----~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 554 (581)
..+ . .| ++.++..++......|+ +|.++++++.+ ..|+....
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHH
Confidence 210 0 24 66777677766666786 89999999998 46775543
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.26 E-value=2.9e-10 Score=95.89 Aligned_cols=136 Identities=12% Similarity=-0.007 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008022 415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG 494 (581)
Q Consensus 415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 494 (581)
.+..++...|++++|+..|++..+.. |.+...+..+...+...|++++|...|++++... +.+..++..++.+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 37788888999999999999988874 5577888888889999999999999999998875 457788888888887665
Q ss_pred C--HHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 008022 495 K--VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVL 557 (581)
Q Consensus 495 ~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 557 (581)
+ .+.+...++++.. ..|....+...+.++...|++++|+..|+++++ +.|+......+
T Consensus 137 ~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 4 4455666666554 223333455567777788999999999999987 56776554433
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=1.5e-10 Score=103.55 Aligned_cols=206 Identities=12% Similarity=-0.069 Sum_probs=148.5
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCCHHHH
Q 008022 355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY----ECLPN-ITTYNELLDGLLRVNRVKEA 429 (581)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 429 (581)
++++|...+++. ...|...|++++|...|.+..+. +-++. ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888887776 34577889999999999887542 21222 45788999999999999999
Q ss_pred HHHHHHHHHc----CCcc-cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCc-C----HHHHHHHHHHHHhcCCHHH
Q 008022 430 FELVTEIEKC----GIQL-NIVTYNTILHGVCRA-GMVVEAFQLLGKMLIEGTKL-D----AITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 430 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 498 (581)
+..+++..+. |-.. ...++..+...|... |++++|+..+++.+...... + ..++..++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988753 2111 145788889999996 99999999999998752111 1 4568899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCH-----HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH------hHHHHHHHHH--hcc
Q 008022 499 AIQLLDRIRGGGEWNPDI-----ISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA------TWNVLVRSLF--SNL 565 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g 565 (581)
|+..++++.+..+-.+.. ..+..++.++...|++++|...|++.++ +.|+.. .+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999999833222221 1577888899999999999999999986 345422 2344455553 234
Q ss_pred CCCChHHHHHHH
Q 008022 566 GHLGPVYILDDI 577 (581)
Q Consensus 566 ~~~~a~~~~~~~ 577 (581)
++++|++.++++
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 455666666544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=2.6e-10 Score=114.57 Aligned_cols=169 Identities=10% Similarity=-0.064 Sum_probs=91.2
Q ss_pred hcCCChHHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 008022 386 CGCGRVDWAMKLLDQMK--------QYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR 457 (581)
Q Consensus 386 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (581)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44556666666665555 222 2234455555555666666666666666655542 3344555555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHH
Q 008022 458 AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAF 536 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 536 (581)
.|++++|.+.|+++++.. +.+...+..++.+|.+.|++++ ++.|+++.+ +.| +...|..++.++...|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665543 2345555556666666666666 666666555 334 4445556666666666666666
Q ss_pred HHHHHHHHcCCCCC-HHhHHHHHHHHHh
Q 008022 537 IYLQKMLNEGICPN-FATWNVLVRSLFS 563 (581)
Q Consensus 537 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 563 (581)
+.|+++++ +.|+ ...+..+..++..
T Consensus 555 ~~~~~al~--l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 555 RTLDEVPP--TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTSCT--TSTTHHHHHHHHHHHTC-
T ss_pred HHHHhhcc--cCcccHHHHHHHHHHHHc
Confidence 66666554 2344 2334444444433
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.22 E-value=7.3e-10 Score=93.39 Aligned_cols=138 Identities=9% Similarity=-0.078 Sum_probs=105.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022 379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA 458 (581)
Q Consensus 379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (581)
..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+++.+.. |.+...+..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 448888999999999999999998865 4467788899999999999999999999999874 55678888888887665
Q ss_pred CC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHH
Q 008022 459 GM--VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLL 523 (581)
Q Consensus 459 ~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 523 (581)
|+ .+.+...+..... ..|....+...+.++...|++++|+..|+++.+ +.|+......+.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 54 4455666666542 233344556667788889999999999999998 678766544443
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=1.1e-09 Score=85.14 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC 491 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (581)
.+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566777777888888888888877653 4456677777777888888888888888887764 446667777888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 492 KQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
..|++++|.+.++++.. ..| +...+..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888776 234 5667777888888888888888888888763
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=5.4e-10 Score=98.31 Aligned_cols=188 Identities=12% Similarity=-0.012 Sum_probs=139.1
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHhhCCC--CCChh
Q 008022 302 PPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN---VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC--PPNTV 376 (581)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 376 (581)
+.++..+......+.+.|++++|...|+++....+. + ...+..+..++...|++++|...|++...... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456778888888999999999999999999887432 3 56778888999999999999999999988631 12345
Q ss_pred hHHHHHHHhhc--------CCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHH
Q 008022 377 TFNTFIKGLCG--------CGRVDWAMKLLDQMKQYECLPNI-TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVT 447 (581)
Q Consensus 377 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 447 (581)
.+..+..++.. .|++++|...|+++.+.. |+. .....+. .+..+... ....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHH
Confidence 67777888888 999999999999998754 433 2222211 11111110 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCC
Q 008022 448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNIIIYAYCKQ----------GKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 510 (581)
+..+...|...|++++|+..+++++...+.. ....+..++.+|... |++++|+..++++.+..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 5567778889999999999999998764221 345778888888866 88899999999998833
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=1.3e-10 Score=91.92 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 498 (581)
.+...|++++|+..++...... +.+...+..+...|.+.|++++|++.++++++.. +.+..+|..++.+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3344555666666666555431 2223334455566666666666666666666653 3355666666666666666666
Q ss_pred HHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCC-HHhHHHHHHHHHhcc
Q 008022 499 AIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIY-LQKMLNEGICPN-FATWNVLVRSLFSNL 565 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~g 565 (581)
|+..|+++.+ +.| ++.+|..++..|.+.|++++|.+. ++++++ +.|+ +..+......+...|
T Consensus 84 A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 6666666666 345 455666666666666666554443 456655 2343 334444444444444
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=7.8e-11 Score=93.23 Aligned_cols=145 Identities=7% Similarity=-0.109 Sum_probs=117.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022 381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM 460 (581)
Q Consensus 381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (581)
|...+...|++++|+..++...... +.+...+..+...|...|++++|++.|++.++.. +.+...|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4566777899999999999887643 2234566788999999999999999999999874 5678899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHhcCCCCCC-CHHhHHHHHHHHHccCC
Q 008022 461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQL-LDRIRGGGEWNP-DIISYTSLLWGICNSGG 531 (581)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 531 (581)
+++|+..|+++++.. +.+..++..++.+|.+.|++++|.+. ++++.+ +.| ++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~---l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK---LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999875 45788999999999999999887665 588888 567 66777777777777664
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=3.1e-10 Score=114.01 Aligned_cols=173 Identities=11% Similarity=-0.060 Sum_probs=145.1
Q ss_pred HccCChhHHHHHHHHHh--------hCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 008022 351 CQNNMFHQAHSLIEKMA--------FENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR 422 (581)
Q Consensus 351 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (581)
...|++++|+..+++.. ... +.+...+..+..++...|++++|...|+++.+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 443 5667788888999999999999999999998765 3466788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 008022 423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQL 502 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 502 (581)
.|++++|++.|++..+.. +.+...+..+..++.+.|++++ ++.|+++++.+ +.+...+..++.++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999874 5567888899999999999999 99999999875 45778899999999999999999999
Q ss_pred HHHHhcCCCCCCC-HHhHHHHHHHHHccCC
Q 008022 503 LDRIRGGGEWNPD-IISYTSLLWGICNSGG 531 (581)
Q Consensus 503 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 531 (581)
|+++.+ +.|+ ...+..++.++...|+
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHccCC
Confidence 999988 5674 5678888888876555
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=3.8e-08 Score=94.25 Aligned_cols=379 Identities=8% Similarity=-0.037 Sum_probs=221.2
Q ss_pred hcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-cchH
Q 008022 7 EKC-EIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR-FSMI 84 (581)
Q Consensus 7 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 84 (581)
++| +++.|..+|+.++..- |. |+++.|.++|++.... .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 4888888888887752 22 8899999999999973 3799999999988887774 4667
Q ss_pred HHHHHHHHhC-CC-CCChhhHHHHHHHHH----hcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc---cCCHHHHH
Q 008022 85 NPIYSNMKRD-GM-EPNVFTYNILLKALC----KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK---LGQVEEAR 155 (581)
Q Consensus 85 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~ 155 (581)
..+|+.+... |. +.+...|...+..+. .+++.+.+.++|++.+.. ++. .+..+...|.. ......+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHH
Confidence 8888887764 42 446678888887764 356788999999999874 221 12333333321 11122222
Q ss_pred HHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc--CC-----hhHHHHHHHHHHH
Q 008022 156 ELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDV--GN-----VETSLGILGQMFV 228 (581)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~a~~~~~~~~~ 228 (581)
.++... .+.+..|...++.+...-...+...|...+..-... |- .+.+..+|+++..
T Consensus 144 ~~~~~~----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~ 207 (493)
T 2uy1_A 144 KIVGDT----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207 (493)
T ss_dssp HHHHHH----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH
Confidence 222211 012222333333322210001222444444332211 10 2345667777666
Q ss_pred cCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH-HHHHHHhC--------
Q 008022 229 RGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVS-VSYQMEEN-------- 299 (581)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~-------- 299 (581)
.. +.+...|...+..+...|+.+.|..++++.... +.+...+. .|....+.++..+ +.......
T Consensus 208 ~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 208 SF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp HT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhh
Confidence 53 334566666666677777777777777777766 22222222 1222111222211 11111000
Q ss_pred CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCChhHHHHHHHHHhhCCCCCChhhH
Q 008022 300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ-NNMFHQAHSLIEKMAFENCPPNTVTF 378 (581)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 378 (581)
........|...+....+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...... +.++..+
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~ 357 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLK 357 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHH
Confidence 00112355667777777788899999999998 32 12234444433332222 336999999999988763 4455566
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEK 438 (581)
Q Consensus 379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 438 (581)
...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++....
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667777788899999999999873 2566777777777778999999998888764
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=1.6e-08 Score=96.87 Aligned_cols=105 Identities=8% Similarity=0.018 Sum_probs=66.1
Q ss_pred ccC-CHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC-hhHHHHHHH
Q 008022 147 KLG-QVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGN-VETSLGILG 224 (581)
Q Consensus 147 ~~g-~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~ 224 (581)
+.| +++.|+.+++.+ +..+-. ++++.+..+|+..... .|+...|...+....+.++ .+....+|+
T Consensus 6 ~~~~~i~~aR~vyer~----------l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHA----------RRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp ------CCHHHHHHHH----------HHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred HcCcchHHHHHHHHHH----------HHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 345 366666665554 222222 8899999999998875 4688888888877766663 355667777
Q ss_pred HHHHc-CC-CCCcccHHHHHHHHHc----cCCHHHHHHHHHHHHhC
Q 008022 225 QMFVR-GC-NPNIHSFTSLLKGYLL----GGRTHEASDLWNRMIRE 264 (581)
Q Consensus 225 ~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 264 (581)
..... |. +.+...|...+..+.. .++.+.+.++|++.+..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 76654 42 3355666666665432 35677888899988874
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=2.9e-09 Score=89.93 Aligned_cols=176 Identities=13% Similarity=0.000 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 008022 358 QAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVN----RVKEAFELV 433 (581)
Q Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 433 (581)
+|...|++..+.+ ++..+..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555542 45555666666666667777777777666643 44555555555555 5 677777777
Q ss_pred HHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 008022 434 TEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAFQLLGKMLIEGTK-LDAITFNIIIYAYCK----QGKVNNAIQLLD 504 (581)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 504 (581)
+...+.| +...+..+...|.. .+++++|.++|++..+.+.. .++..+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776644 45556666666665 67788888888877765421 126677777777777 677888888888
Q ss_pred HHhcCCCCCCCHHhHHHHHHHHHcc-C-----CHHHHHHHHHHHHHcC
Q 008022 505 RIRGGGEWNPDIISYTSLLWGICNS-G-----GMQEAFIYLQKMLNEG 546 (581)
Q Consensus 505 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 546 (581)
+..+. .++...+..|...|... | ++++|..+|+++.+.|
T Consensus 154 ~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88772 23455666777777543 2 7888888888887765
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=4.6e-10 Score=91.82 Aligned_cols=158 Identities=13% Similarity=0.005 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HH
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA-YC 491 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 491 (581)
+......+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344455555666666666666555432 3345555556666666666666666666655432 233322222211 11
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhccCC
Q 008022 492 KQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN---FATWNVLVRSLFSNLGH 567 (581)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 567 (581)
..++..+|+..++++.+ ..| +...+..++.++...|++++|...|+++++. .|+ ...+..+...+...|+.
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCC
Confidence 22222345666666655 344 4556666666666666666666666666653 232 33555566666666666
Q ss_pred CChHHHHHHHh
Q 008022 568 LGPVYILDDIM 578 (581)
Q Consensus 568 ~~a~~~~~~~~ 578 (581)
++|...+++.+
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666554
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=7e-09 Score=87.53 Aligned_cols=173 Identities=12% Similarity=-0.069 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC----CHHHHHHH
Q 008022 392 DWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG----MVVEAFQL 467 (581)
Q Consensus 392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 467 (581)
.+|.+.|++..+.+ +...+..+...|...+++++|++.|+...+.| ++..+..+...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35777888887754 67788888999999999999999999999875 56777777777777 6 89999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCC---HHhHHHHHHHHHc----cCCHHHHH
Q 008022 468 LGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPD---IISYTSLLWGICN----SGGMQEAF 536 (581)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~ 536 (581)
|++..+.+ +...+..+...|.. .+++++|+++|+++.+ ..|+ +.++..|...|.. .+++++|+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99998854 67788899999987 8899999999999998 3343 7888999999988 88999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhc-c-----CCCChHHHHHHHhh
Q 008022 537 IYLQKMLNEGICPNFATWNVLVRSLFSN-L-----GHLGPVYILDDIMA 579 (581)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~ 579 (581)
.+|++..+. .++...+..+...+... | +.++|+.++++..+
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999885 34555667777777653 2 67899999998765
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.4e-09 Score=96.84 Aligned_cols=164 Identities=14% Similarity=-0.016 Sum_probs=118.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHH
Q 008022 408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAIT-FNII 486 (581)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 486 (581)
.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.... |+... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 344556667777778888888888888887763 4466777778888888888888888888877653 34332 2233
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHH
Q 008022 487 IYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN---FATWNVLVRSLF 562 (581)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 562 (581)
...+...++.++|++.++++.. ..| +...+..++..+...|++++|+..|+++++. .|+ ...+..++..+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHH
Confidence 3446667777778888888777 345 5677788888888888888888888888774 343 456777888888
Q ss_pred hccCCCChHHHHHHHhh
Q 008022 563 SNLGHLGPVYILDDIMA 579 (581)
Q Consensus 563 ~~g~~~~a~~~~~~~~~ 579 (581)
..|+.++|...+++.+.
T Consensus 267 ~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 267 ALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHH
Confidence 88888888888877654
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.14 E-value=1.5e-08 Score=89.43 Aligned_cols=231 Identities=10% Similarity=-0.017 Sum_probs=175.7
Q ss_pred HhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHh----hcC
Q 008022 316 AKAG-NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN--MFHQAHSLIEKMAFENCPPNTVTFNTFIKGL----CGC 388 (581)
Q Consensus 316 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 388 (581)
.+.| ..++|+..++.++..++. +...|+.--.++...+ ++++++.+++.+...+ |.+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 3444 456899999999887533 4556777777777777 9999999999998875 56666776554444 444
Q ss_pred ---CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC---
Q 008022 389 ---GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVK--EAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM--- 460 (581)
Q Consensus 389 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 460 (581)
+++++++.+++.+.+.. +-+...|+.-...+...|.++ ++++.++.+.+.. +-|...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence 78899999999998766 457778888777788888888 9999999999875 5577788777777777776
Q ss_pred ---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHH
Q 008022 461 ---VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN-AIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEA 535 (581)
Q Consensus 461 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 535 (581)
++++++.+++++... +-|...|+.+...+.+.|+..+ +..+..++.+.....| ++..+..++.+|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 889999999998875 5588889888888888887444 5667777766221123 677888899999999999999
Q ss_pred HHHHHHHHHcCCCCCHH
Q 008022 536 FIYLQKMLNEGICPNFA 552 (581)
Q Consensus 536 ~~~~~~~~~~~~~~~~~ 552 (581)
+++++.+.+. +.|-..
T Consensus 278 ~~~~~~l~~~-~Dpir~ 293 (306)
T 3dra_A 278 RTVYDLLKSK-YNPIRS 293 (306)
T ss_dssp HHHHHHHHHT-TCGGGH
T ss_pred HHHHHHHHhc-cChHHH
Confidence 9999999863 345433
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=2.8e-09 Score=82.77 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=96.5
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 008022 377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC 456 (581)
Q Consensus 377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (581)
.+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34556667777778888888777776544 3355666777777778888888888888877664 445667777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 457 RAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 457 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
..|++++|.+.++++.... +.+..++..++.++...|++++|.+.++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888888888887764 44667777888888888888888888888776
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.13 E-value=8e-10 Score=90.37 Aligned_cols=164 Identities=13% Similarity=0.007 Sum_probs=107.1
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH-H
Q 008022 377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG-V 455 (581)
Q Consensus 377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 455 (581)
.+......+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.... |+...+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34455566667777777777777765543 3345566677777777777777777777766542 243333222211 1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHH
Q 008022 456 CRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEA 535 (581)
Q Consensus 456 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 535 (581)
...++..+|...+++.+... +.+...+..++.++...|++++|+..++++.+..+-.++...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223334677788877764 44677888888888888888888888888887322112345778888888888888888
Q ss_pred HHHHHHHHH
Q 008022 536 FIYLQKMLN 544 (581)
Q Consensus 536 ~~~~~~~~~ 544 (581)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887754
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=8.7e-08 Score=84.53 Aligned_cols=239 Identities=12% Similarity=0.083 Sum_probs=175.4
Q ss_pred HHHHhcCC-hhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----
Q 008022 278 HGLCSNGS-MDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG--NLLGASQIWNRMISNGCSPNVVAYTCMVKVL---- 350 (581)
Q Consensus 278 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 350 (581)
.+..+.|. .++|+.++..+...+ |.+...|+.-...+...+ ++++++..++.+....+. +..+|+.-...+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHH
Confidence 33344454 468999998888764 456777888778888888 899999999998887543 445555444444
Q ss_pred Hcc---CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChH--HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 008022 351 CQN---NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVD--WAMKLLDQMKQYECLPNITTYNELLDGLLRVNR 425 (581)
Q Consensus 351 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 425 (581)
... +++++++.+++.+.... |.+..+|..-..+....|.++ ++++.++.+.+.+ +-|...|+.....+...+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG
T ss_pred HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 444 78889999999998875 678888887777777788887 8899999988766 3467777777777777666
Q ss_pred ------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCH
Q 008022 426 ------VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV-VEAFQLLGKMLIEG--TKLDAITFNIIIYAYCKQGKV 496 (581)
Q Consensus 426 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 496 (581)
++++++.++.++... +-|...|+.+...+.+.|+. +.+..+..++...+ -+.++..+..++.+|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 888999998888774 66888888888888888774 44556666666532 134777888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 497 NNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 497 ~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
++|+++++.+.++ ..| ....|+..+
T Consensus 275 ~~A~~~~~~l~~~--~Dpir~~yW~~~~ 300 (306)
T 3dra_A 275 NESRTVYDLLKSK--YNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHHT--TCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cChHHHHHHHHHH
Confidence 9999999998852 345 444555443
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=1.5e-09 Score=96.61 Aligned_cols=169 Identities=15% Similarity=0.005 Sum_probs=118.7
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHH-HH
Q 008022 372 PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTY-NT 450 (581)
Q Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 450 (581)
+.+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.+... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455666667777778888888888888877654 335567777778888888888888888877664 3343322 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccC
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSG 530 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 530 (581)
....+...++.++|.+.+++.+... +.+...+..++.+|...|++++|++.+.++.+..+-..+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2333556677777888888887764 456777888888888888888888888888772211112567788888888888
Q ss_pred CHHHHHHHHHHHHH
Q 008022 531 GMQEAFIYLQKMLN 544 (581)
Q Consensus 531 ~~~~A~~~~~~~~~ 544 (581)
+.++|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888877653
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=8.8e-09 Score=88.01 Aligned_cols=168 Identities=8% Similarity=-0.070 Sum_probs=89.1
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH---HHHH
Q 008022 375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-P-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI---VTYN 449 (581)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 449 (581)
+..+..+...+...|++++|+..|+.+.+.... | ....+..+..++...|++++|+..|+.+.+.... +. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence 344455566677777888888888777654311 1 1235666677777777888888877777765311 21 2333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCcCHHHH-----------------HHHHHHHHhcC
Q 008022 450 TILHGVCR------------------AGMVVEAFQLLGKMLIEGTKLDAITF-----------------NIIIYAYCKQG 494 (581)
Q Consensus 450 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g 494 (581)
.+..++.. .|++++|...|+++++.. +.+.... ..++..|.+.|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444443 345666666666666542 1122111 22344455555
Q ss_pred CHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 495 KVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 495 ~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
++++|+..|+++.+..+-.| ....+..++.+|.+.|++++|.+.++.+..
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 55555555555554221111 113444555555555555555555555544
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=2e-08 Score=85.83 Aligned_cols=182 Identities=5% Similarity=-0.040 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh---hHHH
Q 008022 31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPT--VKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVF---TYNI 105 (581)
Q Consensus 31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 105 (581)
..+..++..+...|++++|+..|+++....+... ...+..+..++.+.|++++|+..|+++.+.. +.+.. .+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHH
Confidence 3444445555555555555555555554322111 2344444555555555555555555555432 11111 2222
Q ss_pred HHHHH------------------HhcCChhHHHHHHHHHhhCCCCCCc-chHHHHHHHHHccCCHHHHHHHHHHhCCCcc
Q 008022 106 LLKAL------------------CKNNRVDGAYKLLVEMGNKGCAPDA-VSYTTIVSSICKLGQVEEARELAMRFGSGVS 166 (581)
Q Consensus 106 l~~~~------------------~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 166 (581)
+..++ ...|++++|...|+++.+. .|+. ..+..........+.. ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~-------------~~ 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL-------------AK 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH-------------HH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH-------------HH
Confidence 22222 2457788888888888776 2332 2222211111000000 01
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 008022 167 VYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNV----ITYSTIISSLCDVGNVETSLGILGQMFVRG 230 (581)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 230 (581)
....+...+.+.|++++|+..|+.+.+.. |+. ..+..+..++.+.|+.++|...++.+...+
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 12345677888999999999999988763 332 457778889999999999999999888774
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=5e-09 Score=103.61 Aligned_cols=152 Identities=9% Similarity=-0.075 Sum_probs=95.3
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022 353 NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL 432 (581)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 432 (581)
.|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356777777777776653 4556677777777777777777777777776654 33456677777777777777777777
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhc
Q 008022 433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ---GKVNNAIQLLDRIRG 508 (581)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 508 (581)
+++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..++.++... |++++|.+.++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 77777653 4456677777777777777777777777777654 34566677777777777 777777777777776
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=3.4e-09 Score=104.79 Aligned_cols=152 Identities=11% Similarity=-0.080 Sum_probs=119.5
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHH
Q 008022 388 CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQL 467 (581)
Q Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 467 (581)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988765 3457788999999999999999999999999874 55688899999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 008022 468 LGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS---GGMQEAFIYLQKML 543 (581)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 543 (581)
+++.++.. +.+...+..++.+|...|++++|++.++++.+ ..| +...+..++.++... |++++|.+.+++++
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999875 45788999999999999999999999999988 456 677889999999999 99999999999998
Q ss_pred Hc
Q 008022 544 NE 545 (581)
Q Consensus 544 ~~ 545 (581)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 85
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=2.5e-09 Score=83.84 Aligned_cols=103 Identities=9% Similarity=-0.074 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL 522 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 522 (581)
+...+..+...+.+.|++++|...|++++... +.+...|..++.+|...|++++|++.|+++.+ +.| ++..|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHH
Confidence 44567777778888889999999998888875 45778888888888889999999999988888 556 56788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 523 LWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
+.+|...|++++|+..|+++++. .|+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 88888999999999999888874 56654
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=6e-09 Score=79.28 Aligned_cols=100 Identities=12% Similarity=-0.002 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW 524 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 524 (581)
..+......+.+.|++++|++.|++.++.. +.+..+|..++.+|.+.|++++|++.++++.+ +.| +...|..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHHH
Confidence 456666777888888888888888887764 45677788888888888888888888888877 455 5667788888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022 525 GICNSGGMQEAFIYLQKMLNEGICPNF 551 (581)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 551 (581)
++...|++++|++.|+++++. .|+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CcCC
Confidence 888888888888888888773 4543
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=3.4e-09 Score=95.49 Aligned_cols=226 Identities=10% Similarity=-0.047 Sum_probs=129.7
Q ss_pred cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 008022 283 NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK-AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHS 361 (581)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 361 (581)
.|++++|.+++++..+.. +. .+.. .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 455666776666655431 11 0122 45666666666554 345667788888887
Q ss_pred HHHHHhhCCC----C-CChhhHHHHHHHhhcCCChHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 008022 362 LIEKMAFENC----P-PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY----ECLP-NITTYNELLDGLLRVNRVKEAFE 431 (581)
Q Consensus 362 ~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 431 (581)
.+.+...... + ....++..+..+|...|++++|+..|++..+. +-.. ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7777654210 0 11345667777777778888888877776432 1111 12356666667766 77888877
Q ss_pred HHHHHHHcCCcc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHHHHHH
Q 008022 432 LVTEIEKCGIQL-----NIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLD-AITFNIIIYAYCKQGKVNNAIQ 501 (581)
Q Consensus 432 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 501 (581)
.+++..+..... ...++..+...+...|++++|++.+++.+.. +..+. ...+..++.++...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777766431110 1345666777777777777777777777753 11111 2245556666667777777777
Q ss_pred HHHHHhcCCCCCCCHH---hHHHHHHHHHccCCHHHHHH
Q 008022 502 LLDRIRGGGEWNPDII---SYTSLLWGICNSGGMQEAFI 537 (581)
Q Consensus 502 ~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~ 537 (581)
.|++.. ..+-.++.. ....++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777777 332222211 233344433 4566555555
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=7.2e-08 Score=86.19 Aligned_cols=166 Identities=13% Similarity=-0.018 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CcC--HHH
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI-----VTYNTILHGVCRAGMVVEAFQLLGKMLIEGT---KLD--AIT 482 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~ 482 (581)
+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++++.... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455556666666666666665553211110 1222344445556677777777766664311 111 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC-HH
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRG---GGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG----ICPN-FA 552 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~ 552 (581)
++.++..|...|++++|+..++++.+ ..+..+ ...++..++.+|...|++++|+.+++++++.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 66666777777777777777766652 111111 11456666667777777777777776664321 1111 34
Q ss_pred hHHHHHHHHHhccCCCCh-HHHHHHHh
Q 008022 553 TWNVLVRSLFSNLGHLGP-VYILDDIM 578 (581)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a-~~~~~~~~ 578 (581)
++..++.++...|++++| ...+++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 556666666666777777 55555543
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=1.8e-08 Score=76.58 Aligned_cols=109 Identities=7% Similarity=-0.064 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
..+......+.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|++.+++.++.+ +.+...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456677888899999999999999988874 5678888889999999999999999999999875 55788899999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022 491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW 524 (581)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 524 (581)
...|++++|++.|+++.+ +.| +...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~---l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ---VDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH---HCcCCHHHHHHHHH
Confidence 999999999999999988 567 4555555543
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=5.8e-08 Score=82.23 Aligned_cols=125 Identities=13% Similarity=-0.040 Sum_probs=79.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 008022 378 FNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR 457 (581)
Q Consensus 378 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (581)
+..+...+...|++++|...|++.. .|+...+..+...+...|++++|++.++...+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445555666677777777766653 3455666666666777777777777777666653 4455666666666677
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 458 AGMVVEAFQLLGKMLIEGTKLDA----------------ITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.|++++|.+.++++.... +.+. ..+..++.+|...|++++|.+.++++.+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777777766653 1122 5566666666667777777777766666
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=4.6e-09 Score=94.63 Aligned_cols=224 Identities=11% Similarity=0.005 Sum_probs=156.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 008022 318 AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ-NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMK 396 (581)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 396 (581)
.|++++|.+++++..+... . .+.. .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667788888877765411 1 1222 56777777777664 456778899999999
Q ss_pred HHHHHhhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCcc-cHHHHHHHHHHHHhcCCHHHHHH
Q 008022 397 LLDQMKQY----ECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKC----GIQL-NIVTYNTILHGVCRAGMVVEAFQ 466 (581)
Q Consensus 397 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 466 (581)
.|.+..+. +-.+ -..+|+.+...|...|++++|+..+++..+. |-+. ...++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887542 2111 1347888889999999999999999987653 2111 24577788888888 99999999
Q ss_pred HHHHHHHCCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHhHHHHHHHHHccCCHHHHHH
Q 008022 467 LLGKMLIEGTKL-----DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----IISYTSLLWGICNSGGMQEAFI 537 (581)
Q Consensus 467 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 537 (581)
.+++.+...... ...++..++.+|...|++++|++.++++.+...-.++ ...+..++.++...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999862111 1467889999999999999999999998762211111 2366777788888999999999
Q ss_pred HHHHHHHcCCCCCH------HhHHHHHHHHHhccCCCChHH
Q 008022 538 YLQKMLNEGICPNF------ATWNVLVRSLFSNLGHLGPVY 572 (581)
Q Consensus 538 ~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~ 572 (581)
.|++.+ . .|+. .....++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 4 3432 1233444444 4466544433
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=6.6e-08 Score=86.46 Aligned_cols=164 Identities=10% Similarity=-0.041 Sum_probs=114.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHhhCCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-cc----HHHHHH
Q 008022 381 FIKGLCGCGRVDWAMKLLDQMKQYEC-LPNI----TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ-LN----IVTYNT 450 (581)
Q Consensus 381 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 450 (581)
.+..+...|++++|...++...+... .|+. ..+..+...+...+++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888765321 1221 12234555666677888898888888763222 22 236788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC-CHHhHH
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIE-----GTKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG---EWNP-DIISYT 520 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~ 520 (581)
+...|...|++++|..+++++++. +..+ ...++..++.+|.+.|++++|++.++++.+.. +..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888999999999999888842 1112 23467888899999999999999998876511 1112 256788
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHH
Q 008022 521 SLLWGICNSG-GMQEAFIYLQKMLN 544 (581)
Q Consensus 521 ~l~~~~~~~g-~~~~A~~~~~~~~~ 544 (581)
.++.+|...| .+++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8999999999 46999999988854
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=5.8e-09 Score=82.07 Aligned_cols=98 Identities=11% Similarity=-0.030 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL 522 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 522 (581)
+...+..+...+...|++++|...|++++... +.+...|..++.+|...|++++|++.|+++.. +.| ++..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHH
Confidence 44556666777777888888888888877764 44677777778888888888888888888777 445 55677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 008022 523 LWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
+.+|...|++++|+..|+++++.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888887663
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=1.6e-07 Score=83.91 Aligned_cols=168 Identities=9% Similarity=-0.075 Sum_probs=116.6
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---ccc--HH
Q 008022 377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI-----TTYNELLDGLLRVNRVKEAFELVTEIEKCGI---QLN--IV 446 (581)
Q Consensus 377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 446 (581)
.+...+..+...|++++|.+.++...+....... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677778888888888776654321110 1233455566777889999998888775321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC---C-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC-CH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIE---G-TKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG---EWNP-DI 516 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~ 516 (581)
+++.+...|...|++++|...++++... . ..+ ...++..++.+|...|++++|++.++++.+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988732 1 111 12578889999999999999999999886521 1111 15
Q ss_pred HhHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 008022 517 ISYTSLLWGICNSGGMQEA-FIYLQKMLN 544 (581)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 544 (581)
.+|..++.+|...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777888753
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=1.1e-07 Score=80.46 Aligned_cols=127 Identities=12% Similarity=-0.092 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ 493 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (581)
..+...+...|++++|...+++.. +|+...+..+...+...|++++|.+.+++.+... +.+...+..++.+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344555666677777777766553 4456666666777777777777777777776654 34566666677777777
Q ss_pred CCHHHHHHHHHHHhcCCCCC-------------C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 494 GKVNNAIQLLDRIRGGGEWN-------------P-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 494 g~~~~A~~~~~~~~~~~~~~-------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
|++++|++.++++.+..+-. | ....+..++.++...|++++|...|+++++.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777766622211 1 1255666667777777777777777777653
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=5.9e-08 Score=78.35 Aligned_cols=128 Identities=10% Similarity=0.014 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++.+... +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666777778888888888888887763 4467777788888888888888888888888764 44677788888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHH--HHHHHHHccCCHHHHHHHHHHHH
Q 008022 491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYT--SLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
...|++++|.+.++++.+ ..| +...+. ..+..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888887 334 444443 33334677788888888887764
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=6.8e-07 Score=79.81 Aligned_cols=163 Identities=8% Similarity=-0.017 Sum_probs=120.3
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCC-CCCh----hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-CC----hhhHHH
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFENC-PPNT----VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-PN----ITTYNE 415 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 415 (581)
.+..+...|++++|..++++...... .++. ..+..+...+...+++++|...++...+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888776421 1121 12334667777888999999999998764322 22 225888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHH
Q 008022 416 LLDGLLRVNRVKEAFELVTEIEKC-----GIQL-NIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLD-AITFN 484 (581)
Q Consensus 416 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 484 (581)
+...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|.+.+++.+.. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999999999988741 1122 2347788899999999999999999998854 21122 66889
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhc
Q 008022 485 IIIYAYCKQG-KVNNAIQLLDRIRG 508 (581)
Q Consensus 485 ~l~~~~~~~g-~~~~A~~~~~~~~~ 508 (581)
.++.+|...| ++++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 46999999998865
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=3e-07 Score=81.91 Aligned_cols=234 Identities=9% Similarity=-0.041 Sum_probs=164.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC-C-C
Q 008022 314 GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN-MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC-G-R 390 (581)
Q Consensus 314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 390 (581)
...+.+..++|+++++.++..++. +..+|+.--.++...+ .+++++.+++.+.... |.+..+|+.-..++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 334455567899999999887543 5556666666666677 5899999999998875 66777887766666665 6 7
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC--
Q 008022 391 VDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVK--------EAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM-- 460 (581)
Q Consensus 391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 460 (581)
+++++++++.+.+.. +.+...|+.-...+...|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 889999999988766 446777776666666666665 8888888888875 5577888887777777775
Q ss_pred -----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhcCC----C
Q 008022 461 -----VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV--------------------NNAIQLLDRIRGGG----E 511 (581)
Q Consensus 461 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~ 511 (581)
++++++.+++++... +-|...|+.+...+.+.|.. .+..++...+.... .
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 688888888888865 55777888777777776654 23333333333311 0
Q ss_pred CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022 512 WNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT 553 (581)
Q Consensus 512 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 553 (581)
-.+++..+..++..|...|+.++|.++++.+.+. ..|-..-
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~ 338 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAG 338 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHH
Confidence 1246777888888888889999999999998764 5554433
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=4.2e-08 Score=76.85 Aligned_cols=104 Identities=11% Similarity=-0.071 Sum_probs=86.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
+...+..+...+...|++++|...|+.+.+.. |.+...|..+..++...|++++|+..|++++... +.++..+..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34467777888888999999999999988874 5578888889999999999999999999998875 456788889999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 008022 489 AYCKQGKVNNAIQLLDRIRGGGEWNPDII 517 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 517 (581)
+|...|++++|+..|+++.+ +.|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~---l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ---HSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCHH
Confidence 99999999999999999988 456654
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=2.7e-08 Score=81.39 Aligned_cols=117 Identities=9% Similarity=0.076 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCH--HHH
Q 008022 423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA-YCKQGKV--NNA 499 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 499 (581)
.|++++|...++...+.. +.+...+..+...+...|++++|...++++.... +.+...+..++.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444444432 2334444444444445555555555555544432 2234444444444 4444554 555
Q ss_pred HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+..++++.+ ..| +...+..++.++...|++++|...++++++
T Consensus 101 ~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALA---LDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555444 223 334444445555555555555555555544
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.86 E-value=2.3e-08 Score=78.63 Aligned_cols=109 Identities=6% Similarity=-0.069 Sum_probs=90.1
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022 397 LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT 476 (581)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 476 (581)
.|+.+.... +.+...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|++.+++++...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 345555443 2345567778888899999999999999998864 5578888889999999999999999999999875
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.+...+..++.+|...|++++|++.|+++.+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778889999999999999999999999987
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.85 E-value=4.5e-08 Score=74.61 Aligned_cols=105 Identities=8% Similarity=0.035 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC--------HH
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD--------II 517 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------~~ 517 (581)
..+..+...+.+.|++++|++.|+++++.. +.+..+|..++.+|...|++++|++.++++.+ +.|+ ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHHHH
Confidence 456667778888888888888888888764 44677788888888888888888888888776 2232 23
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 008022 518 SYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNV 556 (581)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 556 (581)
+|..++.++...|++++|++.|++.+. ..|++.....
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 567778888888888888888888876 3567665543
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.85 E-value=6.4e-08 Score=83.16 Aligned_cols=134 Identities=9% Similarity=-0.126 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHH
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYC 491 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 491 (581)
..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..++.++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 345667788899999999998887653 433355556667888999999999998665432 121 346788889999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022 492 KQGKVNNAIQLLDRIRGGGEWNPD--IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT 553 (581)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 553 (581)
..|++++|+..|++... .+..|. ...+...+.++.+.|+.++|...|+++... .|+...
T Consensus 183 ~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~ 243 (282)
T 4f3v_A 183 NLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKV 243 (282)
T ss_dssp HTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHH
Confidence 99999999999999885 333253 346777888899999999999999999874 566333
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.85 E-value=1.1e-07 Score=73.04 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL 522 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 522 (581)
+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|++.++++.. ..| +...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC---IDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---cCccCHHHHHHH
Confidence 44556666777777777888887777777653 34566777777777778888888888877776 234 46677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCC
Q 008022 523 LWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGH 567 (581)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 567 (581)
+.++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777888888888888888777642 22455566666666666654
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=7.6e-08 Score=77.67 Aligned_cols=129 Identities=10% Similarity=-0.025 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
...+..+...+...|++++|...+++.+... +.+..++..++.++...|++++|++.++++.+ ..| +...+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 3456777888899999999999999999875 45788899999999999999999999999988 345 677899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhccCCCChHHHHHHHh
Q 008022 524 WGICNSGGMQEAFIYLQKMLNEGICPNFATWN--VLVRSLFSNLGHLGPVYILDDIM 578 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 578 (581)
.++...|++++|...++++++.. +.+...+. ..+..+...|++++|++.+++..
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999998752 23444443 33334777899999998887653
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.85 E-value=4.2e-08 Score=80.23 Aligned_cols=124 Identities=6% Similarity=0.030 Sum_probs=104.1
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCc-
Q 008022 4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDA-LLAENRF- 81 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 81 (581)
.+...|++++|...++..++..+. +..++..++..|...|++++|...|+++....+ .++..+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence 356789999999999999987654 889999999999999999999999999997664 567788888888 7789998
Q ss_pred -chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 008022 82 -SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKG 130 (581)
Q Consensus 82 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 130 (581)
++|...++.+.+.. +.+...+..+...+...|++++|...++...+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998875 5567888889999999999999999999998873
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=9e-08 Score=73.03 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
...+......+.+.|++++|...|++.+... +.+...+..++.+|...|++++|+..++++.+ +.| +...|..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHH
Confidence 3456666777778888888888888887764 44677788888888888888888888888877 445 566777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 008022 524 WGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.++...|++++|...|+++++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 8888888888888888888763
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.84 E-value=5e-06 Score=74.09 Aligned_cols=237 Identities=8% Similarity=0.035 Sum_probs=159.4
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-C-Ch
Q 008022 280 LCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG-NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQN-N-MF 356 (581)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 356 (581)
....+..++|++++..+...+ |.+...|+.-...+...+ .+++++..++.+....+. +..+|+.-..++... + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 334445567888888888764 446677777777777777 588888888888877543 666666666555555 5 78
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChH--------HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---
Q 008022 357 HQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVD--------WAMKLLDQMKQYECLPNITTYNELLDGLLRVNR--- 425 (581)
Q Consensus 357 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 425 (581)
++++.+++++.... +.+..+|+....+....+.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 88888888888765 667777776665555555555 7888888887765 3467778777777777665
Q ss_pred ----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----C
Q 008022 426 ----VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV--------------------VEAFQLLGKMLIEG-----T 476 (581)
Q Consensus 426 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~ 476 (581)
++++++.+++++... +-|...|+.+-..+.+.|+. ....+....+.... .
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 678888888887764 55777777766666666653 33333333333321 0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
.+++..+..++..|...|+.++|.++++.+.++ ..| ...-|+..+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~--~dpir~~yw~~~~ 344 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE--YDQMRAGYWEFRR 344 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCGGGHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--hChHHHHHHHHHH
Confidence 356777888888888888888899998888752 345 333444433
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.84 E-value=6.5e-08 Score=81.16 Aligned_cols=158 Identities=10% Similarity=-0.108 Sum_probs=105.6
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-cccHHHHHHHHHHHHhcCC
Q 008022 386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GI-QLNIVTYNTILHGVCRAGM 460 (581)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 460 (581)
...|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346777777775544433 21234456777777788888888888888876652 11 2234567777788888889
Q ss_pred HHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHhHHHHHHHHHccC
Q 008022 461 VVEAFQLLGKMLIE----GTKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----IISYTSLLWGICNSG 530 (581)
Q Consensus 461 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 530 (581)
+++|.+.+++.... +..+ ...++..++..+...|++++|...+++........++ ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888887754 1111 2345777888888899999999888887641111112 234677888888999
Q ss_pred CHHHHHHHHHHHHH
Q 008022 531 GMQEAFIYLQKMLN 544 (581)
Q Consensus 531 ~~~~A~~~~~~~~~ 544 (581)
++++|...++++.+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888865
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=9.7e-08 Score=73.65 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022 443 LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTS 521 (581)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 521 (581)
.+...+..+...+...|++++|...++++.... +.+..++..++.++...|++++|++.++++.+ ..| +...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ---LEPTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCchHHHHH
Confidence 345566666666777777777777777776653 33566667777777777777777777777766 234 4566677
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcc
Q 008022 522 LLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSNL 565 (581)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 565 (581)
++.++...|++++|...++++.+. .|+ ...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 777777777777777777777653 232 344445555554433
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=2e-07 Score=70.80 Aligned_cols=113 Identities=21% Similarity=0.191 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
...+..+...+...|++++|.+.++++.... +.+..++..++.++...|++++|+..++++.. ..| +..++..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHH
Confidence 3455566666666777777777777766653 33556666667777777777777777777665 223 455666677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022 524 WGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF 562 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (581)
..+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 77777777777777777776531 223344444444433
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=5.9e-08 Score=75.84 Aligned_cols=96 Identities=11% Similarity=-0.079 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
...+..+...+.+.|++++|...|++++..+ +.+...|..++.+|...|++++|+..++++.. +.| ++..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGAL---MDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHHHH
Confidence 3444555666667777777777777776654 34666677777777777777777777777766 334 455666677
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 008022 524 WGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.+|...|++++|...|+++++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777765
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=2.6e-07 Score=70.18 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022 410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA 489 (581)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 489 (581)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4456667777777888888888888877653 4456677777788888888888888888887764 4466777788888
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHc
Q 008022 490 YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICN 528 (581)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 528 (581)
+...|++++|...++++.+ ..| +...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE---LDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHh
Confidence 8888888888888888876 334 45555555555543
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=1.3e-07 Score=72.82 Aligned_cols=117 Identities=7% Similarity=-0.109 Sum_probs=79.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34456666667777777777777777776653 3456667777777777777777777777777654 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC
Q 008022 489 AYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG 530 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 530 (581)
++...|++++|++.++++.+ ..| +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD---LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhc
Confidence 77777888888888777776 344 3445556666655544
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.80 E-value=7.2e-08 Score=87.78 Aligned_cols=150 Identities=11% Similarity=-0.040 Sum_probs=110.3
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc---------------HHHHHHHHH
Q 008022 389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN---------------IVTYNTILH 453 (581)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~ 453 (581)
+++++|...++...+.. +.+...+..+...+...|++++|+..|++..+.. +.+ ...+..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34444554444333221 1245577778888888899999999998888763 222 477888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022 454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM 532 (581)
Q Consensus 454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 532 (581)
++.+.|++++|+..+++++... +.+...+..++.+|...|++++|+..|+++.+ +.| +..++..+..++...|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888875 45777888888888888888888888888887 456 566788888888888888
Q ss_pred HHH-HHHHHHHHH
Q 008022 533 QEA-FIYLQKMLN 544 (581)
Q Consensus 533 ~~A-~~~~~~~~~ 544 (581)
++| ...|++|..
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 887 456777654
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=1.2e-07 Score=72.77 Aligned_cols=119 Identities=10% Similarity=0.037 Sum_probs=87.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
+...+..+...+...|++++|...++...... +.+...+..+...+...|++++|.+.+++..... +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34456666777777888888888888877653 4466777777778888888888888888887764 445677788888
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022 489 AYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM 532 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 532 (581)
++...|++++|.+.++++.+ ..| +...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALE---LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888877 345 556677777777666653
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=1.8e-06 Score=76.62 Aligned_cols=227 Identities=10% Similarity=0.077 Sum_probs=142.4
Q ss_pred HhcCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC----------hhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 008022 316 AKAGNLL-GASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM----------FHQAHSLIEKMAFENCPPNTVTFNTFIKG 384 (581)
Q Consensus 316 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (581)
.+.|.++ +|+.+++.+...++. +..+|+.--.++...+. +++++.+++.+.... |.+..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455544 788888888876432 33344433333322222 567777777777664 5677777766666
Q ss_pred hhcCC--ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc---
Q 008022 385 LCGCG--RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR-VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA--- 458 (581)
Q Consensus 385 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 458 (581)
+...+ ++++++.+++.+.+.. +-+...|+.-...+...|. ++++++.+..+++.. +-|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 66666 4778888888887765 3466677766666667776 478888888877764 55667776666655554
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCCCH
Q 008022 459 -----------GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ-----------GKVNNAIQLLDRIRGGGEWNPDI 516 (581)
Q Consensus 459 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~~ 516 (581)
+.++++++.+.+.+... +-|...|+.+-..+.+. +.++++++.++++.+ ..|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle---~~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE---LEPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH---HCTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh---hCccc
Confidence 34677777777777764 44666666555555554 346777777777777 55654
Q ss_pred HhHHHHHHHH-----HccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022 517 ISYTSLLWGI-----CNSGGMQEAFIYLQKMLNEGICPNFAT 553 (581)
Q Consensus 517 ~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~ 553 (581)
.|..+..++ -..|..+++...+.++++ +.|-..-
T Consensus 272 -~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 272 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp -HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred -chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 333222222 235666777777777776 4565443
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.5e-07 Score=80.83 Aligned_cols=194 Identities=11% Similarity=-0.057 Sum_probs=128.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHccCChhHHHHHHHHHhhCCCCCC---------------
Q 008022 317 KAGNLLGASQIWNRMISNGCSPNVVAYTCM-------VKVLCQNNMFHQAHSLIEKMAFENCPPN--------------- 374 (581)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 374 (581)
..++...|.+.|.++....+. ....|..+ ...+...++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 456677777777777665322 34445444 23333334444444444443331 111
Q ss_pred -------hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc--H
Q 008022 375 -------TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN--I 445 (581)
Q Consensus 375 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 445 (581)
....-.+..++...|++++|.+.|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345677788899999999998887654 444355555667888999999999998665431 121 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhH
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISY 519 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 519 (581)
..+..+..++...|++++|+..|++.......| ........+.++.+.|+.++|...|+++.. ..|+...+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a---~~P~~~~~ 244 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT---THPEPKVA 244 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHH
Confidence 366778888999999999999999998543224 345677888899999999999999999988 45663333
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.78 E-value=1.7e-07 Score=85.32 Aligned_cols=133 Identities=8% Similarity=-0.076 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008022 374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPN--------------ITTYNELLDGLLRVNRVKEAFELVTEIEKC 439 (581)
Q Consensus 374 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 439 (581)
+...+..+...+...|++++|...|++..+...... ...|..+..++.+.|++++|+..++.+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666667777777777777777777766542111 356666777777777777777777777765
Q ss_pred CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHhc
Q 008022 440 GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA-IQLLDRIRG 508 (581)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 508 (581)
. +.+...+..+..++...|++++|+..|++++... +.+..++..+..++...|++++| ...++++..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4456667777777777777777777777777654 34566677777777777777766 345555543
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.77 E-value=9.3e-08 Score=80.20 Aligned_cols=158 Identities=9% Similarity=-0.121 Sum_probs=117.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHhcCC
Q 008022 421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GT-KLDAITFNIIIYAYCKQGK 495 (581)
Q Consensus 421 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~ 495 (581)
...|++++|.+.++.+... .......+..+...+...|++++|...+++.+.. +. +....++..++..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4579999999966655432 2345678888999999999999999999998863 11 2245578889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC-C----HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcc
Q 008022 496 VNNAIQLLDRIRGGGEWNP-D----IISYTSLLWGICNSGGMQEAFIYLQKMLNEGI-CPN----FATWNVLVRSLFSNL 565 (581)
Q Consensus 496 ~~~A~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g 565 (581)
+++|.+.+++..+.....+ + ..++..++..+...|++++|...+++..+..- .++ ...+..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 9999999999876311122 2 34678899999999999999999999864311 112 233567888899999
Q ss_pred CCCChHHHHHHHhh
Q 008022 566 GHLGPVYILDDIMA 579 (581)
Q Consensus 566 ~~~~a~~~~~~~~~ 579 (581)
++++|.+.+++.++
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=5.1e-08 Score=86.31 Aligned_cols=192 Identities=7% Similarity=-0.043 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 008022 340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDG 419 (581)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 419 (581)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444555555666666666666666665543 3455566666666666666666666666666543 2344556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022 420 LLRVNRVKEAFELVTEIEKCGIQLNI-VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 420 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 498 (581)
+...|++++|...|+...+.. |+. ..+...+....+. .++... ........+.+......+...+ .|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 666667777766666665431 110 0011111111111 111111 1122222333444444343322 467777
Q ss_pred HHHHHHHHhcCCCCCCCHH-hHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 008022 499 AIQLLDRIRGGGEWNPDII-SYTSLLWGICNS-GGMQEAFIYLQKMLN 544 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 544 (581)
|++.++++.+ ..|+.. ....+...+... +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777776666 345432 223333333333 556677777766643
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=4.3e-08 Score=86.77 Aligned_cols=99 Identities=11% Similarity=-0.141 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (581)
+...+..++..+...|++++|+..|+.+....+ .+...|..+..++.+.|++++|...++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 556777888888888888888888888887554 467788888888888888888888888888765 556677888888
Q ss_pred HHHhcCChhHHHHHHHHHhhC
Q 008022 109 ALCKNNRVDGAYKLLVEMGNK 129 (581)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~ 129 (581)
++...|++++|...|+...+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877664
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=1.3e-07 Score=73.84 Aligned_cols=98 Identities=8% Similarity=-0.045 Sum_probs=83.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
+...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...+++++... +.+...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34456667778889999999999999988864 5578888889999999999999999999999875 457778889999
Q ss_pred HHHhcCCHHHHHHHHHHHhc
Q 008022 489 AYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~ 508 (581)
+|...|++++|++.|+++.+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=2.8e-08 Score=83.01 Aligned_cols=126 Identities=14% Similarity=0.024 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN----------------IVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 475 (581)
.+..+...+...|++++|+..|++..+.. +.+ ...+..+..++...|++++|+..+++++...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34445555555666666666666655431 111 1455566666666777777777777666653
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHH-HHHHHH
Q 008022 476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAF-IYLQKM 542 (581)
Q Consensus 476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 542 (581)
+.+...+..++.+|...|++++|++.|+++.+ +.| +...+..+..++...++.+++. ..+..+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777777777776665 334 4455556665555555555544 334444
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=7.6e-07 Score=66.72 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW 524 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~ 524 (581)
..+..+...+...|++++|...+++..... +.+...+..++.++...|++++|...++++.+ ..| +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---hCcccHHHHHHHHH
Confidence 445555666666777777777777766653 33566666667777777777777777777666 234 4556666777
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 008022 525 GICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~ 544 (581)
++...|++++|...++++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777765
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=5.8e-07 Score=68.45 Aligned_cols=97 Identities=13% Similarity=-0.009 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022 410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA 489 (581)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 489 (581)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++.+... +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456677778888899999999999888764 5567888888888999999999999999998875 4467788889999
Q ss_pred HHhcCCHHHHHHHHHHHhc
Q 008022 490 YCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~ 508 (581)
+...|++++|++.++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 9999999999999998887
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=4.6e-07 Score=68.93 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT--KLD----AITFN 484 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 484 (581)
..+..+...+.+.|++++|++.|++.++.. |.+...|..+..+|...|++++|++.+++.++... .++ ..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356667778888888888888888888764 55677788888888888888888888888876421 111 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHH
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSL 522 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 522 (581)
.++.++...|++++|++.|++... ..|++.....+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~---~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS---EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---hCcCHHHHHHH
Confidence 788888888999999999988877 45676554433
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.68 E-value=4.1e-08 Score=81.94 Aligned_cols=153 Identities=11% Similarity=-0.049 Sum_probs=106.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---------------HHHH
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD---------------AITF 483 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~ 483 (581)
.....|+++++.+.|+.-... .......+..+...+...|++++|...|++.+....... ..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334456666666666533221 122345677788889999999999999999998632211 2788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHH
Q 008022 484 NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICP-NFATWNVLVRSL 561 (581)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 561 (581)
..++.+|...|++++|+..++++.+ +.| +...+..++.+|...|++++|+..|+++++. .| +...+..+..++
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence 8999999999999999999999998 456 6778999999999999999999999999874 45 456677777777
Q ss_pred HhccCCCChH-HHHHHH
Q 008022 562 FSNLGHLGPV-YILDDI 577 (581)
Q Consensus 562 ~~~g~~~~a~-~~~~~~ 577 (581)
...++..++. ..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7777666665 334433
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=1.3e-06 Score=65.39 Aligned_cols=109 Identities=14% Similarity=0.020 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022 410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA 489 (581)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 489 (581)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..... +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4456677778888888999998888888763 4567778888888888899999999998888764 4467788888889
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 490 YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
+...|++++|.+.++++.+ ..| +...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK---HEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH---cCCCCHHHHHHHH
Confidence 9999999999999999887 445 444444443
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.68 E-value=2.5e-07 Score=70.99 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCC----HHhHH
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW-NPD----IISYT 520 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~p~----~~~~~ 520 (581)
..+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++++....+- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445566666777777777777777777654 445666777777777777777777777777652110 011 55677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 008022 521 SLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSL 561 (581)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 561 (581)
.++.++...|++++|...|+++.+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7777777778888888888777763 45555544444433
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.68 E-value=3.2e-07 Score=73.74 Aligned_cols=96 Identities=8% Similarity=-0.020 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
..+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|+..+++++... +.+...+..++.+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666655542 3345555555666666666666666666665543 33455555666666
Q ss_pred HhcCCHHHHHHHHHHHhc
Q 008022 491 CKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~ 508 (581)
...|++++|++.|+++.+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 666666666666666555
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=1.9e-05 Score=70.13 Aligned_cols=221 Identities=8% Similarity=0.019 Sum_probs=118.0
Q ss_pred hcCChh-hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022 282 SNGSMD-EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN----------LLGASQIWNRMISNGCSPNVVAYTCMVKVL 350 (581)
Q Consensus 282 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (581)
+.|.++ +|+.++..+...+ |.+...|+.--..+...+. +++++.+++.+....+. +..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 445444 5667666666653 3344445443333333222 45666666666655332 555555555555
Q ss_pred HccC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCC-hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----
Q 008022 351 CQNN--MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGR-VDWAMKLLDQMKQYECLPNITTYNELLDGLLRV---- 423 (581)
Q Consensus 351 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 423 (581)
...+ .+++++.+++.+.... +.+...|+.-..+....|. ++++++.++.+.+.+ +.|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 5555 3667777777766654 5566666655555555665 466666666666654 33555555555444443
Q ss_pred ----------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCcCHHH
Q 008022 424 ----------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA-----------GMVVEAFQLLGKMLIEGTKLDAIT 482 (581)
Q Consensus 424 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~ 482 (581)
+.++++++.+....... |-|...|+.+-..+.+. +.++++++.++++.+.. +.+..+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccchH
Confidence 33566666666666553 44555555444444333 23566666676666643 122222
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHhc
Q 008022 483 FNIIIYAYC---KQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 483 ~~~l~~~~~---~~g~~~~A~~~~~~~~~ 508 (581)
+..++.... ..|..++....+.++.+
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 222221111 24556666666666666
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=2.2e-07 Score=70.01 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHc
Q 008022 450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICN 528 (581)
Q Consensus 450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 528 (581)
.+...+.+.|++++|...+++++... +.+...+..++.++...|++++|+..++++.+ +.| +...+..++.++..
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 34455566666666666666666653 33566666666666666677777766666666 345 45566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 008022 529 SGGMQEAFIYLQKMLN 544 (581)
Q Consensus 529 ~g~~~~A~~~~~~~~~ 544 (581)
.|++++|+..++++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6667777766666664
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=5.2e-07 Score=69.90 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=70.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022 443 LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTS 521 (581)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 521 (581)
.+...+..+...+...|++++|...+++.+... +.+...+..++.++...|++++|+..++++.+ +.| +...+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCchhHHHHHH
Confidence 455666677777777777777777777777664 34566777777777777777777777777776 334 5667777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 008022 522 LLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
++.++...|++++|...|+++++
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777777765
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=6.2e-07 Score=72.03 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL 522 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 522 (581)
+...+..+...+...|++++|++.|++.+... +.+...+..++.+|...|++++|+..++++.+ +.| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 44556666777777777777777777777764 34666777777777777777777777777776 345 46677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 008022 523 LWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
+.+|...|++++|+..|+++++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 77777777777777777777653
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=1.1e-06 Score=68.08 Aligned_cols=99 Identities=14% Similarity=0.009 Sum_probs=80.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008022 408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIII 487 (581)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 487 (581)
.+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++++... +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 456677778888888888888888888887764 4567788888888888888999988888888865 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhc
Q 008022 488 YAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.+|...|++++|+..++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888889999999988888876
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=6.1e-07 Score=66.50 Aligned_cols=97 Identities=13% Similarity=-0.042 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGI 526 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 526 (581)
.+..+...+...|++++|...++++.... +.+...+..++.++...|++++|++.++++.+..+-..+...+..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34444455555555555555555555543 23445555555566666666666666666555211100244555556666
Q ss_pred Hcc-CCHHHHHHHHHHHHH
Q 008022 527 CNS-GGMQEAFIYLQKMLN 544 (581)
Q Consensus 527 ~~~-g~~~~A~~~~~~~~~ 544 (581)
... |++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 666 666666666666654
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.1e-06 Score=67.44 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHh
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIIS 518 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~ 518 (581)
+...+..+...+...|++++|.+.+++..... |+ ...+..++.+|...|++++|+..++++.+ ..| +...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE---KDGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCccCHHH
Confidence 44555566666666667777777776666542 33 45666666777777777777777777666 234 4556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 519 YTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
+..++.++...|++++|...|+++++.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666777777777777777777777653
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.57 E-value=7.8e-07 Score=68.17 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 008022 411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT--KLD----AITFN 484 (581)
Q Consensus 411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 484 (581)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666777777888888888888877663 44667777777788888888888888888776531 111 66777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHH
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWG 525 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 525 (581)
.++.++...|++++|.+.++++.+ ..|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA---EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence 888888888888888888888877 34565555544443
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.54 E-value=1.8e-06 Score=63.86 Aligned_cols=98 Identities=11% Similarity=-0.098 Sum_probs=73.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNII 486 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 486 (581)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..... +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34456666777777788888888887777653 4456677777777888888888888888887763 33 56777788
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhc
Q 008022 487 IYAYCKQ-GKVNNAIQLLDRIRG 508 (581)
Q Consensus 487 ~~~~~~~-g~~~~A~~~~~~~~~ 508 (581)
+.++... |++++|++.++++..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 8888888 888888888888877
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=2.5e-06 Score=65.11 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHhHHHHH
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDA---ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----IISYTSLL 523 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~ 523 (581)
+...+...|++++|...++++.... +.+. ..+..++.++...|++++|+..++++... .|+ ..++..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence 4455666777777777777777653 2222 46666777777777777777777777662 342 45566777
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 008022 524 WGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.++...|++++|...|+++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777663
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=1.3e-06 Score=65.75 Aligned_cols=95 Identities=11% Similarity=-0.051 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC 491 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (581)
.+..+...+.+.|++++|+..++...+.. +.+...+..+..++...|++++|+..+++++... +.+...+..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45566777888899999999999988864 5577888888888999999999999999998875 446778888999999
Q ss_pred hcCCHHHHHHHHHHHhc
Q 008022 492 KQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 492 ~~g~~~~A~~~~~~~~~ 508 (581)
..|++++|+..++++.+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999887
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.53 E-value=1.2e-06 Score=70.06 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022 448 YNTILHGVCRAGMVVEAFQLLGKMLIE--------G---------TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG 510 (581)
Q Consensus 448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (581)
+......+.+.|++++|+..|.+.+.. . .+.+..++..++.+|.+.|++++|+..++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~-- 91 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK-- 91 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--
Confidence 334444455555555555555555443 0 022345677778888888888888888888877
Q ss_pred CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 511 EWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
+.| +...|..++.+|...|++++|...|+++++. .|+..
T Consensus 92 -~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 92 -REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred -cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 445 5667778888888888888888888888773 45533
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.6e-06 Score=65.43 Aligned_cols=109 Identities=14% Similarity=0.035 Sum_probs=77.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFN 484 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 484 (581)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4456666677777777888888887777764 333 5667777777888888888888888877764 34667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL 523 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 523 (581)
.++.+|...|++++|.+.++++.+ +.| +...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS---LEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH---HCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHH
Confidence 888888888888888888888877 345 344444333
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=4.3e-06 Score=79.56 Aligned_cols=197 Identities=7% Similarity=-0.059 Sum_probs=89.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHccCChhHHHHHHHHHhhCCCC-CC
Q 008022 312 IDGFAKAGNLLGASQIWNRMISNGCSPNV----------------VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCP-PN 374 (581)
Q Consensus 312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 374 (581)
...+.+.|++++|.+.|..+.+....... ..+..+...|...|++++|.+.+..+...... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44556677777777777777665332211 01444555566666666666665554432100 11
Q ss_pred h----hhHHHHHHHhhcCCChHHHHHHHHHHhh----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--
Q 008022 375 T----VTFNTFIKGLCGCGRVDWAMKLLDQMKQ----YECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKC--GI-- 441 (581)
Q Consensus 375 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 441 (581)
. .+.+.+...+...|+++.+..+++.... .+..+ ...++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222333344555555555554422 11111 1223444555555555555555555544321 00
Q ss_pred -cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-c-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 442 -QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE--GTK-L-D--AITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 442 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.....+..++..|...|++++|..++++.... ... | . ...+..++..+...|++++|...+..+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111234444455555555555555555554432 011 1 0 12233344444445555555555554443
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.45 E-value=5.3e-07 Score=67.51 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHH
Q 008022 458 AGMVVEAFQLLGKMLIEG--TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQE 534 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 534 (581)
.|++++|+..|+++++.+ -+.+..++..++.+|...|++++|++.++++.+ ..| +...+..++.++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK---QFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHcCCHHH
Confidence 466667777777776642 123445666677777777777777777777766 334 45566677777777777777
Q ss_pred HHHHHHHHHHc
Q 008022 535 AFIYLQKMLNE 545 (581)
Q Consensus 535 A~~~~~~~~~~ 545 (581)
|+..++++++.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777653
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=7.3e-07 Score=85.29 Aligned_cols=117 Identities=11% Similarity=0.027 Sum_probs=53.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 498 (581)
.+...|++++|.+.+++..+.. +.+...+..+..++.+.|++++|++.++++++.. +.+...+..++.+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555442 2334455555555555555555555555555542 2344445555555555555555
Q ss_pred HHHHHHHHhcCCCCCC-CHHhHHHHHHH--HHccCCHHHHHHHHH
Q 008022 499 AIQLLDRIRGGGEWNP-DIISYTSLLWG--ICNSGGMQEAFIYLQ 540 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 540 (581)
|++.++++.+ +.| +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH---HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555544 222 22233333333 444455555555444
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=1.9e-06 Score=69.00 Aligned_cols=133 Identities=13% Similarity=0.045 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHH
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQ-LN----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEG----TKL-DAI 481 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 481 (581)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..... .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666667777777777777766543100 11 1356667777777888888888887776531 011 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGG---EWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
++..++.++...|++++|.+.++++.+.. +..+ ...++..++..+...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56677778888888888888887765411 1111 234567777888888888888888887764
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=1.6e-06 Score=82.52 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=112.8
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc---------------HHHHHHHHH
Q 008022 389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN---------------IVTYNTILH 453 (581)
Q Consensus 389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~ 453 (581)
+++++|...|+...... +.....+..+...+.+.|++++|+..|++.++.. +.+ ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34445555444333211 1234567788889999999999999999988753 222 578888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022 454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM 532 (581)
Q Consensus 454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 532 (581)
+|.+.|++++|+..+++++... +.+...+..++.+|...|++++|+..|+++.+ +.| +...+..+..++...|+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 45788899999999999999999999999998 556 566788888888888888
Q ss_pred HHHHH-HHHHHHH
Q 008022 533 QEAFI-YLQKMLN 544 (581)
Q Consensus 533 ~~A~~-~~~~~~~ 544 (581)
++|.+ .+.+|..
T Consensus 402 ~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 402 NERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 87764 4566644
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=6e-07 Score=67.23 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHHHHHcC--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 008022 423 VNRVKEAFELVTEIEKCG--IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAI 500 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 500 (581)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|...++++++.. +.+..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777643 13345667777777888888888888888887764 445777777888888888888888
Q ss_pred HHHHHHhc
Q 008022 501 QLLDRIRG 508 (581)
Q Consensus 501 ~~~~~~~~ 508 (581)
+.++++..
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888776
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.41 E-value=4.1e-06 Score=64.66 Aligned_cols=98 Identities=18% Similarity=0.064 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL------D-----AITFNIIIYAYCKQGKVNNAIQLLDRIRGG----GE 511 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 511 (581)
.+......+.+.|++++|+..|++.+...+.. + ...|..++.++.+.|++++|+..++++.+. ..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445556667777777777777777653220 2 237888888999999999999999988872 11
Q ss_pred CCCC-HHhH----HHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 512 WNPD-IISY----TSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 512 ~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+.|+ ...| ...+.++...|++++|+..|+++++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2774 5578 8899999999999999999999876
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=1.1e-06 Score=70.27 Aligned_cols=135 Identities=14% Similarity=-0.032 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----
Q 008022 445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-LD----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD---- 515 (581)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 515 (581)
..++..+...+...|++++|...+++....... ++ ..++..++..+...|++++|.+.++++.+.....++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346777888899999999999999998865211 11 246888999999999999999999997652211112
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 516 IISYTSLLWGICNSGGMQEAFIYLQKMLNE----GICPN-FATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
..++..++..+...|++++|...++++++. +..+. ...+..+...+...|++++|.+.+++.++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 457788899999999999999999998653 11111 34567788889999999999999998764
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=1.9e-06 Score=66.52 Aligned_cols=97 Identities=11% Similarity=-0.021 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-------------HHhHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 008022 480 AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-------------IISYTSLLWGICNSGGMQEAFIYLQKMLNE- 545 (581)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 545 (581)
...+...+..+.+.|++++|+..|+++.+ +.|+ ...|..++.++.+.|++++|+..++++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 34567778889999999999999999988 4454 238999999999999999999999999883
Q ss_pred ----CCCCC-HHhH----HHHHHHHHhccCCCChHHHHHHHhh
Q 008022 546 ----GICPN-FATW----NVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 546 ----~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
.+.|+ ...| .....++...|++++|+..+++.++
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11676 4567 8889999999999999999998875
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=6e-06 Score=78.65 Aligned_cols=133 Identities=10% Similarity=-0.050 Sum_probs=95.8
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008022 374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPN--------------ITTYNELLDGLLRVNRVKEAFELVTEIEKC 439 (581)
Q Consensus 374 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 439 (581)
....+..+...+.+.|+++.|...|++..+...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455677777888888888888888888876431111 467777888888888888888888888876
Q ss_pred CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHhc
Q 008022 440 GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ-LLDRIRG 508 (581)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 508 (581)
. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++...|+++++.+ .+.++..
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 5567778888888888888888888888888764 3355677778888888888777653 4444443
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.39 E-value=1.1e-05 Score=61.50 Aligned_cols=93 Identities=11% Similarity=-0.024 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHH
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNI---VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD---AITFNIII 487 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 487 (581)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...+++++... +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345667778888888888888887753 2233 467777888888889999998888888764 223 56778888
Q ss_pred HHHHhcCCHHHHHHHHHHHhc
Q 008022 488 YAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.++...|++++|+..++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888889999999999988887
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.39 E-value=6.2e-06 Score=65.93 Aligned_cols=101 Identities=16% Similarity=0.059 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKC--------G---------IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
.+......+.+.|++++|+..|...+.. . .+.+...|..+..+|.+.|++++|+..+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555566666666666666665543 0 1234467888888999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 008022 475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDI 516 (581)
Q Consensus 475 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 516 (581)
. +.+...|..++.+|...|++++|+..|+++.+ +.|+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~---l~p~~ 130 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR---NHPAA 130 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCGGG
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh---cCCCC
Confidence 5 55788899999999999999999999999988 56753
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=2.9e-06 Score=78.06 Aligned_cols=88 Identities=13% Similarity=-0.043 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHhHHH
Q 008022 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICP-NFATWNV 556 (581)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 556 (581)
+..+|..++.+|.+.|++++|++.++++.+ +.| +...+..++.+|...|++++|+..|+++++. .| +...+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~ 346 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 445677777777777777777777777777 345 5667777777777777777777777777764 34 3445555
Q ss_pred HHHHHHhccCCCChH
Q 008022 557 LVRSLFSNLGHLGPV 571 (581)
Q Consensus 557 l~~~~~~~g~~~~a~ 571 (581)
+..++...++.+++.
T Consensus 347 l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=1.4e-06 Score=83.26 Aligned_cols=120 Identities=13% Similarity=-0.023 Sum_probs=94.9
Q ss_pred hHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 008022 3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS 82 (581)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (581)
..+.++|++++|...|++.++..+. +..++..+..+|.+.|++++|++.++++.+..+ .+...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 3567889999999999999987544 788999999999999999999999999998765 57788888999999999999
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHH
Q 008022 83 MINPIYSNMKRDGMEPNVFTYNILLKA--LCKNNRVDGAYKLLVE 125 (581)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~ 125 (581)
+|...|+++.+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999988764 3445556666555 7788999999998883
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=5.1e-06 Score=76.37 Aligned_cols=121 Identities=9% Similarity=-0.038 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008022 413 YNELLDGLLRVNRVKEAFELVTEIEKC---------------GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK 477 (581)
Q Consensus 413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 477 (581)
+..+...+.+.|++++|++.|++.++. ..+.+...|..+..+|.+.|++++|++.++++++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 455566666777777777777766641 113346778888999999999999999999999875 4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHH
Q 008022 478 LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFI 537 (581)
Q Consensus 478 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 537 (581)
.+...+..++.+|...|++++|++.++++.+ +.| +...+..+..++...++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE---IAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999988 456 56677778878777777776654
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=5.6e-05 Score=71.82 Aligned_cols=199 Identities=8% Similarity=-0.094 Sum_probs=142.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCc----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 008022 276 LIHGLCSNGSMDEAVSVSYQMEENSCPPN----------------VTTYSALIDGFAKAGNLLGASQIWNRMISNG-CSP 338 (581)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 338 (581)
-...+...|++++|.+.+..+.+...... ...+..++..|...|++++|.+.+..+...- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34567889999999999999988643211 1236778899999999999999999876531 112
Q ss_pred Chh----hHHHHHHHHHccCChhHHHHHHHHHhhC----C-CCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC--CC-
Q 008022 339 NVV----AYTCMVKVLCQNNMFHQAHSLIEKMAFE----N-CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY--EC- 406 (581)
Q Consensus 339 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 406 (581)
+.. +.+.+...+...|+++.+..+++..... + ......++..+...+...|++++|..+++.+... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 2233334455678999999999887542 2 1223456778899999999999999999987432 11
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022 407 --LPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIE 474 (581)
Q Consensus 407 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 474 (581)
+.....+..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...+.+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 112347788899999999999999999987642 11111 245566667777889999999999888764
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.2e-06 Score=64.89 Aligned_cols=94 Identities=16% Similarity=0.070 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-------
Q 008022 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN------- 550 (581)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------- 550 (581)
+...+..++..+...|++++|++.++++.+ ..| +...+..++.++...|++++|+..++++++. .|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT---AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHH
Confidence 445667777777788888888888887776 345 5667777777888888888888888887763 444
Q ss_pred HHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022 551 FATWNVLVRSLFSNLGHLGPVYILDDI 577 (581)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 577 (581)
...+..+..++...|+.++|++.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 445566666777777777776655443
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.33 E-value=5.6e-05 Score=73.61 Aligned_cols=172 Identities=11% Similarity=0.039 Sum_probs=132.4
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022 390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR----------VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG 459 (581)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (581)
..++|++.++.+...+ +.+...|+.-..++...|+ ++++++.++.+.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3457788888887765 3345566666666666666 889999999998874 557778888788888888
Q ss_pred --CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc------
Q 008022 460 --MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG-KVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS------ 529 (581)
Q Consensus 460 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~------ 529 (581)
+++++++.++++++.. +-+..+|+.-..++.+.| .++++++.++++.+ ..| +..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhcccccc
Confidence 6799999999999876 558888998888888888 89999999999988 456 777888887777653
Q ss_pred --------CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhccCCCC
Q 008022 530 --------GGMQEAFIYLQKMLNEGICP-NFATWNVLVRSLFSNLGHLG 569 (581)
Q Consensus 530 --------g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 569 (581)
+.++++++++++++.. .| +...|..+...+...++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5679999999999874 45 46677777777777666544
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.32 E-value=2.3e-06 Score=77.84 Aligned_cols=146 Identities=12% Similarity=-0.026 Sum_probs=70.1
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 008022 376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV 455 (581)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (581)
..+..+...+...|++++|...|++..... |+... +...++.+++...+ ...+|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 344555556666666666666666655432 22211 11122222222111 113666777778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHH-HHccCCHH
Q 008022 456 CRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWG-ICNSGGMQ 533 (581)
Q Consensus 456 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~ 533 (581)
.+.|++++|+..+++++... +.+...+..++.+|...|++++|+..|+++.+ +.| +...+..+... ....+..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887764 44677788888888888888888888888877 445 34455555544 23445666
Q ss_pred HHHHHHHHHHH
Q 008022 534 EAFIYLQKMLN 544 (581)
Q Consensus 534 ~A~~~~~~~~~ 544 (581)
.+...|.+|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 77777777765
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.31 E-value=1.7e-06 Score=66.66 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhcCCCCCC-CHHhHHHHHHHH
Q 008022 458 AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV----------NNAIQLLDRIRGGGEWNP-DIISYTSLLWGI 526 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 526 (581)
.+.+++|.+.+++.+... +.+...|..++.++...+++ ++|+..|+++.+ +.| +..+|..++.+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHHHH
Confidence 344555555555555543 33555555555555554443 366666666665 445 445566666666
Q ss_pred Hcc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008022 527 CNS-----------GGMQEAFIYLQKMLNEGICPNFATWNVLVRS 560 (581)
Q Consensus 527 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 560 (581)
... |++++|++.|+++++ +.|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 554 366777777777766 45665555444433
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=2.7e-06 Score=77.42 Aligned_cols=147 Identities=11% Similarity=-0.065 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022 410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA 489 (581)
Q Consensus 410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 489 (581)
...+..+...+.+.|++++|...|+..... .|+... +...|+.+++...+ ...++..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 344556666677778888888888877764 333321 12233333333222 11378889999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHH-HHhccC
Q 008022 490 YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF-ATWNVLVRS-LFSNLG 566 (581)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~g~ 566 (581)
|.+.|++++|+..++++.+ +.| +...|..++.+|...|++++|+..|+++++ +.|+. ..+..+... ....+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 456 678999999999999999999999999987 35553 444444444 233466
Q ss_pred CCChHHHHHHHhhc
Q 008022 567 HLGPVYILDDIMAN 580 (581)
Q Consensus 567 ~~~a~~~~~~~~~~ 580 (581)
.+++.+.+++++..
T Consensus 315 ~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 315 YQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhCC
Confidence 77888888887753
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.21 E-value=5.2e-05 Score=58.31 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHH
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNA 499 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 499 (581)
+++++|++.|++..+.| .++.. +...|...+.+++|.+.|++..+.| +......+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777766 33332 5555666667777888887777754 56667777777777 6788888
Q ss_pred HHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcC
Q 008022 500 IQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAFIYLQKMLNEG 546 (581)
Q Consensus 500 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 546 (581)
.++|++..+. -++..+..|...|.. .+++++|..+|+++.+.|
T Consensus 81 ~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888887772 356667777777777 678888888888887765
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=7.3e-05 Score=72.82 Aligned_cols=173 Identities=11% Similarity=0.065 Sum_probs=131.1
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCC----------hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 008022 355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGR----------VDWAMKLLDQMKQYECLPNITTYNELLDGLLRVN 424 (581)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (581)
..++|+..++++...+ |.+..+|+.--.++...|+ ++++++.++.+.+.+ +-+...|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456677777777664 5555666655555555555 788888888887765 446677887777888888
Q ss_pred --CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 008022 425 --RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG-MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ-------- 493 (581)
Q Consensus 425 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 493 (581)
+++++++.++.+.+.. +-+..+|+.-...+.+.| .++++.+.++++++.. +.+..+|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999998875 557788888777778888 8899999999998875 45778888887777663
Q ss_pred ------CCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHH
Q 008022 494 ------GKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQE 534 (581)
Q Consensus 494 ------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 534 (581)
+.++++++.+.++.. +.| +...|..+.+.+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~---~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH---HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHh---hCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999988 567 67789999888888777444
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.2e-06 Score=62.44 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-------H
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-------I 516 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------~ 516 (581)
+...+..+...+...|++++|.+.+++.+... +.+...+..++.++...|++++|++.++++.+ +.|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHH
Confidence 34556667777778888888888888887764 44677777888888888888888888888877 4453 3
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHH
Q 008022 517 ISYTSLLWGICNSGGMQEAFIYLQ 540 (581)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~ 540 (581)
..+..+..++...|+++.|+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 445555555555555555444333
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=3.7e-05 Score=72.96 Aligned_cols=127 Identities=9% Similarity=-0.067 Sum_probs=89.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----C--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-Cc-CHHHHH
Q 008022 419 GLLRVNRVKEAFELVTEIEKC-----G--IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-----GT-KL-DAITFN 484 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 484 (581)
.+...|++++|+.++++.++. | .+....+++.+...|...|++++|..++++.+.. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888876542 1 1123457788888888899999998888887743 21 12 234578
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRG-----GGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.|+..|...|++++|+.+++++.+ .+.-.|+ ..+...+..++...+.+++|..+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999988888753 2222342 335567777788888999999999888653
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.06 E-value=1.4e-05 Score=59.37 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
...+..+...+...|++++|...+++.+... +.+...+..++.+|...|++++|+..|+++.+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444432 22333444444444444444444444444443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.02 E-value=5.7e-05 Score=53.03 Aligned_cols=60 Identities=27% Similarity=0.376 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.+..++..+...|++++|+..++++.+ ..| +...+..++.++...|++++|...++++.+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444444445555555555555555444 122 334444455555555555555555555544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.01 E-value=1.9e-05 Score=60.87 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=69.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008022 422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM----------VVEAFQLLGKMLIEGTKLDAITFNIIIYAYC 491 (581)
Q Consensus 422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (581)
+.+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++.+ +.+..+|..++.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3455677777777777664 4566677666666666655 468999999998875 447778888999988
Q ss_pred hcC-----------CHHHHHHHHHHHhcCCCCCCCHHhH
Q 008022 492 KQG-----------KVNNAIQLLDRIRGGGEWNPDIISY 519 (581)
Q Consensus 492 ~~g-----------~~~~A~~~~~~~~~~~~~~p~~~~~ 519 (581)
..| ++++|++.|+++.+ ++|+...|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHH
Confidence 764 89999999999998 67875544
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.99 E-value=0.00036 Score=53.56 Aligned_cols=108 Identities=9% Similarity=-0.096 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHH
Q 008022 390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAF 465 (581)
Q Consensus 390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 465 (581)
++++|.+.|++..+.+ .++.. +...|...+.+++|++.|+...+.| +......+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666555 22222 4455555556666777777666654 44555556666665 66777777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhc
Q 008022 466 QLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRG 508 (581)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 508 (581)
++|++..+.| ++..+..+...|.. .+++++|.+++++..+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 7777777654 45566667777766 6677777777777766
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.98 E-value=2.8e-05 Score=73.77 Aligned_cols=126 Identities=10% Similarity=-0.010 Sum_probs=94.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCC-HHhHH
Q 008022 454 GVCRAGMVVEAFQLLGKMLIE-----GT-KL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRG-----GGEWNPD-IISYT 520 (581)
Q Consensus 454 ~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~p~-~~~~~ 520 (581)
.+...|++++|+.++++.+.. |. .| -..+++.++.+|...|++++|+.+++++.+ .+.-.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999998854 21 11 245689999999999999999999998764 2333453 45789
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc---CCCCCH----HhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022 521 SLLWGICNSGGMQEAFIYLQKMLNE---GICPNF----ATWNVLVRSLFSNLGHLGPVYILDDIMA 579 (581)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 579 (581)
.|+..|...|++++|..+++++++- -+.|+. .+...+..++...+.+++|..+++++-+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988542 122442 3344556677778889999988887643
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.97 E-value=7.2e-05 Score=52.49 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL 522 (581)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l 522 (581)
+...+..+...+...|++++|...+++.+... +.+...+..++.++...|++++|+..++++.+ ..| +...+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCHHHHHHH
Confidence 45677888889999999999999999999875 45788899999999999999999999999988 446 56677777
Q ss_pred HHHHHccC
Q 008022 523 LWGICNSG 530 (581)
Q Consensus 523 ~~~~~~~g 530 (581)
..++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 77766543
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=6.7e-05 Score=55.61 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHH
Q 008022 463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQK 541 (581)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (581)
+|.+.+++++... +.+...+..++.+|...|++++|+..++++.+ ..| +...|..++.+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD---FDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5678888888764 45788999999999999999999999999998 456 577899999999999999999999999
Q ss_pred HHHc
Q 008022 542 MLNE 545 (581)
Q Consensus 542 ~~~~ 545 (581)
+++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9763
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.93 E-value=5.4e-05 Score=54.38 Aligned_cols=84 Identities=12% Similarity=0.020 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHH
Q 008022 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG-ICPNFATWNV 556 (581)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 556 (581)
+...+..++.+|...|++++|++.|+++.+ ..| +...|..++.+|...|++++|+..|+++++.. -.++......
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE---TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 455666666666666777777777766666 334 44566666666666777777777666665421 1234444444
Q ss_pred HHHHHHhcc
Q 008022 557 LVRSLFSNL 565 (581)
Q Consensus 557 l~~~~~~~g 565 (581)
+...+...+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 444444433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.90 E-value=3.7e-05 Score=55.27 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=48.5
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+.+...+..+...+...|++++|+..|+++++.. +.+...|..++.+|...|++++|++.++++.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456667777777778888888888888877764 34566777778888888888888888877765
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.82 E-value=1.9e-07 Score=84.15 Aligned_cols=425 Identities=12% Similarity=0.075 Sum_probs=211.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108 (581)
Q Consensus 29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (581)
.+.+|..++.++.+.|...+|++-|-+. .|+..|..++.+..+.|.+++-...+....+. ..++.+=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 5678888999999888888887655322 45567888999999999999999988877665 344455568888
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHH
Q 008022 109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLL 188 (581)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (581)
+|++.++..+..+++ ..|+..-...+.+-|...|.++.|.-+|..++ -|..|...+.+.|++..|.+.-
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is----N~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----NFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC----CCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc----cHHHHHHHHHHHHHHHHHHHHH
Confidence 999988866543332 23566666777788888888877777666542 1223333344444444443322
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008022 189 CEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLP 268 (581)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (581)
++ --++.||..+-.+|...+.+..|.-.--.++-. +.-...++..|-..|.+++.+.+++.-.... ..
T Consensus 194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rA 261 (624)
T 3lvg_A 194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RA 261 (624)
T ss_dssp TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TC
T ss_pred Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-ch
Confidence 11 114445555555555555554443332222211 1112223333444444444444444433211 11
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCC------CcHHhHHHHHHHHHhcCCHHHHHHHH-------------
Q 008022 269 NVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN-SCP------PNVTTYSALIDGFAKAGNLLGASQIW------------- 328 (581)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~------------- 328 (581)
....|+-|.-.|++- ++++..+.++..-.+ ++| -....|..+...|..-.+++.|....
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~F 340 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF 340 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGG
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHH
Confidence 233343343333332 223222222211110 111 01223444444444444444332211
Q ss_pred HHHHhCCCCCChhh---------------HHHHHHHHHccCChhHHHHHHHHHhhC----------CCCCChhhHHHHHH
Q 008022 329 NRMISNGCSPNVVA---------------YTCMVKVLCQNNMFHQAHSLIEKMAFE----------NCPPNTVTFNTFIK 383 (581)
Q Consensus 329 ~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~ 383 (581)
.+++.. ..|... .+.|+.++...=+..++.+++++.-.. .-..+...-.++-.
T Consensus 341 kdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~ 418 (624)
T 3lvg_A 341 KDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNN 418 (624)
T ss_dssp TTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHH
T ss_pred HHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHH
Confidence 000000 012222 233333333333444444444432110 00112233334445
Q ss_pred HhhcCCChHHHHH------------HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 008022 384 GLCGCGRVDWAMK------------LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTI 451 (581)
Q Consensus 384 ~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 451 (581)
.|....|++.-.. +-+++.++ +-...-......|.+.+++++++++.++ ...|.-.
T Consensus 419 L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDA 486 (624)
T 3lvg_A 419 LFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDA 486 (624)
T ss_dssp HHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGG
T ss_pred HHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHH
Confidence 5555555543322 22222221 2223334445556667777776654321 1123333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQL 502 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 502 (581)
+......|+.+-|.++++-..+.| +..+|...+..|...=+++-++++
T Consensus 487 ietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 487 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp GTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 445566788888888888887755 556677777777776677776665
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.59 E-value=0.0084 Score=53.51 Aligned_cols=143 Identities=13% Similarity=-0.022 Sum_probs=88.9
Q ss_pred CCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh---cC--CHHH---HHHHHHHHHH
Q 008022 407 LPNITTYNELLDGLL--RVN---RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR---AG--MVVE---AFQLLGKMLI 473 (581)
Q Consensus 407 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~---a~~~~~~~~~ 473 (581)
+.+...|...+++.. ..+ ...+|..+|++..+.. |-....+..+..+|.. .+ .... ....+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 345555655554432 222 3467777777777752 2223444433333321 11 1111 1111221111
Q ss_pred -CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 474 -EGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 474 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
...+.++.++..+...+...|++++|+..++++.. ++|+...|..++..+.-.|++++|.+.|+++.. +.|...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~---Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID---LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 11255777888887777778999999999999998 458888888888899999999999999999987 467777
Q ss_pred hHH
Q 008022 553 TWN 555 (581)
Q Consensus 553 ~~~ 555 (581)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 664
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.47 E-value=0.0015 Score=49.76 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHH
Q 008022 462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAF 536 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 536 (581)
..+.+.|.+....+ +++..+...++.++++++ ++++++.+++.+.+.. .| +...+-.+..++.+.|++++|+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 33444444444443 345555555555555555 4445555555555411 13 2334445555555556666666
Q ss_pred HHHHHHHH
Q 008022 537 IYLQKMLN 544 (581)
Q Consensus 537 ~~~~~~~~ 544 (581)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655555
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.42 E-value=0.00056 Score=63.74 Aligned_cols=88 Identities=7% Similarity=-0.126 Sum_probs=66.3
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCc-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCC-HHhHHHHH
Q 008022 457 RAGMVVEAFQLLGKMLIE---GTKL-D---AITFNIIIYAYCKQGKVNNAIQLLDRIRG-----GGEWNPD-IISYTSLL 523 (581)
Q Consensus 457 ~~~~~~~a~~~~~~~~~~---~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~p~-~~~~~~l~ 523 (581)
..|++++|+.++++.+.. -+.| + ..+++.++.+|...|++++|+.+++++.+ .+.-.|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888887753 1112 2 34678889999999999999999988753 2333453 44788999
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 008022 524 WGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~~~~ 544 (581)
..|..+|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998854
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.41 E-value=0.0014 Score=45.67 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 478 LDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 478 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
.++..+..++.++...++ .++|..+++++.+ +.| ++.....++..+...|++++|+..|+++++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555543333 4555555555555 344 444555555555555555555555555554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0039 Score=55.61 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH
Q 008022 442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT 520 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 520 (581)
+.+..++..+...+...|++++|...+++++..+ |+...|..++..+.-.|++++|.+.++++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 5677888888777777899999999999999975 6777888888999999999999999999998 678776653
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.39 E-value=0.00049 Score=49.11 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=34.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAI-TFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
...+...|++++|.+.+++++... +.+.. .+..++.+|...|++++|++.|+++.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344556666666666666666553 33445 566666666666666666666666665
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.34 E-value=0.0049 Score=42.96 Aligned_cols=67 Identities=10% Similarity=-0.000 Sum_probs=52.6
Q ss_pred cccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022 442 QLNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG 509 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (581)
+.++..+..+..++...++ .++|..++++.+... +.+......++..+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777777777765554 688888888888875 557778888888888899999999999988873
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.33 E-value=0.0026 Score=59.43 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCc-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCC-HHh
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEG---TKL-D---AITFNIIIYAYCKQGKVNNAIQLLDRIRG-----GGEWNPD-IIS 518 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~p~-~~~ 518 (581)
+..+.+.|++++|+.++++.+... +.| + ..+++.++.+|...|++++|+.+++++.. .++-.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999999988541 122 2 34688889999999999999999998764 2334453 447
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 519 YTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
++.|+..|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998853
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.16 E-value=0.0037 Score=47.54 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHH
Q 008022 426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG---MVVEAFQLLGKMLIEGTKL--DAITFNIIIYAYCKQGKVNNAI 500 (581)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 500 (581)
...+.+.|.+....+ +++..+...+..++++.+ +.++++.+++...+.. .| +...+..++-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345555666555555 467777777777888877 5668888888888764 23 4667777888888888888888
Q ss_pred HHHHHHhcCCCCCCC
Q 008022 501 QLLDRIRGGGEWNPD 515 (581)
Q Consensus 501 ~~~~~~~~~~~~~p~ 515 (581)
+.++.+.+ +.|+
T Consensus 92 ~y~~~lL~---ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ---TEPQ 103 (152)
T ss_dssp HHHHHHHH---HCTT
T ss_pred HHHHHHHh---cCCC
Confidence 88888888 5674
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.14 E-value=0.043 Score=46.86 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHcc-
Q 008022 461 VVEAFQLLGKMLIEGTKLD---AITFNIIIYAYCK-----QGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNS- 529 (581)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~- 529 (581)
...|...++++++. .|+ ...|..++..|.. -|+.++|.+.|+++.+ +.| +..++..+++.++..
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhc
Confidence 57788888888885 444 5678888888888 4999999999999998 667 367778888888874
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 008022 530 GGMQEAFIYLQKMLNEGIC 548 (581)
Q Consensus 530 g~~~~A~~~~~~~~~~~~~ 548 (581)
|+.++|.+++++.+.....
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999886544
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.12 E-value=6.1e-05 Score=68.35 Aligned_cols=265 Identities=11% Similarity=0.108 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022 64 TVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS 143 (581)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (581)
.+.+|..+.++....+...+|++.|- + ..|+..|..++....+.|.+++-.+.+.-.++..- ++.+-+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 45567777777777777766665441 1 23555677777777777777777777766555422 4445567777
Q ss_pred HHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHH
Q 008022 144 SICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGIL 223 (581)
Q Consensus 144 ~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 223 (581)
+|.+.++..+-.+++. .++..-...+..-|...|.++.|.-+|..+ .-|..|...+.+.|++..|.+.-
T Consensus 125 ayAk~~rL~elEefl~--~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHTSCSSSTTTSTTS--CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHhhCcHHHHHHHHc--CCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777655443322 344555556666666667766666555332 22334444556666666665433
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 008022 224 GQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPP 303 (581)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 303 (581)
++ ..++.+|..+-.+|...+.+.-|.-.--.+.-. +.....++..|-..|.+++-+.+++.-... -..
T Consensus 194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErA 261 (624)
T 3lvg_A 194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERA 261 (624)
T ss_dssp TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTC
T ss_pred Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-Cch
Confidence 22 337889999999999999888765543333322 112334566788899999999998887643 245
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHHccCChhHHH
Q 008022 304 NVTTYSALIDGFAKAGNLLGASQIWNRMISN-GCS------PNVVAYTCMVKVLCQNNMFHQAH 360 (581)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 360 (581)
....|+.+.-.|++- .+++..+.++..-++ +++ -....|..++..|..-.+++.|.
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 777888888888775 345554444432221 221 13445677777777777777654
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.10 E-value=0.0043 Score=44.00 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=45.5
Q ss_pred hHhhhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008022 3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEG-VFISVINSYRRVGLAEQALKMFYRIREFGL 61 (581)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 61 (581)
..+.+.|++++|...|+..++..+. +.. .+..+..+|...|++++|++.|+++....+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3567788888888888888877543 666 888888888888888888888888887654
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.0023 Score=59.60 Aligned_cols=86 Identities=9% Similarity=-0.039 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHHHc---CCcc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcC-HHHHHHHHH
Q 008022 423 VNRVKEAFELVTEIEKC---GIQL----NIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-----GT-KLD-AITFNIIIY 488 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~ 488 (581)
.|++++|..++++..+. -+.| ...+++.+..+|...|++++|+.++++++.. |. .|+ ..+++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888888876542 1112 2457788888899999999999998888743 21 122 345888999
Q ss_pred HHHhcCCHHHHHHHHHHHhc
Q 008022 489 AYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~ 508 (581)
.|...|++++|+.+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988765
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.96 E-value=0.0065 Score=43.56 Aligned_cols=66 Identities=9% Similarity=0.083 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-----CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE-----WNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+..-+..++..+.+.|+++.|..+++.+.+... -.+....+..++.++.+.|+++.|+.+++++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445566666666666666666665544210 012344566666666666666666666666665
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.92 E-value=0.45 Score=48.43 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=69.8
Q ss_pred HHccCChhHHHHHHHHHhhCCCCCChhhHHHH--HHHhhcCCChHHHHHHHHHHhhCCCCCChh-hHH---HHHHHHHhc
Q 008022 350 LCQNNMFHQAHSLIEKMAFENCPPNTVTFNTF--IKGLCGCGRVDWAMKLLDQMKQYECLPNIT-TYN---ELLDGLLRV 423 (581)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~ 423 (581)
+.-.|+.+....++..+.... +..+...+ .-++...|+.+.+..+.+.+... .+.. -|. .+.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 445556555556655554321 22222222 22333556666666666666542 1222 121 223345566
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH-HHHHHH
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV-NNAIQL 502 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 502 (581)
|+.....++++.+.... ..+......+.-++...|+.+.+.++++.+...+ .|....-..++-+....|.. .++++.
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 66655555666666531 2222222223333344555555555555444433 33333233333333333433 456666
Q ss_pred HHHHhc
Q 008022 503 LDRIRG 508 (581)
Q Consensus 503 ~~~~~~ 508 (581)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 666664
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=0.0048 Score=57.63 Aligned_cols=92 Identities=10% Similarity=0.076 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---Ccc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-Cc-CHHH
Q 008022 417 LDGLLRVNRVKEAFELVTEIEKCG---IQL----NIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-----GT-KL-DAIT 482 (581)
Q Consensus 417 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~ 482 (581)
+..+...|++++|+.++++..+.. +.| ...+++.++..|...|++++|+.++++++.. |. .| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788899999888876431 122 2457788888899999999999999888743 21 12 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
++.++..|...|++++|+.+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988764
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.86 E-value=0.0082 Score=43.02 Aligned_cols=68 Identities=3% Similarity=-0.162 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 008022 28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFG------LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDG 95 (581)
Q Consensus 28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (581)
.+...+..++..+.+.|++..|..+|+.+.+.. ..+...++..+..++.+.|+++.|...++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 467778888999999999999999998887531 12456678888888888888888888888887663
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.083 Score=54.62 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=22.1
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 211 CDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRM 261 (581)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (581)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4445555555543321 23445555555555555555555555443
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.51 E-value=0.058 Score=39.37 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCH
Q 008022 458 AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN---AIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGM 532 (581)
Q Consensus 458 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 532 (581)
......+.+.|.+....| .++..+-..++.++.++.+... ++.+++.+.... .| .....-.|+.++.+.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence 334455555565555544 3666777777777777766555 777777766621 23 233455666677777777
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 008022 533 QEAFIYLQKMLNEGICPN 550 (581)
Q Consensus 533 ~~A~~~~~~~~~~~~~~~ 550 (581)
++|+++++.+++ +.|+
T Consensus 91 ~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 91 EKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHH--hCCC
Confidence 777777777776 3554
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.43 E-value=0.99 Score=46.01 Aligned_cols=272 Identities=13% Similarity=0.069 Sum_probs=147.1
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCcc--cHHHHHHHHHccCCHHHHHHHHHHHHhCCC-------CCCHHhHHHHHHH
Q 008022 209 SLCDVGNVETSLGILGQMFVRGCNPNIH--SFTSLLKGYLLGGRTHEASDLWNRMIREGF-------LPNVVAYSTLIHG 279 (581)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 279 (581)
+....|+.++++.++......+...+.. .-..+.-+....|..+++.+++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3456778888877776655421011211 222233344555665677787776665311 0111112223333
Q ss_pred HHhcCC-hhhHHHHHHHHHhCCCCCcHHhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHccC
Q 008022 280 LCSNGS-MDEAVSVSYQMEENSCPPNVTTYS--ALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKV--LCQNN 354 (581)
Q Consensus 280 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 354 (581)
++..|. -+++.+.+..+..... +...... .+...+.-.|+.+....++..+.+. .+......+..+ +...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 333443 2456666666665421 1111112 2333455667878788888877664 233444444443 44678
Q ss_pred ChhHHHHHHHHHhhCCCCCChhh--HHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022 355 MFHQAHSLIEKMAFENCPPNTVT--FNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL 432 (581)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 432 (581)
+.+.+..+++.+.... .|.... ...+.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8899999988887642 222211 1234567889999888888998887632 22333233333344556777777777
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022 433 VTEIEKCGIQLNIVTYNTILHGVCRAGMV-VEAFQLLGKMLIEGTKLDAITFNIIIYAY 490 (581)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (581)
+..+.+.+ .|....-..+.-+....|+. .++..++..+.. .++..+-..-+.++
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 77666653 45444444444444445554 678889988875 34555443333333
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.41 E-value=0.027 Score=41.11 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHH
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE---AFQLLGKMLIEGTKL--DAITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 498 (581)
.....+.+-|......| .++..+-..+..++.+..+... ++.+++.+.+.+ .| .......++-++.+.|+|++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555666555555 3666666667777777776655 888888887764 23 45567778888889999999
Q ss_pred HHHHHHHHhcCCCCCCC
Q 008022 499 AIQLLDRIRGGGEWNPD 515 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p~ 515 (581)
|.+.++.+.+ +.|+
T Consensus 93 A~~~~~~lL~---~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQ---TEPQ 106 (126)
T ss_dssp HHHHHHHHHH---HCTT
T ss_pred HHHHHHHHHH---hCCC
Confidence 9999999888 5563
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.18 Score=39.48 Aligned_cols=130 Identities=11% Similarity=0.076 Sum_probs=85.4
Q ss_pred HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH
Q 008022 382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV 461 (581)
Q Consensus 382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (581)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455678888888887654 4677888888888888888888888877653 22344455667887
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 008022 462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQK 541 (581)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (581)
+.-.++-+.....| . ++....++...|+++++++++.+.-. -|... ......|-.+.|.++.++
T Consensus 77 e~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHH
Confidence 77776666665554 2 34445566677888888888866544 12211 112235667777777766
Q ss_pred H
Q 008022 542 M 542 (581)
Q Consensus 542 ~ 542 (581)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.21 E-value=0.051 Score=40.72 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=71.6
Q ss_pred cccHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCcCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHhc
Q 008022 442 QLNIVTYNTILHGVCRAGMV------VEAFQLLGKMLIEGTKLDAI-TFNIIIY------AYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 508 (581)
+-|..+|-..+....+.|++ ++.+++|+++... ++|+.. .|...+. .+...+|+++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34556666666666666666 6667777777664 344321 1111111 12345788899999988876
Q ss_pred CCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022 509 GGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF 562 (581)
Q Consensus 509 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (581)
. + +.=...|...+..-.++|+...|.+++.+++..+-. +...+...++.+.
T Consensus 89 ~-h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl~ 139 (161)
T 4h7y_A 89 N-C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNLN 139 (161)
T ss_dssp H-C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHHH
T ss_pred H-h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhhh
Confidence 3 1 222667777777778899999999999999876533 3344455554443
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.045 Score=56.63 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=61.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 008022 41 RRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120 (581)
Q Consensus 41 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 120 (581)
...|++++|.++...+ .+...|..+...+.+.++++.|.++|..+.. |..+...+...|+.+...
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 3445555555443221 4556677777777777777777777766542 334444444455555555
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 008022 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCE 190 (581)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (581)
++-+.....| -+.....+|...|++++|+++ |.+.+++++|..+-+.
T Consensus 728 ~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~-----------------~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKDAETTG------KFNLAFNAYWIAGDIQGAKDL-----------------LIKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH-----------------HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcC------chHHHHHHHHHcCCHHHHHHH-----------------HHHcCChHHHHHHHHH
Confidence 5444444432 123333445556666666554 5567777777776654
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.91 E-value=0.32 Score=35.62 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=23.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+......|.-++-.+++..++.. .+|++..+..++.+|.+.|+..+|.+++.++-+
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33344444444444444443332 234444444444444444444444444444443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.91 E-value=0.19 Score=37.68 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022 424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475 (581)
Q Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 475 (581)
+++++|.++|+.+++.+-. =...|......-.+.|++..|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 5566666666666543212 14444444444455666666666666666654
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.45 Score=37.24 Aligned_cols=102 Identities=11% Similarity=0.141 Sum_probs=63.2
Q ss_pred HHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 008022 349 VLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKE 428 (581)
Q Consensus 349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (581)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345667777777776654 4567777777777777777777777776653 2344445556677666
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022 429 AFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM 471 (581)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 471 (581)
-.++-+.....| . ++.....+...|+++++.+++.+.
T Consensus 79 L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555555554443 1 223334455677777777777443
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.87 E-value=0.064 Score=45.84 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=63.6
Q ss_pred ChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCcc
Q 008022 10 EIDGVQYLLQQMKVEGVSC-SEGVFISVINSYRR-----VGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAE-NRFS 82 (581)
Q Consensus 10 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (581)
....|..++++.++.++.. +...|..+...|.. -|+.++|.+.|++.+..++.-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3456777777777765442 35577777887877 388888888888888876544577777777777774 8888
Q ss_pred hHHHHHHHHHhCCCC
Q 008022 83 MINPIYSNMKRDGME 97 (581)
Q Consensus 83 ~a~~~~~~~~~~~~~ 97 (581)
.+...+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 888888888877544
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.71 E-value=0.4 Score=35.14 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=96.6
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHH
Q 008022 386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAF 465 (581)
Q Consensus 386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 465 (581)
...|..++..++..+.... .+..-+|.++--....-+-+-..++++.+-+. .| ....|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 3457777777777776652 34445555555555555555555555544332 11 12456666666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 466 QLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
..+-.+ ..+.......+..+...|+-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++.++-+.
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 666554 33556667777888999999999999998654 35678899999999999999999999999999998
Q ss_pred CCC
Q 008022 546 GIC 548 (581)
Q Consensus 546 ~~~ 548 (581)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 864
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.11 E-value=0.62 Score=42.78 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHhHH
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN-----EGICPNFATWN 555 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 555 (581)
...++..+...|++++|+..+..+.. ..| +...|..++.+|.+.|+..+|++.|+++.+ .|+.|.+.+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~---~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 45567778889999999999998887 456 777899999999999999999999988743 48899887754
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.18 Score=50.11 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=32.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022 488 YAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKM 542 (581)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (581)
..|...|+++-|+++.+++.. ..| +..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344456666666666666665 445 4556666666666666666666666655
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.76 E-value=2.7 Score=39.31 Aligned_cols=50 Identities=8% Similarity=0.101 Sum_probs=33.2
Q ss_pred CChhhHHHHHHHHHhC-----CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008022 284 GSMDEAVSVSYQMEEN-----SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMIS 333 (581)
Q Consensus 284 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (581)
|+++.|++.+..+.+. +..........++..|...++++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777776665542 2344566677777888888888877776665544
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.56 E-value=0.96 Score=33.21 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 442 QLNIVTYNTILHGVCRAGMV---VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.|+..+--.+..++.+..+. .+++.+++.+.+.+..-....+..++-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555544455555555433 45666666666554222345556666666667777777777776666
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=2.5 Score=39.56 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022 44 GLAEQALKMFYRIRE-----FGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD 94 (581)
Q Consensus 44 g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (581)
|++++|++.+-.+.+ .+..........++..|...|+++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567777766644442 223345667777778888888887777766665544
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.89 E-value=5.2 Score=39.12 Aligned_cols=200 Identities=10% Similarity=-0.028 Sum_probs=107.1
Q ss_pred CChhhHHHHHHHHHhCCCCCcHHhHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 008022 284 GSMDEAVSVSYQMEENSCPPNVTTYSALID----GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA 359 (581)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 359 (581)
.+.+.|...+....+.. ..+......+-. .....+...++...+....... ++.....-.+....+.++++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788988888876543 223333222222 2233342456666666655432 3444444455555677999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008022 360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC 439 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 439 (581)
...|+.+.... .......--+..+....|+.++|..+|..+... . ..|..+. ..+.|..-.. . . .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~Lg~~~~~-~----~--~ 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRIGEEYEL-K----I--D 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHTTCCCCC-C----C--C
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHcCCCCCC-C----C--C
Confidence 99998886542 123444455667778889999999999988752 1 1233332 1222221000 0 0 0
Q ss_pred CCcc---cHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022 440 GIQL---NIV---TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLD 504 (581)
Q Consensus 440 ~~~~---~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (581)
...+ ... .-...+..+...|....|...+..+... .+......+.......|.++.++....
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0000 000 0112234466778888888777776653 233333445555556666666654443
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.86 E-value=0.83 Score=33.55 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=58.4
Q ss_pred CCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 008022 475 GTKLDAITFNIIIYAYCKQGKV---NNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICP 549 (581)
Q Consensus 475 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 549 (581)
+..|+..+-..++.++.++.+. .+++.+++.+... .| ....+-.|..++.+.|++++|+++.+.+++ +.|
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCC
Confidence 3478888888899999988754 5688899888772 35 345677888899999999999999999998 567
Q ss_pred CHH
Q 008022 550 NFA 552 (581)
Q Consensus 550 ~~~ 552 (581)
+..
T Consensus 110 ~N~ 112 (134)
T 3o48_A 110 NNK 112 (134)
T ss_dssp TCH
T ss_pred CCH
Confidence 643
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.49 Score=47.14 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=41.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022 453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
..+...|+++-|+++.++....- +.+..+|..|+.+|...|+++.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34556788888888888887763 4467788888888888888888888887764
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.52 E-value=1.7 Score=32.36 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 443 LNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
|+..+-..+..++.+..+ ..+++.+++.+.+.+..-....+..++-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443334444444433 234445555554433222333444444555555555555555555554
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.45 E-value=1.8 Score=32.30 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=41.7
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 008022 477 KLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN 550 (581)
Q Consensus 477 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 550 (581)
.|+..+-..++.++.++.+ ..+++.+++.+... .| .....-.|..++.+.|++++|+++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4566666666666666654 33566666666652 23 233444556667777777777777777766 3554
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.43 E-value=0.45 Score=36.55 Aligned_cols=114 Identities=9% Similarity=0.001 Sum_probs=65.7
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHH
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEG-VSCS-------EGVFISVINSYRRVGLAEQALKMFYRIREF--GLKPTVKIYNHI 71 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l 71 (581)
++.+...|.++.|+-+...++... .+++ ..++..++.++...|++..|...|+++++. ....+......+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 456778899999998888766521 1122 136677888999999999999999987642 111111111000
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008022 72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGN 128 (581)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (581)
. ....... ......+......+..++...+++++|+.+++.+..
T Consensus 107 -~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 107 -G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred -c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0 0000000 011133445555677788888888888888887644
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.37 E-value=1.1 Score=47.95 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC------------------
Q 008022 33 FISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD------------------ 94 (581)
Q Consensus 33 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------ 94 (581)
...++..+...|.++.|.++..... .++..--.+..++...|++++|..+|++....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 3344555555566555555443222 22222233345556666666666666554211
Q ss_pred --C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCc----chHHHHHHHHHccCCHHHHHHHHHHhC---C
Q 008022 95 --G--MEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDA----VSYTTIVSSICKLGQVEEARELAMRFG---S 163 (581)
Q Consensus 95 --~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~---~ 163 (581)
. ...-...|..++..+.+.+.++.+.++-....+...+.+. ..|..+++.+...|++++|...+...| .
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 0 0112235777888888888888888877766554221121 246778888888899998888776662 2
Q ss_pred CcchHHHHHHHHHhcCChh
Q 008022 164 GVSVYNALINGLCKEHKIE 182 (581)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~ 182 (581)
-......|+..++..+..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 2344555555555555433
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.34 E-value=1.6 Score=33.54 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022 481 ITFNIIIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
+.-..+..+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333445555555555555555555443
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.24 E-value=7.8 Score=41.57 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHH
Q 008022 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA----ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS 521 (581)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 521 (581)
.-|..++..+.+.+.++.+.++-..++....+.+. ..|..+.+.+...|++++|-..+..+... .-....+..
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~ 976 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHH
Confidence 34667777788888888888888777765322222 25677888888888999888888777651 123456667
Q ss_pred HHHHHHccCCHHH------------HHHHHHH-HHHc-CCCCCHHhHHHHHHHHHhccCCCChHHHH
Q 008022 522 LLWGICNSGGMQE------------AFIYLQK-MLNE-GICPNFATWNVLVRSLFSNLGHLGPVYIL 574 (581)
Q Consensus 522 l~~~~~~~g~~~~------------A~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (581)
|+..++..|..+. ..+++.. +... .....+..|..|..-....|++.+|..++
T Consensus 977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 7776666555433 3333322 2111 11112234444555556678888777554
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.04 E-value=0.93 Score=31.15 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022 31 GVFISVINSYRRV-G-LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108 (581)
Q Consensus 31 ~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (581)
+.+..-...|+.. . +.-+.++.++.+......|++.+..+.+++|.+.+++..|.++|+-++..- .+...+|..+++
T Consensus 9 eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 9 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3333334444433 2 455777777888777777888888888888888888888888888776542 233445666654
Q ss_pred H
Q 008022 109 A 109 (581)
Q Consensus 109 ~ 109 (581)
-
T Consensus 88 E 88 (109)
T 1v54_E 88 E 88 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.61 E-value=7.8 Score=35.27 Aligned_cols=244 Identities=9% Similarity=-0.023 Sum_probs=129.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHcc-CChhHHHHHHHHHhhCCCCCChhhH-
Q 008022 305 VTTYSALIDGFAKAGNLLGASQIWNRMISN-GCSP---NVVAYTCMVKVLCQN-NMFHQAHSLIEKMAFENCPPNTVTF- 378 (581)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 378 (581)
......+...|.+.|+.++..+++...... +..| .......++..+... +..+.-.++..+..+.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455677888899999999888888776443 1111 122455666666553 33344444444443321 1112222
Q ss_pred -----HHHHHHhhcCCChHHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCcccHH
Q 008022 379 -----NTFIKGLCGCGRVDWAMKLLDQMKQYECLPN-----ITTYNELLDGLLRVNRVKEAFELVTEIEKC--GIQLNIV 446 (581)
Q Consensus 379 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 446 (581)
..++..|...|++.+|.+++..+.+.-...| ...+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2577888888999998888888754211112 123445566777888888888888876532 2223333
Q ss_pred HHHH----HHHHHH-hcCCHHHHHHHHHHHHHCCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHH-HHhcCCCCCCCH
Q 008022 447 TYNT----ILHGVC-RAGMVVEAFQLLGKMLIEGTKLDAI----TFNIIIYAYCKQGKVNNAIQLLD-RIRGGGEWNPDI 516 (581)
Q Consensus 447 ~~~~----l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~p~~ 516 (581)
.-.. -...+. ..+++.+|...|-+....-...... ....++-+-.-.++..+-..++. ...... ..|+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCccH
Confidence 3221 122345 6788888888777665331111111 11112222222344444334332 222212 34666
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022 517 ISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552 (581)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (581)
..+..++.+ ...+++.+...+++.... .+..|+.
T Consensus 257 ~~l~~L~~a-~~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 257 DAMKSVAEA-SHKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHH-HHhcChH
Confidence 555556555 445667666666665533 2444544
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.52 E-value=1.7 Score=39.92 Aligned_cols=67 Identities=4% Similarity=0.030 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCcCHHH
Q 008022 415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-----GTKLDAIT 482 (581)
Q Consensus 415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 482 (581)
.++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|.+.|++..+. |+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455556666666666666665542 456666666666666666666666666665432 56665554
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.57 E-value=8.2 Score=33.70 Aligned_cols=187 Identities=11% Similarity=-0.002 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH---
Q 008022 11 IDGVQYLLQQMKVEGVS-CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINP--- 86 (581)
Q Consensus 11 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--- 86 (581)
.++.+.-++.-++.|.- -....+..+..-|.+++++++|++++..-. ..+.+.|+...|.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHH
Confidence 33334444444444311 234455566666777788888877664332 22334455444333
Q ss_pred -HHHHHHhCCCCCChhhHHHHHHHHHhcCCh-----hHHHHHHHHHhhCCC--CCCcchHHHHHHHHHccCCHHHHHHHH
Q 008022 87 -IYSNMKRDGMEPNVFTYNILLKALCKNNRV-----DGAYKLLVEMGNKGC--APDAVSYTTIVSSICKLGQVEEARELA 158 (581)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (581)
+.+...+.+.+++......++..+.....- .-..+...+..+.|- .-++..+..+...|.+.|++.+|...|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 344445556677777667777666543221 112222333333322 236677888888888999999988877
Q ss_pred HHhC-CCcchHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHH
Q 008022 159 MRFG-SGVSVYNALINGLCKE---HKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMF 227 (581)
Q Consensus 159 ~~~~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 227 (581)
-... .+...+..++.-+... |...++--.+-+. ++ -|.-.|+...|..+++...
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra--------------VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL--------------VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH--------------HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH--------------HH-HHHHhcCHHHHHHHHHHHH
Confidence 6332 2466666666655555 6555543222221 12 2334667777777776654
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.53 E-value=1.1 Score=37.83 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=76.0
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAEN 79 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 79 (581)
+..+.+.|++++|+.....-++..+. |......+++.++-.|+++.|.+-++.+.+..+. |....|..+|++-
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE---- 78 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA---- 78 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH----
Confidence 34678899999999999988887654 8889999999999999999999988888875533 2223455555432
Q ss_pred CcchHHHHHHHHHhCCCCC-----ChhhHHHHHHHHH--hcCChhHHHHHHHHHhhC
Q 008022 80 RFSMINPIYSNMKRDGMEP-----NVFTYNILLKALC--KNNRVDGAYKLLVEMGNK 129 (581)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 129 (581)
..=.+...-+-.| ...-...++.+.. ..|+.++|.++-++..+.
T Consensus 79 ------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1112222211111 1223334444443 458888888887777543
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.88 E-value=1.1 Score=37.83 Aligned_cols=116 Identities=15% Similarity=0.040 Sum_probs=65.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN 498 (581)
Q Consensus 419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 498 (581)
.+.+.|+++++++....-++.. |.|...-..++..+|-.|++++|.+-++...+. .|+...-..+...+.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~------ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK------ 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH------
Confidence 4556778888888777777663 556667777778888888888888888777765 3333222111111111
Q ss_pred HHHHHHHHhcCCCCCC----C-HHhHHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 008022 499 AIQLLDRIRGGGEWNP----D-IISYTSLLWGIC--NSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p----~-~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 544 (581)
|...=..+.. ++-.| . ..-...++.++. ..|+.++|.++-.++.+
T Consensus 77 aE~~R~~vfa-G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 77 AAQARKDFAQ-GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHHHHHTT-SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111122222 22233 1 222344444443 45788888877777755
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.83 E-value=12 Score=33.01 Aligned_cols=114 Identities=16% Similarity=0.101 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH----HHHHhCCCCCChhhHHH
Q 008022 30 EGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIY----SNMKRDGMEPNVFTYNI 105 (581)
Q Consensus 30 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~ 105 (581)
...+..+..-|.+++++++|++++..- ...+.+.|+...+.++- +...+.++++|......
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345556666677888888888765433 22334445544443333 44444566777766666
Q ss_pred HHHHHHhcCChh-HHHHHHHHH----hhCC--CCCCcchHHHHHHHHHccCCHHHHHHHH
Q 008022 106 LLKALCKNNRVD-GAYKLLVEM----GNKG--CAPDAVSYTTIVSSICKLGQVEEARELA 158 (581)
Q Consensus 106 l~~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 158 (581)
++..+.....-+ .=.++.+++ .+.| ..-|+.....+...|.+.+++.+|...|
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 666665443311 112222222 2222 2235566666777777777777776654
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.42 E-value=2.4 Score=31.00 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022 84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS 143 (581)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (581)
..+-++.+...++-|++.+..+.+++|.+.+++..|.++|+-++.. ..+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3444444444455555555555555555555555555555555443 2223333444443
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.26 E-value=3.5 Score=38.41 Aligned_cols=97 Identities=11% Similarity=-0.133 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHH---
Q 008022 412 TYNELLDGLLRVNRVKEAFELVTEIEKCG--IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-GTKLDAITFNI--- 485 (581)
Q Consensus 412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~--- 485 (581)
+...+...|.+.|++++|.+.+.++.... ...-...+..++..+...+++..+...+.++... .-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56678888888999999999998887642 2223456677778888888888888888887644 11223222221
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHhc
Q 008022 486 -IIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 486 -l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
-+..+...++|.+|.+.|-.+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 22334456788888877776655
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.92 E-value=15 Score=32.07 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCCCHHhH
Q 008022 443 LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ---GKVNNAIQLLDRIRGGGEWNPDIISY 519 (581)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~p~~~~~ 519 (581)
-++.....+...|.+.|++.+|...|- .+...|...+..++.-+... |...++--++-+
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R-------------- 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR-------------- 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence 367778888888888999988887764 11112455555555444443 443332222211
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 008022 520 TSLLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
.+-.|...|+...|..+++...
T Consensus 194 --aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 --LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp --HHHHHHHTTBHHHHHHHHHHHH
T ss_pred --HHHHHHHhcCHHHHHHHHHHHH
Confidence 1223556788888888877664
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.57 E-value=7 Score=26.98 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 394 AMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIE 437 (581)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 437 (581)
..+-++.+...+..|++....+.+++|.+.+++.-|.++++.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444433
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.29 E-value=5.5 Score=27.33 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 008022 44 GLAEQALKMFYRIREFGLKPTVKIYNHIL--DALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYK 121 (581)
Q Consensus 44 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 121 (581)
...++|..+-+++...+ +.+ ...+| ..+...|+|++|..+.+... .||...|.++-.. +.|--+++..
T Consensus 21 H~HqEA~tIAdwL~~~~---~~E-~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---EEE-AVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---CHH-HHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---cHH-HHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHH
Confidence 34555555555554422 111 12222 33445566666655544333 4555555444332 4455555555
Q ss_pred HHHHHhhC
Q 008022 122 LLVEMGNK 129 (581)
Q Consensus 122 ~~~~~~~~ 129 (581)
-+.++...
T Consensus 91 rL~~la~s 98 (116)
T 2p58_C 91 RLNRLARS 98 (116)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 55455444
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.77 E-value=20 Score=31.57 Aligned_cols=82 Identities=13% Similarity=-0.004 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHH
Q 008022 442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS 521 (581)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 521 (581)
.-|+.....+...|.+.+++.+|...|- .+..++...+..++.-+...+...++--++ .-
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfi----------------aR 192 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYC----------------AR 192 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHH----------------HH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHH----------------HH
Confidence 3466777778888888888888887762 232334456655554444433322221111 12
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 008022 522 LLWGICNSGGMQEAFIYLQKML 543 (581)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~~~ 543 (581)
.+--|...++...|..+++...
T Consensus 193 aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 193 AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 2223556777777777665554
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.45 E-value=8.8 Score=26.36 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITF-NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 538 (581)
..++|..+-+-+...+ +..+. ..-+..+...|+|++|..+.+... .||...|..|. -.+.|..+++...
T Consensus 22 ~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---EEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALC--EYRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH--HHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHH
Confidence 3456666655555543 22111 112235566777777777665443 37777665553 3466666666666
Q ss_pred HHHHHHcC
Q 008022 539 LQKMLNEG 546 (581)
Q Consensus 539 ~~~~~~~~ 546 (581)
+.++..+|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 66665543
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.16 E-value=8.2 Score=26.45 Aligned_cols=77 Identities=16% Similarity=0.037 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 008022 460 MVVEAFQLLGKMLIEGTKLDAITF-NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIY 538 (581)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 538 (581)
..++|..+-+-+...+ +..+. ..-+..+...|+|++|..+.+... .||...|..| +-.+.|..+++...
T Consensus 21 ~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~AL--ce~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---QDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFAL--CEWHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHH--HHHhcccHHHHHHH
Confidence 3466666665555543 22211 112345667778887777665433 4777776555 34567777777777
Q ss_pred HHHHHHcC
Q 008022 539 LQKMLNEG 546 (581)
Q Consensus 539 ~~~~~~~~ 546 (581)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 76666554
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.61 E-value=5.1 Score=27.40 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=24.0
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008022 74 ALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNK 129 (581)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (581)
.+...|+|++|..+.+... .||...|.++-.. +.|--+++..-+.++...
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 3445555555555443332 4555554444322 455555555555455444
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.15 E-value=13 Score=27.35 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=21.9
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022 394 AMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEK 438 (581)
Q Consensus 394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 438 (581)
..+-++.+...+..|++......+.+|.+.+++.-|.++|+-++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555554443
No 270
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=82.06 E-value=16 Score=33.64 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=67.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh
Q 008022 21 MKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNV 100 (581)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 100 (581)
..+.|.+-....|..-...+...|++++|.++-....+ |.-.++.+.+.+-..-...|+..-.+.+|..+.+.| ..+.
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~ 429 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNK 429 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccch
Confidence 33456666777788888888888888888887766554 555677777665554455566777778888877776 5555
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH
Q 008022 101 FTYNILLKALCKNNRVDGAYKLLV 124 (581)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~a~~~~~ 124 (581)
..-.-+++....+|+.+-..+.+.
T Consensus 430 ~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 430 YESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhHHhHHHHhccHHHHHHHHHh
Confidence 444455666666666554444433
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.72 E-value=9.2 Score=35.56 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcchHHH
Q 008022 11 IDGVQYLLQQMKVEGVS--CSEGVFISVINSYRRVGLAEQALKMFYRIREF--GLKPTVKIYNHILDALLAENRFSMINP 86 (581)
Q Consensus 11 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 86 (581)
.++.........+.... .-..+...++..|.+.|+++.|.+.|.++... +...-.+.+-.+++.+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 33444444545553222 23457788999999999999999999998853 444567788889999999999999999
Q ss_pred HHHHHHhC-CCCCChhhHH----HHHHHHHhcCChhHHHHHHHHHhhC
Q 008022 87 IYSNMKRD-GMEPNVFTYN----ILLKALCKNNRVDGAYKLLVEMGNK 129 (581)
Q Consensus 87 ~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (581)
.++++... .-.++....+ .-+..+...+++..|-+.|-+....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 99887643 1122222221 1222344678999998888776543
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.80 E-value=48 Score=32.47 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=30.3
Q ss_pred HHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022 347 VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ 400 (581)
Q Consensus 347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 400 (581)
+..+...|....|...+..+... .+......+.......|.++.++.....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 34566778888887777776653 2233333445555666777766655543
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.65 E-value=26 Score=28.27 Aligned_cols=112 Identities=11% Similarity=0.019 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 008022 28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILL 107 (581)
Q Consensus 28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (581)
++.......+..+.+.|.. .+...+..+.. .++..+-...+.++...++.+.. ..+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 4666666666666666663 33333333333 24555555666666666654333 33333332 35555666666
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCH
Q 008022 108 KALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQV 151 (581)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (581)
.++...++.+.. ..+..+.. .++..+-...+.++...|..
T Consensus 103 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 103 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCH
Confidence 666666654333 33333332 23444444555555555543
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.64 E-value=31 Score=27.56 Aligned_cols=112 Identities=12% Similarity=0.050 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 008022 28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILL 107 (581)
Q Consensus 28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (581)
++.......+..+...|..+ +...+..+.. .++...-...+.++...++.+..-. +..+.. .++..+....+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEP-LIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHH-HHHHHc---CCCHHHHHHHH
Confidence 46666666666666666533 3333333332 2555555556666666665433333 333332 35566666666
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCH
Q 008022 108 KALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQV 151 (581)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (581)
.++...++.+.. ..+..+.. .++..+-...+.++...|..
T Consensus 98 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 98 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHTCG
T ss_pred HHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCCH
Confidence 666666664333 33333332 23444445555555555543
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.55 E-value=32 Score=27.59 Aligned_cols=83 Identities=8% Similarity=-0.060 Sum_probs=53.6
Q ss_pred HHHHHHHHc-----CCcccHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008022 431 ELVTEIEKC-----GIQLNIVTYNTILHGVCR--AGMVVEAFQLLGKMLIEGTKL-DAITFNIIIYAYCKQGKVNNAIQL 502 (581)
Q Consensus 431 ~~~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 502 (581)
.+++++.+. ....|+......+..... .++..++..+|..|...|+.. -...|...+..+...|++.+|.++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455555432 234455544444332222 455778888888888886654 345677788888888999999999
Q ss_pred HHHHhcCCCCCC
Q 008022 503 LDRIRGGGEWNP 514 (581)
Q Consensus 503 ~~~~~~~~~~~p 514 (581)
|+.-.+ .+-.|
T Consensus 138 y~~GI~-~~A~P 148 (202)
T 3esl_A 138 LELGAE-NNCRP 148 (202)
T ss_dssp HHHHHH-TTCBS
T ss_pred HHHHHH-cCCcc
Confidence 988887 33455
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.84 E-value=17 Score=29.09 Aligned_cols=60 Identities=10% Similarity=-0.020 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022 493 QGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT 553 (581)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 553 (581)
++...++.++|..+.. .++-- -...|...+..+...|++++|.++|+.-++.+-.|-...
T Consensus 92 ~~~~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 92 SNNFHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccccCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 4557899999999987 33433 566788888889999999999999999999888886543
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=67.03 E-value=48 Score=26.66 Aligned_cols=140 Identities=16% Similarity=0.042 Sum_probs=70.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 488 (581)
+...-...+.++...+.. ++...+..+.. .++...-...+.++.+.++.+ +...+..++. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 444444444445544442 22333333332 344444445555555555532 3334444443 445555556666
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcc
Q 008022 489 AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNL 565 (581)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 565 (581)
++...|+. ++...+..+.. .++...-...+.++...+. .++...+.++.+ .++..+-.....++...+
T Consensus 135 aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 135 ALGEIGDE-RAVEPLIKALK----DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC--
T ss_pred HHHHcCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcC
Confidence 66666654 34444444444 3555555566666666665 456666666655 245555555565555543
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.13 E-value=86 Score=28.54 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=27.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCC-----cccHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022 206 IISSLCDVGNVETSLGILGQMFVRGCNPN-----IHSFTSLLKGYLLGGRTHEASDLWNRMI 262 (581)
Q Consensus 206 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (581)
++..|...|++.+|..++..+.+.=-..| ...+..-+..|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45556666666666666555544211111 1112223444555556655555555443
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=59.80 E-value=55 Score=27.17 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=17.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 008022 99 NVFTYNILLKALCKNNRVDGAYKLLVEMG 127 (581)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 127 (581)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444455566666777777766665553
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.69 E-value=65 Score=24.43 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 008022 499 AIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICP 549 (581)
Q Consensus 499 A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 549 (581)
+.++|..+.. .++-- -+..|...+..+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYN-HGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHT-TTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444 22222 23344444444555555555555555555544444
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.90 E-value=1.3e+02 Score=28.49 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHH--HH-HHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022 27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREF-GLKPTVK--IY-NHILDALLAENRFSMINPIYSNMKRD 94 (581)
Q Consensus 27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (581)
.--..+++.+++.|...+.++.|..+..+..-- ...++.. .| -.+.+...-.+++.+|.+.+..+.+.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334667788888888888888888888877521 1012222 22 23446677788888888888887765
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.76 E-value=45 Score=27.68 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHH
Q 008022 72 LDALLAENRFSMINPIYSNMKRD--GMEP----NVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSI 145 (581)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (581)
+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45556666666666666655432 1111 112222333333333444444455555532 23444455556666
Q ss_pred HccCCHHHHHHHHHH
Q 008022 146 CKLGQVEEARELAMR 160 (581)
Q Consensus 146 ~~~g~~~~a~~~~~~ 160 (581)
.+.|+.++|.++|-+
T Consensus 102 ~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHH
Confidence 777777777766443
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.79 E-value=83 Score=24.23 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 464 AFQLLGKMLIEGTKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 464 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
+..+|..|...|+.. -+..|...+..+...|++.+|.++|+.-++
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666666665443 233455566666666777777777766666
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.87 E-value=51 Score=25.29 Aligned_cols=57 Identities=7% Similarity=-0.060 Sum_probs=40.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-HH-----HhcCCcchHHHHHHHHHh
Q 008022 37 INSYRRVGLAEQALKMFYRIREFGLKP--TVKIYNHILD-AL-----LAENRFSMINPIYSNMKR 93 (581)
Q Consensus 37 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~~-----~~~~~~~~a~~~~~~~~~ 93 (581)
...+...|++-+|-++|+.+-.....+ ....|..+|+ .. .+.|+...|..++.+...
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344556689999999998887655445 4556777777 32 357888888888888765
No 285
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=48.10 E-value=22 Score=26.54 Aligned_cols=61 Identities=10% Similarity=0.011 Sum_probs=40.5
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 22 KVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
.+.|.+ .......++..+...+.+-.|.++++.+.+.++..+..+....+..+...|-...
T Consensus 6 r~~g~r-~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 6 PPVKGR-ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp ----CH-HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCCc-cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 334444 2334455666666666777888888888887777788877777888888776543
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.95 E-value=67 Score=24.26 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022 35 SVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR 80 (581)
Q Consensus 35 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (581)
.++..+...+.+-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3344444444444455555555444443444444444444444433
No 287
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.39 E-value=70 Score=23.97 Aligned_cols=38 Identities=8% Similarity=-0.075 Sum_probs=15.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008022 42 RVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAEN 79 (581)
Q Consensus 42 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (581)
..+.+-.|.++++.+.+.++..+..+....+..+...|
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33334444444444444333334444333344444333
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.89 E-value=1.6e+02 Score=27.95 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC-CCCh---hhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008022 65 VKIYNHILDALLAENRFSMINPIYSNMKRDGM-EPNV---FTYNILLKALCKNNRVDGAYKLLVEMGNK 129 (581)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (581)
...++.+++.|...+.++.|..+.....--.. .++. ..+..+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45789999999999999999999998752100 0111 11223456677889999999999988765
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.43 E-value=98 Score=23.48 Aligned_cols=30 Identities=7% Similarity=-0.094 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQL 443 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 443 (581)
......+...|++.+|.++|+.-++.+-.|
T Consensus 105 e~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 105 IAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 333333444444444444444444443333
No 290
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.38 E-value=23 Score=26.03 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 33 FISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 33 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
...++..+...+.+-.|.++++.+.+.++..+..+....++.+...|-...
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 345566666677778888888888887777788877777888888776543
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.52 E-value=1.5e+02 Score=24.93 Aligned_cols=6 Identities=17% Similarity=0.030 Sum_probs=2.5
Q ss_pred hcCCHH
Q 008022 317 KAGNLL 322 (581)
Q Consensus 317 ~~~~~~ 322 (581)
..|+.+
T Consensus 228 ~~~~~~ 233 (285)
T 1wdy_A 228 EKKHLG 233 (285)
T ss_dssp HTTCHH
T ss_pred HcCCHH
Confidence 344443
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.49 E-value=2.1e+02 Score=30.00 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC------------------
Q 008022 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW------------------ 512 (581)
Q Consensus 451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------ 512 (581)
++..|...|.++-|.++..- .+.++..-..++.+|...|++++|.+.|+++....+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 44445555555544432211 1223333344566666666666666666655421100
Q ss_pred CC---CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022 513 NP---DIISYTSLLWGICNSGGMQEAFIYLQKMLNE 545 (581)
Q Consensus 513 ~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (581)
.+ ...-|..++..+-+.+-++-+.++.+.+++.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00 1124677777778888888888888888764
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.44 E-value=1.2e+02 Score=23.46 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCc
Q 008022 62 KPTVKIYNHILDALLAENRFSMINPIYSNMKRDGME-PNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDA 135 (581)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (581)
..|+.-...-+...-.. +.+..+|..|...|+- .-...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35555444444322222 4588889999888643 34456777788888899999999999999888766643
No 294
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.40 E-value=87 Score=24.02 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=41.6
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhcCChhHHHHHHHHHhh
Q 008022 75 LLAENRFSMINPIYSNMKRDGMEP--NVFTYNILLK-A-----LCKNNRVDGAYKLLVEMGN 128 (581)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 128 (581)
+...|++-+|-++++.+-.....+ ....|..+|+ + ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345599999999999998775445 4556777777 3 3468999999999998866
No 295
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.87 E-value=31 Score=25.61 Aligned_cols=63 Identities=10% Similarity=0.105 Sum_probs=46.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 20 QMKVEGVSCSEGVFISVINSYRRVG-LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
.+.+.|.+++ .....++..+...+ .+-.|.++++.+.+.++..+..+....+..+...|-...
T Consensus 8 ~l~~~g~r~T-~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVT-LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCC-HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 4556777644 44555666666666 778899999999988877888888888888888877543
No 296
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.54 E-value=30 Score=26.23 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=32.5
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLA 46 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 46 (581)
++.+...++.-.|.++++.+.+.++..+..+....+..+...|-.
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 455666666778888888887777777777777777777776643
No 297
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.43 E-value=1.4e+02 Score=24.18 Aligned_cols=19 Identities=16% Similarity=-0.008 Sum_probs=9.3
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 008022 39 SYRRVGLAEQALKMFYRIR 57 (581)
Q Consensus 39 ~~~~~g~~~~A~~~~~~~~ 57 (581)
.|.+.|.+++|.++|++..
T Consensus 123 VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHS
T ss_pred HHHHhcchHHHHHHHHHHh
Confidence 3444555555555555444
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.97 E-value=55 Score=24.55 Aligned_cols=43 Identities=7% Similarity=0.043 Sum_probs=20.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022 37 INSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR 80 (581)
Q Consensus 37 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (581)
+..+...+ +-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 25 l~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 25 LEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 33333333 44555555555554444444444444444444443
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.88 E-value=1.7e+02 Score=24.69 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=54.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008022 408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG-MVVEAFQLLGKMLIEGTKLDAITFNII 486 (581)
Q Consensus 408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 486 (581)
++...-...+.++...++.+ +...+..+.. .++...-...+.++...+ +...+...+..+.. .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 44444444555555555422 3333333333 233333333344444433 22444555545443 3455555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022 487 IYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN 544 (581)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (581)
+.++.+.|+.. +...+..+.. .|+. -...+.++...|. ..+...+.++.+
T Consensus 213 ~~aL~~~~~~~-~~~~L~~~l~----d~~v--r~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKR-VLSVLCDELK----KNTV--YDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGG-GHHHHHHHHT----SSSC--CHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHhCCHh-hHHHHHHHhc----CccH--HHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 66777777543 3333333433 1331 1233445555555 355555555554
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.80 E-value=62 Score=23.92 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=42.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 008022 56 IREFGLKPTVKIYNHILDALLAEN-RFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVD 117 (581)
Q Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 117 (581)
+.+.|...++.- ..++..+...+ ..-.|.++++.+.+.+...+..|-..-+..+...|-..
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 455677666553 45667777666 78899999999998876666666666677777777654
No 301
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.07 E-value=98 Score=27.67 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=10.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 008022 36 VINSYRRVGLAEQALKMFYRI 56 (581)
Q Consensus 36 l~~~~~~~g~~~~A~~~~~~~ 56 (581)
++.-|...|+.++|.+.++.+
T Consensus 60 ii~EYf~~~d~~Ea~~~l~eL 80 (358)
T 3eiq_C 60 IIQEYFEHGDTNEVAEMLRDL 80 (358)
T ss_dssp HHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455555555555555443
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.77 E-value=2.1e+02 Score=25.52 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCc
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM--VVEAFQLLGKMLIEGTKL 478 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 478 (581)
..++.-|...++.++|...++++...... .......+..++.+.++ .+...+++..+...++-+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 45566667777777777777776532111 12233344444444332 244556666666555443
No 303
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.52 E-value=51 Score=25.39 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=28.7
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCh
Q 008022 58 EFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD--GMEPNVFTYNILLKALCKNNRV 116 (581)
Q Consensus 58 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 116 (581)
+.|...+.. -..++..+...+..-.|.++++.+.+. +...+..|-..-+..+...|-.
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345544433 234455555555566666666666554 3333444444444555555543
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.50 E-value=32 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=32.1
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGL 45 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 45 (581)
++.+...++.-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 45566666677788888888777777777777777777777664
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.43 E-value=57 Score=27.31 Aligned_cols=18 Identities=11% Similarity=-0.056 Sum_probs=9.2
Q ss_pred HHHccCCHHHHHHHHHHH
Q 008022 244 GYLLGGRTHEASDLWNRM 261 (581)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~ 261 (581)
..+..|+.+-+.-++++-
T Consensus 231 ~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 231 MAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhC
Confidence 334456655555555543
No 306
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.94 E-value=34 Score=25.91 Aligned_cols=64 Identities=9% Similarity=0.157 Sum_probs=47.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 19 QQMKVEGVSCSEGVFISVINSYRRVG-LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
+.+.+.|..++ .....++..+...+ .+-.|.++++.+.+.++..+..+....+..+...|-...
T Consensus 6 ~~l~~~g~r~T-~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 6 QALKDAGLKVT-LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHTTCCCC-HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 34566777644 44455566666666 678899999999988877888888888999998887554
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.34 E-value=2e+02 Score=24.43 Aligned_cols=16 Identities=0% Similarity=-0.238 Sum_probs=8.1
Q ss_pred HHHHcCCHHHHHHHHH
Q 008022 39 SYRRVGLAEQALKMFY 54 (581)
Q Consensus 39 ~~~~~g~~~~A~~~~~ 54 (581)
..+..|+.+-+..+++
T Consensus 37 ~A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 37 YAIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3345666655544444
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=36.22 E-value=1.6e+02 Score=23.41 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=36.1
Q ss_pred HHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCC-----cchHHHHHHHHHhCC
Q 008022 33 FISVINSY---RRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLA-ENR-----FSMINPIYSNMKRDG 95 (581)
Q Consensus 33 ~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-----~~~a~~~~~~~~~~~ 95 (581)
+..+++++ .+..+++.|+-++.+|+..|-.| ..++..++...+. -|. ...|...++.....|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp-~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDP-LYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 33444444 46789999999999999877534 3355555544432 222 223444555555555
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.22 E-value=35 Score=25.68 Aligned_cols=44 Identities=9% Similarity=0.130 Sum_probs=33.0
Q ss_pred hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008022 2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLA 46 (581)
Q Consensus 2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 46 (581)
++.+.+.+ ...|.++++.+.+.++..+..+....+..+...|-.
T Consensus 25 l~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 25 LEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 45566666 678888888888887777888888888877777753
No 310
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.03 E-value=1.5e+02 Score=22.99 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
++.++..|.+.|+.++|+..+..--.
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 45555666667777777766665443
No 311
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=35.85 E-value=2e+02 Score=24.23 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=28.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC-CChHHHHHHHHHH
Q 008022 345 CMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC-GRVDWAMKLLDQM 401 (581)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~ 401 (581)
.++....+.+++++.....+.+...+...+..-.+.|-.+|-.. |....+++++..+
T Consensus 36 ~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 36 YQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 34445555666666666666666555444444444443333221 3333445555444
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.79 E-value=1.7e+02 Score=23.58 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=6.1
Q ss_pred HHcCCHHHHHHHH
Q 008022 41 RRVGLAEQALKMF 53 (581)
Q Consensus 41 ~~~g~~~~A~~~~ 53 (581)
+..|+.+....++
T Consensus 17 ~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 17 TQYGIYERCRELV 29 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCChHHHHHHH
Confidence 4455554444433
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.24 E-value=68 Score=24.22 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=44.2
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 008022 55 RIREFGLKPTVKIYNHILDALLAEN-RFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVD 117 (581)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 117 (581)
.+...|..++..- ..++..+...+ ..-.|.++++.+.+.+...+..|-..-+..+...|-..
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3556777666553 44566666666 78899999999998865666666666677787777654
No 314
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.80 E-value=34 Score=26.35 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=54.5
Q ss_pred hhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcch
Q 008022 11 IDGVQYLLQQM-KVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREF--GLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 11 ~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
.+.+++-+.+. .+.|.+. ..-...++..+...+.+-.|.++++.+.+. ++..+..+....+..+...|-..+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKY-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45566666554 4467775 445667778888888889999999999887 777788887778899999887654
No 315
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.57 E-value=1.7e+02 Score=23.05 Aligned_cols=81 Identities=10% Similarity=0.108 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHH
Q 008022 63 PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIV 142 (581)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 142 (581)
++...-...+..+.+.+.......+.+.+ . .++..+....+.++...++.+.. ..+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 55555555566666666544333333333 2 34555666666666666654333 33333332 23545555555
Q ss_pred HHHHccCCH
Q 008022 143 SSICKLGQV 151 (581)
Q Consensus 143 ~~~~~~g~~ 151 (581)
.++...|..
T Consensus 98 ~aL~~~~~~ 106 (201)
T 3ltj_A 98 VALGQIGDE 106 (201)
T ss_dssp HHHHHHCCG
T ss_pred HHHHHhCcH
Confidence 555555554
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.99 E-value=52 Score=21.48 Aligned_cols=63 Identities=10% Similarity=0.175 Sum_probs=43.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 008022 19 QQMKVEGVSCSEGVFISVINSYRRVG-LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS 82 (581)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (581)
+.+.+.|...+. -...++..+...+ .+-.+.++++.+.+.++..+..+....+..+...|-..
T Consensus 6 ~~l~~~g~~~t~-~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 345567776554 3355666665554 56678888888887776678888888888888877643
No 317
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=33.50 E-value=2.6e+02 Score=26.41 Aligned_cols=79 Identities=10% Similarity=-0.090 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHH
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGI 526 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 526 (581)
++..|.+.......++.|...|.++.... +.+...|+.++-.....|+.-+|.-.|-+.... ..|-+.+...+...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~--~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc--CCCChhHHHHHHHHH
Confidence 33445555555677899999999999875 557788999999888899988888887777652 357777777776655
Q ss_pred Hc
Q 008022 527 CN 528 (581)
Q Consensus 527 ~~ 528 (581)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.50 E-value=3.6e+02 Score=28.23 Aligned_cols=131 Identities=9% Similarity=0.026 Sum_probs=64.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccC
Q 008022 170 ALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGG 249 (581)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (581)
.++..+...+.++-+.++... .+.++..-..+..+|...|++++|...|++.. .|+..+......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG---------
T ss_pred HHHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc---------
Confidence 355666667777655543322 22233333456677778888888888887653 222211111000
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhc
Q 008022 250 RTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV----TTYSALIDGFAKA 318 (581)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 318 (581)
......++...... .....-|..++..+-+.+.++-+.++-+.....-.+.|. ..|..+.++.+..
T Consensus 880 -~~~~~~ll~~~e~~--~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 -LREFQEIAEKYHHQ--NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp -GHHHHHHHHHTTTC--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhhccCccccc--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 01111111111100 112235667777777777777777776666653222222 2455555555443
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.40 E-value=2.3e+02 Score=24.67 Aligned_cols=224 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022 271 VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVL 350 (581)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 350 (581)
.....++.-|...|+.++|...++++......|.......-...=.+...-+.+-.++..+.. ++-+.......+...+
T Consensus 4 k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 4 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Q ss_pred HccC----ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHh------------------hCCCCC
Q 008022 351 CQNN----MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMK------------------QYECLP 408 (581)
Q Consensus 351 ~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------~~~~~~ 408 (581)
.... +...|..++-.+...-+..+......+.....+. ....+.+.++... ..+..+
T Consensus 83 ~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~-~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~ 161 (307)
T 2zu6_B 83 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQS 161 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTC-CCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSC
T ss_pred HhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcc-cchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCC
Q ss_pred Chh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCcCHHHH
Q 008022 409 NIT---TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV--VEAFQLLGKMLIEGTKLDAITF 483 (581)
Q Consensus 409 ~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~ 483 (581)
... ....++.-|...|+.++|...++++... .--.......+..++.+.++. +....++..+.+.|+-+.....
T Consensus 162 ~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 162 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCC-cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_pred HHHHHHHHhcCCHH
Q 008022 484 NIIIYAYCKQGKVN 497 (581)
Q Consensus 484 ~~l~~~~~~~g~~~ 497 (581)
..+...+....|..
T Consensus 241 ~Gf~~vl~~l~Dl~ 254 (307)
T 2zu6_B 241 RGYERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHhh
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.33 E-value=2.1e+02 Score=23.43 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 008022 427 KEAFELVTEIEKCGIQLN-IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL 478 (581)
Q Consensus 427 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 478 (581)
+...++|..|...|+-.. ...|......+...|++.+|.++|+.-+..+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345556666665554333 3345555555566666666666666666554444
No 321
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.24 E-value=1.8e+02 Score=22.70 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=4.8
Q ss_pred ccCCHHHHHHHH
Q 008022 147 KLGQVEEARELA 158 (581)
Q Consensus 147 ~~g~~~~a~~~~ 158 (581)
..|+.+-+..++
T Consensus 81 ~~~~~~~~~~Ll 92 (201)
T 3hra_A 81 AQGRTEILAYML 92 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 334444433333
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.02 E-value=2.1e+02 Score=26.59 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 008022 423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQL 502 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 502 (581)
..+.+-|.++ +.+.|++--...|..-.+.+...|++++|.++....-. |+--+..|.+.+-..=...|+..--+.+
T Consensus 342 l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 4566655554 33455666666677777777888888888877655432 2333566665554444445666666677
Q ss_pred HHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHH
Q 008022 503 LDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYL 539 (581)
Q Consensus 503 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (581)
|..+.+.+.+ +..--..+++.-..+|+.+-....+
T Consensus 418 F~~Ll~~g~L--n~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 418 FGILLDQGQL--NKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHSCC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCcc--chHHhhHHhHHHHhccHHHHHHHHH
Confidence 7766664432 2222223444445555554444333
No 323
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.89 E-value=1.2e+02 Score=29.15 Aligned_cols=81 Identities=7% Similarity=0.092 Sum_probs=0.0
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022 4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM 83 (581)
Q Consensus 4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (581)
.++...+........++++.+-+--+..-...++..|.+.|-.+.|.+++..+-..-. .+...+ ..+..++++|+++.
T Consensus 490 ~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 490 ALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred hcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHHHHcCChhh
Q ss_pred HHH
Q 008022 84 INP 86 (581)
Q Consensus 84 a~~ 86 (581)
+..
T Consensus 568 Vk~ 570 (570)
T 3f3f_C 568 VKS 570 (570)
T ss_dssp ---
T ss_pred ccC
No 324
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.10 E-value=2.1e+02 Score=22.38 Aligned_cols=49 Identities=4% Similarity=-0.054 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008022 428 EAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK 477 (581)
Q Consensus 428 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 477 (581)
....++..+.+.|+-.|...-..++....+.|.+. ...+-.++...|++
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 44455555555555544444444444444333221 13334445555543
No 325
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.02 E-value=52 Score=24.49 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 008022 69 NHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVD 117 (581)
Q Consensus 69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 117 (581)
..++..+...++.-.|.++++.+.+.+...+..|-..-+..+...|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4556667677778889999999988765666666666677777777643
No 326
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.02 E-value=2e+02 Score=21.80 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCC--HHHHHHHHHHHhc
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA---ITFNIIIYAYCKQGK--VNNAIQLLDRIRG 508 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~~~~ 508 (581)
....++.-|...|+.++|.+.++++.. |.. .+...+..++-+.++ -+.+..++..+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~----p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 456678888888999999999988742 321 122333334433222 3345566666655
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.87 E-value=1.9e+02 Score=21.94 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIE 437 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~ 437 (581)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555566666666555553
No 328
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.55 E-value=3.8e+02 Score=24.91 Aligned_cols=48 Identities=8% Similarity=0.026 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHhhC--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008022 390 RVDWAMKLLDQMKQY--------ECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC 439 (581)
Q Consensus 390 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 439 (581)
..++...+++..... ++..+......++.. ..|+..++..+++.+...
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 455566666665442 222344445555444 468888888888877643
No 329
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.53 E-value=1.4e+02 Score=20.27 Aligned_cols=52 Identities=6% Similarity=-0.118 Sum_probs=29.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCcchHHHHHHHHHh
Q 008022 40 YRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALL-----AENRFSMINPIYSNMKR 93 (581)
Q Consensus 40 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~ 93 (581)
+...|++=+|-++++.+=.....+....|..+|+..+ +.|+. |..++.+...
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4455777777777777665443344445666654332 34555 6656655544
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.12 E-value=1.5e+02 Score=24.67 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=13.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 008022 277 IHGLCSNGSMDEAVSVSYQMEE 298 (581)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~ 298 (581)
+...+..|+.+-+..+++.-..
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCC
Confidence 3445667887777666665544
No 331
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=27.04 E-value=2.8e+02 Score=23.31 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=34.2
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHH
Q 008022 375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR-VNRVKEAFELVTEI 436 (581)
Q Consensus 375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 436 (581)
....-.++....+.+++++..+..+.+.+.+...+..-.|.|-.+|-. -|....+.+++..+
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 334444455556667777777777666666655565555555555532 23334444444444
No 332
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.01 E-value=2.7e+02 Score=23.13 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHccCChhHHHHHHH
Q 008022 318 AGNLLGASQIWNRMISNGCSPNVVA--YTCMVKVLCQNNMFHQAHSLIE 364 (581)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 364 (581)
.++.....++.+.+.+.|..++... -...+...+..|..+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 4444444455555555554443221 1122333445566655555544
No 333
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=26.62 E-value=2.8e+02 Score=23.13 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=26.8
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC-CChHHHHHHHHHH
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC-GRVDWAMKLLDQM 401 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~ 401 (581)
++...-+.+++++.....+.+...+...+..-.+.+--+|-.. |....+++++..+
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissi 66 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSI 66 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3444555566666666666665555444444444433333221 3333445554444
No 334
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.22 E-value=2.7e+02 Score=22.78 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022 463 EAFQLLGKMLIEGTKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRG 508 (581)
Q Consensus 463 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (581)
.+..+|..|...|+.. -...|...+..+...|++.+|.++|+.-++
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555554332 223344444555555555555555555444
No 335
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.17 E-value=1.2e+02 Score=19.98 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=9.0
Q ss_pred HccCCHHHHHHHHHHHH
Q 008022 527 CNSGGMQEAFIYLQKML 543 (581)
Q Consensus 527 ~~~g~~~~A~~~~~~~~ 543 (581)
-+.|++++|+.+|.+.+
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34555555555555443
No 336
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.71 E-value=1.2e+02 Score=18.47 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=7.4
Q ss_pred cCChhHHHHHHHHHHHC
Q 008022 178 EHKIEEAFWLLCEMVDR 194 (581)
Q Consensus 178 ~~~~~~a~~~~~~~~~~ 194 (581)
.|+.+.|+..+-.|...
T Consensus 36 ~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEE 52 (59)
T ss_dssp TTCHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHcCcCC
Confidence 34444444444444333
No 337
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.42 E-value=2.4e+02 Score=21.93 Aligned_cols=15 Identities=0% Similarity=-0.079 Sum_probs=9.1
Q ss_pred HHHcCCHHHHHHHHH
Q 008022 40 YRRVGLAEQALKMFY 54 (581)
Q Consensus 40 ~~~~g~~~~A~~~~~ 54 (581)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345677666666654
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.94 E-value=1e+02 Score=22.54 Aligned_cols=47 Identities=23% Similarity=0.160 Sum_probs=32.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCh
Q 008022 170 ALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNV 216 (581)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (581)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45555656666777888888887776666666666667777666643
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.69 E-value=5.2e+02 Score=25.57 Aligned_cols=341 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHH-------ccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 008022 205 TIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYL-------LGGRTHEASDLWNRMIREGFLPNVVAYSTLI 277 (581)
Q Consensus 205 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (581)
.+|-.|.+.|++++|.++.++....--..+ ..+...+..|+ ....-++....|++..+. .|+..-|...+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d-~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~--~~~~DpyK~Av 233 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVE-QSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKS--SLDGDPYRLAV 233 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC------CHHHHHHHC--------------------------------CHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhh-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCHHHHHH
Q ss_pred HHHHhcCChhhHHHHHHHHHhC-CCCCcHHhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCChhhHHH
Q 008022 278 HGLCSNGSMDEAVSVSYQMEEN-SCPPNVTTYSALIDGFAKAG-----------NLLGASQIWNRMISNGCSPNVVAYTC 345 (581)
Q Consensus 278 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (581)
-...-.-+.. -... .+..+..-|--+=-.+.+.+ .+.+....+.+.-+.-+.+ .
T Consensus 234 Y~Iig~cD~~--------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------l 299 (661)
T 2qx5_A 234 YKLIGRCDLS--------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------Y 299 (661)
T ss_dssp HHHHHTCCGG--------GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------C
T ss_pred HHHHhccccc--------ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------H
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR--- 422 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 422 (581)
...++.-.|+++.|..++-.. .+.+...+...+..|.-.+- -+.+...........+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhh
Q ss_pred cCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHCCCCcCH------HHHH
Q 008022 423 VNRVKEAFELVTEIEKCG-IQLNIVTYNTILHGVCRAGMVVEAF-----------QLLGKMLIEGTKLDA------ITFN 484 (581)
Q Consensus 423 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~------~~~~ 484 (581)
..++.+|.+.|--+-..+ ..-....+..+-......++++.-. -++++.... +..+. .+..
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~~i~~ 447 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLHTITE 447 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCC----------------HHHHHHHHHHHHHc---
Q 008022 485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGG----------------MQEAFIYLQKMLNE--- 545 (581)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------------~~~A~~~~~~~~~~--- 545 (581)
..+.-+...|++++|+.+|.-+-+ ...-....+.++.-....-. ...|.++.+.....
T Consensus 448 ~aA~~ae~~G~~~dAi~LY~La~~---~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~ 524 (661)
T 2qx5_A 448 QAARRADEDGRIYDSILLYQLAEE---YDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGI 524 (661)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchh
Q ss_pred --CCCC-CHHhHHHHHH-----HHHhccCCCChHHHHHHH
Q 008022 546 --GICP-NFATWNVLVR-----SLFSNLGHLGPVYILDDI 577 (581)
Q Consensus 546 --~~~~-~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~ 577 (581)
.+.+ +..++..|+. .++..|++++|++.++++
T Consensus 525 ~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 525 SRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 340
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.60 E-value=69 Score=25.44 Aligned_cols=21 Identities=5% Similarity=0.229 Sum_probs=11.3
Q ss_pred HHHHhcCCcchHHHHHHHHHh
Q 008022 73 DALLAENRFSMINPIYSNMKR 93 (581)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~ 93 (581)
..|.+.|.+++|.++|++.-.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 445555666666666655443
No 341
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.48 E-value=3.7e+02 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=13.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 008022 170 ALINGLCKEHKIEEAFWLLCEM 191 (581)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~ 191 (581)
.++.-|...|+.++|...++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 4555556666666666666554
No 342
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=24.47 E-value=3e+02 Score=22.75 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=27.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC-CChHHHHHHHHHH
Q 008022 345 CMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC-GRVDWAMKLLDQM 401 (581)
Q Consensus 345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~ 401 (581)
.++....+.+++++.....+.+...+...+..-.+.+-.+|-.. |....+++++..+
T Consensus 13 ~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissi 70 (236)
T 3iqu_A 13 QKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSI 70 (236)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 34445555666666666666665555444444444443333221 3333445555444
No 343
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.29 E-value=2.1e+02 Score=20.84 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 008022 415 ELLDGLLRVNRVKEAFELVTEIE 437 (581)
Q Consensus 415 ~l~~~~~~~~~~~~a~~~~~~~~ 437 (581)
.++.-|...|+.++|...++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444555555555555555543
No 344
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.17 E-value=3.3e+02 Score=23.04 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=8.3
Q ss_pred HHHHHhcCCcchHHHHHH
Q 008022 72 LDALLAENRFSMINPIYS 89 (581)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~ 89 (581)
+...+..|+.+.+..+++
T Consensus 35 L~~A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 333445565554444433
No 345
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.66 E-value=1.4e+02 Score=19.61 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=6.0
Q ss_pred ccCCHHHHHHHHHH
Q 008022 528 NSGGMQEAFIYLQK 541 (581)
Q Consensus 528 ~~g~~~~A~~~~~~ 541 (581)
+.|++++|+.+|.+
T Consensus 23 ~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 23 KEGKVEDAITYYKK 36 (83)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 34444444444443
No 346
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.62 E-value=1.8e+02 Score=19.92 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022 429 AFELVTEIEKCGIQLNIVTYNTILHGVCRAG 459 (581)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (581)
+.++.+++...|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4445555555566666665555555555444
No 347
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.61 E-value=1.4e+02 Score=18.62 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG 454 (581)
Q Consensus 414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (581)
+.++..+....-.+.++..+.++.+.| ..+...|..-++.
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~ 45 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRE 45 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 334444444444455555555555444 3344444333333
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.56 E-value=4.5e+02 Score=24.40 Aligned_cols=54 Identities=15% Similarity=0.013 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCC
Q 008022 422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM-----VVEAFQLLGKMLIEG 475 (581)
Q Consensus 422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 475 (581)
+.++.+.|+.++..|.+.|..|....-..+..+...-|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 346788888888888888766655554444444444442 233445555555555
No 349
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.05 E-value=3.2e+02 Score=22.56 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=17.8
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 008022 346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTF 381 (581)
Q Consensus 346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 381 (581)
++....+.+++++....++++...+...+..-.+.+
T Consensus 11 ~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLL 46 (234)
T 2br9_A 11 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLL 46 (234)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 344444555666666665555554434443333333
No 350
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.60 E-value=99 Score=18.83 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 008022 182 EEAFWLLCEMVDRGIDPNVITYSTIISSL 210 (581)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (581)
++|...|.+|.+..-.++..||...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555555443333455666555555
No 351
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.30 E-value=73 Score=19.39 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=16.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCH
Q 008022 493 QGKVNNAIQLLDRIRGGGEWNPDI 516 (581)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~~~~p~~ 516 (581)
.-|++.|...|..+...+.++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 447888888888777655565543
No 352
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.11 E-value=2.2e+02 Score=20.41 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=14.0
Q ss_pred HHHHhcCCcchHHHHHHHHHhC
Q 008022 73 DALLAENRFSMINPIYSNMKRD 94 (581)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~ 94 (581)
..+...++|..|..+...+...
T Consensus 69 ~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 69 VQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHC
Confidence 3445567777777777666653
No 353
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.80 E-value=2.4e+02 Score=20.55 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhc
Q 008022 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK--VNNAIQLLDRIRG 508 (581)
Q Consensus 447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~ 508 (581)
....++.-|...|+.++|.+.++++.... --...+...+..++-+.++ .+....++..+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~ 71 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 71 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 35667788888899999999888874210 0011122333333433322 3445566666654
No 354
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.18 E-value=3.2e+02 Score=21.86 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCC-----cchHHHHHHHHHhCCCC
Q 008022 33 FISVINSY---RRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLA-ENR-----FSMINPIYSNMKRDGME 97 (581)
Q Consensus 33 ~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-----~~~a~~~~~~~~~~~~~ 97 (581)
+..+++++ .+..+++.|+-++.+|+..| .| ..++..++...+. -|. ...|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp-~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DL-ASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CH-HHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CH-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33444444 46789999999999999988 33 3455555544433 232 22355555655666643
No 355
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.05 E-value=7.1e+02 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=14.2
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHH
Q 008022 199 NVITYSTIISSLCDVGNVETSLGILGQMFV 228 (581)
Q Consensus 199 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 228 (581)
....+..++......-.-++-.+-++...+
T Consensus 830 ~~~~~~~~i~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 830 GSFSFSNLIQGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp CCCCHHHHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 334555566555544444444444444443
No 356
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.69 E-value=3.3e+02 Score=21.87 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=6.1
Q ss_pred hcCChhHHHHHHHHH
Q 008022 112 KNNRVDGAYKLLVEM 126 (581)
Q Consensus 112 ~~~~~~~a~~~~~~~ 126 (581)
..|+.+....+++.+
T Consensus 18 ~~g~~~~v~~Ll~~~ 32 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLF 32 (241)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 344444444444433
No 357
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.57 E-value=3.8e+02 Score=22.44 Aligned_cols=113 Identities=7% Similarity=-0.078 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH-H---HHHHH-HHhCCCCCChhh
Q 008022 28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI-N---PIYSN-MKRDGMEPNVFT 102 (581)
Q Consensus 28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~---~~~~~-~~~~~~~~~~~~ 102 (581)
++.......+.++.+.|.. .+...+..+.. .++...-...+.++.+.|....+ . .++.. +.. .++..+
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~~v 107 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSACV 107 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCHHH
Confidence 4666666777777777763 44444444443 25555555666666666643222 2 23322 122 345555
Q ss_pred HHHHHHHHHhcCC-----hhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCC
Q 008022 103 YNILLKALCKNNR-----VDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQ 150 (581)
Q Consensus 103 ~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (581)
....+.++...+. ...+...+..+.. .++..+-...+.++...|+
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCC
Confidence 5556666555442 2334444443333 2355555555555555554
No 358
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.55 E-value=3.3e+02 Score=21.78 Aligned_cols=8 Identities=0% Similarity=-0.031 Sum_probs=3.5
Q ss_pred hcCChhHH
Q 008022 112 KNNRVDGA 119 (581)
Q Consensus 112 ~~~~~~~a 119 (581)
+.|+.+..
T Consensus 18 ~~g~~~~~ 25 (240)
T 3eu9_A 18 QYGIYERC 25 (240)
T ss_dssp HTTCHHHH
T ss_pred HcCChHHH
Confidence 44554333
No 359
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.51 E-value=1.8e+02 Score=19.68 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022 483 FNIIIYAYCKQGKVNNAIQLLDRIR 507 (581)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (581)
+......+.+.|.|++|++..+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455677777888888877666544
Done!