BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008024
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 168/529 (31%), Positives = 249/529 (47%), Gaps = 52/529 (9%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGE-----MKELSLLD 67
I L + + L+ LDIS N+L+G IS T L+ L++S N F G +K L L
Sbjct: 213 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 272
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
L+ N F+G + + C +L LDLS N+F G + + + L L +NNFSG++
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 128 -DGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG------------- 173
D LL L+VLD+S N SG +P + N S+ L L +S N+ G
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 174 -------------NVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALN 219
+P L+N L L +S N LSG I SSL +LS + L L N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 220 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 279
G IP EL L TL L N +G IP ++ +NL ++ L N L G IP + +L+
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 280 LAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDVLNGSKLNSPELDEEIEFGS------- 330
LA++ LS N FSG+IP + S W + ++ NG+ + + + + +
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT-IPAAMFKQSGKIAANFIAGKR 571
Query: 331 ---LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG------SNVNRV 381
+ N+ G L R+ R+ +Y G N +
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 382 TGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTG 441
LD+S N L+G IP +IG + + GSIP+ +L+ + LD+S NKL G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 442 QIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAW 490
+IP ++AL L+ ++S NNLSG P+ GQF TF + + NP LC +
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 740
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 221/478 (46%), Gaps = 55/478 (11%)
Query: 1 MNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLSHNN 55
++L RN + P+ +T L + + LK L++SSN L+ P +S L SLE LDLS N+
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANS 159
Query: 56 FEGE----------MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE-GQFFS 104
G EL L +S N SG + V+ C +LE LD+S+NNF G F
Sbjct: 160 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF- 215
Query: 105 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 164
+ + L+HL N SG + + T L++L+IS+N G IP L+ L
Sbjct: 216 -LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYL 271
Query: 165 SMSKNHLEGNVPVQLNN-LERLRILDISENRLSGPIASSLNLSSVEHLSLQK-NALNGLI 222
S+++N G +P L+ + L LD+S N G + S+ N +G +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 223 PGE-LFRSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHLQGPIPDQLCQLQK- 279
P + L + L L+L N FSG +P + N ++L L L N+ GPI LCQ K
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 280 -LAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSS- 337
L + L N F+G IPP +N S+L S L G++ ++ S
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNC-------------SELVSLHLSFNYLSGTIPSSLGSL 438
Query: 338 NTMFGMWRWLSALEKRAAID-------ERVEIEFAMKNRYEIYNG-SNVNRVTGLDLSCN 389
+ + + WL+ LE + E + ++F EI +G SN + + LS N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNN 497
Query: 390 QLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQL 447
+LTGEIP IG+L+ + G+IP + + + LD++ N G IP +
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 125/437 (28%), Positives = 199/437 (45%), Gaps = 62/437 (14%)
Query: 63 LSLLDLSRNYFSGGLSQSVVTGCF--------------------------SLELLDLSNN 96
L+ LDLSRN SG ++ G SLE+LDLS N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 97 NFEGQFFSEYM---NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 153
+ G ++ L+HL N SG + + +L+ LD+S+N S IP +
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-F 215
Query: 154 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 213
+G+ S+ L+ L +S N L G+ ++ L++L+IS N+ GPI L L S+++LSL
Sbjct: 216 LGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQYLSL 273
Query: 214 QKNALNGLIPGELFRSCKLVT-LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP- 271
+N G IP L +C +T L+L N F G +P S L L L N+ G +P
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 272 DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL 331
D L +++ L ++DLS N+FSG +P N+ + + D L+ + + P L +
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD--LSSNNFSGPILPNLCQ---- 387
Query: 332 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 391
NT+ ++ + ++ SN + + L LS N L
Sbjct: 388 ---NPKNTLQELYL------QNNGFTGKIPPTL-----------SNCSELVSLHLSFNYL 427
Query: 392 TGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 451
+G IPS +G L + G IP+ +K +E+L + +N LTG+IP L+
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 452 FLSIFNVSYNNLSGRTP 468
L+ ++S N L+G P
Sbjct: 488 NLNWISLSNNRLTGEIP 504
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 156/396 (39%), Gaps = 109/396 (27%)
Query: 6 NFIGS-PLITCLKNLTRLKILDISSNQLNGSLPSVISNLT-SLEYLDLSHNNFEGEM--- 60
NF G P+ T LK + LK+LD+S N+ +G LP ++NL+ SL LDLS NNF G +
Sbjct: 326 NFSGELPMDTLLK-MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 61 ------------------------------KELSLLDLSRNYFSGGLSQSVVTGCFS-LE 89
EL L LS NY SG + S+ G S L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLR 442
Query: 90 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH 149
L L N EG+ E M + L L + N+ +G+I GL + T+L + +SNN L+G
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 150 IPHWM-----------------GNFSSELEI------LSMSKNHLEGNVPV--------- 177
IP W+ GN +EL L ++ N G +P
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 178 -------------------------------------QLNNLERLRILDISENRLSGPIA 200
QLN L +I+ G +
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 201 SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 259
+ N S+ L + N L+G IP E+ L LNL N SG IP ++ + L L
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 260 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 295
L N L G IP + L L +DLS N SG IP
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 165/367 (44%), Gaps = 28/367 (7%)
Query: 116 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS-SELEILSMSKNHLE-- 172
+ N++ +G + G S SL LD+S N LSG + S S L+ L++S N L+
Sbjct: 80 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 173 GNVPVQLNNLERLRILDISENRLSGPIASSLNLSS----VEHLSLQKNALNGLIPGELFR 228
G V L L L +LD+S N +SG LS ++HL++ N ++G + ++ R
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 195
Query: 229 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 288
L L++ N FS IP + + S L+ L + GN L G + +L ++++S N
Sbjct: 196 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 289 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG----MW 344
+F G IPP L + +++ G P+ G + S N +G +
Sbjct: 255 QFVGPIPPLPLKSLQYLSLAENKFTGEI---PDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 345 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA 404
S LE A E M ++ + LDLS N+ +GE+P + L A
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRG------LKVLDLSFNEFSGELPESLTNLSA 365
Query: 405 -ILAXXXXXXXXXGSI-PESFSNLK-MIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 461
+L G I P N K ++ L + N TG+IPP L+ + L ++S+N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 462 NLSGRTP 468
LSG P
Sbjct: 426 YLSGTIP 432
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 134/323 (41%), Gaps = 54/323 (16%)
Query: 3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEM-- 60
L+ N + L N + L L +S N L+G++PS + +L+ L L L N EGE+
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 61 -----KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 115
K L L L N +G + S ++ C +L + LSNN G+ L L L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 116 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP------------------------ 151
NN+FSG I L SL LD++ N+ +G IP
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 152 --------HWMGNFSSELEILSMSKNHLE-------------GNVPVQLNNLERLRILDI 190
H GN I S N L G+ +N + LD+
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 191 SENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 249
S N LSG I + ++ + L+L N ++G IP E+ L L+L N GRIP
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 250 INEHSNLRFLLLGGNHLQGPIPD 272
++ + L + L N+L GPIP+
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPE 719
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEM 60
+NL N I + + +L L ILD+SSN+L+G +P +S LT L +DLS+NN G +
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 61 KEL 63
E+
Sbjct: 718 PEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 168/533 (31%), Positives = 251/533 (47%), Gaps = 52/533 (9%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGE-----MKELSLLD 67
I L + + L+ LDIS N+L+G IS T L+ L++S N F G +K L L
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
L+ N F+G + + C +L LDLS N+F G + + + L L +NNFSG++
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 128 -DGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG------------- 173
D LL L+VLD+S N SG +P + N S+ L L +S N+ G
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 174 -------------NVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALN 219
+P L+N L L +S N LSG I SSL +LS + L L N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 220 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 279
G IP EL L TL L N +G IP ++ +NL ++ L N L G IP + +L+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 280 LAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDVLNGSKLNSPELDEEIEFGS------- 330
LA++ LS N FSG+IP + S W + ++ NG+ + + + + +
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT-IPAAMFKQSGKIAANFIAGKR 574
Query: 331 ---LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG------SNVNRV 381
+ N+ G L R+ R+ +Y G N +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 382 TGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTG 441
LD+S N L+G IP +IG + + GSIP+ +L+ + LD+S NKL G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 442 QIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQ 494
+IP ++AL L+ ++S NNLSG P+ GQF TF + + NP LC + + +
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 224/480 (46%), Gaps = 59/480 (12%)
Query: 1 MNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVIS---NLTSLEYLDLSHNN 55
++L RN + P+ +T L + + LK L++SSN L+ P +S L SLE LDLS N+
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANS 162
Query: 56 FEGE----------MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE-GQFFS 104
G EL L +S N SG + V+ C +LE LD+S+NNF G F
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF- 218
Query: 105 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 164
+ + L+HL N SG + + T L++L+IS+N G IP L+ L
Sbjct: 219 -LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYL 274
Query: 165 SMSKNHLEGNVPVQLNN-LERLRILDISENRLSGPIASSLNLSSVEHLSLQK-NALNGLI 222
S+++N G +P L+ + L LD+S N G + S+ N +G +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 223 PGE-LFRSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHLQGPIPDQLCQLQK- 279
P + L + L L+L N FSG +P + N ++L L L N+ GPI LCQ K
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 280 -LAMMDLSRNKFSGSIPPCFAN---VLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNR 335
L + L N F+G IPP +N ++S + S + L+G+ +S GSL R
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHL-SFNYLSGTIPSS--------LGSLSKLR 445
Query: 336 SSNTMFGMWRWLSALEKRAAID-------ERVEIEFAMKNRYEIYNG-SNVNRVTGLDLS 387
+ WL+ LE + E + ++F EI +G SN + + LS
Sbjct: 446 D------LKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLS 498
Query: 388 CNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQL 447
N+LTGEIP IG+L+ + G+IP + + + LD++ N G IP +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 125/437 (28%), Positives = 199/437 (45%), Gaps = 62/437 (14%)
Query: 63 LSLLDLSRNYFSGGLSQSVVTGCF--------------------------SLELLDLSNN 96
L+ LDLSRN SG ++ G SLE+LDLS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 97 NFEGQFFSEYM---NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 153
+ G ++ L+HL N SG + + +L+ LD+S+N S IP +
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-F 218
Query: 154 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 213
+G+ S+ L+ L +S N L G+ ++ L++L+IS N+ GPI L L S+++LSL
Sbjct: 219 LGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQYLSL 276
Query: 214 QKNALNGLIPGELFRSCKLVT-LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP- 271
+N G IP L +C +T L+L N F G +P S L L L N+ G +P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 272 DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL 331
D L +++ L ++DLS N+FSG +P N+ + + D L+ + + P L +
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD--LSSNNFSGPILPNLCQ---- 390
Query: 332 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 391
NT+ ++ + ++ SN + + L LS N L
Sbjct: 391 ---NPKNTLQELYL------QNNGFTGKIPPTL-----------SNCSELVSLHLSFNYL 430
Query: 392 TGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 451
+G IPS +G L + G IP+ +K +E+L + +N LTG+IP L+
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 452 FLSIFNVSYNNLSGRTP 468
L+ ++S N L+G P
Sbjct: 491 NLNWISLSNNRLTGEIP 507
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 156/396 (39%), Gaps = 109/396 (27%)
Query: 6 NFIGS-PLITCLKNLTRLKILDISSNQLNGSLPSVISNLT-SLEYLDLSHNNFEGEM--- 60
NF G P+ T LK + LK+LD+S N+ +G LP ++NL+ SL LDLS NNF G +
Sbjct: 329 NFSGELPMDTLLK-MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 61 ------------------------------KELSLLDLSRNYFSGGLSQSVVTGCFS-LE 89
EL L LS NY SG + S+ G S L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLR 445
Query: 90 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH 149
L L N EG+ E M + L L + N+ +G+I GL + T+L + +SNN L+G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 150 IPHWM-----------------GNFSSELEI------LSMSKNHLEGNVPV--------- 177
IP W+ GN +EL L ++ N G +P
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 178 -------------------------------------QLNNLERLRILDISENRLSGPIA 200
QLN L +I+ G +
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 201 SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 259
+ N S+ L + N L+G IP E+ L LNL N SG IP ++ + L L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 260 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 295
L N L G IP + L L +DLS N SG IP
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 165/367 (44%), Gaps = 28/367 (7%)
Query: 116 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS-SELEILSMSKNHLE-- 172
+ N++ +G + G S SL LD+S N LSG + S S L+ L++S N L+
Sbjct: 83 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 173 GNVPVQLNNLERLRILDISENRLSGPIASSLNLSS----VEHLSLQKNALNGLIPGELFR 228
G V L L L +LD+S N +SG LS ++HL++ N ++G + ++ R
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 198
Query: 229 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 288
L L++ N FS IP + + S L+ L + GN L G + +L ++++S N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 289 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG----MW 344
+F G IPP L + +++ G P+ G + S N +G +
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEI---PDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 345 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA 404
S LE A E M ++ + LDLS N+ +GE+P + L A
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRG------LKVLDLSFNEFSGELPESLTNLSA 368
Query: 405 -ILAXXXXXXXXXGSI-PESFSNLK-MIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 461
+L G I P N K ++ L + N TG+IPP L+ + L ++S+N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 462 NLSGRTP 468
LSG P
Sbjct: 429 YLSGTIP 435
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 134/323 (41%), Gaps = 54/323 (16%)
Query: 3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEM-- 60
L+ N + L N + L L +S N L+G++PS + +L+ L L L N EGE+
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 61 -----KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 115
K L L L N +G + S ++ C +L + LSNN G+ L L L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 116 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP------------------------ 151
NN+FSG I L SL LD++ N+ +G IP
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 152 --------HWMGNFSSELEILSMSKNHLE-------------GNVPVQLNNLERLRILDI 190
H GN I S N L G+ +N + LD+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 191 SENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 249
S N LSG I + ++ + L+L N ++G IP E+ L L+L N GRIP
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 250 INEHSNLRFLLLGGNHLQGPIPD 272
++ + L + L N+L GPIP+
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPE 722
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEM 60
+NL N I + + +L L ILD+SSN+L+G +P +S LT L +DLS+NN G +
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 61 KEL 63
E+
Sbjct: 721 PEM 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 130/319 (40%), Gaps = 84/319 (26%)
Query: 175 VPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 232
+P L NL L L I N L GPI ++ L+ + +L + ++G IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 233 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL-AMMDLSRNKFS 291
VTL+ N SG +P I+ NL + GN + G IPD KL M +SRN+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 292 GSIPPCFANV-LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSAL 350
G IPP FAN+ L++ S ++L G D + FGS N + + L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEG--------DASVLFGSDKNTQKIH-----------L 228
Query: 351 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXX 410
K + + ++ + N+N GLDL N++
Sbjct: 229 AKNSLAFDLGKVGLS----------KNLN---GLDLRNNRI------------------- 256
Query: 411 XXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 470
G++P+ + LK + SL++S+N L G+I P
Sbjct: 257 -----YGTLPQGLTQLKFLHSLNVSFNNLCGEI------------------------PQG 287
Query: 471 GQFATFDESSYRGNPSLCA 489
G FD S+Y N LC
Sbjct: 288 GNLQRFDVSAYANNKCLCG 306
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 31/256 (12%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISS-NQLNGSLPSVISNLTSLEYLDLSHNNFEGE 59
+NL + + P+ + L NL L L I N L G +P I+ LT L YL ++H N G
Sbjct: 60 LNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 60 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 119
+ + LSQ +L LD S N G +L L + F+
Sbjct: 117 IPDF-------------LSQ-----IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 120 NNFSGKIKDGLLSSTSL-QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 178
N SG I D S + L + IS N L+G IP N L + +S+N LEG+ V
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVL 216
Query: 179 LNNLERLRILDISENRLS---GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 235
+ + + + +++N L+ G + S NL+ ++ L+ N + G +P L + L +L
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD---LRNNRIYGTLPQGLTQLKFLHSL 273
Query: 236 NLRDNTFSGRIPHQIN 251
N+ N G IP N
Sbjct: 274 NVSFNNLCGEIPQGGN 289
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 102/230 (44%), Gaps = 32/230 (13%)
Query: 96 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------- 148
NN G LT+L +LY + N SG I D L +L LD S N LSG
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 149 -----------------HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 191
IP G+FS +++S+N L G +P NL L +D+S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 192 ENRLSGPIASSLNLS--SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 249
N L G AS L S + + + L KN+L G++ S L L+LR+N G +P
Sbjct: 206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 250 INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK-FSGS-IPPC 297
+ + L L + N+L G IP Q LQ+ + + NK GS +P C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 25 LDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEM-------KELSLLDLSRNYFSGGL 77
+ IS N+L G +P +NL +L ++DLS N EG+ K + L++N + L
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 78 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ 137
+ ++ +L LDL NN G L L L NN G+I G +LQ
Sbjct: 238 GKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQ 291
Query: 138 VLDIS 142
D+S
Sbjct: 292 RFDVS 296
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 10/176 (5%)
Query: 87 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNN 144
S L+ + N F F L RL+ L + N K L++ +SL+ LD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 145 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 204
L+ H ++ + +L++S N L G+V L ++++LD+ NR+ +
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTH 471
Query: 205 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP------HQINEHS 254
L +++ L++ N L + G R L + L DN + P IN+HS
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 527
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 159 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL---NLSSVEHLSLQK 215
S L+ ++N +V + L+RL+ L + N L +L N+SS+E L +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 216 NALNGLIPGELFRSCK----LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 271
N+LN R+C ++ LNL N +G + + ++ L L N + IP
Sbjct: 413 NSLNS---HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IP 466
Query: 272 DQLCQLQKLAMMDLSRNKFSGSIP 295
+ LQ L ++++ N+ S+P
Sbjct: 467 KDVTHLQALQELNVASNQLK-SVP 489
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-- 58
++L +N I + + L+ L++L +S N++ V LEYLD+SHN +
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 59 --EMKELSLLDLSRNYF 73
M L LDLS N F
Sbjct: 117 CCPMASLRHLDLSFNDF 133
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 133/286 (46%), Gaps = 30/286 (10%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLD 67
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + L+ L+
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
LS N S S ++G SL+ L S+N NLT L L +N K+
Sbjct: 136 LSSNTIS---DISALSGLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSN----KVS 186
Query: 128 D--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
D L T+L+ L +NN +S P +G + L+ LS++ N L+ L +L L
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKD--IGTLASLTNL 241
Query: 186 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 245
LD++ N++S +A L+ + L L N ++ + P L L L L +N
Sbjct: 242 TDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
Query: 246 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291
P I+ NL +L L N++ P + L KL + S NK S
Sbjct: 299 SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 340
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 144/328 (43%), Gaps = 43/328 (13%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE-----GEMKELSLLD 67
I LKNLT L L++SSN + S S +S LTSL+ L S N + L LD
Sbjct: 122 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLD 179
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
+S N S SV+ +LE L +NN + LT L L N ++K
Sbjct: 180 ISSNKVS---DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGN----QLK 230
Query: 128 D-GLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
D G L+S T+L LD++NN +S P + ++L L + N + P L L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTAL 285
Query: 186 RILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243
L+++EN+L PI+ NL ++ +L+L N ++ + P + KL L +N S
Sbjct: 286 TNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 340
Query: 244 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN---------KFSGSI 294
+ +N+ +L G N + P L L ++ + L+ K + SI
Sbjct: 341 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 396
Query: 295 PPCFANVLSWRVGSDDVLNGSKLNSPEL 322
P NV + + +G P++
Sbjct: 397 PNTVKNVTGALIAPATISDGGSYTEPDI 424
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLS 78
L LK L +SN+ + V +L SLE+LDLS N F G S
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLS---------------FKGCCS 390
Query: 79 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQ 137
QS G SL+ LDLS N S ++ L +L HL F+++N + LS +L
Sbjct: 391 QSDF-GTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448
Query: 138 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN-VPVQLNNLERLRILDISENRLS 196
LDIS+ SS LE+L M+ N + N +P L L LD+S+ +L
Sbjct: 449 YLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507
Query: 197 GPIASSLN-LSSVEHLSLQKN 216
++ N LSS++ L++ N
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHN 528
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF------ 56
+ NF+ + T L+NLT LD+S QL P+ ++L+SL+ L++SHNNF
Sbjct: 481 FQENFLPD-IFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 536
Query: 57 -EGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTR 111
+ L +LD S N+ Q + SL L+L+ N+F E Q F +++ R
Sbjct: 537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 596
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDIS-SNQLNGSLPSVISNLTSLEYLDLSHNN---- 55
+ + NF+G L +L+ LD SN S SV +L +L YLD+SH +
Sbjct: 410 ITMSSNFLG---------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 56 ----FEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTR 111
F G + L +L ++ N F + T +L LDLS E + + +L+
Sbjct: 461 FNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519
Query: 112 LRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 169
L+ L +NNF SLQVLD S N + + +F S L L++++N
Sbjct: 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 161 LEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 218
LE L +S+N L +G L+ LD+S N + ++ L L +EHL Q + L
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 219 NGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQ 276
+ +F S + L+ L++ N S+L L + GN Q +PD +
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 277 LQKLAMMDLSRNKFSGSIPPCFANVLSWRV 306
L+ L +DLS+ + P F ++ S +V
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 131/276 (47%), Gaps = 29/276 (10%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLD 67
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + L+ L+
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
LS N S S ++G SL+ L+ S+N NLT L L +N K+
Sbjct: 136 LSSNTIS---DISALSGLTSLQQLNFSSNQVTD--LKPLANLTTLERLDISSN----KVS 186
Query: 128 D--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
D L T+L+ L +NN +S P +G + L+ LS++ N L+ L +L L
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKD--IGTLASLTNL 241
Query: 186 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 245
LD++ N++S +A L+ + L L N ++ + P L L L L +N
Sbjct: 242 TDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
Query: 246 IPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKL 280
P I+ NL +L L N++ P L +LQ+L
Sbjct: 299 SP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 145/328 (44%), Gaps = 43/328 (13%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE-----GEMKELSLLD 67
I LKNLT L L++SSN + S S +S LTSL+ L+ S N + L LD
Sbjct: 122 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLD 179
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
+S N S SV+ +LE L +NN + LT L L N ++K
Sbjct: 180 ISSNKVS---DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGN----QLK 230
Query: 128 D-GLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
D G L+S T+L LD++NN +S P + ++L L + N + P L L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTAL 285
Query: 186 RILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243
L+++EN+L PI+ NL ++ +L+L N ++ + P + KL L +N S
Sbjct: 286 TNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340
Query: 244 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN---------KFSGSI 294
+ +N+ +L G N + P L L ++ + L+ K + SI
Sbjct: 341 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 396
Query: 295 PPCFANVLSWRVGSDDVLNGSKLNSPEL 322
P NV + + +G P++
Sbjct: 397 PNTVKNVTGALIAPATISDGGSYTEPDI 424
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 130/276 (47%), Gaps = 29/276 (10%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLD 67
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + L+ L+
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
LS N S S ++G SL+ L S+N NLT L L +N K+
Sbjct: 136 LSSNTIS---DISALSGLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSN----KVS 186
Query: 128 D--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
D L T+L+ L +NN +S P +G + L+ LS++ N L+ L +L L
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKD--IGTLASLTNL 241
Query: 186 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 245
LD++ N++S +A L+ + L L N ++ + P L L L L +N
Sbjct: 242 TDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
Query: 246 IPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKL 280
P I+ NL +L L N++ P L +LQ+L
Sbjct: 299 SP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 144/328 (43%), Gaps = 43/328 (13%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE-----GEMKELSLLD 67
I LKNLT L L++SSN + S S +S LTSL+ L S N + L LD
Sbjct: 122 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLD 179
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
+S N S SV+ +LE L +NN + LT L L N ++K
Sbjct: 180 ISSNKVS---DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGN----QLK 230
Query: 128 D-GLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
D G L+S T+L LD++NN +S P + ++L L + N + P L L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTAL 285
Query: 186 RILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243
L+++EN+L PI+ NL ++ +L+L N ++ + P + KL L +N S
Sbjct: 286 TNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340
Query: 244 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN---------KFSGSI 294
+ +N+ +L G N + P L L ++ + L+ K + SI
Sbjct: 341 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 396
Query: 295 PPCFANVLSWRVGSDDVLNGSKLNSPEL 322
P NV + + +G P++
Sbjct: 397 PNTVKNVTGALIAPATISDGGSYTEPDI 424
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 24/243 (9%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-- 58
+NL+++ + + TR++ LD+++ LNG LPS I + SL+ L L+ N+F+
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLC 316
Query: 59 EMKELSLLDLSRNYFSGGLSQ-SVVTGCF----SLELLDLSNNNFEGQFFSEYMNLTRLR 113
++ S L Y G + + + T C +L+ LDLS+++ E + L LR
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCN-LQLKNLR 375
Query: 114 HLYFENNNFS---GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 170
HL + N +++ G L++LD++ L PH L +L++S
Sbjct: 376 HLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCL 435
Query: 171 LEGNVPVQLNNLERLRILDISENRL-SGPIASS-----------LNLSSVEHLSLQKNAL 218
L+ + L L+ LR L++ N G I+ + L LSS LS+ + A
Sbjct: 436 LDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAF 495
Query: 219 NGL 221
+GL
Sbjct: 496 HGL 498
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 15 CLKNLTRLKILDISSNQLNGSLPS--VISNLTSLEYLDLSHNNFEG-------EMKELSL 65
CL+ L L+ LD+S + + S + NL L+YL+LS+N G E +L L
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 66 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 125
LD++ + S L +L+LS+ + L LRHL + N+F
Sbjct: 404 LDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF--- 460
Query: 126 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
+DG +S T+L + LEIL +S +L + L +
Sbjct: 461 -QDGSISKTNLLQM------------------VGSLEILILSSCNLLSIDQQAFHGLRNV 501
Query: 186 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 227
LD+S N L+G +L+ +L++ N + +IP L
Sbjct: 502 NHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIR-IIPPHLL 542
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE-GEMKELSLLDLSRNYFS 74
+NL L++L++S L+ S +++ L L +L+L N+F+ G + + +LL +
Sbjct: 420 FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQM-----V 474
Query: 75 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST 134
G L +++ C LL + F G L + HL +N+ +G D L
Sbjct: 475 GSLEILILSSC---NLLSIDQQAFHG--------LRNVNHLDLSHNSLTGDSMDALSHLK 523
Query: 135 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 172
L L++++N + PH + S + I+++S N L+
Sbjct: 524 GL-YLNMASNNIRIIPPHLLPALSQQ-SIINLSHNPLD 559
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 133/288 (46%), Gaps = 35/288 (12%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLD 67
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + L+ L+
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF--FSEYMNLTRLRHLYFENNNFSGK 125
LS N S S ++G SL+ L NF Q NLT L L +N K
Sbjct: 136 LSSNTIS---DISALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSN----K 183
Query: 126 IKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 183
+ D L T+L+ L +NN +S P +G + L+ LS++ N L+ L +L
Sbjct: 184 VSDISVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKD--IGTLASLT 238
Query: 184 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243
L LD++ N++S +A L+ + L L N ++ + P L L L L +N
Sbjct: 239 NLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
Query: 244 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291
P I+ NL +L L N++ P + L KL + S NK S
Sbjct: 296 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 339
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 145/327 (44%), Gaps = 42/327 (12%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GEMKELSLLDL 68
I LKNLT L L++SSN + S S +S LTSL+ L+ + + + L LD+
Sbjct: 122 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDI 179
Query: 69 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD 128
S N S SV+ +LE L +NN + LT L L N ++KD
Sbjct: 180 SSNKVS---DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGN----QLKD 230
Query: 129 -GLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 186
G L+S T+L LD++NN +S P + ++L L + N + P L L L
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTALT 285
Query: 187 ILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 244
L+++EN+L PI+ NL ++ +L+L N ++ + P + KL L +N S
Sbjct: 286 NLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD 340
Query: 245 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN---------KFSGSIP 295
+ +N+ +L G N + P L L ++ + L+ K + SIP
Sbjct: 341 V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 396
Query: 296 PCFANVLSWRVGSDDVLNGSKLNSPEL 322
NV + + +G P++
Sbjct: 397 NTVKNVTGALIAPATISDGGSYTEPDI 423
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 133/314 (42%), Gaps = 49/314 (15%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN------ 54
++L F+ S + L LK+L+++ N++N L +L+ L+LS+N
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 55 --NFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL 112
NF G + +++ +DL +N+ + Q+ L+ LDL +N F + +
Sbjct: 331 SSNFYG-LPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTLDLRDNALTTIHF-----IPSI 383
Query: 113 RHLYFENNNFSGKIKDGL------LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 166
++ N K L LS L+ LDI +L +PH L+IL +
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL--RVPH--------LQILIL 433
Query: 167 SKNHLEG----NVPVQLNNLERLRILDISENRLSGPIASSL------NLSSVEHLSLQKN 216
++N P + +LE+L + EN L + L LS ++ L L N
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLF---LGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 217 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 276
LN L PG L L+L N + + + +NL L + N L P PD
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISRNQLLAPNPDVFV- 547
Query: 277 LQKLAMMDLSRNKF 290
L+++D++ NKF
Sbjct: 548 --SLSVLDITHNKF 559
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 116/303 (38%), Gaps = 47/303 (15%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLS---------HNNFEGEMKELSLL 66
+NL L+ILD+ S+++ P L L L L + + +K L+ L
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-----------FEGQ---FFSEYMNLTRL 112
DLS+N SL+ +D S+N +G+ FFS N
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN---- 184
Query: 113 RHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS---SELEILSMSKN 169
LY + GK + + L++LD+S N G GNFS S+ + S+
Sbjct: 185 -SLYSRVSVDWGKCMNP-FRNMVLEILDVSGN---GWTVDITGNFSNAISKSQAFSLILA 239
Query: 170 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRS 229
H +N++ D +N +G L SSV HL L + L +F +
Sbjct: 240 HHIMGAGFGFHNIK-----DPDQNTFAG-----LARSSVRHLDLSHGFVFSL-NSRVFET 288
Query: 230 CK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 288
K L LNL N + NL+ L L N L L K+A +DL +N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 289 KFS 291
+
Sbjct: 349 HIA 351
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLS 78
L LK L +SN+ + V +L SLE+LDLS N F G S
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLS---------------FKGCCS 366
Query: 79 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQ 137
QS G SL+ LDLS N S ++ L +L HL F+++N + LS +L
Sbjct: 367 QSDF-GTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 138 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN-VPVQLNNLERLRILDISENRLS 196
LDIS+ SS LE+L M+ N + N +P L L LD+S+ +L
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 197 GPIASSLN-LSSVEHLSLQKN 216
++ N LSS++ L++ N
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHN 504
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQ 79
T LK LD+S N + ++ S L LE+LD H+N + +M E S+ RN +S
Sbjct: 373 TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISH 430
Query: 80 S--------VVTGCFSLELLDLSNNNFEGQF----FSEYMNLT----------------- 110
+ + G SLE+L ++ N+F+ F F+E NLT
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 111 ----RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 166
L+ L +NNF SLQVLD S N + + +F S L L++
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550
Query: 167 SKN 169
++N
Sbjct: 551 TQN 553
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF------ 56
+ NF+ + T L+NLT LD+S QL P+ ++L+SL+ L++SHNNF
Sbjct: 457 FQENFLPD-IFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 57 -EGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 98
+ L +LD S N+ Q + SL L+L+ N+F
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 161 LEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 218
LE L +S+N L +G L+ LD+S N + ++ L L +EHL Q + L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 219 NGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQ 276
+ +F S + L+ L++ N S+L L + GN Q +PD +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 277 LQKLAMMDLSRNKFSGSIPPCFANVLSWRV 306
L+ L +DLS+ + P F ++ S +V
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 132/286 (46%), Gaps = 31/286 (10%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLD 67
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + L+ L+
Sbjct: 82 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 139
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
LS N S S ++G SL+ L N + NLT L L +N K+
Sbjct: 140 LSSNTIS---DISALSGLTSLQQLSFGN---QVTDLKPLANLTTLERLDISSN----KVS 189
Query: 128 D--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
D L T+L+ L +NN +S P +G + L+ LS++ N L+ L +L L
Sbjct: 190 DISVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKD--IGTLASLTNL 244
Query: 186 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 245
LD++ N++S +A L+ + L L N ++ + P L L L L +N
Sbjct: 245 TDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 301
Query: 246 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291
P I+ NL +L L N++ P + L KL + + NK S
Sbjct: 302 SP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS 343
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 144/327 (44%), Gaps = 42/327 (12%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GEMKELSLLDL 68
I LKNLT L L++SSN + S S +S LTSL+ L + + + L LD+
Sbjct: 126 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 183
Query: 69 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD 128
S N S SV+ +LE L +NN + LT L L N ++KD
Sbjct: 184 SSNKVS---DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGN----QLKD 234
Query: 129 -GLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 186
G L+S T+L LD++NN +S P + ++L L + N + P L L L
Sbjct: 235 IGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTALT 289
Query: 187 ILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 244
L+++EN+L PI+ NL ++ +L+L N ++ + P + KL L +N S
Sbjct: 290 NLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 344
Query: 245 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN---------KFSGSIP 295
+ +N+ +L G N + P L L ++ + L+ K + SIP
Sbjct: 345 V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 400
Query: 296 PCFANVLSWRVGSDDVLNGSKLNSPEL 322
NV + + +G P++
Sbjct: 401 NTVKNVTGALIAPATISDGGSYTEPDI 427
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 130/278 (46%), Gaps = 34/278 (12%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLD 67
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + L+ L+
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF--FSEYMNLTRLRHLYFENNNFSGK 125
LS N S S ++G SL+ L NF Q NLT L L +N K
Sbjct: 136 LSSNTIS---DISALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSN----K 183
Query: 126 IKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 183
+ D L T+L+ L +NN +S P +G + L+ LS++ N L+ L +L
Sbjct: 184 VSDISVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKD--IGTLASLT 238
Query: 184 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243
L LD++ N++S +A L+ + L L N ++ + P L L L L +N
Sbjct: 239 NLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
Query: 244 GRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKL 280
P I+ NL +L L N++ P L +LQ+L
Sbjct: 296 DISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 145/327 (44%), Gaps = 42/327 (12%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GEMKELSLLDL 68
I LKNLT L L++SSN + S S +S LTSL+ L+ + + + L LD+
Sbjct: 122 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDI 179
Query: 69 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD 128
S N S SV+ +LE L +NN + LT L L N ++KD
Sbjct: 180 SSNKVS---DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGN----QLKD 230
Query: 129 -GLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 186
G L+S T+L LD++NN +S P + ++L L + N + P L L L
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTALT 285
Query: 187 ILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 244
L+++EN+L PI+ NL ++ +L+L N ++ + P + KL L +N S
Sbjct: 286 NLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 340
Query: 245 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN---------KFSGSIP 295
+ +N+ +L G N + P L L ++ + L+ K + SIP
Sbjct: 341 V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 396
Query: 296 PCFANVLSWRVGSDDVLNGSKLNSPEL 322
NV + + +G P++
Sbjct: 397 NTVKNVTGALIAPATISDGGSYTEPDI 423
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 129/276 (46%), Gaps = 30/276 (10%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLD 67
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + L+ L+
Sbjct: 83 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 127
LS N S S ++G SL+ L N + NLT L L +N K+
Sbjct: 141 LSSNTIS---DISALSGLTSLQQLSFGN---QVTDLKPLANLTTLERLDISSN----KVS 190
Query: 128 D--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185
D L T+L+ L +NN +S P +G + L+ LS++ N L+ L +L L
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKD--IGTLASLTNL 245
Query: 186 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 245
LD++ N++S +A L+ + L L N ++ + P L L L L +N
Sbjct: 246 TDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302
Query: 246 IPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKL 280
P I+ NL +L L N++ P L +LQ+L
Sbjct: 303 SP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 144/327 (44%), Gaps = 42/327 (12%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GEMKELSLLDL 68
I LKNLT L L++SSN + S S +S LTSL+ L + + + L LD+
Sbjct: 127 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184
Query: 69 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD 128
S N S SV+ +LE L +NN + LT L L N ++KD
Sbjct: 185 SSNKVS---DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGN----QLKD 235
Query: 129 -GLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 186
G L+S T+L LD++NN +S P + ++L L + N + P L L L
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAGLTALT 290
Query: 187 ILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 244
L+++EN+L PI+ NL ++ +L+L N ++ + P + KL L +N S
Sbjct: 291 NLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345
Query: 245 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN---------KFSGSIP 295
+ +N+ +L G N + P L L ++ + L+ K + SIP
Sbjct: 346 V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401
Query: 296 PCFANVLSWRVGSDDVLNGSKLNSPEL 322
NV + + +G P++
Sbjct: 402 NTVKNVTGALIAPATISDGGSYTEPDI 428
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 13/180 (7%)
Query: 23 KILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFE----GEMKELSLLDLSRNYFSGGL 77
K LD+ SN+L+ SLPS LT L L L+ N + G KEL +L + +
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK--NLETLWVTDNK 96
Query: 78 SQSVVTGCFS----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS 133
Q++ G F L L L N + + +LT+L +L N K
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 134 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 193
TSL+ L + NN L +P + +EL+ L + N L+ ++LE+L++L + EN
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 139 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG- 197
+D S+ L+ IP N ++ + L + N L + L +LR+L +++N+L
Sbjct: 21 VDCSSKKLTA-IPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 198 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 257
P L ++E L + N L L G + L L L N P + + L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 258 FLLLGGNHLQGPIP----DQLCQLQKLAM 282
+L LG N LQ +P D+L L++L +
Sbjct: 137 YLSLGYNELQS-LPKGVFDKLTSLKELRL 164
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 20/133 (15%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNY 72
I L L L + NQL P V +LT L YL L +N +
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ--------------- 146
Query: 73 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 132
L + V SL+ L L NN + + LT L+ L +NN ++ +G
Sbjct: 147 ---SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD 202
Query: 133 S-TSLQVLDISNN 144
S L++L + N
Sbjct: 203 SLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 188 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 247
+D S +L+ I S++ + + L LQ N L+ L R KL L L DN
Sbjct: 21 VDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 248 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 296
E NL L + N LQ QL LA + L RN+ S+PP
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPP 126
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 13/179 (7%)
Query: 22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHN---------NFEGEMKELSLLDLSRNY 72
L IL + SN L G + + LT LE LDLS N F G + L L L R
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRG-LGHLHTLHLDRCG 115
Query: 73 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 132
L + G +L+ L L +NN + + + +L L HL+ N +
Sbjct: 116 LQE-LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 133 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN--HLEGNVPVQLNNLERLRILD 189
SL L + N ++ PH + + + + N L V V L +L+ LR+ D
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Query: 14 TCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLL 66
T + L L L + L P + L +L+YL L NN + ++ L+ L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKI 126
L N + + G SL+ L L N+ + +L RL LY NN S
Sbjct: 158 FLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 127 KDGLLSSTSLQVLDISNN 144
+ L+ SLQ L +++N
Sbjct: 217 AEVLVPLRSLQYLRLNDN 234
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNLSSVEHLSLQKNA 217
L IL + N L G L L LD+S+N R+ P L + L L +
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFR-GLGHLHTLHLDRCG 115
Query: 218 LNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 276
L L PG LFR L L L+DN + + NL L L GN + +P+ +
Sbjct: 116 LQELGPG-LFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS-VPEHAFR 173
Query: 277 -LQKLAMMDLSRNKFSGSIPPCFANV 301
L L + L +N + P F ++
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAFRDL 199
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN--NFEGEMKE-------LSLLDLS 69
L LK L +SN+ + V +L SLE+LDLS N +F+G + L LDLS
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 70 RNYFSGGLSQSV-VTGCFSLELLDLSNNNFEGQF-FSEYMNLTRLRHLYFENNN----FS 123
F+G ++ S G LE LD ++N + FS +++L L +L + + F+
Sbjct: 382 ---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 124 GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 183
G I +GL +SL+VL ++ N + + L L +S+ LE P N+L
Sbjct: 439 G-IFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 184 RLRILDISENRL-SGPIASSLNLSSVEHLSLQKNALNGLIP 223
L++L+++ N+L S P L+S++ + L N + P
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 161 LEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 218
LE L +S+N L +G L+ LD+S N + ++ L L +EHL Q + L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 219 NGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQ 276
+ +F S + L+ L++ N S+L L + GN Q +PD +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 277 LQKLAMMDLSRNKFSGSIPPCFANVLSWRV 306
L+ L +DLS+ + P F ++ S +V
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 33/236 (13%)
Query: 15 CLKNLTRLKILDISSNQLNGSLPS--VISNLTSLEYLDLSHNN--------FEGEMKELS 64
CL+NL L+ LD+S + + S + NL+ L+ L+LS+N F+ E +L
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLE 403
Query: 65 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG 124
LLDL+ +QS L++L+LS++ + + L L+HL + N+F
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP- 462
Query: 125 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER 184
K + + SLQ L LEIL +S L +L+
Sbjct: 463 --KGNIQKTNSLQTL-------------------GRLEILVLSFCDLSSIDQHAFTSLKM 501
Query: 185 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 240
+ +D+S NRL+ +L+ +L+L N ++ ++P L + T+NLR N
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 33/238 (13%)
Query: 13 ITCLKNLTRLKILDISSNQLNGS--LPSVISNLTSLEYLDLSHNNFEG-------EMKEL 63
+ CL+ L L+ LD+S N + S + NL+ L+ L+LSHN G E +L
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 64 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 123
LLDL+ QS L++L+L+ + L LRHL + N+F
Sbjct: 400 ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF- 458
Query: 124 GKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 182
+DG ++ T+ LQ + LE+L +S L ++L
Sbjct: 459 ---QDGTITKTNLLQTV-------------------GSLEVLILSSCGLLSIDQQAFHSL 496
Query: 183 ERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 240
++ +D+S N L+ SL+ +L+L N++N + P L + T+NL N
Sbjct: 497 GKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 9/175 (5%)
Query: 26 DISSNQLNGSLPSVIS--NLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVT 83
DISS L G + NL + D+S F+ +L LDL+ + G S +
Sbjct: 239 DISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQC-FTQLQELDLTATHLKG--LPSGMK 295
Query: 84 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDIS 142
G L+ L LS N+F+ N L HLY N + G L +LQ LD+S
Sbjct: 296 GLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLS 355
Query: 143 NNML--SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 195
+N + S + N S L+ L++S N G +L +LD++ RL
Sbjct: 356 HNDIEASDCCSLQLKNL-SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL 409
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 4/159 (2%)
Query: 91 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS--GKIKDGLLSSTSLQVLDISNNMLSG 148
LD SNN F +LT L L + N KI + SLQ LDIS N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 149 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSV 208
+++ L L+MS N L + L R+++LD+ N++ + L ++
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEAL 446
Query: 209 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 247
+ L++ N L + G R L + L N + P
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-- 58
+N+ +N+I + + +L++L+IL IS N++ SV LEYLDLSHN
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 59 --EMKELSLLDLSRNYFSG 75
L LDLS N F
Sbjct: 86 CHPTVNLKHLDLSFNAFDA 104
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 149 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSS- 207
H+P + S + IL++S+N++ + +L +LRIL IS NR+ S +
Sbjct: 14 HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70
Query: 208 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG-RIPHQINEHSNLRFLLLGGNHL 266
+E+L L N L+ + L L+L N F I + S L+FL L HL
Sbjct: 71 LEYLDLSHNK---LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 267 Q 267
+
Sbjct: 128 E 128
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNL--TSLEYLDLSHN-------NFEGEMKELSLLDLS 69
L L LD+S N L+ S S+L SL +LDLS N NF G ++EL LD
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQ 402
Query: 70 RNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG 129
+ S L LD+S N + F ++ LT L L N+F KD
Sbjct: 403 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF----KDN 458
Query: 130 LLS-----STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER 184
LS +T+L LD+S L I + + L++L+MS N+L N L
Sbjct: 459 TLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 517
Query: 185 LRILDISENRL 195
L LD S NR+
Sbjct: 518 LSTLDCSFNRI 528
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNL--TSLEYLDLSHN-------NFEGEMKELSLLDLS 69
L L LD+S N L+ S S+L SL +LDLS N NF G ++EL LD
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQ 407
Query: 70 RNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG 129
+ S L LD+S N + F ++ LT L L N+F KD
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF----KDN 463
Query: 130 LLS-----STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER 184
LS +T+L LD+S L I + + L++L+MS N+L N L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522
Query: 185 LRILDISENRL 195
L LD S NR+
Sbjct: 523 LSTLDCSFNRI 533
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 7 FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF-------EGE 59
F + L N T L LD+S QL V L L+ L++SHNN +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 60 MKELSLLDLSRNYF--SGGLSQSVVTGCFSLELLDLSNN 96
+ LS LD S N S G+ Q SL +L+NN
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPK---SLAFFNLTNN 555
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF----- 56
+ + NF+ + T L+NLT LD+S QL P+ ++L+SL+ L++SHNNF
Sbjct: 161 SFQENFLPD-IFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 57 --EGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 98
+ L +LD S N+ Q + SL L+L+ N+F
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 116/262 (44%), Gaps = 40/262 (15%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLN--GSLPSVISNLTSLEYLDLSHNNFEG 58
+ LE N + S LT+L L +SSN L+ G TSL+YLDLS N
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG--- 89
Query: 59 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF-FSEYMNLTRLRHLYF 117
++ +S N+ GL Q LE LD ++N + FS +++L L +L
Sbjct: 90 ------VITMSSNFL--GLEQ--------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 118 ENNN----FSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 173
+ + F+G I +GL +SL+VL ++ N + + L L +S+ LE
Sbjct: 134 SHTHTRVAFNG-IFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189
Query: 174 NVPVQLNNLERLRILDISENRL----SGPIASSLNLSSVEHLSLQKNALNGLIPGEL--F 227
P N+L L++L++S N + P L+S++ L N + EL F
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHF 246
Query: 228 RSCKLVTLNLRDNTFSGRIPHQ 249
S L LNL N F+ HQ
Sbjct: 247 PS-SLAFLNLTQNDFACTCEHQ 267
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 139 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLS 196
L++ +N L +PH + + ++L LS+S N L +G L+ LD+S N +
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSN 255
++ L L +EHL Q + L + +F S + L+ L++ N S+
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 256 LRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 306
L L + GN Q +PD +L+ L +DLS+ + P F ++ S +V
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 419 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 463
+P+ F+ L+ + LD+S +L P +L+ L + N+S+NN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRN 71
LT LK L + NQL V LT+L YL L HN + ++ L+ LDL N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 72 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL 130
L + V L+ L L++N + + LT L H++ NN + D L
Sbjct: 168 QLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDIL 225
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 14 TCLKNLTRLKILD-ISSNQLNGSLPSVISN------------LTSLEYLDLSHNNFE--G 58
T NL + + D ++ N+LN S+ +I+N L ++ YL L N
Sbjct: 21 TIKANLKKKSVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS 79
Query: 59 EMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEYMNLTRLRH 114
+KEL+ +L+ +G QS+ G F L+ L L N + + LT L +
Sbjct: 80 ALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 115 LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 174
LY +N K T+L LD+ NN L +P + + ++L+ LS++ N L+
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKS- 195
Query: 175 VP 176
VP
Sbjct: 196 VP 197
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRN 71
LT LK L + NQL V LT+L YL+L+HN + ++ L+ LDLS N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 72 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 120
L + V L+ L L N + + LT L++++ +N
Sbjct: 168 QLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 23/188 (12%)
Query: 125 KIKDGLLSSTSLQVLDISNNMLS-------GHIPHWMGNFSSELEILSMSKNHLEGNVPV 177
++ DG+ ST+ ++L++ N + H+ H LEIL +S+NH+
Sbjct: 57 EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRH--------LEILQLSRNHIRTIEIG 106
Query: 178 QLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELF-RSCKLVTL 235
N L L L++ +NRL+ P + + LS ++ L L+ N + IP F R L L
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRL 165
Query: 236 NLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 294
+L + I E SNLR+L L +L+ IP+ L L KL +DLS N S
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIR 223
Query: 295 PPCFANVL 302
P F ++
Sbjct: 224 PGSFQGLM 231
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRN 71
L RL L + L P + L +L+YL L N + ++ L+ L L N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 72 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 131
S + + G SL+ L L N + +L RL LY NN S + L
Sbjct: 164 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 132 SSTSLQVLDISNN 144
+LQ L +++N
Sbjct: 223 PLRALQYLRLNDN 235
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 12/181 (6%)
Query: 22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHN---------NFEGEMKELSLLDLSRNY 72
L IL + SN L + + L LE LDLS N F G + L L L R
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCG 116
Query: 73 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 132
L + G +L+ L L +N + + +L L HL+ N S +
Sbjct: 117 LQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175
Query: 133 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 192
SL L + N ++ PH + L L + N+L L L L+ L +++
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
Query: 193 N 193
N
Sbjct: 235 N 235
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 8/158 (5%)
Query: 149 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNL 205
H+P L IL + N L L L LD+S+N R P A+ L
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGL 104
Query: 206 SSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 264
+ L L + L L PG LFR L L L+DN + NL L L GN
Sbjct: 105 GRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 265 HLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPPCFANV 301
+ +P++ + L L + L +N+ + P F ++
Sbjct: 164 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRN 71
L RL L + L P + L +L+YL L N + ++ L+ L L N
Sbjct: 103 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 72 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 131
S + + G SL+ L L N + +L RL LY NN S + L
Sbjct: 163 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221
Query: 132 SSTSLQVLDISNN 144
+LQ L +++N
Sbjct: 222 PLRALQYLRLNDN 234
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 12/181 (6%)
Query: 22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHN---------NFEGEMKELSLLDLSRNY 72
L IL + SN L + + L LE LDLS N F G + L L L R
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCG 115
Query: 73 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 132
L + G +L+ L L +N + + +L L HL+ N S +
Sbjct: 116 LQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 174
Query: 133 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 192
SL L + N ++ PH + L L + N+L L L L+ L +++
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLND 233
Query: 193 N 193
N
Sbjct: 234 N 234
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 8/158 (5%)
Query: 149 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNL 205
H+P L IL + N L L L LD+S+N R P A+ L
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGL 103
Query: 206 SSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 264
+ L L + L L PG LFR L L L+DN + NL L L GN
Sbjct: 104 GRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 265 HLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPPCFANV 301
+ +P++ + L L + L +N+ + P F ++
Sbjct: 163 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 91 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGH 149
LDL N+ + + LT L LY N + +G+ + TSL L++S N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 150 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSV 208
+P+ + + ++L+ L+++ N L+ + L +L+ L + +N+L S P L+S+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 209 EHLSLQKNALNGLIPG 224
+++ L N + PG
Sbjct: 151 QYIWLHDNPWDCTCPG 166
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEG- 58
++LE N + S LT L L + N+L SLP+ V + LTSL YL+LS N +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 59 ------EMKELSLLDLSRNYFSGGLSQSVVTGCF----SLELLDLSNNNFEGQFFSEYMN 108
++ +L L L+ N QS+ G F L+ L L N + +
Sbjct: 92 PNGVFDKLTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 109 LTRLRHLYFENN 120
LT L++++ +N
Sbjct: 147 LTSLQYIWLHDN 158
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 139/340 (40%), Gaps = 58/340 (17%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------------EMKELSLL 66
L L+ L++ N + G ++ + L +L+YL LS N+F L +L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS--EYMNLTRLRHLYFENNNFSG 124
+L++N S + + LE+LDL N GQ + E+ L + +Y N +
Sbjct: 387 NLTKNKISK-IESDAFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKYLQ 444
Query: 125 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQLNNL 182
++ SLQ L + L + F L IL +S N++ L L
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503
Query: 183 ERLRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGLIPGELFR---SC 230
E+L ILD+ N L+ GPI LS + L+L+ N + IP E+F+
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFEL 562
Query: 231 KLVTLNLRD-NTFSGRIPHQINEHSNLRFLLLGGNHLQ-------GPIPDQLCQLQKLAM 282
K++ L L + NT + N +L+ L L N + GP + L
Sbjct: 563 KIIDLGLNNLNTLPASV---FNNQVSLKSLNLQKNLITSVEKKVFGP------AFRNLTE 613
Query: 283 MDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 322
+D+ N F C ++W V + +N + N PEL
Sbjct: 614 LDMRFNPFD-----CTCESIAWFV---NWINETHTNIPEL 645
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN------ 54
+NLE N + K+L LKI+D+ N LN SV +N SL+ L+L N
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 55 --NFEGEMKELSLLDLSRNYF 73
F + L+ LD+ N F
Sbjct: 601 KKVFGPAFRNLTELDMRFNPF 621
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN---------------FEGEM 60
L+NLT ILD+S+N + ++ L LE LDL HNN F +
Sbjct: 479 LRNLT---ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535
Query: 61 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 120
L +L+L N F + V F L+++DL NN S + N L+ L + N
Sbjct: 536 SHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 105/234 (44%), Gaps = 33/234 (14%)
Query: 22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHN------NFEGEMKELSLLDLSRNYFSG 75
+K LD+S N L+ + ++ T LE L+LS N + E + L LDL+ NY
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLES-LSTLRTLDLNNNYV-- 92
Query: 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS--GKIKDGLLSS 133
Q ++ G S+E L +NNN S +++Y NN + + +G S
Sbjct: 93 ---QELLVGP-SIETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSR 145
Query: 134 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN---HLEGNVPVQLNNLERLRILDI 190
+Q LD+ N + + S LE L++ N ++G V +L+ LD+
Sbjct: 146 --VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDL 198
Query: 191 SENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 242
S N+L+ GP S + V +SL+ N L LI L S L +LR N F
Sbjct: 199 SSNKLAFMGPEFQS--AAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGF 249
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 27/161 (16%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GEMKELSLLDLSRN 71
+ LT+L L++ NQL V +LT L L L++N G L+ LD +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD--KL 112
Query: 72 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 131
Y G +S+ +G F LT+L+ L N
Sbjct: 113 YLGGNQLKSLPSGVFD--------------------RLTKLKELRLNTNQLQSIPAGAFD 152
Query: 132 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 172
T+LQ L +S N L +PH + +L+ +++ N +
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 159 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNA 217
++L L++ N L+ ++L L L ++ N+L+ P+ +L+ ++ L L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 218 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 277
L L G R KL L L N ++ +NL+ L L N LQ +L
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 278 QKLAMMDLSRNKFSGS 293
KL + L N+F S
Sbjct: 179 GKLQTITLFGNQFDCS 194
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP-SVISNLTSLEYLDLSHNNFEG- 58
+NL+ N + + +LT L L +++NQL SLP V +LT L+ L L N +
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSL 122
Query: 59 ------EMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEYMN 108
+ +L L L+ N QS+ G F L+ L LS N + +
Sbjct: 123 PSGVFDRLTKLKELRLNTNQL-----QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 109 LTRLRHLYFENNNF 122
L +L+ + N F
Sbjct: 178 LGKLQTITLFGNQF 191
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 139/340 (40%), Gaps = 58/340 (17%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------------EMKELSLL 66
L L+ L++ N + G ++ + L +L+YL LS N+F L +L
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHIL 391
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS--EYMNLTRLRHLYFENNNFSG 124
+L++N S + + LE+LDL N GQ + E+ L + +Y N +
Sbjct: 392 NLTKNKISK-IESDAFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKYLQ 449
Query: 125 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQLNNL 182
++ SLQ L + L + F L IL +S N++ L L
Sbjct: 450 LTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 508
Query: 183 ERLRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGLIPGELFR---SC 230
E+L ILD+ N L+ GPI LS + L+L+ N + IP E+F+
Sbjct: 509 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFEL 567
Query: 231 KLVTLNLRD-NTFSGRIPHQINEHSNLRFLLLGGNHLQ-------GPIPDQLCQLQKLAM 282
K++ L L + NT + N +L+ L L N + GP + L
Sbjct: 568 KIIDLGLNNLNTLPASV---FNNQVSLKSLNLQKNLITSVEKKVFGP------AFRNLTE 618
Query: 283 MDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 322
+D+ N F C ++W V + +N + N PEL
Sbjct: 619 LDMRFNPFD-----CTCESIAWFV---NWINETHTNIPEL 650
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 54
+NLE N + K+L LKI+D+ N LN SV +N SL+ L+L N
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN---------------FEGEM 60
L+NLT ILD+S+N + ++ L LE LDL HNN F +
Sbjct: 484 LRNLT---ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 540
Query: 61 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 120
L +L+L N F + V F L+++DL NN S + N L+ L + N
Sbjct: 541 SHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 27/161 (16%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GEMKELSLLDLSRN 71
+ LT+L L++ NQL V +LT L L L++N G L+ LD +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD--KL 112
Query: 72 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 131
Y G +S+ +G F LT+L+ L N
Sbjct: 113 YLGGNQLKSLPSGVFD--------------------RLTKLKELRLNTNQLQSIPAGAFD 152
Query: 132 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 172
T+LQ L +S N L +PH + +L+ +++ N +
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 159 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNA 217
++L L++ N L+ ++L L L ++ N+L+ P+ +L+ ++ L L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 218 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 277
L L G R KL L L N ++ +NL+ L L N LQ +L
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 278 QKLAMMDLSRNKFSGS 293
KL + L N+F S
Sbjct: 179 GKLQTITLFGNQFDCS 194
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP-SVISNLTSLEYLDLSHNNFEG- 58
+NL+ N + + +LT L L +++NQL SLP V +LT L+ L L N +
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSL 122
Query: 59 ------EMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEYMN 108
+ +L L L+ N QS+ G F L+ L LS N + +
Sbjct: 123 PSGVFDRLTKLKELRLNTNQL-----QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 109 LTRLRHLYFENNNF 122
L +L+ + N F
Sbjct: 178 LGKLQTITLFGNQF 191
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 114 HLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 172
L NN F+ G+ L+ ++ SNN ++ S EIL ++ N LE
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL-LTSNRLE 94
Query: 173 GNVPVQLNNLERLRILDISENRLSGPIASS-LNLSSVEHLSLQKNALNGLIPGELFRSCK 231
LE L+ L + NR++ S + LSSV LSL N + + PG
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 232 LVTLNLRDNTF 242
L TLNL N F
Sbjct: 155 LSTLNLLANPF 165
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 98/232 (42%), Gaps = 39/232 (16%)
Query: 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE--------GEMKE-----LSLL 66
+RLK L + ++ G++P + T L L N E+++ L +L
Sbjct: 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVL 150
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF----------FSEYMNLTRLRHLY 116
+++ + S S V +L LDLS+N G+ F NL LR+
Sbjct: 151 SIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA-LRNTG 208
Query: 117 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI----PHWMGNFSSELEILSMSKNHLE 172
E +G + LD+S+N L + P M +SS L L++S LE
Sbjct: 209 METP--TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM--WSSALNSLNLSFAGLE 264
Query: 173 GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPG 224
VP L +LR+LD+S NRL+ L V++L+L N L+PG
Sbjct: 265 -QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPF--LVPG 310
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 135 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 194
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 195 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 229
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 18 NLTRLKILDISSN----------QLNG----SLPSVISNLTSLEYLDLSHNNFEGEMKEL 63
+L+ L+I +IS+N LNG LP+ I NL++L LDLSHN EL
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
Query: 64 -SLLDLSRNYFSGGLSQSV---VTGCFSLELLDLSNNNFEGQF 102
S L YF + ++ +L+ L + N E QF
Sbjct: 290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 39/123 (31%)
Query: 159 SELEILSMSKN----------HLEGN----VPVQLNNLERLRILDISENRLSGPIASSLN 204
S L+I ++S N +L GN +P ++ NL LR+LD+S NRL+
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS------- 284
Query: 205 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 264
+P EL +L DN + +P + NL+FL + GN
Sbjct: 285 -----------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Query: 265 HLQ 267
L+
Sbjct: 327 PLE 329
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 135 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 194
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 195 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 229
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 105/234 (44%), Gaps = 33/234 (14%)
Query: 22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHN------NFEGEMKELSLLDLSRNYFSG 75
+K LD+S N L+ + ++ T LE L+LS N + E + L LDL+ NY
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLES-LSTLRTLDLNNNYV-- 92
Query: 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS--GKIKDGLLSS 133
Q ++ G S+E L +NNN S +++Y NN + + +G S
Sbjct: 93 ---QELLVGP-SIETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSR 145
Query: 134 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN---HLEGNVPVQLNNLERLRILDI 190
+Q LD+ N + + S LE L++ N ++G V +L+ LD+
Sbjct: 146 --VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDL 198
Query: 191 SENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 242
S N+L+ GP S + V +SL+ N L LI L S L +LR N F
Sbjct: 199 SSNKLAFMGPEFQS--AAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGF 249
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 135 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 194
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 195 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 229
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE-----GEMKELSLLD 67
+T LKNLT++ L++S N L S I+ L S++ LDL+ + L +L
Sbjct: 84 LTPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 141
Query: 68 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 123
L N + + S + G +L+ L + NN + NL++L L ++N S
Sbjct: 142 LDLNQIT---NISPLAGLTNLQYLSIGNNQVND--LTPLANLSKLTTLRADDNKIS 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 135 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 194
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 195 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 229
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 118/293 (40%), Gaps = 44/293 (15%)
Query: 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNY 72
T L LD+S N L+ S L SL YL L +NN + + L L L R +
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAF 307
Query: 73 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 132
QSV ++ + +F+ + EY+N+ ++N F+G + LS
Sbjct: 308 ----TKQSVSLASHP----NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLS 359
Query: 133 ----STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL 188
TSLQ L + H P L L+++KNH+ + L +LRIL
Sbjct: 360 LSKTFTSLQTLTNETFVSLAHSP---------LLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 189 DIS----ENRLSGPIASSLN------LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 238
D+ E +LSG L LS ++L L ++ L+P + L + L+
Sbjct: 411 DLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF-ALVPS--LQRLMLRRVALK 467
Query: 239 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291
+ S P NL L L N++ D L L+ L ++D N +
Sbjct: 468 NVDIS---PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 130/325 (40%), Gaps = 57/325 (17%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH-----NNFEGEM------KELSLLD 67
L L+ L++ N + + + + L SL+YL LS E L L+
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 68 LSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFF-SEYMNLTRLRHLYFENNNF 122
L++N+ S + G FS L +LDL N E + E+ L + +Y N +
Sbjct: 388 LTKNHIS-----KIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 123 ----------SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 172
++ +L +L+ +DIS + L IL +S N++
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRP---------LRNLTILDLSNNNIA 493
Query: 173 GNVPVQLNNLERLRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGLIP 223
L LE L ILD N L+ GP+ LS + L+L+ N L+ IP
Sbjct: 494 NINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDE-IP 552
Query: 224 GELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL-CQLQKLA 281
+F++ +L ++NL N + P ++ ++LR L L N + D Q L
Sbjct: 553 VGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLN 612
Query: 282 MMDLSRNKFSGSIPPCFANVLSWRV 306
+D+ N F C +SW V
Sbjct: 613 SLDMRFNPFD-----CTCESISWFV 632
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 349 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 398
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 349 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 398
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 349 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 398
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 63 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 118
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS-LQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 119 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 176
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 177 TLLLQENSL 185
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 63 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 115
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 175
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 176 DTLLLQENSL 185
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 170 HLEGN----VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPG 224
+L+GN VP +L+N + L ++D+S NR+S S N++ + L L N L IP
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPP 95
Query: 225 ELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 266
F K L L+L N S N+ S L L +G N L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 65 LLDLSRNYFSGGLSQSVVTGCF----SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 120
L++L + YF+ ++ TG F L LDL++N+ + + NL L H+Y NN
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Query: 121 NFSGKIKD 128
+ + +D
Sbjct: 116 PWDCECRD 123
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN------ 54
+NLE N + K+L LKI+D+ N LN SV +N SL+ L+L N
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 610
Query: 55 --NFEGEMKELSLLDLSRNYF 73
F + L+ LD+ N F
Sbjct: 611 KKVFGPAFRNLTELDMRFNPF 631
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN---------------FEGEM 60
L+NLT ILD+S+N + ++ L LE LDL HNN F +
Sbjct: 489 LRNLT---ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 545
Query: 61 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 120
L +L+L N F + V F L+++DL NN S + N L+ L + N
Sbjct: 546 SHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 15/119 (12%)
Query: 136 LQVLDISNNMLS---GHI----PHWMGNFSSELEILSMSKNHLEGNVPVQL-NNLERLRI 187
L++LD+ +N L+ H P + S L IL++ N + +PV++ +L L+I
Sbjct: 516 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKI 574
Query: 188 LDISENRLSGPIASSL-NLSSVEHLSLQKNALNGL---IPGELFRSCKLVTLNLRDNTF 242
+D+ N L+ AS N S++ L+LQKN + + + G FR+ L L++R N F
Sbjct: 575 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN--LTELDMRFNPF 631
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 42/292 (14%)
Query: 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKE-------LSLLDLSRNY 72
T L +LD+S N LN + L LEY L +NN + + L+L R++
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 317
Query: 73 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 132
+S + SL +D +F Q+ L L HL E+N+ G +
Sbjct: 318 TKQSISLA------SLPKID----DFSFQW------LKCLEHLNMEDNDIPGIKSNMFTG 361
Query: 133 STSLQVLDISNNMLSGHI---PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILD 189
+L+ L +SN+ S ++ S L IL+++KN + + L L +LD
Sbjct: 362 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 421
Query: 190 ISENRLSGPIASS----------LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 239
+ N + + + LS ++L L +N+ L+P + V L D
Sbjct: 422 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVD 480
Query: 240 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291
++ P NL L L N++ D L L+KL ++DL N +
Sbjct: 481 SS-----PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 49/306 (16%)
Query: 19 LTRLKILDISSNQLNGSLPS--VISNLTSLEYLDLSHNNFEG--------EMKELSLLDL 68
L L++L ++ L+G++ S LTSLE L L NN + M+ +LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 69 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN--FSGKI 126
+ N + ++ NF+G+ F+ L RL + ++ N + G
Sbjct: 162 TFNKVKSICEEDLL--------------NFQGKHFT----LLRLSSITLQDMNEYWLGWE 203
Query: 127 KDG-LLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM----------SKNHLEGNV 175
K G +TS+ LD+S N + + + +I S+ S H
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 176 P--VQLNNLER--LRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC 230
P LE ++ D+S++++ + S + + +E L+L +N +N + +
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 231 KLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 289
L+ LNL N F G I ++ E+ L L L NH++ L L + L N+
Sbjct: 324 HLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 290 FSGSIP 295
S+P
Sbjct: 383 LK-SVP 387
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE 57
+NL +NF+GS +NL +L++LD+S N + L +L+ L L N +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKE-------LSL 65
I +K+LT+LK L++ SNQ+ S SV++NL+ L L L++N E E L+
Sbjct: 258 INAVKDLTKLKXLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTT 315
Query: 66 LDLSRNYFS 74
L LS+N+ +
Sbjct: 316 LFLSQNHIT 324
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 141 ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA 200
IS++ L G +PH L L + +N L G P ++ L + EN++ I+
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94
Query: 201 SS--LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 242
+ L L ++ L+L N ++ ++PG L +LNL N F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 160 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNAL 218
LEIL +SKN + N L L L++ +NRL+ P + LS + L L+ N +
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 219 NGLIPGELF-RSCKLVTLNL---------RDNTFSGRIPHQINEHSNLRFLLLGGNHLQG 268
IP F R L L+L + F G + NLR+L LG +L+
Sbjct: 120 ES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV--------NLRYLNLGMCNLKD 170
Query: 269 PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 305
IP+ L L +L ++LS N+ P F + S R
Sbjct: 171 -IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSG 75
L L RL+ L++S N+L+ P LTSL L L H + + RN F
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH---------AQVATIERNAFD- 223
Query: 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 120
SLE L+LS+NN + L RL ++ +N
Sbjct: 224 --------DLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 18/159 (11%)
Query: 48 YLDLSHNNFE-------GEMKELSLLDLSRNYFSGGLSQSVVTGCF----SLELLDLSNN 96
YL+L N+ + ++ L +L LS+N L + + G F SL L+L +N
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKN-----LVRKIEVGAFNGLPSLNTLELFDN 93
Query: 97 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 156
+ L++LR L+ NN SL+ LD+ +I
Sbjct: 94 RLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFE 153
Query: 157 FSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 195
L L++ +L+ ++P L L RL L++S NRL
Sbjct: 154 GLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRL 190
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 46 LEYLDLSHNNFEGEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFF 103
L+ +L+ +G + L LDLS N L Q++ +L +LD+S N
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPL 117
Query: 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELE 162
L L+ LY + N + GLL+ T L+ L ++NN L+ +P + N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175
Query: 163 ILSMSKNHL 171
L + +N L
Sbjct: 176 TLLLQENSL 184
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 196
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 257 RFLLLGGNHL 266
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 160 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNAL 218
LEIL +SKN + N L L L++ +NRL+ P + LS + L L+ N +
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 219 NGLIPGELF-RSCKLVTLNL---------RDNTFSGRIPHQINEHSNLRFLLLGGNHLQG 268
IP F R L L+L + F G + NLR+L LG +L+
Sbjct: 120 ES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV--------NLRYLNLGMCNLKD 170
Query: 269 PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 305
IP+ L L +L ++LS N+ P F + S R
Sbjct: 171 -IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH-------NNFEGEMKELSLLDL 68
L L RL+ L++S N+L+ P LTSL L L H N ++K L L+L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 69 SRNYFSGGLSQSVVTGCFSLELLDLSNN 96
S N L + T LE + L++N
Sbjct: 234 SHNNLM-SLPHDLFTPLHRLERVHLNHN 260
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 139 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SG 197
L++ +N L +PH + + ++L LS+S+N ++ + L +L IL + EN+L S
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 198 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH 248
P L+ ++ L+L N L + G R L + L N + P
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEG 58
+L LK L+++ N + LP SNLT+LE+LDLS N +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFE 57
+L LK L+++ N + LP SNLT+LE+LDLS N +
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFE 57
+L LK L+++ N + LP SNLT+LE+LDLS N +
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFE 57
+L LK L+++ N + LP SNLT+LE+LDLS N +
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFE 57
+L LK L+++ N + LP SNLT+LE+LDLS N +
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLD-LSRNYFS 74
L+N + LKI+D+ +N L LP + SLE++ +N E E+ EL L L+ Y
Sbjct: 149 LQNSSFLKIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLE-ELPELQNLPFLTAIYAD 203
Query: 75 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG---------- 124
+ + SLE + NN E E NL L +Y +NN
Sbjct: 204 NNSLKKLPDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261
Query: 125 -KIKDGLLS-----STSLQVLDISNNMLSG 148
++D L+ SL LD+S N+ SG
Sbjct: 262 LNVRDNYLTDLPELPQSLTFLDVSENIFSG 291
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 107
+L + S GL+ VVTG L LL+ +NF G F E M
Sbjct: 116 ELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 107
+L + S GL+ VVTG L LL+ +NF G F E M
Sbjct: 116 ELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 107
+L + S GL+ VVTG L LL+ +NF G F E M
Sbjct: 116 ELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 107
+L + S GL+ VVTG L LL+ +NF G F E M
Sbjct: 116 ELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 107
+L + S GL+ VVTG L LL+ +NF G F E M
Sbjct: 116 ELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 107
+L + S GL+ VVTG L LL+ +NF G F E M
Sbjct: 116 ELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 67 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 107
+L + S GL+ VVTG L LL+ +NF G F E M
Sbjct: 116 ELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 50/204 (24%)
Query: 21 RLKILDISSNQLNGSLPSVISNLTSLE--------YLDLSHNNFE----GEMKELSLLDL 68
++ LD+S N+L L +N+T L+ +LD S N + +L+ D
Sbjct: 181 KITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDC 240
Query: 69 SRNYFS----GGLSQSVVTGCFSLELL--DLSNNN------FEGQFFSEYMNLTRLRHLY 116
S N + LS+ C +LL DL++N EG + +++T LY
Sbjct: 241 SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300
Query: 117 FENNNFSGKIKDGL----------LSSTSLQVLDISNNM----LS------------GHI 150
+ +G + L L++T L LD+S+N LS G I
Sbjct: 301 LLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKI 360
Query: 151 PHWMGNFSSELEILSMSKNHLEGN 174
P NF +E + ++M K L N
Sbjct: 361 PALNNNFEAEGQTITMPKETLTNN 384
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLS 78
LT L L +S N LN + +L YLDLS N+ + E DL
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQ--------- 112
Query: 79 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS----GKIKDGLLSST 134
+LE+L L NN+ + + ++ +L+ LY N S IKDG
Sbjct: 113 --------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-NKLP 163
Query: 135 SLQVLDISNNMLSG-------HIPHWMGN 156
L +LD+S+N L +P W+ N
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 64 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 123
+LLDLS N S ++ T +L L LS+N+ ++ + LR+L +N+
Sbjct: 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 124 GKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL--- 179
+ + L S +L+VL + NN + + + ++L+ L +S+N + PV+L
Sbjct: 102 T-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQI-SRFPVELIKD 158
Query: 180 -NNLERLRILDISENRL 195
N L +L +LD+S N+L
Sbjct: 159 GNKLPKLMLLDLSSNKL 175
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 126 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL-----EGNVPVQLN 180
+ L S T+L LD+S+N LS W + L L +S NHL E VPV
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV--- 87
Query: 181 NLERLRILDISENRL 195
LR LD+S N L
Sbjct: 88 --PNLRYLDLSSNHL 100
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 381 VTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYN--- 437
V LDLS N++T SD+ + + A +SFS+L +E LD+SYN
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 438 KLTGQIPPQLTALNFLSIFNVSYNNL 463
L+ L++L FL++ Y L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTL 139
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 89 ELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLS 147
++L L +N + +L L+ LY +N G + G+ S T L VLD+ N L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 148 GHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLS 206
+P + + L+ L M N L +P + L L L + +N+L S P + LS
Sbjct: 102 V-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 207 SVEHLSLQKN 216
S+ H L N
Sbjct: 160 SLTHAYLFGN 169
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 115 LYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 173
LY +N + K++ G+ S +L+ L + +N L G +P + + ++L +L + N L
Sbjct: 45 LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 174 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFR 228
+ L L+ L + N+L+ L+ + HL+L +N L + G R
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 87 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 146
+++ LDLS N + L+ L +++ + D S SL+ LD+S+N L
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 147 SGHIPHWMGNFSSELEILSMSKNHLE----GNVPVQLNNLERLRILDISE----NRLSGP 198
S W G SS L+ L++ N + ++ L NL+ LRI ++ R+
Sbjct: 113 SSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 171
Query: 199 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 258
+SLN ++ LSL+ L + R +TL+L ++ F I I S++R+
Sbjct: 172 GLTSLNELEIKALSLRNYQSQSL---KSIRDIHHLTLHLSESAFLLEIFADI--LSSVRY 226
Query: 259 LLLGGNHLQ----GPIP-DQLCQ-LQKLAM 282
L L +L P+P D++ ++KLA
Sbjct: 227 LELRDTNLARFQFSPLPVDEVSSPMKKLAF 256
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 66/192 (34%)
Query: 42 NLTSLEYLDLSHNNFEGE------------------------------------MKELSL 65
+L SLE+LDLS N E +K L+
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 417
Query: 66 LDLSRNYF-------------------SGGLSQSVVTGCF--SLELLDLSNNNFEGQFFS 104
LD+SRN F S G+ VV C +LE+LD+SNNN + FS
Sbjct: 418 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGI--RVVKTCIPQTLEVLDVSNNNLDS--FS 473
Query: 105 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 164
+ L RL+ LY N + D L L V+ I++N L +P + + + L+ +
Sbjct: 474 LF--LPRLQELYISRNKLK-TLPDASLFPV-LLVMKIASNQLKS-VPDGIFDRLTSLQKI 528
Query: 165 SMSKNHLEGNVP 176
+ N + + P
Sbjct: 529 WLHTNPWDCSCP 540
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 134 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRI-LDI 190
TSL+VL + NN L+ ++ LE L +S N LE VPV+ ++ E I
Sbjct: 160 TSLEVLSVRNNQLT-----FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 191 SENRLSGPIASSLNLSSVEHLSLQKNALNGLI 222
ENR++ + L+L + L+ N L+ I
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDNPLSSRI 246
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 381 VTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKL- 439
V LDLS N++T SD+ + + A +SFS+L +E LD+SYN L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 440 ---TGQIPPQLTALNFLSIFNVSYNNL 463
+ P L++L FL++ Y L
Sbjct: 88 NLSSSWFKP-LSSLTFLNLLGNPYKTL 113
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 69 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD 128
S N GL+++V + LDLSNN S+ L+ L +N + +D
Sbjct: 16 SLNSIPSGLTEAVKS-------LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 68
Query: 129 GLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 159
S SL+ LD+S N LS W SS
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE-----GEMKELSLLD 67
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ +K L +L+
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 203
Query: 68 L 68
L
Sbjct: 204 L 204
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 87 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 146
+++ LDLS N + L+ L +++ + D S SL+ LD+S+N L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 147 SGHIPHWMGNFSSELEILSMSKNHLE----GNVPVQLNNLERLRILDISE----NRLSGP 198
S W G SS L+ L++ N + ++ L NL+ LRI ++ R+
Sbjct: 87 SSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 199 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 258
+SLN ++ LSL+ L + R +TL+L ++ F I I S++R+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSL---KSIRDIHHLTLHLSESAFLLEIFADI--LSSVRY 200
Query: 259 LLLGGNHLQ----GPIP-DQLCQ-LQKLAM 282
L L +L P+P D++ ++KLA
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 66/192 (34%)
Query: 42 NLTSLEYLDLSHNNFEGE------------------------------------MKELSL 65
+L SLE+LDLS N E +K L+
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391
Query: 66 LDLSRNYF-------------------SGGLSQSVVTGCF--SLELLDLSNNNFEGQFFS 104
LD+SRN F S G+ VV C +LE+LD+SNNN + FS
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGI--RVVKTCIPQTLEVLDVSNNNLDS--FS 447
Query: 105 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 164
+ L RL+ LY N + D L L V+ IS N L +P + + + L+ +
Sbjct: 448 LF--LPRLQELYISRNKLK-TLPDASLFPV-LLVMKISRNQLKS-VPDGIFDRLTSLQKI 502
Query: 165 SMSKNHLEGNVP 176
+ N + + P
Sbjct: 503 WLHTNPWDCSCP 514
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSG 75
LKNLT++ L++S N L S I+ L S++ LDL+ L +L Y
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD- 137
Query: 76 GLSQ----SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 123
L+Q S + G +L+ L + N + NL++L L ++N S
Sbjct: 138 -LNQITNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS 186
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 66/174 (37%), Gaps = 27/174 (15%)
Query: 90 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH 149
LLDL NN+ ++ L L L NN S + LQ L IS N L
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 150 IPHWMGNFSSELEI---------------------LSMSKNHLE--GNVPVQLNNLERLR 186
IP + + EL I + M N LE G P + L +L
Sbjct: 117 IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175
Query: 187 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 240
L ISE +L+G I L ++ L L N + + +L R KL L L N
Sbjct: 176 YLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE-----GEMKELSLLD 67
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ +K L +L+
Sbjct: 149 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 206
Query: 68 L 68
L
Sbjct: 207 L 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,317,108
Number of Sequences: 62578
Number of extensions: 642773
Number of successful extensions: 2209
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1336
Number of HSP's gapped (non-prelim): 500
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)