Query 008024
Match_columns 580
No_of_seqs 699 out of 4823
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 18:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-54 2.3E-59 495.5 32.9 477 1-491 123-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.8E-52 1.5E-56 472.4 32.3 489 1-491 74-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.6E-41 1.4E-45 326.4 6.8 378 1-459 57-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.3E-39 2.9E-44 317.3 6.7 361 1-439 83-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1E-39 2.2E-44 304.9 -11.7 442 1-487 50-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 8.1E-38 1.8E-42 292.2 -11.2 368 3-464 98-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 2.3E-35 5E-40 289.7 -2.5 359 2-469 13-380 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 1.2E-34 2.7E-39 284.6 -3.0 371 18-491 5-379 (1255)
9 KOG0618 Serine/threonine phosp 100.0 1.5E-32 3.3E-37 282.0 -0.1 435 1-488 26-490 (1081)
10 KOG0618 Serine/threonine phosp 100.0 5E-31 1.1E-35 270.9 -0.7 244 134-462 241-487 (1081)
11 KOG4237 Extracellular matrix p 99.9 2.6E-30 5.6E-35 241.8 -6.7 272 1-291 72-359 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.1E-24 2.3E-29 249.4 26.0 223 62-295 590-819 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.4E-23 3.1E-28 240.1 25.9 347 37-462 551-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 8.4E-23 1.8E-27 217.3 17.0 194 62-291 202-395 (788)
15 KOG4237 Extracellular matrix p 99.9 1.2E-25 2.5E-30 210.8 -5.8 355 76-461 81-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 2.3E-22 5E-27 214.0 17.2 261 1-302 206-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-20 3.2E-25 201.6 13.8 180 63-291 180-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.6E-20 3.6E-25 201.2 12.4 230 20-298 178-407 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.5E-20 5.5E-25 185.9 2.5 85 378-462 220-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 8.9E-20 1.9E-24 182.0 3.6 276 1-289 3-318 (319)
21 KOG0617 Ras suppressor protein 99.7 4.9E-20 1.1E-24 153.8 -4.0 89 200-291 27-115 (264)
22 KOG0617 Ras suppressor protein 99.7 2.8E-18 6.1E-23 143.3 -4.1 166 106-300 29-194 (264)
23 PLN03150 hypothetical protein; 99.6 2.9E-16 6.2E-21 168.2 9.7 117 380-496 419-537 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 2.5E-14 5.4E-19 141.2 -2.7 171 208-464 77-247 (722)
25 COG4886 Leucine-rich repeat (L 99.3 1.7E-12 3.7E-17 133.3 8.6 199 187-470 97-296 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 5.7E-14 1.2E-18 138.7 -3.6 193 86-288 75-270 (722)
27 COG4886 Leucine-rich repeat (L 99.3 4.1E-12 9E-17 130.4 7.8 191 24-223 97-294 (394)
28 PLN03150 hypothetical protein; 99.3 1E-11 2.2E-16 133.4 10.4 91 378-468 441-532 (623)
29 KOG3207 Beta-tubulin folding c 99.3 1.2E-12 2.7E-17 125.6 1.1 209 17-244 118-340 (505)
30 KOG1909 Ran GTPase-activating 99.2 2.1E-12 4.6E-17 120.7 0.4 239 14-267 24-311 (382)
31 KOG1909 Ran GTPase-activating 99.2 3.9E-12 8.4E-17 119.0 1.7 232 60-291 29-311 (382)
32 PF14580 LRR_9: Leucine-rich r 99.2 2E-11 4.3E-16 107.3 5.5 110 16-147 15-126 (175)
33 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.8E-16 112.9 1.6 208 176-468 207-416 (490)
34 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.9E-16 112.9 -0.4 103 87-196 285-387 (490)
35 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.3E-15 102.8 4.6 124 63-192 21-149 (175)
36 KOG3207 Beta-tubulin folding c 99.1 4.3E-11 9.4E-16 115.2 1.4 161 59-220 119-285 (505)
37 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.5E-15 82.1 3.0 60 404-463 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 4.9E-10 1.1E-14 81.0 3.2 61 379-439 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.6E-14 118.9 8.3 59 377-435 768-827 (889)
40 KOG0531 Protein phosphatase 1, 98.9 1.3E-10 2.8E-15 119.5 -1.0 240 18-271 70-322 (414)
41 KOG0531 Protein phosphatase 1, 98.9 1.8E-10 4E-15 118.4 -0.8 263 19-296 48-323 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.9 2E-09 4.4E-14 118.3 7.0 248 43-296 522-788 (889)
43 KOG4579 Leucine-rich repeat (L 98.6 6.3E-09 1.4E-13 84.5 -0.8 89 379-470 77-165 (177)
44 KOG2120 SCF ubiquitin ligase, 98.4 1E-08 2.3E-13 94.2 -3.4 175 87-264 186-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 1.7E-09 3.8E-14 110.4 -9.3 173 37-219 102-292 (1096)
46 KOG1859 Leucine-rich repeat pr 98.4 5.1E-09 1.1E-13 107.0 -6.0 128 134-267 164-292 (1096)
47 KOG2982 Uncharacterized conser 98.4 9.5E-08 2.1E-12 88.0 2.1 107 40-146 41-158 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.4 9.8E-08 2.1E-12 86.7 0.6 184 106-291 88-316 (388)
49 COG5238 RNA1 Ran GTPase-activa 98.3 3.3E-07 7.1E-12 83.4 3.7 239 15-268 25-317 (388)
50 KOG4579 Leucine-rich repeat (L 98.3 6.2E-08 1.3E-12 78.9 -1.8 111 21-153 28-141 (177)
51 KOG2982 Uncharacterized conser 98.3 1.4E-07 3E-12 86.9 -0.3 200 19-220 44-263 (418)
52 KOG2120 SCF ubiquitin ligase, 98.3 2.3E-08 5.1E-13 91.9 -5.8 175 111-288 186-373 (419)
53 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3E-11 57.5 2.5 36 404-440 2-37 (44)
54 PF12799 LRR_4: Leucine Rich r 98.0 2.2E-06 4.8E-11 56.5 1.8 38 427-465 1-38 (44)
55 PRK15386 type III secretion pr 98.0 1.7E-05 3.7E-10 78.7 8.6 73 204-289 50-123 (426)
56 KOG1644 U2-associated snRNP A' 97.8 3.7E-05 8E-10 67.4 5.8 99 22-123 21-126 (233)
57 KOG3665 ZYG-1-like serine/thre 97.8 1.9E-05 4.2E-10 85.1 4.5 192 17-212 57-281 (699)
58 KOG3665 ZYG-1-like serine/thre 97.8 7.7E-06 1.7E-10 88.1 1.0 133 86-221 122-265 (699)
59 KOG1644 U2-associated snRNP A' 97.8 6.5E-05 1.4E-09 65.9 6.3 85 205-291 41-126 (233)
60 PRK15386 type III secretion pr 97.7 0.00011 2.5E-09 73.0 8.9 32 206-240 156-187 (426)
61 PF13306 LRR_5: Leucine rich r 97.4 0.0003 6.6E-09 59.4 6.1 108 12-142 4-111 (129)
62 KOG4341 F-box protein containi 97.4 1.6E-05 3.4E-10 77.1 -2.6 271 20-290 138-438 (483)
63 KOG4341 F-box protein containi 97.3 1.4E-05 3E-10 77.5 -4.6 269 15-285 159-459 (483)
64 PF13306 LRR_5: Leucine rich r 97.2 0.00071 1.5E-08 57.1 5.5 104 76-185 25-128 (129)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00027 5.8E-09 64.8 2.3 16 132-147 114-129 (260)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00043 9.3E-09 63.5 2.1 104 41-145 40-154 (260)
67 KOG2123 Uncharacterized conser 96.7 0.00017 3.7E-09 66.4 -2.7 87 60-151 18-105 (388)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0017 3.8E-08 35.5 1.0 19 429-448 2-20 (22)
69 KOG2123 Uncharacterized conser 96.2 0.0006 1.3E-08 62.9 -2.2 97 18-116 17-123 (388)
70 KOG1947 Leucine rich repeat pr 95.9 0.0028 6E-08 67.0 1.0 229 17-266 185-439 (482)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0039 8.5E-08 34.0 0.7 20 405-425 2-21 (22)
72 KOG1947 Leucine rich repeat pr 95.7 0.0034 7.3E-08 66.4 0.7 15 227-241 359-373 (482)
73 KOG0473 Leucine-rich repeat pr 94.8 0.0018 4E-08 58.2 -3.9 84 378-464 41-124 (326)
74 KOG4308 LRR-containing protein 94.4 0.00089 1.9E-08 69.3 -8.1 78 21-99 88-185 (478)
75 KOG4308 LRR-containing protein 94.0 0.0009 1.9E-08 69.3 -9.0 183 63-245 89-305 (478)
76 PF13504 LRR_7: Leucine rich r 93.8 0.028 6.1E-07 28.4 0.8 13 428-440 2-14 (17)
77 smart00369 LRR_TYP Leucine-ric 91.5 0.18 3.9E-06 28.7 2.2 22 61-83 2-23 (26)
78 smart00370 LRR Leucine-rich re 91.5 0.18 3.9E-06 28.7 2.2 22 61-83 2-23 (26)
79 smart00370 LRR Leucine-rich re 91.3 0.14 3E-06 29.1 1.6 14 427-440 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 91.3 0.14 3E-06 29.1 1.6 14 427-440 2-15 (26)
81 PF13516 LRR_6: Leucine Rich r 90.2 0.058 1.3E-06 30.0 -0.7 13 428-440 3-15 (24)
82 PF13516 LRR_6: Leucine Rich r 89.9 0.1 2.2E-06 29.0 0.1 21 403-423 2-22 (24)
83 KOG0473 Leucine-rich repeat pr 89.4 0.015 3.2E-07 52.6 -5.4 88 104-195 36-123 (326)
84 KOG4242 Predicted myosin-I-bin 87.8 3.2 6.8E-05 42.1 8.8 100 20-121 165-279 (553)
85 KOG3864 Uncharacterized conser 87.3 0.11 2.5E-06 46.1 -1.1 83 21-119 102-185 (221)
86 KOG3864 Uncharacterized conser 86.1 0.13 2.8E-06 45.7 -1.4 81 380-460 102-185 (221)
87 smart00364 LRR_BAC Leucine-ric 79.9 1.1 2.4E-05 25.4 1.2 13 428-440 3-15 (26)
88 smart00365 LRR_SD22 Leucine-ri 79.5 1.3 2.9E-05 25.2 1.4 14 427-440 2-15 (26)
89 smart00368 LRR_RI Leucine rich 71.1 2.6 5.6E-05 24.4 1.2 14 427-440 2-15 (28)
90 TIGR00864 PCC polycystin catio 68.7 2.8 6E-05 51.9 1.9 33 409-441 1-33 (2740)
91 KOG4242 Predicted myosin-I-bin 65.8 23 0.0005 36.2 7.3 18 82-99 264-281 (553)
92 PF01102 Glycophorin_A: Glycop 65.7 6 0.00013 32.5 2.7 18 534-551 70-87 (122)
93 PF12273 RCR: Chitin synthesis 61.9 5.4 0.00012 33.4 1.9 10 546-555 18-27 (130)
94 PF06716 DUF1201: Protein of u 60.4 14 0.00031 23.9 3.1 32 529-560 7-38 (54)
95 PF02439 Adeno_E3_CR2: Adenovi 60.3 19 0.00042 22.5 3.5 14 528-541 7-20 (38)
96 PF00558 Vpu: Vpu protein; In 57.0 12 0.00026 28.1 2.7 9 560-568 37-45 (81)
97 PF15102 TMEM154: TMEM154 prot 48.6 6.3 0.00014 33.2 0.2 22 535-556 66-87 (146)
98 PF07204 Orthoreo_P10: Orthore 48.6 21 0.00047 27.3 2.9 29 527-555 41-69 (98)
99 KOG3763 mRNA export factor TAP 46.5 12 0.00027 38.8 1.9 58 42-100 216-284 (585)
100 KOG3763 mRNA export factor TAP 45.1 13 0.00029 38.7 1.9 64 59-124 216-284 (585)
101 PRK14762 membrane protein; Pro 42.9 38 0.00082 18.8 2.5 20 529-548 4-23 (27)
102 PF00558 Vpu: Vpu protein; In 40.6 43 0.00093 25.2 3.5 13 556-568 37-49 (81)
103 PRK00523 hypothetical protein; 39.3 48 0.001 24.2 3.4 19 542-560 17-35 (72)
104 PF15179 Myc_target_1: Myc tar 38.9 43 0.00092 29.3 3.7 25 527-551 23-47 (197)
105 PRK01844 hypothetical protein; 36.2 55 0.0012 23.9 3.3 17 544-560 18-34 (72)
106 TIGR00864 PCC polycystin catio 35.2 27 0.00059 43.9 2.7 32 2-33 1-32 (2740)
107 PF15050 SCIMP: SCIMP protein 32.8 52 0.0011 26.5 3.0 12 528-539 9-20 (133)
108 PF02009 Rifin_STEVOR: Rifin/s 32.5 44 0.00096 32.4 3.2 17 539-555 267-283 (299)
109 PF04478 Mid2: Mid2 like cell 32.2 11 0.00023 32.1 -0.9 9 565-573 98-106 (154)
110 smart00367 LRR_CC Leucine-rich 30.8 31 0.00066 19.3 1.1 12 427-438 2-13 (26)
111 PF01299 Lamp: Lysosome-associ 30.3 36 0.00079 33.4 2.3 17 543-559 287-303 (306)
112 PHA03099 epidermal growth fact 28.5 62 0.0013 26.6 2.8 27 534-560 106-132 (139)
113 PF12191 stn_TNFRSF12A: Tumour 27.8 20 0.00043 29.2 0.0 18 542-559 93-110 (129)
114 PF08374 Protocadherin: Protoc 27.8 26 0.00056 31.7 0.7 20 527-546 37-56 (221)
115 TIGR00847 ccoS cytochrome oxid 24.9 1.2E+02 0.0026 20.6 3.3 21 529-549 4-24 (51)
116 PHA03029 hypothetical protein; 23.6 1.9E+02 0.004 21.1 4.2 12 552-563 46-57 (92)
117 PF11770 GAPT: GRB2-binding ad 20.6 74 0.0016 26.9 2.0 12 541-552 23-34 (158)
118 PF04789 DUF621: Protein of un 20.2 1.1E+02 0.0024 29.1 3.2 45 535-579 26-74 (305)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-54 Score=495.50 Aligned_cols=477 Identities=31% Similarity=0.465 Sum_probs=368.9
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.+++.+|. +.+++|++|+|++|.+++..|..++++++|++|+|++|.+.+ ++++|++|++++|.+
T Consensus 123 L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred EECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 57888888876664 457888888888888888888888888888888888888764 677888888888888
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhH
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 153 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 153 (580)
++.+|..+ .++++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..
T Consensus 201 ~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 201 VGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred cCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh
Confidence 87777765 67888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCC
Q 008024 154 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 232 (580)
Q Consensus 154 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 232 (580)
+..++. |+.|++++|.+.+.+|..+.++++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++.+|..+..+++|
T Consensus 280 l~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 280 IFSLQK-LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred HhhccC-cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 888777 8888888888888888888888888888888888887666655 78888888888888888888888888888
Q ss_pred CEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccc--cCC
Q 008024 233 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG--SDD 310 (580)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~--~~~ 310 (580)
+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.+... ..+
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 888888888888888888888888888888888888888888888888888888888888888777776655542 223
Q ss_pred cccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceee--cccccccccEEEccC
Q 008024 311 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY--NGSNVNRVTGLDLSC 388 (580)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~ 388 (580)
.+.+...........+....+..+.........+. ...++ .+....+...... ....+++|+.|+|++
T Consensus 439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~---------~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLE---------NLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred cccCccChhhccCCCCcEEECcCceeeeecCcccc-cccce---------EEECcCCccCCccChhhhhhhccCEEECcC
Confidence 32222111000000111111111111100000000 00000 0111111110011 123578899999999
Q ss_pred CcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCC
Q 008024 389 NQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 468 (580)
Q Consensus 389 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 468 (580)
|.+.+.+|..+..+++|++|+|++|.+++.+|..|+.+++|++|||++|++++.+|..+..+++|+++++++|+++|.+|
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCcccCCCcCCCCcc
Q 008024 469 DKGQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 469 ~~~~~~~~~~~~~~gN~~lc~~~ 491 (580)
..+++.++...++.||+.+|+..
T Consensus 589 ~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 589 STGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.8e-52 Score=472.42 Aligned_cols=489 Identities=31% Similarity=0.473 Sum_probs=385.4
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccC-CCCCCCEEEcccCCCcc-----cCCCCcEEEccccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVIS-NLTSLEYLDLSHNNFEG-----EMKELSLLDLSRNYFS 74 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n~~~ 74 (580)
|+|++|.+++..+..|..+++|++|+|++|++.+.+|..+. .+++|++|+|++|.+++ .+++|++|++++|.++
T Consensus 74 L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~ 153 (968)
T PLN00113 74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS 153 (968)
T ss_pred EEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccc
Confidence 57899999999999999999999999999999988887654 99999999999999875 6889999999999999
Q ss_pred CccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHH
Q 008024 75 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 154 (580)
Q Consensus 75 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 154 (580)
+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+
T Consensus 154 ~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 154 GEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred ccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 8888775 779999999999999998899999999999999999999998899999999999999999999998999999
Q ss_pred hhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCC
Q 008024 155 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV 233 (580)
Q Consensus 155 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 233 (580)
+.+++ |++|++++|.+.+.+|..++++++|++|++++|.+.+..+..+ .+++|++|++++|.+.+.+|..+..+++|+
T Consensus 233 ~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 233 GGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred hcCCC-CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 99887 9999999999998899999999999999999999987766555 788999999999999888888888899999
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccc--cCCc
Q 008024 234 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG--SDDV 311 (580)
Q Consensus 234 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~--~~~~ 311 (580)
.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+..+... ..+.
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 99999999998888888899999999999999988888888889999999999999988888877665544332 1222
Q ss_pred ccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhc---------------cccchhheeeccccceee-cc
Q 008024 312 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA---------------IDERVEIEFAMKNRYEIY-NG 375 (580)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~-~~ 375 (580)
+.+................+..+.........+..+..+..... ......+.+..+...... ..
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 22211110000000000001111000000000000000000000 000000111111100000 11
Q ss_pred cccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCe
Q 008024 376 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI 455 (580)
Q Consensus 376 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 455 (580)
...++|+.||+++|++++.+|..+..+++|+.|+|++|++++.+|..+..+++|++|+|++|++++.+|..+..+++|+.
T Consensus 472 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 22468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCcCCcccccCCCC-CcccccCCcccCCCcCCCCcc
Q 008024 456 FNVSYNNLSGRTPDK-GQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 456 L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gN~~lc~~~ 491 (580)
|++++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999974 556677788889999776444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-41 Score=326.36 Aligned_cols=378 Identities=23% Similarity=0.284 Sum_probs=238.9
Q ss_pred CCCCCCCCCCchhhccCCC--CCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCCCCcEEEccccc
Q 008024 1 MNLERNFIGSPLITCLKNL--TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNY 72 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~ 72 (580)
||.+++.+..+.-..+..+ ..-+.||+++|++....+..|.++++|+++++.+|.++. ...+|+.|+|.+|.
T Consensus 57 ldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~ 136 (873)
T KOG4194|consen 57 LDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL 136 (873)
T ss_pred eecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc
Confidence 3555666655444444432 345568888888887777778888888888888887663 44557777777777
Q ss_pred ccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChh
Q 008024 73 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPH 152 (580)
Q Consensus 73 ~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 152 (580)
|+ .+...-++.++.|+.||||.|.|+...-..|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++ .+|.
T Consensus 137 I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~ 214 (873)
T KOG4194|consen 137 IS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQ 214 (873)
T ss_pred cc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCH
Confidence 76 455555566677777777777776555556666666777777777777666666666777777777777776 4444
Q ss_pred HHh-hccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCC
Q 008024 153 WMG-NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC 230 (580)
Q Consensus 153 ~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~ 230 (580)
..+ .++. |+.|+|..|+|.-.--..|.++++|+.|.+..|.+.......| .+.++++|+|..|+++..-.+++.+++
T Consensus 215 r~Fk~L~~-L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 215 RSFKRLPK-LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHhhhcch-hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 333 3655 7777777776663334456666677777777776665555544 666666666666666665556666666
Q ss_pred CCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCC
Q 008024 231 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD 310 (580)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 310 (580)
.|+.|++++|.|..+-++.+..+++|+.|+|++|+++...+..|..+..|++|+|++|.++..-...|
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af------------ 361 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF------------ 361 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH------------
Confidence 66666666666666666666666666666666666666666666666666666666666642111111
Q ss_pred cccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCc
Q 008024 311 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ 390 (580)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 390 (580)
..+++|++|||++|.
T Consensus 362 -----------------------------------------------------------------~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 362 -----------------------------------------------------------------VGLSSLHKLDLRSNE 376 (873)
T ss_pred -----------------------------------------------------------------HHhhhhhhhcCcCCe
Confidence 234456666666666
Q ss_pred CcccCC---hhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCc
Q 008024 391 LTGEIP---SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 459 (580)
Q Consensus 391 l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 459 (580)
++..+- ..|..|++|+.|.|.+|++......+|.++.+||+|||.+|.|..+-|.+|..+ .|+.|.+.
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 654332 235556666666666666664444556666666666666666666666666666 55555443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-39 Score=317.30 Aligned_cols=361 Identities=23% Similarity=0.279 Sum_probs=322.2
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
||+++|++..+-+..|.++++|+.+.+..|.++ .+|.......+|+.|+|.+|.|+. .++.|+.||||.|.+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 689999999999999999999999999999999 788866677789999999999886 678999999999999
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhH
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 153 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 153 (580)
+ .+|..-|..-.++++|+|++|.|+......|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|.+.-.--..
T Consensus 162 s-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 162 S-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred h-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 9 888877777789999999999999988899999999999999999999777788888999999999999998433566
Q ss_pred HhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCC
Q 008024 154 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 232 (580)
Q Consensus 154 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 232 (580)
|..+++ |+.|.+..|.+.......|..+.++++|+|+.|+++....... +++.|+.|+++.|.|..+-++.+.-+++|
T Consensus 241 FqgL~S-l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 241 FQGLPS-LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hcCchh-hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 778888 9999999999998777889999999999999999987666554 99999999999999999889999999999
Q ss_pred CEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcc
Q 008024 233 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL 312 (580)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 312 (580)
+.|+|+.|+|+...+..|..+..|++|.|+.|.+...-...|..+++|++|||++|.+++.+.+.-.
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~------------- 386 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV------------- 386 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh-------------
Confidence 9999999999988888999999999999999999877777899999999999999999866544210
Q ss_pred cccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCc
Q 008024 313 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 392 (580)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 392 (580)
....+++|+.|+|.+|++.
T Consensus 387 -------------------------------------------------------------~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 387 -------------------------------------------------------------AFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred -------------------------------------------------------------hhccchhhhheeecCceee
Confidence 0134788999999999999
Q ss_pred ccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCee
Q 008024 393 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 439 (580)
Q Consensus 393 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 439 (580)
......|.++.+|++|||.+|.|....|++|..| .|+.|.+..-.+
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 6666789999999999999999998999999999 999998764433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-39 Score=304.93 Aligned_cols=442 Identities=26% Similarity=0.395 Sum_probs=333.3
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCCCCcEEEccccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNYFS 74 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~~~ 74 (580)
|.+++|.+.. ..+.+.++..|++|++++|++. ..|.+++.+..++.++.++|+++. .+.+|+.+++++|.+.
T Consensus 50 lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 50 LILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee
Confidence 4577787777 4556778888999999999888 778888888899999999998774 6778899999999988
Q ss_pred CccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHH
Q 008024 75 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 154 (580)
Q Consensus 75 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 154 (580)
.+|++++ .+-.|+.++..+|+++ ..|+.+.++.+|..+++.+|+++...|+. -.++.|++||...|.+. .+|+.+
T Consensus 128 -el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~-i~m~~L~~ld~~~N~L~-tlP~~l 202 (565)
T KOG0472|consen 128 -ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENH-IAMKRLKHLDCNSNLLE-TLPPEL 202 (565)
T ss_pred -ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHH-HHHHHHHhcccchhhhh-cCChhh
Confidence 7777764 5788999999999988 56778888889999999999998544444 44999999999999887 899999
Q ss_pred hhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCC
Q 008024 155 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV 233 (580)
Q Consensus 155 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 233 (580)
+.+.+ |+.|++..|++. ..| .|.+|..|+.+.++.|++.-.+.... +++++..||++.|+++ ..|+.+..+.+|+
T Consensus 203 g~l~~-L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~ 278 (565)
T KOG0472|consen 203 GGLES-LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLE 278 (565)
T ss_pred cchhh-hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhh
Confidence 98887 999999999998 667 78899999999999998886665555 7899999999999998 6788888888999
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcCCCcCCCC--------------------------------------Chh---
Q 008024 234 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP--------------------------------------IPD--- 272 (580)
Q Consensus 234 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--------------------------------------~~~--- 272 (580)
.||+++|.|+ .+|..++++ .|+.|-+.||.+... .+.
T Consensus 279 rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 279 RLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred hhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 9999999998 678888988 899999999976310 000
Q ss_pred hhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhh
Q 008024 273 QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK 352 (580)
Q Consensus 273 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (580)
....+.+.+.|++++-+++ .+|........-.....-.+.+ ++...+|..........
T Consensus 357 ~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vnfsk-------------------NqL~elPk~L~~lkelv-- 414 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSK-------------------NQLCELPKRLVELKELV-- 414 (565)
T ss_pred chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEeccc-------------------chHhhhhhhhHHHHHHH--
Confidence 1123346677788777777 4554332221100000000000 00001111100000000
Q ss_pred hhccccchhheeecccc--ceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCC
Q 008024 353 RAAIDERVEIEFAMKNR--YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 430 (580)
Q Consensus 353 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 430 (580)
+.....++. +.......+++|+.|+|++|-+. .+|.+++.+..|+.||+|+|++. .+|..+..+..||
T Consensus 415 --------T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 415 --------TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLE 484 (565)
T ss_pred --------HHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHH
Confidence 000000000 00111245788999999999998 89999999999999999999998 8999999999999
Q ss_pred eEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccccCCcccCCCcCC
Q 008024 431 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSL 487 (580)
Q Consensus 431 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gN~~l 487 (580)
++-.++|++....|+.+.+|.+|++||+.+|.+...+|..+....+....+.|||.-
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999999999977777799999999999999999988888899999999999999964
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.1e-38 Score=292.24 Aligned_cols=368 Identities=30% Similarity=0.455 Sum_probs=218.4
Q ss_pred CCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCCCCcEEEcccccccCc
Q 008024 3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNYFSGG 76 (580)
Q Consensus 3 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~~~~~ 76 (580)
.++|++.. +|+.+..+.+|+.++.++|.+. ..|+.++.+-.|+.++..+|+++. .+.+|..+++.+|.++ .
T Consensus 98 vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~ 174 (565)
T KOG0472|consen 98 VSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-A 174 (565)
T ss_pred cccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-h
Confidence 33444433 3333444444444444444444 334444444444444444444442 3344444455555444 3
Q ss_pred cchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHh-
Q 008024 77 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG- 155 (580)
Q Consensus 77 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~- 155 (580)
.|+.... ++.|++||...|.++ .+|+.++.+.+|..|++..|++. ..| .|.++..|++|+++.|.+. .+|...+
T Consensus 175 l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~ 249 (565)
T KOG0472|consen 175 LPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLK 249 (565)
T ss_pred CCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhc
Confidence 3333322 445555555555544 44555555555555555555554 344 3455555555555555554 4555444
Q ss_pred hccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccC-------------------
Q 008024 156 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKN------------------- 216 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n------------------- 216 (580)
.+++ +.+||+.+|+++ ..|+.+.-+++|.+||+|+|.+++.++...++ +|+.|-+.+|
T Consensus 250 ~L~~-l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNS-LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred cccc-ceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 3333 555555555555 45555555555555555555555554444444 4555555444
Q ss_pred ----------------------------------------------CCCCCCcccccCCCC---CCEEEcccCcccccCC
Q 008024 217 ----------------------------------------------ALNGLIPGELFRSCK---LVTLNLRDNTFSGRIP 247 (580)
Q Consensus 217 ----------------------------------------------~l~~~~~~~~~~~~~---L~~L~L~~n~l~~~~~ 247 (580)
+++ .+|+..+.... ....+++.|++. ++|
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elP 404 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELP 404 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhh
Confidence 333 22332222222 445555556555 455
Q ss_pred ccccCCCCccE-EEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchh
Q 008024 248 HQINEHSNLRF-LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEI 326 (580)
Q Consensus 248 ~~~~~~~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (580)
..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.
T Consensus 405 k~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~-------------------------- 456 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS-------------------------- 456 (565)
T ss_pred hhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhh--------------------------
Confidence 55544444433 33333333 366777777778888888777765 45554433
Q ss_pred ccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCC
Q 008024 327 EFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL 406 (580)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 406 (580)
+..|+.||+|.|+|. .+|..+..+..++
T Consensus 457 ---------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 457 ---------------------------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLE 484 (565)
T ss_pred ---------------------------------------------------hhhhheecccccccc-cchHHHhhHHHHH
Confidence 345788999999998 8999998888899
Q ss_pred eeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCccc
Q 008024 407 ALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 464 (580)
Q Consensus 407 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 464 (580)
.+-.++|++....|+.+.+|.+|.+|||.+|.+. .+|..+++|++|++|++++|++.
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9988999999666777999999999999999999 89999999999999999999997
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=2.3e-35 Score=289.73 Aligned_cols=359 Identities=25% Similarity=0.368 Sum_probs=192.3
Q ss_pred CCCCCCCC-CchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCCCCcEEEccccccc
Q 008024 2 NLERNFIG-SPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNYFS 74 (580)
Q Consensus 2 ~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~~~ 74 (580)
|+++|.++ +-.|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++.. .++.|+.+++..|++.
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK 91 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK 91 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc
Confidence 56677766 456677777777777777777766 677777777777777777776652 4555555555555553
Q ss_pred C-ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhH
Q 008024 75 G-GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 153 (580)
Q Consensus 75 ~-~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 153 (580)
. .+|..+|. +..|+.||||+|++. ..|..+..-+++-.|+|++|+|..+....+.+++.|-.||+|+|++. .+|..
T Consensus 92 nsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 92 NSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred cCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence 2 34555542 555555555555554 34455555555555555555555333334445555555555555554 45555
Q ss_pred HhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCC
Q 008024 154 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 233 (580)
Q Consensus 154 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 233 (580)
+..+.. |++|.|++|.+...--..+..+++|+.|.+++.+-+- .-+|.++..+.+|.
T Consensus 169 ~RRL~~-LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl----------------------~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 169 IRRLSM-LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL----------------------DNIPTSLDDLHNLR 225 (1255)
T ss_pred HHHHhh-hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh----------------------hcCCCchhhhhhhh
Confidence 555544 5555555555442222233334444444444433221 12344444444444
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCccc
Q 008024 234 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLN 313 (580)
Q Consensus 234 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~ 313 (580)
.+|++.|.+. ..|+.+-++++|+.|+|++|.++. +.-......+|+.|++|+|+++ .+|.+++.+
T Consensus 226 dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL------------ 290 (1255)
T KOG0444|consen 226 DVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKL------------ 290 (1255)
T ss_pred hccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhh------------
Confidence 4555554444 444444444455555555554442 2222333344555555555554 344433322
Q ss_pred ccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCc-
Q 008024 314 GSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT- 392 (580)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 392 (580)
++|+.|.+.+|+++
T Consensus 291 -----------------------------------------------------------------~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 291 -----------------------------------------------------------------TKLTKLYANNNKLTF 305 (1255)
T ss_pred -----------------------------------------------------------------HHHHHHHhccCcccc
Confidence 22333444444432
Q ss_pred ccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCC
Q 008024 393 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 393 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 469 (580)
.-+|..++.+.+|+++..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++.|++||+..|.=--.+|.
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 135666666666666666666665 66666666666666666666666 5666666666666666666654444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=1.2e-34 Score=284.59 Aligned_cols=371 Identities=26% Similarity=0.363 Sum_probs=312.6
Q ss_pred CCCCcCEEEccCCCCC-CCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccC
Q 008024 18 NLTRLKILDISSNQLN-GSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 96 (580)
Q Consensus 18 ~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n 96 (580)
-++-++-.|+++|.++ +..|.....+++++.|.|...++. .+|..+ +.+.+|++|.+++|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~------------------~vPeEL-~~lqkLEHLs~~HN 65 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE------------------QVPEEL-SRLQKLEHLSMAHN 65 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh------------------hChHHH-HHHhhhhhhhhhhh
Confidence 4566778899999988 568888888889998888888776 888887 67999999999999
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCC-ccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCcc
Q 008024 97 NFEGQFFSEYMNLTRLRHLYFENNNFS-GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV 175 (580)
Q Consensus 97 ~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 175 (580)
++. .+...+..++.|+.+.+.+|++. .-+|..+..+..|+.||+|+|+++ ..|..+..... +-.|+|++|+|..+.
T Consensus 66 ~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn-~iVLNLS~N~IetIP 142 (1255)
T KOG0444|consen 66 QLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKN-SIVLNLSYNNIETIP 142 (1255)
T ss_pred hhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcC-cEEEEcccCccccCC
Confidence 988 45567888999999999999986 346778889999999999999999 88998887776 899999999999544
Q ss_pred CccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccc-ccCCccccCCC
Q 008024 176 PVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS-GRIPHQINEHS 254 (580)
Q Consensus 176 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~ 254 (580)
...|.++..|-+||||+|++...+|..-.+..|++|+|++|.+.-.--..+..+++|++|.+++.+=+ ..+|.++..+.
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 45567899999999999999988888888999999999999876433344556778889999887644 46889999999
Q ss_pred CccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCC
Q 008024 255 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN 334 (580)
Q Consensus 255 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (580)
+|..+|++.|.+. ..|+.+..+++|+.|+||+|+++. +.-+.
T Consensus 223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~------------------------------------ 264 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTE------------------------------------ 264 (1255)
T ss_pred hhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccH------------------------------------
Confidence 9999999999998 899999999999999999999972 11110
Q ss_pred CCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCc
Q 008024 335 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNS 414 (580)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 414 (580)
+ .-.+|++|+||.|+++ .+|..+..++.|+.|.+.+|+
T Consensus 265 -------~----------------------------------~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 265 -------G----------------------------------EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred -------H----------------------------------HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 0 1135777999999999 899999999999999999999
Q ss_pred ccc-ccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccccCCcccCCCcCCCCcc
Q 008024 415 LSG-SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 415 l~~-~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~ 491 (580)
++- -+|..++++.+|+.+..++|.+. ..|+.+..+..|+.|.|++|+|...+...-.+..++...+..||.+--+|
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 863 47999999999999999999998 89999999999999999999997544444555667778899999988654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-32 Score=281.97 Aligned_cols=435 Identities=29% Similarity=0.353 Sum_probs=276.9
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCCCCcEEEccccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNYFS 74 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~~~ 74 (580)
|++++|.+-..+-+...+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+.. ++.+|+++.|..|.+.
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~ 104 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ 104 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh
Confidence 467777776655555555666999999999887 788888899999999999998774 7888999999998887
Q ss_pred CccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHH
Q 008024 75 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 154 (580)
Q Consensus 75 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 154 (580)
..|.++ ..+.+|++|++++|.+. .+|..+..++.++.+..++|.-... ++... ++.+++..|.+.+.++..+
T Consensus 105 -~lP~~~-~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 105 -SLPASI-SELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred -cCchhH-HhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcch
Confidence 778776 56888999999999886 5666677777777777776621111 12111 5566666666655555554
Q ss_pred hhccCCCcEEEeecCcCCCccCccCCCCC--------------------CCCEEEccCCCCCCccccCcCCCCccEEEcc
Q 008024 155 GNFSSELEILSMSKNHLEGNVPVQLNNLE--------------------RLRILDISENRLSGPIASSLNLSSVEHLSLQ 214 (580)
Q Consensus 155 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--------------------~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~ 214 (580)
..+.. .|++++|.+.. ..+..+. +|+.|+.++|.++ .....+...+|+.++++
T Consensus 177 ~~l~~---~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis 249 (1081)
T KOG0618|consen 177 YNLTH---QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDIS 249 (1081)
T ss_pred hhhhe---eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce-eeccccccccceeeecc
Confidence 44321 46666666541 1122333 4445555555444 22222234456666666
Q ss_pred cCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccC
Q 008024 215 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 294 (580)
Q Consensus 215 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (580)
+|++++ +|+++..+.+|+.++..+|.++ .+|..+....+|+.|....|.+. -+|....+++.|++|+|..|++. ..
T Consensus 250 ~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~l 325 (1081)
T KOG0618|consen 250 HNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SL 325 (1081)
T ss_pred hhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-cc
Confidence 666663 3466666666666666666664 55655666666666666666665 45555666677777777777765 44
Q ss_pred ChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccc---e
Q 008024 295 PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRY---E 371 (580)
Q Consensus 295 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~ 371 (580)
|+.+........ +.++. ..++....+...-.....+... +...+.. .
T Consensus 326 p~~~l~v~~~~l---~~ln~-----------------s~n~l~~lp~~~e~~~~~Lq~L----------ylanN~Ltd~c 375 (1081)
T KOG0618|consen 326 PDNFLAVLNASL---NTLNV-----------------SSNKLSTLPSYEENNHAALQEL----------YLANNHLTDSC 375 (1081)
T ss_pred chHHHhhhhHHH---HHHhh-----------------hhccccccccccchhhHHHHHH----------HHhcCcccccc
Confidence 443221111000 00000 0000000000000000111110 0011110 0
Q ss_pred eecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCC
Q 008024 372 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 451 (580)
Q Consensus 372 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 451 (580)
........+|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+..+..|++|...+|++. ..| .+..++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~ 452 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLP 452 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcC
Confidence 111245789999999999998444456789999999999999999 89999999999999999999999 677 889999
Q ss_pred cCCeeeCcCCccccc-CCCCCcccccCCcccCCCcCCC
Q 008024 452 FLSIFNVSYNNLSGR-TPDKGQFATFDESSYRGNPSLC 488 (580)
Q Consensus 452 ~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~gN~~lc 488 (580)
.|+++|+|.|+|+.. +|....-.+++...+.||+++-
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 999999999999864 3433333678888899999754
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=5e-31 Score=270.89 Aligned_cols=244 Identities=32% Similarity=0.454 Sum_probs=160.1
Q ss_pred CcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEc
Q 008024 134 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 213 (580)
Q Consensus 134 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L 213 (580)
.+|++++++.|+++ .+|++++.+.. |+.++..+|++. .+|..+....+|+.|++.+|.+...++.....+.|++|+|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~n-le~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACAN-LEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhccc-ceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 34555555555554 44455555544 555555555553 4444444455555555555555544444434555555555
Q ss_pred ccCCCCCCCcccccCCC-CCCEEEcccCcccccCCc-cccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCccc
Q 008024 214 QKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPH-QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 214 ~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
..|++....+..+.... .|..|+.+.|++. ..|. .=..++.|+.|++.+|.+++..-..+.+.++|+.|+|++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 55555532222222221 2444555555554 2221 1122567888999999999888888889999999999999986
Q ss_pred ccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccce
Q 008024 292 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 371 (580)
Q Consensus 292 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 371 (580)
.+|...-
T Consensus 397 -~fpas~~------------------------------------------------------------------------ 403 (1081)
T KOG0618|consen 397 -SFPASKL------------------------------------------------------------------------ 403 (1081)
T ss_pred -cCCHHHH------------------------------------------------------------------------
Confidence 4554321
Q ss_pred eecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeec-CccccccC
Q 008024 372 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ-IPPQLTAL 450 (580)
Q Consensus 372 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~-~p~~l~~l 450 (580)
..+..|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++.. +|.... .
T Consensus 404 ----~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~ 475 (1081)
T KOG0618|consen 404 ----RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-S 475 (1081)
T ss_pred ----hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-C
Confidence 23456788999999999 88999999999999999999998 778 799999999999999999854 343333 3
Q ss_pred CcCCeeeCcCCc
Q 008024 451 NFLSIFNVSYNN 462 (580)
Q Consensus 451 ~~L~~L~Ls~N~ 462 (580)
+.|++||+++|.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 789999999997
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.95 E-value=2.6e-30 Score=241.83 Aligned_cols=272 Identities=21% Similarity=0.219 Sum_probs=205.6
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEccc-CCCcccCCCCcEEEcccccccCccch
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH-NNFEGEMKELSLLDLSRNYFSGGLSQ 79 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~l~~L~~L~Ls~n~~~~~~~~ 79 (580)
++|..|+|+.+++.+|+.+++||.||||+|.|+.+.|++|.++++|..|-+.+ |+|+ .+|.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~------------------~l~k 133 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT------------------DLPK 133 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh------------------hhhh
Confidence 46888999999999999999999999999999988999999999888776665 7776 8999
Q ss_pred HHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCC-----------
Q 008024 80 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG----------- 148 (580)
Q Consensus 80 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~----------- 148 (580)
..|.++..|+.|.+.-|++.....+.|..+++|..|.+.+|.+...-...|..+..++.+.+..|.+..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 999999999999999999998888999999999999999999984444588999999999999887431
Q ss_pred -CChhHHhhccCCCcEEEeecCcCCCccCccCCCC-CCCCEEEccCCCCCCcccc-Cc-CCCCccEEEcccCCCCCCCcc
Q 008024 149 -HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL-ERLRILDISENRLSGPIAS-SL-NLSSVEHLSLQKNALNGLIPG 224 (580)
Q Consensus 149 -~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~~~ 224 (580)
..|..++.... ..-..+.+.++....+..|... ..+..=-.+.+...+..|. .+ .+++|++|++++|+++++-+.
T Consensus 214 a~~~ietsgarc-~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 214 AMNPIETSGARC-VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hhchhhccccee-cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 11111111111 2222333444443333333211 1111111122222223222 23 789999999999999988888
Q ss_pred cccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCccc
Q 008024 225 ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
+|.....++.|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|..|++-.|++.
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 8988999999999999998666677888999999999999999888888999999999999888775
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.1e-24 Score=249.36 Aligned_cols=223 Identities=21% Similarity=0.251 Sum_probs=130.0
Q ss_pred CCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEec
Q 008024 62 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 141 (580)
Q Consensus 62 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 141 (580)
+|+.|++.++.+. .+|..+ ...+|++|++++|.+. .++..+..+++|+.|+|+++.....+|. +..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 3555555555544 555543 3566777777777665 3455566667777777766543334443 566677777777
Q ss_pred ccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCC
Q 008024 142 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 221 (580)
Q Consensus 142 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 221 (580)
++|.....+|..+..++. |+.|++++|..-..+|..+ ++++|+.|++++|......+.. ..+|+.|++++|.++ .
T Consensus 665 ~~c~~L~~lp~si~~L~~-L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNK-LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-E 739 (1153)
T ss_pred cCCCCccccchhhhccCC-CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-c
Confidence 766554566666666665 7777777654333555544 5667777777766543333322 356677777777665 3
Q ss_pred CcccccCCCCCCEEEcccCccc-------ccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccC
Q 008024 222 IPGELFRSCKLVTLNLRDNTFS-------GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 294 (580)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (580)
+|..+ .+++|+.|++.++... ...+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+
T Consensus 740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 34333 4556666666553321 111112223456777777777666667777777777777777766543344
Q ss_pred C
Q 008024 295 P 295 (580)
Q Consensus 295 p 295 (580)
|
T Consensus 819 P 819 (1153)
T PLN03210 819 P 819 (1153)
T ss_pred C
Confidence 4
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.4e-23 Score=240.14 Aligned_cols=347 Identities=19% Similarity=0.210 Sum_probs=255.0
Q ss_pred CcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEE
Q 008024 37 PSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 116 (580)
Q Consensus 37 ~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 116 (580)
+.+|.++++|+.|.+..+.... .+.+...+|..+..-..+|+.|++.++.+. .+|..| ...+|++|+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~-----------~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~ 617 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQ-----------KKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQ 617 (1153)
T ss_pred HHHHhcCccccEEEEecccccc-----------cccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEE
Confidence 4456667777777665543321 112222456555332347999999999887 566666 578999999
Q ss_pred ccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCC
Q 008024 117 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 196 (580)
Q Consensus 117 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 196 (580)
+.+|++. .++..+..+++|+.|+++++.....+|. +..++. |++|++++|.....+|..+.++++|+.|++++|...
T Consensus 618 L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 618 MQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred CcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 9999998 6788889999999999998865557774 666666 999999998776789999999999999999998655
Q ss_pred CccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCC-------CC
Q 008024 197 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ-------GP 269 (580)
Q Consensus 197 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-------~~ 269 (580)
...+...++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++... ..
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhcccccccc
Confidence 55665558999999999999766555543 358999999999987 677655 5788999988774321 12
Q ss_pred ChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhh
Q 008024 270 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 349 (580)
Q Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (580)
.+......++|+.|++++|...+.+|..+++++.+....... +.
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~----------------------C~-------------- 813 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN----------------------CI-------------- 813 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC----------------------CC--------------
Confidence 222334457899999999988888998888776554321100 00
Q ss_pred hhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccC
Q 008024 350 LEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMI 429 (580)
Q Consensus 350 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 429 (580)
..........+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|
T Consensus 814 ------------------~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L 871 (1153)
T PLN03210 814 ------------------NLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNL 871 (1153)
T ss_pred ------------------CcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence 0000000123678899999998655566653 367899999999998 789999999999
Q ss_pred CeEeCCCCeeeecCccccccCCcCCeeeCcCCc
Q 008024 430 ESLDISYNKLTGQIPPQLTALNFLSIFNVSYNN 462 (580)
Q Consensus 430 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 462 (580)
+.|+|++|+--..+|..+..++.|+.+++++|.
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999854444688888899999999999885
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=8.4e-23 Score=217.28 Aligned_cols=194 Identities=25% Similarity=0.303 Sum_probs=100.8
Q ss_pred CCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEec
Q 008024 62 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 141 (580)
Q Consensus 62 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 141 (580)
+-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 3456666666666 5666542 356677777776663 332 2456666677666666 33432 346666666
Q ss_pred ccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCC
Q 008024 142 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 221 (580)
Q Consensus 142 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 221 (580)
++|.++ .+|. .+.+|+.|++++|+++ .+|.. .++|+.|++++|++++.+. . ..+|+.|++++|.+++
T Consensus 270 s~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPA-L--PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchh-hhhh----chhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCC-C--cccccccccccCcccc-
Confidence 666665 3443 2223666666666665 33332 2456666666666654322 1 2345555555555553
Q ss_pred CcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCccc
Q 008024 222 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc
Confidence 2321 124555555555555 23322 234455555555554 23332 134555555555544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-25 Score=210.83 Aligned_cols=355 Identities=20% Similarity=0.238 Sum_probs=209.1
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccC-CcCCccccccccCCCcccEEecccCcCCCCChhHH
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN-NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 154 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 154 (580)
.+|+..|+.+++|+.||||+|.|+.+.|++|.++++|.+|.+.+ |+|+....+.|.++.+|+.|.+.-|++.-.....+
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 56666666666666666666666666666666666666555544 66665444566666666666666666664444555
Q ss_pred hhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCC------------------------------------CCc
Q 008024 155 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------------------SGP 198 (580)
Q Consensus 155 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l------------------------------------~~~ 198 (580)
..++. +..|.+.+|.+.......|..+..++.+.+..|.+ ...
T Consensus 161 ~dL~~-l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 161 RDLPS-LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQE 239 (498)
T ss_pred HHhhh-cchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhccc
Confidence 55555 66666666666533233555566666665555542 111
Q ss_pred cccCcCCCCccEE---EcccCCCCCCCc-ccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhh
Q 008024 199 IASSLNLSSVEHL---SLQKNALNGLIP-GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 274 (580)
Q Consensus 199 ~~~~~~l~~L~~L---~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 274 (580)
.+..+. ..++.+ -.+.+...+..| ..|..+++|++|+|++|+++++-+.+|.+...++.|.|..|++...-...|
T Consensus 240 ~a~kf~-c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f 318 (498)
T KOG4237|consen 240 DARKFL-CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMF 318 (498)
T ss_pred chhhhh-hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhh
Confidence 111111 112222 112222223333 457889999999999999999999999999999999999999987777789
Q ss_pred cCCCCCCEEECcCCcccccCChhhhccccccccc--CCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhh
Q 008024 275 CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGS--DDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK 352 (580)
Q Consensus 275 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (580)
.++..|+.|+|.+|+|+...|..|..+.++.... .|.+...- .+ . -...|+..-..
T Consensus 319 ~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC----~l----~--------------wl~~Wlr~~~~ 376 (498)
T KOG4237|consen 319 QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC----RL----A--------------WLGEWLRKKSV 376 (498)
T ss_pred hccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc----ch----H--------------HHHHHHhhCCC
Confidence 9999999999999999988888887665443310 11110000 00 0 00011111100
Q ss_pred hhcccc-------chhheeeccccc--------eeecc----ccccccc-EEEccCCcCcccCChhhhccccCCeeeCcC
Q 008024 353 RAAIDE-------RVEIEFAMKNRY--------EIYNG----SNVNRVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSN 412 (580)
Q Consensus 353 ~~~~~~-------~~~~~~~~~~~~--------~~~~~----~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 412 (580)
.+.... ++++.....+.. ..... ..++-+. +...|+..+. .+|..+. ..-++|++.+
T Consensus 377 ~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~g 453 (498)
T KOG4237|consen 377 VGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDG 453 (498)
T ss_pred CCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhccc
Confidence 000000 000000000000 00000 1122222 2344555444 4444332 2356789999
Q ss_pred CccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCC
Q 008024 413 NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 461 (580)
Q Consensus 413 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 461 (580)
|.++ .+|.. .+.+| .+|+|+|+++..--..|.+++.|.+|-+|+|
T Consensus 454 n~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 454 NAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 9998 77876 66788 8999999999766778899999999999887
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=2.3e-22 Score=213.97 Aligned_cols=261 Identities=25% Similarity=0.283 Sum_probs=210.1
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc---cCCCCcEEEcccccccCcc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG---EMKELSLLDLSRNYFSGGL 77 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~l~~L~~L~Ls~n~~~~~~ 77 (580)
|+|+.|.++. +|.++. ++|+.|++++|+++ .+|. ..++|++|++++|+++. ..++|++|++++|.++ .+
T Consensus 206 LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~-~L 277 (788)
T PRK15387 206 LNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT-HL 277 (788)
T ss_pred EEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCcccccceeeccCCchh-hh
Confidence 5789999996 666665 48999999999999 4664 35899999999999885 4578999999999988 56
Q ss_pred chHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhc
Q 008024 78 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 157 (580)
Q Consensus 78 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 157 (580)
|.. ..+|+.|++++|+++. +|. ..++|++|++++|++++ +|.. ..+|+.|++++|.++ .+|. +
T Consensus 278 p~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~----l 340 (788)
T PRK15387 278 PAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT----L 340 (788)
T ss_pred hhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc----c
Confidence 652 3578999999999984 444 25789999999999984 4543 346889999999998 5664 3
Q ss_pred cCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEc
Q 008024 158 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 237 (580)
Q Consensus 158 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 237 (580)
+.+|+.|++++|++++ +|.. ..+|+.|++++|.++..+. . ..+|+.|++++|.+++ +|.. .++|+.|++
T Consensus 341 p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~-l--~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL 409 (788)
T PRK15387 341 PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA-L--PSGLKELIVSGNRLTS-LPVL---PSELKELMV 409 (788)
T ss_pred ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc-c--ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence 4459999999999994 5543 3578899999999986432 2 3679999999999985 4543 357999999
Q ss_pred ccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhccc
Q 008024 238 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVL 302 (580)
Q Consensus 238 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 302 (580)
++|+++ .+|.. ..+|+.|++++|+++ .+|..++.+++|+.|++++|++++..+..+..+.
T Consensus 410 S~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 410 SGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred cCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 999998 46754 357889999999998 7899999999999999999999998888775554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.5e-20 Score=201.57 Aligned_cols=180 Identities=24% Similarity=0.413 Sum_probs=82.2
Q ss_pred CcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecc
Q 008024 63 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 142 (580)
Q Consensus 63 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 142 (580)
.+.|+++++.++ .+|..+ .++|+.|++++|.++. +|..+. ++|++|++++|+++ .+|..+. .+|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 445555555554 344433 1345555555555552 233222 34555555555554 3333322 245555555
Q ss_pred cCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCC
Q 008024 143 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 222 (580)
Q Consensus 143 ~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~ 222 (580)
+|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++..
T Consensus 250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L------------------------ 298 (754)
T PRK15370 250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL------------------------ 298 (754)
T ss_pred CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC------------------------
Confidence 55554 4444332 12555555555554 2333332 2444444444444432
Q ss_pred cccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCccc
Q 008024 223 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++
T Consensus 299 P~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 299 PAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred cccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 22221 24555555555554 233322 2355555555555552 444332 45666666666554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=1.6e-20 Score=201.23 Aligned_cols=230 Identities=22% Similarity=0.365 Sum_probs=137.0
Q ss_pred CCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCC
Q 008024 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 99 (580)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~ 99 (580)
.+.+.|++++++++ .+|..+. ++|+.|+|++|+++ .+|..++ .+|++|++++|.++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt------------------sLP~~l~---~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK------------------SLPENLQ---GNIKTLYANSNQLT 233 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC------------------cCChhhc---cCCCEEECCCCccc
Confidence 35678888888887 4565443 46777777777666 4555442 36667777777666
Q ss_pred CcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccC
Q 008024 100 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL 179 (580)
Q Consensus 100 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 179 (580)
. +|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|++++ +|..+
T Consensus 234 s-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l 302 (754)
T PRK15370 234 S-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHL 302 (754)
T ss_pred c-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccc
Confidence 3 344332 35677777777766 4555443 46777777777776 4565432 237777777777763 44433
Q ss_pred CCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEE
Q 008024 180 NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 259 (580)
Q Consensus 180 ~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 259 (580)
. ++|+.|++++|.++..+... .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|
T Consensus 303 p--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~L 372 (754)
T PRK15370 303 P--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTL 372 (754)
T ss_pred h--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEE
Confidence 2 35666777777666433222 2466666677666664 344332 46777777777766 345443 2466777
Q ss_pred EcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhh
Q 008024 260 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 298 (580)
Q Consensus 260 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 298 (580)
++++|.++ .+|..+. ..|+.|++++|+++ .+|..+
T Consensus 373 dLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 373 DVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred ECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 77777766 3444443 25666677777665 444433
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=2.5e-20 Score=185.92 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=47.0
Q ss_pred cccccEEEccCCcCcccCChhhhc-----cccCCeeeCcCCcccc----ccchhhhCcccCCeEeCCCCeeeec----Cc
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIGQ-----LQAILALNLSNNSLSG----SIPESFSNLKMIESLDISYNKLTGQ----IP 444 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~LdLs~N~l~~~----~p 444 (580)
+++|+.|++++|.+++.....+.. .+.|+.|++++|.++. .+...+..+++|+.+|+++|.++.. ..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 355666666666665432222221 2566777777776651 2334455556677777777777643 33
Q ss_pred cccccC-CcCCeeeCcCCc
Q 008024 445 PQLTAL-NFLSIFNVSYNN 462 (580)
Q Consensus 445 ~~l~~l-~~L~~L~Ls~N~ 462 (580)
..+... +.|+.+++.+|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 300 ESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhhcCCchhhcccCCCC
Confidence 333333 456666666664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=8.9e-20 Score=181.97 Aligned_cols=276 Identities=25% Similarity=0.296 Sum_probs=149.1
Q ss_pred CCCCCCCCC-CchhhccCCCCCcCEEEccCCCCCCC----CCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccC
Q 008024 1 MNLERNFIG-SPLITCLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSG 75 (580)
Q Consensus 1 L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~ 75 (580)
|+|.++.++ ......+..+.+|++|+++++.++.. ++..+...++|++++++++.+.+. ...+ .
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~----------~~~~-~ 71 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI----------PRGL-Q 71 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc----------chHH-H
Confidence 567777777 34556666777788888888877532 444556677777777777765510 0000 0
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCC---CCEEEccCCcCCc----cccccccCC-CcccEEecccCcCC
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTR---LRHLYFENNNFSG----KIKDGLLSS-TSLQVLDISNNMLS 147 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~ 147 (580)
.++. .+..+++|++|++++|.+....+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.++
T Consensus 72 ~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 72 SLLQ-GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHH-HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 1111 2334556666666666655444444433333 6666666666552 122333444 56666666666665
Q ss_pred CCC----hhHHhhccCCCcEEEeecCcCCCc----cCccCCCCCCCCEEEccCCCCCCccccC----c-CCCCccEEEcc
Q 008024 148 GHI----PHWMGNFSSELEILSMSKNHLEGN----VPVQLNNLERLRILDISENRLSGPIASS----L-NLSSVEHLSLQ 214 (580)
Q Consensus 148 ~~~----p~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~----~-~l~~L~~L~L~ 214 (580)
+.. +..+..+.. |++|++++|.+++. ++..+..+++|+.|++++|.+.+..... + .+++|++|+++
T Consensus 151 ~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 151 GASCEALAKALRANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred chHHHHHHHHHHhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 322 222333333 66666666666531 2223344456666666666655332111 1 45666666666
Q ss_pred cCCCCCCCccccc-----CCCCCCEEEcccCcccc----cCCccccCCCCccEEEcCCCcCCCC----ChhhhcCC-CCC
Q 008024 215 KNALNGLIPGELF-----RSCKLVTLNLRDNTFSG----RIPHQINEHSNLRFLLLGGNHLQGP----IPDQLCQL-QKL 280 (580)
Q Consensus 215 ~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l-~~L 280 (580)
+|.+++.....+. ..+.|+.|++++|.++. .+...+..+++|+++++++|.++.. ....+... +.|
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~ 309 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL 309 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch
Confidence 6666542222221 12567777777777652 2233444556777777777777643 22333333 567
Q ss_pred CEEECcCCc
Q 008024 281 AMMDLSRNK 289 (580)
Q Consensus 281 ~~L~Ls~N~ 289 (580)
+.+++.+|+
T Consensus 310 ~~~~~~~~~ 318 (319)
T cd00116 310 ESLWVKDDS 318 (319)
T ss_pred hhcccCCCC
Confidence 777777665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=4.9e-20 Score=153.75 Aligned_cols=89 Identities=28% Similarity=0.502 Sum_probs=66.9
Q ss_pred ccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCC
Q 008024 200 ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 279 (580)
Q Consensus 200 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 279 (580)
+..+.+.+++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 34446677777778888877 55667777778888888888887 67777777888888888877776 67777777788
Q ss_pred CCEEECcCCccc
Q 008024 280 LAMMDLSRNKFS 291 (580)
Q Consensus 280 L~~L~Ls~N~l~ 291 (580)
|+.||+++|++.
T Consensus 104 levldltynnl~ 115 (264)
T KOG0617|consen 104 LEVLDLTYNNLN 115 (264)
T ss_pred hhhhhccccccc
Confidence 888887777765
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.8e-18 Score=143.29 Aligned_cols=166 Identities=27% Similarity=0.536 Sum_probs=105.8
Q ss_pred ccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCC
Q 008024 106 YMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 185 (580)
Q Consensus 106 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 185 (580)
+.++...+.|.+++|+++ .+|..++.+.+|+.|++++|++. .+|..+..++. |+.|+++-|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~k-lr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPK-LRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchh-hhheecchhhhh-cCccccCCCchh
Confidence 445667777888888887 66777788888888888888887 77888888877 888888888877 778888888888
Q ss_pred CEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCc
Q 008024 186 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 265 (580)
Q Consensus 186 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 265 (580)
+.||+++|++... ..|..|+.+..|+.|+|++|.+. .+|..++++++|+.|.++.|.
T Consensus 105 evldltynnl~e~----------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 105 EVLDLTYNNLNEN----------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhhccccccccc----------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 8888888776531 23334444444444444554444 444444555555555555554
Q ss_pred CCCCChhhhcCCCCCCEEECcCCcccccCChhhhc
Q 008024 266 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 300 (580)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 300 (580)
+. ..|..++.++.|++|++.+|+++ .+|+.+++
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 44 34444555555555555555554 44444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.65 E-value=2.9e-16 Score=168.22 Aligned_cols=117 Identities=37% Similarity=0.609 Sum_probs=104.9
Q ss_pred cccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCc
Q 008024 380 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 459 (580)
Q Consensus 380 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 459 (580)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC--CcccccCCcccCCCcCCCCccccCCC
Q 008024 460 YNNLSGRTPDK--GQFATFDESSYRGNPSLCAWLIQQKY 496 (580)
Q Consensus 460 ~N~l~~~~p~~--~~~~~~~~~~~~gN~~lc~~~l~~~~ 496 (580)
+|+++|.+|.. ..+..+....+.||+++|+.+....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999974 22334456678999999986544444
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=2.5e-14 Score=141.23 Aligned_cols=171 Identities=30% Similarity=0.508 Sum_probs=97.0
Q ss_pred ccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcC
Q 008024 208 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 287 (580)
Q Consensus 208 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 287 (580)
-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++++|+.|++. ..|..+|.|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 334455555554 44555555555556666666665 55555666666666666666665 4555555554 56666666
Q ss_pred CcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeecc
Q 008024 288 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 367 (580)
Q Consensus 288 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (580)
|+++ .+|+.++
T Consensus 153 Nkl~-~lp~~ig-------------------------------------------------------------------- 163 (722)
T KOG0532|consen 153 NKLT-SLPEEIG-------------------------------------------------------------------- 163 (722)
T ss_pred Cccc-cCCcccc--------------------------------------------------------------------
Confidence 6654 3443322
Q ss_pred ccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCcccc
Q 008024 368 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQL 447 (580)
Q Consensus 368 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l 447 (580)
...+|..||.+.|.+. .+|..++.+.+|+.|++..|++. ..|..+..| .|..||+|.|+++ .+|-.|
T Consensus 164 ---------~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 164 ---------LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred ---------cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhh
Confidence 1133444666666665 55556666666666666666665 455555543 3556666666666 566666
Q ss_pred ccCCcCCeeeCcCCccc
Q 008024 448 TALNFLSIFNVSYNNLS 464 (580)
Q Consensus 448 ~~l~~L~~L~Ls~N~l~ 464 (580)
..|..|++|-|.+|+|+
T Consensus 231 r~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhheeeeeccCCCC
Confidence 66666666666666664
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.35 E-value=1.7e-12 Score=133.29 Aligned_cols=199 Identities=35% Similarity=0.495 Sum_probs=142.0
Q ss_pred EEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCC-CCCEEEcccCcccccCCccccCCCCccEEEcCCCc
Q 008024 187 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 265 (580)
Q Consensus 187 ~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 265 (580)
.++++.+.+..........+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 566777666544444445677788888888777 3444455553 7888888888887 555667788888888888888
Q ss_pred CCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhh
Q 008024 266 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR 345 (580)
Q Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (580)
+. .+|......+.|+.|++++|++. .+|....
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~---------------------------------------------- 206 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE---------------------------------------------- 206 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhh----------------------------------------------
Confidence 87 56655557788888888888886 3343210
Q ss_pred hhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhC
Q 008024 346 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN 425 (580)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 425 (580)
.+..|++|++++|.+. ..+..+..+..+..|.+++|++. ..+..++.
T Consensus 207 -------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 207 -------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred -------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence 1234666778888544 56666778888888888888887 45777888
Q ss_pred cccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCC
Q 008024 426 LKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 470 (580)
Q Consensus 426 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 470 (580)
++++++|++++|+++ .++. +..+.+|+.|++++|.++..+|..
T Consensus 254 l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 254 LSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 888888888888888 4444 778888888888888888777663
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=5.7e-14 Score=138.73 Aligned_cols=193 Identities=28% Similarity=0.429 Sum_probs=153.1
Q ss_pred CCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEE
Q 008024 86 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILS 165 (580)
Q Consensus 86 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ 165 (580)
.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|+.||++.|+++ .+|..++.++ |+.|.
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEE
Confidence 34456677888876 56777777778888888888887 77888888888888888888888 7888888887 88899
Q ss_pred eecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccccc
Q 008024 166 MSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 245 (580)
Q Consensus 166 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (580)
+++|+++ .+|..++....|..||.+.|.+...++...++.+|+.|.++.|++. .+|..+..+ .|..||++.|+++ .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 9999888 6788888888888999999988877777778888888988888887 456666643 6888999999998 7
Q ss_pred CCccccCCCCccEEEcCCCcCCCCChhhhcCCCC---CCEEECcCC
Q 008024 246 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRN 288 (580)
Q Consensus 246 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~N 288 (580)
+|-.|.+++.|++|-|.+|.+. ..|..+|..-. .++|+..-+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 8888999999999999999987 56666654333 355666555
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=4.1e-12 Score=130.42 Aligned_cols=191 Identities=32% Similarity=0.437 Sum_probs=106.3
Q ss_pred EEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCC-CCcEEEcccccccCccchHHhcCCCCCcEEEcccC
Q 008024 24 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMK-ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 96 (580)
Q Consensus 24 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~-~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n 96 (580)
.++++.+.+. .....+..++.++.|++.+|.++. ..+ +|+.|++++|.+. .+|..+ ..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhh-hccccccccccCCc
Confidence 5788888775 233445666788888888888774 222 5666666666655 443222 44666666666666
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccC
Q 008024 97 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 176 (580)
Q Consensus 97 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~ 176 (580)
++. .++...+..+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.. +..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~-l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN-LSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc-ccccccCCceee-ecc
Confidence 665 23333335566666666666665 44444444445666666666433 34444555544 555555555554 224
Q ss_pred ccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCc
Q 008024 177 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 223 (580)
Q Consensus 177 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 223 (580)
..++.++++++|++++|.++.... .....+++.|++++|.+....+
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 445555556666666665554433 3345555555555555554433
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.29 E-value=1e-11 Score=133.36 Aligned_cols=91 Identities=32% Similarity=0.541 Sum_probs=82.9
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccC-CcCCee
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL-NFLSIF 456 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L 456 (580)
+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 4678889999999999999999999999999999999999999999999999999999999999999998764 467889
Q ss_pred eCcCCcccccCC
Q 008024 457 NVSYNNLSGRTP 468 (580)
Q Consensus 457 ~Ls~N~l~~~~p 468 (580)
++++|...+..|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999998655444
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.2e-12 Score=125.60 Aligned_cols=209 Identities=22% Similarity=0.227 Sum_probs=107.5
Q ss_pred CCCCCcCEEEccCCCCCCCCC--cccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcc
Q 008024 17 KNLTRLKILDISSNQLNGSLP--SVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 94 (580)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls 94 (580)
+++++|+.+.|.+..+. ..+ .....|++++.|||++|-+.. ...-..+...+++|+.|+++
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~n----------------w~~v~~i~eqLp~Le~LNls 180 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHN----------------WFPVLKIAEQLPSLENLNLS 180 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHh----------------HHHHHHHHHhcccchhcccc
Confidence 35667777777776655 222 245566677777777665552 01112334445555555555
Q ss_pred cCcCCCccccc-ccCCCCCCEEEccCCcCCcc-ccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCC
Q 008024 95 NNNFEGQFFSE-YMNLTRLRHLYFENNNFSGK-IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 172 (580)
Q Consensus 95 ~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~ 172 (580)
.|.+....... -..++.|+.|.++.|.++.. +-..+..+++|+.|++..|.....-.... .....|+.|+|++|.+.
T Consensus 181 ~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 181 SNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLI 259 (505)
T ss_pred cccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh-hhhhHHhhccccCCccc
Confidence 55543211110 11345566666666665521 12233445666666666663111110111 11122666666666654
Q ss_pred CccC--ccCCCCCCCCEEEccCCCCCCccc-cC------cCCCCccEEEcccCCCCCC-CcccccCCCCCCEEEcccCcc
Q 008024 173 GNVP--VQLNNLERLRILDISENRLSGPIA-SS------LNLSSVEHLSLQKNALNGL-IPGELFRSCKLVTLNLRDNTF 242 (580)
Q Consensus 173 ~~~~--~~~~~l~~L~~L~ls~n~l~~~~~-~~------~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l 242 (580)
. .+ ...+.++.|..|+++.+.+..... +. ..+++|+.|++..|++... .-..+..+++|+.|.+..|.+
T Consensus 260 ~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 260 D-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred c-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 2 22 234566666777777666654221 11 1567778888887777421 112344556777777777777
Q ss_pred cc
Q 008024 243 SG 244 (580)
Q Consensus 243 ~~ 244 (580)
..
T Consensus 339 n~ 340 (505)
T KOG3207|consen 339 NK 340 (505)
T ss_pred cc
Confidence 63
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=2.1e-12 Score=120.72 Aligned_cols=239 Identities=23% Similarity=0.322 Sum_probs=147.9
Q ss_pred hccCCCCCcCEEEccCCCCCCC----CCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchH------Hhc
Q 008024 14 TCLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQS------VVT 83 (580)
Q Consensus 14 ~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~------~~~ 83 (580)
+.+..+..+++|+||+|.+... +.+.+.+.++|+..++++- ++| +....+|.. .+.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftG-------------R~~~Ei~e~L~~l~~aL~ 89 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTG-------------RLKDEIPEALKMLSKALL 89 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcC-------------CcHHHHHHHHHHHHHHHh
Confidence 3455677788888888877633 3344566677777777653 222 000122221 123
Q ss_pred CCCCCcEEEcccCcCCCccccc----ccCCCCCCEEEccCCcCCcc-------------ccccccCCCcccEEecccCcC
Q 008024 84 GCFSLELLDLSNNNFEGQFFSE----YMNLTRLRHLYFENNNFSGK-------------IKDGLLSSTSLQVLDISNNML 146 (580)
Q Consensus 84 ~l~~L~~L~ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~l 146 (580)
++++|++|+||+|.+....+.. +..+..|++|+|.+|.+... .......-+.|+++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4556666666666554333322 23456666666666665411 111233456788888888887
Q ss_pred CCCC----hhHHhhccCCCcEEEeecCcCCCc----cCccCCCCCCCCEEEccCCCCCCccccCc-----CCCCccEEEc
Q 008024 147 SGHI----PHWMGNFSSELEILSMSKNHLEGN----VPVQLNNLERLRILDISENRLSGPIASSL-----NLSSVEHLSL 213 (580)
Q Consensus 147 ~~~~----p~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-----~l~~L~~L~L 213 (580)
...- ...+...+. |+.+.+..|.|... ....+..+++|+.|||..|.++....... .+++|++|++
T Consensus 170 en~ga~~~A~~~~~~~~-leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPT-LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccc-cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 6322 233444544 88888888877532 23456788999999999998875433222 5678999999
Q ss_pred ccCCCCCCCcccc-----cCCCCCCEEEcccCccccc----CCccccCCCCccEEEcCCCcCC
Q 008024 214 QKNALNGLIPGEL-----FRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQ 267 (580)
Q Consensus 214 ~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~ 267 (580)
++|.+......++ ...++|+.|.+.+|.|+.. +...+...+.|+.|+|++|.+.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9998876544333 2357899999999998732 2334455789999999999994
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=3.9e-12 Score=119.02 Aligned_cols=232 Identities=22% Similarity=0.254 Sum_probs=157.0
Q ss_pred CCCCcEEEcccccccCccch---HHhcCCCCCcEEEcccC---cCCCccc-------ccccCCCCCCEEEccCCcCCccc
Q 008024 60 MKELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLDLSNN---NFEGQFF-------SEYMNLTRLRHLYFENNNFSGKI 126 (580)
Q Consensus 60 l~~L~~L~Ls~n~~~~~~~~---~~~~~l~~L~~L~ls~n---~i~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~ 126 (580)
+..+++++||+|.|...-.. ..+...++|+..++++- +....+| +.+...++|++|+|++|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 34444555555544322111 12344556666666642 1222233 34456789999999999987444
Q ss_pred cc----cccCCCcccEEecccCcCCCCChhHHh------------hccCCCcEEEeecCcCCCc----cCccCCCCCCCC
Q 008024 127 KD----GLLSSTSLQVLDISNNMLSGHIPHWMG------------NFSSELEILSMSKNHLEGN----VPVQLNNLERLR 186 (580)
Q Consensus 127 ~~----~l~~l~~L~~L~l~~n~l~~~~p~~~~------------~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~ 186 (580)
+. .+..+..|++|.|.+|.+.-.--..++ ..+..|+++..++|++... +...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 43 456789999999999988622111111 1233499999999998743 234466778999
Q ss_pred EEEccCCCCCCcccc-----CcCCCCccEEEcccCCCCCCC----cccccCCCCCCEEEcccCcccccCCccc-----cC
Q 008024 187 ILDISENRLSGPIAS-----SLNLSSVEHLSLQKNALNGLI----PGELFRSCKLVTLNLRDNTFSGRIPHQI-----NE 252 (580)
Q Consensus 187 ~L~ls~n~l~~~~~~-----~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~ 252 (580)
.+.++.|.+...... ...+++|+.|||.+|.++... ...+..+++|+.|++++|.+.......+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 999999988643331 127999999999999988542 3445667899999999999885544333 33
Q ss_pred CCCccEEEcCCCcCCCC----ChhhhcCCCCCCEEECcCCccc
Q 008024 253 HSNLRFLLLGGNHLQGP----IPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 253 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
.++|+.+.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 78999999999999742 2233455789999999999994
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=2e-11 Score=107.34 Aligned_cols=110 Identities=33% Similarity=0.420 Sum_probs=26.2
Q ss_pred cCCCCCcCEEEccCCCCCCCCCcccC-CCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcc
Q 008024 16 LKNLTRLKILDISSNQLNGSLPSVIS-NLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 94 (580)
Q Consensus 16 ~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls 94 (580)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|+|++|.|+. ++. +..++.|++|+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~------------------l~~--l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK------------------LEG--LPGLPRLKTLDLS 72 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--------------------TT------TT--EEE--
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc------------------ccC--ccChhhhhhcccC
Confidence 4455567888888888873 3 2354 56778888888887763 221 2334455555555
Q ss_pred cCcCCCcccccccCCCCCCEEEccCCcCCccc-cccccCCCcccEEecccCcCC
Q 008024 95 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKI-KDGLLSSTSLQVLDISNNMLS 147 (580)
Q Consensus 95 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 147 (580)
+|.|+...+.....+++|++|++++|+|.... -..+..+++|+.|++.+|+++
T Consensus 73 ~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 73 NNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55554322111123455555555555554211 123444555555555555554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.3e-11 Score=112.93 Aligned_cols=208 Identities=22% Similarity=0.271 Sum_probs=121.7
Q ss_pred CccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEccc-CcccccCCccccCCC
Q 008024 176 PVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD-NTFSGRIPHQINEHS 254 (580)
Q Consensus 176 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~ 254 (580)
|-.+.-+++|+.+.++.+.-..+......-|.|+++.+.+..+.. .| .+.....+....-.. .-..|..-..+....
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchHh
Confidence 333445566777777766543332222345666666666554431 11 111111111111110 001111112222335
Q ss_pred CccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCC
Q 008024 255 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN 334 (580)
Q Consensus 255 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (580)
.|+.+||++|.++ .+.++..-++.++.|++|+|.+.... ++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~-----nL--------------------------------- 325 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ-----NL--------------------------------- 325 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh-----hh---------------------------------
Confidence 6778888888877 56666666788888888888775210 00
Q ss_pred CCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCc
Q 008024 335 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNS 414 (580)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 414 (580)
..+++|+.||||+|.++ .+..+-..+-+.+.|+|+.|.
T Consensus 326 -----------------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 326 -----------------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred -----------------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence 23457777888888877 455555567778888888888
Q ss_pred cccccchhhhCcccCCeEeCCCCeeeec-CccccccCCcCCeeeCcCCcccccCC
Q 008024 415 LSGSIPESFSNLKMIESLDISYNKLTGQ-IPPQLTALNFLSIFNVSYNNLSGRTP 468 (580)
Q Consensus 415 l~~~~p~~~~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p 468 (580)
|. . -..++++-+|+.||+++|+|... --..+++++-|+++.|.+|++.+.+-
T Consensus 364 iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 364 IE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred Hh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 75 2 24477778888888888888632 23467788888888888888875443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.3e-11 Score=112.86 Aligned_cols=103 Identities=29% Similarity=0.399 Sum_probs=55.0
Q ss_pred CCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEe
Q 008024 87 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 166 (580)
Q Consensus 87 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l 166 (580)
.|+++|||+|.|+ .+.+++.-.|+++.|++++|.+... +.+..+++|+.||+++|.++ .+..+-.++.+ +++|.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN-IKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN-IKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC-Eeeeeh
Confidence 4666666666665 3444555556666666666666522 22555666666666666655 33333333433 566666
Q ss_pred ecCcCCCccCccCCCCCCCCEEEccCCCCC
Q 008024 167 SKNHLEGNVPVQLNNLERLRILDISENRLS 196 (580)
Q Consensus 167 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 196 (580)
+.|.+.. -..+..+.+|..||+++|++.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchh
Confidence 6665541 123444555555555555544
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1e-10 Score=102.81 Aligned_cols=124 Identities=31% Similarity=0.368 Sum_probs=52.4
Q ss_pred CcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccc-cCCCcccEEec
Q 008024 63 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL-LSSTSLQVLDI 141 (580)
Q Consensus 63 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l 141 (580)
+++|+|++|.|+ .+. .+-..+.+|+.|++++|.|+.. +.+..+++|++|++++|+|+. +.+.+ ..+++|++|++
T Consensus 21 ~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 21 LRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred cccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEEC
Confidence 334444444443 343 2323578999999999999853 468889999999999999984 44444 46899999999
Q ss_pred ccCcCCCCC-hhHHhhccCCCcEEEeecCcCCCccC---ccCCCCCCCCEEEccC
Q 008024 142 SNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVP---VQLNNLERLRILDISE 192 (580)
Q Consensus 142 ~~n~l~~~~-p~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ls~ 192 (580)
++|++...- -..+..++. |+.|++.+|.++...- ..+..+|+|+.||-..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~-L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPK-LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TTS---SCCCCGGGGG-TT---EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCcCCChHHhHHHHcCCC-cceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999997421 245667777 9999999999874311 2356789999998643
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.3e-11 Score=115.17 Aligned_cols=161 Identities=22% Similarity=0.211 Sum_probs=88.4
Q ss_pred cCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCc--ccccccCCCCCCEEEccCCcCCcccc-ccccCCCc
Q 008024 59 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ--FFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTS 135 (580)
Q Consensus 59 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~ 135 (580)
++++|+.+.|.++.............|++++.|||+.|-+... .......+++|+.|+++.|++..... ..-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 5566666666666654222224456778888888888866532 22234567788888888877752111 11124566
Q ss_pred ccEEecccCcCCCC-ChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCcc--ccCcCCCCccEEE
Q 008024 136 LQVLDISNNMLSGH-IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--ASSLNLSSVEHLS 212 (580)
Q Consensus 136 L~~L~l~~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~l~~L~~L~ 212 (580)
|+.|.++.|.++-. +-..+..+|. |+.|++..|.....-.....-+..|+.|||++|++.... +....++.|+.|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 77777777776521 1122233444 777777766422222222334556666666666655433 2222566666666
Q ss_pred cccCCCCC
Q 008024 213 LQKNALNG 220 (580)
Q Consensus 213 L~~n~l~~ 220 (580)
++.+.+..
T Consensus 278 ls~tgi~s 285 (505)
T KOG3207|consen 278 LSSTGIAS 285 (505)
T ss_pred ccccCcch
Confidence 66665553
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=3e-10 Score=82.10 Aligned_cols=60 Identities=43% Similarity=0.592 Sum_probs=33.0
Q ss_pred cCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcc
Q 008024 404 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 463 (580)
Q Consensus 404 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 463 (580)
+|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544444555555555555555555555555555555555555555543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=4.9e-10 Score=80.98 Aligned_cols=61 Identities=41% Similarity=0.576 Sum_probs=56.3
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCee
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 439 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 439 (580)
++|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999966667899999999999999999988888999999999999999985
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=1.7e-09 Score=118.92 Aligned_cols=59 Identities=25% Similarity=0.256 Sum_probs=37.6
Q ss_pred ccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccc-cchhhhCcccCCeEeCC
Q 008024 377 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS-IPESFSNLKMIESLDIS 435 (580)
Q Consensus 377 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs 435 (580)
..++|+.|.+..+.....+.+....+..+.++-+..+.+.+. .-...+.++++..+.++
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 357888888888876656666666677777766777766654 23445555555544443
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1.3e-10 Score=119.48 Aligned_cols=240 Identities=30% Similarity=0.302 Sum_probs=151.7
Q ss_pred CCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCCCCcEEEcccccccCccchHHhcCCCCCcEE
Q 008024 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL 91 (580)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L 91 (580)
.+..++.++++.|.+.. +-..+..+++|+.|++.+|.|.. .+++|++|++++|.|+. +.. +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LEG--LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc-ccc--hhhccchhhh
Confidence 45556666666666652 33345666777777777776654 46677777777777763 322 2446668888
Q ss_pred EcccCcCCCcccccccCCCCCCEEEccCCcCCcccc-ccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCc
Q 008024 92 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 170 (580)
Q Consensus 92 ~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~ 170 (580)
++++|.|.. ...+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+... ..+..... +..+++..|.
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~-l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKK-LVLLSLLDNK 219 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHH-HHHhhccccc
Confidence 888888874 3456668888888888888874433 1 46778888888888887622 22222222 4555777777
Q ss_pred CCCccCccCCCCCC--CCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccccc---
Q 008024 171 LEGNVPVQLNNLER--LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR--- 245 (580)
Q Consensus 171 l~~~~~~~~~~l~~--L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--- 245 (580)
++..-+ +..+.. |+.+++++|.+.......-.+..+..+++.+|++... ..+.....+..+....+.+...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 763221 222233 7888888888775433333677888888888887643 2334445666666777766521
Q ss_pred CCcc-ccCCCCccEEEcCCCcCCCCCh
Q 008024 246 IPHQ-INEHSNLRFLLLGGNHLQGPIP 271 (580)
Q Consensus 246 ~~~~-~~~~~~L~~L~L~~n~l~~~~~ 271 (580)
.... ....+.++...+..|.+....+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hccccccccccccccccccCccccccc
Confidence 1111 4556788888888888765444
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=1.8e-10 Score=118.40 Aligned_cols=263 Identities=26% Similarity=0.291 Sum_probs=187.2
Q ss_pred CCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCCCCcEEEcccccccCccchHHhcCCCCCcEEE
Q 008024 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD 92 (580)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 92 (580)
...++.++...+.+.+.--. ...+..++.+.+..|.+.. .+++|+.|++..|.+.. +... ...+++|++|+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ 124 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLD 124 (414)
T ss_pred cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccc-hhhhhcchhee
Confidence 34566666666655422211 1466778888888887763 67899999999999984 3332 35689999999
Q ss_pred cccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhH-HhhccCCCcEEEeecCcC
Q 008024 93 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMSKNHL 171 (580)
Q Consensus 93 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l 171 (580)
+++|.|+.. ..+..++.|+.|++.+|.|+.. ..+..++.|+.+++++|.+.. +... ...+.. ++.+.+.+|.+
T Consensus 125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~-l~~l~l~~n~i 198 (414)
T KOG0531|consen 125 LSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD-IENDELSELIS-LEELDLGGNSI 198 (414)
T ss_pred ccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhh-hhhhhhhhccc-hHHHhccCCch
Confidence 999999864 3567788899999999999733 446669999999999999983 4332 355565 99999999998
Q ss_pred CCccCccCCCCCCCCEEEccCCCCCCccccCcCCC--CccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCcc
Q 008024 172 EGNVPVQLNNLERLRILDISENRLSGPIASSLNLS--SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 249 (580)
Q Consensus 172 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (580)
.. ...+..+..+..+++..|.++...+.. .+. .|+.+++++|.+.. .+..+..+..+..|++.+|++... ..
T Consensus 199 ~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~-~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 199 RE--IEGLDLLKKLVLLSLLDNKISKLEGLN-ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred hc--ccchHHHHHHHHhhcccccceeccCcc-cchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--cc
Confidence 73 334455566666688888877443322 223 38999999999873 335667778899999999998743 23
Q ss_pred ccCCCCccEEEcCCCcCCCC---Chhh-hcCCCCCCEEECcCCcccccCCh
Q 008024 250 INEHSNLRFLLLGGNHLQGP---IPDQ-LCQLQKLAMMDLSRNKFSGSIPP 296 (580)
Q Consensus 250 ~~~~~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 296 (580)
+...+.+..+....|.+... .... ....+.++.+.+..|.+....+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 44556677777777776521 1111 45668888899999988765543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=2e-09 Score=118.26 Aligned_cols=248 Identities=23% Similarity=0.223 Sum_probs=156.3
Q ss_pred CCCCCEEEcccCCCcc-----cCCCCcEEEccccc--ccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEE
Q 008024 43 LTSLEYLDLSHNNFEG-----EMKELSLLDLSRNY--FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 115 (580)
Q Consensus 43 l~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n~--~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 115 (580)
....+.+.+-+|.+.. .+++|++|-+..|. +. .++..+|..++.|+.|||++|.--+.+|..++++-+|++|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3566666666666542 55677777777775 33 7788888889999999999887667889999999999999
Q ss_pred EccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCC--CccCccCCCCCCCCEEEccCC
Q 008024 116 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE--GNVPVQLNNLERLRILDISEN 193 (580)
Q Consensus 116 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~ls~n 193 (580)
+++++.+. .+|..+.++..|.+|++..+.-...+|.....+.. |++|.+...... ...-..+.++.+|+.+.....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~-Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS-LRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc-ccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 99999988 88999999999999999988765555666666776 999988766422 122233445555555555333
Q ss_pred CCCCccccCcCCCCcc----EEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccC------CCCccEEEcCC
Q 008024 194 RLSGPIASSLNLSSVE----HLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE------HSNLRFLLLGG 263 (580)
Q Consensus 194 ~l~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~ 263 (580)
.. ........+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+......+... ++++..+...+
T Consensus 679 s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 679 SV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred hh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 22 1111112222222 2222222222 34456677788888888888876433323211 22333333333
Q ss_pred CcCCCCChhhhcCCCCCCEEECcCCcccccCCh
Q 008024 264 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 296 (580)
Q Consensus 264 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 296 (580)
+... ..+.+.-..++|+.|.+..+.....+.+
T Consensus 757 ~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 757 CHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cccc-cccchhhccCcccEEEEecccccccCCC
Confidence 3322 2333344558888888888776544443
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.59 E-value=6.3e-09 Score=84.52 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=51.4
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
+.++.|+|++|.++ .+|+++..++.|+.|+++.|.+. ..|.-+..+.+|-.||..+|.+. ++|-.+-.-+.....++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL 153 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence 34555666666666 56666666666666666666666 55666666666666666666666 44443322233333444
Q ss_pred cCCcccccCCCC
Q 008024 459 SYNNLSGRTPDK 470 (580)
Q Consensus 459 s~N~l~~~~p~~ 470 (580)
.++.+.+.-|.+
T Consensus 154 gnepl~~~~~~k 165 (177)
T KOG4579|consen 154 GNEPLGDETKKK 165 (177)
T ss_pred cCCcccccCccc
Confidence 555555444443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-08 Score=94.17 Aligned_cols=175 Identities=22% Similarity=0.249 Sum_probs=80.7
Q ss_pred CCcEEEcccCcCCCc-ccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCc-CCCCChh-HHhhccCCCcE
Q 008024 87 SLELLDLSNNNFEGQ-FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM-LSGHIPH-WMGNFSSELEI 163 (580)
Q Consensus 87 ~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~-~~~~~~~~L~~ 163 (580)
.|++||||...|+.. .-..+..+.+|+.|.+.++++.+.+...++...+|+.|+++.+. ++..... -+..+.. |..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~-L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR-LDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh-Hhh
Confidence 366666666555421 12233455666666666666665555556666666666666543 2211111 1222333 555
Q ss_pred EEeecCcCCCccCc-cCCC-CCCCCEEEccCCCCCCc---cccCc-CCCCccEEEcccCC-CCCCCcccccCCCCCCEEE
Q 008024 164 LSMSKNHLEGNVPV-QLNN-LERLRILDISENRLSGP---IASSL-NLSSVEHLSLQKNA-LNGLIPGELFRSCKLVTLN 236 (580)
Q Consensus 164 L~l~~n~l~~~~~~-~~~~-l~~L~~L~ls~n~l~~~---~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ 236 (580)
|+++.|.+....-. .+.+ -++|+.|+++++.-.-. ..... .+++|.+|||++|. ++......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 55555554321110 0111 13455555555421100 00001 45556666665542 2323333445555666666
Q ss_pred cccCcccccCCcc---ccCCCCccEEEcCCC
Q 008024 237 LRDNTFSGRIPHQ---INEHSNLRFLLLGGN 264 (580)
Q Consensus 237 L~~n~l~~~~~~~---~~~~~~L~~L~L~~n 264 (580)
++.|.. .+|.. +...|+|.+|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 655543 23322 344555666665544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=1.7e-09 Score=110.38 Aligned_cols=173 Identities=28% Similarity=0.301 Sum_probs=113.0
Q ss_pred CcccCCCCCCCEEEcccCCCcc------cCCCCcEEEccccccc----------CccchHHhcCCCCCcEEEcccCcCCC
Q 008024 37 PSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNYFS----------GGLSQSVVTGCFSLELLDLSNNNFEG 100 (580)
Q Consensus 37 ~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~~~----------~~~~~~~~~~l~~L~~L~ls~n~i~~ 100 (580)
|-.+..+.+|++|.|.++.+.. --..|++|...+ .+. |.+..+. --..|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHH-
Confidence 5567778888999988888763 111233332221 111 1111110 0125777778888876
Q ss_pred cccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCC
Q 008024 101 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 180 (580)
Q Consensus 101 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 180 (580)
....++.-++.|+.|+|++|+++.. +.+..++.|++|||++|.++ .+|.. +.-..+|+.|.+++|.++. -..+.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l-~~~gc~L~~L~lrnN~l~t--L~gie 251 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQL-SMVGCKLQLLNLRNNALTT--LRGIE 251 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccccc-chhhhhheeeeecccHHHh--hhhHH
Confidence 4556667778888888888888744 37788888888888888887 55542 2222238888888888862 23467
Q ss_pred CCCCCCEEEccCCCCCCccccC--cCCCCccEEEcccCCCC
Q 008024 181 NLERLRILDISENRLSGPIASS--LNLSSVEHLSLQKNALN 219 (580)
Q Consensus 181 ~l~~L~~L~ls~n~l~~~~~~~--~~l~~L~~L~L~~n~l~ 219 (580)
++.+|+.||+++|-+.+...-. +.+..|+.|.|.+|.+.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888899888877643322 26777888888888765
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=5.1e-09 Score=107.04 Aligned_cols=128 Identities=28% Similarity=0.261 Sum_probs=93.3
Q ss_pred CcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEc
Q 008024 134 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 213 (580)
Q Consensus 134 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L 213 (580)
..|...+.++|.+. .+.+.+.-++. ++.|+|++|+++... .+..++.|++|||++|.+...+.-...-..|..|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~a-le~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPA-LESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHH-hhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeee
Confidence 35677777888877 66666766666 899999999987443 677888999999999988755443332234888999
Q ss_pred ccCCCCCCCcccccCCCCCCEEEcccCcccccC-CccccCCCCccEEEcCCCcCC
Q 008024 214 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI-PHQINEHSNLRFLLLGGNHLQ 267 (580)
Q Consensus 214 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~ 267 (580)
++|.++.. ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|+|.||.+-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99988754 35677888889999998877431 122345677888888888875
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=9.5e-08 Score=87.96 Aligned_cols=107 Identities=25% Similarity=0.292 Sum_probs=65.9
Q ss_pred cCCCCCCCEEEcccCCCcc---------cCCCCcEEEcccccccCc-cchHHhcCCCCCcEEEcccCcCCCcccccccCC
Q 008024 40 ISNLTSLEYLDLSHNNFEG---------EMKELSLLDLSRNYFSGG-LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNL 109 (580)
Q Consensus 40 ~~~l~~L~~L~L~~n~l~~---------~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l 109 (580)
++.+..++.|.+.++.|.. ..+.++.+||.+|.++.- --..++.++|.|+.|+++.|.+...+-..-..+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 3344455566666665553 566777788888877631 123455678888888888887764332211345
Q ss_pred CCCCEEEccCCcCCc-cccccccCCCcccEEecccCcC
Q 008024 110 TRLRHLYFENNNFSG-KIKDGLLSSTSLQVLDISNNML 146 (580)
Q Consensus 110 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l 146 (580)
.+|++|.|.+..+.- .....+..++.++.|.++.|.+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 678888887776651 2234455667777777777743
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=9.8e-08 Score=86.75 Aligned_cols=184 Identities=24% Similarity=0.209 Sum_probs=93.9
Q ss_pred ccCCCCCCEEEccCCcCCcccc----ccccCCCcccEEecccCcCCCC----ChhH---------HhhccCCCcEEEeec
Q 008024 106 YMNLTRLRHLYFENNNFSGKIK----DGLLSSTSLQVLDISNNMLSGH----IPHW---------MGNFSSELEILSMSK 168 (580)
Q Consensus 106 ~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~----~p~~---------~~~~~~~L~~L~l~~ 168 (580)
+.++|+|+..+|++|.+....| +.++..+.|++|.+++|.+.-. +-.+ ..+.|. |++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~-Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPK-LEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCC-ceEEEecc
Confidence 3445555555555555543333 2234445555666655554311 1111 112333 77777777
Q ss_pred CcCCCccCc-----cCCCCCCCCEEEccCCCCCCccc------cCcCCCCccEEEcccCCCCCCC----cccccCCCCCC
Q 008024 169 NHLEGNVPV-----QLNNLERLRILDISENRLSGPIA------SSLNLSSVEHLSLQKNALNGLI----PGELFRSCKLV 233 (580)
Q Consensus 169 n~l~~~~~~-----~~~~l~~L~~L~ls~n~l~~~~~------~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~ 233 (580)
|++.. .+. .+.....|+.+.+..|.+....- ..+.+.+|+.||+.+|-++-.. ...+..++.|+
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 77652 221 12233567777777776653211 1125667777777777665322 22344455677
Q ss_pred EEEcccCcccccCCccc------cCCCCccEEEcCCCcCCCCCh------hhh-cCCCCCCEEECcCCccc
Q 008024 234 TLNLRDNTFSGRIPHQI------NEHSNLRFLLLGGNHLQGPIP------DQL-CQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 234 ~L~L~~n~l~~~~~~~~------~~~~~L~~L~L~~n~l~~~~~------~~~-~~l~~L~~L~Ls~N~l~ 291 (580)
.|.+.+|-++......+ ...++|..|-..+|.+.+.+. ... ..++-|..|.+.+|++.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 77777776664333222 125667777777776543221 111 23455566666666664
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=3.3e-07 Score=83.39 Aligned_cols=239 Identities=21% Similarity=0.214 Sum_probs=124.6
Q ss_pred ccCCCCCcCEEEccCCCCCCCC----CcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchH------HhcC
Q 008024 15 CLKNLTRLKILDISSNQLNGSL----PSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQS------VVTG 84 (580)
Q Consensus 15 ~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~------~~~~ 84 (580)
.+..+..++.+|||+|.|.... ...+++-.+|+..+++.-.... ....++.. .+.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr--------------~kde~~~~L~~Ll~aLlk 90 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGR--------------DKDELYSNLVMLLKALLK 90 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcc--------------cHHHHHHHHHHHHHHHhc
Confidence 3445777888888888776443 3344556677777766532211 00011111 1234
Q ss_pred CCCCcEEEcccCcCCCccccc----ccCCCCCCEEEccCCcCCcc----ccc---------cccCCCcccEEecccCcCC
Q 008024 85 CFSLELLDLSNNNFEGQFFSE----YMNLTRLRHLYFENNNFSGK----IKD---------GLLSSTSLQVLDISNNMLS 147 (580)
Q Consensus 85 l~~L~~L~ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~----~~~---------~l~~l~~L~~L~l~~n~l~ 147 (580)
||.|+..+||.|.+....|+. ++.-+.|.+|.+++|.+... +.. ....-+.|++.+...|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 455555555555544333322 23344555555555554311 111 1123456777777777665
Q ss_pred CCChhHHh----hccCCCcEEEeecCcCCCcc-----CccCCCCCCCCEEEccCCCCCCccccCc-----CCCCccEEEc
Q 008024 148 GHIPHWMG----NFSSELEILSMSKNHLEGNV-----PVQLNNLERLRILDISENRLSGPIASSL-----NLSSVEHLSL 213 (580)
Q Consensus 148 ~~~p~~~~----~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~ls~n~l~~~~~~~~-----~l~~L~~L~L 213 (580)
..|.... .....|+.+.+..|.|.... ...+..+.+|+.||+..|.++....... ..+.|++|.+
T Consensus 171 -ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 171 -NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred -cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 2222111 11123777777777665221 1123456677777777777764332221 3445777777
Q ss_pred ccCCCCCCCccccc------CCCCCCEEEcccCcccccCCcc-----c--cCCCCccEEEcCCCcCCC
Q 008024 214 QKNALNGLIPGELF------RSCKLVTLNLRDNTFSGRIPHQ-----I--NEHSNLRFLLLGGNHLQG 268 (580)
Q Consensus 214 ~~n~l~~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~-----~--~~~~~L~~L~L~~n~l~~ 268 (580)
.+|-++.....++. ..++|..|...+|.+.+..-.. + ..++-|..|.+.+|++..
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 77776644333221 2467777777777665332111 1 346778888888998863
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=6.2e-08 Score=78.85 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=75.8
Q ss_pred CcCEEEccCCCCCCCCCcccC---CCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCc
Q 008024 21 RLKILDISSNQLNGSLPSVIS---NLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 97 (580)
Q Consensus 21 ~L~~L~Ls~n~i~~~~~~~~~---~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 97 (580)
.+..+||++|.+. .+++... ...+|+..+|++|.+. .+|..+-...+.++.|++++|.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk------------------~fp~kft~kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK------------------KFPKKFTIKFPTATTLNLANNE 88 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh------------------hCCHHHhhccchhhhhhcchhh
Confidence 4556677777665 4444433 3344444455555544 6777776777788888888888
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhH
Q 008024 98 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 153 (580)
Q Consensus 98 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 153 (580)
|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+..+|.+. .+|..
T Consensus 89 is-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 89 IS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 87 46666888888888888888887 66777777788888888877776 55554
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.4e-07 Score=86.94 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=116.3
Q ss_pred CCCcCEEEccCCCCCCCCC-cccC-CCCCCCEEEcccCCCcc---------cCCCCcEEEcccccccCccchHHhcCCCC
Q 008024 19 LTRLKILDISSNQLNGSLP-SVIS-NLTSLEYLDLSHNNFEG---------EMKELSLLDLSRNYFSGGLSQSVVTGCFS 87 (580)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~~-~~~~-~l~~L~~L~L~~n~l~~---------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 87 (580)
...++.|-+.++.|..... ..|+ ..++++.+||.+|.|++ ++|.|++|+++.|.+...|...- ....+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccc
Confidence 3345566666666653211 2232 56788899999999886 88999999999998875443321 24668
Q ss_pred CcEEEcccCcCCCc-ccccccCCCCCCEEEccCCcCCcc--ccccccC-CCcccEEecccCcCCC--CChhHHhhccCCC
Q 008024 88 LELLDLSNNNFEGQ-FFSEYMNLTRLRHLYFENNNFSGK--IKDGLLS-STSLQVLDISNNMLSG--HIPHWMGNFSSEL 161 (580)
Q Consensus 88 L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~-l~~L~~L~l~~n~l~~--~~p~~~~~~~~~L 161 (580)
|+.|-|.+..+.-. ....+..+|.+++|.++.|.+... ..+.... .+.+++|....|.... .+..--.-+|+ +
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn-v 201 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN-V 201 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc-c
Confidence 99999998877532 223456788899999998854311 1111111 2345555555553320 00001111333 7
Q ss_pred cEEEeecCcCCCcc-CccCCCCCCCCEEEccCCCCCCccc--cCcCCCCccEEEcccCCCCC
Q 008024 162 EILSMSKNHLEGNV-PVQLNNLERLRILDISENRLSGPIA--SSLNLSSVEHLSLQKNALNG 220 (580)
Q Consensus 162 ~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~l~~L~~L~L~~n~l~~ 220 (580)
..+.+..|.+.... ......++.+..|+|+.+++..-.. ..-+++.|..|.++++.+.+
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 77777777665322 2334455666677777777653221 11256667777777666553
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.3e-08 Score=91.89 Aligned_cols=175 Identities=22% Similarity=0.210 Sum_probs=114.8
Q ss_pred CCCEEEccCCcCCc-cccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCc-CCCc-cCccCCCCCCCCE
Q 008024 111 RLRHLYFENNNFSG-KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH-LEGN-VPVQLNNLERLRI 187 (580)
Q Consensus 111 ~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~ 187 (580)
.|++|||++..|+. .+-..+..+.+|+.|.+.++.+.+.+...+++... |+.|+++.+. ++.. ..-.+.+|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~-L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN-LVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc-ceeeccccccccchhHHHHHHHhhhhHhh
Confidence 58888888877762 23344667788888888888888777777877766 8888888763 3311 1122467788888
Q ss_pred EEccCCCCCCccccCc---CCCCccEEEcccCCCC---CCCcccccCCCCCCEEEcccCcc-cccCCccccCCCCccEEE
Q 008024 188 LDISENRLSGPIASSL---NLSSVEHLSLQKNALN---GLIPGELFRSCKLVTLNLRDNTF-SGRIPHQINEHSNLRFLL 260 (580)
Q Consensus 188 L~ls~n~l~~~~~~~~---~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~ 260 (580)
|+++.+.+........ --++|+.|+++++.-. ..+..-..++++|.+|||++|.. +......|-+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 8888887665432222 3467788888775311 12222345678888888888643 322334456678888888
Q ss_pred cCCCcCCCCChhhh---cCCCCCCEEECcCC
Q 008024 261 LGGNHLQGPIPDQL---CQLQKLAMMDLSRN 288 (580)
Q Consensus 261 L~~n~l~~~~~~~~---~~l~~L~~L~Ls~N 288 (580)
++.|.. .+|..+ ...+.|.+||+-++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 888874 466554 45678888887654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=1.4e-06 Score=57.48 Aligned_cols=36 Identities=36% Similarity=0.641 Sum_probs=18.3
Q ss_pred cCCeeeCcCCccccccchhhhCcccCCeEeCCCCeee
Q 008024 404 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 440 (580)
Q Consensus 404 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 440 (580)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555555
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=2.2e-06 Score=56.52 Aligned_cols=38 Identities=42% Similarity=0.670 Sum_probs=33.0
Q ss_pred ccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccc
Q 008024 427 KMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 465 (580)
Q Consensus 427 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 465 (580)
++|++|++++|+|+ .+|..+..|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 678789999999999999999974
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=1.7e-05 Score=78.72 Aligned_cols=73 Identities=12% Similarity=0.281 Sum_probs=42.4
Q ss_pred CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCC-cCCCCChhhhcCCCCCCE
Q 008024 204 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN-HLQGPIPDQLCQLQKLAM 282 (580)
Q Consensus 204 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 282 (580)
.+.+++.|++++|.++. +| .+ .++|+.|.++++.--..+|..+ .++|++|++++| .+. .+|. .|+.
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccce
Confidence 35677788888777763 34 12 2357777777644333555544 246777777776 333 3442 4566
Q ss_pred EECcCCc
Q 008024 283 MDLSRNK 289 (580)
Q Consensus 283 L~Ls~N~ 289 (580)
|+++.+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 6665544
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3.7e-05 Score=67.37 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=47.1
Q ss_pred cCEEEccCCCCCCCCCcccC-CCCCCCEEEcccCCCcc-----cCCCCcEEEcccccccCccchHHhcCCCCCcEEEccc
Q 008024 22 LKILDISSNQLNGSLPSVIS-NLTSLEYLDLSHNNFEG-----EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 95 (580)
Q Consensus 22 L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~ 95 (580)
=+.++|++.++.. +.. ++ -+.+...+||++|.+.. .++.|.+|.|.+|+|+ .+.+.+-..+++|..|.|.+
T Consensus 21 e~e~~LR~lkip~-ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPV-IEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccc-hhh-ccccccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecC
Confidence 4556666665541 111 22 12345566666665542 3444555555555554 34444434455555555555
Q ss_pred CcCCCcc-cccccCCCCCCEEEccCCcCC
Q 008024 96 NNFEGQF-FSEYMNLTRLRHLYFENNNFS 123 (580)
Q Consensus 96 n~i~~~~-~~~~~~l~~L~~L~L~~n~l~ 123 (580)
|+|.... ...+..+|+|++|.+-+|.++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchh
Confidence 5554211 112344555555555555544
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.9e-05 Score=85.09 Aligned_cols=192 Identities=22% Similarity=0.245 Sum_probs=116.3
Q ss_pred CCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc----------------------cCCCCcEEEccccccc
Q 008024 17 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG----------------------EMKELSLLDLSRNYFS 74 (580)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------~l~~L~~L~Ls~n~~~ 74 (580)
...-+++..++.+.......-+.+.... |+.+.|.+-.... .-.+|++||+++....
T Consensus 57 ~~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~ 135 (699)
T KOG3665|consen 57 IRKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF 135 (699)
T ss_pred hhhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence 3444666677766655544334444433 6666665432110 4567888888776432
Q ss_pred -CccchHHhcCCCCCcEEEcccCcCCCc-ccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCC-CCh
Q 008024 75 -GGLSQSVVTGCFSLELLDLSNNNFEGQ-FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG-HIP 151 (580)
Q Consensus 75 -~~~~~~~~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p 151 (580)
..-|..+...+|+|+.|.+++-.+... .-....++++|..||+++++++.. .+++++++|+.|.+.+=.+.. ..-
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH
Confidence 234555566778888888887665422 223445778888888888888743 667888888888877766552 223
Q ss_pred hHHhhccCCCcEEEeecCcCCCcc------CccCCCCCCCCEEEccCCCCCCccccCc--CCCCccEEE
Q 008024 152 HWMGNFSSELEILSMSKNHLEGNV------PVQLNNLERLRILDISENRLSGPIASSL--NLSSVEHLS 212 (580)
Q Consensus 152 ~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~ls~n~l~~~~~~~~--~l~~L~~L~ 212 (580)
..++.+.. |+.||+|..+..... -+.-..+|+|+.||.|+..+.+.....+ .-++|+.+.
T Consensus 214 ~~LF~L~~-L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 214 IDLFNLKK-LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred HHHhcccC-CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 45667776 888888876654211 1122347899999999877765433332 334444443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=7.7e-06 Score=88.12 Aligned_cols=133 Identities=25% Similarity=0.354 Sum_probs=84.4
Q ss_pred CCCcEEEcccCcCCC-cccccc-cCCCCCCEEEccCCcCCc-cccccccCCCcccEEecccCcCCCCChhHHhhccCCCc
Q 008024 86 FSLELLDLSNNNFEG-QFFSEY-MNLTRLRHLYFENNNFSG-KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 162 (580)
Q Consensus 86 ~~L~~L~ls~n~i~~-~~~~~~-~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 162 (580)
.+|++|++++...-. .-+..+ ..+|+|+.|.+.+-.+.. .+-....++++|..||+|+.+++ .+ ..++.+.+ |+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~Lkn-Lq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKN-LQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhcccc-HH
Confidence 368888887754321 112222 346888888888766542 22344567788888888888887 33 66777776 88
Q ss_pred EEEeecCcCCC-ccCccCCCCCCCCEEEccCCCCCCccc-------cCcCCCCccEEEcccCCCCCC
Q 008024 163 ILSMSKNHLEG-NVPVQLNNLERLRILDISENRLSGPIA-------SSLNLSSVEHLSLQKNALNGL 221 (580)
Q Consensus 163 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~-------~~~~l~~L~~L~L~~n~l~~~ 221 (580)
.|.+.+=.+.. ..-..+.++++|+.||+|......... ....+|+|+.||.+++.+.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 88777766652 122345668888888888765543321 011578888888887776643
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=6.5e-05 Score=65.89 Aligned_cols=85 Identities=28% Similarity=0.285 Sum_probs=55.1
Q ss_pred CCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCC-hhhhcCCCCCCEE
Q 008024 205 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMM 283 (580)
Q Consensus 205 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 283 (580)
......+||++|.+... +.|..++.|.+|.+.+|.|+.+.|.--..+++|+.|.|.+|.+.... -..+..|++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34556677777776532 34666677777788888777655554455677778888877765311 1235567778888
Q ss_pred ECcCCccc
Q 008024 284 DLSRNKFS 291 (580)
Q Consensus 284 ~Ls~N~l~ 291 (580)
.+-+|+.+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 77777665
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00011 Score=72.98 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=17.8
Q ss_pred CCccEEEcccCCCCCCCcccccCCCCCCEEEcccC
Q 008024 206 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 240 (580)
Q Consensus 206 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 240 (580)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666544 2333332 36777777655
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.0003 Score=59.41 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=46.9
Q ss_pred hhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEE
Q 008024 12 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL 91 (580)
Q Consensus 12 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L 91 (580)
...+|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...|.++++|+.+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~------------------~i~~~~F~~~~~l~~i 63 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT------------------SIGDNAFSNCKSLESI 63 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS------------------CE-TTTTTT-TT-EEE
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc------------------ccceeeeecccccccc
Confidence 455677777777777764 455455666777777777776654 43 4444455555555555
Q ss_pred EcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecc
Q 008024 92 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 142 (580)
Q Consensus 92 ~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 142 (580)
.+.. .+.......|..+++|+.+.+..+ +.......|.++ +|+.+.+.
T Consensus 64 ~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 64 TFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5543 333233334444555555555443 332223334433 44444443
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.39 E-value=1.6e-05 Score=77.15 Aligned_cols=271 Identities=18% Similarity=0.132 Sum_probs=155.0
Q ss_pred CCcCEEEccCCCCCCCCC--cccCCCCCCCEEEcccCC-Ccc--------cCCCCcEEEcccc-cccCccchHHhcCCCC
Q 008024 20 TRLKILDISSNQLNGSLP--SVISNLTSLEYLDLSHNN-FEG--------EMKELSLLDLSRN-YFSGGLSQSVVTGCFS 87 (580)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~n~-l~~--------~l~~L~~L~Ls~n-~~~~~~~~~~~~~l~~ 87 (580)
..|+.|.++++.=.+.-+ ..-.++|++++|.+.++. +++ .+++|++|++..| .++...-..+..++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468888888876443322 233578888888888875 332 7888999999884 4554444456678899
Q ss_pred CcEEEcccCc-CCCccc-ccccCCCCCCEEEccCCcCCcc--ccccccCCCcccEEecccCc-CCCCChhHHhhccCCCc
Q 008024 88 LELLDLSNNN-FEGQFF-SEYMNLTRLRHLYFENNNFSGK--IKDGLLSSTSLQVLDISNNM-LSGHIPHWMGNFSSELE 162 (580)
Q Consensus 88 L~~L~ls~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~ 162 (580)
|++|+++++. |++... ..+.++..++.+.+.+|.-.+. +...-+.+.-+..+++..+. +++.---.+......|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999998874 333211 2234555666666665432110 11111234445556655543 33221111222222378
Q ss_pred EEEeecCcC-CCccCccC-CCCCCCCEEEccCCCC-CCccccCc--CCCCccEEEcccCCCCCC--CcccccCCCCCCEE
Q 008024 163 ILSMSKNHL-EGNVPVQL-NNLERLRILDISENRL-SGPIASSL--NLSSVEHLSLQKNALNGL--IPGELFRSCKLVTL 235 (580)
Q Consensus 163 ~L~l~~n~l-~~~~~~~~-~~l~~L~~L~ls~n~l-~~~~~~~~--~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L 235 (580)
.|+.+++.- +...-..+ .+..+|+.+-++.++. +....... +.+.|+.+++..+..... +...-..++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 887776643 22221222 3567888888888763 22222222 677888888877654321 12222456788888
Q ss_pred EcccCcccccC-----CccccCCCCccEEEcCCCcCC-CCChhhhcCCCCCCEEECcCCcc
Q 008024 236 NLRDNTFSGRI-----PHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRNKF 290 (580)
Q Consensus 236 ~L~~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l 290 (580)
.++++...... ...-..+..|..+.|++++.. +..-+.+..+++|+.+++-+++-
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 88877543111 122234667888888888754 22334456778888888877653
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.25 E-value=1.4e-05 Score=77.54 Aligned_cols=269 Identities=19% Similarity=0.132 Sum_probs=169.9
Q ss_pred ccCCCCCcCEEEccCCC-CCCCCCccc-CCCCCCCEEEcccC-CCcc--------cCCCCcEEEccccc-ccCccchHHh
Q 008024 15 CLKNLTRLKILDISSNQ-LNGSLPSVI-SNLTSLEYLDLSHN-NFEG--------EMKELSLLDLSRNY-FSGGLSQSVV 82 (580)
Q Consensus 15 ~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~l~~--------~l~~L~~L~Ls~n~-~~~~~~~~~~ 82 (580)
.-.++++++.|++.++. ++......+ ..+++|++|+|..+ .+++ .+++|++|+++++. +++.--..++
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 34578999999999885 332222333 36889999999884 3443 79999999999985 4544445667
Q ss_pred cCCCCCcEEEcccCcCCCcccccc----cCCCCCCEEEccCCc-CCccc-cccccCCCcccEEecccCcC-CCCChhHHh
Q 008024 83 TGCFSLELLDLSNNNFEGQFFSEY----MNLTRLRHLYFENNN-FSGKI-KDGLLSSTSLQVLDISNNML-SGHIPHWMG 155 (580)
Q Consensus 83 ~~l~~L~~L~ls~n~i~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~l-~~~~p~~~~ 155 (580)
.++..++.+.+.++.=. ..+.+ ....-+.++++.++. ++... -..-..+..|+.|+.+++.- ++..-..++
T Consensus 239 rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred ccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 78888888877764211 11222 234456667766653 33221 11224577899999988754 333334556
Q ss_pred hccCCCcEEEeecCc-CCCccCccC-CCCCCCCEEEccCCCCCCcc--c-cCcCCCCccEEEcccCCCCCCC-----ccc
Q 008024 156 NFSSELEILSMSKNH-LEGNVPVQL-NNLERLRILDISENRLSGPI--A-SSLNLSSVEHLSLQKNALNGLI-----PGE 225 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~--~-~~~~l~~L~~L~L~~n~l~~~~-----~~~ 225 (580)
.-..+|+.|.++.++ ++......+ .+++.|+.+++..+...... . ...+++.|+.+.++++...... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 555669999999986 332222222 35788999999887654322 1 1227899999999988653221 112
Q ss_pred ccCCCCCCEEEcccCccc-ccCCccccCCCCccEEEcCCCcCC--CCChhhhcCCCCCCEEEC
Q 008024 226 LFRSCKLVTLNLRDNTFS-GRIPHQINEHSNLRFLLLGGNHLQ--GPIPDQLCQLQKLAMMDL 285 (580)
Q Consensus 226 ~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L 285 (580)
-.....|+.+.|+++... +..-+.+..+++|+.+++-++.-- ..+...-.+++++++..+
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 234567899999998765 334456678899999999887642 122233345666665543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.16 E-value=0.00071 Score=57.09 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=40.7
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHh
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 155 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 155 (580)
.++...|.++.+|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++|+.+++..+ +. .++....
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f 100 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSF 100 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTT
T ss_pred EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhh
Confidence 455555666666666666654 4444445566666666666654 333233345555666666666543 33 2222222
Q ss_pred hccCCCcEEEeecCcCCCccCccCCCCCCC
Q 008024 156 NFSSELEILSMSKNHLEGNVPVQLNNLERL 185 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 185 (580)
.-.. ++.+.+.. .+.......|.++++|
T Consensus 101 ~~~~-l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 101 SNCN-LKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-T---EEE-TT-B-SS----GGG-----
T ss_pred cCCC-ceEEEECC-CccEECCccccccccC
Confidence 2223 55555544 2232333444444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00027 Score=64.83 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=8.0
Q ss_pred CCCcccEEecccCcCC
Q 008024 132 SSTSLQVLDISNNMLS 147 (580)
Q Consensus 132 ~l~~L~~L~l~~n~l~ 147 (580)
.+.+|..|++.+|..+
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 3444555555555444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00043 Score=63.53 Aligned_cols=104 Identities=25% Similarity=0.298 Sum_probs=64.2
Q ss_pred CCCCCCCEEEcccCCCcc-----cCCCCcEEEcccc--cccCccchHHhcCCCCCcEEEcccCcCCC-cccccccCCCCC
Q 008024 41 SNLTSLEYLDLSHNNFEG-----EMKELSLLDLSRN--YFSGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSEYMNLTRL 112 (580)
Q Consensus 41 ~~l~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n--~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L 112 (580)
-.+..|+.|++.+..++. .+++|++|+++.| ++.+.++.-+ ..+++|++|+++.|+|.. .....+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcch
Confidence 344455555555554443 5666777777777 4444444433 456899999999998862 111234566778
Q ss_pred CEEEccCCcCCccc---cccccCCCcccEEecccCc
Q 008024 113 RHLYFENNNFSGKI---KDGLLSSTSLQVLDISNNM 145 (580)
Q Consensus 113 ~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l~~n~ 145 (580)
..|++.+|..+... ...|.-+++|++||-....
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 88888888776421 1345567888888765443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00017 Score=66.39 Aligned_cols=87 Identities=23% Similarity=0.223 Sum_probs=58.0
Q ss_pred CCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCcccc-ccccCCCcccE
Q 008024 60 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQV 138 (580)
Q Consensus 60 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~ 138 (580)
+.+.+.|++.++.++ . ..++..++.|+.|.||-|+|+..- .+..+++|++|+|..|.|..... ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345566777777665 2 244567788888888888887533 46777888888888887763221 34566777777
Q ss_pred EecccCcCCCCCh
Q 008024 139 LDISNNMLSGHIP 151 (580)
Q Consensus 139 L~l~~n~l~~~~p 151 (580)
|-|..|+-.|..+
T Consensus 93 LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 93 LWLDENPCCGEAG 105 (388)
T ss_pred HhhccCCcccccc
Confidence 7777777665444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.31 E-value=0.0017 Score=35.45 Aligned_cols=19 Identities=47% Similarity=0.723 Sum_probs=10.2
Q ss_pred CCeEeCCCCeeeecCccccc
Q 008024 429 IESLDISYNKLTGQIPPQLT 448 (580)
Q Consensus 429 L~~LdLs~N~l~~~~p~~l~ 448 (580)
|++|||++|+++ .+|..|.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0006 Score=62.90 Aligned_cols=97 Identities=25% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-----cCCCCcEEEcccccccCccchHHhcCCCCCcEEE
Q 008024 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD 92 (580)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 92 (580)
.+.+.+.|++-++.++.+ .....++.|++|.|+-|+|+. .|++|++|.|..|.|...-.-..+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 356778888888888743 234578889999999988886 7888899999999887544455678999999999
Q ss_pred cccCcCCCcccc-----cccCCCCCCEEE
Q 008024 93 LSNNNFEGQFFS-----EYMNLTRLRHLY 116 (580)
Q Consensus 93 ls~n~i~~~~~~-----~~~~l~~L~~L~ 116 (580)
|..|.-.+..+. .+.-+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 999876654432 345678888775
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.90 E-value=0.0028 Score=67.03 Aligned_cols=229 Identities=25% Similarity=0.173 Sum_probs=126.8
Q ss_pred CCCCCcCEEEccCCCCCCC--CCcccCCCCCCCEEEcccC-CC-c----------ccCCCCcEEEccccc-ccCccchHH
Q 008024 17 KNLTRLKILDISSNQLNGS--LPSVISNLTSLEYLDLSHN-NF-E----------GEMKELSLLDLSRNY-FSGGLSQSV 81 (580)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n-~l-~----------~~l~~L~~L~Ls~n~-~~~~~~~~~ 81 (580)
..++.|+.|.+..+.-... .-......++|+.|+++++ .. . ..+++|+.|+++++. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478888888887743323 2345567889999999873 11 1 167889999999988 665555555
Q ss_pred hcCCCCCcEEEcccCc-CCCccccc-ccCCCCCCEEEccCCcCCc--cccccccCCCcccEEecccCcCCCCChhHHhhc
Q 008024 82 VTGCFSLELLDLSNNN-FEGQFFSE-YMNLTRLRHLYFENNNFSG--KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 157 (580)
Q Consensus 82 ~~~l~~L~~L~ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 157 (580)
...+++|++|.+..+. ++...-.. ...++.|++|+++++.... .+.....++++++.|.+....- .
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence 5568899999987776 55433222 3467889999999876531 1223344566666655443321 1
Q ss_pred cCCCcEEEeecCcC---CCccCccCCCCCCCCEEEccCCCCCCccc-cCc-CCCCccEEEcccCCCCCCCcccccCCCCC
Q 008024 158 SSELEILSMSKNHL---EGNVPVQLNNLERLRILDISENRLSGPIA-SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 232 (580)
Q Consensus 158 ~~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 232 (580)
+. ++.+.+....- ..........+++++.+.+..+....... ... +++.|. ..+... ......+
T Consensus 335 ~~-l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l 403 (482)
T KOG1947|consen 335 PS-LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDSL 403 (482)
T ss_pred cc-HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCcc
Confidence 11 22232222211 11222334567788888887776332221 111 455552 211111 1111227
Q ss_pred CEEEcccCccccc-CCccccC-CCCccEEEcCCCcC
Q 008024 233 VTLNLRDNTFSGR-IPHQINE-HSNLRFLLLGGNHL 266 (580)
Q Consensus 233 ~~L~L~~n~l~~~-~~~~~~~-~~~L~~L~L~~n~l 266 (580)
+.|+++.+..... .-..... +..++.+++.++..
T Consensus 404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 7777777664311 1111111 55667777776654
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0039 Score=34.05 Aligned_cols=20 Identities=60% Similarity=0.833 Sum_probs=11.4
Q ss_pred CCeeeCcCCccccccchhhhC
Q 008024 405 ILALNLSNNSLSGSIPESFSN 425 (580)
Q Consensus 405 L~~L~Ls~N~l~~~~p~~~~~ 425 (580)
|++|||++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 55554543
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.71 E-value=0.0034 Score=66.38 Aligned_cols=15 Identities=27% Similarity=0.087 Sum_probs=7.1
Q ss_pred cCCCCCCEEEcccCc
Q 008024 227 FRSCKLVTLNLRDNT 241 (580)
Q Consensus 227 ~~~~~L~~L~L~~n~ 241 (580)
..+++++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 334455555554444
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.79 E-value=0.0018 Score=58.18 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=72.4
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeee
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 457 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 457 (580)
....+.||++.|++. ..-..|.-++.|..|+++.|++. ..|..++.+..+..+++..|..+ ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 456788999999887 55566788889999999999998 88888999999999999999988 7899999999999999
Q ss_pred CcCCccc
Q 008024 458 VSYNNLS 464 (580)
Q Consensus 458 Ls~N~l~ 464 (580)
+..|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9988864
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.35 E-value=0.00089 Score=69.29 Aligned_cols=78 Identities=27% Similarity=0.236 Sum_probs=54.2
Q ss_pred CcCEEEccCCCCCCCCC----cccCCCCCCCEEEcccCCCcc-----------c-CCCCcEEEcccccccCccc----hH
Q 008024 21 RLKILDISSNQLNGSLP----SVISNLTSLEYLDLSHNNFEG-----------E-MKELSLLDLSRNYFSGGLS----QS 80 (580)
Q Consensus 21 ~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~-----------~-l~~L~~L~Ls~n~~~~~~~----~~ 80 (580)
.+..|+|.+|.+..... ..+...+.|+.|++++|.+.+ . -..+++|++..|.+++..- ..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788888888875433 345678888888898888875 2 2567778888888775332 33
Q ss_pred HhcCCCCCcEEEcccCcCC
Q 008024 81 VVTGCFSLELLDLSNNNFE 99 (580)
Q Consensus 81 ~~~~l~~L~~L~ls~n~i~ 99 (580)
+. ....++.++++.|.+.
T Consensus 168 L~-~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 168 LE-KNEHLTELDLSLNGLI 185 (478)
T ss_pred Hh-cccchhHHHHHhcccc
Confidence 32 3667888888888764
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.96 E-value=0.0009 Score=69.28 Aligned_cols=183 Identities=23% Similarity=0.210 Sum_probs=110.2
Q ss_pred CcEEEcccccccCccchH---HhcCCCCCcEEEcccCcCCCcccc----cccCC-CCCCEEEccCCcCCc----cccccc
Q 008024 63 LSLLDLSRNYFSGGLSQS---VVTGCFSLELLDLSNNNFEGQFFS----EYMNL-TRLRHLYFENNNFSG----KIKDGL 130 (580)
Q Consensus 63 L~~L~Ls~n~~~~~~~~~---~~~~l~~L~~L~ls~n~i~~~~~~----~~~~l-~~L~~L~L~~n~l~~----~~~~~l 130 (580)
+..|.|.+|.+....... .+...++|+.|++++|.+.+.... .+... ..+++|++..|.++. .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 555566666555332222 234456777777777777632222 12222 456667777777663 334556
Q ss_pred cCCCcccEEecccCcCCC----CChhHHhh---ccCCCcEEEeecCcCCCc----cCccCCCCCC-CCEEEccCCCCCCc
Q 008024 131 LSSTSLQVLDISNNMLSG----HIPHWMGN---FSSELEILSMSKNHLEGN----VPVQLNNLER-LRILDISENRLSGP 198 (580)
Q Consensus 131 ~~l~~L~~L~l~~n~l~~----~~p~~~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~ls~n~l~~~ 198 (580)
.....++.++++.|.+.. .++..+.. ...++++|.+++|.++.. ....+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667788888888887641 22333332 233488888888887632 1122344444 66688888887654
Q ss_pred ccc-----CcCC-CCccEEEcccCCCCCCCc----ccccCCCCCCEEEcccCccccc
Q 008024 199 IAS-----SLNL-SSVEHLSLQKNALNGLIP----GELFRSCKLVTLNLRDNTFSGR 245 (580)
Q Consensus 199 ~~~-----~~~l-~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~ 245 (580)
... ...+ ..+++++++.|.++.... ..+..++.++.+.++.|.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 211 1133 678999999999886433 4455677899999999988743
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.78 E-value=0.028 Score=28.38 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=4.5
Q ss_pred cCCeEeCCCCeee
Q 008024 428 MIESLDISYNKLT 440 (580)
Q Consensus 428 ~L~~LdLs~N~l~ 440 (580)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.50 E-value=0.18 Score=28.66 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=11.9
Q ss_pred CCCcEEEcccccccCccchHHhc
Q 008024 61 KELSLLDLSRNYFSGGLSQSVVT 83 (580)
Q Consensus 61 ~~L~~L~Ls~n~~~~~~~~~~~~ 83 (580)
++|++|+|++|.+. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 34555555555554 66666553
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.50 E-value=0.18 Score=28.66 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=11.9
Q ss_pred CCCcEEEcccccccCccchHHhc
Q 008024 61 KELSLLDLSRNYFSGGLSQSVVT 83 (580)
Q Consensus 61 ~~L~~L~Ls~n~~~~~~~~~~~~ 83 (580)
++|++|+|++|.+. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 34555555555554 66666553
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.31 E-value=0.14 Score=29.14 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=7.9
Q ss_pred ccCCeEeCCCCeee
Q 008024 427 KMIESLDISYNKLT 440 (580)
Q Consensus 427 ~~L~~LdLs~N~l~ 440 (580)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555555
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.31 E-value=0.14 Score=29.14 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=7.9
Q ss_pred ccCCeEeCCCCeee
Q 008024 427 KMIESLDISYNKLT 440 (580)
Q Consensus 427 ~~L~~LdLs~N~l~ 440 (580)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555555
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.23 E-value=0.058 Score=30.04 Aligned_cols=13 Identities=46% Similarity=0.733 Sum_probs=5.2
Q ss_pred cCCeEeCCCCeee
Q 008024 428 MIESLDISYNKLT 440 (580)
Q Consensus 428 ~L~~LdLs~N~l~ 440 (580)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.86 E-value=0.1 Score=29.04 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=10.7
Q ss_pred ccCCeeeCcCCccccccchhh
Q 008024 403 QAILALNLSNNSLSGSIPESF 423 (580)
Q Consensus 403 ~~L~~L~Ls~N~l~~~~p~~~ 423 (580)
++|++|+|++|+|++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666665444433
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.40 E-value=0.015 Score=52.60 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=60.2
Q ss_pred ccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCC
Q 008024 104 SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 183 (580)
Q Consensus 104 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 183 (580)
..+......+.||++.|++. .....|.-++.+..||++.|.+. ..|.++..... +..+++..|..+ ..|.++...+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e-~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRE-TVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHH-HHHHHhhccchh-hCCccccccC
Confidence 34555667777777777765 34455666677777788877776 67777777665 677777777766 5677777777
Q ss_pred CCCEEEccCCCC
Q 008024 184 RLRILDISENRL 195 (580)
Q Consensus 184 ~L~~L~ls~n~l 195 (580)
.++++++-++.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 777777666553
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.83 E-value=3.2 Score=42.09 Aligned_cols=100 Identities=21% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc----------cCCCCcEEEcccccccCccchHHh--cCCCC
Q 008024 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG----------EMKELSLLDLSRNYFSGGLSQSVV--TGCFS 87 (580)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------~l~~L~~L~Ls~n~~~~~~~~~~~--~~l~~ 87 (580)
+.++++|++.|.+....|-.+.+-.. -+.++.+.++. .-..+++++++.|.....+|.-+- ..-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 34566666666665444433332110 03444444432 223356666666666555554321 11123
Q ss_pred CcEEEcccCcCCC---cccccccCCCCCCEEEccCCc
Q 008024 88 LELLDLSNNNFEG---QFFSEYMNLTRLRHLYFENNN 121 (580)
Q Consensus 88 L~~L~ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~ 121 (580)
++.++.+...+.- ..+-..+.-++++..+++.|.
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCC
Confidence 5555555544431 111122333455555555544
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.34 E-value=0.11 Score=46.07 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=44.5
Q ss_pred CcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccC-cCC
Q 008024 21 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN-NFE 99 (580)
Q Consensus 21 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n-~i~ 99 (580)
.++.+|-++..|..+.-+.+.+++.++.|.+.++.--+ +..-..+-+-.++|+.|++++| .|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d----------------D~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD----------------DWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh----------------hHHHHHhcccccchheeeccCCCeec
Confidence 35566666666665555666666666666666553211 0001111122456666666655 455
Q ss_pred CcccccccCCCCCCEEEccC
Q 008024 100 GQFFSEYMNLTRLRHLYFEN 119 (580)
Q Consensus 100 ~~~~~~~~~l~~L~~L~L~~ 119 (580)
...-..+..+++|+.|.+.+
T Consensus 166 ~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 166 DGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hhHHHHHHHhhhhHHHHhcC
Confidence 44445556666666666654
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.13 E-value=0.13 Score=45.72 Aligned_cols=81 Identities=20% Similarity=0.176 Sum_probs=58.4
Q ss_pred cccEEEccCCcCcccCChhhhccccCCeeeCcCCccccc-cchhhh-CcccCCeEeCCCC-eeeecCccccccCCcCCee
Q 008024 380 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS-IPESFS-NLKMIESLDISYN-KLTGQIPPQLTALNFLSIF 456 (580)
Q Consensus 380 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~-~l~~L~~LdLs~N-~l~~~~p~~l~~l~~L~~L 456 (580)
.++.+|-++..|..+--+.+..++.++.|.+.+|.--+. --+-++ -.++|+.|+|++| +||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 457799999999877777888888999999888853211 111111 3478999999977 5776666677788888888
Q ss_pred eCcC
Q 008024 457 NVSY 460 (580)
Q Consensus 457 ~Ls~ 460 (580)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.94 E-value=1.1 Score=25.35 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=7.1
Q ss_pred cCCeEeCCCCeee
Q 008024 428 MIESLDISYNKLT 440 (580)
Q Consensus 428 ~L~~LdLs~N~l~ 440 (580)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.45 E-value=1.3 Score=25.17 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=9.4
Q ss_pred ccCCeEeCCCCeee
Q 008024 427 KMIESLDISYNKLT 440 (580)
Q Consensus 427 ~~L~~LdLs~N~l~ 440 (580)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46667777777665
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.11 E-value=2.6 Score=24.39 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=9.0
Q ss_pred ccCCeEeCCCCeee
Q 008024 427 KMIESLDISYNKLT 440 (580)
Q Consensus 427 ~~L~~LdLs~N~l~ 440 (580)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666777777665
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.70 E-value=2.8 Score=51.91 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=20.6
Q ss_pred eCcCCccccccchhhhCcccCCeEeCCCCeeee
Q 008024 409 NLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 441 (580)
Q Consensus 409 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 441 (580)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 466666665555556666666666666666553
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.78 E-value=23 Score=36.19 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=11.2
Q ss_pred hcCCCCCcEEEcccCcCC
Q 008024 82 VTGCFSLELLDLSNNNFE 99 (580)
Q Consensus 82 ~~~l~~L~~L~ls~n~i~ 99 (580)
+....+++..+++.|..+
T Consensus 264 ~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 264 AGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred cccccccchhhhccCCCC
Confidence 344457777777777543
No 92
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=65.71 E-value=6 Score=32.48 Aligned_cols=18 Identities=6% Similarity=-0.009 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008024 534 GASYVTVILVLIAILWIN 551 (580)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~ 551 (580)
++|++.|+++++++++|+
T Consensus 70 i~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 93
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.90 E-value=5.4 Score=33.43 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=3.8
Q ss_pred HHHHhhcccc
Q 008024 546 AILWINSYWR 555 (580)
Q Consensus 546 ~~~~~~~~~~ 555 (580)
+++++.+++|
T Consensus 18 ~~~~~~rRR~ 27 (130)
T PF12273_consen 18 LFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHh
Confidence 3333433333
No 94
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=60.39 E-value=14 Score=23.85 Aligned_cols=32 Identities=9% Similarity=0.369 Sum_probs=17.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHhhcccchhhhh
Q 008024 529 LYSSFGASYVTVILVLIAILWINSYWRRLWFY 560 (580)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (580)
.|+.++.++++.+++++++++++.-++...|+
T Consensus 7 s~L~~~F~~lIC~Fl~~~~~F~~F~~Kqilfr 38 (54)
T PF06716_consen 7 SYLLLAFGFLICLFLFCLVVFIWFVYKQILFR 38 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35556666766666655555443333444443
No 95
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=60.27 E-value=19 Score=22.46 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=6.4
Q ss_pred HHhHHhHHHHHHHH
Q 008024 528 TLYSSFGASYVTVI 541 (580)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (580)
.++.++.+|+++.+
T Consensus 7 aIIv~V~vg~~iii 20 (38)
T PF02439_consen 7 AIIVAVVVGMAIII 20 (38)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444445544433
No 96
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=56.99 E-value=12 Score=28.06 Aligned_cols=9 Identities=44% Similarity=0.552 Sum_probs=3.3
Q ss_pred hhhHhhhhe
Q 008024 560 YSIDRCINT 568 (580)
Q Consensus 560 ~~~~~~~~~ 568 (580)
..+|+.++|
T Consensus 37 rkId~li~R 45 (81)
T PF00558_consen 37 RKIDRLIER 45 (81)
T ss_dssp --CHHHHHH
T ss_pred HhHHHHHHH
Confidence 444544444
No 97
>PF15102 TMEM154: TMEM154 protein family
Probab=48.60 E-value=6.3 Score=33.17 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhcccch
Q 008024 535 ASYVTVILVLIAILWINSYWRR 556 (580)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~ 556 (580)
+.++++++++++++.+.++||.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 3333444444444444455554
No 98
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=48.56 E-value=21 Score=27.29 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=17.2
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHhhcccc
Q 008024 527 VTLYSSFGASYVTVILVLIAILWINSYWR 555 (580)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (580)
.|.|++.+.|++++++++..+++.+.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 56677777777666655444444444444
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.52 E-value=12 Score=38.84 Aligned_cols=58 Identities=29% Similarity=0.265 Sum_probs=35.9
Q ss_pred CCCCCCEEEcccCCCcc---------cCCCCcEEEcccc--cccCccchHHhcCCCCCcEEEcccCcCCC
Q 008024 42 NLTSLEYLDLSHNNFEG---------EMKELSLLDLSRN--YFSGGLSQSVVTGCFSLELLDLSNNNFEG 100 (580)
Q Consensus 42 ~l~~L~~L~L~~n~l~~---------~l~~L~~L~Ls~n--~~~~~~~~~~~~~l~~L~~L~ls~n~i~~ 100 (580)
+.+.+..++|++|++.. ..|+|+.|+|++| .+...-...-+ +...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCcccc
Confidence 45666667777776553 5677888888887 33311111111 23468888888988764
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.14 E-value=13 Score=38.65 Aligned_cols=64 Identities=28% Similarity=0.213 Sum_probs=45.5
Q ss_pred cCCCCcEEEcccccccCc-cchHHhcCCCCCcEEEcccC--cCCCccccccc--CCCCCCEEEccCCcCCc
Q 008024 59 EMKELSLLDLSRNYFSGG-LSQSVVTGCFSLELLDLSNN--NFEGQFFSEYM--NLTRLRHLYFENNNFSG 124 (580)
Q Consensus 59 ~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~L~~L~ls~n--~i~~~~~~~~~--~l~~L~~L~L~~n~l~~ 124 (580)
+.+.+..++|++|++... --..+....|+|+.|+|++| .+.. ..++. +...|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 788999999999988621 12234566789999999999 4432 22232 23468999999998864
No 101
>PRK14762 membrane protein; Provisional
Probab=42.88 E-value=38 Score=18.77 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=11.8
Q ss_pred HhHHhHHHHHHHHHHHHHHH
Q 008024 529 LYSSFGASYVTVILVLIAIL 548 (580)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~ 548 (580)
+.|.+++-|.++++++.+++
T Consensus 4 ~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 4 ILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665543
No 102
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=40.64 E-value=43 Score=25.18 Aligned_cols=13 Identities=23% Similarity=0.028 Sum_probs=6.5
Q ss_pred hhhhhhhHhhhhe
Q 008024 556 RLWFYSIDRCINT 568 (580)
Q Consensus 556 ~~~~~~~~~~~~~ 568 (580)
++..+.++|..++
T Consensus 37 rkId~li~RIrer 49 (81)
T PF00558_consen 37 RKIDRLIERIRER 49 (81)
T ss_dssp --CHHHHHHHHCT
T ss_pred HhHHHHHHHHHcc
Confidence 4556666666543
No 103
>PRK00523 hypothetical protein; Provisional
Probab=39.27 E-value=48 Score=24.22 Aligned_cols=19 Identities=5% Similarity=-0.150 Sum_probs=9.3
Q ss_pred HHHHHHHHhhcccchhhhh
Q 008024 542 LVLIAILWINSYWRRLWFY 560 (580)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~ 560 (580)
+.+++.+++-+++-++|+.
T Consensus 17 ~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 17 VGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555554
No 104
>PF15179 Myc_target_1: Myc target protein 1
Probab=38.91 E-value=43 Score=29.34 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHhh
Q 008024 527 VTLYSSFGASYVTVILVLIAILWIN 551 (580)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (580)
..+.+++++|+++|.++.+.+.|..
T Consensus 23 laF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888877777766666653
No 105
>PRK01844 hypothetical protein; Provisional
Probab=36.24 E-value=55 Score=23.91 Aligned_cols=17 Identities=6% Similarity=0.088 Sum_probs=8.1
Q ss_pred HHHHHHhhcccchhhhh
Q 008024 544 LIAILWINSYWRRLWFY 560 (580)
Q Consensus 544 ~~~~~~~~~~~~~~~~~ 560 (580)
+++.+++-+++-++|+.
T Consensus 18 ~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 18 VALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555555554
No 106
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.19 E-value=27 Score=43.89 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=29.0
Q ss_pred CCCCCCCCCchhhccCCCCCcCEEEccCCCCC
Q 008024 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLN 33 (580)
Q Consensus 2 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 33 (580)
||++|+|+.+.+..|.++++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 78999999999999999999999999999765
No 107
>PF15050 SCIMP: SCIMP protein
Probab=32.83 E-value=52 Score=26.52 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=5.6
Q ss_pred HHhHHhHHHHHH
Q 008024 528 TLYSSFGASYVT 539 (580)
Q Consensus 528 ~~~~~~~~~~~~ 539 (580)
|+++++++.++.
T Consensus 9 WiiLAVaII~vS 20 (133)
T PF15050_consen 9 WIILAVAIILVS 20 (133)
T ss_pred HHHHHHHHHHHH
Confidence 455555544333
No 108
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.51 E-value=44 Score=32.44 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhcccc
Q 008024 539 TVILVLIAILWINSYWR 555 (580)
Q Consensus 539 ~~~~~~~~~~~~~~~~~ 555 (580)
+++++++.+.++.|++|
T Consensus 267 iIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444444
No 109
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.18 E-value=11 Score=32.09 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=3.5
Q ss_pred hhheeeeee
Q 008024 565 CINTWYYWL 573 (580)
Q Consensus 565 ~~~~~~~~~ 573 (580)
.-.|||..+
T Consensus 98 ~~~~w~~l~ 106 (154)
T PF04478_consen 98 LTKWWYSLL 106 (154)
T ss_pred HHHHHHHHh
Confidence 333444433
No 110
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.78 E-value=31 Score=19.30 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=7.6
Q ss_pred ccCCeEeCCCCe
Q 008024 427 KMIESLDISYNK 438 (580)
Q Consensus 427 ~~L~~LdLs~N~ 438 (580)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666663
No 111
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=30.31 E-value=36 Score=33.36 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=6.9
Q ss_pred HHHHHHHhhcccchhhh
Q 008024 543 VLIAILWINSYWRRLWF 559 (580)
Q Consensus 543 ~~~~~~~~~~~~~~~~~ 559 (580)
++++.+++.|++++..|
T Consensus 287 ivLiaYli~Rrr~~~gY 303 (306)
T PF01299_consen 287 IVLIAYLIGRRRSRAGY 303 (306)
T ss_pred HHHHhheeEeccccccc
Confidence 33333344444444434
No 112
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=28.53 E-value=62 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhhh
Q 008024 534 GASYVTVILVLIAILWINSYWRRLWFY 560 (580)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (580)
.+++.++++++++.+++.++.|+...-
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~~~~ 132 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRTKLP 132 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccCc
Confidence 344555555555666666666665543
No 113
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=27.81 E-value=20 Score=29.25 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccchhhh
Q 008024 542 LVLIAILWINSYWRRLWF 559 (580)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~ 559 (580)
.++.+++++++.+|+..|
T Consensus 93 ~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 93 ALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhhhhccccC
Confidence 333455555555555554
No 114
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.79 E-value=26 Score=31.67 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=8.9
Q ss_pred HHHhHHhHHHHHHHHHHHHH
Q 008024 527 VTLYSSFGASYVTVILVLIA 546 (580)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~ 546 (580)
..+++++++|++++++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFI 56 (221)
T ss_pred eeeeeeeecchhhhHHHHHH
Confidence 34445554555444433333
No 115
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=24.94 E-value=1.2e+02 Score=20.63 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=10.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHH
Q 008024 529 LYSSFGASYVTVILVLIAILW 549 (580)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~ 549 (580)
+++-+.++.+++++++++++|
T Consensus 4 l~~LIpiSl~l~~~~l~~f~W 24 (51)
T TIGR00847 4 LTILIPISLLLGGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555444444444
No 116
>PHA03029 hypothetical protein; Provisional
Probab=23.62 E-value=1.9e+02 Score=21.10 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=6.9
Q ss_pred cccchhhhhhhH
Q 008024 552 SYWRRLWFYSID 563 (580)
Q Consensus 552 ~~~~~~~~~~~~ 563 (580)
+.+|+-+|++++
T Consensus 46 rsrrkg~ywfln 57 (92)
T PHA03029 46 RSRRKGLYWFLN 57 (92)
T ss_pred HHHhhhHHHHHH
Confidence 455666666554
No 117
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=20.58 E-value=74 Score=26.93 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=5.5
Q ss_pred HHHHHHHHHhhc
Q 008024 541 ILVLIAILWINS 552 (580)
Q Consensus 541 ~~~~~~~~~~~~ 552 (580)
++++++++|+|+
T Consensus 23 l~cgiGcvwhwk 34 (158)
T PF11770_consen 23 LLCGIGCVWHWK 34 (158)
T ss_pred HHHhcceEEEee
Confidence 334445555543
No 118
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=20.17 E-value=1.1e+02 Score=29.13 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhHhhhheeeee----eeeeecc
Q 008024 535 ASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYW----LSKYVLC 579 (580)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 579 (580)
....++.++++.++.+..-++.++||++-...-..+.. +.++|||
T Consensus 26 stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPa 74 (305)
T PF04789_consen 26 STLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPA 74 (305)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcH
Confidence 34444555555444444445568888876554443322 5556665
Done!