Query 008024
Match_columns 580
No_of_seqs 699 out of 4823
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 16:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.7E-61 1.6E-65 533.0 31.5 493 1-499 205-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.8E-52 9.4E-57 462.7 29.6 465 17-486 197-716 (768)
3 3t6q_A CD180 antigen; protein- 100.0 5.9E-50 2E-54 434.2 33.6 458 1-492 38-565 (606)
4 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-50 2.4E-54 448.0 30.9 455 1-492 29-565 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-47 4.3E-52 421.4 34.5 482 1-492 30-627 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-48 1.6E-52 419.3 27.2 428 1-493 37-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 4.9E-47 1.7E-51 411.3 31.0 437 1-469 62-565 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 7E-47 2.4E-51 423.7 29.1 460 2-486 10-538 (844)
9 4eco_A Uncharacterized protein 100.0 1.6E-47 5.4E-52 415.1 21.4 353 59-489 204-602 (636)
10 2z63_A TOLL-like receptor 4, v 100.0 3.9E-46 1.3E-50 401.3 28.7 428 1-492 33-536 (570)
11 4eco_A Uncharacterized protein 100.0 3.7E-46 1.3E-50 404.4 24.5 204 59-267 247-470 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 5.4E-46 1.9E-50 409.5 23.7 351 59-488 446-841 (876)
13 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-44 2.3E-48 391.9 36.2 300 2-306 10-357 (680)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-44 5.4E-49 386.9 26.1 422 1-491 31-514 (549)
15 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-44 1.1E-48 389.2 28.1 405 1-469 61-563 (606)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-45 7.9E-50 390.5 18.9 424 1-492 5-486 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 8E-44 2.7E-48 392.2 28.2 344 36-468 440-844 (876)
18 2z63_A TOLL-like receptor 4, v 100.0 9.4E-44 3.2E-48 382.8 27.5 407 1-472 57-539 (570)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-43 1.4E-47 373.2 23.5 380 1-468 26-485 (520)
20 3v47_A TOLL-like receptor 5B a 100.0 1.2E-42 4.2E-47 363.3 24.5 359 20-473 30-417 (455)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-42 3.7E-47 372.6 21.4 406 1-470 55-516 (549)
22 4g8a_A TOLL-like receptor 4; l 100.0 7.3E-42 2.5E-46 372.9 28.3 430 1-493 57-586 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-42 1.5E-46 368.4 24.2 400 1-492 36-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.3E-40 4.3E-45 348.1 27.9 369 23-491 13-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-40 4.5E-45 356.9 24.9 382 1-469 57-515 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 1.7E-39 6E-44 336.9 23.0 366 1-469 16-416 (454)
27 3bz5_A Internalin-J, INLJ; leu 100.0 8.2E-39 2.8E-43 332.1 26.7 352 9-470 31-393 (457)
28 2id5_A Lingo-1, leucine rich r 100.0 1.4E-38 4.7E-43 334.5 24.5 345 65-491 15-360 (477)
29 1o6v_A Internalin A; bacterial 100.0 2E-37 6.9E-42 324.2 32.7 342 18-466 44-390 (466)
30 1o6v_A Internalin A; bacterial 100.0 9.2E-37 3.1E-41 319.2 34.5 338 1-446 51-393 (466)
31 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-37 1.1E-41 336.3 28.6 404 1-467 81-583 (635)
32 2id5_A Lingo-1, leucine rich r 100.0 1.5E-36 5E-41 319.1 28.0 347 23-469 14-361 (477)
33 3o6n_A APL1; leucine-rich repe 100.0 2E-36 6.8E-41 309.4 26.5 334 60-491 44-378 (390)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.8E-40 308.6 27.7 331 1-449 47-396 (457)
35 3oja_B Anopheles plasmodium-re 100.0 6.7E-36 2.3E-40 322.1 27.0 335 59-490 49-383 (597)
36 1jl5_A Outer protein YOPM; leu 100.0 1.1E-34 3.9E-39 300.7 30.3 362 2-469 40-434 (454)
37 1ogq_A PGIP-2, polygalacturona 100.0 7.1E-36 2.4E-40 295.2 17.7 254 161-493 52-310 (313)
38 4fmz_A Internalin; leucine ric 100.0 4E-34 1.4E-38 287.7 30.3 305 18-464 42-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 6.8E-34 2.3E-38 286.0 31.3 303 84-485 42-344 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 1E-34 3.5E-39 296.7 23.3 312 19-443 44-355 (390)
41 3oja_B Anopheles plasmodium-re 100.0 6.1E-34 2.1E-38 306.8 23.5 312 20-444 51-362 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-36 4.9E-41 317.9 -0.6 353 20-465 3-412 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-33 3.9E-38 279.3 17.7 251 135-466 51-307 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 4.7E-35 1.6E-39 306.4 4.2 353 61-487 3-411 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-32 1.3E-36 271.4 24.1 290 62-462 34-331 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 5.7E-32 2E-36 270.0 25.3 249 21-298 34-284 (332)
47 1xku_A Decorin; proteoglycan, 100.0 1.8E-31 6E-36 266.3 28.1 224 64-295 55-280 (330)
48 1xku_A Decorin; proteoglycan, 100.0 5.6E-32 1.9E-36 269.8 23.9 291 62-462 32-330 (330)
49 2z80_A TOLL-like receptor 2, v 100.0 8.5E-30 2.9E-34 256.5 15.9 207 60-294 30-238 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 2.2E-29 7.4E-34 253.5 15.6 271 19-295 30-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 9.4E-29 3.2E-33 243.8 19.4 250 137-468 10-265 (306)
52 3ogk_B Coronatine-insensitive 100.0 1E-30 3.4E-35 282.4 5.4 410 11-466 64-528 (592)
53 2z66_A Variable lymphocyte rec 100.0 9.9E-29 3.4E-33 243.6 18.1 197 90-291 11-212 (306)
54 1ozn_A Reticulon 4 receptor; N 100.0 4.2E-28 1.4E-32 236.5 21.0 225 64-293 14-240 (285)
55 1ozn_A Reticulon 4 receptor; N 100.0 6.6E-28 2.3E-32 235.1 20.3 251 137-469 14-266 (285)
56 4fcg_A Uncharacterized protein 100.0 6.2E-28 2.1E-32 239.7 19.3 223 161-464 83-314 (328)
57 3zyi_A Leucine-rich repeat-con 100.0 1.1E-27 3.7E-32 249.4 21.7 247 136-465 56-304 (452)
58 4fcg_A Uncharacterized protein 100.0 7.5E-28 2.6E-32 239.1 19.6 226 60-291 80-314 (328)
59 3zyj_A Leucine-rich repeat-con 100.0 1.1E-27 3.7E-32 248.5 21.3 247 136-465 45-293 (440)
60 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-29 4.7E-34 250.7 6.7 267 112-469 12-281 (317)
61 3ogk_B Coronatine-insensitive 100.0 4.6E-30 1.6E-34 277.2 1.6 391 17-461 109-548 (592)
62 3zyi_A Leucine-rich repeat-con 100.0 5.4E-27 1.9E-31 244.1 23.7 229 61-292 75-304 (452)
63 3g06_A SSPH2 (leucine-rich rep 100.0 5.5E-27 1.9E-31 250.3 24.2 193 63-291 42-234 (622)
64 3zyj_A Leucine-rich repeat-con 100.0 6.9E-27 2.4E-31 242.4 23.9 228 62-292 65-293 (440)
65 3g06_A SSPH2 (leucine-rich rep 100.0 1.7E-26 5.8E-31 246.5 27.2 263 86-469 40-302 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 6.7E-29 2.3E-33 245.8 5.5 255 2-288 16-272 (317)
67 1wwl_A Monocyte differentiatio 99.9 1E-28 3.4E-33 244.0 6.3 251 107-465 40-310 (312)
68 1wwl_A Monocyte differentiatio 99.9 1E-28 3.5E-33 243.9 3.8 223 63-292 65-310 (312)
69 3oja_A Leucine-rich immune mol 99.9 2.2E-27 7.5E-32 248.5 11.4 234 135-459 35-270 (487)
70 3oja_A Leucine-rich immune mol 99.9 4.4E-27 1.5E-31 246.1 9.7 237 18-286 32-270 (487)
71 2p1m_B Transport inhibitor res 99.9 6E-28 2E-32 260.8 0.5 404 13-464 59-519 (594)
72 2p1m_B Transport inhibitor res 99.9 9.7E-29 3.3E-33 267.0 -5.8 394 15-465 100-545 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 8.5E-25 2.9E-29 212.0 20.1 208 184-469 29-242 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.9E-29 211.1 18.4 170 77-268 67-238 (276)
75 1p9a_G Platelet glycoprotein I 99.9 2.4E-24 8.3E-29 209.7 17.9 203 179-464 6-208 (290)
76 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.9E-28 203.2 22.1 205 185-468 18-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 2.2E-23 7.4E-28 203.0 19.4 111 380-490 101-211 (290)
78 3rfs_A Internalin B, repeat mo 99.9 3.6E-24 1.2E-28 206.9 13.0 208 84-303 39-247 (272)
79 3rfs_A Internalin B, repeat mo 99.9 4.4E-24 1.5E-28 206.2 13.2 210 16-255 37-247 (272)
80 2o6q_A Variable lymphocyte rec 99.9 7.5E-23 2.6E-27 197.4 21.6 182 111-293 38-220 (270)
81 3goz_A Leucine-rich repeat-con 99.9 1.3E-24 4.3E-29 219.3 7.5 131 65-196 2-151 (362)
82 3goz_A Leucine-rich repeat-con 99.9 2.3E-24 7.9E-29 217.4 7.4 261 2-298 4-304 (362)
83 2ca6_A RAN GTPase-activating p 99.9 7.7E-25 2.6E-29 223.1 3.3 246 150-468 24-320 (386)
84 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.8E-28 210.3 8.7 249 135-469 48-311 (336)
85 2ca6_A RAN GTPase-activating p 99.9 2.9E-24 9.8E-29 218.9 4.1 246 15-295 27-320 (386)
86 3m19_A Variable lymphocyte rec 99.9 3.9E-22 1.3E-26 190.2 18.6 183 207-469 15-197 (251)
87 4glp_A Monocyte differentiatio 99.9 9.6E-23 3.3E-27 200.9 14.8 133 134-267 64-210 (310)
88 4glp_A Monocyte differentiatio 99.9 4.2E-23 1.4E-27 203.5 10.4 225 161-464 66-307 (310)
89 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 208.2 7.6 249 46-300 49-315 (336)
90 2xwt_C Thyrotropin receptor; s 99.9 3.9E-22 1.3E-26 188.8 14.6 182 76-263 45-235 (239)
91 2xwt_C Thyrotropin receptor; s 99.9 3E-22 1E-26 189.6 11.5 196 20-240 31-236 (239)
92 3m19_A Variable lymphocyte rec 99.9 3.2E-21 1.1E-25 183.8 18.7 180 184-442 15-194 (251)
93 1h6u_A Internalin H; cell adhe 99.9 3.4E-21 1.2E-25 189.4 19.2 192 18-243 39-230 (308)
94 1h6u_A Internalin H; cell adhe 99.9 9.2E-21 3.1E-25 186.3 18.6 192 85-292 40-231 (308)
95 4ay9_X Follicle-stimulating ho 99.9 1.1E-20 3.8E-25 189.4 18.7 241 23-289 12-257 (350)
96 4ay9_X Follicle-stimulating ho 99.8 2.9E-20 9.8E-25 186.4 16.2 238 3-265 16-257 (350)
97 3cvr_A Invasion plasmid antige 99.8 5.5E-20 1.9E-24 193.9 17.0 189 160-452 60-255 (571)
98 2o6s_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 170.0 14.8 130 161-290 30-160 (208)
99 3cvr_A Invasion plasmid antige 99.8 8.8E-20 3E-24 192.3 17.1 189 87-303 60-255 (571)
100 2o6s_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 167.8 14.1 175 65-251 11-186 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 7.6E-20 2.6E-24 170.3 10.4 91 378-468 80-170 (220)
102 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.4E-24 182.4 11.0 177 209-465 21-203 (361)
103 2v9t_B SLIT homolog 2 protein 99.8 7.2E-19 2.5E-23 163.7 14.2 85 380-464 81-165 (220)
104 2xot_A Amphoterin-induced prot 99.8 5.1E-19 1.7E-23 178.0 14.1 178 186-442 21-204 (361)
105 1h6t_A Internalin B; cell adhe 99.8 1.9E-18 6.5E-23 168.2 16.1 60 378-441 155-214 (291)
106 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.1E-23 168.9 15.0 150 83-244 65-214 (291)
107 3e6j_A Variable lymphocyte rec 99.8 2.5E-18 8.7E-23 161.1 15.5 156 232-468 21-176 (229)
108 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5E-23 185.1 13.3 171 17-219 40-210 (605)
109 3e6j_A Variable lymphocyte rec 99.8 9.5E-18 3.2E-22 157.2 16.1 157 207-444 20-176 (229)
110 4ezg_A Putative uncharacterize 99.8 2.9E-18 9.9E-23 156.8 11.6 154 227-465 41-195 (197)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 6.1E-18 2.1E-22 157.3 14.0 155 137-295 14-170 (220)
112 1m9s_A Internalin B; cell inva 99.8 9.7E-18 3.3E-22 178.8 17.2 191 88-294 23-213 (605)
113 2v9t_B SLIT homolog 2 protein 99.8 8.6E-18 2.9E-22 156.3 14.7 132 87-219 33-165 (220)
114 4ezg_A Putative uncharacterize 99.7 9.9E-18 3.4E-22 153.2 12.7 152 18-196 42-194 (197)
115 1w8a_A SLIT protein; signaling 99.7 5.2E-18 1.8E-22 154.3 8.6 114 378-491 53-166 (192)
116 1xeu_A Internalin C; cellular 99.7 1.9E-17 6.5E-22 158.5 12.0 170 19-221 18-187 (263)
117 3sb4_A Hypothetical leucine ri 99.7 4.5E-18 1.6E-22 168.8 6.5 119 19-143 24-157 (329)
118 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.1E-22 159.9 8.7 168 87-293 20-187 (263)
119 1dce_A Protein (RAB geranylger 99.7 4.8E-20 1.7E-24 195.4 -9.9 195 17-236 346-566 (567)
120 1w8a_A SLIT protein; signaling 99.7 5.7E-17 2E-21 147.4 11.3 132 233-444 11-143 (192)
121 4b8c_D Glucose-repressible alc 99.7 5.7E-18 2E-22 185.1 5.6 132 165-300 207-338 (727)
122 1dce_A Protein (RAB geranylger 99.7 1.2E-18 4.1E-23 184.7 -3.1 107 185-295 443-550 (567)
123 4b8c_D Glucose-repressible alc 99.7 2.6E-17 9E-22 179.9 5.1 181 101-291 215-404 (727)
124 2wfh_A SLIT homolog 2 protein 99.7 5E-16 1.7E-20 141.1 12.2 114 379-493 31-145 (193)
125 3sb4_A Hypothetical leucine ri 99.7 3.2E-16 1.1E-20 155.4 11.4 255 19-284 48-327 (329)
126 2ell_A Acidic leucine-rich nuc 99.6 3.3E-16 1.1E-20 139.1 9.6 88 378-465 70-161 (168)
127 4fdw_A Leucine rich hypothetic 99.6 5.5E-15 1.9E-19 149.8 18.7 257 19-290 112-382 (401)
128 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 8.9E-20 136.3 12.8 87 379-465 54-140 (193)
129 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 132.8 10.0 81 379-459 64-148 (149)
130 2ell_A Acidic leucine-rich nuc 99.6 2.7E-15 9.2E-20 133.2 11.2 131 160-291 25-160 (168)
131 2o6r_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 133.7 11.8 90 379-468 52-141 (177)
132 2o6r_A Variable lymphocyte rec 99.6 8.6E-15 2.9E-19 131.1 12.9 114 20-151 28-141 (177)
133 2je0_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 129.3 10.0 127 160-287 18-149 (149)
134 4fs7_A Uncharacterized protein 99.6 3.4E-14 1.2E-18 144.5 17.8 227 8-263 59-285 (394)
135 4fdw_A Leucine rich hypothetic 99.6 1E-13 3.4E-18 140.5 19.8 214 60-285 112-330 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.4E-19 129.8 9.7 87 377-465 62-154 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6.1E-21 144.9 -4.3 81 379-463 93-184 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 8.8E-19 127.9 9.6 127 14-145 13-151 (176)
139 3g39_A Variable lymphocyte rec 99.5 4.3E-14 1.5E-18 125.4 9.5 108 381-491 11-119 (170)
140 2r9u_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 123.8 9.6 107 382-491 15-122 (174)
141 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 122.3 10.2 92 379-470 30-121 (170)
142 4fs7_A Uncharacterized protein 99.5 9.7E-13 3.3E-17 133.7 17.5 315 76-461 61-376 (394)
143 2r9u_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 119.8 10.3 91 379-469 33-123 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 1.9E-15 6.6E-20 138.0 -6.5 84 85-172 17-106 (198)
145 4gt6_A Cell surface protein; l 99.4 1.6E-11 5.6E-16 124.7 21.1 338 9-463 52-390 (394)
146 2ifg_A High affinity nerve gro 99.4 9.6E-13 3.3E-17 131.5 9.8 108 383-492 12-121 (347)
147 3un9_A NLR family member X1; l 99.3 8.4E-14 2.9E-18 139.7 -0.7 154 44-198 72-254 (372)
148 3un9_A NLR family member X1; l 99.3 3.6E-13 1.2E-17 135.1 2.2 185 42-227 45-260 (372)
149 4gt6_A Cell surface protein; l 99.2 1.7E-09 5.9E-14 109.7 21.8 300 76-463 53-369 (394)
150 2ifg_A High affinity nerve gro 99.1 1.5E-10 5.1E-15 115.4 11.4 105 23-148 11-117 (347)
151 4h09_A Hypothetical leucine ri 99.0 3.8E-08 1.3E-12 99.2 21.3 72 378-451 285-356 (379)
152 4h09_A Hypothetical leucine ri 99.0 6.4E-08 2.2E-12 97.5 22.0 285 76-461 59-343 (379)
153 2ra8_A Uncharacterized protein 98.9 8.2E-10 2.8E-14 109.7 7.0 166 222-462 164-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.1E-09 3.8E-14 108.7 4.6 81 14-94 133-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1.8E-08 6.2E-13 90.2 3.6 43 249-291 31-78 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 2.3E-08 8E-13 89.5 3.6 116 15-147 31-164 (185)
157 3rw6_A Nuclear RNA export fact 98.5 1.2E-07 4.2E-12 89.1 5.7 67 400-468 167-237 (267)
158 3rw6_A Nuclear RNA export fact 98.4 1.2E-07 4.1E-12 89.2 3.1 79 377-457 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 5E-07 1.7E-11 78.7 2.2 84 379-462 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 5.9E-06 2E-10 71.9 3.9 33 161-193 116-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.7E-05 9.3E-10 69.1 3.8 62 85-146 97-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00024 8.2E-09 63.0 6.0 87 84-171 68-169 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.00093 3.2E-08 55.2 5.4 56 383-440 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.8E-08 54.7 5.1 54 406-461 11-65 (130)
165 2lz0_A Uncharacterized protein 72.6 4.4 0.00015 31.0 4.4 50 4-54 4-53 (100)
166 2k1k_A Ephrin type-A receptor 72.5 4.2 0.00014 24.7 3.3 22 530-551 13-34 (38)
167 2l9u_A Receptor tyrosine-prote 55.0 14 0.00049 21.4 3.1 23 530-552 9-31 (40)
168 2k9y_A Ephrin type-A receptor 45.8 19 0.00066 22.0 3.0 9 530-538 16-24 (41)
169 2lz0_A Uncharacterized protein 41.1 33 0.0011 26.0 4.4 39 223-262 13-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-61 Score=533.02 Aligned_cols=493 Identities=34% Similarity=0.509 Sum_probs=347.8
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-----cCCCCcEEEcccccccC
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLDLSRNYFSG 75 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n~~~~ 75 (580)
|+|++|.+++.++. ++++++|++|++++|.+++..|..|.++++|++|++++|.+++ .+++|++|++++|.+++
T Consensus 205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 283 (768)
T ss_dssp EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEE
T ss_pred EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCC
Confidence 57888999887776 8999999999999999998889999999999999999998876 57889999999999998
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCcccccc-ccCCCcccEEecccCcCCCCChhHH
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG-LLSSTSLQVLDISNNMLSGHIPHWM 154 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~ 154 (580)
.+|..++..+++|++|++++|.+++..|..++++++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|..+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 888887666689999999999998888999999999999999999998777765 8889999999999999988888888
Q ss_pred hhccCCCcEEEeecCcCCCc--------------------------cCccCCCCCCCCEEEccCCCCCCccccCc-CCCC
Q 008024 155 GNFSSELEILSMSKNHLEGN--------------------------VPVQLNNLERLRILDISENRLSGPIASSL-NLSS 207 (580)
Q Consensus 155 ~~~~~~L~~L~l~~n~l~~~--------------------------~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~ 207 (580)
..++.+|++|++++|.+++. +|..+..+++|+.|++++|.+++..+..+ .+++
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 443 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC
Confidence 77663366666666665544 44445555555555555555554444433 4555
Q ss_pred ccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcC
Q 008024 208 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 287 (580)
Q Consensus 208 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 287 (580)
|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.++..+++|++|++++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 66666666666555555565566666666666666655666666666666666666666666666666666666666666
Q ss_pred CcccccCChhhhcccccccc--cCCcccccCCCCcc-ccchhccCCCC--------CCCCCccc----------cchhhh
Q 008024 288 NKFSGSIPPCFANVLSWRVG--SDDVLNGSKLNSPE-LDEEIEFGSLG--------NNRSSNTM----------FGMWRW 346 (580)
Q Consensus 288 N~l~~~~p~~~~~l~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~----------~~~~~~ 346 (580)
|++++.+|..+..++.++.. ..+.+.+..+.... ........... ........ ......
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh
Confidence 66666666666555544432 22333222211000 00000000000 00000000 000000
Q ss_pred hhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCc
Q 008024 347 LSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL 426 (580)
Q Consensus 347 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 426 (580)
+..+...... .. ......+. .......+++|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++
T Consensus 604 ~~~l~~~~~~--~l-~~~~~~g~-~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 604 LNRLSTRNPC--NI-TSRVYGGH-TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp GGGGGGTCCS--CT-TSCEEEEE-CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred hhcccccccc--cc-ccceeccc-CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 0000000000 00 00000000 01112457889999999999999999999999999999999999999999999999
Q ss_pred ccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccccCCcccCCCcCCCCccccCCCCCC
Q 008024 427 KMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRT 499 (580)
Q Consensus 427 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~l~~~~~~~ 499 (580)
++|++|||++|+++|.+|..+..+++|++||+++|+++|.||+.++|.++...+|.|||++||.++. .|...
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999876 77543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-52 Score=462.74 Aligned_cols=465 Identities=28% Similarity=0.397 Sum_probs=274.3
Q ss_pred CCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccccCccchHHhcCCCCCc
Q 008024 17 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYFSGGLSQSVVTGCFSLE 89 (580)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~ 89 (580)
.++++|++|++++|.+++.+|. ++++++|++|++++|.+++ .+++|++|++++|.+++.+|.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCC
Confidence 3445555555555555544444 5555555555555555553 4555555666555555544442 455666
Q ss_pred EEEcccCcCCCcccccccCC-CCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhH-HhhccCCCcEEEee
Q 008024 90 LLDLSNNNFEGQFFSEYMNL-TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMS 167 (580)
Q Consensus 90 ~L~ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~ 167 (580)
+|++++|.+++.+|..+.+. ++|++|++++|.+++..|..+..+++|++|++++|.+++.+|.. +..++. |++|+++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~-L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG-LKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT-CCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC-CCEEeCc
Confidence 66666666655566655554 66777777777766666666777777777777777766666654 556655 7777777
Q ss_pred cCcCCCccCccCCCCC-CCCEEEccCCCCCCccccCc-C--CCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccc
Q 008024 168 KNHLEGNVPVQLNNLE-RLRILDISENRLSGPIASSL-N--LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243 (580)
Q Consensus 168 ~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~-~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (580)
+|++++.+|..+..++ +|++|++++|.+++..+... . +++|++|++++|.+++.+|..+..+++|++|++++|+++
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 7777666666666555 66666666666654443333 2 556666666666666666666666666667777666666
Q ss_pred ccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccc--cCCcccccCCCCcc
Q 008024 244 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG--SDDVLNGSKLNSPE 321 (580)
Q Consensus 244 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~--~~~~~~~~~~~~~~ 321 (580)
+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++.++.. ..+.+.+..+....
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 6666666666666666666666666666666666666666666666666666666665555442 22222221111000
Q ss_pred ccchhccCCCCCCCCCccccchhhhhhhhhhhhc--------cccc---------------hhheeecccc---------
Q 008024 322 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA--------IDER---------------VEIEFAMKNR--------- 369 (580)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~---------------~~~~~~~~~~--------- 369 (580)
.........+..+.........+..+..++.... .+.. ..........
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 0000000111111100000000000000000000 0000 0000000000
Q ss_pred -ceee------cccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeec
Q 008024 370 -YEIY------NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 442 (580)
Q Consensus 370 -~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 442 (580)
...+ ....++.+..++++.|.+.|.+|..++.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence 0000 001122233344444555555555666678899999999999999999999999999999999999999
Q ss_pred CccccccCCcCCeeeCcCCcccccCCCC-CcccccCCcccCCCcC
Q 008024 443 IPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDESSYRGNPS 486 (580)
Q Consensus 443 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gN~~ 486 (580)
+|..+..+++|++|||++|+++|.+|.. ..+..++...+.+|+.
T Consensus 672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 9999999999999999999999999974 5566777778888873
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.9e-50 Score=434.18 Aligned_cols=458 Identities=20% Similarity=0.182 Sum_probs=370.2
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.|++..+..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++ .+++|++|++++|.+
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence 5899999999999999999999999999999998889999999999999999998875 689999999999999
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCccc--EEecccCcCCCCCh
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ--VLDISNNMLSGHIP 151 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~~~~p 151 (580)
++ ++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++..|
T Consensus 118 ~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 118 SS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp SC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred cc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 84 4444468899999999999999976555666699999999999999988888899999999 89999999886544
Q ss_pred hHHhhc-------------------------------------------------c-CCCcEEEeecCcCCCccCccCCC
Q 008024 152 HWMGNF-------------------------------------------------S-SELEILSMSKNHLEGNVPVQLNN 181 (580)
Q Consensus 152 ~~~~~~-------------------------------------------------~-~~L~~L~l~~n~l~~~~~~~~~~ 181 (580)
..+... . .+|+.|++++|.+++..+..+..
T Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 276 (606)
T 3t6q_A 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276 (606)
T ss_dssp TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT
T ss_pred hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcc
Confidence 433210 0 13788899999999888888999
Q ss_pred CCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCc-cccCCCCccEEE
Q 008024 182 LERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH-QINEHSNLRFLL 260 (580)
Q Consensus 182 l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~ 260 (580)
+++|++|++++|.++..+.....+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 9999999999999986665555889999999999999988888899999999999999998866654 488899999999
Q ss_pred cCCCcCCCCC--hhhhcCCCCCCEEECcCCcccccCChhhhccccccccc--CCcccccCCCCccccchhccCCCCCCCC
Q 008024 261 LGGNHLQGPI--PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGS--DDVLNGSKLNSPELDEEIEFGSLGNNRS 336 (580)
Q Consensus 261 L~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (580)
+++|.+++.. +..+..+++|++|++++|++.+..|..+..++.++... .+.+.+....
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------ 418 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ------------------ 418 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC------------------
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc------------------
Confidence 9999998655 67788999999999999999988888887776665432 2222111110
Q ss_pred Cccccchhhhhhhhhhhhccccchhheeeccccce--eecccccccccEEEccCCcCccc---CChhhhccccCCeeeCc
Q 008024 337 SNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE--IYNGSNVNRVTGLDLSCNQLTGE---IPSDIGQLQAILALNLS 411 (580)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls 411 (580)
..+..+..++. +.+..+.... ......+++|+.|++++|.+++. .+..+..+++|++|+|+
T Consensus 419 -----~~~~~l~~L~~---------L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 419 -----SPFQNLHLLKV---------LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp -----CTTTTCTTCCE---------EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred -----hhhhCcccCCE---------EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 00000000000 0000000000 01124578999999999999863 33678999999999999
Q ss_pred CCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCC-CcccccCCcccCCCcCCCCc
Q 008024 412 NNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDESSYRGNPSLCAW 490 (580)
Q Consensus 412 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gN~~lc~~ 490 (580)
+|++++..|..|+.+++|++|||++|++++..|..+..++.| +|++++|++++.+|.. ..+..++...+.|||+.|+|
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 999998889999999999999999999999999999999999 9999999999888864 55677788899999999988
Q ss_pred cc
Q 008024 491 LI 492 (580)
Q Consensus 491 ~l 492 (580)
+.
T Consensus 564 ~~ 565 (606)
T 3t6q_A 564 SN 565 (606)
T ss_dssp GG
T ss_pred Cc
Confidence 74
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-50 Score=448.01 Aligned_cols=455 Identities=21% Similarity=0.232 Sum_probs=286.4
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCC-CcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSL-PSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNY 72 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~ 72 (580)
|||++|.|++..+..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+++ .+++|++|+|++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 578999999988899999999999999998655454 7889999999999999998875 68889999999999
Q ss_pred ccCccchH-HhcCCCCCcEEEcccCcCCCccc-ccccCCCCCCEEEccCCcCCccccccccCC--CcccEEecccCcCCC
Q 008024 73 FSGGLSQS-VVTGCFSLELLDLSNNNFEGQFF-SEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNNMLSG 148 (580)
Q Consensus 73 ~~~~~~~~-~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~ 148 (580)
+++.+|.. .+.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|+++.|.+.+
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 88755543 46788899999999998887654 578889999999999998887766666554 555555555555554
Q ss_pred CChhHHhhccC-----CCcEEEeecCcCCCccCccCC------------------------------------C--CCCC
Q 008024 149 HIPHWMGNFSS-----ELEILSMSKNHLEGNVPVQLN------------------------------------N--LERL 185 (580)
Q Consensus 149 ~~p~~~~~~~~-----~L~~L~l~~n~l~~~~~~~~~------------------------------------~--l~~L 185 (580)
..|..++.++. .|+.|++++|.+++..+..+. . .++|
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L 268 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence 44332222110 144444444443322221111 0 1344
Q ss_pred CEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCC
Q 008024 186 RILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 264 (580)
Q Consensus 186 ~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 264 (580)
+.|++++|.+.+..+..+ .+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 444444444444333333 4444444444444444444444444444444444444444444444444444444444444
Q ss_pred cCCCCChhhhcCCCCCCEEECcCCcccc------------------cCChhhhcccccccccCCcccccCCCCccccchh
Q 008024 265 HLQGPIPDQLCQLQKLAMMDLSRNKFSG------------------SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEI 326 (580)
Q Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (580)
.+.+..+..+..+++|++|++++|.+++ .+|.....+..+.. +.+.+.+.... .
T Consensus 349 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~l-s~N~l~~l~~~-------~ 420 (844)
T 3j0a_A 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL-SENRLENLDIL-------Y 420 (844)
T ss_dssp CCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEEC-CSCCCCSSTTH-------H
T ss_pred CCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeec-ccCccccCchh-------h
Confidence 4444444444444444444444444432 33333222222222 22222211000 0
Q ss_pred ccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccce---eecccccccccEEEccCCcCc-----ccCChh
Q 008024 327 EFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE---IYNGSNVNRVTGLDLSCNQLT-----GEIPSD 398 (580)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~ 398 (580)
....+.. ++ .+.+..+.... ......+++|+.|+|++|.++ +..+..
T Consensus 421 ~~~~l~~----------------L~---------~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 421 FLLRVPH----------------LQ---------ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp HHTTCTT----------------CC---------EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred hhhcCCc----------------cc---------eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 0000000 00 00011100000 001134688999999999997 445567
Q ss_pred hhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccccCC
Q 008024 399 IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 478 (580)
Q Consensus 399 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 478 (580)
|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. |..+..
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~ 551 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSV 551 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCE
Confidence 88999999999999999998999999999999999999999987777666 89999999999999999864 567788
Q ss_pred cccCCCcCCCCccc
Q 008024 479 SSYRGNPSLCAWLI 492 (580)
Q Consensus 479 ~~~~gN~~lc~~~l 492 (580)
..+.|||+.|+|++
T Consensus 552 l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 552 LDITHNKFICECEL 565 (844)
T ss_dssp EEEEEECCCCSSSC
T ss_pred EEecCCCccccccc
Confidence 88999999998875
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-47 Score=421.44 Aligned_cols=482 Identities=21% Similarity=0.227 Sum_probs=315.1
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|+|++|.+++ .+++|++|++++|.+
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 5789999999888889999999999999999998888889999999999999998775 678899999999998
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCcccccccc--CCCcccEEecccCcCCCCCh
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL--SSTSLQVLDISNNMLSGHIP 151 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~p 151 (580)
+ .++...+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|
T Consensus 110 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 110 Q-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp C-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred C-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 7 55555567889999999999999888888888899999999999988866665543 45778888888887775544
Q ss_pred hHHhh---------------------------------------------------cc-CCCcEEEeecCcCCCccCccC
Q 008024 152 HWMGN---------------------------------------------------FS-SELEILSMSKNHLEGNVPVQL 179 (580)
Q Consensus 152 ~~~~~---------------------------------------------------~~-~~L~~L~l~~n~l~~~~~~~~ 179 (580)
..+.. +. .+|+.|++++|++++..|..+
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~ 268 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc
Confidence 43322 11 125555555555555555555
Q ss_pred CCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCC-----CCcc----cccCCCCCCEEEcccCcccccCCcc
Q 008024 180 NNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNG-----LIPG----ELFRSCKLVTLNLRDNTFSGRIPHQ 249 (580)
Q Consensus 180 ~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~-----~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (580)
+.+++|++|++++|.+.+..+..+ ++++|+.|++++|...+ .+|. .+..+++|++|++++|.+++..+..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 566666666666665554433222 33333333333222111 0111 3334455555555566655555544
Q ss_pred ccCCCCc----------------------------cEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCC-hhhhc
Q 008024 250 INEHSNL----------------------------RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP-PCFAN 300 (580)
Q Consensus 250 ~~~~~~L----------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~ 300 (580)
+..+++| +.|++++|++++..|..+..+++|+.|++++|.+++.+| ..+..
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 5444444 444445555665667778888999999999999887666 56666
Q ss_pred ccccccc--cCCcccccCCCCccccchhccCCCCCCCCC--ccccchhhhhhhhhhhhccccchhheeecccccee--ec
Q 008024 301 VLSWRVG--SDDVLNGSKLNSPELDEEIEFGSLGNNRSS--NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI--YN 374 (580)
Q Consensus 301 l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 374 (580)
+..++.. +.+.+.+................+..+... ......+..+..++. +.+..+..... ..
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~---------L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI---------LDLSNNNIANINDDM 499 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE---------EECCSSCCCCCCTTT
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE---------EECCCCCCCcCChhh
Confidence 6655542 222221111100000000001111111100 000011111111111 11111111111 11
Q ss_pred ccccccccEEEccCCcCcccCC--------hhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccc
Q 008024 375 GSNVNRVTGLDLSCNQLTGEIP--------SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 446 (580)
Q Consensus 375 ~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 446 (580)
...+++|+.|++++|++++..+ ..+.++++|++|+|++|+++...+..|.++++|+.|||++|++++..+..
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence 2457889999999999985422 23788999999999999999555567999999999999999999777777
Q ss_pred cccCCcCCeeeCcCCcccccCCCC-C-cccccCCcccCCCcCCCCccc
Q 008024 447 LTALNFLSIFNVSYNNLSGRTPDK-G-QFATFDESSYRGNPSLCAWLI 492 (580)
Q Consensus 447 l~~l~~L~~L~Ls~N~l~~~~p~~-~-~~~~~~~~~~~gN~~lc~~~l 492 (580)
|..+++|++|++++|++++.+|.. . .+..+....+.||||.|+|..
T Consensus 580 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 899999999999999999887763 2 567788889999999999874
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-48 Score=419.25 Aligned_cols=428 Identities=17% Similarity=0.142 Sum_probs=333.4
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.+++..+..|+++++|++|++++|.+++..|.+|.++++|++|+|++|.+++ .+++|++|++++|.+
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 5788888888888888888999999999888887778888888889999998888775 678888888888888
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCC-cccccccCCCCCCEEEccCCcCCccccccccCCCccc----EEecccCcCCC
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ----VLDISNNMLSG 148 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~l~~ 148 (580)
+ .++...++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..+..+..+++|+ +|++++|.+++
T Consensus 117 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 117 A-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp C-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred c-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce
Confidence 7 4443346788888888888888875 4578888888888888888888766665554444332 44444444431
Q ss_pred CChhH---------------------------------------------------------------------------
Q 008024 149 HIPHW--------------------------------------------------------------------------- 153 (580)
Q Consensus 149 ~~p~~--------------------------------------------------------------------------- 153 (580)
++..
T Consensus 196 -~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 274 (606)
T 3vq2_A 196 -IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274 (606)
T ss_dssp -ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTC
T ss_pred -eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccc
Confidence 1111
Q ss_pred ------HhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCccccc
Q 008024 154 ------MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 227 (580)
Q Consensus 154 ------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 227 (580)
+..++. |+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+.. .+++|++|++++|...+.. .+.
T Consensus 275 ~~~~~~~~~l~~-L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~~-~l~~L~~L~l~~n~~~~~~--~~~ 347 (606)
T 3vq2_A 275 SDDIVKFHCLAN-VSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPTL-DLPFLKSLTLTMNKGSISF--KKV 347 (606)
T ss_dssp CGGGGSCGGGTT-CSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCCC-CCSSCCEEEEESCSSCEEC--CCC
T ss_pred cccccccccCCC-CCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccccC-CCCccceeeccCCcCccch--hhc
Confidence 222333 666777777765 345 6788899999999999994 55555 8999999999999655433 567
Q ss_pred CCCCCCEEEcccCccccc--CCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCC-hhhhccccc
Q 008024 228 RSCKLVTLNLRDNTFSGR--IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP-PCFANVLSW 304 (580)
Q Consensus 228 ~~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l 304 (580)
.+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..++.+
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 889999999999999865 47888899999999999999884 66788899999999999999988777 566666554
Q ss_pred ccccC--CcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeeccccccccc
Q 008024 305 RVGSD--DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 382 (580)
Q Consensus 305 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 382 (580)
+.... +.+.+... .....+++|+
T Consensus 427 ~~L~l~~n~l~~~~~-------------------------------------------------------~~~~~l~~L~ 451 (606)
T 3vq2_A 427 LYLDISYTNTKIDFD-------------------------------------------------------GIFLGLTSLN 451 (606)
T ss_dssp CEEECTTSCCEECCT-------------------------------------------------------TTTTTCTTCC
T ss_pred CEEECcCCCCCccch-------------------------------------------------------hhhcCCCCCC
Confidence 43211 11000000 0013568999
Q ss_pred EEEccCCcCcc-cCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCC
Q 008024 383 GLDLSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 461 (580)
Q Consensus 383 ~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 461 (580)
.|++++|.+++ .+|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 99999999997 47889999999999999999999999999999999999999999999989999999999999999999
Q ss_pred cccccCCCCCccc-ccCCcccCCCcCCCCcccc
Q 008024 462 NLSGRTPDKGQFA-TFDESSYRGNPSLCAWLIQ 493 (580)
Q Consensus 462 ~l~~~~p~~~~~~-~~~~~~~~gN~~lc~~~l~ 493 (580)
+++..++....+. .+....+.|||+.|+|++.
T Consensus 532 ~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 532 RIETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CCCCEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred cCcccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9995444434444 4777889999999998764
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.9e-47 Score=411.27 Aligned_cols=437 Identities=22% Similarity=0.203 Sum_probs=335.9
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.++++.|.+|+++++|++|+|++|++++..|..|+++++|++|++++|.+++ .+++|++|++++|.+
T Consensus 62 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred EECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence 5799999999999999999999999999999998889999999999999999999885 688999999999999
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCC--EEEccCCcCCccccccccCC------------------
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR--HLYFENNNFSGKIKDGLLSS------------------ 133 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~l~~l------------------ 133 (580)
++.....+ .++++|++|++++|.+++..+..+..+++|+ +|++++|.+++..|..+...
T Consensus 142 ~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 220 (606)
T 3t6q_A 142 SSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220 (606)
T ss_dssp CCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHH
T ss_pred cccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhh
Confidence 85322333 3489999999999999988888899999999 89999999886665544321
Q ss_pred ---------------------------------CcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCC
Q 008024 134 ---------------------------------TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 180 (580)
Q Consensus 134 ---------------------------------~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 180 (580)
.+|+.|++++|.+++..+..+..++. |++|++++|+++ .+|..+.
T Consensus 221 ~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~-~lp~~l~ 298 (606)
T 3t6q_A 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-LQELDLTATHLS-ELPSGLV 298 (606)
T ss_dssp HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTT-CSEEECTTSCCS-CCCSSCC
T ss_pred hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccC-CCEEeccCCccC-CCChhhc
Confidence 15777788888887666666777776 888888888888 6777788
Q ss_pred CCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcc-cccCCCCCCEEEcccCcccccC--CccccCCCCc
Q 008024 181 NLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPG-ELFRSCKLVTLNLRDNTFSGRI--PHQINEHSNL 256 (580)
Q Consensus 181 ~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L 256 (580)
.+++|++|++++|.+.+..+..+ .+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+..+++|
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence 88888888888888887666444 788888888888887755544 4777888888888888887654 6677888888
Q ss_pred cEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChh-hhccccccccc--CCcccccCCCCccccchhccCCCCC
Q 008024 257 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC-FANVLSWRVGS--DDVLNGSKLNSPELDEEIEFGSLGN 333 (580)
Q Consensus 257 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (580)
++|++++|.+.+..|..+..+++|++|++++|++++..|.. +..++.++... .+.+.+..... +..+..
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~ 450 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL--------FDGLPA 450 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT--------TTTCTT
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH--------HhCCCC
Confidence 88888888887777778888888888888888887665543 55555554421 22211111100 000000
Q ss_pred CCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCC
Q 008024 334 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN 413 (580)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 413 (580)
.....+... ...- ...........+++|+.|++++|++++..|..++.+++|++|+|++|
T Consensus 451 L~~L~L~~n----------------~l~~----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 451 LQHLNLQGN----------------HFPK----GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CCEEECTTC----------------BCGG----GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCC----------------CCCc----cccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 000000000 0000 00000011245789999999999999988999999999999999999
Q ss_pred ccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCC
Q 008024 414 SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 414 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 469 (580)
++++..|..+.++++| .|||++|++++.+|..+..+++|+.+++++|++++..+.
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999 999999999999999999999999999999999986664
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7e-47 Score=423.67 Aligned_cols=460 Identities=20% Similarity=0.159 Sum_probs=356.4
Q ss_pred CCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc--------cCCCCcEEEcccccc
Q 008024 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG--------EMKELSLLDLSRNYF 73 (580)
Q Consensus 2 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--------~l~~L~~L~Ls~n~~ 73 (580)
|.++++++.++ . -.++|++|||++|.+++..|..|.++++|++|+|++|...+ .+++|++|+|++|.+
T Consensus 10 dcs~~~L~~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 10 FYRFCNLTQVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EESCCCSSCCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EccCCCCCCCC-C---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 34677788744 3 45799999999999998889999999999999999995432 789999999999999
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCCccccc--ccCCCCCCEEEccCCcCCcccc-ccccCCCcccEEecccCcCCCCC
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSE--YMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQVLDISNNMLSGHI 150 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 150 (580)
++..|. .+.++++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ ..+.++++|++|++++|.+++..
T Consensus 86 ~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 86 YFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred cccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 954454 4688999999999999999866655 8999999999999999987654 67999999999999999999888
Q ss_pred hhHHhhc--cCCCcEEEeecCcCCCccCccCCCCCC------CCEEEccCCCCCCccccCc-------------------
Q 008024 151 PHWMGNF--SSELEILSMSKNHLEGNVPVQLNNLER------LRILDISENRLSGPIASSL------------------- 203 (580)
Q Consensus 151 p~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~ls~n~l~~~~~~~~------------------- 203 (580)
+..+..+ +. |+.|+++.|.+.+..|..+..+.+ |+.|++++|.+++..+..+
T Consensus 165 ~~~l~~l~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 EHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp SGGGHHHHHCS-SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHHcccccCCc-cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 8888876 55 999999999999888887777665 9999999997765333211
Q ss_pred --------------------CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCC
Q 008024 204 --------------------NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 263 (580)
Q Consensus 204 --------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 263 (580)
..++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 136899999999999988888999999999999999999988899999999999999999
Q ss_pred CcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccc--cCCcccccCCCCccccchhccCCCCCCCCCcccc
Q 008024 264 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG--SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 341 (580)
Q Consensus 264 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (580)
|.+++..|..+..+++|+.|++++|.+.+..+..+..++.++.. ..+.+.+... .+.+ ....+..+....++.
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~L----~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-IPSI----PDIFLSGNKLVTLPK 398 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-CCSC----SEEEEESCCCCCCCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-CCCc----chhccCCCCcccccc
Confidence 99998889999999999999999999988777778777766653 2222221110 0111 000111111111111
Q ss_pred chhhhhhhhhhhhccccchhheeeccccc---eeecccccccccEEEccCCcCcccCCh-hhhccccCCeeeCcCCccc-
Q 008024 342 GMWRWLSALEKRAAIDERVEIEFAMKNRY---EIYNGSNVNRVTGLDLSCNQLTGEIPS-DIGQLQAILALNLSNNSLS- 416 (580)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~- 416 (580)
.. ..+ ..+.+..+... .......+++|+.|+|++|++++..+. .+..+++|+.|+|++|.++
T Consensus 399 ~~----~~l---------~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 399 IN----LTA---------NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp CC----TTC---------CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred cc----ccc---------ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 10 000 00000000000 001113578999999999999865443 3566899999999999997
Q ss_pred ----cccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccccCCcccCCCcC
Q 008024 417 ----GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPS 486 (580)
Q Consensus 417 ----~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gN~~ 486 (580)
+..|..|.++++|+.|||++|++++.+|..+..+++|+.|+|++|++++.+|.... ..++...+.+|..
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 44556789999999999999999999999999999999999999999987776433 5555555666553
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-47 Score=415.09 Aligned_cols=353 Identities=20% Similarity=0.264 Sum_probs=301.6
Q ss_pred cCCCCcEEEcccccccCc-----------------cchHHh-cCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCC
Q 008024 59 EMKELSLLDLSRNYFSGG-----------------LSQSVV-TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 120 (580)
Q Consensus 59 ~l~~L~~L~Ls~n~~~~~-----------------~~~~~~-~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n 120 (580)
++++|++|+|++|.+++. +|..+. .++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 678899999999999874 787752 27999999999999999999999999999999999999
Q ss_pred c-CCc-cccccccCC------CcccEEecccCcCCCCChh--HHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEc
Q 008024 121 N-FSG-KIKDGLLSS------TSLQVLDISNNMLSGHIPH--WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDI 190 (580)
Q Consensus 121 ~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~p~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 190 (580)
+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++.++. |++|++++|+++|.+| .+..+++|++|++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-LGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-CCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-CCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 8 988 789888876 99999999999999 8998 8999987 9999999999998888 8999999999999
Q ss_pred cCCCCCCccccCcCCCC-ccEEEcccCCCCCCCcccccCCC--CCCEEEcccCcccccCCcccc-------CCCCccEEE
Q 008024 191 SENRLSGPIASSLNLSS-VEHLSLQKNALNGLIPGELFRSC--KLVTLNLRDNTFSGRIPHQIN-------EHSNLRFLL 260 (580)
Q Consensus 191 s~n~l~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~ 260 (580)
++|.++..+.....+++ |++|++++|.++ .+|..+...+ +|+.|++++|++++..|..+. .+++|++|+
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 99999854444448888 999999999999 6787777654 899999999999999998888 788999999
Q ss_pred cCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccc
Q 008024 261 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 340 (580)
Q Consensus 261 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (580)
+++|.+++..+..+..+++|++|++++|+++ .+|........
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~------------------------------------- 481 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN------------------------------------- 481 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-------------------------------------
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-------------------------------------
Confidence 9999999555555667999999999999998 55543211100
Q ss_pred cchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhh--ccccCCeeeCcCCccccc
Q 008024 341 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG--QLQAILALNLSNNSLSGS 418 (580)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ 418 (580)
.....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++
T Consensus 482 --------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 482 --------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp --------------------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred --------------------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence 00023458899999999999 7888887 89999999999999996
Q ss_pred cchhhhCcccCCeEeC------CCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccccCCcccCCCcCCCC
Q 008024 419 IPESFSNLKMIESLDI------SYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCA 489 (580)
Q Consensus 419 ~p~~~~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~ 489 (580)
+|..+.++++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|..- +..+....+.+|+..|-
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 8989999999999999 56788889999999999999999999999 6777652 36778888999998873
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-46 Score=401.30 Aligned_cols=428 Identities=19% Similarity=0.204 Sum_probs=345.1
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.+++..+.+|.++++|++|+|++|++++..+.+|+++++|++|+|++|.+++ .+++|++|++++|.+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 5788999999888899999999999999999988778889999999999999998764 678899999999998
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCC-cccccccCCCCCCEEEccCCcCCccccccccCCCcc----cEEecccCcCCC
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL----QVLDISNNMLSG 148 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~ 148 (580)
+ .++...++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..+..+++| +.|++++|.+++
T Consensus 113 ~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 113 A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp C-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred c-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 8 4555446788999999999998886 368888999999999999999987777778877777 788999888885
Q ss_pred CChhHHhhccCCCcEEEeecC----------------------------------------------------------c
Q 008024 149 HIPHWMGNFSSELEILSMSKN----------------------------------------------------------H 170 (580)
Q Consensus 149 ~~p~~~~~~~~~L~~L~l~~n----------------------------------------------------------~ 170 (580)
..|..+... . |+.|++++| .
T Consensus 192 ~~~~~~~~~-~-L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 192 IQPGAFKEI-R-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp ECTTTTTTC-E-EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred cCHHHhccC-c-ceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence 555544433 3 677766665 3
Q ss_pred CCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccc
Q 008024 171 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI 250 (580)
Q Consensus 171 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (580)
+.+..+..+..+++|+.|++++|.+.+.+.....+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+.
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-- 343 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-- 343 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--
T ss_pred hhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--
Confidence 33445667778899999999999988655555566 9999999999998 4454 4678899999999998866554
Q ss_pred cCCCCccEEEcCCCcCCCCC--hhhhcCCCCCCEEECcCCcccccCChhhhcccccccccC--CcccccCCCCccccchh
Q 008024 251 NEHSNLRFLLLGGNHLQGPI--PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD--DVLNGSKLNSPELDEEI 326 (580)
Q Consensus 251 ~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~ 326 (580)
..+++|++|++++|.+++.. |..+..+++|++|++++|.+.+..+. +..++.++.... +.+.+..
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~---------- 412 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS---------- 412 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT----------
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc----------
Confidence 67899999999999988543 67888999999999999998865443 555544433111 0000000
Q ss_pred ccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCC
Q 008024 327 EFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL 406 (580)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 406 (580)
.......+++|+.|++++|.+.+..|..+..+++|+
T Consensus 413 --------------------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 413 --------------------------------------------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp --------------------------------------------TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred --------------------------------------------chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 000114578899999999999999999999999999
Q ss_pred eeeCcCCccc-cccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCC-CcccccCCcccCCC
Q 008024 407 ALNLSNNSLS-GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDESSYRGN 484 (580)
Q Consensus 407 ~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~gN 484 (580)
+|+|++|.++ +.+|..++.+++|++|+|++|++++..|..+..+++|++|++++|++++.+|.. ..+..++...+.+|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999998 578999999999999999999999988999999999999999999999988763 66778888899999
Q ss_pred cCCCCccc
Q 008024 485 PSLCAWLI 492 (580)
Q Consensus 485 ~~lc~~~l 492 (580)
|+.|+|+.
T Consensus 529 ~~~~~~~~ 536 (570)
T 2z63_A 529 PWDCSCPR 536 (570)
T ss_dssp CBCCCTTT
T ss_pred cccCCCcc
Confidence 99998763
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-46 Score=404.36 Aligned_cols=204 Identities=19% Similarity=0.272 Sum_probs=96.5
Q ss_pred cCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCc-CCC-cccccccCC------CCCCEEEccCCcCCccccc--
Q 008024 59 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNL------TRLRHLYFENNNFSGKIKD-- 128 (580)
Q Consensus 59 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~-- 128 (580)
.+++|++|++++|.+.+.+|..+ .++++|++|++++|+ +++ .+|..++++ ++|++|++++|+++ .+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence 34455555555555554444332 345555555555554 444 444444443 45555555555554 4444
Q ss_pred cccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCC-CCEEEccCCCCCCccccCcC--C
Q 008024 129 GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRLSGPIASSLN--L 205 (580)
Q Consensus 129 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~--l 205 (580)
.+..+++|++|++++|.++|.+| .++.++. |++|++++|+++ .+|..+..+++ |++|++++|.++..+..... +
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l 401 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhccc
Confidence 45555555555555555554444 4444444 555555555554 44444555554 55555555555422221111 2
Q ss_pred CCccEEEcccCCCCCCCccccc-------CCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCC
Q 008024 206 SSVEHLSLQKNALNGLIPGELF-------RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 267 (580)
Q Consensus 206 ~~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 267 (580)
++|+.|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 2455555555555544444444 4445555555555554222222333455555555555554
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-46 Score=409.49 Aligned_cols=351 Identities=19% Similarity=0.225 Sum_probs=267.3
Q ss_pred cCCCCcEEEcccccccC-----------------ccchHH-hcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCC
Q 008024 59 EMKELSLLDLSRNYFSG-----------------GLSQSV-VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 120 (580)
Q Consensus 59 ~l~~L~~L~Ls~n~~~~-----------------~~~~~~-~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n 120 (580)
.+++|++|+|++|.+++ .+|..+ |.++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 56788888888888886 378776 447999999999999999999999999999999999999
Q ss_pred c-CCc-cccccccCCC-------cccEEecccCcCCCCChh--HHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEE
Q 008024 121 N-FSG-KIKDGLLSST-------SLQVLDISNNMLSGHIPH--WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILD 189 (580)
Q Consensus 121 ~-l~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~p~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 189 (580)
+ +++ .+|..+..++ +|++|++++|.++ .+|. .++.++. |+.|++++|+++ .+| .++.+++|+.|+
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~-L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK-LGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT-CCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC-CCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 8 887 7887666555 9999999999999 8888 8888887 999999999998 777 889999999999
Q ss_pred ccCCCCCCccccCcCCCC-ccEEEcccCCCCCCCcccccCCC--CCCEEEcccCcccccCCccc---c--CCCCccEEEc
Q 008024 190 ISENRLSGPIASSLNLSS-VEHLSLQKNALNGLIPGELFRSC--KLVTLNLRDNTFSGRIPHQI---N--EHSNLRFLLL 261 (580)
Q Consensus 190 ls~n~l~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~---~--~~~~L~~L~L 261 (580)
+++|.++..+.....+++ |+.|++++|.++ .+|..+...+ +|+.|++++|++.+.+|... . .+++|+.|++
T Consensus 602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred CcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 999999854445557888 999999999998 6777776654 49999999999987665332 2 3458999999
Q ss_pred CCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCcccc
Q 008024 262 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 341 (580)
Q Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (580)
++|.++...+..+..+++|+.|++++|+++ .+|..+.....-
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~------------------------------------- 722 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG------------------------------------- 722 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS-------------------------------------
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc-------------------------------------
Confidence 999998444444558899999999999998 566543221000
Q ss_pred chhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhh--ccccCCeeeCcCCcccccc
Q 008024 342 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG--QLQAILALNLSNNSLSGSI 419 (580)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~ 419 (580)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +
T Consensus 723 --------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 723 --------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp --------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred --------------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 0022446777777777777 6666665 67777777777777774 6
Q ss_pred chhhhCcccCCeEeCCC------CeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccccCCcccCCCcCCC
Q 008024 420 PESFSNLKMIESLDISY------NKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 488 (580)
Q Consensus 420 p~~~~~l~~L~~LdLs~------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc 488 (580)
|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|.. .+..+....+.+|+...
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 66677777777777755 666677777777777777777777777 566654 22455566666776543
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-44 Score=391.87 Aligned_cols=300 Identities=21% Similarity=0.274 Sum_probs=255.3
Q ss_pred CCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEccccccc
Q 008024 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYFS 74 (580)
Q Consensus 2 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~~ 74 (580)
+.++++++. +|..+. +++++|+|++|.+++..+..|+++++|++|+|++|.+++ .+++|++|++++|.++
T Consensus 10 ~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 10 DCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp ECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred ECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 567888887 454443 799999999999998888889999999999999999886 6899999999999998
Q ss_pred CccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHH
Q 008024 75 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 154 (580)
Q Consensus 75 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 154 (580)
.+|...|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+
T Consensus 87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp -CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred -ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 7887777899999999999999998888899999999999999999998888899999999999999999997666666
Q ss_pred hh--ccCCCcEEEeecCcCCCccCccCCCC---------------------------CCCCEEEccCCCCCCccccCc-C
Q 008024 155 GN--FSSELEILSMSKNHLEGNVPVQLNNL---------------------------ERLRILDISENRLSGPIASSL-N 204 (580)
Q Consensus 155 ~~--~~~~L~~L~l~~n~l~~~~~~~~~~l---------------------------~~L~~L~ls~n~l~~~~~~~~-~ 204 (580)
.. .+. |+.|++++|.+++..|..+..+ ++|+.|++++|.+.+..+..+ .
T Consensus 166 ~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 166 DIFANSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp GGGTTCE-ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hcccccc-ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 53 345 9999999999998777766544 567788888888887766655 4
Q ss_pred C--CCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCC-----CChh----h
Q 008024 205 L--SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG-----PIPD----Q 273 (580)
Q Consensus 205 l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~----~ 273 (580)
+ ++|++|++++|.+++..|..+..+++|++|++++|++.+..|..+..+++|++|++++|...+ .+|. .
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 4 459999999999998888889999999999999999998888889999999999998876543 2232 6
Q ss_pred hcCCCCCCEEECcCCcccccCChhhhccccccc
Q 008024 274 LCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 306 (580)
Q Consensus 274 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 306 (580)
+..+++|++|++++|.+++..|..+..++.++.
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcE
Confidence 778899999999999999888887877776655
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-44 Score=386.92 Aligned_cols=422 Identities=18% Similarity=0.196 Sum_probs=276.0
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.+++..+..|.++++|++|++++|++++..|.+|+++++|++|+|++|.+++ .+++|++|++++|.+
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 4678888888777888888888888888888887777788888888888888888775 677888888888888
Q ss_pred cCc-cchHHhcCCCCCcEEEcccCcC-CCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCCh
Q 008024 74 SGG-LSQSVVTGCFSLELLDLSNNNF-EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP 151 (580)
Q Consensus 74 ~~~-~~~~~~~~l~~L~~L~ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 151 (580)
++. .|. .+.++++|++|++++|.+ ....+..+.++++|++|++++|.+++..|..+..+++|++|+++.|.+. .+|
T Consensus 111 ~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~ 188 (549)
T 2z81_A 111 QTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL 188 (549)
T ss_dssp SSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THH
T ss_pred cccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccc
Confidence 742 233 356788888888888874 4333457788888888888888888777888888888888888888876 566
Q ss_pred hHHhh-ccCCCcEEEeecCcCCCcc--C-ccCCCCCCCCEEEccCCCCCCccccC-------------------------
Q 008024 152 HWMGN-FSSELEILSMSKNHLEGNV--P-VQLNNLERLRILDISENRLSGPIASS------------------------- 202 (580)
Q Consensus 152 ~~~~~-~~~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~ls~n~l~~~~~~~------------------------- 202 (580)
..+.. ++. |++|++++|++++.. + .....+++|+.|++++|.+++..+..
T Consensus 189 ~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 189 EIFADILSS-VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHSTTT-BSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred hhhHhhccc-ccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 65543 444 888888888887532 1 11233455555555555443211100
Q ss_pred ----------cCCCCccEEEcccCCCCCC-----CcccccCCCCCCEEEcccCcccccCCccc-cCCCCccEEEcCCCcC
Q 008024 203 ----------LNLSSVEHLSLQKNALNGL-----IPGELFRSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHL 266 (580)
Q Consensus 203 ----------~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l 266 (580)
..+.+++.|++.++.+... .+..+...++|+.|++++|++. .+|..+ ..+++|++|++++|.+
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc
Confidence 0222333333333322211 0011112345666666666665 445444 3566666666666666
Q ss_pred CCCChh---hhcCCCCCCEEECcCCcccccCC--hhhhccccccccc--CCcccccCCCCccccchhccCCCCCCCCCcc
Q 008024 267 QGPIPD---QLCQLQKLAMMDLSRNKFSGSIP--PCFANVLSWRVGS--DDVLNGSKLNSPELDEEIEFGSLGNNRSSNT 339 (580)
Q Consensus 267 ~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (580)
++..|. .+..+++|++|++++|++++..+ ..+..++.++... .+.+. .+
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~l 402 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH------------------------PM 402 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC------------------------CC
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc------------------------cC
Confidence 654432 24556666666666666654321 2233333322210 00000 00
Q ss_pred ccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCcccccc
Q 008024 340 MFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 419 (580)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 419 (580)
+. ....+++|++|++++|+++ .+|..+ .++|++|+|++|++++.+
T Consensus 403 p~--------------------------------~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 403 PD--------------------------------SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp CS--------------------------------CCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC
T ss_pred Ch--------------------------------hhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc
Confidence 00 0123567888999999887 455444 268899999999988643
Q ss_pred chhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCC-CCcccccCCcccCCCcCCCCcc
Q 008024 420 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 420 p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~ 491 (580)
..+++|++|||++|+++ .+|. ...+++|++|++++|++++.+|. ...+..+....+.+||+.|+|+
T Consensus 448 ----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 ----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57889999999999998 6776 46788999999999999988886 3666777888899999999886
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-44 Score=389.25 Aligned_cols=405 Identities=20% Similarity=0.190 Sum_probs=333.4
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.++++.+.+|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++ .+++|++|++++|.+
T Consensus 61 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 140 (606)
T 3vq2_A 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred EeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence 5799999999999999999999999999999998889999999999999999999874 788999999999999
Q ss_pred cC-ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCC----EEEccCCcCCcccccc-------------------
Q 008024 74 SG-GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR----HLYFENNNFSGKIKDG------------------- 129 (580)
Q Consensus 74 ~~-~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~------------------- 129 (580)
++ .+|..+ .++++|++|++++|.+++..+..+..+++|+ +|++++|.+++..+..
T Consensus 141 ~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~ 219 (606)
T 3vq2_A 141 HSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219 (606)
T ss_dssp CCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH
T ss_pred cceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchh
Confidence 85 457654 7899999999999999887776665544433 5555555554322221
Q ss_pred -------------------------------------------------------------ccCCCcccEEecccCcCCC
Q 008024 130 -------------------------------------------------------------LLSSTSLQVLDISNNMLSG 148 (580)
Q Consensus 130 -------------------------------------------------------------l~~l~~L~~L~l~~n~l~~ 148 (580)
+..+++|+.|++++|.+.
T Consensus 220 ~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 298 (606)
T 3vq2_A 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK- 298 (606)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-
T ss_pred HHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-
Confidence 334466667777777775
Q ss_pred CChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCC--Ccccc
Q 008024 149 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL--IPGEL 226 (580)
Q Consensus 149 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~ 226 (580)
.+| .+..++. |+.|++++|.+ +.+| .+ .+++|+.|++++|...+.. ....+++|++|++++|.+++. .+..+
T Consensus 299 ~l~-~l~~~~~-L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 299 YLE-DVPKHFK-WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp CCC-CCCTTCC-CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred hhh-hcccccc-CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhh
Confidence 566 6667766 99999999999 4777 45 8999999999999655443 334899999999999999865 37888
Q ss_pred cCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCCh-hhhcCCCCCCEEECcCCcccccCChhhhcccccc
Q 008024 227 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 305 (580)
Q Consensus 227 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 305 (580)
..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..++.++
T Consensus 373 ~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 999999999999999984 66889999999999999999998777 6789999999999999999998998888776655
Q ss_pred cccC--CcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccE
Q 008024 306 VGSD--DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 383 (580)
Q Consensus 306 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 383 (580)
.... +.+.+.. .......+++|+.
T Consensus 452 ~L~l~~n~l~~~~------------------------------------------------------~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 452 TLKMAGNSFKDNT------------------------------------------------------LSNVFANTTNLTF 477 (606)
T ss_dssp EEECTTCEEGGGE------------------------------------------------------ECSCCTTCTTCCE
T ss_pred EEECCCCcCCCcc------------------------------------------------------hHHhhccCCCCCE
Confidence 4211 1111000 0001245789999
Q ss_pred EEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCC-cCCeeeCcCCc
Q 008024 384 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN-FLSIFNVSYNN 462 (580)
Q Consensus 384 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~Ls~N~ 462 (580)
|++++|++++..|..++.+++|++|+|++|++++.+|..|+.+++|++|||++|+++ .+|..+..++ +|++|++++|+
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 999999999999999999999999999999999988999999999999999999999 6888899997 69999999999
Q ss_pred ccccCCC
Q 008024 463 LSGRTPD 469 (580)
Q Consensus 463 l~~~~p~ 469 (580)
+.+..+.
T Consensus 557 ~~c~c~~ 563 (606)
T 3vq2_A 557 VACICEH 563 (606)
T ss_dssp CCCSSTT
T ss_pred cccCCcc
Confidence 9987664
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-45 Score=390.53 Aligned_cols=424 Identities=21% Similarity=0.237 Sum_probs=286.8
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
||+++|+++. +|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++ .+++|++|++++|.+
T Consensus 5 l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 5 VDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred EecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 5789999997 555554 899999999999998777889999999999999998875 678899999999999
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCC-cccccccCCCCCCEEEccCCcCCccccccccCCCcc--cEEecccCcC--CC
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL--QVLDISNNML--SG 148 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~ 148 (580)
+ .+|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+
T Consensus 82 ~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 82 V-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp C-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred e-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 8 67775 68899999999999887 467889999999999999998875 346667777 9999999988 66
Q ss_pred CChhHHhhccCCCcEEEeecCcCCCccCc-cCCCCCCCCEEEccCCC-------CCCccccCcC----------------
Q 008024 149 HIPHWMGNFSSELEILSMSKNHLEGNVPV-QLNNLERLRILDISENR-------LSGPIASSLN---------------- 204 (580)
Q Consensus 149 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls~n~-------l~~~~~~~~~---------------- 204 (580)
..|..+..+..+...+++++|.+.+.++. .+..+++|+.+++++|. +.+..+....
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 77777666442233445555554433322 23344444444444443 1111111112
Q ss_pred -----------CCCccEEEcccCCCCCCCcccc-----cCCCCCCEEEcccCcccccCC-ccccCC---CCccEEEcCCC
Q 008024 205 -----------LSSVEHLSLQKNALNGLIPGEL-----FRSCKLVTLNLRDNTFSGRIP-HQINEH---SNLRFLLLGGN 264 (580)
Q Consensus 205 -----------l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~-~~~~~~---~~L~~L~L~~n 264 (580)
.++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 2355555555555555555554 4455555555555554 222 222221 34455555555
Q ss_pred cCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchh
Q 008024 265 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 344 (580)
Q Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (580)
.+.... ....+++|++|++++|++++.+|..+..++.++..... .+....+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~----------------------~N~l~~l----- 363 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ----------------------MNQLKEL----- 363 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC----------------------SSCCCBH-----
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc----------------------CCccCcc-----
Confidence 443211 01455666666666666666566555554433321100 0000000
Q ss_pred hhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChh-hhccccCCeeeCcCCccccccchhh
Q 008024 345 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD-IGQLQAILALNLSNNSLSGSIPESF 423 (580)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~ 423 (580)
..+ ......+++|+.|++++|.+++.+|.. +..+++|++|++++|++++..|..+
T Consensus 364 ---~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 364 ---SKI---------------------AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp ---HHH---------------------HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred ---ccc---------------------hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 000 000134678999999999999767764 7889999999999999998888776
Q ss_pred hCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCC-CCcccccCCcccCCCcCCCCccc
Q 008024 424 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLI 492 (580)
Q Consensus 424 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~l 492 (580)
. ++|++|||++|+++ .+|..+..+++|++|++++|++++..+. ...+..+....+.+||+.|+|++
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 5 79999999999999 7898888999999999999999964444 45567778888999999998875
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8e-44 Score=392.25 Aligned_cols=344 Identities=19% Similarity=0.283 Sum_probs=235.0
Q ss_pred CCcccCCCCCCCEEEcccCCCcc--------------------------cCCCCcEEEcccccccCccchHHhcCCCCCc
Q 008024 36 LPSVISNLTSLEYLDLSHNNFEG--------------------------EMKELSLLDLSRNYFSGGLSQSVVTGCFSLE 89 (580)
Q Consensus 36 ~~~~~~~l~~L~~L~L~~n~l~~--------------------------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~ 89 (580)
+|..|+++++|++|+|++|.+++ .+++|++|+|++|.+.+.+|..+ .++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCC
Confidence 56677777777777777777776 56777777777777777777544 5677777
Q ss_pred EEEcccCc-CCC-cccccccCCC-------CCCEEEccCCcCCccccc--cccCCCcccEEecccCcCCCCChhHHhhcc
Q 008024 90 LLDLSNNN-FEG-QFFSEYMNLT-------RLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFS 158 (580)
Q Consensus 90 ~L~ls~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 158 (580)
+|++++|+ +++ .+|..+++++ +|++|++++|.++ .+|. .+..+++|++|++++|.++ .+| .++.++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 77777776 766 5666554443 7777777777777 6666 7777777777777777777 666 666666
Q ss_pred CCCcEEEeecCcCCCccCccCCCCCC-CCEEEccCCCCCCccccCc-CC--CCccEEEcccCCCCCCCcccc---c--CC
Q 008024 159 SELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRLSGPIASSL-NL--SSVEHLSLQKNALNGLIPGEL---F--RS 229 (580)
Q Consensus 159 ~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~-~l--~~L~~L~L~~n~l~~~~~~~~---~--~~ 229 (580)
. |+.|++++|+++ .+|..+..+++ |+.|++++|.++.. +..+ .+ ++|+.|++++|.+++.+|... . .+
T Consensus 596 ~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 596 K-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp E-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred c-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 5 777777777777 67777777777 77777777777733 3333 22 347777777777776554321 1 23
Q ss_pred CCCCEEEcccCcccccCCccc-cCCCCccEEEcCCCcCCCCChhhhcCC--------CCCCEEECcCCcccccCChhhhc
Q 008024 230 CKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHLQGPIPDQLCQL--------QKLAMMDLSRNKFSGSIPPCFAN 300 (580)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~Ls~N~l~~~~p~~~~~ 300 (580)
++|+.|++++|+++ .+|..+ ..+++|+.|+|++|.++ .+|..+... ++|+.|++++|+++ .+|..+..
T Consensus 673 ~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~ 749 (876)
T 4ecn_A 673 INASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA 749 (876)
T ss_dssp CCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred CCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh
Confidence 46777777777777 445443 46777777777777777 455443332 27777777777776 45543310
Q ss_pred ccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeeccccccc
Q 008024 301 VLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 380 (580)
Q Consensus 301 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 380 (580)
..+++
T Consensus 750 ---------------------------------------------------------------------------~~l~~ 754 (876)
T 4ecn_A 750 ---------------------------------------------------------------------------TTLPY 754 (876)
T ss_dssp ---------------------------------------------------------------------------TTCTT
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 13456
Q ss_pred ccEEEccCCcCcccCChhhhccccCCeeeCcC------CccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCC
Q 008024 381 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSN------NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 454 (580)
Q Consensus 381 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~ 454 (580)
|+.|+|++|.+++ +|..++.+++|+.|+|++ |++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+
T Consensus 755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~ 830 (876)
T 4ecn_A 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY 830 (876)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCC
Confidence 7777777777775 677777777777777765 666777777777777777777777777 46777654 5777
Q ss_pred eeeCcCCcccccCC
Q 008024 455 IFNVSYNNLSGRTP 468 (580)
Q Consensus 455 ~L~Ls~N~l~~~~p 468 (580)
.|+|++|++....+
T Consensus 831 ~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 831 ILDIADNPNISIDV 844 (876)
T ss_dssp EEECCSCTTCEEEC
T ss_pred EEECCCCCCCccCh
Confidence 77777777765444
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-44 Score=382.75 Aligned_cols=407 Identities=18% Similarity=0.192 Sum_probs=337.8
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|+|++|.+++..+.+|+++++|++|+|++|.+++..|.+|+++++|++|++++|.+++ .+++|++|++++|.+
T Consensus 57 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcc
Confidence 5899999999989999999999999999999998888999999999999999998874 788999999999999
Q ss_pred cC-ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCC----CEEEccCCcCCccccccccCCCcccEEecccC----
Q 008024 74 SG-GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL----RHLYFENNNFSGKIKDGLLSSTSLQVLDISNN---- 144 (580)
Q Consensus 74 ~~-~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n---- 144 (580)
++ .+|..+ .++++|++|++++|.+++..+..+..+++| ++|++++|.+++..+..+... +|+.|++++|
T Consensus 137 ~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~ 214 (570)
T 2z63_A 137 QSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214 (570)
T ss_dssp CCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT
T ss_pred ceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccc
Confidence 85 457664 789999999999999998888888888888 899999999997777766654 7888888776
Q ss_pred ------------------------------------------------------cCCCCChhHHhhccCCCcEEEeecCc
Q 008024 145 ------------------------------------------------------MLSGHIPHWMGNFSSELEILSMSKNH 170 (580)
Q Consensus 145 ------------------------------------------------------~l~~~~p~~~~~~~~~L~~L~l~~n~ 170 (580)
.+.+..|..+..++. |+.|++++|.
T Consensus 215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~ 293 (570)
T 2z63_A 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVT 293 (570)
T ss_dssp THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT-CSEEEEESCE
T ss_pred cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc-ccEEEecCcc
Confidence 233345566666776 9999999999
Q ss_pred CCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccC--Cc
Q 008024 171 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI--PH 248 (580)
Q Consensus 171 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~ 248 (580)
++ .+|..+..+ +|+.|++++|.+..... ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. +.
T Consensus 294 l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 294 IE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp EC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEH
T ss_pred ch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccc
Confidence 98 588888888 99999999999884433 3688999999999988766554 67889999999999988553 67
Q ss_pred cccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCC-hhhhcccccccccC--CcccccCCCCccccch
Q 008024 249 QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP-PCFANVLSWRVGSD--DVLNGSKLNSPELDEE 325 (580)
Q Consensus 249 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~ 325 (580)
.+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..| ..+..++.++.... +.+.+..
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------- 437 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--------- 437 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC---------
T ss_pred cccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc---------
Confidence 78889999999999999885444 48889999999999999987665 34555554433211 0000000
Q ss_pred hccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCc-ccCChhhhcccc
Q 008024 326 IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQA 404 (580)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~ 404 (580)
......+++|+.|++++|.++ +.+|..+..+++
T Consensus 438 ----------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 438 ----------------------------------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp ----------------------------------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ----------------------------------------------hhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 001135789999999999998 579999999999
Q ss_pred CCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCc
Q 008024 405 ILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ 472 (580)
Q Consensus 405 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 472 (580)
|++|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|+.|++++|++++..|....
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 99999999999988899999999999999999999988888899999999999999999999987543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-43 Score=373.22 Aligned_cols=380 Identities=22% Similarity=0.308 Sum_probs=290.0
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc----cCCCCcEEEcccccccC-
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG----EMKELSLLDLSRNYFSG- 75 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~l~~L~~L~Ls~n~~~~- 75 (580)
|+|++|.+++..+..|.++++|++|+|++|++++..|++|+++++|++|+|++|++++ .+++|++|++++|.+++
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~ 105 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDAL 105 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCccccc
Confidence 5899999999999999999999999999999998889999999999999999999885 68899999999999986
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCC--CEEEccCCcC--CccccccccC-------------------
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL--RHLYFENNNF--SGKIKDGLLS------------------- 132 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~------------------- 132 (580)
.+|.. ++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 106 ~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 106 PICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp CCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred cchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhh
Confidence 35555 4789999999999999986 456777788 9999999998 5555555544
Q ss_pred -------CCcccEEecccCc-------CCCCChhHHhhccC--------------------------CCcEEEeecCcCC
Q 008024 133 -------STSLQVLDISNNM-------LSGHIPHWMGNFSS--------------------------ELEILSMSKNHLE 172 (580)
Q Consensus 133 -------l~~L~~L~l~~n~-------l~~~~p~~~~~~~~--------------------------~L~~L~l~~n~l~ 172 (580)
+++|+.|++++|. +.+.+| .+..++. +|++|++++|+++
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE
T ss_pred hhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc
Confidence 5667777777665 222222 2222222 3667777777766
Q ss_pred CccCccC-----CCCCCCCEEEccCCCCCCccccCc----CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccc
Q 008024 173 GNVPVQL-----NNLERLRILDISENRLSGPIASSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243 (580)
Q Consensus 173 ~~~~~~~-----~~l~~L~~L~ls~n~l~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (580)
+.+|..+ ..+++|+.+++++|.+ ..+...+ ...+|+.|++++|.+.... ....+++|++|++++|+++
T Consensus 261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 261 GQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp SCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred CccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccC
Confidence 6666666 6677777777777766 2221111 1245777777777765432 1245667777777777777
Q ss_pred ccCCccccCCCCccEEEcCCCcCCC--CChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCcc
Q 008024 244 GRIPHQINEHSNLRFLLLGGNHLQG--PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 321 (580)
Q Consensus 244 ~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 321 (580)
+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|...
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~----------------------- 394 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD----------------------- 394 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-----------------------
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-----------------------
Confidence 7677777777777777777777765 345667777777777777777765444320
Q ss_pred ccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhc
Q 008024 322 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 401 (580)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 401 (580)
...+++|+.|++++|++++.+|..+.
T Consensus 395 -----------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 395 -----------------------------------------------------CSWTKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp -----------------------------------------------------CCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred -----------------------------------------------------hccCccCCEEECcCCCCCcchhhhhc-
Confidence 02357899999999999988877664
Q ss_pred cccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccc-cccCCcCCeeeCcCCcccccCC
Q 008024 402 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTP 468 (580)
Q Consensus 402 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 468 (580)
++|+.|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|++|++++|++++..+
T Consensus 421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 79999999999999 88888889999999999999999 56665 8999999999999999987655
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-42 Score=363.29 Aligned_cols=359 Identities=19% Similarity=0.236 Sum_probs=268.8
Q ss_pred CCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCC
Q 008024 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 99 (580)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~ 99 (580)
++|++|+|++|.+++..|..|+++++|++|++++|.+. +.++...+.++++|++|++++|.++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-----------------~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-----------------LVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-----------------CEECTTTTTTCTTCCEEECTTCTTC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCccc-----------------ceECcccccccccCCEEeCCCCccC
Confidence 56777777777777666666777777777766666554 3555555677777888888877777
Q ss_pred CcccccccCCCCCCEEEccCCcCCcccccc--ccCCCcccEEecccCcCCCCChhH-HhhccCCCcEEEeecCcCCCccC
Q 008024 100 GQFFSEYMNLTRLRHLYFENNNFSGKIKDG--LLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEGNVP 176 (580)
Q Consensus 100 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l~~~~~ 176 (580)
+..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..++. |++|++++|++++..+
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVKSICE 171 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCBSCCCT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCcccccCh
Confidence 777777777778888888887777644443 777777888888888777665655 556665 8888888887777777
Q ss_pred ccCCCC--CCCCEEEccCCCCCCccccC---------cCCCCccEEEcccCCCCCCCcccccCC---CCCCEEEcccCcc
Q 008024 177 VQLNNL--ERLRILDISENRLSGPIASS---------LNLSSVEHLSLQKNALNGLIPGELFRS---CKLVTLNLRDNTF 242 (580)
Q Consensus 177 ~~~~~l--~~L~~L~ls~n~l~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~L~~n~l 242 (580)
..+..+ .+|+.|++++|.+.+..+.. +.+++|++|++++|.+++..|..+... ++|+.|++++|.+
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 666655 57777888887777654332 245678888888888877666655443 6788888887755
Q ss_pred ccc----------CCcccc--CCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCC
Q 008024 243 SGR----------IPHQIN--EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD 310 (580)
Q Consensus 243 ~~~----------~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 310 (580)
.+. .+..+. ..++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----------- 320 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW----------- 320 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-----------
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc-----------
Confidence 432 111222 236899999999999888888888999999999999998866665543
Q ss_pred cccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCc
Q 008024 311 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ 390 (580)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 390 (580)
.+++|+.|+|++|.
T Consensus 321 ------------------------------------------------------------------~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 321 ------------------------------------------------------------------GLTHLLKLNLSQNF 334 (455)
T ss_dssp ------------------------------------------------------------------TCTTCCEEECCSSC
T ss_pred ------------------------------------------------------------------CcccCCEEECCCCc
Confidence 24578889999999
Q ss_pred CcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCC
Q 008024 391 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 470 (580)
Q Consensus 391 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 470 (580)
+++..|..++.+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|..
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 98777888899999999999999999888889999999999999999999766677888999999999999999988865
Q ss_pred Ccc
Q 008024 471 GQF 473 (580)
Q Consensus 471 ~~~ 473 (580)
..+
T Consensus 415 ~~l 417 (455)
T 3v47_A 415 DYL 417 (455)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-42 Score=372.64 Aligned_cols=406 Identities=20% Similarity=0.210 Sum_probs=313.1
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc--------cCCCCcEEEccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG--------EMKELSLLDLSRNY 72 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--------~l~~L~~L~Ls~n~ 72 (580)
|+|++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ .+++|++|++++|.
T Consensus 55 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred EECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 5799999999999999999999999999999998888889999999999999998873 67899999999999
Q ss_pred ccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCC--
Q 008024 73 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI-- 150 (580)
Q Consensus 73 ~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-- 150 (580)
+.+.+|...+.++++|++|++++|.+++..|..+.++++|++|++++|.+.......+..+++|++|++++|.+++..
T Consensus 135 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc
Confidence 766888777789999999999999999989999999999999999999887333333456889999999999887531
Q ss_pred hhHHhhccCC----------------------------CcEEEeecCcCCCcc------CccCCCCCCCCEEEccCCCCC
Q 008024 151 PHWMGNFSSE----------------------------LEILSMSKNHLEGNV------PVQLNNLERLRILDISENRLS 196 (580)
Q Consensus 151 p~~~~~~~~~----------------------------L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~ls~n~l~ 196 (580)
|..+.....+ |+.+++++|.+.+.. ...+..+.+|+.|++.++.+.
T Consensus 215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 294 (549)
T 2z81_A 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294 (549)
T ss_dssp CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS
T ss_pred ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc
Confidence 1111111122 444555554443211 122345566777777766654
Q ss_pred Ccccc-----Cc-CCCCccEEEcccCCCCCCCcccc-cCCCCCCEEEcccCcccccCC---ccccCCCCccEEEcCCCcC
Q 008024 197 GPIAS-----SL-NLSSVEHLSLQKNALNGLIPGEL-FRSCKLVTLNLRDNTFSGRIP---HQINEHSNLRFLLLGGNHL 266 (580)
Q Consensus 197 ~~~~~-----~~-~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l 266 (580)
..... .. ...+|+.|++++|.++ .+|..+ ..+++|++|++++|++++..| ..++.+++|++|++++|++
T Consensus 295 ~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 373 (549)
T 2z81_A 295 QFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373 (549)
T ss_dssp CGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC
T ss_pred hhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc
Confidence 32110 01 3568999999999998 556555 578999999999999997664 3477899999999999999
Q ss_pred CCCCh--hhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchh
Q 008024 267 QGPIP--DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 344 (580)
Q Consensus 267 ~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (580)
++..+ ..+..+++|++|++++|+++ .+|..+..+..++.... ..+.
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L----------------------s~N~--------- 421 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL----------------------SSTG--------- 421 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC----------------------TTSC---------
T ss_pred cccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC----------------------CCCC---------
Confidence 85432 45889999999999999998 67776655544433110 0000
Q ss_pred hhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhh
Q 008024 345 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 424 (580)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 424 (580)
...+....+++|+.||+++|++++.+ ..+++|++|+|++|+++ .+|. .+
T Consensus 422 -------------------------l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 422 -------------------------IRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp -------------------------CSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred -------------------------cccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence 00011123468999999999999653 57899999999999999 7776 57
Q ss_pred CcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCC
Q 008024 425 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 470 (580)
Q Consensus 425 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 470 (580)
.+++|++|||++|++++.+|..+..+++|++|++++|++++..|..
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 8999999999999999988889999999999999999999888753
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.3e-42 Score=372.87 Aligned_cols=430 Identities=17% Similarity=0.155 Sum_probs=265.8
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|||++|+|+++.+.+|.++++|++|||++|+|++..+.+|.++++|++|+|++|++++ .+++|++|++++|++
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 4566666666666666666666666666666665555566666666666666666553 456666666666666
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCC-cccccccCCCCCCEEEccCCcCCccccccccCCCcc----cEEecccCcCCC
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL----QVLDISNNMLSG 148 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~ 148 (580)
+ .++...|+++++|++|++++|.++. ..|..+..+++|++|++++|++++..+..+..+.++ ..++++.|.+..
T Consensus 137 ~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 137 A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp C-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred C-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 5 4444445566666666666666654 234555566666666666666655544444333222 133444444331
Q ss_pred CChhHHhhccCCCcEEEeecCcCCC-------------------------------------------------------
Q 008024 149 HIPHWMGNFSSELEILSMSKNHLEG------------------------------------------------------- 173 (580)
Q Consensus 149 ~~p~~~~~~~~~L~~L~l~~n~l~~------------------------------------------------------- 173 (580)
++........ ++.+++.+|....
T Consensus 216 -i~~~~~~~~~-~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 216 -IQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp -ECTTTTTTCE-EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred -cCcccccchh-hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 1111000000 1112221111000
Q ss_pred ---ccC----------------------ccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccC
Q 008024 174 ---NVP----------------------VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFR 228 (580)
Q Consensus 174 ---~~~----------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 228 (580)
..+ ..+.....++.|++.+|.+...... .+..|+.+++..|..... .....
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~l~l~~n~~~~~--~~~~~ 369 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNA--FSEVD 369 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC--BCTTCCEEEEESCCSCCB--CCCCB
T ss_pred cccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc--cchhhhhcccccccCCCC--ccccc
Confidence 000 0112223344444444443322211 234455555555554422 23345
Q ss_pred CCCCCEEEcccCcccc--cCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCCh-hhhcccccc
Q 008024 229 SCKLVTLNLRDNTFSG--RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWR 305 (580)
Q Consensus 229 ~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~ 305 (580)
+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.... .+..+..+++|+.+++++|......+. .+..+..+.
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccc
Confidence 7788999999988763 345566677888999988888763 455577788889999888877655443 233333222
Q ss_pred ccc--CCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccE
Q 008024 306 VGS--DDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 383 (580)
Q Consensus 306 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 383 (580)
... .+.+.+. .......++.++.
T Consensus 449 ~l~ls~n~l~~~-------------------------------------------------------~~~~~~~~~~L~~ 473 (635)
T 4g8a_A 449 YLDISHTHTRVA-------------------------------------------------------FNGIFNGLSSLEV 473 (635)
T ss_dssp EEECTTSCCEEC-------------------------------------------------------CTTTTTTCTTCCE
T ss_pred cccccccccccc-------------------------------------------------------cccccccchhhhh
Confidence 110 0000000 0001134678999
Q ss_pred EEccCCcC-cccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCc
Q 008024 384 LDLSCNQL-TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNN 462 (580)
Q Consensus 384 L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 462 (580)
|++++|.+ .+..|..+..+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|++|++++|+
T Consensus 474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 99999975 44678889999999999999999999999999999999999999999999889999999999999999999
Q ss_pred ccccCCCC-Ccc-cccCCcccCCCcCCCCcccc
Q 008024 463 LSGRTPDK-GQF-ATFDESSYRGNPSLCAWLIQ 493 (580)
Q Consensus 463 l~~~~p~~-~~~-~~~~~~~~~gN~~lc~~~l~ 493 (580)
+++.+|.. ..+ .+++...+.|||+.|+|.+.
T Consensus 554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp CCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99999874 233 56778889999999999753
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.3e-42 Score=368.40 Aligned_cols=400 Identities=24% Similarity=0.260 Sum_probs=276.2
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
+|+++|++++ +|..+. ++|++|++++|.+++..|.+|+++++|++|+|++|.+++ .+++|++|++++|.+
T Consensus 36 l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 36 VDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp EECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 4688888888 444443 789999999999987777889999999999999998875 678899999999988
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCCc-ccccccCCCCCCEEEccCCcCCccccccccCCCcc--cEEecccCcC--CC
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEGQ-FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL--QVLDISNNML--SG 148 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~ 148 (580)
+ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++
T Consensus 113 ~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 113 Q-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp C-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred C-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 8 67765 688899999999988863 457888899999999999888753 34444555 8899999888 66
Q ss_pred CChhHHhhccCCCcEEEeecCcCCCccCc-cCCCCCCCCEEEccCCC----------------------------CCCcc
Q 008024 149 HIPHWMGNFSSELEILSMSKNHLEGNVPV-QLNNLERLRILDISENR----------------------------LSGPI 199 (580)
Q Consensus 149 ~~p~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls~n~----------------------------l~~~~ 199 (580)
..|..+..+....-.+++++|.+.+.++. .+..+++|+.+++++|. +.+..
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 66666555331112344455554433322 22334444444444442 21100
Q ss_pred ----ccCcCCCCccEEEcccCCCCCCCcccc-----cCC--------------------------CCCCEEEcccCcccc
Q 008024 200 ----ASSLNLSSVEHLSLQKNALNGLIPGEL-----FRS--------------------------CKLVTLNLRDNTFSG 244 (580)
Q Consensus 200 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~--------------------------~~L~~L~L~~n~l~~ 244 (580)
+.....++|++|++++|.+++.+|..+ ..+ .+|+.|++++|.+..
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc
Confidence 000122366666666666665555544 222 235555555555432
Q ss_pred cCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccC--ChhhhcccccccccCCcccccCCCCccc
Q 008024 245 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI--PPCFANVLSWRVGSDDVLNGSKLNSPEL 322 (580)
Q Consensus 245 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 322 (580)
.. ....+++|++|++++|.+++..|..+..+++|++|++++|++++.. |..+
T Consensus 346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------ 399 (562)
T 3a79_B 346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT------------------------ 399 (562)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT------------------------
T ss_pred cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh------------------------
Confidence 11 1145566666666666666555666666666666666666665311 1111
Q ss_pred cchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCCh-hhhc
Q 008024 323 DEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS-DIGQ 401 (580)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~ 401 (580)
..+++|+.|++++|.+++.+|. .+..
T Consensus 400 -----------------------------------------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 400 -----------------------------------------------------KNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp -----------------------------------------------------TTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred -----------------------------------------------------cCCCCCCEEECCCCcCCCccChhhhcC
Confidence 3457899999999999985665 4788
Q ss_pred cccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCC-CCcccccCCcc
Q 008024 402 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESS 480 (580)
Q Consensus 402 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~ 480 (580)
+++|++|+|++|++++.+|..+. ++|++|||++|+++ .+|..+..+++|++|++++|++++.++. ...+..+....
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 99999999999999988777654 79999999999999 7888888999999999999999965554 46667778888
Q ss_pred cCCCcCCCCccc
Q 008024 481 YRGNPSLCAWLI 492 (580)
Q Consensus 481 ~~gN~~lc~~~l 492 (580)
+.+||+.|+|+.
T Consensus 504 l~~N~~~c~c~~ 515 (562)
T 3a79_B 504 LHDNPWDCTCPG 515 (562)
T ss_dssp CCSCCBCCCHHH
T ss_pred ecCCCcCCCcch
Confidence 999999998865
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-40 Score=348.08 Aligned_cols=369 Identities=21% Similarity=0.281 Sum_probs=306.1
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcc
Q 008024 23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 102 (580)
Q Consensus 23 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~ 102 (580)
+.++.++++++ .+|. +. ++|++|+|++|.++ .++...+.++++|++|++++|.+.+.+
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~------------------~~~~~~~~~l~~L~~L~L~~n~~~~~i 70 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIA------------------ELNETSFSRLQDLQFLKVEQQTPGLVI 70 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCC------------------EECTTTTSSCTTCCEEECCCCSTTCEE
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccC------------------cCChhHhccCccccEEECcCCcccceE
Confidence 46777777776 5554 22 56777777776665 454445688999999999999987544
Q ss_pred -cccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhH--HhhccCCCcEEEeecCcCCCccCcc-
Q 008024 103 -FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW--MGNFSSELEILSMSKNHLEGNVPVQ- 178 (580)
Q Consensus 103 -~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~~~L~~L~l~~n~l~~~~~~~- 178 (580)
+..|.++++|++|++++|++++..|..+.++++|++|++++|.+++..|.. +..++. |++|++++|.+++..|..
T Consensus 71 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~ 149 (455)
T 3v47_A 71 RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRDNNIKKIQPASF 149 (455)
T ss_dssp CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT-CCEEECCSSBCCSCCCCGG
T ss_pred CcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc-CCEEECCCCccCccCcccc
Confidence 567999999999999999999888999999999999999999998756655 777777 999999999999887776
Q ss_pred CCCCCCCCEEEccCCCCCCccccCc---CCCCccEEEcccCCCCCCCccc--------ccCCCCCCEEEcccCcccccCC
Q 008024 179 LNNLERLRILDISENRLSGPIASSL---NLSSVEHLSLQKNALNGLIPGE--------LFRSCKLVTLNLRDNTFSGRIP 247 (580)
Q Consensus 179 ~~~l~~L~~L~ls~n~l~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~ 247 (580)
+.++++|++|++++|.+.+..+..+ ...+|+.|++++|.+.+..+.. +..+++|++|++++|++++..|
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 8899999999999999988777655 3478999999999998765433 3356789999999999998777
Q ss_pred ccccCC---CCccEEEcCCCcCCCC----------Chhhhc--CCCCCCEEECcCCcccccCChhhhcccccccccCCcc
Q 008024 248 HQINEH---SNLRFLLLGGNHLQGP----------IPDQLC--QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL 312 (580)
Q Consensus 248 ~~~~~~---~~L~~L~L~~n~l~~~----------~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 312 (580)
..+... ++|+.|++++|...+. .+..+. ..++|++|++++|.+++..|..+.
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------------- 296 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS------------- 296 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT-------------
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc-------------
Confidence 766543 8899999998865432 122222 236899999999999877666543
Q ss_pred cccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCc
Q 008024 313 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 392 (580)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 392 (580)
.+++|+.|++++|+++
T Consensus 297 ----------------------------------------------------------------~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 297 ----------------------------------------------------------------HFTDLEQLTLAQNEIN 312 (455)
T ss_dssp ----------------------------------------------------------------TCTTCCEEECTTSCCC
T ss_pred ----------------------------------------------------------------cCCCCCEEECCCCccc
Confidence 3467889999999999
Q ss_pred ccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCC-C
Q 008024 393 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-G 471 (580)
Q Consensus 393 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~ 471 (580)
+..|..++.+++|++|+|++|.+++..|..|+.+++|++|||++|++++..|..+..+++|++|++++|++++.++.. .
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 888999999999999999999999888999999999999999999999999999999999999999999999876654 5
Q ss_pred cccccCCcccCCCcCCCCcc
Q 008024 472 QFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 472 ~~~~~~~~~~~gN~~lc~~~ 491 (580)
.+..++...+.+|++.|+|+
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 67788889999999999987
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-40 Score=356.91 Aligned_cols=382 Identities=21% Similarity=0.268 Sum_probs=302.5
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc----cCCCCcEEEcccccccC-
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG----EMKELSLLDLSRNYFSG- 75 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~l~~L~~L~Ls~n~~~~- 75 (580)
|+|++|.|++..+..|.++++|++|+|++|++++..|++|.++++|++|+|++|.++. .+++|++|++++|.+++
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l 136 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVL 136 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCcccc
Confidence 5899999999999999999999999999999998889999999999999999999885 68899999999999984
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCC--CEEEccCCcC--CccccccccC-------------------
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL--RHLYFENNNF--SGKIKDGLLS------------------- 132 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~------------------- 132 (580)
.+|. .+.++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 137 ~~p~-~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 212 (562)
T 3a79_B 137 PVCK-EFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212 (562)
T ss_dssp CCCG-GGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCC
T ss_pred CchH-hhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhh
Confidence 2334 457899999999999999864 34555555 9999999998 6666655544
Q ss_pred -------CCcccEEecccCcCCC----CChhHHhhcc--------------------------CCCcEEEeecCcCCCcc
Q 008024 133 -------STSLQVLDISNNMLSG----HIPHWMGNFS--------------------------SELEILSMSKNHLEGNV 175 (580)
Q Consensus 133 -------l~~L~~L~l~~n~l~~----~~p~~~~~~~--------------------------~~L~~L~l~~n~l~~~~ 175 (580)
+++|+.+++++|...- .....+...+ .+|++|++++|.+++.+
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i 292 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred hhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence 3466666666653100 0000111111 13888888888888777
Q ss_pred CccC-----CCCCCCCEEEccCCCCCCccccCc----CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccC
Q 008024 176 PVQL-----NNLERLRILDISENRLSGPIASSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 246 (580)
Q Consensus 176 ~~~~-----~~l~~L~~L~ls~n~l~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 246 (580)
|..+ ..++.|+.++++.+.+ ..+.... ...+|++|++++|.+.... ....+++|++|++++|++++..
T Consensus 293 p~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 293 DREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp CCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred cchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccch
Confidence 7766 5666666666666665 1111111 2367999999999886432 1267889999999999999989
Q ss_pred CccccCCCCccEEEcCCCcCCCC--ChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccc
Q 008024 247 PHQINEHSNLRFLLLGGNHLQGP--IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDE 324 (580)
Q Consensus 247 ~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 324 (580)
|..+..+++|++|++++|++++. .|..+..+++|++|++++|++++.+|....
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------------------------- 424 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC------------------------- 424 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-------------------------
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-------------------------
Confidence 99999999999999999999863 356789999999999999999875554210
Q ss_pred hhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhcccc
Q 008024 325 EIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA 404 (580)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 404 (580)
..+++|+.|++++|++++.+|..+. ++
T Consensus 425 ---------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 425 ---------------------------------------------------AWAESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp ---------------------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred ---------------------------------------------------cCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence 2356889999999999987776654 79
Q ss_pred CCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccc-cccCCcCCeeeCcCCcccccCCC
Q 008024 405 ILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 405 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~ 469 (580)
|+.|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|+.|++++|++++..|.
T Consensus 452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999999999 78888889999999999999999 56665 99999999999999999987664
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-39 Score=336.88 Aligned_cols=366 Identities=24% Similarity=0.297 Sum_probs=263.8
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCC-------------CEEEcccCCCcc---cCCCCc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSL-------------EYLDLSHNNFEG---EMKELS 64 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~l~~---~l~~L~ 64 (580)
|++++|.+ +.+|++++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ ..++|+
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~ 94 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLE 94 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCS
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCC
Confidence 57899999 6689999999999999999999999999999998875 999999999886 457899
Q ss_pred EEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccC
Q 008024 65 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 144 (580)
Q Consensus 65 ~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 144 (580)
+|++++|.+++ +|. ..++|++|++++|.+++. +.. .++|++|++++|++++ +| .+..+++|++|++++|
T Consensus 95 ~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 95 SLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp EEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred EEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 99999999995 774 247999999999999853 221 2789999999999995 66 5999999999999999
Q ss_pred cCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcc
Q 008024 145 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPG 224 (580)
Q Consensus 145 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 224 (580)
.+++ +|..+ .+|++|++++|++++ +| .++.+++|+.|++++|.+++.... .++|++|++++|.++ .+|
T Consensus 164 ~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp- 231 (454)
T 1jl5_A 164 SLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELP- 231 (454)
T ss_dssp CCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCC-
T ss_pred cCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-ccc-
Confidence 9984 66543 249999999999996 56 689999999999999999874332 368999999999998 566
Q ss_pred cccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccc--cCChhhhccc
Q 008024 225 ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG--SIPPCFANVL 302 (580)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~ 302 (580)
.+..+++|++|++++|++++ +|.. +++|++|++++|.+++ +|.. +++|++|++++|++++ .+|. ++.
T Consensus 232 ~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~---~L~ 300 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPP---NLY 300 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCT---TCC
T ss_pred ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCC---cCC
Confidence 48899999999999999985 5543 4789999999999985 5543 4789999999999986 2222 121
Q ss_pred ccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeeccccccccc
Q 008024 303 SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 382 (580)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 382 (580)
.+... .+.+ ..+. ..+++|+
T Consensus 301 ~L~l~-~N~l----------------------------------------------------------~~i~-~~~~~L~ 320 (454)
T 1jl5_A 301 YLNAS-SNEI----------------------------------------------------------RSLC-DLPPSLE 320 (454)
T ss_dssp EEECC-SSCC----------------------------------------------------------SEEC-CCCTTCC
T ss_pred EEECc-CCcC----------------------------------------------------------Cccc-CCcCcCC
Confidence 11110 0000 0000 1235899
Q ss_pred EEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeee--cCccccccC----------
Q 008024 383 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG--QIPPQLTAL---------- 450 (580)
Q Consensus 383 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l---------- 450 (580)
.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++..+
T Consensus 321 ~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred EEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence 99999999995 6654 588999999999999 5676 47899999999999998 788888887
Q ss_pred ---CcCCeeeCcCCcccc--cCCC
Q 008024 451 ---NFLSIFNVSYNNLSG--RTPD 469 (580)
Q Consensus 451 ---~~L~~L~Ls~N~l~~--~~p~ 469 (580)
++|++|++++|++++ .+|.
T Consensus 393 ~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 393 ELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ------------------------
T ss_pred cccCcCCEEECCCCcCCccccchh
Confidence 889999999999998 6664
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.2e-39 Score=332.13 Aligned_cols=352 Identities=16% Similarity=0.115 Sum_probs=280.4
Q ss_pred CCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc----cCCCCcEEEcccccccCccchHHhcC
Q 008024 9 GSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG----EMKELSLLDLSRNYFSGGLSQSVVTG 84 (580)
Q Consensus 9 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~l~~L~~L~Ls~n~~~~~~~~~~~~~ 84 (580)
....+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++ .+++|++|++++|.+++ ++ +.+
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~-~~---~~~ 104 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-LD---VTP 104 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC---CTT
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCce-ee---cCC
Confidence 344456788899999999999999964 5 68999999999999999986 78899999999999985 44 578
Q ss_pred CCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEE
Q 008024 85 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 164 (580)
Q Consensus 85 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L 164 (580)
+++|++|++++|.+++. + ++++++|++|++++|++++. + +..+++|++|++++|...+.+ .+..++. |+.|
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~-L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQ-LTTL 175 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTT-CCEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCc-CCEE
Confidence 99999999999999864 3 88999999999999999864 3 788999999999999655555 3566766 9999
Q ss_pred EeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccc
Q 008024 165 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 244 (580)
Q Consensus 165 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (580)
++++|++++ +| +..+++|+.|++++|.+++. ....+++|+.|++++|++++ +| +..+++|+.|++++|++++
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 999999986 44 78899999999999999876 34478999999999999997 45 7788999999999999997
Q ss_pred cCCccccCCC-------CccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCC
Q 008024 245 RIPHQINEHS-------NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKL 317 (580)
Q Consensus 245 ~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 317 (580)
..+..+..+. +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.....+..+
T Consensus 248 ~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L------------- 312 (457)
T 3bz5_A 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL------------- 312 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-------------
T ss_pred cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-------------
Confidence 6444333332 34455555555554444 4567888888888888776666432222111
Q ss_pred CCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCCh
Q 008024 318 NSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS 397 (580)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 397 (580)
....+++|+.|++++|++++. +
T Consensus 313 --------------------------------------------------------~l~~~~~L~~L~L~~N~l~~l-~- 334 (457)
T 3bz5_A 313 --------------------------------------------------------DLSQNPKLVYLYLNNTELTEL-D- 334 (457)
T ss_dssp --------------------------------------------------------CCTTCTTCCEEECTTCCCSCC-C-
T ss_pred --------------------------------------------------------chhhcccCCEEECCCCccccc-c-
Confidence 013457899999999999974 3
Q ss_pred hhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCC
Q 008024 398 DIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 470 (580)
Q Consensus 398 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 470 (580)
++.+++|+.|++++|++++ ++.|+.|++++|+++|. ..+..|..+++++|+++|.+|..
T Consensus 335 -l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 8999999999999999985 35677889999999986 35567889999999999999974
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=334.47 Aligned_cols=345 Identities=18% Similarity=0.178 Sum_probs=240.3
Q ss_pred EEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccC
Q 008024 65 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 144 (580)
Q Consensus 65 ~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 144 (580)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4444555544 566543 346777777777777666677777777777777777777666777777777777777777
Q ss_pred cCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCc
Q 008024 145 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP 223 (580)
Q Consensus 145 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 223 (580)
.+++..+..+..++. |++|++++|++.+..+..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+++..+
T Consensus 91 ~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 777433344556665 7777777777776667777777777777777777776655544 67777777777777776666
Q ss_pred ccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccc
Q 008024 224 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 303 (580)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 303 (580)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+.|++++|.+++..+..+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----- 244 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV----- 244 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-----
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-----
Confidence 667777778888888887777666677777788888887777666666665556678888888877763222222
Q ss_pred cccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccE
Q 008024 304 WRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 383 (580)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 383 (580)
..+++|+.
T Consensus 245 ------------------------------------------------------------------------~~l~~L~~ 252 (477)
T 2id5_A 245 ------------------------------------------------------------------------RHLVYLRF 252 (477)
T ss_dssp ------------------------------------------------------------------------TTCTTCCE
T ss_pred ------------------------------------------------------------------------cCccccCe
Confidence 22456777
Q ss_pred EEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcc
Q 008024 384 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 463 (580)
Q Consensus 384 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 463 (580)
|+|++|.+++..+..+..+++|++|+|++|++++..|..|..+++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 88888887766666777788888888888888777777788888888888888888866666777777888888888887
Q ss_pred cccCCCCCcccccCCcccCCCcCCCCcc
Q 008024 464 SGRTPDKGQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 464 ~~~~p~~~~~~~~~~~~~~gN~~lc~~~ 491 (580)
.+..+....+.......+.++...|..|
T Consensus 333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 333 ACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp ECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred cCccchHhHHhhhhccccCccCceeCCc
Confidence 7654432222222334566777777554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-37 Score=324.20 Aligned_cols=342 Identities=26% Similarity=0.359 Sum_probs=279.6
Q ss_pred CCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-----cCCCCcEEEcccccccCccchHHhcCCCCCcEEE
Q 008024 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD 92 (580)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 92 (580)
.+++++.|+++++.++ .+| .+..+++|++|++++|.+++ .+++|++|++++|.+++ ++. +.++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc-Chh--hcCCCCCCEEE
Confidence 4678999999999988 455 37889999999999998875 67889999999998884 444 67899999999
Q ss_pred cccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCC
Q 008024 93 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 172 (580)
Q Consensus 93 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~ 172 (580)
+++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+ .+. +..++. |+.|++++|.++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~-~~~-~~~l~~-L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTD-LKP-LANLTT-LERLDISSNKVS 190 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCC-CGG-GTTCTT-CCEEECCSSCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccC-chh-hccCCC-CCEEECcCCcCC
Confidence 99999886543 8889999999999999874 33 48889999999986 45543 332 777776 999999999987
Q ss_pred CccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccC
Q 008024 173 GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 252 (580)
Q Consensus 173 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 252 (580)
+. ..+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 53 347888999999999998887655 44688999999999998864 467788899999999999986544 788
Q ss_pred CCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCC
Q 008024 253 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG 332 (580)
Q Consensus 253 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (580)
+++|++|++++|.+++..+ +..+++|+.|++++|++++..| +
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~---------------------------------- 305 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I---------------------------------- 305 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G----------------------------------
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h----------------------------------
Confidence 8999999999999985433 7888999999999998874322 1
Q ss_pred CCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcC
Q 008024 333 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN 412 (580)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 412 (580)
..+++|+.|++++|++++..| +..+++|+.|++++
T Consensus 306 -------------------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 306 -------------------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp -------------------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred -------------------------------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 235688899999999997655 78999999999999
Q ss_pred CccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCccccc
Q 008024 413 NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGR 466 (580)
Q Consensus 413 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 466 (580)
|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999864 468999999999999999998776 88999999999999999874
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.2e-37 Score=319.20 Aligned_cols=338 Identities=28% Similarity=0.371 Sum_probs=288.4
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-----cCCCCcEEEcccccccC
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-----EMKELSLLDLSRNYFSG 75 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n~~~~ 75 (580)
|+++++.++.. + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ .+++|++|++++|.+++
T Consensus 51 L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 51 LQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp EECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred EecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCC
Confidence 46788888873 3 48899999999999999996544 9999999999999999886 78999999999999984
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHh
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 155 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 155 (580)
++. +.++++|++|++++|.+.+. ..+.++++|++|+++ +.+.+.. .+..+++|++|++++|.+++ ++ .+.
T Consensus 127 -~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~-~l~ 196 (466)
T 1o6v_A 127 -IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLA 196 (466)
T ss_dssp -CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGG
T ss_pred -ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC-Ch-hhc
Confidence 454 68899999999999999863 358999999999997 4555332 38999999999999999984 44 477
Q ss_pred hccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEE
Q 008024 156 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 235 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 235 (580)
.++. |++|++++|.+++..+ ++.+++|+.|++++|.+.+. +....+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 197 ~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred cCCC-CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 7777 9999999999997655 77899999999999999865 344489999999999999997655 8889999999
Q ss_pred EcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCccccc
Q 008024 236 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS 315 (580)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 315 (580)
++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +
T Consensus 271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~----------------- 327 (466)
T 1o6v_A 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V----------------- 327 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G-----------------
T ss_pred ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h-----------------
Confidence 999999996543 8889999999999999986544 8899999999999999986433 1
Q ss_pred CCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccC
Q 008024 316 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI 395 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 395 (580)
..+++|+.|++++|.+++.
T Consensus 328 ------------------------------------------------------------~~l~~L~~L~l~~n~l~~~- 346 (466)
T 1o6v_A 328 ------------------------------------------------------------SSLTKLQRLFFYNNKVSDV- 346 (466)
T ss_dssp ------------------------------------------------------------GGCTTCCEEECCSSCCCCC-
T ss_pred ------------------------------------------------------------ccCccCCEeECCCCccCCc-
Confidence 2356889999999999864
Q ss_pred ChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccc
Q 008024 396 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 446 (580)
Q Consensus 396 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 446 (580)
..+..+++|+.|++++|++++..| +..+++|+.|++++|++++ +|..
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence 578999999999999999998777 8999999999999999996 4443
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-37 Score=336.25 Aligned_cols=404 Identities=20% Similarity=0.224 Sum_probs=306.9
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYF 73 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~ 73 (580)
|||++|+|+++.+.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++ .+++|++|++++|.+
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 6899999999999999999999999999999998777889999999999999999875 689999999999999
Q ss_pred cCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCC----CEEEccCCcCCccccccccCCCcccEEecccCc----
Q 008024 74 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL----RHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM---- 145 (580)
Q Consensus 74 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~---- 145 (580)
++......+..+++|++|++++|.+++..+..+..+.++ ..++++.|.+....+.. .....++.+++.+|.
T Consensus 161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLN 239 (635)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHH
T ss_pred ccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhccccccc
Confidence 853333445789999999999999998877777655443 35777777766332222 222223333333221
Q ss_pred ------------------------------------------------------------------------------CC
Q 008024 146 ------------------------------------------------------------------------------LS 147 (580)
Q Consensus 146 ------------------------------------------------------------------------------l~ 147 (580)
+.
T Consensus 240 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (635)
T 4g8a_A 240 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE 319 (635)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE
T ss_pred ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc
Confidence 11
Q ss_pred CCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCC--CCccc
Q 008024 148 GHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG--LIPGE 225 (580)
Q Consensus 148 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~ 225 (580)
. + ..+.... .++.|++.+|.+.+..+ ..+..|+.+++..|...... ....+++|+.+++++|.+.. ..+..
T Consensus 320 ~-~-~~~~~~~-~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 320 R-V-KDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp E-C-GGGGSCC-CCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred c-c-cccccch-hhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc-ccccccccccchhhccccccccccccc
Confidence 0 0 0112222 37788888888765433 34578889999998876433 33478999999999998863 34556
Q ss_pred ccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCCh-hhhcCCCCCCEEECcCCcccccCChhhhccccc
Q 008024 226 LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 304 (580)
Q Consensus 226 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 304 (580)
+..+.+|+.+++..+.+.. .+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+.+..|..+..+..+
T Consensus 393 ~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 6778899999999998874 45667788999999998887765443 457788999999999999988777776665544
Q ss_pred ccccC--CcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeeccccccccc
Q 008024 305 RVGSD--DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 382 (580)
Q Consensus 305 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 382 (580)
+.... +.... .........+++|+
T Consensus 472 ~~L~Ls~N~~~~------------------------------------------------------~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 472 EVLKMAGNSFQE------------------------------------------------------NFLPDIFTELRNLT 497 (635)
T ss_dssp CEEECTTCEEGG------------------------------------------------------GEECSCCTTCTTCC
T ss_pred hhhhhhhccccc------------------------------------------------------ccCchhhhhccccC
Confidence 33110 00000 00000124578999
Q ss_pred EEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccC-CcCCeeeCcCC
Q 008024 383 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL-NFLSIFNVSYN 461 (580)
Q Consensus 383 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L~Ls~N 461 (580)
.|||++|++++..|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++..|..+..+ ++|++|++++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999988 68999999999
Q ss_pred cccccC
Q 008024 462 NLSGRT 467 (580)
Q Consensus 462 ~l~~~~ 467 (580)
+++..-
T Consensus 578 p~~C~C 583 (635)
T 4g8a_A 578 DFACTC 583 (635)
T ss_dssp CBCCSG
T ss_pred CCcccC
Confidence 998644
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=319.08 Aligned_cols=347 Identities=20% Similarity=0.186 Sum_probs=280.3
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcc
Q 008024 23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 102 (580)
Q Consensus 23 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~ 102 (580)
+.++.++++++ .+|..+. +++++|+|++|.++ .++...|.++++|++|++++|.+++..
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~------------------~~~~~~~~~l~~L~~L~L~~n~i~~~~ 72 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK------------------TLNQDEFASFPHLEELELNENIVSAVE 72 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC------------------EECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc------------------eECHhHccCCCCCCEEECCCCccCEeC
Confidence 56777777777 5565443 46666666666665 455555678888999999999888877
Q ss_pred cccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCC
Q 008024 103 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 182 (580)
Q Consensus 103 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 182 (580)
|..|.++++|++|++++|.++...+..|.++++|++|++++|.+++..|..+..++. |+.|++++|.+++..+..|..+
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTC
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCC
Confidence 888888899999999999888666667788899999999999888777777877777 9999999999988788888999
Q ss_pred CCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEc
Q 008024 183 ERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 261 (580)
Q Consensus 183 ~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 261 (580)
++|+.|++++|.+++..+..+ .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.......+|++|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 999999999999887666544 7899999999999998887778899999999999999888777777777779999999
Q ss_pred CCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCcccc
Q 008024 262 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 341 (580)
Q Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (580)
++|.+++..+..+..+++|+.|++++|++++..+..+
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------------------------------------------- 268 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML------------------------------------------- 268 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC-------------------------------------------
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCCccChhhc-------------------------------------------
Confidence 9999997666789999999999999999986554433
Q ss_pred chhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccch
Q 008024 342 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE 421 (580)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 421 (580)
..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+.
T Consensus 269 ----------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 269 ----------------------------------HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp ----------------------------------TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred ----------------------------------cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 2346788899999999998899999999999999999999987778
Q ss_pred hhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCC
Q 008024 422 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 422 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 469 (580)
.|..+++|++|+|++|.+.+..+.. .-...+..+++..+.....-|.
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred HcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence 8999999999999999998654321 1122344455666666555553
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-36 Score=309.43 Aligned_cols=334 Identities=21% Similarity=0.228 Sum_probs=277.5
Q ss_pred CCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEE
Q 008024 60 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 139 (580)
Q Consensus 60 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 139 (580)
++++++|++++|.++ .+|..++.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 456666666666666 7888888999999999999999998888899999999999999999998888889999999999
Q ss_pred ecccCcCCCCChhH-HhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCC
Q 008024 140 DISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 218 (580)
Q Consensus 140 ~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l 218 (580)
++++|.++ .+|.. +..++. |++|++++|.+++..+..+..+++|++|++++|.+++.. ...+++|+.|++++|.+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred ECCCCccC-cCCHHHhcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc
Confidence 99999999 56655 567777 999999999999888888999999999999999998653 33678999999999988
Q ss_pred CCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhh
Q 008024 219 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 298 (580)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 298 (580)
++. ...++|+.|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 742 3446899999999999854 332 357899999999999853 578899999999999999987666554
Q ss_pred hcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeeccccc
Q 008024 299 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNV 378 (580)
Q Consensus 299 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 378 (580)
. .+
T Consensus 269 ~-----------------------------------------------------------------------------~l 271 (390)
T 3o6n_A 269 V-----------------------------------------------------------------------------KM 271 (390)
T ss_dssp T-----------------------------------------------------------------------------TC
T ss_pred c-----------------------------------------------------------------------------cc
Confidence 3 34
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
++|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+++. +| +..+++|+.|++
T Consensus 272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEc
Confidence 678889999999984 6666788999999999999998 678788999999999999999985 43 677889999999
Q ss_pred cCCcccccCCCCCcccccCCcccCCCcCCCCcc
Q 008024 459 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 459 s~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~ 491 (580)
++|++++.... ..+..+....+.+++..|.++
T Consensus 347 ~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 347 SHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 99999874322 334455556677888888643
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=308.58 Aligned_cols=331 Identities=21% Similarity=0.222 Sum_probs=273.0
Q ss_pred CCCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc----cCCCCcEEEcccccccCc
Q 008024 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG----EMKELSLLDLSRNYFSGG 76 (580)
Q Consensus 1 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~l~~L~~L~Ls~n~~~~~ 76 (580)
|+|++|.+++. | .+.++++|++|++++|.+++. | ++.+++|++|++++|.+++ .+++|++|++++|.+++
T Consensus 47 L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~- 120 (457)
T 3bz5_A 47 LDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK- 120 (457)
T ss_dssp EECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-
T ss_pred EEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-
Confidence 57999999985 4 799999999999999999964 4 8999999999999999986 78999999999999985
Q ss_pred cchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhh
Q 008024 77 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 156 (580)
Q Consensus 77 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 156 (580)
++ +..+++|++|++++|.+++. .++++++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..
T Consensus 121 l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 121 LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--ccc
Confidence 55 57899999999999999974 3889999999999999655455 47889999999999999995 55 677
Q ss_pred ccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCC------
Q 008024 157 FSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC------ 230 (580)
Q Consensus 157 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------ 230 (580)
++. |+.|++++|++++. .++.+++|+.|++++|++++.+ ...+++|+.|++++|.+++..+..+..+.
T Consensus 190 l~~-L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 190 NKL-LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp CTT-CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred CCC-CCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 776 99999999999964 4889999999999999999853 45899999999999999987554444333
Q ss_pred -CCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhh--------hcCCCCCCEEECcCCcccccCChhhhcc
Q 008024 231 -KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ--------LCQLQKLAMMDLSRNKFSGSIPPCFANV 301 (580)
Q Consensus 231 -~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 301 (580)
+|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.. +..+++|++|++++|++++. + +
T Consensus 264 n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l--- 335 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--V--- 335 (457)
T ss_dssp CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--C---
T ss_pred CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--c---
Confidence 44556666666555555 467899999999999876665532 45567788888888877652 1 1
Q ss_pred cccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccc
Q 008024 302 LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 381 (580)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 381 (580)
..+++|
T Consensus 336 --------------------------------------------------------------------------~~l~~L 341 (457)
T 3bz5_A 336 --------------------------------------------------------------------------SHNTKL 341 (457)
T ss_dssp --------------------------------------------------------------------------TTCTTC
T ss_pred --------------------------------------------------------------------------ccCCcC
Confidence 245788
Q ss_pred cEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCcccccc
Q 008024 382 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA 449 (580)
Q Consensus 382 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 449 (580)
+.||+++|++++ ++.|..|++++|.+.|. ..+..|+.+|+++|+++|.+|..+..
T Consensus 342 ~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 342 KSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp SEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred cEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 999999999985 35677889999999976 35678999999999999999987644
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-36 Score=322.08 Aligned_cols=335 Identities=20% Similarity=0.216 Sum_probs=285.5
Q ss_pred cCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccE
Q 008024 59 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 138 (580)
Q Consensus 59 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 138 (580)
.+++++.+++++|.+. .+|..++.++++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|+.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3566777777777776 788888899999999999999999888889999999999999999999888888999999999
Q ss_pred EecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCC
Q 008024 139 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 218 (580)
Q Consensus 139 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l 218 (580)
|++++|.+++..+..++.++. |++|++++|.+++..|..+..+++|++|++++|.+++.. ...+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc
Confidence 999999999444444577777 999999999999888889999999999999999998753 23588999999999988
Q ss_pred CCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhh
Q 008024 219 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 298 (580)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 298 (580)
++ +...++|+.|++++|.+....+ .+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 74 3445689999999999985433 22 3689999999999986 4678999999999999999998777665
Q ss_pred hcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeeccccc
Q 008024 299 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNV 378 (580)
Q Consensus 299 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 378 (580)
.. +
T Consensus 275 ~~-----------------------------------------------------------------------------l 277 (597)
T 3oja_B 275 VK-----------------------------------------------------------------------------M 277 (597)
T ss_dssp TT-----------------------------------------------------------------------------C
T ss_pred cC-----------------------------------------------------------------------------c
Confidence 33 4
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..++.|+.|++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l 352 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 352 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence 678889999999995 6777788999999999999999 7888899999999999999999854 3 677889999999
Q ss_pred cCCcccccCCCCCcccccCCcccCCCcCCCCc
Q 008024 459 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAW 490 (580)
Q Consensus 459 s~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~ 490 (580)
++|++++..+. ..+..+....+.+++..|+.
T Consensus 353 ~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 353 SHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred eCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 99999876432 34556666778899999975
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-34 Score=300.70 Aligned_cols=362 Identities=23% Similarity=0.272 Sum_probs=208.6
Q ss_pred CCCCCCCCCchhhccCCCCCc-------------CEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc---cCCCCcE
Q 008024 2 NLERNFIGSPLITCLKNLTRL-------------KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG---EMKELSL 65 (580)
Q Consensus 2 ~L~~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~l~~L~~ 65 (580)
+|++|.+.+..|..++++++| ++|++++|.+++ +|.. .++|++|++++|.+++ .+++|++
T Consensus 40 ~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~lp~~~~~L~~ 115 (454)
T 1jl5_A 40 YNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTELPELPQSLKS 115 (454)
T ss_dssp HHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCCCCTTCCE
T ss_pred hccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCccccccCCCcE
Confidence 456666776777777777654 777777777774 3431 3577777777777765 3467777
Q ss_pred EEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCc
Q 008024 66 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM 145 (580)
Q Consensus 66 L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 145 (580)
|++++|.+++ ++.. .++|++|++++|.+++ +| .++++++|++|++++|++++ +|.. ..+|++|++++|.
T Consensus 116 L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 116 LLVDNNNLKA-LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQ 184 (454)
T ss_dssp EECCSSCCSC-CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred EECCCCccCc-ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCc
Confidence 7777777763 3321 2577777777777775 44 47777777777777777764 4443 2477777777777
Q ss_pred CCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCccc
Q 008024 146 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGE 225 (580)
Q Consensus 146 l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 225 (580)
+++ +| .++.++. |+.|++++|++++ +|... ++|++|++++|.+.. .+....+++|++|++++|++++ +|..
T Consensus 185 l~~-l~-~~~~l~~-L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-l~~~ 255 (454)
T 1jl5_A 185 LEE-LP-ELQNLPF-LTAIYADNNSLKK-LPDLP---LSLESIVAGNNILEE-LPELQNLPFLTTIYADNNLLKT-LPDL 255 (454)
T ss_dssp CSS-CC-CCTTCTT-CCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCSC
T ss_pred CCc-Cc-cccCCCC-CCEEECCCCcCCc-CCCCc---CcccEEECcCCcCCc-ccccCCCCCCCEEECCCCcCCc-cccc
Confidence 774 55 4666666 7777777777764 34322 467777777777763 3344467777777777777764 3332
Q ss_pred ccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccc
Q 008024 226 LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 305 (580)
Q Consensus 226 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 305 (580)
.++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. -.++|++|++++|++++ ++.....+..+.
T Consensus 256 ---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~~~~~L~~L~ 323 (454)
T 1jl5_A 256 ---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCDLPPSLEELN 323 (454)
T ss_dssp ---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECCCCTTCCEEE
T ss_pred ---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccCCcCcCCEEE
Confidence 3567777777777764 4433 3667777777777764 121 11567777777777764 221111111111
Q ss_pred cccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEE
Q 008024 306 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD 385 (580)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 385 (580)
... +.+.+ .+ ..+++|+.|+
T Consensus 324 Ls~-N~l~~----------------------------------------------------------lp-~~~~~L~~L~ 343 (454)
T 1jl5_A 324 VSN-NKLIE----------------------------------------------------------LP-ALPPRLERLI 343 (454)
T ss_dssp CCS-SCCSC----------------------------------------------------------CC-CCCTTCCEEE
T ss_pred CCC-Ccccc----------------------------------------------------------cc-ccCCcCCEEE
Confidence 100 00000 00 1246889999
Q ss_pred ccCCcCcccCChhhhccccCCeeeCcCCcccc--ccchhhhCc-------------ccCCeEeCCCCeeee--cCccccc
Q 008024 386 LSCNQLTGEIPSDIGQLQAILALNLSNNSLSG--SIPESFSNL-------------KMIESLDISYNKLTG--QIPPQLT 448 (580)
Q Consensus 386 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------------~~L~~LdLs~N~l~~--~~p~~l~ 448 (580)
+++|+++ .+|. .+++|++|++++|++++ .+|.+++.+ ++|++||+++|++++ .+|.+
T Consensus 344 L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s-- 417 (454)
T 1jl5_A 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES-- 417 (454)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred CCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh--
Confidence 9999998 5776 47899999999999998 788888888 899999999999997 66654
Q ss_pred cCCcCCeeeCcCCcccccCCC
Q 008024 449 ALNFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 449 ~l~~L~~L~Ls~N~l~~~~p~ 469 (580)
++.|.+++|.+.+.+|.
T Consensus 418 ----l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 418 ----VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ---------------------
T ss_pred ----HhheeCcCcccCCcccc
Confidence 56667888888766553
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.1e-36 Score=295.18 Aligned_cols=254 Identities=35% Similarity=0.561 Sum_probs=219.3
Q ss_pred CcEEEeecCcCCC--ccCccCCCCCCCCEEEccC-CCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEE
Q 008024 161 LEILSMSKNHLEG--NVPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 236 (580)
Q Consensus 161 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 236 (580)
++.|++++|.+++ .+|..+.++++|++|++++ |.+.+..+..+ .+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 6667777777766 6666777777777777773 66665555444 677778888888888777888888899999999
Q ss_pred cccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCC-CCCEEECcCCcccccCChhhhcccccccccCCccccc
Q 008024 237 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS 315 (580)
Q Consensus 237 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 315 (580)
+++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..+
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-------------- 197 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------- 197 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--------------
Confidence 999999988999999999999999999999888999999988 99999999999998888765432
Q ss_pred CCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccC
Q 008024 316 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI 395 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 395 (580)
+ |+.|++++|.+++..
T Consensus 198 ---------------------------------------------------------------~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 198 ---------------------------------------------------------------N-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp ---------------------------------------------------------------C-CSEEECCSSEEEECC
T ss_pred ---------------------------------------------------------------c-ccEEECcCCcccCcC
Confidence 2 778999999999999
Q ss_pred ChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccc
Q 008024 396 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFAT 475 (580)
Q Consensus 396 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 475 (580)
|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~ 292 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR 292 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGG
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccc
Confidence 99999999999999999999976666 88999999999999999999999999999999999999999999999988999
Q ss_pred cCCcccCCCcCCCCcccc
Q 008024 476 FDESSYRGNPSLCAWLIQ 493 (580)
Q Consensus 476 ~~~~~~~gN~~lc~~~l~ 493 (580)
++...+.|||++||.|+.
T Consensus 293 L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 293 FDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp SCGGGTCSSSEEESTTSS
T ss_pred cChHHhcCCCCccCCCCC
Confidence 999999999999998765
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4e-34 Score=287.70 Aligned_cols=305 Identities=24% Similarity=0.359 Sum_probs=177.5
Q ss_pred CCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCc
Q 008024 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 97 (580)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 97 (580)
.+++|++|+++++.+.. ++ .+..+++|++|++++|.++ .++. +.++++|++|++++|.
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~------------------~~~~--~~~l~~L~~L~L~~n~ 99 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT------------------DISP--LSNLVKLTNLYIGTNK 99 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC------------------CCGG--GTTCTTCCEEECCSSC
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc------------------cchh--hhcCCcCCEEEccCCc
Confidence 44455555555555542 22 2444444444444444443 2333 3455555555555555
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCc
Q 008024 98 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 177 (580)
Q Consensus 98 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~ 177 (580)
++.. +.+.++++|++|++++|.+++. +. +..+++|++|++++|.....++
T Consensus 100 i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-------------------------- 149 (347)
T 4fmz_A 100 ITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-------------------------- 149 (347)
T ss_dssp CCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG--------------------------
T ss_pred ccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc--------------------------
Confidence 5532 2355555555555555555432 22 4455555555555553332222
Q ss_pred cCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCcc
Q 008024 178 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 257 (580)
Q Consensus 178 ~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 257 (580)
.+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 150 ~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 224 (347)
T 4fmz_A 150 PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence 24444555555555555443332 2245556666666665554322 5566667777777776664332 56667777
Q ss_pred EEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCC
Q 008024 258 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSS 337 (580)
Q Consensus 258 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (580)
+|++++|.+++. +. +..+++|++|++++|.+++. + .+
T Consensus 225 ~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~--------------------------------------- 261 (347)
T 4fmz_A 225 SLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI-N-AV--------------------------------------- 261 (347)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-G-GG---------------------------------------
T ss_pred EEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC-h-hH---------------------------------------
Confidence 777777777643 33 66777777777777776531 1 11
Q ss_pred ccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCcccc
Q 008024 338 NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSG 417 (580)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 417 (580)
..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 262 --------------------------------------~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 262 --------------------------------------KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp --------------------------------------TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG
T ss_pred --------------------------------------hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence 2345677788888877743 357778888888888888887
Q ss_pred ccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCccc
Q 008024 418 SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 464 (580)
Q Consensus 418 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 464 (580)
..|..++.+++|++|+|++|++++..| +..+++|++|++++|+++
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 777888888888888888888886555 777888888888888774
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.8e-34 Score=286.00 Aligned_cols=303 Identities=19% Similarity=0.307 Sum_probs=242.4
Q ss_pred CCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcE
Q 008024 84 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI 163 (580)
Q Consensus 84 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 163 (580)
.+++|++|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.++ .++ .+..++. |++
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~-L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTN-LRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTT-CSE
T ss_pred hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch-HHcCCCc-CCE
Confidence 356677777777766532 2 366677777777777777643 33 677777777777777776 343 4666666 888
Q ss_pred EEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccc
Q 008024 164 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243 (580)
Q Consensus 164 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (580)
|++++|.+++.. . +..+++|+.|++++|......+....+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 115 L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred EECcCCcccCch-h-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 888888887433 3 788899999999999766666666689999999999999986544 888999999999999998
Q ss_pred ccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCcccc
Q 008024 244 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 323 (580)
Q Consensus 244 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 323 (580)
+. +. +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +
T Consensus 191 ~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~------------------------- 239 (347)
T 4fmz_A 191 DI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L------------------------- 239 (347)
T ss_dssp CC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G-------------------------
T ss_pred cc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h-------------------------
Confidence 54 33 8889999999999999986444 8899999999999999874322 1
Q ss_pred chhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccc
Q 008024 324 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 403 (580)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 403 (580)
..+++|+.|++++|.+++ + +.+..++
T Consensus 240 ----------------------------------------------------~~l~~L~~L~l~~n~l~~-~-~~~~~l~ 265 (347)
T 4fmz_A 240 ----------------------------------------------------ANLSQLTWLEIGTNQISD-I-NAVKDLT 265 (347)
T ss_dssp ----------------------------------------------------TTCTTCCEEECCSSCCCC-C-GGGTTCT
T ss_pred ----------------------------------------------------hcCCCCCEEECCCCccCC-C-hhHhcCC
Confidence 245788999999999985 3 5689999
Q ss_pred cCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCCCCcccccCCcccCC
Q 008024 404 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRG 483 (580)
Q Consensus 404 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~g 483 (580)
+|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|++|++++|++++.+| ...+..++...+.+
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence 999999999999854 458999999999999999999999999999999999999999998877 56677788888888
Q ss_pred Cc
Q 008024 484 NP 485 (580)
Q Consensus 484 N~ 485 (580)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 86
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-34 Score=296.69 Aligned_cols=312 Identities=21% Similarity=0.235 Sum_probs=244.2
Q ss_pred CCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcC
Q 008024 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 98 (580)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i 98 (580)
++++++|++++|.++...+..|.++++|++|++++|.++ .++...+.++++|++|++++|.+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~------------------~~~~~~~~~l~~L~~L~L~~n~l 105 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------------------EIDTYAFAYAHTIQKLYMGFNAI 105 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC------------------EECTTTTTTCTTCCEEECCSSCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc------------------ccChhhccCCCCcCEEECCCCCC
Confidence 466666677666666444444566666666666666655 55555567788888888888888
Q ss_pred CCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCcc
Q 008024 99 EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 178 (580)
Q Consensus 99 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~ 178 (580)
++..|..+.++++|++|++++|.++...+..+..+++|++|++++|.+++..|..+..++. |++|++++|++++. .
T Consensus 106 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~---~ 181 (390)
T 3o6n_A 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHV---D 181 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT-CCEEECCSSCCSBC---C
T ss_pred CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC-CCEEECCCCcCCcc---c
Confidence 8777777888888888888888888544455678888888888888888666666777776 88888888888754 2
Q ss_pred CCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccE
Q 008024 179 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 258 (580)
Q Consensus 179 ~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 258 (580)
+..+++|+.|++++|.+++.. ..++|++|++++|.++.. |.. ..++|+.|++++|.+++. .++..+++|++
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 252 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVE 252 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cccccccceeecccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccE
Confidence 456788889999988876432 345789999999988754 332 246899999999999854 57888999999
Q ss_pred EEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCc
Q 008024 259 LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSN 338 (580)
Q Consensus 259 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (580)
|++++|.+++..|..+..+++|++|++++|++++. |..+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~---------------------------------------- 291 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG---------------------------------------- 291 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSS----------------------------------------
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCccc-Cccc----------------------------------------
Confidence 99999999988888999999999999999998742 2111
Q ss_pred cccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccc
Q 008024 339 TMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS 418 (580)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 418 (580)
..+++|+.|++++|+++ .+|..++.+++|+.|+|++|++++
T Consensus 292 -------------------------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~- 332 (390)
T 3o6n_A 292 -------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT- 332 (390)
T ss_dssp -------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-
T ss_pred -------------------------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-
Confidence 23578999999999998 678889999999999999999984
Q ss_pred cchhhhCcccCCeEeCCCCeeeecC
Q 008024 419 IPESFSNLKMIESLDISYNKLTGQI 443 (580)
Q Consensus 419 ~p~~~~~l~~L~~LdLs~N~l~~~~ 443 (580)
+| +..+++|+.|++++|++++..
T Consensus 333 ~~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 333 LK--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CC--CCTTCCCSEEECCSSCEEHHH
T ss_pred eC--chhhccCCEEEcCCCCccchh
Confidence 44 778899999999999999653
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.1e-34 Score=306.79 Aligned_cols=312 Identities=21% Similarity=0.218 Sum_probs=242.6
Q ss_pred CCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCC
Q 008024 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 99 (580)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~ 99 (580)
.+++.|++++|.+....+..|.++++|++|+|++|.+ + .++...+.++++|++|++++|.++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-----------------~-~~~~~~~~~l~~L~~L~L~~n~l~ 112 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-----------------E-EIDTYAFAYAHTIQKLYMGFNAIR 112 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-----------------C-EECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-----------------C-CCChHHhcCCCCCCEEECCCCcCC
Confidence 4455555555555543344445555555555555544 4 455555678888999999988888
Q ss_pred CcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccC
Q 008024 100 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL 179 (580)
Q Consensus 100 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 179 (580)
+..|..|+++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..++. |++|++++|.+++.. +
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~---~ 188 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---L 188 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECTTSCCSBCC---G
T ss_pred CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc-CcEEECcCCCCCCcC---h
Confidence 887778888889999999998888655566788889999999999888777777888777 999999999888542 4
Q ss_pred CCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEE
Q 008024 180 NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 259 (580)
Q Consensus 180 ~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 259 (580)
..+++|+.|++++|.+++.. ..++|+.|++++|.++... ..+ .++|+.|++++|.+++ +.++..+++|+.|
T Consensus 189 ~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L 259 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVR-GPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEV 259 (597)
T ss_dssp GGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEE-CSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred hhhhhhhhhhcccCcccccc----CCchhheeeccCCcccccc-ccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEE
Confidence 55788899999998876532 3467899999999887443 222 3589999999999986 4678899999999
Q ss_pred EcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCcc
Q 008024 260 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNT 339 (580)
Q Consensus 260 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (580)
++++|.+++..|..+..+++|+.|++++|.+++. |..+
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~----------------------------------------- 297 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG----------------------------------------- 297 (597)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSS-----------------------------------------
T ss_pred ECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cccc-----------------------------------------
Confidence 9999999988899999999999999999998752 2211
Q ss_pred ccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCcccccc
Q 008024 340 MFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 419 (580)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 419 (580)
..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++.
T Consensus 298 ------------------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~- 339 (597)
T 3oja_B 298 ------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL- 339 (597)
T ss_dssp ------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred ------------------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-
Confidence 23568999999999998 7888899999999999999999854
Q ss_pred chhhhCcccCCeEeCCCCeeeecCc
Q 008024 420 PESFSNLKMIESLDISYNKLTGQIP 444 (580)
Q Consensus 420 p~~~~~l~~L~~LdLs~N~l~~~~p 444 (580)
| +..+++|+.|+|++|.+++..+
T Consensus 340 ~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 340 K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred C--hhhcCCCCEEEeeCCCCCChhH
Confidence 3 6778999999999999987543
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.4e-36 Score=317.92 Aligned_cols=353 Identities=19% Similarity=0.183 Sum_probs=192.0
Q ss_pred CCcCEEEccCCCCCCCCCcc-cCCCCCCCEEEcccCCCcc-----------cCCCCcEEEcccccccCccchHHhcCCC-
Q 008024 20 TRLKILDISSNQLNGSLPSV-ISNLTSLEYLDLSHNNFEG-----------EMKELSLLDLSRNYFSGGLSQSVVTGCF- 86 (580)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~-----------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~- 86 (580)
++|++|||++|+++...... +..+++|++|+|++|.+++ .+++|++|++++|.+++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45777788777776443332 5667777777777777662 2345555555555544333333334343
Q ss_pred ---CCcEEEcccCcCCC----cccccccCCCCCCEEEccCCcCCcccccccc-----CCCcccEEecccCcCCCCChhHH
Q 008024 87 ---SLELLDLSNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGLL-----SSTSLQVLDISNNMLSGHIPHWM 154 (580)
Q Consensus 87 ---~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~p~~~ 154 (580)
+|++|++++|.++. .++..+.++++|++|++++|.+++..+..+. ..++|++|++++|.+++..+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~- 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP- 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH-
Confidence 35555555555542 2244444455555555555544422222111 1234444444444444321111
Q ss_pred hhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc------CCCCccEEEcccCCCCCC----Ccc
Q 008024 155 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL------NLSSVEHLSLQKNALNGL----IPG 224 (580)
Q Consensus 155 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~------~l~~L~~L~L~~n~l~~~----~~~ 224 (580)
++..+..+++|++|++++|.++......+ ..++|++|++++|.+++. ++.
T Consensus 162 --------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 162 --------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp --------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred --------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 12233334455555555554433221111 234566666666666543 344
Q ss_pred cccCCCCCCEEEcccCcccccC-----CccccCCCCccEEEcCCCcCCCC----ChhhhcCCCCCCEEECcCCcccccCC
Q 008024 225 ELFRSCKLVTLNLRDNTFSGRI-----PHQINEHSNLRFLLLGGNHLQGP----IPDQLCQLQKLAMMDLSRNKFSGSIP 295 (580)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p 295 (580)
.+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 5556667777777777665432 22223466777777777776643 45556667777777777777654333
Q ss_pred hhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecc
Q 008024 296 PCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG 375 (580)
Q Consensus 296 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (580)
..+.... .
T Consensus 302 ~~l~~~l------------------------------------------------------------------------~ 309 (461)
T 1z7x_W 302 RLLCETL------------------------------------------------------------------------L 309 (461)
T ss_dssp HHHHHHH------------------------------------------------------------------------T
T ss_pred HHHHHHh------------------------------------------------------------------------c
Confidence 3222110 0
Q ss_pred cccccccEEEccCCcCccc----CChhhhccccCCeeeCcCCccccccchhhhC-----cccCCeEeCCCCeeee----c
Q 008024 376 SNVNRVTGLDLSCNQLTGE----IPSDIGQLQAILALNLSNNSLSGSIPESFSN-----LKMIESLDISYNKLTG----Q 442 (580)
Q Consensus 376 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~~----~ 442 (580)
...++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|+|++|++++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 1124667777777777654 3455566677777777777776555554443 5677777777777775 5
Q ss_pred CccccccCCcCCeeeCcCCcccc
Q 008024 443 IPPQLTALNFLSIFNVSYNNLSG 465 (580)
Q Consensus 443 ~p~~l~~l~~L~~L~Ls~N~l~~ 465 (580)
+|..+..+++|++|++++|++++
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHhCCCccEEECCCCCCCH
Confidence 66667777777777777777754
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-33 Score=279.33 Aligned_cols=251 Identities=29% Similarity=0.496 Sum_probs=171.3
Q ss_pred cccEEecccCcCCC--CChhHHhhccCCCcEEEeec-CcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccE
Q 008024 135 SLQVLDISNNMLSG--HIPHWMGNFSSELEILSMSK-NHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEH 210 (580)
Q Consensus 135 ~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~ 210 (580)
+++.|++++|.+++ .+|..+..++. |++|++++ |.+.+.+|..+.++++|++|++++|.+++..+..+ .+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 44555555555554 44555555444 55555552 55554555555555555555555555554444333 4555666
Q ss_pred EEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCC-CccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCc
Q 008024 211 LSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS-NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 289 (580)
Q Consensus 211 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (580)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 66666666666666677777777777777777777777777776 777777777777777777777776 7788888887
Q ss_pred ccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeecccc
Q 008024 290 FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 369 (580)
Q Consensus 290 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 369 (580)
+++..|..+.
T Consensus 209 l~~~~~~~~~---------------------------------------------------------------------- 218 (313)
T 1ogq_A 209 LEGDASVLFG---------------------------------------------------------------------- 218 (313)
T ss_dssp EEECCGGGCC----------------------------------------------------------------------
T ss_pred ccCcCCHHHh----------------------------------------------------------------------
Confidence 7765554432
Q ss_pred ceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCcccccc
Q 008024 370 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA 449 (580)
Q Consensus 370 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 449 (580)
.+++|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..|..+++|++|+|++|++++.+|.. ..
T Consensus 219 -------~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 219 -------SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp -------TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred -------cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 235677788888888765554 777888888888888888888888888888999999999998888876 77
Q ss_pred CCcCCeeeCcCCc-cccc
Q 008024 450 LNFLSIFNVSYNN-LSGR 466 (580)
Q Consensus 450 l~~L~~L~Ls~N~-l~~~ 466 (580)
+++|+.+++++|+ +.|.
T Consensus 290 l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGGSCGGGTCSSSEEEST
T ss_pred ccccChHHhcCCCCccCC
Confidence 8888889998888 5553
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.7e-35 Score=306.36 Aligned_cols=353 Identities=18% Similarity=0.160 Sum_probs=258.1
Q ss_pred CCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCC----cccccccCCCCCCEEEccCCcCCccccccc-cCCC-
Q 008024 61 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGL-LSST- 134 (580)
Q Consensus 61 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~- 134 (580)
++|++||+++|.++......++..+++|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566777777776644445556778888888888888774 345567777888888888888765433333 2344
Q ss_pred ---cccEEecccCcCCC----CChhHHhhccCCCcEEEeecCcCCCccCccC-----CCCCCCCEEEccCCCCCCccc--
Q 008024 135 ---SLQVLDISNNMLSG----HIPHWMGNFSSELEILSMSKNHLEGNVPVQL-----NNLERLRILDISENRLSGPIA-- 200 (580)
Q Consensus 135 ---~L~~L~l~~n~l~~----~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~ls~n~l~~~~~-- 200 (580)
+|++|++++|.+++ .++..+..++. |++|++++|.+++..+..+ ...++|++|++++|.+++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT-LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTT-CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCc-eeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888888874 34666777776 8888888888865433322 235689999999998886442
Q ss_pred --cCc-CCCCccEEEcccCCCCCCCccccc-----CCCCCCEEEcccCccccc----CCccccCCCCccEEEcCCCcCCC
Q 008024 201 --SSL-NLSSVEHLSLQKNALNGLIPGELF-----RSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQG 268 (580)
Q Consensus 201 --~~~-~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~ 268 (580)
..+ .+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 222 578999999999998765444443 256999999999999864 56777889999999999999875
Q ss_pred CC-----hhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccch
Q 008024 269 PI-----PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 343 (580)
Q Consensus 269 ~~-----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (580)
.. +..+..+++|++|++++|.+++.....+...
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------------------------------ 279 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV------------------------------------------ 279 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH------------------------------------------
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH------------------------------------------
Confidence 43 2223358999999999999875321111110
Q ss_pred hhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhcc-----ccCCeeeCcCCccccc
Q 008024 344 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQL-----QAILALNLSNNSLSGS 418 (580)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~ 418 (580)
...+++|+.|++++|.+.+..+..+... ++|++|+|++|.+++.
T Consensus 280 -------------------------------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 280 -------------------------------LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp -------------------------------HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred -------------------------------HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 0235689999999999986655555543 6999999999999865
Q ss_pred ----cchhhhCcccCCeEeCCCCeeeecCcccccc-----CCcCCeeeCcCCcccc----cCCCC-CcccccCCcccCCC
Q 008024 419 ----IPESFSNLKMIESLDISYNKLTGQIPPQLTA-----LNFLSIFNVSYNNLSG----RTPDK-GQFATFDESSYRGN 484 (580)
Q Consensus 419 ----~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~-~~~~~~~~~~~~gN 484 (580)
++..+..+++|++|||++|++++..+..+.. .+.|++|++++|++++ .+|.. ....+++...+.+|
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 5677888899999999999999766665553 6799999999999985 55542 33556777788888
Q ss_pred cCC
Q 008024 485 PSL 487 (580)
Q Consensus 485 ~~l 487 (580)
+..
T Consensus 409 ~i~ 411 (461)
T 1z7x_W 409 CLG 411 (461)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.7e-32 Score=271.38 Aligned_cols=290 Identities=21% Similarity=0.276 Sum_probs=169.8
Q ss_pred CCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEec
Q 008024 62 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 141 (580)
Q Consensus 62 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 141 (580)
+++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666665 555543 246666666666666555556666666666666666666555666666666666666
Q ss_pred ccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCC
Q 008024 142 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 221 (580)
Q Consensus 142 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 221 (580)
++|.++ .+|..+. + +|++|++++|++++..+..+..+++|+.|++++|.++.. +.
T Consensus 110 ~~n~l~-~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------GF 164 (332)
T ss_dssp CSSCCC-SCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------GS
T ss_pred CCCcCC-ccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------CC
Confidence 666665 4444332 2 266666666666544444455555555555555554320 12
Q ss_pred CcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcc
Q 008024 222 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 301 (580)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 301 (580)
.+..+..+ +|+.|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-- 238 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-- 238 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh--
Confidence 33333333 55555555555553 333332 4566666666666655555666666666666666666544333321
Q ss_pred cccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccc
Q 008024 302 LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 381 (580)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 381 (580)
.+++|
T Consensus 239 ---------------------------------------------------------------------------~l~~L 243 (332)
T 2ft3_A 239 ---------------------------------------------------------------------------FLPTL 243 (332)
T ss_dssp ---------------------------------------------------------------------------GCTTC
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 23456
Q ss_pred cEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhC------cccCCeEeCCCCeee--ecCccccccCCcC
Q 008024 382 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN------LKMIESLDISYNKLT--GQIPPQLTALNFL 453 (580)
Q Consensus 382 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~--~~~p~~l~~l~~L 453 (580)
+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|.. ..+|+.|++++|.+. +..|..+..++.|
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence 66667666666 56666777777777777777777555555544 356777777777776 5666777777777
Q ss_pred CeeeCcCCc
Q 008024 454 SIFNVSYNN 462 (580)
Q Consensus 454 ~~L~Ls~N~ 462 (580)
+.+++++|+
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 777777764
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.7e-32 Score=269.98 Aligned_cols=249 Identities=26% Similarity=0.335 Sum_probs=194.1
Q ss_pred CcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCC
Q 008024 21 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG 100 (580)
Q Consensus 21 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~ 100 (580)
+++.++++++.++ .+|..+. ++|++|++++|.++ .++...+.++++|++|++++|.+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~------------------~~~~~~~~~l~~L~~L~L~~n~l~~ 92 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS------------------ELRKDDFKGLQHLYALVLVNNKISK 92 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC------------------EECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC------------------ccCHhHhhCCCCCcEEECCCCccCc
Confidence 5666666666665 4454432 45555555555544 5555556889999999999999998
Q ss_pred cccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCC--ccCcc
Q 008024 101 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQ 178 (580)
Q Consensus 101 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~--~~~~~ 178 (580)
..|..|.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..++. |+.|++++|.++. ..+..
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~ 168 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGA 168 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTS
T ss_pred cCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCccc
Confidence 88899999999999999999998 5565554 89999999999999655566777877 9999999999963 66777
Q ss_pred CCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccE
Q 008024 179 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 258 (580)
Q Consensus 179 ~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 258 (580)
+..+ +|+.|++++|.+++.+.... ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred ccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 8777 89999999999887544432 67888888888888777777888888888888888888777777888888888
Q ss_pred EEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhh
Q 008024 259 LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 298 (580)
Q Consensus 259 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 298 (580)
|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus 246 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp EECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred EECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 888888887 677778888888888888888875444433
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.8e-31 Score=266.28 Aligned_cols=224 Identities=20% Similarity=0.265 Sum_probs=151.5
Q ss_pred cEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEeccc
Q 008024 64 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 143 (580)
Q Consensus 64 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 143 (580)
++|++++|.++ .++...+.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|++++
T Consensus 55 ~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 55 ALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp CEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCS
T ss_pred eEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCC
Confidence 33333333333 455545567778888888888777766777777788888888887777 4454443 6777777777
Q ss_pred CcCCCCChhHHhhccCCCcEEEeecCcCCC--ccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCC
Q 008024 144 NMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 221 (580)
Q Consensus 144 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 221 (580)
|.+++..+..+..++. |++|++++|.++. ..+..+..+++|++|++++|.++...... .++|++|++++|.+++.
T Consensus 131 n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKV 207 (330)
T ss_dssp SCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEE
T ss_pred CcccccCHhHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCcc
Confidence 7777555556666666 7777777777753 45566777777777777777776544333 26677777777777766
Q ss_pred CcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCC
Q 008024 222 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 295 (580)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 295 (580)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh
Confidence 6666777777777777777777666666667777777777777776 566666667777777777777664333
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.6e-32 Score=269.85 Aligned_cols=291 Identities=22% Similarity=0.285 Sum_probs=186.5
Q ss_pred CCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEec
Q 008024 62 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 141 (580)
Q Consensus 62 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 141 (580)
+++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3455555555554 566543 357888888888888776667888888888888888888777778888888888888
Q ss_pred ccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCC
Q 008024 142 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 221 (580)
Q Consensus 142 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 221 (580)
++|.++ .+|..+. + +|++|++++|++++..+..+.++++|+.|++++|.+... +.
T Consensus 108 s~n~l~-~l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~ 162 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GI 162 (330)
T ss_dssp CSSCCS-BCCSSCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GB
T ss_pred CCCcCC-ccChhhc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------Cc
Confidence 888877 5555433 2 377777777777765555666677777777777665421 12
Q ss_pred CcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcc
Q 008024 222 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 301 (580)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 301 (580)
.+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-- 237 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-- 237 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--
T ss_pred ChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc--
Confidence 3334445555555555555555 2333332 5666666666666655566666666666666666666544333321
Q ss_pred cccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccc
Q 008024 302 LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 381 (580)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 381 (580)
.+++|
T Consensus 238 ---------------------------------------------------------------------------~l~~L 242 (330)
T 1xku_A 238 ---------------------------------------------------------------------------NTPHL 242 (330)
T ss_dssp ---------------------------------------------------------------------------GSTTC
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 23456
Q ss_pred cEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhC------cccCCeEeCCCCeeee--cCccccccCCcC
Q 008024 382 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN------LKMIESLDISYNKLTG--QIPPQLTALNFL 453 (580)
Q Consensus 382 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~~--~~p~~l~~l~~L 453 (580)
+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..+..+..+
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 66777777766 66666777777777777777777555555543 3667777888887753 456677777778
Q ss_pred CeeeCcCCc
Q 008024 454 SIFNVSYNN 462 (580)
Q Consensus 454 ~~L~Ls~N~ 462 (580)
+.+++++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 888887774
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.5e-30 Score=256.49 Aligned_cols=207 Identities=17% Similarity=0.182 Sum_probs=123.3
Q ss_pred CCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEE
Q 008024 60 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 139 (580)
Q Consensus 60 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 139 (580)
++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344445666666665 5555432 356666666666665544456666666666666666665555556666666666
Q ss_pred ecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccC-ccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccC-C
Q 008024 140 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKN-A 217 (580)
Q Consensus 140 ~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n-~ 217 (580)
++++|.+++..+..+..++. |++|++++|++++..+ ..+. .+++|++|++++| .
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~-----------------------~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFS-----------------------HLTKLQILRVGNMDT 161 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCT-----------------------TCTTCCEEEEEESSS
T ss_pred ECCCCcCCcCCHhHhCCCcc-CCEEECCCCCCcccCchhhhc-----------------------cCCCCcEEECCCCcc
Confidence 66666655322223444444 5555555555542222 1333 4445555555555 2
Q ss_pred CCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccC
Q 008024 218 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 294 (580)
Q Consensus 218 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (580)
+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 44444556667777778888888877777777888888888888888876333333445788888888888876543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=253.53 Aligned_cols=271 Identities=25% Similarity=0.261 Sum_probs=202.8
Q ss_pred CCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc-------cCCCCcEEEcccccccCccchHHhcCCCCCcEE
Q 008024 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG-------EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL 91 (580)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L 91 (580)
++.....+.+++.++ .+|..+. ++|++|++++|.+++ .+++|++|++++|.++ .++...+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEE
Confidence 344445666666665 4444433 356666666666553 4566666666666666 4544556778889999
Q ss_pred EcccCcCCCcccccccCCCCCCEEEccCCcCCcccc-ccccCCCcccEEecccCc-CCCCChhHHhhccCCCcEEEeecC
Q 008024 92 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQVLDISNNM-LSGHIPHWMGNFSSELEILSMSKN 169 (580)
Q Consensus 92 ~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~n 169 (580)
++++|.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+..++. |++|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCC
Confidence 999998887666668888899999999998884433 477888899999999884 65444566777776 999999999
Q ss_pred cCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCccccc---CCCCCCEEEcccCcccc-
Q 008024 170 HLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELF---RSCKLVTLNLRDNTFSG- 244 (580)
Q Consensus 170 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~- 244 (580)
++++..|..+..+++|++|++++|.+.......+ .+++|+.|++++|.+++..+..+. ....++.++++++.+++
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 9888778888899999999999998865554444 578999999999998876554433 35678899999998875
Q ss_pred ---cCCccccCCCCccEEEcCCCcCCCCChhh-hcCCCCCCEEECcCCcccccCC
Q 008024 245 ---RIPHQINEHSNLRFLLLGGNHLQGPIPDQ-LCQLQKLAMMDLSRNKFSGSIP 295 (580)
Q Consensus 245 ---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 295 (580)
.+|.++..+++|++|++++|+++. +|.. +..+++|++|++++|++.+..|
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 367788899999999999999994 5554 6899999999999999987655
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.4e-29 Score=243.79 Aligned_cols=250 Identities=21% Similarity=0.273 Sum_probs=193.9
Q ss_pred cEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCcc---ccCcCCCCccEEEc
Q 008024 137 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI---ASSLNLSSVEHLSL 213 (580)
Q Consensus 137 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~---~~~~~l~~L~~L~L 213 (580)
+.++.+++.++ .+|..+ +.++++|++++|+++...+..+.++++|++|++++|.++... .....+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45666666666 555533 234888888888887554555778888888888888876432 23336788888888
Q ss_pred ccCCCCCCCcccccCCCCCCEEEcccCcccccCC-ccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccc
Q 008024 214 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 292 (580)
Q Consensus 214 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (580)
++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 888887 456668888889999999998886544 577888899999999998887788888888999999999998875
Q ss_pred -cCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccce
Q 008024 293 -SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 371 (580)
Q Consensus 293 -~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 371 (580)
.+|..+
T Consensus 165 ~~~~~~~------------------------------------------------------------------------- 171 (306)
T 2z66_A 165 NFLPDIF------------------------------------------------------------------------- 171 (306)
T ss_dssp GEECSCC-------------------------------------------------------------------------
T ss_pred ccchhHH-------------------------------------------------------------------------
Confidence 334332
Q ss_pred eecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCC
Q 008024 372 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 451 (580)
Q Consensus 372 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 451 (580)
..+++|+.|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|||++|++++..|..+..++
T Consensus 172 ----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 172 ----TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp ----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred ----hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 2346788899999999887788888899999999999999877777888899999999999999988888888884
Q ss_pred -cCCeeeCcCCcccccCC
Q 008024 452 -FLSIFNVSYNNLSGRTP 468 (580)
Q Consensus 452 -~L~~L~Ls~N~l~~~~p 468 (580)
+|++|++++|++++..+
T Consensus 248 ~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTCCEEECTTCCEECSGG
T ss_pred ccCCEEEccCCCeecccC
Confidence 89999999998876543
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1e-30 Score=282.45 Aligned_cols=410 Identities=14% Similarity=0.066 Sum_probs=287.1
Q ss_pred chhhccCCCCCcCEEEccCCCC---CCCCCcccC------------CCCCCCEEEcccCCCcc-------c-CCC-CcEE
Q 008024 11 PLITCLKNLTRLKILDISSNQL---NGSLPSVIS------------NLTSLEYLDLSHNNFEG-------E-MKE-LSLL 66 (580)
Q Consensus 11 ~~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~~~------------~l~~L~~L~L~~n~l~~-------~-l~~-L~~L 66 (580)
.++..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+++ . +++ |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3456677899999999988642 123333333 78999999999998875 2 445 9999
Q ss_pred Eccccc-ccCccchHHhcCCCCCcEEEcccCcCCCc----ccccccCCCCCCEEEccCCcCC----ccccccccCCCccc
Q 008024 67 DLSRNY-FSGGLSQSVVTGCFSLELLDLSNNNFEGQ----FFSEYMNLTRLRHLYFENNNFS----GKIKDGLLSSTSLQ 137 (580)
Q Consensus 67 ~Ls~n~-~~~~~~~~~~~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~ 137 (580)
++++|. ++......+..++++|++|++++|.+++. ++..+.++++|++|++++|.++ +.++..+..+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 999987 33222233445789999999999988655 3344567899999999999987 34455667899999
Q ss_pred EEecccCcCCCCChhHHhhccCCCcEEEeecCcCC---CccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcc
Q 008024 138 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE---GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQ 214 (580)
Q Consensus 138 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~ 214 (580)
+|++++|.+. .+|..+..++. |+.|+++..... +..+..+..+++|+.++++++...........+++|++|+++
T Consensus 224 ~L~L~~~~~~-~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEIL-ELVGFFKAAAN-LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGG-GGHHHHHHCTT-CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHH-HHHHHHhhhhH-HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecC
Confidence 9999999998 58888888887 999999864332 234456778899999999986544333333378999999999
Q ss_pred cCCCCCCCc-ccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCC-----------CcCCCCC-hhhhcCCCCCC
Q 008024 215 KNALNGLIP-GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG-----------NHLQGPI-PDQLCQLQKLA 281 (580)
Q Consensus 215 ~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~-~~~~~~l~~L~ 281 (580)
+|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ |.+++.. +.....+++|+
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 999765433 3357889999999994433333444456789999999993 5555332 23345689999
Q ss_pred EEECcCCcccccCChhhhc-ccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccch
Q 008024 282 MMDLSRNKFSGSIPPCFAN-VLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERV 360 (580)
Q Consensus 282 ~L~Ls~N~l~~~~p~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (580)
+|+++.|.+++..+..++. ++.++........ ..+.....+.. ..+..
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~------------------~~n~l~~~p~~--~~~~~----------- 430 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLD------------------REERITDLPLD--NGVRS----------- 430 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS------------------CCSCCSSCCCH--HHHHH-----------
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecC------------------CCccccCchHH--HHHHH-----------
Confidence 9999999998766666554 3333221100000 00000000000 00000
Q ss_pred hheeeccccceeecccccccccEEEccCCc--CcccCChhhhc-cccCCeeeCcCCccccc-cchhhhCcccCCeEeCCC
Q 008024 361 EIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ--LTGEIPSDIGQ-LQAILALNLSNNSLSGS-IPESFSNLKMIESLDISY 436 (580)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~ 436 (580)
....+++|+.|++++|. +++..+..++. +++|+.|+|++|++++. ++..+..+++|++|+|++
T Consensus 431 -------------~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 431 -------------LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp -------------HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred -------------HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 01347889999998643 77666666654 89999999999999863 455668899999999999
Q ss_pred Ceeeec-CccccccCCcCCeeeCcCCccccc
Q 008024 437 NKLTGQ-IPPQLTALNFLSIFNVSYNNLSGR 466 (580)
Q Consensus 437 N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ 466 (580)
|++++. ++.....+++|++|++++|++++.
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 998755 444556789999999999998654
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.9e-29 Score=243.63 Aligned_cols=197 Identities=22% Similarity=0.227 Sum_probs=112.0
Q ss_pred EEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCC--CChhHHhhccCCCcEEEee
Q 008024 90 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG--HIPHWMGNFSSELEILSMS 167 (580)
Q Consensus 90 ~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~l~ 167 (580)
.++.+++.++. +|..+ .++|++|++++|+++...+..+.++++|++|++++|.++. ..+..+..++. |++|+++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-LKYLDLS 86 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC-CCEEECC
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccc-cCEEECC
Confidence 44555555442 23322 2455555555555553333334555566666666655541 12444445544 6666666
Q ss_pred cCcCCCccCccCCCCCCCCEEEccCCCCCCccc--cCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccc-
Q 008024 168 KNHLEGNVPVQLNNLERLRILDISENRLSGPIA--SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG- 244 (580)
Q Consensus 168 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~- 244 (580)
+|.++ .+|..+..+++|++|++++|.+++... ....+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 66665 345556666677777777766655443 12255666666666666665555556666666666666666664
Q ss_pred cCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCccc
Q 008024 245 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 245 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 35556666666666666666666555555555666666666666554
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.2e-28 Score=236.52 Aligned_cols=225 Identities=19% Similarity=0.218 Sum_probs=193.6
Q ss_pred cEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEeccc
Q 008024 64 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 143 (580)
Q Consensus 64 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 143 (580)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666665 677644 46899999999999987777889999999999999999877788899999999999999
Q ss_pred Cc-CCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCC
Q 008024 144 NM-LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGL 221 (580)
Q Consensus 144 n~-l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~ 221 (580)
|. +++..|..+..++. |++|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|.+++.
T Consensus 90 n~~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcC-CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 97 77555777888877 9999999999998778889999999999999999988777655 789999999999999877
Q ss_pred CcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCccccc
Q 008024 222 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 293 (580)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (580)
.+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 666788899999999999999988899999999999999999999987778899999999999999998743
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.6e-28 Score=235.10 Aligned_cols=251 Identities=21% Similarity=0.255 Sum_probs=170.3
Q ss_pred cEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEccc
Q 008024 137 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQK 215 (580)
Q Consensus 137 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~ 215 (580)
++++.+++.++ .+|..+ +.+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45556666655 445432 2337777777777765555666777777777777777766544444 567777777777
Q ss_pred CC-CCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccC
Q 008024 216 NA-LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 294 (580)
Q Consensus 216 n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (580)
|. ++...+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 75 66555667777777788888877777666777777778888888888777666666777778888888888776433
Q ss_pred ChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeec
Q 008024 295 PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 374 (580)
Q Consensus 295 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 374 (580)
+..+
T Consensus 170 ~~~~---------------------------------------------------------------------------- 173 (285)
T 1ozn_A 170 ERAF---------------------------------------------------------------------------- 173 (285)
T ss_dssp TTTT----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 3222
Q ss_pred ccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCC
Q 008024 375 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 454 (580)
Q Consensus 375 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~ 454 (580)
..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++.+..+.. .-...++
T Consensus 174 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~ 251 (285)
T 1ozn_A 174 -RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQ 251 (285)
T ss_dssp -TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHH
T ss_pred -cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHH
Confidence 12356777888888887777777777888888888888887666667788888888888888877544321 1223455
Q ss_pred eeeCcCCcccccCCC
Q 008024 455 IFNVSYNNLSGRTPD 469 (580)
Q Consensus 455 ~L~Ls~N~l~~~~p~ 469 (580)
.+..+.+.+.+..|.
T Consensus 252 ~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 252 KFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HCCSEECCCBEEESG
T ss_pred hcccccCccccCCch
Confidence 555667777776665
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.2e-28 Score=239.66 Aligned_cols=223 Identities=20% Similarity=0.265 Sum_probs=167.9
Q ss_pred CcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccC
Q 008024 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 240 (580)
Q Consensus 161 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 240 (580)
++.|++++|.++ .+|..+..+++|++|++++|.++..+.....+++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 666666666665 4555555566666666666666533222335666666666666666 45666666666777777666
Q ss_pred cccccCCcccc---------CCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCc
Q 008024 241 TFSGRIPHQIN---------EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 311 (580)
Q Consensus 241 ~l~~~~~~~~~---------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 311 (580)
.+.+.+|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~------------ 226 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH------------ 226 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG------------
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc------------
Confidence 66666665554 4888999999999888 778888888999999999998874 443332
Q ss_pred ccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcC
Q 008024 312 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 391 (580)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 391 (580)
.+++|+.|++++|.+
T Consensus 227 -----------------------------------------------------------------~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 227 -----------------------------------------------------------------HLPKLEELDLRGCTA 241 (328)
T ss_dssp -----------------------------------------------------------------GCTTCCEEECTTCTT
T ss_pred -----------------------------------------------------------------cCCCCCEEECcCCcc
Confidence 346788899999998
Q ss_pred cccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCccc
Q 008024 392 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 464 (580)
Q Consensus 392 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 464 (580)
.+.+|..++.+++|++|+|++|.+.+.+|..++++++|++|||++|++.+.+|..+..+++|+.++++.|.+.
T Consensus 242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8899999999999999999999988899999999999999999999999999999999999999998877663
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.1e-27 Score=249.38 Aligned_cols=247 Identities=20% Similarity=0.245 Sum_probs=176.2
Q ss_pred ccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcc
Q 008024 136 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ 214 (580)
Q Consensus 136 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~ 214 (580)
...++.++..++ .+|..+ +.+++.|++++|.+++..+..|.++++|+.|++++|.+++..+..+ ++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 345566666665 455432 2347777777777776666777777777777777777776665555 67777777777
Q ss_pred cCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCC-cCCCCChhhhcCCCCCCEEECcCCccccc
Q 008024 215 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN-HLQGPIPDQLCQLQKLAMMDLSRNKFSGS 293 (580)
Q Consensus 215 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (580)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++| .+....+..+..+++|++|++++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 77777666666777777888888888777666667777788888888774 3443334457777888888888887763
Q ss_pred CChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceee
Q 008024 294 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY 373 (580)
Q Consensus 294 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 373 (580)
+|. +
T Consensus 211 ~~~-~--------------------------------------------------------------------------- 214 (452)
T 3zyi_A 211 MPN-L--------------------------------------------------------------------------- 214 (452)
T ss_dssp CCC-C---------------------------------------------------------------------------
T ss_pred ccc-c---------------------------------------------------------------------------
Confidence 221 0
Q ss_pred cccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcC
Q 008024 374 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 453 (580)
Q Consensus 374 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 453 (580)
..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|
T Consensus 215 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 215 --TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp --TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred --cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 234567778888888887777778888888888888888887777778888888888888888887666777778888
Q ss_pred CeeeCcCCcccc
Q 008024 454 SIFNVSYNNLSG 465 (580)
Q Consensus 454 ~~L~Ls~N~l~~ 465 (580)
+.|++++|++..
T Consensus 293 ~~L~L~~Np~~C 304 (452)
T 3zyi_A 293 VELHLHHNPWNC 304 (452)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCcCC
Confidence 888888887754
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.5e-28 Score=239.06 Aligned_cols=226 Identities=17% Similarity=0.195 Sum_probs=181.0
Q ss_pred CCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEE
Q 008024 60 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 139 (580)
Q Consensus 60 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 139 (580)
.+++++|++++|.++ .+|..++ ++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 356667777777766 7777664 4888888888888888 67778888888888888888888 678888888888888
Q ss_pred ecccCcCCCCChhHHhh---------ccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccE
Q 008024 140 DISNNMLSGHIPHWMGN---------FSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEH 210 (580)
Q Consensus 140 ~l~~n~l~~~~p~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~ 210 (580)
++++|.+.+.+|..+.. ++. |++|++++|+++ .+|..+..+++|++|++++|.+++.++....+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTT-CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCC-CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 88888777788876654 665 888888888887 6777788888888888888888876665557888888
Q ss_pred EEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcc
Q 008024 211 LSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 290 (580)
Q Consensus 211 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (580)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888877655
Q ss_pred c
Q 008024 291 S 291 (580)
Q Consensus 291 ~ 291 (580)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=248.53 Aligned_cols=247 Identities=21% Similarity=0.272 Sum_probs=176.1
Q ss_pred ccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcc
Q 008024 136 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ 214 (580)
Q Consensus 136 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~ 214 (580)
.+.++.++..++ .+|..+. .+++.|++++|++++..+..|.++++|++|++++|.+++..+..+ ++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345566666665 5555332 337777777777776666777777777777777777776655544 67777777777
Q ss_pred cCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCc-CCCCChhhhcCCCCCCEEECcCCccccc
Q 008024 215 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH-LQGPIPDQLCQLQKLAMMDLSRNKFSGS 293 (580)
Q Consensus 215 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (580)
+|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|. +....+..|..+++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 777776666667777778888888887776666677777888888887743 43333446777788888888888776 2
Q ss_pred CChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceee
Q 008024 294 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY 373 (580)
Q Consensus 294 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 373 (580)
+|. +
T Consensus 200 ~~~-~--------------------------------------------------------------------------- 203 (440)
T 3zyj_A 200 IPN-L--------------------------------------------------------------------------- 203 (440)
T ss_dssp CCC-C---------------------------------------------------------------------------
T ss_pred ccc-c---------------------------------------------------------------------------
Confidence 221 0
Q ss_pred cccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcC
Q 008024 374 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 453 (580)
Q Consensus 374 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 453 (580)
..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|.++++|+.|||++|++++..+..+..+++|
T Consensus 204 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 204 --TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp --TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred --CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 234567778888888887777778888888888888888887777778888888888888888887666777778888
Q ss_pred CeeeCcCCcccc
Q 008024 454 SIFNVSYNNLSG 465 (580)
Q Consensus 454 ~~L~Ls~N~l~~ 465 (580)
+.|++++|++..
T Consensus 282 ~~L~L~~Np~~C 293 (440)
T 3zyj_A 282 ERIHLHHNPWNC 293 (440)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEcCCCCccC
Confidence 888888887754
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-29 Score=250.73 Aligned_cols=267 Identities=19% Similarity=0.216 Sum_probs=198.7
Q ss_pred CCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEcc
Q 008024 112 LRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 191 (580)
Q Consensus 112 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 191 (580)
++..+++.+.+.......+..+++|++|++++|.+++..|..+..++. |++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 334445555554344444455566777777777776555566666665 7777777777764443 6677777777777
Q ss_pred CCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCCh
Q 008024 192 ENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 271 (580)
Q Consensus 192 ~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 271 (580)
+|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCcccccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 77766433 2367888888888887654433 5678889999998887777788888899999999999887666
Q ss_pred hhh-cCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhh
Q 008024 272 DQL-CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSAL 350 (580)
Q Consensus 272 ~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 350 (580)
..+ ..+++|++|++++|.+++. |..
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~~----------------------------------------------------- 187 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KGQ----------------------------------------------------- 187 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-ECC-----------------------------------------------------
T ss_pred HHHhhccCcCCEEECCCCcCccc-ccc-----------------------------------------------------
Confidence 666 4688999999999988743 110
Q ss_pred hhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCC
Q 008024 351 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 430 (580)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 430 (580)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+
T Consensus 188 -------------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 188 -------------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp -------------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred -------------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 124678899999999984 5666899999999999999998 6788899999999
Q ss_pred eEeCCCCeee-ecCccccccCCcCCeeeCc-CCcccccCCC
Q 008024 431 SLDISYNKLT-GQIPPQLTALNFLSIFNVS-YNNLSGRTPD 469 (580)
Q Consensus 431 ~LdLs~N~l~-~~~p~~l~~l~~L~~L~Ls-~N~l~~~~p~ 469 (580)
.|++++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999999998 7788889999999999998 5566665554
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.6e-30 Score=277.25 Aligned_cols=391 Identities=13% Similarity=0.070 Sum_probs=271.2
Q ss_pred CCCCCcCEEEccCCCCCCCCCcccCC-CCC-CCEEEcccCC-Ccc--------cCCCCcEEEcccccccCccc---hHHh
Q 008024 17 KNLTRLKILDISSNQLNGSLPSVISN-LTS-LEYLDLSHNN-FEG--------EMKELSLLDLSRNYFSGGLS---QSVV 82 (580)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~-L~~L~L~~n~-l~~--------~l~~L~~L~Ls~n~~~~~~~---~~~~ 82 (580)
.++++|++|+|++|.+++..+..+.. +++ |++|+|++|. ++. .+++|++|+|++|.+++... ..+.
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 37899999999999988766666665 344 9999999886 321 68999999999999875532 2245
Q ss_pred cCCCCCcEEEcccCcCC----CcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCC---CCChhHHh
Q 008024 83 TGCFSLELLDLSNNNFE----GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS---GHIPHWMG 155 (580)
Q Consensus 83 ~~l~~L~~L~ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~p~~~~ 155 (580)
.++++|++|++++|.++ ..++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 67899999999999987 3344556788999999999999884 6788899999999999864322 12333445
Q ss_pred hccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccC--cCCCCccEEEcccCCCCC-CCcccccCCCCC
Q 008024 156 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS--LNLSSVEHLSLQKNALNG-LIPGELFRSCKL 232 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~--~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L 232 (580)
.++. |+.|+++++... .+|..+..+++|++|++++|.+++..... ..+++|++|+++ +.+.+ .++.....+++|
T Consensus 268 ~~~~-L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 268 FPRK-LCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCTT-CCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred cccc-ccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 5555 899988886443 67777788889999999998866443321 378899999998 33332 233334567889
Q ss_pred CEEEccc-----------Cccccc-CCccccCCCCccEEEcCCCcCCCCChhhhcC-CCCCCEEECc----CCccccc--
Q 008024 233 VTLNLRD-----------NTFSGR-IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ-LQKLAMMDLS----RNKFSGS-- 293 (580)
Q Consensus 233 ~~L~L~~-----------n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~-- 293 (580)
++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 9999983 566543 2222445888999999888888766666665 8889999996 6667653
Q ss_pred ---CChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccc
Q 008024 294 ---IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRY 370 (580)
Q Consensus 294 ---~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 370 (580)
++..+..++.++......-.+ .+.....
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~-----------------------~l~~~~~-------------------------- 455 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQG-----------------------GLTDLGL-------------------------- 455 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGG-----------------------GCCHHHH--------------------------
T ss_pred HHHHHHHHHhCCCCCEEEEecCCC-----------------------CccHHHH--------------------------
Confidence 222233333332211000000 0000000
Q ss_pred eeecccccccccEEEccCCcCcc-cCChhhhccccCCeeeCcCCccccc-cchhhhCcccCCeEeCCCCeeeecCcccc-
Q 008024 371 EIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGS-IPESFSNLKMIESLDISYNKLTGQIPPQL- 447 (580)
Q Consensus 371 ~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p~~l- 447 (580)
......+++|+.|++++|++++ .++..+..+++|+.|+|++|.+++. ++..+..+++|++|+|++|++++.....+
T Consensus 456 -~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 456 -SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp -HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred -HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 0001236789999999999986 3455568899999999999999765 44556789999999999999986544444
Q ss_pred ccCCcCCeeeCcCC
Q 008024 448 TALNFLSIFNVSYN 461 (580)
Q Consensus 448 ~~l~~L~~L~Ls~N 461 (580)
..++.+....+..+
T Consensus 535 ~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 535 MARPYWNIELIPSR 548 (592)
T ss_dssp GCCTTEEEEEECCC
T ss_pred HhCCCcEEEEecCc
Confidence 35666666655554
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.4e-27 Score=244.10 Aligned_cols=229 Identities=19% Similarity=0.177 Sum_probs=195.8
Q ss_pred CCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEe
Q 008024 61 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD 140 (580)
Q Consensus 61 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 140 (580)
+++++|+|++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++|+|++|+++...+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 34555555555555 45555568899999999999999988888999999999999999999977777788999999999
Q ss_pred cccCcCCCCChhHHhhccCCCcEEEeecC-cCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCC
Q 008024 141 ISNNMLSGHIPHWMGNFSSELEILSMSKN-HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 219 (580)
Q Consensus 141 l~~n~l~~~~p~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 219 (580)
+++|.+++..+..+..++. |+.|++++| .+....+..+..+++|++|++++|.+++. +....+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPS-LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCc-ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCc
Confidence 9999998544556777777 999999984 55544445688999999999999999865 45558999999999999999
Q ss_pred CCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccc
Q 008024 220 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 292 (580)
Q Consensus 220 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (580)
+..|..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9889999999999999999999999889999999999999999999998788888999999999999999864
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=5.5e-27 Score=250.32 Aligned_cols=193 Identities=25% Similarity=0.298 Sum_probs=88.9
Q ss_pred CcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecc
Q 008024 63 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 142 (580)
Q Consensus 63 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 142 (580)
+++|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 444444444444 4554332 455566666655552 222 3455555555555555 2333 34555555555
Q ss_pred cCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCC
Q 008024 143 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 222 (580)
Q Consensus 143 ~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~ 222 (580)
+|.++ .+|. .++ +|+.|++++|++++ +|.. +++|++|++++|.+++... .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~-~l~~---~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLT-HLPA---LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCC-CCCC---CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCC-CCCC---CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-C
Confidence 55555 2333 122 25555555555552 3322 2455555555555543221 23445555555555543 2
Q ss_pred cccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCccc
Q 008024 223 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|. .+++|+.|++++|.++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT 234 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC
Confidence 2 223445555555555542 2221 234455555555444 2222 1244444555544443
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.9e-27 Score=242.43 Aligned_cols=228 Identities=20% Similarity=0.205 Sum_probs=191.4
Q ss_pred CCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEec
Q 008024 62 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 141 (580)
Q Consensus 62 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 141 (580)
++++|+|++|.++ .++...|.++++|++|++++|.++...+..|.++++|++|+|++|+++...+..+..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 3444444444444 555556688899999999999998887888889999999999999998666677888999999999
Q ss_pred ccCcCCCCChhHHhhccCCCcEEEeecC-cCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCC
Q 008024 142 SNNMLSGHIPHWMGNFSSELEILSMSKN-HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG 220 (580)
Q Consensus 142 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~ 220 (580)
++|.+++..+..+..++. |++|++++| .+....+..|.++++|++|++++|.++.. +....+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPS-LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcc-cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cccCCCcccCEEECCCCccCc
Confidence 999988555556777777 999999984 45544445788999999999999999854 445588999999999999998
Q ss_pred CCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccc
Q 008024 221 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 292 (580)
Q Consensus 221 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (580)
..|..+..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 889999999999999999999999889999999999999999999998888888999999999999999863
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.7e-26 Score=246.51 Aligned_cols=263 Identities=25% Similarity=0.299 Sum_probs=218.0
Q ss_pred CCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEE
Q 008024 86 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILS 165 (580)
Q Consensus 86 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ 165 (580)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .++. |++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~-L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPG-LLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTT-CCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCC-CCEEE
Confidence 46999999999998 5666664 89999999999998 5555 5789999999999998 5776 4455 99999
Q ss_pred eecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccccc
Q 008024 166 MSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 245 (580)
Q Consensus 166 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (580)
+++|.+++ +|. .+++|+.|++++|++++.+. .+++|++|++++|.+++. |. ..++|+.|++++|++++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-
Confidence 99999985 444 56899999999999987544 358999999999999854 43 34689999999999985
Q ss_pred CCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccch
Q 008024 246 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEE 325 (580)
Q Consensus 246 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 325 (580)
+| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. +|.
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~----------------------------- 218 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA----------------------------- 218 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC-----------------------------
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC-----------------------------
Confidence 55 457899999999999985 444 24789999999998872 221
Q ss_pred hccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccC
Q 008024 326 IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAI 405 (580)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 405 (580)
.+++|+.|+|++|.+++ +| ..+++|
T Consensus 219 ---------------------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L 243 (622)
T 3g06_A 219 ---------------------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSEL 243 (622)
T ss_dssp ---------------------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred ---------------------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcC
Confidence 12578889999999985 66 456899
Q ss_pred CeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCC
Q 008024 406 LALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 406 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 469 (580)
+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 99999999999 5666 6789999999999999 7899999999999999999999988775
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=6.7e-29 Score=245.79 Aligned_cols=255 Identities=20% Similarity=0.218 Sum_probs=167.7
Q ss_pred CCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHH
Q 008024 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSV 81 (580)
Q Consensus 2 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~ 81 (580)
+++.+.+.......+..+++|++|+|++|++++..|..|.++++|++|+|++|.+++ .+.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------~~~-- 75 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------------TLD-- 75 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------------------EEE--
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------------------chh--
Confidence 455666666666667777788888888888887777788888888888888887762 222
Q ss_pred hcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCC
Q 008024 82 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 161 (580)
Q Consensus 82 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L 161 (580)
+..+++|++|++++|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..++. |
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~-L 146 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSR-V 146 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSS-E
T ss_pred hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCC-C
Confidence 345666666666666655322 2356666666666666443322 455666666666666444445555555 6
Q ss_pred cEEEeecCcCCCccCccC-CCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccC
Q 008024 162 EILSMSKNHLEGNVPVQL-NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 240 (580)
Q Consensus 162 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 240 (580)
++|++++|.+++..+..+ ..+++|++|++++|.+++.. ....+++|++|++++|.+++. |..+..+++|+.|++++|
T Consensus 147 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTS
T ss_pred CEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCC
Confidence 666666666665555544 35667777777777766542 222467777777777777744 344677777888888888
Q ss_pred cccccCCccccCCCCccEEEcCCCcCC-CCChhhhcCCCCCCEEECcCC
Q 008024 241 TFSGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRN 288 (580)
Q Consensus 241 ~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N 288 (580)
+++ .+|..+..+++|+.|++++|.+. +..|.++..+++|+.++++++
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 777 45666777778888888888776 566677777777777777633
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1e-28 Score=243.97 Aligned_cols=251 Identities=19% Similarity=0.214 Sum_probs=148.0
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCC-CCChhHHh-------hccCCCcEEEeecCcCCCccCcc
Q 008024 107 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMG-------NFSSELEILSMSKNHLEGNVPVQ 178 (580)
Q Consensus 107 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~-------~~~~~L~~L~l~~n~l~~~~~~~ 178 (580)
+..++|++|++++|.+ .+|..+... |+.|++++|.++ ..+|..+. .++. |++|++++|++++.+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhHHH
Confidence 3445566666666666 344444332 566666666552 23444333 3443 555666655555555554
Q ss_pred C--CCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCC-----CCCCEEEcccCcccccCCcccc
Q 008024 179 L--NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRS-----CKLVTLNLRDNTFSGRIPHQIN 251 (580)
Q Consensus 179 ~--~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~ 251 (580)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR------------------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS------------------------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred HHHhcCCCccEEEccCCCCcch------------------------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 3 4555555555555554443 3333333 5666666666666655555666
Q ss_pred CCCCccEEEcCCCcCCCC--Chhhh--cCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhc
Q 008024 252 EHSNLRFLLLGGNHLQGP--IPDQL--CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE 327 (580)
Q Consensus 252 ~~~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (580)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|++++. +.....+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~-------------------------- 223 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGVCSAL-------------------------- 223 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHHHHHH--------------------------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHHHHHH--------------------------
Confidence 666666666666665433 23333 5667777777777766521 1100000
Q ss_pred cCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCC-hhhhccccCC
Q 008024 328 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAIL 406 (580)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~ 406 (580)
...+++|+.|++++|++++..| ..+..+++|+
T Consensus 224 -----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 224 -----------------------------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp -----------------------------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred -----------------------------------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 0124567777777777776554 3455677888
Q ss_pred eeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccc
Q 008024 407 ALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 465 (580)
Q Consensus 407 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 465 (580)
+|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8888888887 6776665 7888888888888854 55 7788888888888888864
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1e-28 Score=243.93 Aligned_cols=223 Identities=21% Similarity=0.247 Sum_probs=163.4
Q ss_pred CcEEEccccccc-CccchHHh------cCCCCCcEEEcccCcCCCcccccc--cCCCCCCEEEccCCcCCccccccccCC
Q 008024 63 LSLLDLSRNYFS-GGLSQSVV------TGCFSLELLDLSNNNFEGQFFSEY--MNLTRLRHLYFENNNFSGKIKDGLLSS 133 (580)
Q Consensus 63 L~~L~Ls~n~~~-~~~~~~~~------~~l~~L~~L~ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l 133 (580)
|++|++++|.+. ..+|.... .++++|++|++++|.+++..|..+ ..+++|++|++++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 445555555552 24454432 257788888888888877777765 7788888888888888765 6666665
Q ss_pred -----CcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCc--cCccC--CCCCCCCEEEccCCCCCCccc---c
Q 008024 134 -----TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN--VPVQL--NNLERLRILDISENRLSGPIA---S 201 (580)
Q Consensus 134 -----~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~ls~n~l~~~~~---~ 201 (580)
++|++|++++|.+++..|..++.++. |++|++++|++.+. .+..+ ..+++|++|++++|.+++... .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSS-CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCC-CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 78888888888887666677777776 88888888887654 23333 778888888888888874321 2
Q ss_pred Cc-CCCCccEEEcccCCCCCCCc-ccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCC
Q 008024 202 SL-NLSSVEHLSLQKNALNGLIP-GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 279 (580)
Q Consensus 202 ~~-~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 279 (580)
.+ .+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 22 67888888888888887664 44556788999999999988 6777665 7899999999999865 55 888899
Q ss_pred CCEEECcCCcccc
Q 008024 280 LAMMDLSRNKFSG 292 (580)
Q Consensus 280 L~~L~Ls~N~l~~ 292 (580)
|++|++++|++++
T Consensus 298 L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 298 VGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECTTCTTTC
T ss_pred CCEEeccCCCCCC
Confidence 9999999998875
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.2e-27 Score=248.46 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=142.4
Q ss_pred cccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcc
Q 008024 135 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQ 214 (580)
Q Consensus 135 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~ 214 (580)
+|++|++++|.+++..|..+..++. |++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 5666666666666544555555555 6666666666654433 5666666666666666554332 2566666666
Q ss_pred cCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhc-CCCCCCEEECcCCccccc
Q 008024 215 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLSRNKFSGS 293 (580)
Q Consensus 215 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~ 293 (580)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6666654432 235666677777766666666666666777777777776665665554 566777777777766532
Q ss_pred CChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceee
Q 008024 294 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY 373 (580)
Q Consensus 294 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 373 (580)
.+.
T Consensus 185 ~~~----------------------------------------------------------------------------- 187 (487)
T 3oja_A 185 KGQ----------------------------------------------------------------------------- 187 (487)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred cccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeee-ecCccccccCCc
Q 008024 374 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT-GQIPPQLTALNF 452 (580)
Q Consensus 374 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~ 452 (580)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|++++|.++ +.+|..+..++.
T Consensus 188 --~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 188 --VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp --CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred --ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 123556667777777764 3444666677777777777776 35656666677777777777666 455566666666
Q ss_pred CCeeeCc
Q 008024 453 LSIFNVS 459 (580)
Q Consensus 453 L~~L~Ls 459 (580)
|+.++++
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 6666554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.4e-27 Score=246.15 Aligned_cols=237 Identities=22% Similarity=0.249 Sum_probs=151.9
Q ss_pred CCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCc
Q 008024 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 97 (580)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 97 (580)
.+++|++|+|++|.+++..|..|..+++|++|+|++|.+++ ..| +..+++|++|++++|.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~~---l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----------------TLD---LESLSTLRTLDLNNNY 91 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-----------------EEE---CTTCTTCCEEECCSSE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-----------------Ccc---cccCCCCCEEEecCCc
Confidence 34489999999999998878889999999999988888763 112 3455666666666666
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCc
Q 008024 98 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 177 (580)
Q Consensus 98 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~ 177 (580)
+++..+ .++|++|++++|.+++..+. .+++|+.|++++|.+++..|..++.++. |+.|++++|.+++..|.
T Consensus 92 l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 92 VQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp EEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGG
T ss_pred CCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChH
Confidence 553221 25666666666666544332 2455666666666666555555555555 66666666666655555
Q ss_pred cCC-CCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCc
Q 008024 178 QLN-NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 256 (580)
Q Consensus 178 ~~~-~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 256 (580)
.+. .+++|+.|++++|.+++..+ ...+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L 239 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred HHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCC
Confidence 554 56666666666666665422 2246667777777777765433 46666777777777777763 56666667777
Q ss_pred cEEEcCCCcCC-CCChhhhcCCCCCCEEECc
Q 008024 257 RFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLS 286 (580)
Q Consensus 257 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 286 (580)
+.|++++|.+. +..|..+..++.|+.++++
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77777777766 4455666666666666554
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6e-28 Score=260.82 Aligned_cols=404 Identities=16% Similarity=0.106 Sum_probs=259.0
Q ss_pred hhccCCCCCcCEEEccCCCCCC---CCC------------cccCCCCCCCEEEcccCCCcc--------cCCCCcEEEcc
Q 008024 13 ITCLKNLTRLKILDISSNQLNG---SLP------------SVISNLTSLEYLDLSHNNFEG--------EMKELSLLDLS 69 (580)
Q Consensus 13 ~~~~~~l~~L~~L~Ls~n~i~~---~~~------------~~~~~l~~L~~L~L~~n~l~~--------~l~~L~~L~Ls 69 (580)
...+.++++|++|+++++.... ..| .....+++|++|+|++|.+++ .+++|++|+++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 3456778999999999875221 112 113468899999999998875 57999999999
Q ss_pred cc-cccCccchHHhcCCCCCcEEEcccCcCCCcccccc----cCCCCCCEEEccCCc--CCc-cccccccCCCcccEEec
Q 008024 70 RN-YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEY----MNLTRLRHLYFENNN--FSG-KIKDGLLSSTSLQVLDI 141 (580)
Q Consensus 70 ~n-~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~----~~l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~l 141 (580)
+| .++......++.++++|++|++++|.+++..+..+ ..+++|++|++++|. +.. .++..+..+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 99 55533344555679999999999998776554444 367799999999986 321 12233355799999999
Q ss_pred ccC-cCCCCChhHHhhccCCCcEEEeecCc-------CCCccCccCCCCCCCCEE-EccCCCCCCccccCc-CCCCccEE
Q 008024 142 SNN-MLSGHIPHWMGNFSSELEILSMSKNH-------LEGNVPVQLNNLERLRIL-DISENRLSGPIASSL-NLSSVEHL 211 (580)
Q Consensus 142 ~~n-~l~~~~p~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L-~ls~n~l~~~~~~~~-~l~~L~~L 211 (580)
++| .+. .++..+..++. |+.|+++.+. +.+ ++..+.++++|+.+ .+.+.... ..+... .+++|++|
T Consensus 219 ~~~~~~~-~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 219 NRAVPLE-KLATLLQRAPQ-LEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTL 294 (594)
T ss_dssp CTTSCHH-HHHHHHHHCTT-CSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEE
T ss_pred CCCCcHH-HHHHHHhcCCc-ceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEE
Confidence 998 444 47777888877 9999976553 222 33456778888888 34332211 122222 57888999
Q ss_pred EcccCCCCCCCcc-cccCCCCCCEEEcccCccccc-CCccccCCCCccEEEcCC---------CcCCCCChhhhc-CCCC
Q 008024 212 SLQKNALNGLIPG-ELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGG---------NHLQGPIPDQLC-QLQK 279 (580)
Q Consensus 212 ~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~---------n~l~~~~~~~~~-~l~~ 279 (580)
++++|.+++.... .+..+++|++|++++| +++. ++.....+++|++|++.+ +.+++.....+. .+++
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 9988886643222 2457788999998887 4422 222333578888888833 344433233333 4788
Q ss_pred CCEEECcCCcccccCChhhh-cccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhcccc
Q 008024 280 LAMMDLSRNKFSGSIPPCFA-NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDE 358 (580)
Q Consensus 280 L~~L~Ls~N~l~~~~p~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (580)
|+.|+++.|.+++..+..+. .++.++............ .. ....+.. ..+..
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~--------------~~--l~~~~~~--~~~~~--------- 426 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP--------------DY--LTLEPLD--IGFGA--------- 426 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC--------------CT--TTCCCTH--HHHHH---------
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc--------------cc--ccCCchh--hHHHH---------
Confidence 88888888888765544443 233222211000000000 00 0000000 00000
Q ss_pred chhheeeccccceeecccccccccEEEccCCcCcccCChhhhc-cccCCeeeCcCCccccccchhh-hCcccCCeEeCCC
Q 008024 359 RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ-LQAILALNLSNNSLSGSIPESF-SNLKMIESLDISY 436 (580)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~LdLs~ 436 (580)
....+++|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|++|+|++
T Consensus 427 ---------------l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 427 ---------------IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp ---------------HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred ---------------HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 013467889999977 676665566655 8889999999999877666655 6789999999999
Q ss_pred CeeeecCcc-ccccCCcCCeeeCcCCccc
Q 008024 437 NKLTGQIPP-QLTALNFLSIFNVSYNNLS 464 (580)
Q Consensus 437 N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~ 464 (580)
|++++..+. ....+++|+.|++++|+++
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 998755444 3445888999999999874
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=9.7e-29 Score=267.02 Aligned_cols=394 Identities=12% Similarity=0.060 Sum_probs=251.3
Q ss_pred ccCCCCCcCEEEccCCCCCCCCCcccC-CCCCCCEEEcccC-CCcc--------cCCCCcEEEcccccccCccchH---H
Q 008024 15 CLKNLTRLKILDISSNQLNGSLPSVIS-NLTSLEYLDLSHN-NFEG--------EMKELSLLDLSRNYFSGGLSQS---V 81 (580)
Q Consensus 15 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n-~l~~--------~l~~L~~L~Ls~n~~~~~~~~~---~ 81 (580)
....+++|++|+|++|.+++..+..+. .+++|++|+|++| .+++ .+++|++|++++|.+++..+.. +
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 345789999999999998877776675 6899999999998 5543 7899999999999987544332 2
Q ss_pred hcCCCCCcEEEcccCc--CCCc-ccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCc-------CCCCCh
Q 008024 82 VTGCFSLELLDLSNNN--FEGQ-FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM-------LSGHIP 151 (580)
Q Consensus 82 ~~~l~~L~~L~ls~n~--i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~p 151 (580)
...+++|++|++++|. +... +...+.++++|++|++++|...+.++..+..+++|++|+++.+. +. .++
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~ 258 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLS 258 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHH
Confidence 3467899999999986 3311 12223457999999999983323477788889999999976553 22 234
Q ss_pred hHHhhccCCCcEE-EeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccC--cCCCCccEEEcccCCCCCC-Cccccc
Q 008024 152 HWMGNFSSELEIL-SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS--LNLSSVEHLSLQKNALNGL-IPGELF 227 (580)
Q Consensus 152 ~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~--~~l~~L~~L~L~~n~l~~~-~~~~~~ 227 (580)
..+..++. |+.| .+.+... +.++..+..+++|+.|++++|.+++..... ..+++|++|++++| ++.. ++....
T Consensus 259 ~~l~~~~~-L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 259 VALSGCKE-LRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHHTCTT-CCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHHhcCCC-cccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 45666665 7777 3333222 234444445678888888887755432221 16778888888777 3322 112223
Q ss_pred CCCCCCEEEccc---------CcccccCCccc-cCCCCccEEEcCCCcCCCCChhhhc-CCCCCCEEECc--C----Ccc
Q 008024 228 RSCKLVTLNLRD---------NTFSGRIPHQI-NEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLS--R----NKF 290 (580)
Q Consensus 228 ~~~~L~~L~L~~---------n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l 290 (580)
.+++|++|++.+ +.+++.....+ ..+++|+.|.+..|.+++..+..+. .+++|+.|+++ + +.+
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 467788887733 34443322222 2367788887777777655555554 47788888887 3 444
Q ss_pred cccC-----ChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheee
Q 008024 291 SGSI-----PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 365 (580)
Q Consensus 291 ~~~~-----p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 365 (580)
++.. +..+..++.++..... + .+.......
T Consensus 416 ~~~~~~~~~~~l~~~~~~L~~L~L~---~-----------------------~l~~~~~~~------------------- 450 (594)
T 2p1m_B 416 TLEPLDIGFGAIVEHCKDLRRLSLS---G-----------------------LLTDKVFEY------------------- 450 (594)
T ss_dssp TCCCTHHHHHHHHHHCTTCCEEECC---S-----------------------SCCHHHHHH-------------------
T ss_pred cCCchhhHHHHHHhhCCCccEEeec---C-----------------------cccHHHHHH-------------------
Confidence 4211 1112222222211000 0 000000000
Q ss_pred ccccceeecccccccccEEEccCCcCcccCChhh-hccccCCeeeCcCCccccccch-hhhCcccCCeEeCCCCeeeecC
Q 008024 366 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKLTGQI 443 (580)
Q Consensus 366 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~~ 443 (580)
....+++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+++...
T Consensus 451 --------l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 451 --------IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp --------HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred --------HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 00135789999999999987665555 6799999999999999765554 4456899999999999997554
Q ss_pred cccc-ccCCcCCeeeCcCCcccc
Q 008024 444 PPQL-TALNFLSIFNVSYNNLSG 465 (580)
Q Consensus 444 p~~l-~~l~~L~~L~Ls~N~l~~ 465 (580)
...+ ..++.|+...+..+.-..
T Consensus 523 ~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 523 CKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp HHHHHHHCTTEEEEEECSSSCGG
T ss_pred HHHHHHhCCCCEEEEecCCCccc
Confidence 4455 557777776666665443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.5e-25 Score=211.98 Aligned_cols=208 Identities=21% Similarity=0.239 Sum_probs=110.5
Q ss_pred CCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcC
Q 008024 184 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 262 (580)
Q Consensus 184 ~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 262 (580)
+|++|++++|.+++..+..+ ++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444443333222 34444444444444443333444455555555555555554444555555555555555
Q ss_pred CCcCCCCChhhhcCCCCCCEEECcCCccccc-CChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCcccc
Q 008024 263 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 341 (580)
Q Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (580)
+|.+++..+..+..+++|++|++++|.+++. +|..+.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~------------------------------------------ 146 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS------------------------------------------ 146 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG------------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhc------------------------------------------
Confidence 5555544443455555555555555555431 233221
Q ss_pred chhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCC----eeeCcCCcccc
Q 008024 342 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL----ALNLSNNSLSG 417 (580)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~ 417 (580)
.+++|+.|++++|++++..+..+..+++|+ .|++++|++++
T Consensus 147 -----------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 147 -----------------------------------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp -----------------------------------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred -----------------------------------cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 123455556666655554445555555555 66677777764
Q ss_pred ccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCCC
Q 008024 418 SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 418 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 469 (580)
..+..+. ..+|+.|+|++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 192 ~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 192 IQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp ECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 4444333 34677777777777755555566777777777777777665554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.1e-24 Score=211.07 Aligned_cols=170 Identities=19% Similarity=0.303 Sum_probs=85.7
Q ss_pred cchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCC-ChhHHh
Q 008024 77 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH-IPHWMG 155 (580)
Q Consensus 77 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~ 155 (580)
++...+.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+.
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence 3333344455555555555555544444555555555555555555544343455555555555555555431 344444
Q ss_pred hccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCcc-EEEcccCCCCCCCcccccCCCCCCE
Q 008024 156 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVE-HLSLQKNALNGLIPGELFRSCKLVT 234 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~ 234 (580)
.++. |++|++++|++++..+..+..+++|+ .+. .|++++|.+++..+..+ ...+|+.
T Consensus 147 ~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~--------------------~l~l~L~ls~n~l~~~~~~~~-~~~~L~~ 204 (276)
T 2z62_A 147 NLTN-LEHLDLSSNKIQSIYCTDLRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAF-KEIRLKE 204 (276)
T ss_dssp GCTT-CCEEECCSSCCCEECGGGGHHHHTCT--------------------TCCEEEECCSSCCCEECTTSS-CSCCEEE
T ss_pred cCCC-CCEEECCCCCCCcCCHHHhhhhhhcc--------------------ccceeeecCCCcccccCcccc-CCCcccE
Confidence 4444 55555555544433333333333333 222 45555555553333222 2335666
Q ss_pred EEcccCcccccCCccccCCCCccEEEcCCCcCCC
Q 008024 235 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG 268 (580)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 268 (580)
|++++|++++..+..+..+++|++|++++|++.+
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred EECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 6666666665444455666677777777776664
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.4e-24 Score=209.72 Aligned_cols=203 Identities=20% Similarity=0.189 Sum_probs=124.0
Q ss_pred CCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccE
Q 008024 179 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 258 (580)
Q Consensus 179 ~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 258 (580)
+.++++++.++++++.++..+... .++++.|++++|.+++..+..+..+++|++|++++|.+++..+ .+.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 455667777777777776544433 2566777777777766666666667777777777777664322 255666677
Q ss_pred EEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCc
Q 008024 259 LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSN 338 (580)
Q Consensus 259 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (580)
|++++|.++ .+|..+..+++|++|++++|++++..|..|.
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~--------------------------------------- 121 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR--------------------------------------- 121 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTT---------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHc---------------------------------------
Confidence 777766666 4555566666666666666666543333221
Q ss_pred cccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccc
Q 008024 339 TMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS 418 (580)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 418 (580)
.+++|+.|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus 122 --------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 122 --------------------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp --------------------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred --------------------------------------CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 234555666666666655555556666666666666666644
Q ss_pred cchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCccc
Q 008024 419 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 464 (580)
Q Consensus 419 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 464 (580)
.+..|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 4445566666666666666666 45555555556666666666554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-23 Score=203.17 Aligned_cols=205 Identities=25% Similarity=0.288 Sum_probs=128.6
Q ss_pred CCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCC
Q 008024 185 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 264 (580)
Q Consensus 185 L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 264 (580)
.+.++++++.++..+... .+++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 445555555554332222 134566666666665555555666666666666666666444444566666777777766
Q ss_pred cCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchh
Q 008024 265 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 344 (580)
Q Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (580)
.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------------------------------- 129 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF---------------------------------------------- 129 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT----------------------------------------------
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHh----------------------------------------------
Confidence 6665555556666777777777776664333322
Q ss_pred hhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhh
Q 008024 345 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 424 (580)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 424 (580)
..+++|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..|.
T Consensus 130 -------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (270)
T 2o6q_A 130 -------------------------------DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178 (270)
T ss_dssp -------------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -------------------------------CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence 1234566677777777655555567777777777777777766566677
Q ss_pred CcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCC
Q 008024 425 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 468 (580)
Q Consensus 425 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 468 (580)
.+++|++|+|++|++++..+..+..+++|+.|++++|++....+
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 77777777777777776555567777777777777777655443
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.2e-23 Score=203.01 Aligned_cols=111 Identities=25% Similarity=0.226 Sum_probs=51.2
Q ss_pred cccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCc
Q 008024 380 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 459 (580)
Q Consensus 380 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 459 (580)
+|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|+++
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 44445555555544333444455555555555555544444444445555555555555553333334444555555555
Q ss_pred CCcccccCCCCCcccccCCcccCCCcCCCCc
Q 008024 460 YNNLSGRTPDKGQFATFDESSYRGNPSLCAW 490 (580)
Q Consensus 460 ~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~ 490 (580)
+|+++..++.......+....+.||||.|+|
T Consensus 181 ~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 181 ENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 5555432222222333444444455555544
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.6e-24 Score=206.88 Aligned_cols=208 Identities=19% Similarity=0.236 Sum_probs=162.2
Q ss_pred CCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcE
Q 008024 84 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI 163 (580)
Q Consensus 84 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 163 (580)
.+++|+.|++++|.++. ...+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..++. |++
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN-LKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCE
T ss_pred cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC-CCE
Confidence 35677777777777763 23466777777777777777642 35777778888888888777555555666666 888
Q ss_pred EEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcc
Q 008024 164 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 242 (580)
Q Consensus 164 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 242 (580)
|++++|++++..+..+..+++|++|++++|.+++..+..+ .+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 8888888887666677888888888888888887766655 788888888888888877777778888999999999999
Q ss_pred cccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccc
Q 008024 243 SGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 303 (580)
Q Consensus 243 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 303 (580)
++..+..+..+++|++|++++|.+.+ .+++|+.++++.|.++|.+|.+++.+..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 98777778889999999999998874 3567888999999999999988877653
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.4e-24 Score=206.25 Aligned_cols=210 Identities=19% Similarity=0.239 Sum_probs=159.6
Q ss_pred cCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEccc
Q 008024 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 95 (580)
Q Consensus 16 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~ 95 (580)
+..+++|+.|++++|.++. + ..+..+++|++|++++|.++ .++ .+..+++|++|++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~------------------~~~--~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH------------------DIS--ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC------------------CCG--GGTTCTTCCEEECTT
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC------------------Cch--hhcCCCCCCEEECCC
Confidence 3455666666666666652 2 23555666666666666554 333 346788888888888
Q ss_pred CcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCcc
Q 008024 96 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV 175 (580)
Q Consensus 96 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 175 (580)
|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..++. |+.|++++|++++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN-LTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-CCEEECCCCCcCccC
Confidence 8888777777888888888888888888776777888888888888888888655555667776 899999999888777
Q ss_pred CccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCC
Q 008024 176 PVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS 254 (580)
Q Consensus 176 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 254 (580)
+..+..+++|+.|++++|.+++..+..+ .+++|+.|++++|.+.+. +++|+.++++.|.++|.+|.+++.++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 7778888899999999998888777655 788899999999887643 45788889999999999998887655
Q ss_pred C
Q 008024 255 N 255 (580)
Q Consensus 255 ~ 255 (580)
.
T Consensus 247 ~ 247 (272)
T 3rfs_A 247 P 247 (272)
T ss_dssp G
T ss_pred C
Confidence 4
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.5e-23 Score=197.43 Aligned_cols=182 Identities=23% Similarity=0.271 Sum_probs=105.7
Q ss_pred CCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEc
Q 008024 111 RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDI 190 (580)
Q Consensus 111 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 190 (580)
++++|++++|++++..+..+..+++|++|++++|.+++..+..+..++. |++|++++|++++..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN-LETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT-CCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC-CCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 3444444444444333334444444444444444444221222233333 555555555554444444555555666666
Q ss_pred cCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCC
Q 008024 191 SENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 269 (580)
Q Consensus 191 s~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 269 (580)
++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 6665555554443 556666666666666655555566677777777777777766556677777888888888887766
Q ss_pred ChhhhcCCCCCCEEECcCCccccc
Q 008024 270 IPDQLCQLQKLAMMDLSRNKFSGS 293 (580)
Q Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (580)
.+..+..+++|+.|++++|++...
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 666677778888888888877643
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.3e-24 Score=219.28 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=75.0
Q ss_pred EEEcccccccCccchHHhcCCCCCcEEEcccCcCCCccc----ccccCCC-CCCEEEccCCcCCccccccccCC-----C
Q 008024 65 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF----SEYMNLT-RLRHLYFENNNFSGKIKDGLLSS-----T 134 (580)
Q Consensus 65 ~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~ 134 (580)
+++++.|.+++.+|.. +...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3566777777555543 3444457777777777765555 5566666 67777777777765555555443 6
Q ss_pred cccEEecccCcCCCCChhHHhhc----cCCCcEEEeecCcCCCccCccC----CC-CCCCCEEEccCCCCC
Q 008024 135 SLQVLDISNNMLSGHIPHWMGNF----SSELEILSMSKNHLEGNVPVQL----NN-LERLRILDISENRLS 196 (580)
Q Consensus 135 ~L~~L~l~~n~l~~~~p~~~~~~----~~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~ls~n~l~ 196 (580)
+|++|++++|.+++..+..++.. +.+|++|++++|++++..+..+ .. .++|++|++++|.++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 67777777776665555544332 1226666666666654433322 22 235555555555544
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2.3e-24 Score=217.37 Aligned_cols=261 Identities=19% Similarity=0.170 Sum_probs=146.0
Q ss_pred CCCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCC----cccCCCC-CCCEEEcccCCCcccCCCCcEEEcccccccCc
Q 008024 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP----SVISNLT-SLEYLDLSHNNFEGEMKELSLLDLSRNYFSGG 76 (580)
Q Consensus 2 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~ 76 (580)
+|+.|.+++.+|..+...++|++|||++|.+++..+ +.|.+++ +|++|+|++|.++ +.
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----------------~~ 66 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-----------------FK 66 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-----------------GS
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-----------------HH
Confidence 467777777777777666677777777777775555 5566666 6766666666655 22
Q ss_pred cchHHh---cC-CCCCcEEEcccCcCCCcccccc----cCC-CCCCEEEccCCcCCccccccc----cC-CCcccEEecc
Q 008024 77 LSQSVV---TG-CFSLELLDLSNNNFEGQFFSEY----MNL-TRLRHLYFENNNFSGKIKDGL----LS-STSLQVLDIS 142 (580)
Q Consensus 77 ~~~~~~---~~-l~~L~~L~ls~n~i~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~l~ 142 (580)
.+..+. .. .++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|+++
T Consensus 67 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 67 NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 232221 11 2778888888887776555433 333 677777777777765444333 22 2577777777
Q ss_pred cCcCCCCChhH----HhhccCCCcEEEeecCcCCCccCccC----CCC-CCCCEEEccCCCCCCccccCcCCCCccEEEc
Q 008024 143 NNMLSGHIPHW----MGNFSSELEILSMSKNHLEGNVPVQL----NNL-ERLRILDISENRLSGPIASSLNLSSVEHLSL 213 (580)
Q Consensus 143 ~n~l~~~~p~~----~~~~~~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L 213 (580)
+|.+++..+.. +...+.+|++|++++|++++..+..+ ..+ ++|+.|++++|.+++....
T Consensus 147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~------------ 214 (362)
T 3goz_A 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA------------ 214 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH------------
T ss_pred CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH------------
Confidence 77776433333 33333236666666666654443322 223 3555555555555431111
Q ss_pred ccCCCCCCCcccccC-CCCCCEEEcccCcccccCC----ccccCCCCccEEEcCCCcCCCCCh-------hhhcCCCCCC
Q 008024 214 QKNALNGLIPGELFR-SCKLVTLNLRDNTFSGRIP----HQINEHSNLRFLLLGGNHLQGPIP-------DQLCQLQKLA 281 (580)
Q Consensus 214 ~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~ 281 (580)
.++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 215 -------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 215 -------ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp -------HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred -------HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 02222222 2355555555555543322 223445566666666666443322 2345666777
Q ss_pred EEECcCCcccccCChhh
Q 008024 282 MMDLSRNKFSGSIPPCF 298 (580)
Q Consensus 282 ~L~Ls~N~l~~~~p~~~ 298 (580)
.||+++|++.+..+..+
T Consensus 288 ~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 288 LVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp EECTTSCBCCGGGCHHH
T ss_pred EEecCCCcCCCcchHHH
Confidence 77777777766555443
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=7.7e-25 Score=223.09 Aligned_cols=246 Identities=17% Similarity=0.213 Sum_probs=163.8
Q ss_pred ChhHHhhccCCCcEEEeecCcCCCcc----CccCCCCCCCCEEEccCCCCCC---ccccC--------cCCCCccEEEcc
Q 008024 150 IPHWMGNFSSELEILSMSKNHLEGNV----PVQLNNLERLRILDISENRLSG---PIASS--------LNLSSVEHLSLQ 214 (580)
Q Consensus 150 ~p~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~---~~~~~--------~~l~~L~~L~L~ 214 (580)
++..+..++. |+.|++++|.+++.. +..+..+++|++|++++|.+.. ..+.. ..+++|++|+++
T Consensus 24 l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSC-CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCC-ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3334444444 555555555544332 2234455666666666643332 11111 256677777777
Q ss_pred cCCCCC----CCcccccCCCCCCEEEcccCcccccCCcccc----CC---------CCccEEEcCCCcCC-CCCh---hh
Q 008024 215 KNALNG----LIPGELFRSCKLVTLNLRDNTFSGRIPHQIN----EH---------SNLRFLLLGGNHLQ-GPIP---DQ 273 (580)
Q Consensus 215 ~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~----~~---------~~L~~L~L~~n~l~-~~~~---~~ 273 (580)
+|.+++ .++..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777765 3556677778888888888887644333333 33 78999999999887 3344 45
Q ss_pred hcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhh
Q 008024 274 LCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKR 353 (580)
Q Consensus 274 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (580)
+..+++|++|++++|.++......+..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~----------------------------------------------------- 209 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLL----------------------------------------------------- 209 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHH-----------------------------------------------------
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHH-----------------------------------------------------
Confidence 677889999999999876210000000
Q ss_pred hccccchhheeeccccceeecccccccccEEEccCCcCc----ccCChhhhccccCCeeeCcCCccccc----cchhhhC
Q 008024 354 AAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT----GEIPSDIGQLQAILALNLSNNSLSGS----IPESFSN 425 (580)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~ 425 (580)
.....+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+..
T Consensus 210 -------------------~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 210 -------------------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp -------------------TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred -------------------HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 00024567888999999986 56788888999999999999999865 5666644
Q ss_pred --cccCCeEeCCCCeeee----cCcccc-ccCCcCCeeeCcCCcccccCC
Q 008024 426 --LKMIESLDISYNKLTG----QIPPQL-TALNFLSIFNVSYNNLSGRTP 468 (580)
Q Consensus 426 --l~~L~~LdLs~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p 468 (580)
+++|++|+|++|++++ .+|..+ ..+++|++|++++|++++..|
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8999999999999997 478777 568999999999999987665
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.1e-23 Score=210.34 Aligned_cols=249 Identities=18% Similarity=0.228 Sum_probs=190.8
Q ss_pred cccEEecccCcCCCCChhHHhhc--cCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCc-cccCc-CCCCccE
Q 008024 135 SLQVLDISNNMLSGHIPHWMGNF--SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP-IASSL-NLSSVEH 210 (580)
Q Consensus 135 ~L~~L~l~~n~l~~~~p~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~-~l~~L~~ 210 (580)
.++.++++++.+. +..+..+ +. ++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+ .+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~-l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQG-VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTT-CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhcc-ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4677777777765 4555555 44 88888888888866554 55788999999999887653 33333 7889999
Q ss_pred EEcccCCCCCCCcccccCCCCCCEEEcccC-ccccc-CCccccCCCCccEEEcCCC-cCCCC-ChhhhcCCC-CCCEEEC
Q 008024 211 LSLQKNALNGLIPGELFRSCKLVTLNLRDN-TFSGR-IPHQINEHSNLRFLLLGGN-HLQGP-IPDQLCQLQ-KLAMMDL 285 (580)
Q Consensus 211 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L 285 (580)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999888777888888999999999999 67753 5666788999999999999 88754 577788899 9999999
Q ss_pred cCCc--cc-ccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhh
Q 008024 286 SRNK--FS-GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 362 (580)
Q Consensus 286 s~N~--l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (580)
++|. ++ +.+|..+
T Consensus 203 ~~~~~~~~~~~l~~~~---------------------------------------------------------------- 218 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLV---------------------------------------------------------------- 218 (336)
T ss_dssp CSCGGGSCHHHHHHHH----------------------------------------------------------------
T ss_pred CCCcccCCHHHHHHHH----------------------------------------------------------------
Confidence 9994 43 1122111
Q ss_pred eeeccccceeecccccccccEEEccCCc-CcccCChhhhccccCCeeeCcCCc-cccccchhhhCcccCCeEeCCCCeee
Q 008024 363 EFAMKNRYEIYNGSNVNRVTGLDLSCNQ-LTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNLKMIESLDISYNKLT 440 (580)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~ 440 (580)
..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......++++++|++|++++| ++
T Consensus 219 -------------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 219 -------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp -------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred -------------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 235789999999999 777888889999999999999995 43333346889999999999999 44
Q ss_pred ecCccccccC-CcCCeeeCcCCcccccCCC
Q 008024 441 GQIPPQLTAL-NFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 441 ~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~ 469 (580)
. ..+..+ ..|..|++++|++++..|.
T Consensus 285 ~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 285 D---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp T---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred H---HHHHHHHhhCcceEEecccCccccCC
Confidence 2 234444 3478888999999998885
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.9e-24 Score=218.86 Aligned_cols=246 Identities=20% Similarity=0.267 Sum_probs=134.8
Q ss_pred ccCCCCCcCEEEccCCCCCCCCC----cccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHH------hcC
Q 008024 15 CLKNLTRLKILDISSNQLNGSLP----SVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSV------VTG 84 (580)
Q Consensus 15 ~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~------~~~ 84 (580)
.+..+++|++|+|++|.++...+ ..+..+++|++|+|++|.+. ++++.+|..+ +..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--------------~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--------------RVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--------------SCGGGSHHHHHHHHHHHTT
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--------------ccccchhHHHHHHHHHHhh
Confidence 34445556666666655554322 22445555555555554332 2233444433 244
Q ss_pred CCCCcEEEcccCcCCC----cccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhc---
Q 008024 85 CFSLELLDLSNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF--- 157 (580)
Q Consensus 85 l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~--- 157 (580)
+++|++|++++|.+.. .++..+..+++|++|+|++|.++...+..+.. .+..+
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~ 152 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVN 152 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHH
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhh
Confidence 5555555555555554 23444455555555555555554222222211 11111
Q ss_pred ------cCCCcEEEeecCcCC-CccC---ccCCCCCCCCEEEccCCCCCC-----ccc-cCcCCCCccEEEcccCCCC--
Q 008024 158 ------SSELEILSMSKNHLE-GNVP---VQLNNLERLRILDISENRLSG-----PIA-SSLNLSSVEHLSLQKNALN-- 219 (580)
Q Consensus 158 ------~~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~ls~n~l~~-----~~~-~~~~l~~L~~L~L~~n~l~-- 219 (580)
+. |++|++++|+++ +.++ ..+..+++|++|++++|.++. ..+ ....+++|+.|++++|.++
T Consensus 153 ~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 153 KKAKNAPP-LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp HHHHTCCC-CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred hhcccCCC-CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence 33 555555555554 1222 234445556666666665542 122 2225566666666666664
Q ss_pred --CCCcccccCCCCCCEEEcccCccccc----CCcccc--CCCCccEEEcCCCcCCC----CChhhh-cCCCCCCEEECc
Q 008024 220 --GLIPGELFRSCKLVTLNLRDNTFSGR----IPHQIN--EHSNLRFLLLGGNHLQG----PIPDQL-CQLQKLAMMDLS 286 (580)
Q Consensus 220 --~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~--~~~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~Ls 286 (580)
..+|..+..+++|++|+|++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ .++++|++|+++
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 34566677777888888888887754 455553 37888888888888875 366666 557888888888
Q ss_pred CCcccccCC
Q 008024 287 RNKFSGSIP 295 (580)
Q Consensus 287 ~N~l~~~~p 295 (580)
+|++++..+
T Consensus 312 ~N~l~~~~~ 320 (386)
T 2ca6_A 312 GNRFSEEDD 320 (386)
T ss_dssp TSBSCTTSH
T ss_pred CCcCCcchh
Confidence 888876654
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.9e-22 Score=190.20 Aligned_cols=183 Identities=19% Similarity=0.239 Sum_probs=138.1
Q ss_pred CccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECc
Q 008024 207 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 286 (580)
Q Consensus 207 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 286 (580)
..++++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777766 3444443 467778888888777667777778888888888888877777777778888888888
Q ss_pred CCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeec
Q 008024 287 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 366 (580)
Q Consensus 287 ~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (580)
+|++++..+..+.
T Consensus 92 ~n~l~~~~~~~~~------------------------------------------------------------------- 104 (251)
T 3m19_A 92 NNQLASLPLGVFD------------------------------------------------------------------- 104 (251)
T ss_dssp TSCCCCCCTTTTT-------------------------------------------------------------------
T ss_pred CCcccccChhHhc-------------------------------------------------------------------
Confidence 8887744433321
Q ss_pred cccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccc
Q 008024 367 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 446 (580)
Q Consensus 367 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 446 (580)
.+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..
T Consensus 105 ----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 105 ----------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp ----------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ----------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 2456777888888888666666788888888888888888666667888888999999999888777778
Q ss_pred cccCCcCCeeeCcCCcccccCCC
Q 008024 447 LTALNFLSIFNVSYNNLSGRTPD 469 (580)
Q Consensus 447 l~~l~~L~~L~Ls~N~l~~~~p~ 469 (580)
+..+++|++|++++|++++....
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTTSTT
T ss_pred HhCCCCCCEEEeeCCceeCCccc
Confidence 88888899999999988876544
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=9.6e-23 Score=200.90 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=77.4
Q ss_pred CcccEEecccCcCCCCChh---HHhhccCCCcEEEeecCcCCCccCccC--CCCCCCCEEEccCCCCCCccccC-----c
Q 008024 134 TSLQVLDISNNMLSGHIPH---WMGNFSSELEILSMSKNHLEGNVPVQL--NNLERLRILDISENRLSGPIASS-----L 203 (580)
Q Consensus 134 ~~L~~L~l~~n~l~~~~p~---~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~-----~ 203 (580)
..++.+.+.++.++...-. .....+. |++|++++|.+++..|..+ ..+++|++|++++|.+++..+.. .
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSR-LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSC-CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCc-eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3567777777665421111 1122344 8999999998888888777 77888888888888877533211 1
Q ss_pred CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccccc--C--CccccCCCCccEEEcCCCcCC
Q 008024 204 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR--I--PHQINEHSNLRFLLLGGNHLQ 267 (580)
Q Consensus 204 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~--~~~~~~~~~L~~L~L~~n~l~ 267 (580)
.+++|++|++++|.+++..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 455666666666666555555555555566666665554421 1 112234445555555555443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.2e-23 Score=203.48 Aligned_cols=225 Identities=17% Similarity=0.190 Sum_probs=147.1
Q ss_pred CcEEEeecCcCCCccCc---cCCCCCCCCEEEccCCCCCCccccC---cCCCCccEEEcccCCCCCCCc----ccccCCC
Q 008024 161 LEILSMSKNHLEGNVPV---QLNNLERLRILDISENRLSGPIASS---LNLSSVEHLSLQKNALNGLIP----GELFRSC 230 (580)
Q Consensus 161 L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~---~~l~~L~~L~L~~n~l~~~~~----~~~~~~~ 230 (580)
++.+.+.++.+...... .+..+++|++|++++|.+.+..+.. ..+++|++|++++|.+++..+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 67777777766421110 1112356788888888777666554 357778888888887776443 2334567
Q ss_pred CCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCC--Ch--hhhcCCCCCCEEECcCCcccccCChhhhccccccc
Q 008024 231 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP--IP--DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 306 (580)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 306 (580)
+|++|++++|++.+..+..++.+++|++|++++|++.+. .+ ..+..+++|++|++++|+++. ++.....+
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l----- 219 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL----- 219 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH-----
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH-----
Confidence 788888888887766667777777888888888776532 11 223567777777887777752 11110000
Q ss_pred ccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEc
Q 008024 307 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL 386 (580)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 386 (580)
...+++|++|||
T Consensus 220 --------------------------------------------------------------------~~~l~~L~~L~L 231 (310)
T 4glp_A 220 --------------------------------------------------------------------AAAGVQPHSLDL 231 (310)
T ss_dssp --------------------------------------------------------------------HHHTCCCSSEEC
T ss_pred --------------------------------------------------------------------HhcCCCCCEEEC
Confidence 013456777888
Q ss_pred cCCcCcccCChhhhcc---ccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcc
Q 008024 387 SCNQLTGEIPSDIGQL---QAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 463 (580)
Q Consensus 387 s~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 463 (580)
++|++++..|..++.+ ++|++|+|++|+++ .+|..+. ++|++|||++|++++ +|. +..+++|+.|++++|++
T Consensus 232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTT
T ss_pred CCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCC
Confidence 8888877667666665 57888888888887 6666654 678888888888874 333 56677788888888877
Q ss_pred c
Q 008024 464 S 464 (580)
Q Consensus 464 ~ 464 (580)
+
T Consensus 307 ~ 307 (310)
T 4glp_A 307 L 307 (310)
T ss_dssp S
T ss_pred C
Confidence 5
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.2e-23 Score=208.20 Aligned_cols=249 Identities=20% Similarity=0.269 Sum_probs=167.9
Q ss_pred CCEEEcccCCCcc----cC--CCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCc-ccccccCCCCCCEEEcc
Q 008024 46 LEYLDLSHNNFEG----EM--KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ-FFSEYMNLTRLRHLYFE 118 (580)
Q Consensus 46 L~~L~L~~n~l~~----~l--~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~L~ 118 (580)
++.++++++.+.+ .+ ++++.|++++|.+.+..+. + .++++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4555555554443 22 5556666666665544443 2 3577777777777777654 56667777778888887
Q ss_pred CCcCCccccccccCCCcccEEecccC-cCCC-CChhHHhhccCCCcEEEeecC-cCCCc-cCccCCCCC-CCCEEEccCC
Q 008024 119 NNNFSGKIKDGLLSSTSLQVLDISNN-MLSG-HIPHWMGNFSSELEILSMSKN-HLEGN-VPVQLNNLE-RLRILDISEN 193 (580)
Q Consensus 119 ~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~-~~p~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~ls~n 193 (580)
+|.+++..+..+..+++|++|++++| .+++ .++..+..++. |++|++++| .+++. ++..+..++ +|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT-CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC-CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 77777666777777778888888877 5654 25555666666 888888887 77643 455566777 8888888887
Q ss_pred --CCC-CccccCc-CCCCccEEEcccCC-CCCCCcccccCCCCCCEEEcccCc-ccccCCccccCCCCccEEEcCCCcCC
Q 008024 194 --RLS-GPIASSL-NLSSVEHLSLQKNA-LNGLIPGELFRSCKLVTLNLRDNT-FSGRIPHQINEHSNLRFLLLGGNHLQ 267 (580)
Q Consensus 194 --~l~-~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~ 267 (580)
.++ +..+..+ .+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 343 2222222 67888888888888 666667788888899999999884 33332235778899999999998 55
Q ss_pred CCChhhhcCCCCCCEEECcCCcccccCChhhhc
Q 008024 268 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 300 (580)
Q Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 300 (580)
......+. ..+..|++++|++++..|..++.
T Consensus 285 ~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 285 DGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 44433343 23555668999999888877654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.9e-22 Score=188.78 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=106.3
Q ss_pred ccchHHhcCCCCCcEEEcccCc-CCCcccccccCCCCCCEEEccC-CcCCccccccccCCCcccEEecccCcCCCCChhH
Q 008024 76 GLSQSVVTGCFSLELLDLSNNN-FEGQFFSEYMNLTRLRHLYFEN-NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 153 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 153 (580)
.++...+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|.
T Consensus 45 ~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~- 122 (239)
T 2xwt_C 45 TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD- 122 (239)
T ss_dssp EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-
T ss_pred EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-
Confidence 4555556667777777777775 6655555677777777777776 77775555666777777777777777763 554
Q ss_pred HhhccCCCc---EEEeecC-cCCCccCccCCCCCCCC-EEEccCCCCCCccccCcCCCCccEEEcccCC-CCCCCccccc
Q 008024 154 MGNFSSELE---ILSMSKN-HLEGNVPVQLNNLERLR-ILDISENRLSGPIASSLNLSSVEHLSLQKNA-LNGLIPGELF 227 (580)
Q Consensus 154 ~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 227 (580)
+..++. |+ +|++++| .+++..+..|..+++|+ .|++++|.++......+..++|++|++++|. +++..+..+.
T Consensus 123 ~~~l~~-L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 123 LTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp CTTCCB-CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTT
T ss_pred cccccc-cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhh
Confidence 555544 55 6666666 66655555566666666 6666666665443333333455555555552 5444344444
Q ss_pred CC-CCCCEEEcccCcccccCCccccCCCCccEEEcCC
Q 008024 228 RS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 263 (580)
Q Consensus 228 ~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 263 (580)
.+ ++|+.|++++|++++ +|.. .+++|+.|++++
T Consensus 202 ~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN 235 (239)
T ss_dssp TCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred ccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence 44 455555555555542 2222 334444444443
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3e-22 Score=189.61 Aligned_cols=196 Identities=16% Similarity=0.175 Sum_probs=127.9
Q ss_pred CCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCC-CcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEccc-Cc
Q 008024 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN-FEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN-NN 97 (580)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~-n~ 97 (580)
++|++|++++|++++..+..|.++++|++|++++|. ++ .++...|.++++|++|++++ |.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------QLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------EECTTTEESCTTCCEEEEEEETT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------eeCHhHcCCCcCCcEEECCCCCC
Confidence 389999999999997777789999999999999996 76 45554556666666666666 66
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCccccccccCCCccc---EEecccC-cCCCCChhHHhhccCCCc-EEEeecCcCC
Q 008024 98 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ---VLDISNN-MLSGHIPHWMGNFSSELE-ILSMSKNHLE 172 (580)
Q Consensus 98 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~p~~~~~~~~~L~-~L~l~~n~l~ 172 (580)
++...+..|.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..++. |+ .|++++|+++
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~-L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN-ETLTLKLYNNGFT 169 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS-SEEEEECCSCCCC
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc-ceeEEEcCCCCCc
Confidence 665555566666666666666666663 444 55666666 6666666 665333334555555 66 6666666666
Q ss_pred CccCccCCCCCCCCEEEccCCC-CCCccccCc-CC-CCccEEEcccCCCCCCCcccccCCCCCCEEEcccC
Q 008024 173 GNVPVQLNNLERLRILDISENR-LSGPIASSL-NL-SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 240 (580)
Q Consensus 173 ~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~-~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 240 (580)
...+..+.. ++|+.|++++|+ +++..+..+ .+ ++|+.|++++|.+++..+. .+++|+.|+++++
T Consensus 170 ~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 322233333 666777777773 665544444 45 6677777777777643332 4456777776654
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.2e-21 Score=183.81 Aligned_cols=180 Identities=21% Similarity=0.234 Sum_probs=139.7
Q ss_pred CCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCC
Q 008024 184 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 263 (580)
Q Consensus 184 ~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 263 (580)
..+.++++++.++..+.... ++++.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34556666666554443322 4677777777777777676777788888888888888877777788888888888888
Q ss_pred CcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccch
Q 008024 264 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 343 (580)
Q Consensus 264 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (580)
|.+++..+..+..+++|++|++++|++++..+..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------------------------------------------- 127 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--------------------------------------------- 127 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---------------------------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHh---------------------------------------------
Confidence 88887777778888888889998888874443332
Q ss_pred hhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhh
Q 008024 344 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF 423 (580)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 423 (580)
..+++|+.|+|++|++++..+..++.+++|++|+|++|++++..+..|
T Consensus 128 --------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 128 --------------------------------DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp --------------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred --------------------------------ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 234678889999999987666678999999999999999997777889
Q ss_pred hCcccCCeEeCCCCeeeec
Q 008024 424 SNLKMIESLDISYNKLTGQ 442 (580)
Q Consensus 424 ~~l~~L~~LdLs~N~l~~~ 442 (580)
..+++|+.|+|++|++++.
T Consensus 176 ~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSCCBCTT
T ss_pred hCCCCCCEEEeeCCceeCC
Confidence 9999999999999999865
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.4e-21 Score=189.38 Aligned_cols=192 Identities=21% Similarity=0.338 Sum_probs=109.0
Q ss_pred CCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCc
Q 008024 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 97 (580)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 97 (580)
++++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +.++++|++|++++|.
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~------------------~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT------------------DLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC------------------CCGG--GTTCCSCCEEECCSCC
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC------------------CChh--HccCCCCCEEEccCCc
Confidence 45566666666666552 33 3555555555555555554 3343 4566677777777776
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCc
Q 008024 98 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 177 (580)
Q Consensus 98 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~ 177 (580)
+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.+++ ++. +..++. |+.|++++|++++..+
T Consensus 97 l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~-L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 97 LKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTN-LQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp CSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTT-CCEEECCSSCCCCCGG-
T ss_pred CCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCC-ccEEEccCCcCCCChh-
Confidence 6642 2466666777777777766642 2 26666666666666666663 332 555554 6666666666664322
Q ss_pred cCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccc
Q 008024 178 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 243 (580)
Q Consensus 178 ~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (580)
+..+++|+.|++++|.+++..+ ...+++|++|++++|.+++.. .+..+++|+.|++++|.++
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 5556666666666666554433 224555555555555555332 2455555555555555554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=9.2e-21 Score=186.27 Aligned_cols=192 Identities=20% Similarity=0.278 Sum_probs=123.2
Q ss_pred CCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEE
Q 008024 85 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 164 (580)
Q Consensus 85 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L 164 (580)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..++. |+.|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~-L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQS-IKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTT-CCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCC-CCEE
Confidence 4456666666665553 22 45556666666666666653322 5566666666666666653 33 3555555 6666
Q ss_pred EeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccc
Q 008024 165 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 244 (580)
Q Consensus 165 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (580)
++++|++++. + .+..+++|+.|++++|.+++..+ ...+++|+.|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 6666666642 2 26666777777777777665443 3366777777777777775433 6777788888888888774
Q ss_pred cCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccc
Q 008024 245 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 292 (580)
Q Consensus 245 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (580)
..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 432 677888888888888887543 37778888888888888863
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.1e-20 Score=189.39 Aligned_cols=241 Identities=17% Similarity=0.145 Sum_probs=179.7
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcc
Q 008024 23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 102 (580)
Q Consensus 23 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~ 102 (580)
++++.++++++ .+|..+ .+++++|+|++|+|+ .+|...|.++++|++|+|++|.+.+.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~------------------~i~~~~f~~l~~L~~L~Ls~N~i~~~i 70 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR------------------VIQKGAFSGFGDLEKIEISQNDVLEVI 70 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS------------------EECTTSSTTCTTCCEEEEECCTTCCEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC------------------CcCHHHHcCCCCCCEEECcCCCCCCcc
Confidence 56788888887 566655 246777777777666 778777888889999999999886544
Q ss_pred c-ccccCCCCCCE-EEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeec-CcCCCccCccC
Q 008024 103 F-SEYMNLTRLRH-LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK-NHLEGNVPVQL 179 (580)
Q Consensus 103 ~-~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~~ 179 (580)
+ ..|.+++++++ +.+++|+++...|+.|..+++|++|++++|.+++..+..+..... +..|++.+ +++....+..|
T Consensus 71 ~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 71 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp CTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS-CEEEEEESCTTCCEECTTSS
T ss_pred ChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch-hhhhhhccccccccccccch
Confidence 4 46778888775 556678888777788888999999999999888544444444444 78888866 56665555566
Q ss_pred CCCC-CCCEEEccCCCCCCccccCcCCCCccEEEccc-CCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCcc
Q 008024 180 NNLE-RLRILDISENRLSGPIASSLNLSSVEHLSLQK-NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 257 (580)
Q Consensus 180 ~~l~-~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 257 (580)
..+. .++.|++++|+++...+..+...+|+++++++ |.++...+..|..+++|++|++++|+++...+.. +.+|+
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~ 226 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLK 226 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCC
T ss_pred hhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccch
Confidence 6664 68899999999998877777888999999975 6677555567888999999999999998543333 45666
Q ss_pred EEEcCCCcCCCCChhhhcCCCCCCEEECcCCc
Q 008024 258 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 289 (580)
Q Consensus 258 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (580)
.|.+.++.-...+|. +..+++|+.++++++.
T Consensus 227 ~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 227 KLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp EEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred HhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 676665544446664 7889999999997653
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.9e-20 Score=186.38 Aligned_cols=238 Identities=18% Similarity=0.114 Sum_probs=179.1
Q ss_pred CCCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHh
Q 008024 3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVV 82 (580)
Q Consensus 3 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~ 82 (580)
-++++++. +|..+ .+++++|+|++|+|+...+.+|+++++|++|+|++|++. +.+|...|
T Consensus 16 C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-----------------~~i~~~~f 75 (350)
T 4ay9_X 16 CQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-----------------EVIEADVF 75 (350)
T ss_dssp EESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-----------------CEECTTSB
T ss_pred ecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-----------------CccChhHh
Confidence 35677887 45444 368999999999999666678999999999999988875 25677777
Q ss_pred cCCCCCcE-EEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEeccc-CcCCCCChhHHhhccCC
Q 008024 83 TGCFSLEL-LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN-NMLSGHIPHWMGNFSSE 160 (580)
Q Consensus 83 ~~l~~L~~-L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~~~~~ 160 (580)
.+++++++ +.++.|+++...+..|.++++|++|++++|+++...+..+....++..|++.+ +.+...-+..+......
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence 88888765 56667889888888899999999999999999866666677777888888866 45553333345555555
Q ss_pred CcEEEeecCcCCCccCccCCCCCCCCEEEccC-CCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 008024 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 238 (580)
Q Consensus 161 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 238 (580)
++.|++++|+++. ++.......+|+.+++++ |.++...+..+ .+++|++|++++|+++...+..+ .+|+.|.+.
T Consensus 156 l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l 231 (350)
T 4ay9_X 156 SVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRAR 231 (350)
T ss_dssp CEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECT
T ss_pred hhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhc
Confidence 8899999999984 444444567899999975 66666666655 78999999999999986544443 467777766
Q ss_pred cCcccccCCccccCCCCccEEEcCCCc
Q 008024 239 DNTFSGRIPHQINEHSNLRFLLLGGNH 265 (580)
Q Consensus 239 ~n~l~~~~~~~~~~~~~L~~L~L~~n~ 265 (580)
++.--..+| .+..+++|+.+++.++.
T Consensus 232 ~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 232 STYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred cCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 654444667 47889999999987543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=5.5e-20 Score=193.87 Aligned_cols=189 Identities=22% Similarity=0.356 Sum_probs=146.9
Q ss_pred CCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEccc
Q 008024 160 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 239 (580)
Q Consensus 160 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 239 (580)
+++.|++++|.+++ +|..+ .++|++|++++|.++..+ ..+++|+.|++++|.+++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 39999999999986 66655 378999999999998544 347889999999999986 555 554 899999999
Q ss_pred CcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCC
Q 008024 240 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS 319 (580)
Q Consensus 240 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 319 (580)
|++++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------- 179 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------- 179 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence 99986 565 57889999999999885 555 56788999999998874 443 21
Q ss_pred ccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhh
Q 008024 320 PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI 399 (580)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 399 (580)
++|+.|+|++|.|+ .+|. +
T Consensus 180 -----------------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 180 -----------------------------------------------------------ESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp -----------------------------------------------------------TTCCEEECCSSCCS-SCCC-C
T ss_pred -----------------------------------------------------------CCCCEEECcCCCCC-chhh-H
Confidence 36777899999888 6666 5
Q ss_pred hccccC-------CeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCc
Q 008024 400 GQLQAI-------LALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF 452 (580)
Q Consensus 400 ~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 452 (580)
.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 54 66 88888888888 67887878888888888888888888888776544
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.5e-20 Score=169.98 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=56.6
Q ss_pred CcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEccc
Q 008024 161 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 239 (580)
Q Consensus 161 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 239 (580)
+++|++++|++++..+..+..+++|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 4444444444443333334444445555554444443333332 344444444444444433333334444444444444
Q ss_pred CcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcc
Q 008024 240 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 290 (580)
Q Consensus 240 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (580)
|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 444433333344444444444444444433333344444444444444433
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=8.8e-20 Score=192.34 Aligned_cols=189 Identities=22% Similarity=0.296 Sum_probs=139.3
Q ss_pred CCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEe
Q 008024 87 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 166 (580)
Q Consensus 87 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l 166 (580)
+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT---TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc---CCCEEEC
Confidence 77888888887775 55544 367888888888877 455 346788888888888874 666 433 4888888
Q ss_pred ecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccC
Q 008024 167 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 246 (580)
Q Consensus 167 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 246 (580)
++|++++ +|. .+++|+.|++++|.+++.+. .+++|+.|++++|.+++ +|. +. ++|+.|++++|+|+ .+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 8888875 554 56788888888888876443 56788888888888876 455 44 78888888888887 56
Q ss_pred CccccCCCCc-------cEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccc
Q 008024 247 PHQINEHSNL-------RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 303 (580)
Q Consensus 247 ~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 303 (580)
|. +.. +| +.|+|++|.++ .+|..+..+++|+.|++++|++++.+|..+..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 65 543 66 88888888888 57777777888888888888888888888777643
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.2e-19 Score=167.76 Aligned_cols=175 Identities=19% Similarity=0.222 Sum_probs=86.8
Q ss_pred EEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccC
Q 008024 65 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 144 (580)
Q Consensus 65 ~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 144 (580)
.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3444444443 444432 345666666666666555455556666666666666665444444555566666666666
Q ss_pred cCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCc
Q 008024 145 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP 223 (580)
Q Consensus 145 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 223 (580)
.+++..+..+..++. |++|++++|++++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQ-LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccC-CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 555333333344444 5555555555554444444555555555555555544433322 34444444444443332
Q ss_pred ccccCCCCCCEEEcccCcccccCCcccc
Q 008024 224 GELFRSCKLVTLNLRDNTFSGRIPHQIN 251 (580)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (580)
.+++|+.|+++.|+++|.+|.+++
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCc
Confidence 122344444444444444444443
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=7.6e-20 Score=170.27 Aligned_cols=91 Identities=22% Similarity=0.247 Sum_probs=68.4
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeee
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 457 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 457 (580)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 34566677777777766666677777788888888888777777777788888888888888877777777788888888
Q ss_pred CcCCcccccCC
Q 008024 458 VSYNNLSGRTP 468 (580)
Q Consensus 458 Ls~N~l~~~~p 468 (580)
+++|++++..+
T Consensus 160 L~~N~l~c~c~ 170 (220)
T 2v70_A 160 LLANPFNCNCY 170 (220)
T ss_dssp CCSCCEECSGG
T ss_pred ecCcCCcCCCc
Confidence 88887776554
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.3e-19 Score=182.40 Aligned_cols=177 Identities=25% Similarity=0.218 Sum_probs=124.5
Q ss_pred cEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCcccc-CCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcC
Q 008024 209 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN-EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 287 (580)
Q Consensus 209 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 287 (580)
+.++++++.++. +|..+. +.++.|+|++|++++..+..+. .+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 577888888774 455443 3578888888888876666676 788888888888888776667778888888888888
Q ss_pred CcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeecc
Q 008024 288 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 367 (580)
Q Consensus 288 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (580)
|++++..+..|.
T Consensus 98 N~l~~~~~~~~~-------------------------------------------------------------------- 109 (361)
T 2xot_A 98 NHLHTLDEFLFS-------------------------------------------------------------------- 109 (361)
T ss_dssp SCCCEECTTTTT--------------------------------------------------------------------
T ss_pred CcCCcCCHHHhC--------------------------------------------------------------------
Confidence 887654333332
Q ss_pred ccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhh---hCcccCCeEeCCCCeeeecCc
Q 008024 368 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF---SNLKMIESLDISYNKLTGQIP 444 (580)
Q Consensus 368 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~~~~p 444 (580)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+
T Consensus 110 ---------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 110 ---------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp ---------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred ---------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 24567778888888877667777778888888888888875444444 567778888888888876555
Q ss_pred cccccCCc--CCeeeCcCCcccc
Q 008024 445 PQLTALNF--LSIFNVSYNNLSG 465 (580)
Q Consensus 445 ~~l~~l~~--L~~L~Ls~N~l~~ 465 (580)
..+..++. |+.|++++|++..
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEEC
T ss_pred HHhhhccHhhcceEEecCCCccC
Confidence 66666665 3667777776653
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=7.2e-19 Score=163.66 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=44.0
Q ss_pred cccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCc
Q 008024 380 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 459 (580)
Q Consensus 380 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 459 (580)
+|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+++
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 34445555555543333334455555555555555555445555555555555555555554444445555555555555
Q ss_pred CCccc
Q 008024 460 YNNLS 464 (580)
Q Consensus 460 ~N~l~ 464 (580)
+|++.
T Consensus 161 ~N~~~ 165 (220)
T 2v9t_B 161 QNPFI 165 (220)
T ss_dssp SSCEE
T ss_pred CCCcC
Confidence 55553
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=5.1e-19 Score=178.02 Aligned_cols=178 Identities=26% Similarity=0.217 Sum_probs=144.3
Q ss_pred CEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCccccc-CCCCCCEEEcccCcccccCCccccCCCCccEEEcCCC
Q 008024 186 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF-RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 264 (580)
Q Consensus 186 ~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 264 (580)
+.++++++.++..+... ...++.|++++|.+++..+..+. .+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 68899999888755443 34689999999999977777776 8899999999999999877788999999999999999
Q ss_pred cCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchh
Q 008024 265 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 344 (580)
Q Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (580)
++++..+..|..+++|++|+|++|++++..|..|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--------------------------------------------- 133 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE--------------------------------------------- 133 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT---------------------------------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC---------------------------------------------
Confidence 99877777889999999999999999866555442
Q ss_pred hhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhh---hccccCCeeeCcCCccccccch
Q 008024 345 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI---GQLQAILALNLSNNSLSGSIPE 421 (580)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~ 421 (580)
.+++|+.|+|++|++++..+..+ ..+++|+.|+|++|+|++..+.
T Consensus 134 --------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 134 --------------------------------DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp --------------------------------TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred --------------------------------CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 34678889999999985333334 5789999999999999966667
Q ss_pred hhhCccc--CCeEeCCCCeeeec
Q 008024 422 SFSNLKM--IESLDISYNKLTGQ 442 (580)
Q Consensus 422 ~~~~l~~--L~~LdLs~N~l~~~ 442 (580)
.+..++. |+.|+|++|.+...
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEECC
T ss_pred HhhhccHhhcceEEecCCCccCC
Confidence 8888887 48899999999853
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.9e-18 Score=168.17 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=37.2
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeee
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 441 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 441 (580)
+++|+.|++++|++++..| +..+++|+.|+|++|.+++ +|. +..+++|+.|++++|+++.
T Consensus 155 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 3456666666666664333 6666666677777776663 332 6666777777777776664
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.5e-18 Score=168.94 Aligned_cols=150 Identities=23% Similarity=0.290 Sum_probs=89.4
Q ss_pred cCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCc
Q 008024 83 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 162 (580)
Q Consensus 83 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 162 (580)
..+++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+..+++|++|++++|.+++ + ..+..++. |+
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~-L~ 137 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ-LE 137 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTT-CC
T ss_pred hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCC-CC
Confidence 345555555555555554332 5555555555555555543 22 25555666666666665553 2 23445554 66
Q ss_pred EEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcc
Q 008024 163 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 242 (580)
Q Consensus 163 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 242 (580)
.|++++|++++. ..+..+++|+.|++++|.+++..+ ...+++|+.|++++|.+++. + .+..+++|+.|++++|++
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcc
Confidence 666666666543 345666667777777776665544 33667777777777777643 3 367778888888888887
Q ss_pred cc
Q 008024 243 SG 244 (580)
Q Consensus 243 ~~ 244 (580)
+.
T Consensus 213 ~~ 214 (291)
T 1h6t_A 213 LN 214 (291)
T ss_dssp EC
T ss_pred cC
Confidence 74
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.5e-18 Score=161.05 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=104.1
Q ss_pred CCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCc
Q 008024 232 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 311 (580)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 311 (580)
-+.++.++++++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++.+..+..|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~------------- 84 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF------------- 84 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc-------------
Confidence 445666666665 4444332 566677777777766666666667777777777776653222222
Q ss_pred ccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcC
Q 008024 312 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 391 (580)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 391 (580)
..+++|+.|+|++|++
T Consensus 85 ----------------------------------------------------------------~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 85 ----------------------------------------------------------------DSLTQLTVLDLGTNQL 100 (229)
T ss_dssp ----------------------------------------------------------------TTCTTCCEEECCSSCC
T ss_pred ----------------------------------------------------------------ccCCCcCEEECCCCcC
Confidence 1235566677777777
Q ss_pred cccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccccCC
Q 008024 392 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 468 (580)
Q Consensus 392 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 468 (580)
++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7555556677777888888888877 677777777888888888888876656667777788888888887776554
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.5e-18 Score=185.12 Aligned_cols=171 Identities=23% Similarity=0.346 Sum_probs=77.9
Q ss_pred CCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccC
Q 008024 17 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 96 (580)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n 96 (580)
..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.++ .++. +..+++|+.|+|++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~------------------~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT------------------DIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC------------------CCGG--GGGCTTCCEEECCSS
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC------------------CChh--hccCCCCCEEECcCC
Confidence 345555555555555542 22 3455555555555555444 2222 344555555555555
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccC
Q 008024 97 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 176 (580)
Q Consensus 97 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~ 176 (580)
.+.+. +.+..+++|++|+|++|.+.+. ..+..+++|+.|++++|.+++. ..+..++. |+.|+|++|.+.+..|
T Consensus 98 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~-L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 98 KIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQISDIVP 170 (605)
T ss_dssp CCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT-CSEEECCSSCCCCCGG
T ss_pred CCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCC-CCEEECcCCcCCCchh
Confidence 55431 2344555555555555555421 2344445555555555554422 23344443 4444444444443333
Q ss_pred ccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCC
Q 008024 177 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 219 (580)
Q Consensus 177 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 219 (580)
+..+++|+.|+|++|.+++. +....+++|+.|++++|.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEE
T ss_pred --hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCc
Confidence 44444444444444444432 22223444444444444443
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=9.5e-18 Score=157.16 Aligned_cols=157 Identities=23% Similarity=0.298 Sum_probs=128.7
Q ss_pred CccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECc
Q 008024 207 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 286 (580)
Q Consensus 207 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 286 (580)
..+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|.++...+..|..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4566777777776 4454443 688999999999988778888889999999999999986666778889999999999
Q ss_pred CCcccccCChhhhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeec
Q 008024 287 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 366 (580)
Q Consensus 287 ~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (580)
+|++++..+..|.
T Consensus 97 ~N~l~~l~~~~~~------------------------------------------------------------------- 109 (229)
T 3e6j_A 97 TNQLTVLPSAVFD------------------------------------------------------------------- 109 (229)
T ss_dssp SSCCCCCCTTTTT-------------------------------------------------------------------
T ss_pred CCcCCccChhHhC-------------------------------------------------------------------
Confidence 9998754443332
Q ss_pred cccceeecccccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCc
Q 008024 367 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 444 (580)
Q Consensus 367 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 444 (580)
.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..+
T Consensus 110 ----------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 110 ----------RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ----------TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ----------cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 3467888999999998 788889999999999999999997777789999999999999999986543
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.9e-18 Score=156.79 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=110.4
Q ss_pred cCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhccccccc
Q 008024 227 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 306 (580)
Q Consensus 227 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 306 (580)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-------- 108 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-------- 108 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC--------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh--------
Confidence 44556777777777776 445 5677777777777777664 23357777888888888887765444332
Q ss_pred ccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEc
Q 008024 307 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL 386 (580)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 386 (580)
..+++|+.|++
T Consensus 109 ---------------------------------------------------------------------~~l~~L~~L~L 119 (197)
T 4ezg_A 109 ---------------------------------------------------------------------SGLTSLTLLDI 119 (197)
T ss_dssp ---------------------------------------------------------------------TTCTTCCEEEC
T ss_pred ---------------------------------------------------------------------cCCCCCCEEEe
Confidence 23456777888
Q ss_pred cCCcCcccCChhhhccccCCeeeCcCCc-cccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcccc
Q 008024 387 SCNQLTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 465 (580)
Q Consensus 387 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 465 (580)
++|++++..|..++.+++|++|++++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 8888887777788888888888888887 55 555 58888888888888888884 44 67888888888888888753
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=157.33 Aligned_cols=155 Identities=23% Similarity=0.262 Sum_probs=120.6
Q ss_pred cEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccC-ccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcc
Q 008024 137 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ 214 (580)
Q Consensus 137 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~ 214 (580)
+.+++++|.++ .+|..+ +..++.|++++|++++..+ ..|..+++|+.|++++|.+++..+..+ .+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46666666666 455533 2236777777777775533 346777888888888888877666544 77888888888
Q ss_pred cCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccC
Q 008024 215 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 294 (580)
Q Consensus 215 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (580)
+|.+++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|.+++..|..+..+++|+.|++++|++.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 88888777777888889999999999998887888888999999999999998877888888999999999999887544
Q ss_pred C
Q 008024 295 P 295 (580)
Q Consensus 295 p 295 (580)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 3
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=9.7e-18 Score=178.80 Aligned_cols=191 Identities=22% Similarity=0.345 Sum_probs=139.6
Q ss_pred CcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEee
Q 008024 88 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 167 (580)
Q Consensus 88 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 167 (580)
+..+.++.+.+.... .+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++. +. +..++. |+.|+|+
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~-L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKN-LGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTT-CCEEECC
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCC-CCEEECc
Confidence 444455555555432 24556777777777777763 33 467777777777777777743 33 666666 8888888
Q ss_pred cCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCC
Q 008024 168 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 247 (580)
Q Consensus 168 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (580)
+|.+.+ ++ .+..+++|+.|++++|.+.+. +....+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 887774 33 577888888888888888764 3444788888888888888865 567888889999999998886655
Q ss_pred ccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccC
Q 008024 248 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 294 (580)
Q Consensus 248 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 294 (580)
+..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|++.+..
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred --hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 7888899999999998885 34 5888899999999999887543
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=8.6e-18 Score=156.34 Aligned_cols=132 Identities=18% Similarity=0.269 Sum_probs=66.5
Q ss_pred CCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEe
Q 008024 87 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 166 (580)
Q Consensus 87 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l 166 (580)
+|++|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|++++|.+++..+..+..++. |++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~-L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS-LQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT-CCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC-CCEEEC
Confidence 4444455555444444444444555555555555554444444555555555555555554222222333443 555555
Q ss_pred ecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCC
Q 008024 167 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALN 219 (580)
Q Consensus 167 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~ 219 (580)
++|++++..+..|..+++|+.|++++|.+++..+..+ .+++|+.|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555445555555555555555555555544433 4555666666665554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=9.9e-18 Score=153.23 Aligned_cols=152 Identities=14% Similarity=0.219 Sum_probs=78.1
Q ss_pred CCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCc
Q 008024 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 97 (580)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 97 (580)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+..+++|++|++++|.
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~------------------~~~--~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT------------------NYN--PISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS------------------CCG--GGTTCTTCCEEEEECTT
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC------------------cch--hhhcCCCCCEEEeECCc
Confidence 3445555555555555 333 3455555555555554333 222 13445566666666666
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCc-CCCCChhHHhhccCCCcEEEeecCcCCCccC
Q 008024 98 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM-LSGHIPHWMGNFSSELEILSMSKNHLEGNVP 176 (580)
Q Consensus 98 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~ 176 (580)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|. ++ .+| .+..++. |+.|++++|++++ ++
T Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~-L~~L~l~~n~i~~-~~ 175 (197)
T 4ezg_A 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPE-LKSLNIQFDGVHD-YR 175 (197)
T ss_dssp CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSS-CCEEECTTBCCCC-CT
T ss_pred cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCC-CCEEECCCCCCcC-hH
Confidence 655455555556666666666666655455555555666666666655 43 333 3444444 5555555555553 22
Q ss_pred ccCCCCCCCCEEEccCCCCC
Q 008024 177 VQLNNLERLRILDISENRLS 196 (580)
Q Consensus 177 ~~~~~l~~L~~L~ls~n~l~ 196 (580)
.+..+++|+.|++++|++.
T Consensus 176 -~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -TGGGCSSCCEEEECBC---
T ss_pred -HhccCCCCCEEEeeCcccC
Confidence 3445555555555555543
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.2e-18 Score=154.26 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=79.7
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeee
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 457 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 457 (580)
+++|++|+|++|++++..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45667777777777777777777788888888888888877777788888888888888888877788888888888888
Q ss_pred CcCCcccccCCCCCcccccCCcccCCCcCCCCcc
Q 008024 458 VSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 458 Ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~ 491 (580)
+++|++++..+.......+....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 8888887765532111112222344555566543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.9e-17 Score=158.47 Aligned_cols=170 Identities=21% Similarity=0.278 Sum_probs=89.6
Q ss_pred CCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcC
Q 008024 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 98 (580)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i 98 (580)
+.+++.++++++.+++. + .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~------------------~l~-~-l~~l~~L~~L~L~~N~i 75 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ------------------SLA-G-MQFFTNLKELHLSHNQI 75 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC------------------CCT-T-GGGCTTCCEEECCSSCC
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc------------------cch-H-HhhCCCCCEEECCCCcc
Confidence 44556666666666632 2 4556666666666666655 233 1 23455555555555555
Q ss_pred CCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCcc
Q 008024 99 EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 178 (580)
Q Consensus 99 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~ 178 (580)
++..+ +.++++|++|++++|++++ ++. +.. ++|++|++++|.+++ ++ .+..++. |+.|++++|++++. + .
T Consensus 76 ~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~-L~~L~Ls~N~i~~~-~-~ 145 (263)
T 1xeu_A 76 SDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKN-LEILSIRNNKLKSI-V-M 145 (263)
T ss_dssp CCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTT-CCEEECTTSCCCBC-G-G
T ss_pred CCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCccc-ccEEECCCCcCCCC-h-H
Confidence 53322 5555555555555555543 222 112 555555555555552 22 3444444 55555555555532 2 4
Q ss_pred CCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCC
Q 008024 179 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 221 (580)
Q Consensus 179 ~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 221 (580)
+..+++|+.|++++|.+++. .....+++|+.|++++|.+++.
T Consensus 146 l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 55556666666666666554 2233566666666666666543
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=4.5e-18 Score=168.84 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=82.7
Q ss_pred CCCcCEEEccCCCCCCCCCcccCC-CCCCCEEEcccCCCc--c----cCCCCcEEEcccccccCccchHHhcC-------
Q 008024 19 LTRLKILDISSNQLNGSLPSVISN-LTSLEYLDLSHNNFE--G----EMKELSLLDLSRNYFSGGLSQSVVTG------- 84 (580)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~--~----~l~~L~~L~Ls~n~~~~~~~~~~~~~------- 84 (580)
+.+++.|.++++ +.......+.. +++|++|||++|++. . .++.++.+.+..| .+|...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 556788888764 22122223333 777888888888777 1 2333444555555 456677777
Q ss_pred -CCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEeccc
Q 008024 85 -CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 143 (580)
Q Consensus 85 -l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 143 (580)
+++|+.|++.+ .++.+...+|.++++|+++++.+|.+....+.+|..+.++..+....
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 88999999988 78777777888889999999988888767777888877777776655
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.2e-17 Score=159.88 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=92.8
Q ss_pred CCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEe
Q 008024 87 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 166 (580)
Q Consensus 87 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l 166 (580)
+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..++. |+.|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~-L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTK-LEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSS-CCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCC-CCEEEC
Confidence 4555556666665322 3555566666666666655 233 45555555555555555552 222 444444 555555
Q ss_pred ecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccC
Q 008024 167 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 246 (580)
Q Consensus 167 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 246 (580)
++|+++ +..... . ++|+.|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~------------------------~l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 93 NRNRLK------------------------NLNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp CSSCCS------------------------CCTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred CCCccC------------------------CcCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence 555544 322211 1 4555555555555532 2355666666666666666643
Q ss_pred CccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCccccc
Q 008024 247 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 293 (580)
Q Consensus 247 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 293 (580)
+ .+..+++|++|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 456666677777777766644 4566667777777777776643
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.8e-20 Score=195.38 Aligned_cols=195 Identities=22% Similarity=0.201 Sum_probs=102.1
Q ss_pred CCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCC-------------Ccc-------cCCCCcEEE-cccccccC
Q 008024 17 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN-------------FEG-------EMKELSLLD-LSRNYFSG 75 (580)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------l~~-------~l~~L~~L~-Ls~n~~~~ 75 (580)
...++|+.|+|++|+++ .+|+.++++++|++|++++|. +.+ .+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788999999999887 788889999999999987664 111 334444444 3333222
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHh
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 155 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 155 (580)
.++ .+.+++|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++
T Consensus 424 ~L~-----------~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 DLR-----------SKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HHH-----------HHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred hhh-----------hhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 111 11111222221110 135555555555553 333 555555555555555555 4555555
Q ss_pred hccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCcc-ccCc-CCCCccEEEcccCCCCCCCcc---cccCCC
Q 008024 156 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI-ASSL-NLSSVEHLSLQKNALNGLIPG---ELFRSC 230 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~-~l~~L~~L~L~~n~l~~~~~~---~~~~~~ 230 (580)
.++. |+.|++++|++++ +| .++.+++|+.|++++|.+++.. +..+ .+++|+.|++++|.+++.+|. .+..++
T Consensus 484 ~l~~-L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 484 ALRC-LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GCTT-CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred cCCC-CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 5554 5555555555553 33 4555555555555555555542 2222 455555555555555543321 122245
Q ss_pred CCCEEE
Q 008024 231 KLVTLN 236 (580)
Q Consensus 231 ~L~~L~ 236 (580)
+|+.|+
T Consensus 561 ~L~~L~ 566 (567)
T 1dce_A 561 SVSSIL 566 (567)
T ss_dssp TCSEEE
T ss_pred ccCccC
Confidence 565554
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=5.7e-17 Score=147.35 Aligned_cols=132 Identities=26% Similarity=0.382 Sum_probs=90.8
Q ss_pred CEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChh-hhcCCCCCCEEECcCCcccccCChhhhcccccccccCCc
Q 008024 233 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 311 (580)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 311 (580)
+.+++++|+++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|++++..|..|.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------ 75 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE------------ 75 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC------------
Confidence 55666666664 4554443 2666777777766654443 366677777777777777655554432
Q ss_pred ccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcC
Q 008024 312 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 391 (580)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 391 (580)
.+++|+.|+|++|++
T Consensus 76 -----------------------------------------------------------------~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 76 -----------------------------------------------------------------GASHIQELQLGENKI 90 (192)
T ss_dssp -----------------------------------------------------------------TCTTCCEEECCSCCC
T ss_pred -----------------------------------------------------------------CcccCCEEECCCCcC
Confidence 234566677777777
Q ss_pred cccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCc
Q 008024 392 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 444 (580)
Q Consensus 392 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 444 (580)
++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 76666677788888888888888887778888888888888888888886554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=5.7e-18 Score=185.14 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=103.4
Q ss_pred EeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccc
Q 008024 165 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 244 (580)
Q Consensus 165 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (580)
++..|.+. ..+..+..++.|+.|+|++|.+.......+.+++|++|+|++|.++ .+|..+..+++|++|+|++|+|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 34445554 5677788889999999999998876666678999999999999998 77888899999999999999998
Q ss_pred cCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhc
Q 008024 245 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 300 (580)
Q Consensus 245 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 300 (580)
.+|..++.+++|++|+|++|.++ .+|..|..+++|++|+|++|++++.+|..+..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 77889999999999999999997 67888999999999999999999888877654
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.2e-18 Score=184.68 Aligned_cols=107 Identities=25% Similarity=0.321 Sum_probs=66.1
Q ss_pred CCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCC
Q 008024 185 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 264 (580)
Q Consensus 185 L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 264 (580)
|+.|++++|.+++.+ ....+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++ +| .++.+++|+.|+|++|
T Consensus 443 L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCc-CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 566666666666533 2335666666666666666 455566666666666666666664 44 5666666666666666
Q ss_pred cCCCCC-hhhhcCCCCCCEEECcCCcccccCC
Q 008024 265 HLQGPI-PDQLCQLQKLAMMDLSRNKFSGSIP 295 (580)
Q Consensus 265 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p 295 (580)
.+++.. |..+..+++|+.|++++|++++..|
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 666554 6666666666666666666665433
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.6e-17 Score=179.91 Aligned_cols=181 Identities=22% Similarity=0.252 Sum_probs=84.0
Q ss_pred cccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCC
Q 008024 101 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 180 (580)
Q Consensus 101 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 180 (580)
..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.++. |++|+|++|.++ .+|..++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN-LRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT-CCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC-CCEEeCcCCcCC-ccChhhc
Confidence 33455566666666666666665 45555556666666666666666 56666666655 666666666666 4566666
Q ss_pred CCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCC-CCCEEEcccCcccccCCccccCCCCccEE
Q 008024 181 NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFL 259 (580)
Q Consensus 181 ~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 259 (580)
.+++|++|+|++|.++..+.....+++|+.|+|++|.+++.+|..+.... .+..+++++|.+++.+|.. |+.|
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 66666666666666654443333566666666666666665555553321 1123556666666655543 3344
Q ss_pred EcCCC--------cCCCCChhhhcCCCCCCEEECcCCccc
Q 008024 260 LLGGN--------HLQGPIPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 260 ~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 44444 223333333444555556666666654
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=141.06 Aligned_cols=114 Identities=27% Similarity=0.405 Sum_probs=103.0
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
+.++.|+|++|.++ .+|..+..+++|+.|+|++|+|++..+..|.++++|++|+|++|++++..|..|..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46888999999998 78899999999999999999999888889999999999999999999888889999999999999
Q ss_pred cCCcccccCCC-CCcccccCCcccCCCcCCCCcccc
Q 008024 459 SYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQ 493 (580)
Q Consensus 459 s~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~l~ 493 (580)
++|++++..+. ...+..+....+.+||+.|+|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 99999977664 355677888899999999998753
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.2e-16 Score=155.43 Aligned_cols=255 Identities=13% Similarity=0.158 Sum_probs=184.7
Q ss_pred CCCcCEEEccCCCCC--CCCCcccCCCCCCCEEEcccCCCcc----c--------CCCCcEEEcccccccCccchHHhcC
Q 008024 19 LTRLKILDISSNQLN--GSLPSVISNLTSLEYLDLSHNNFEG----E--------MKELSLLDLSRNYFSGGLSQSVVTG 84 (580)
Q Consensus 19 l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~----~--------l~~L~~L~Ls~n~~~~~~~~~~~~~ 84 (580)
+++|++|||++|++. ...+ +.++.++.+.+..|.+.. . +++|++|++.+ .++ .++...|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcc---ccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhc
Confidence 889999999999988 2222 223335556666665543 5 89999999998 777 789999999
Q ss_pred CCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCc----CCccccccccCCCccc-EEecccCcCCCCChhHHhhc--
Q 008024 85 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN----FSGKIKDGLLSSTSLQ-VLDISNNMLSGHIPHWMGNF-- 157 (580)
Q Consensus 85 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~~~~~-- 157 (580)
|++|+.|++++|.+....+..|.++.++..+.+..+. .......+|.++..|+ .+++... +.++..+...
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~ 199 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGL 199 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhccc
Confidence 9999999999999988888899998888888776632 2223345566677777 4555432 2455544422
Q ss_pred -cCCCcEEEeecCcCCCccCccC-CCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCC-
Q 008024 158 -SSELEILSMSKNHLEGNVPVQL-NNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV- 233 (580)
Q Consensus 158 -~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~- 233 (580)
+.+++.+.+.++-.. .....+ ..+++|+.+++++|.++......+ ++.+|+.+++.+| ++...+.+|..+++|+
T Consensus 200 ~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp CGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred CccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 233777777665322 111111 236788888888888887777666 7888888888887 7767777888888898
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEE
Q 008024 234 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMD 284 (580)
Q Consensus 234 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 284 (580)
.+++.+ .++...+.+|.++++|+.+++++|.++...+..|.++++|+.+.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 899888 67767778888899999999988888877777888888888875
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.3e-16 Score=139.10 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=58.7
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCeeeCcCCcccccc-chhhhCcccCCeEeCCCCeeeecCc---cccccCCcC
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIP---PQLTALNFL 453 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L 453 (580)
+++|+.|++++|.+++.+|..+..+++|+.|+|++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 355666677777666556666666777777777777776432 2567777777777777777774433 366777777
Q ss_pred CeeeCcCCcccc
Q 008024 454 SIFNVSYNNLSG 465 (580)
Q Consensus 454 ~~L~Ls~N~l~~ 465 (580)
++|++++|.+..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 777777777653
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=5.5e-15 Score=149.79 Aligned_cols=257 Identities=11% Similarity=0.155 Sum_probs=176.7
Q ss_pred CCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcc------cCCCCcEEEcccccccCccchHHhcCCCCCcEEE
Q 008024 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG------EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD 92 (580)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 92 (580)
+..++.+.+.+ .++.+...+|.+. +|+.+.+..+ ++. .-.+|+.+.+.. .++ .++...|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLE-QLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCC-EECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Ccc-EehHHHhhCcccCCeee
Confidence 35555666554 2443445555553 5666666544 221 113466666654 343 67777788889999999
Q ss_pred cccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCCh-hHHhhccCCCcEEEeecCcC
Q 008024 93 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP-HWMGNFSSELEILSMSKNHL 171 (580)
Q Consensus 93 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L~l~~n~l 171 (580)
++.|.++......|. ..+|+.+.+..+ ++.....+|.++++|+.+++..+ ++ .++ .++.. .. |+.+.+. +.+
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~-L~~i~lp-~~i 259 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SG-ITTVKLP-NGV 259 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CC-CSEEEEE-TTC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CC-ccEEEeC-CCc
Confidence 988888866666665 588999988854 66566778888889999998875 44 333 33444 44 9999984 456
Q ss_pred CCccCccCCCCCCCCEEEccCCCCC-----CccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCccccc
Q 008024 172 EGNVPVQLNNLERLRILDISENRLS-----GPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 245 (580)
Q Consensus 172 ~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (580)
+.....+|.++++|+.+++.++.+. ......+ ++++|+.+.+. +.++.....+|..|++|+.+.+..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 6566788889999999999887765 2333444 78888888887 4466666677888888888888655 6656
Q ss_pred CCccccCCCCccEEEcCCCcCCCCChhhhcCCC-CCCEEECcCCcc
Q 008024 246 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKF 290 (580)
Q Consensus 246 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l 290 (580)
...+|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 67788888 888888888887766666676663 677777766554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=136.31 Aligned_cols=87 Identities=25% Similarity=0.297 Sum_probs=53.6
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
++|+.|+|++|.+++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+++...+..|..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 34455555555555545555666666666666666666555556666666666666666666544445666666666666
Q ss_pred cCCcccc
Q 008024 459 SYNNLSG 465 (580)
Q Consensus 459 s~N~l~~ 465 (580)
++|++.+
T Consensus 134 ~~N~~~C 140 (193)
T 2wfh_A 134 GANPLYC 140 (193)
T ss_dssp CSSCEEC
T ss_pred CCCCeec
Confidence 6666654
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.1e-15 Score=132.76 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=42.0
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccc-cchhhhCcccCCeEeCCCCeeeecCc---cccccCCcCC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS-IPESFSNLKMIESLDISYNKLTGQIP---PQLTALNFLS 454 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~ 454 (580)
++|+.|++++|.+++.+|..++.+++|++|++++|.+++. .|..++.+++|++|++++|++++..+ ..+..+++|+
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 3444455555555544444444555555555555555532 22455555555555555555554333 3455555555
Q ss_pred eeeCc
Q 008024 455 IFNVS 459 (580)
Q Consensus 455 ~L~Ls 459 (580)
.|+++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 55554
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.7e-15 Score=133.20 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=97.0
Q ss_pred CCcEEEeecCcCC-CccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 008024 160 ELEILSMSKNHLE-GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 238 (580)
Q Consensus 160 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 238 (580)
+|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. .....+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 3777777777776 55666667777777777777777665 333467778888888888876667666678888888888
Q ss_pred cCcccccC-CccccCCCCccEEEcCCCcCCCCCh---hhhcCCCCCCEEECcCCccc
Q 008024 239 DNTFSGRI-PHQINEHSNLRFLLLGGNHLQGPIP---DQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 239 ~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 291 (580)
+|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88887532 2677788888888888888886544 47788888888888888876
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=3.5e-15 Score=133.71 Aligned_cols=90 Identities=22% Similarity=0.231 Sum_probs=59.4
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
++|++|++++|.+++..+..++.+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 45555666666666444445566777777777777777555556677777777777777777555545566777777777
Q ss_pred cCCcccccCC
Q 008024 459 SYNNLSGRTP 468 (580)
Q Consensus 459 s~N~l~~~~p 468 (580)
++|++++..|
T Consensus 132 ~~N~~~~~~~ 141 (177)
T 2o6r_A 132 HTNPWDCSCP 141 (177)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCeeccCc
Confidence 7777766555
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=8.6e-15 Score=131.14 Aligned_cols=114 Identities=25% Similarity=0.294 Sum_probs=74.2
Q ss_pred CCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCC
Q 008024 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 99 (580)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~ 99 (580)
++|++|++++|++++..+..|..+++|++|++++|.++ .++...+.++++|++|++++|.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ------------------SLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC------------------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce------------------EeChhHccCCCccCEEECCCCCcc
Confidence 35555555555555444444455555555555555444 555555667778888888888777
Q ss_pred CcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCCh
Q 008024 100 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP 151 (580)
Q Consensus 100 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 151 (580)
+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6666667777788888888887775555556777778888888887775544
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.9e-15 Score=129.26 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=103.3
Q ss_pred CCcEEEeecCcCC-CccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcc
Q 008024 160 ELEILSMSKNHLE-GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 238 (580)
Q Consensus 160 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 238 (580)
+++.|++++|.++ +.+|..+..+++|+.|++++|.+++. .....+++|+.|++++|.+++.+|..+..+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 3888888888887 67777788888899999998888876 444478889999999999887777777778899999999
Q ss_pred cCccccc-CCccccCCCCccEEEcCCCcCCCCCh---hhhcCCCCCCEEECcC
Q 008024 239 DNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPIP---DQLCQLQKLAMMDLSR 287 (580)
Q Consensus 239 ~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~ 287 (580)
+|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9998863 34778888999999999999886655 5788889999988864
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=3.4e-14 Score=144.53 Aligned_cols=227 Identities=11% Similarity=0.152 Sum_probs=103.7
Q ss_pred CCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCC
Q 008024 8 IGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 87 (580)
Q Consensus 8 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 87 (580)
++.+...+|.++.+|+.+.|.. .++.+...+|.++++|+.+++..+ ++ .++...|.++.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~------------------~I~~~aF~~c~~ 118 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK------------------MIGRCTFSGCYA 118 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC------------------EECTTTTTTCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce------------------Eccchhhccccc
Confidence 3444555667777777777754 355455566777777777666543 22 344555556666
Q ss_pred CcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEee
Q 008024 88 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 167 (580)
Q Consensus 88 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 167 (580)
|+.+.+..+ +......+|.++..++...... +......+|.++++|+.+.+..+... .-...+..... |+.+.+.
T Consensus 119 L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~-L~~i~l~ 193 (394)
T 4fs7_A 119 LKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGK-LKSIKLP 193 (394)
T ss_dssp CCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTT-CCBCCCC
T ss_pred chhhcccCc-eeeecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccce-eccccccCCCC-ceEEEcC
Confidence 665555433 3323334444443322222221 11122345555666666655443221 11222333333 5555554
Q ss_pred cCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCC
Q 008024 168 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 247 (580)
Q Consensus 168 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (580)
.+ ++.....+|.++..|+.+.+..+... .....+...+|+.+.+... ++......+..+..++.+.+..+... ...
T Consensus 194 ~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~ 269 (394)
T 4fs7_A 194 RN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGG 269 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred CC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eec
Confidence 43 33233444555555555554443211 1112223344555544322 22222334444455555555444322 333
Q ss_pred ccccCCCCccEEEcCC
Q 008024 248 HQINEHSNLRFLLLGG 263 (580)
Q Consensus 248 ~~~~~~~~L~~L~L~~ 263 (580)
..|..+..++.+....
T Consensus 270 ~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CTTTTCTTCCEEEECS
T ss_pred cccccccccceeccCc
Confidence 4444445555444443
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1e-13 Score=140.49 Aligned_cols=214 Identities=13% Similarity=0.176 Sum_probs=116.2
Q ss_pred CCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEE
Q 008024 60 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 139 (580)
Q Consensus 60 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 139 (580)
+..++.+.+..+ ++ .++...|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.+ .++...+.+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 355555555543 33 4566666664 6777777665 555555666663 577777765 4554555677777777777
Q ss_pred ecccCcCCCCChhHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCC
Q 008024 140 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 219 (580)
Q Consensus 140 ~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 219 (580)
++..|.++ .++........ |+.+.+..+ ++.....+|.++++|+.+++..+ ++......+.-.+|+.+.+. +.++
T Consensus 186 ~l~~n~l~-~I~~~aF~~~~-L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFVYAG-IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCS-EECTTTTTTCC-CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC
T ss_pred ecCCCcce-EechhhEeecc-cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc
Confidence 77777776 44444333443 777777643 55455566777777777777653 33333344433555555552 3344
Q ss_pred CCCcccccCCCCCCEEEcccCccc-----ccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEEC
Q 008024 220 GLIPGELFRSCKLVTLNLRDNTFS-----GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL 285 (580)
Q Consensus 220 ~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 285 (580)
.....+|..|++|+.+++.+|.+. ...+..|.+|++|+.+++. +.++......|.+|++|+.+++
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 344445555555555555554443 2233344444444444444 2233233333444444444443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.3e-14 Score=129.84 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=68.9
Q ss_pred ccccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccch--hhhCcccCCeEeCCCCeeeecCccc----cccC
Q 008024 377 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE--SFSNLKMIESLDISYNKLTGQIPPQ----LTAL 450 (580)
Q Consensus 377 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~~----l~~l 450 (580)
.+++|+.|++++|.+++..+..+..+++|+.|+|++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+
T Consensus 62 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l 139 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV 139 (176)
T ss_dssp CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC
T ss_pred cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC
Confidence 3467788888888888554455588888999999999886 5665 7888889999999999888 56664 8888
Q ss_pred CcCCeeeCcCCcccc
Q 008024 451 NFLSIFNVSYNNLSG 465 (580)
Q Consensus 451 ~~L~~L~Ls~N~l~~ 465 (580)
++|++||+++|....
T Consensus 140 ~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 140 PQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCSEETTEECCHHH
T ss_pred CccceeCCCcCCHHH
Confidence 899999998888754
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.8e-16 Score=144.93 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=49.9
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccc-hhhhCcccCCeEeCCCCeeeecCccc----------c
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ----------L 447 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------l 447 (580)
++|+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 456667777777664 33 46666777777777777663222 35666777777777777776555442 5
Q ss_pred ccCCcCCeeeCcCCcc
Q 008024 448 TALNFLSIFNVSYNNL 463 (580)
Q Consensus 448 ~~l~~L~~L~Ls~N~l 463 (580)
..+++|++|| +|.+
T Consensus 171 ~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHCSSCSEEC--CGGG
T ss_pred HhCCCcEEEC--Cccc
Confidence 6666666665 4444
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.6e-14 Score=127.85 Aligned_cols=127 Identities=18% Similarity=0.228 Sum_probs=69.1
Q ss_pred hccCCCCCcCEEEccCCCCCCCCCcccCCC-CCCCEEEcccCCCcc-----cCCCCcEEEcccccccCccchHHhcCCCC
Q 008024 14 TCLKNLTRLKILDISSNQLNGSLPSVISNL-TSLEYLDLSHNNFEG-----EMKELSLLDLSRNYFSGGLSQSVVTGCFS 87 (580)
Q Consensus 14 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~-----~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 87 (580)
..+.++.+|++|++++|.++. +|. +..+ ++|++|++++|.+++ .+++|++|++++|.++ .+|..++..+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 356788899999999999984 454 4444 488999888888773 3444444444444444 333333344444
Q ss_pred CcEEEcccCcCCCcccc--cccCCCCCCEEEccCCcCCccccc----cccCCCcccEEecccCc
Q 008024 88 LELLDLSNNNFEGQFFS--EYMNLTRLRHLYFENNNFSGKIKD----GLLSSTSLQVLDISNNM 145 (580)
Q Consensus 88 L~~L~ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~ 145 (580)
|++|++++|.++. +|. .+..+++|++|++++|.++ ..|. .+..+++|+.||++.|.
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 4444444444432 222 3444444444444444443 2222 13444444444444443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=4.3e-14 Score=125.44 Aligned_cols=108 Identities=23% Similarity=0.278 Sum_probs=79.7
Q ss_pred ccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcC
Q 008024 381 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY 460 (580)
Q Consensus 381 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~ 460 (580)
.+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456788888777 5666553 6778888888888777677788888888888888888866666677788888888888
Q ss_pred CcccccCCC-CCcccccCCcccCCCcCCCCcc
Q 008024 461 NNLSGRTPD-KGQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 461 N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~ 491 (580)
|++++..|. ...+..++...+.+||+.|.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888776664 3556667777777888887764
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=9e-14 Score=123.75 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=73.7
Q ss_pred cEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCC
Q 008024 382 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 461 (580)
Q Consensus 382 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 461 (580)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45777777775 5666553 67777777777777666777777777777777777777655555677777777777777
Q ss_pred cccccCCC-CCcccccCCcccCCCcCCCCcc
Q 008024 462 NLSGRTPD-KGQFATFDESSYRGNPSLCAWL 491 (580)
Q Consensus 462 ~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~ 491 (580)
++++.+|. ...+..+....+.+|++.|.|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 77765554 3455666666777777777654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.3e-13 Score=122.29 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=84.3
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
+.++.|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 56788999999999888999999999999999999999777778999999999999999999877778999999999999
Q ss_pred cCCcccccCCCC
Q 008024 459 SYNNLSGRTPDK 470 (580)
Q Consensus 459 s~N~l~~~~p~~ 470 (580)
++|++++..+..
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999998876643
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=9.7e-13 Score=133.74 Aligned_cols=315 Identities=8% Similarity=0.039 Sum_probs=159.3
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHh
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 155 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 155 (580)
.+....|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.....+|.++.+|+.+.+..+ +.......+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 344444555555555555432 44344445555555555555433 33233344555555555444332 1101111222
Q ss_pred hccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCc-CCCCccEEEcccCCCCCCCcccccCCCCCCE
Q 008024 156 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVT 234 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 234 (580)
... +....+.. ........+|.++++|+.+.+..+. .......+ ++.+|+.+.+..+ ++.....++..+..|+.
T Consensus 138 ~~~--~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 138 GCD--FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TCC--CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ccc--ccccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 211 22222211 1111233455666666666665432 22222333 4556666666544 33334445556666666
Q ss_pred EEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccc
Q 008024 235 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG 314 (580)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~ 314 (580)
+.+..+... +........+|+.+.+.... +......+..+..|+.+.+..+... .....|..+..+.......
T Consensus 213 i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~--- 285 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS--- 285 (394)
T ss_dssp CCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS---
T ss_pred eecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCc---
Confidence 655554332 12222334556666654332 2233344556666666666554322 2222333222111100000
Q ss_pred cCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCccc
Q 008024 315 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 394 (580)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 394 (580)
..........+.+|+.+.+..+ ++..
T Consensus 286 -----------------------------------------------------~~i~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 286 -----------------------------------------------------VIVPEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp -----------------------------------------------------SEECTTTTTTCTTCCEEEECTT-CCEE
T ss_pred -----------------------------------------------------eeeccccccccccccccccccc-ccee
Confidence 0000001134567777887654 5544
Q ss_pred CChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCC
Q 008024 395 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 461 (580)
Q Consensus 395 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 461 (580)
-...|.++++|+.++|..+ ++.....+|.++++|+.+++..+ ++.....+|.++++|+.+++..+
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 4567888899999999754 66566778999999999999877 66666778999999999988654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=3.7e-13 Score=119.79 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=82.4
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
+.|+.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|.++++|++|||++|+|++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 57888999999999888999999999999999999999766677899999999999999999766667999999999999
Q ss_pred cCCcccccCCC
Q 008024 459 SYNNLSGRTPD 469 (580)
Q Consensus 459 s~N~l~~~~p~ 469 (580)
++|++....+.
T Consensus 113 ~~N~~~c~~~~ 123 (174)
T 2r9u_A 113 YNNPWDCECRD 123 (174)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCccccccc
Confidence 99999876554
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.9e-15 Score=138.03 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=34.0
Q ss_pred CCCCcEEEcccCcCCCcccc------cccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhcc
Q 008024 85 CFSLELLDLSNNNFEGQFFS------EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS 158 (580)
Q Consensus 85 l~~L~~L~ls~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 158 (580)
...++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 33444444444444443332 34444444444444444432 22 3333444444444444443 3333333333
Q ss_pred CCCcEEEeecCcCC
Q 008024 159 SELEILSMSKNHLE 172 (580)
Q Consensus 159 ~~L~~L~l~~n~l~ 172 (580)
. |+.|++++|+++
T Consensus 94 ~-L~~L~L~~N~l~ 106 (198)
T 1ds9_A 94 T-LEELWISYNQIA 106 (198)
T ss_dssp H-CSEEEEEEEECC
T ss_pred c-CCEEECcCCcCC
Confidence 3 444444444333
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=1.6e-11 Score=124.68 Aligned_cols=338 Identities=9% Similarity=0.066 Sum_probs=184.2
Q ss_pred CCchhhccCCCC-CcCEEEccCCCCCCCCCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccchHHhcCCCC
Q 008024 9 GSPLITCLKNLT-RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 87 (580)
Q Consensus 9 ~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 87 (580)
+.+...+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..|.-. . ++ .+....|.++.+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~----~----------l~-~Ig~~aF~~c~~ 115 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPS----C----------VK-KIGRQAFMFCSE 115 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCC----C----------CC-EECTTTTTTCTT
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCC----e----------ee-Eechhhchhccc
Confidence 344556777774 5888888754 66566777888888888887765311 0 11 456666777777
Q ss_pred CcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHhhccCCCcEEEee
Q 008024 88 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 167 (580)
Q Consensus 88 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 167 (580)
|+.+.+..+ ++......|.++.+|+.+.+..+ +......+|..+.+|+.+.+..+ ++ .+......... |+.+.+.
T Consensus 116 L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~-l~~i~ip 190 (394)
T 4gt6_A 116 LTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTA-LTQIHIP 190 (394)
T ss_dssp CCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCC-CSEEEEC
T ss_pred ceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccccc-eeEEEEC
Confidence 777776544 44455567777888888888654 33345566777788888877654 22 22222222333 7777776
Q ss_pred cCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEEEcccCcccccCC
Q 008024 168 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 247 (580)
Q Consensus 168 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (580)
.+-.. ....++..+..++......+.........+. .+.........+.....+..+.+.. .+.....
T Consensus 191 ~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~ 258 (394)
T 4gt6_A 191 AKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYE----------KSANGDYALIRYPSQREDPAFKIPN-GVARIET 258 (394)
T ss_dssp TTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEE----------ECTTSCEEEEECCTTCCCSEEECCT-TEEEECT
T ss_pred Ccccc-cccchhhhccccceecccccccccccceeec----------ccccccccccccccccccceEEcCC-cceEccc
Confidence 55333 4556677777777776655443321111110 0000000000111122334444432 2333444
Q ss_pred ccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCcccccCCCCccccchhc
Q 008024 248 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE 327 (580)
Q Consensus 248 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (580)
..|..+..|+.+.+..+... .....|..++.|+.+.+.. .++.....+|
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF----------------------------- 307 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVF----------------------------- 307 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTT-----------------------------
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceee-----------------------------
Confidence 56666777777776554332 4445566667777776642 2321111122
Q ss_pred cCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccCChhhhccccCCe
Q 008024 328 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA 407 (580)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 407 (580)
..+.+|+.+++..+ ++..-...|.++.+|+.
T Consensus 308 ------------------------------------------------~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 308 ------------------------------------------------AGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp ------------------------------------------------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ------------------------------------------------cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 23455666666543 44334456777777888
Q ss_pred eeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCCcc
Q 008024 408 LNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 463 (580)
Q Consensus 408 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 463 (580)
+.+..+ ++.....+|.++++|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 777644 554556678888888888887775442 3556666777776665543
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=9.6e-13 Score=131.45 Aligned_cols=108 Identities=21% Similarity=0.248 Sum_probs=89.4
Q ss_pred EEEccCC-cCcccCChhhhccccCCeeeCcC-CccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcC
Q 008024 383 GLDLSCN-QLTGEIPSDIGQLQAILALNLSN-NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY 460 (580)
Q Consensus 383 ~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~ 460 (580)
.++++++ +++ .+|. +..+++|+.|+|++ |.|++..|..|+++++|+.|||++|+|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4788887 887 5787 88888999999986 899877778899999999999999999988888889999999999999
Q ss_pred CcccccCCCCCcccccCCcccCCCcCCCCccc
Q 008024 461 NNLSGRTPDKGQFATFDESSYRGNPSLCAWLI 492 (580)
Q Consensus 461 N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~l 492 (580)
|+|++.+|.......+....+.+|++.|+|.+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence 99987776644333477778889999988763
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=8.4e-14 Score=139.66 Aligned_cols=154 Identities=17% Similarity=0.194 Sum_probs=90.0
Q ss_pred CCCCEEEcccCCCcc------------cCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCCcccccc-----
Q 008024 44 TSLEYLDLSHNNFEG------------EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEY----- 106 (580)
Q Consensus 44 ~~L~~L~L~~n~l~~------------~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~----- 106 (580)
++|++|+|++|.++. ..++|++|+|++|.++......++..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555543 124566666666665543333444445567777777777664433333
Q ss_pred cCCCCCCEEEccCCcCCc----cccccccCCCcccEEecccCcCCCCC----hhHHhhccCCCcEEEeecCcCCCc----
Q 008024 107 MNLTRLRHLYFENNNFSG----KIKDGLLSSTSLQVLDISNNMLSGHI----PHWMGNFSSELEILSMSKNHLEGN---- 174 (580)
Q Consensus 107 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~----p~~~~~~~~~L~~L~l~~n~l~~~---- 174 (580)
...++|++|+|++|.++. .++..+..+++|++|++++|.+++.. +..+...+. |++|++++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~-L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-LQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC-CCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC-cCeEECCCCCCCHHHHHH
Confidence 235667777777777653 23344466777777777777766322 333444444 77777777777643
Q ss_pred cCccCCCCCCCCEEEccCCCCCCc
Q 008024 175 VPVQLNNLERLRILDISENRLSGP 198 (580)
Q Consensus 175 ~~~~~~~l~~L~~L~ls~n~l~~~ 198 (580)
+...+...++|++|++++|.++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 223344557788888888877653
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=3.6e-13 Score=135.10 Aligned_cols=185 Identities=22% Similarity=0.214 Sum_probs=131.3
Q ss_pred CCCCCCEEEcccCCCc--------ccCCCCcEEEcccccccCccchHH----hcCCCCCcEEEcccCcCCCcccccc-cC
Q 008024 42 NLTSLEYLDLSHNNFE--------GEMKELSLLDLSRNYFSGGLSQSV----VTGCFSLELLDLSNNNFEGQFFSEY-MN 108 (580)
Q Consensus 42 ~l~~L~~L~L~~n~l~--------~~l~~L~~L~Ls~n~~~~~~~~~~----~~~l~~L~~L~ls~n~i~~~~~~~~-~~ 108 (580)
.++..+.+++.+|-.. ..++.|++|++++|.++......+ ....++|++|+|++|.++......+ ..
T Consensus 45 ~~~~~~~lnl~~cl~e~~~~~l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 124 (372)
T 3un9_A 45 VLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124 (372)
T ss_dssp CSCHHHHHHHHHHHHHHHTHHHHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH
T ss_pred CCChhhhHHHHHHHHHhcCHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH
Confidence 3444455666554221 156889999999999984333222 1233699999999999975444333 24
Q ss_pred CCCCCEEEccCCcCCccccccc-----cCCCcccEEecccCcCCCC----ChhHHhhccCCCcEEEeecCcCCCc----c
Q 008024 109 LTRLRHLYFENNNFSGKIKDGL-----LSSTSLQVLDISNNMLSGH----IPHWMGNFSSELEILSMSKNHLEGN----V 175 (580)
Q Consensus 109 l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~~L~~L~l~~n~l~~~----~ 175 (580)
+++|++|+|++|.++......+ ...++|++|++++|.+++. ++..+...+. |++|+|++|.+++. +
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHH
Confidence 5789999999999985444443 3568999999999998742 3344455666 99999999999753 2
Q ss_pred CccCCCCCCCCEEEccCCCCCCccccCc-----CCCCccEEEcccCCCCCCCccccc
Q 008024 176 PVQLNNLERLRILDISENRLSGPIASSL-----NLSSVEHLSLQKNALNGLIPGELF 227 (580)
Q Consensus 176 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~ 227 (580)
+..+...++|+.|++++|.++......+ ..++|++|++++|.+++.....+.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 4566778899999999999976433222 568999999999999865444443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=1.7e-09 Score=109.69 Aligned_cols=300 Identities=8% Similarity=0.103 Sum_probs=174.0
Q ss_pred ccchHHhcCCC-CCcEEEcccCcCCCcccccccCCCCCCEEEccCCc---CCccccccccCCCcccEEecccCcCCCCCh
Q 008024 76 GLSQSVVTGCF-SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN---FSGKIKDGLLSSTSLQVLDISNNMLSGHIP 151 (580)
Q Consensus 76 ~~~~~~~~~l~-~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 151 (580)
.+....|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++.....+|..+.+|+.+.+..+ ++..-.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 45556666664 4777777654 555666677777777777776653 44344566777777777666544 221222
Q ss_pred hHHhhccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCC
Q 008024 152 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK 231 (580)
Q Consensus 152 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 231 (580)
..+..... |+.+.+..+ +.......|..+..|+.+.+..+ +.......+....|+.+.+..+-. .....++..+.+
T Consensus 131 ~aF~~c~~-L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEE-LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTT
T ss_pred hhhhhhcc-cccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccc
Confidence 33344444 777777543 23244556677777777777654 333444444445677776654432 234455666666
Q ss_pred CCEEEcccCcccccCCcccc-------------CCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhh
Q 008024 232 LVTLNLRDNTFSGRIPHQIN-------------EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 298 (580)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~-------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 298 (580)
++......+.........+. ....+..+.+.. .++......|..+..|+.+.+.++..+ .....
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a- 283 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGA- 283 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT-
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcc-
Confidence 66665554433211100010 111222222221 111122334555555555555332211 11111
Q ss_pred hcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeeccccc
Q 008024 299 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNV 378 (580)
Q Consensus 299 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 378 (580)
...+
T Consensus 284 ----------------------------------------------------------------------------F~~c 287 (394)
T 4gt6_A 284 ----------------------------------------------------------------------------FMNC 287 (394)
T ss_dssp ----------------------------------------------------------------------------TTTC
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 1345
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeC
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 458 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 458 (580)
+.|+.+++. +.++..-...|.++.+|+.++|..+ ++.....+|.++++|+.+.|..+ ++..-..+|.++++|+.+++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 677778885 4455455567889999999999865 66566778999999999999765 66566778999999999999
Q ss_pred cCCcc
Q 008024 459 SYNNL 463 (580)
Q Consensus 459 s~N~l 463 (580)
.+|..
T Consensus 365 ~~~~~ 369 (394)
T 4gt6_A 365 SGSRS 369 (394)
T ss_dssp SSCHH
T ss_pred CCcee
Confidence 88764
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.5e-10 Score=115.43 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=79.1
Q ss_pred CEEEccCC-CCCCCCCcccCCCCCCCEEEccc-CCCcccCCCCcEEEcccccccCccchHHhcCCCCCcEEEcccCcCCC
Q 008024 23 KILDISSN-QLNGSLPSVISNLTSLEYLDLSH-NNFEGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG 100 (580)
Q Consensus 23 ~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ls~n~i~~ 100 (580)
..++++++ +++ .+|. +..+++|++|+|++ |.++ .++...|.++++|++|+|++|.|++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~------------------~~~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ------------------HLELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC------------------EECGGGSCSCCCCSEEECCSSCCCE
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC------------------CcChhHhccccCCCEEECCCCccce
Confidence 35678877 777 4666 88888888888775 7766 5666666778888888888888888
Q ss_pred cccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCC
Q 008024 101 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 148 (580)
Q Consensus 101 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 148 (580)
..|..|.++++|++|+|++|++++..+..+..++ |+.|++.+|.+..
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777888888888888888888855555555554 8888888888773
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=3.8e-08 Score=99.21 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=44.7
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCC
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 451 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 451 (580)
+.+|+.+++.++.++..-...|.++.+|+.+.|..+ ++.....+|.++++|+.+.+..+ ++..-..+|.+.+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 445666666666665444556677777777777644 55445566777777777777654 5544455665554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=6.4e-08 Score=97.50 Aligned_cols=285 Identities=9% Similarity=0.057 Sum_probs=172.2
Q ss_pred ccchHHhcCCCCCcEEEcccCcCCCcccccccCCCCCCEEEccCCcCCccccccccCCCcccEEecccCcCCCCChhHHh
Q 008024 76 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 155 (580)
Q Consensus 76 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 155 (580)
.++...|.+|.+|+.+++..+ ++.....+|.++ +|+.+.+..+ ++.....+|.. .+|+.+++..+-. .+.....
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~~~--~i~~~~F 132 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGATT--EIGNYIF 132 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTTCC--EECTTTT
T ss_pred ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCccc--ccccccc
Confidence 567777888888888888654 555556667665 5777766543 44233344443 4677777765422 1222222
Q ss_pred hccCCCcEEEeecCcCCCccCccCCCCCCCCEEEccCCCCCCccccCcCCCCccEEEcccCCCCCCCcccccCCCCCCEE
Q 008024 156 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 235 (580)
Q Consensus 156 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 235 (580)
.... ++.+.+..+ ++......+..+..++.+.+..+........... .+.. ......+..+..+..+
T Consensus 133 ~~~~-l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~ 199 (379)
T 4h09_A 133 YNSS-VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL----------YNKN-KTILESYPAAKTGTEF 199 (379)
T ss_dssp TTCC-CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE----------EETT-SSEEEECCTTCCCSEE
T ss_pred ccce-eeeeeccce-eeccccchhcccccccccccccccceeeccccee----------cccc-cceecccccccccccc
Confidence 2223 666655543 3334445566677777776655432211111100 0000 1222334445566666
Q ss_pred EcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhcCCCCCCEEECcCCcccccCChhhhcccccccccCCccccc
Q 008024 236 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS 315 (580)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 315 (580)
.+...... .....+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....+|
T Consensus 200 ~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF----------------- 259 (379)
T 4h09_A 200 TIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL----------------- 259 (379)
T ss_dssp ECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT-----------------
T ss_pred ccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc-----------------
Confidence 65544322 44556677788888887654 33345566778888888887654 332222222
Q ss_pred CCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccccccccEEEccCCcCcccC
Q 008024 316 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI 395 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 395 (580)
..+..|+.+.+..+ +....
T Consensus 260 ------------------------------------------------------------~~~~~l~~i~l~~~-i~~i~ 278 (379)
T 4h09_A 260 ------------------------------------------------------------QNCTALKTLNFYAK-VKTVP 278 (379)
T ss_dssp ------------------------------------------------------------TTCTTCCEEEECCC-CSEEC
T ss_pred ------------------------------------------------------------ceeehhcccccccc-ceecc
Confidence 22345666666543 44344
Q ss_pred ChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCC
Q 008024 396 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 461 (580)
Q Consensus 396 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 461 (580)
...|.++++|+.+.+.++.++.....+|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 557889999999999999998667788999999999999866 66566778999999999987544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=8.2e-10 Score=109.66 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=102.3
Q ss_pred CcccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcCCCcCCCCChhhhc--CCCCCCEEECcCC--cccccCChh
Q 008024 222 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC--QLQKLAMMDLSRN--KFSGSIPPC 297 (580)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~N--~l~~~~p~~ 297 (580)
+...+..+++|+.|++++|.-. .++. + .+++|++|++..+.+.......++ .+++|+.|+|+.+ ...+.. .
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~ 238 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--D 238 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--C
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--h
Confidence 3345566778888888877311 2332 3 378899999988887644444444 6889999988532 211100 0
Q ss_pred hhcccccccccCCcccccCCCCccccchhccCCCCCCCCCccccchhhhhhhhhhhhccccchhheeeccccceeecccc
Q 008024 298 FANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSN 377 (580)
Q Consensus 298 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (580)
+..+. ..+....
T Consensus 239 ~~~l~--------------------------------------------------------------------~~l~~~~ 250 (362)
T 2ra8_A 239 MNVFR--------------------------------------------------------------------PLFSKDR 250 (362)
T ss_dssp GGGTG--------------------------------------------------------------------GGSCTTT
T ss_pred HHHHH--------------------------------------------------------------------HHHhcCC
Confidence 00000 0001124
Q ss_pred cccccEEEccCCcCcccCChhhh---ccccCCeeeCcCCcccccc----chhhhCcccCCeEeCCCCeeeecCcccccc-
Q 008024 378 VNRVTGLDLSCNQLTGEIPSDIG---QLQAILALNLSNNSLSGSI----PESFSNLKMIESLDISYNKLTGQIPPQLTA- 449 (580)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~- 449 (580)
+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 67899999999888754444443 4788999999999888643 344456788999999999887544444443
Q ss_pred CCcCCeeeCcCCc
Q 008024 450 LNFLSIFNVSYNN 462 (580)
Q Consensus 450 l~~L~~L~Ls~N~ 462 (580)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456776665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.1e-09 Score=108.72 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=41.0
Q ss_pred hccCCCCCcCEEEccCCCCC---------CCCCcccCCCCCCCEEEcccCC-Ccc---cCCCCcEEEcccccccCccchH
Q 008024 14 TCLKNLTRLKILDISSNQLN---------GSLPSVISNLTSLEYLDLSHNN-FEG---EMKELSLLDLSRNYFSGGLSQS 80 (580)
Q Consensus 14 ~~~~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~L~~n~-l~~---~l~~L~~L~Ls~n~~~~~~~~~ 80 (580)
++..++++|+.|.+...... +.+...+..+|+|+.|+|++|. +.- .+++|++|++..+.+.......
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHH
Confidence 34556778888887654321 1233444566777777776662 110 2445555555555544222222
Q ss_pred Hh-cCCCCCcEEEcc
Q 008024 81 VV-TGCFSLELLDLS 94 (580)
Q Consensus 81 ~~-~~l~~L~~L~ls 94 (580)
+. ..+++|++|+|+
T Consensus 213 l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHSBCTTCCEEEEE
T ss_pred HHHccCCCCcEEEEe
Confidence 21 135555555553
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=1.8e-08 Score=90.16 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=21.5
Q ss_pred cccCCCCccEEEcCCC-cCCCC----ChhhhcCCCCCCEEECcCCccc
Q 008024 249 QINEHSNLRFLLLGGN-HLQGP----IPDQLCQLQKLAMMDLSRNKFS 291 (580)
Q Consensus 249 ~~~~~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 291 (580)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3444555666666665 55421 2223344455555555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=2.3e-08 Score=89.45 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=66.6
Q ss_pred ccCCCCCcCEEEccCC-CCCCC----CCcccCCCCCCCEEEcccCCCcccCCCCcEEEcccccccCccch---HHhcCCC
Q 008024 15 CLKNLTRLKILDISSN-QLNGS----LPSVISNLTSLEYLDLSHNNFEGEMKELSLLDLSRNYFSGGLSQ---SVVTGCF 86 (580)
Q Consensus 15 ~~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~~L~~L~Ls~n~~~~~~~~---~~~~~l~ 86 (580)
.+...++|++|+|++| .+... +.+.+...++|++|+|++|.+. ..... ..+...+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~-----------------~~g~~~l~~~L~~n~ 93 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN-----------------DPVAFALAEMLKVNN 93 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC-----------------HHHHHHHHHHHHHCS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC-----------------hHHHHHHHHHHHhCC
Confidence 4445555666666655 55422 2233444455555555555544 21111 1123345
Q ss_pred CCcEEEcccCcCCCc----ccccccCCCCCCEEEc--cCCcCCcc----ccccccCCCcccEEecccCcCC
Q 008024 87 SLELLDLSNNNFEGQ----FFSEYMNLTRLRHLYF--ENNNFSGK----IKDGLLSSTSLQVLDISNNMLS 147 (580)
Q Consensus 87 ~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~ 147 (580)
+|++|+|++|.|... +...+...++|++|+| ++|.++.. +...+...++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 677777777777643 3445566677888888 77777643 3345556678888888888765
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=1.2e-07 Score=89.07 Aligned_cols=67 Identities=24% Similarity=0.305 Sum_probs=36.3
Q ss_pred hccccCCeeeCcCCcccc--ccchhhhCcccCCeEeCCCCeeeecCccccccCC--cCCeeeCcCCcccccCC
Q 008024 400 GQLQAILALNLSNNSLSG--SIPESFSNLKMIESLDISYNKLTGQIPPQLTALN--FLSIFNVSYNNLSGRTP 468 (580)
Q Consensus 400 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p 468 (580)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. .|+.|+|++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345556666666666654 2334455566666666666666543 2233333 56666666666665554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=1.2e-07 Score=89.15 Aligned_cols=79 Identities=24% Similarity=0.297 Sum_probs=60.1
Q ss_pred ccccccEEEccCCcCcc--cCChhhhccccCCeeeCcCCccccccchhhhCcc--cCCeEeCCCCeeeecCcc-------
Q 008024 377 NVNRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLK--MIESLDISYNKLTGQIPP------- 445 (580)
Q Consensus 377 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~~~~p~------- 445 (580)
.+++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+++.+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46788899999998887 4567777888999999999988854 3344444 888999999988876663
Q ss_pred ccccCCcCCeee
Q 008024 446 QLTALNFLSIFN 457 (580)
Q Consensus 446 ~l~~l~~L~~L~ 457 (580)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356778888776
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=5e-07 Score=78.68 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=71.5
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCeeeCcCCc-cccccchhhhCc----ccCCeEeCCCCe-eeecCccccccCCc
Q 008024 379 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNL----KMIESLDISYNK-LTGQIPPQLTALNF 452 (580)
Q Consensus 379 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~LdLs~N~-l~~~~p~~l~~l~~ 452 (580)
..|+.||++++.++..--..+..+++|++|+|++|. +++..-..++.+ ++|++|||++|. +|..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999987766778899999999999995 887666677775 489999999985 88766667888999
Q ss_pred CCeeeCcCCc
Q 008024 453 LSIFNVSYNN 462 (580)
Q Consensus 453 L~~L~Ls~N~ 462 (580)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=5.9e-06 Score=71.88 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=15.0
Q ss_pred CcEEEeecCc-CCCccCccCCCCCCCCEEEccCC
Q 008024 161 LEILSMSKNH-LEGNVPVQLNNLERLRILDISEN 193 (580)
Q Consensus 161 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n 193 (580)
|+.|++++|. +++..-..+..+++|+.|+++++
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 4444444442 44333333444455555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=2.7e-05 Score=69.06 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=36.6
Q ss_pred CCCCcEEEcccCcCCCcc----cccccCCCCCCEEEccCC---cCCc----cccccccCCCcccEEecccCcC
Q 008024 85 CFSLELLDLSNNNFEGQF----FSEYMNLTRLRHLYFENN---NFSG----KIKDGLLSSTSLQVLDISNNML 146 (580)
Q Consensus 85 l~~L~~L~ls~n~i~~~~----~~~~~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~l 146 (580)
-..|++|+|++|.|.... .+.+..-+.|++|+|++| .+.. .+.+.+..-++|+.|+++.|.+
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 356666666666665322 234455566777777654 3332 2344556667788888876654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.35 E-value=0.00024 Score=62.95 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=50.5
Q ss_pred CCCCCcEEEcccCcCCCc----ccccccCCCCCCEEEccCCcCCcc----ccccccCCCcccEEecccCc---CCCC---
Q 008024 84 GCFSLELLDLSNNNFEGQ----FFSEYMNLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNM---LSGH--- 149 (580)
Q Consensus 84 ~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~---l~~~--- 149 (580)
.-..|+.|+|++|.|... +...+..-+.|++|+|++|.|... +.+++...+.|++|++++|. +...
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 345677777777766532 223344557788888888877632 33455566678888877543 2211
Q ss_pred -ChhHHhhccCCCcEEEeecCcC
Q 008024 150 -IPHWMGNFSSELEILSMSKNHL 171 (580)
Q Consensus 150 -~p~~~~~~~~~L~~L~l~~n~l 171 (580)
+.+.+...+. |+.|+++.|.+
T Consensus 148 ~ia~aL~~N~t-L~~L~l~~~~~ 169 (197)
T 1pgv_A 148 DMMMAIEENES-LLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHCSS-CCEEECCCCCH
T ss_pred HHHHHHHhCCC-cCeEeccCCCc
Confidence 2233444444 77777776543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.00093 Score=55.23 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=40.1
Q ss_pred EEEccCCcCc-ccCChhhhccccCCeeeCcCCccccccchhhhCcccCCeEeCCCCeee
Q 008024 383 GLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 440 (580)
Q Consensus 383 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 440 (580)
.++.++++++ ..+|..+. ++|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5788888876 35664432 35788888888888655666777888888888888765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.86 E-value=0.0011 Score=54.73 Aligned_cols=54 Identities=26% Similarity=0.307 Sum_probs=35.9
Q ss_pred CeeeCcCCccc-cccchhhhCcccCCeEeCCCCeeeecCccccccCCcCCeeeCcCC
Q 008024 406 LALNLSNNSLS-GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 461 (580)
Q Consensus 406 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 461 (580)
..++.+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 36777888775 34554332 36788888888888666666777777777655433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.56 E-value=4.4 Score=31.01 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=42.0
Q ss_pred CCCCCCCchhhccCCCCCcCEEEccCCCCCCCCCcccCCCCCCCEEEcccC
Q 008024 4 ERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 54 (580)
Q Consensus 4 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 54 (580)
.+..++.+...+|.++++|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 355788888899999999999999875 55577789999999999998764
No 166
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=72.46 E-value=4.2 Score=24.70 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=10.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHhh
Q 008024 530 YSSFGASYVTVILVLIAILWIN 551 (580)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~ 551 (580)
+.+++++.++++.+++++.+|+
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHH
Confidence 3444555555544444444443
No 167
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=55.02 E-value=14 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=11.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHhhc
Q 008024 530 YSSFGASYVTVILVLIAILWINS 552 (580)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~ 552 (580)
.+.+.+|.++++...-..+++++
T Consensus 9 alt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEc
Confidence 34445555555544444444443
No 168
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=45.82 E-value=19 Score=22.02 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=3.4
Q ss_pred hHHhHHHHH
Q 008024 530 YSSFGASYV 538 (580)
Q Consensus 530 ~~~~~~~~~ 538 (580)
..+++.+++
T Consensus 16 ~~~vv~Gv~ 24 (41)
T 2k9y_A 16 IGGVAVGVV 24 (41)
T ss_dssp HHHHHHHHH
T ss_pred EeehhHHHH
Confidence 333333433
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.08 E-value=33 Score=25.99 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=17.9
Q ss_pred cccccCCCCCCEEEcccCcccccCCccccCCCCccEEEcC
Q 008024 223 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 262 (580)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 262 (580)
..+|..|.+|+.+.+-.+ ++.+....|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344444555555555443 222333445555555555443
Done!