Query 008025
Match_columns 580
No_of_seqs 449 out of 3181
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 18:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02722 indole-3-acetamide am 100.0 6.2E-87 1.4E-91 684.8 38.1 406 29-439 2-420 (422)
2 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 5.7E-87 1.2E-91 690.0 35.7 417 9-443 5-469 (475)
3 PRK09201 amidase; Provisional 100.0 2.7E-85 5.8E-90 685.5 34.9 410 9-440 5-454 (465)
4 TIGR02715 amido_AtzE amidohydr 100.0 4.4E-85 9.5E-90 682.3 34.5 406 13-440 2-447 (452)
5 PRK05962 amidase; Validated 100.0 1.5E-84 3.2E-89 672.0 35.3 397 28-442 9-422 (424)
6 PRK07487 amidase; Provisional 100.0 2E-84 4.4E-89 679.6 35.2 417 7-442 4-458 (469)
7 PRK06102 hypothetical protein; 100.0 2.3E-84 5.1E-89 676.0 34.4 413 11-442 6-450 (452)
8 PRK08310 amidase; Provisional 100.0 1.2E-83 2.7E-88 659.0 38.4 387 32-440 5-393 (395)
9 PRK06169 putative amidase; Pro 100.0 3.5E-84 7.7E-89 678.0 33.3 415 6-441 2-456 (466)
10 PRK07056 amidase; Provisional 100.0 5.3E-84 1.1E-88 673.7 34.4 413 12-442 7-452 (454)
11 PRK07235 amidase; Provisional 100.0 1.4E-82 2.9E-87 666.9 38.3 400 29-440 53-500 (502)
12 PRK07042 amidase; Provisional 100.0 3.4E-83 7.3E-88 670.3 33.3 413 7-442 3-453 (464)
13 PRK07486 amidase; Provisional 100.0 7E-83 1.5E-87 671.4 35.1 418 6-441 7-471 (484)
14 PRK12470 amidase; Provisional 100.0 6.8E-83 1.5E-87 666.0 32.5 412 7-440 5-451 (462)
15 PRK06170 amidase; Provisional 100.0 1.1E-82 2.4E-87 671.7 33.8 416 6-441 7-482 (490)
16 PRK07488 indole acetimide hydr 100.0 2.8E-82 6E-87 664.8 34.7 413 7-441 7-465 (472)
17 TIGR00132 gatA glutamyl-tRNA(G 100.0 1E-82 2.3E-87 667.4 29.8 395 29-439 25-459 (460)
18 PRK06061 amidase; Provisional 100.0 3.2E-82 6.9E-87 664.6 32.9 415 3-441 10-468 (483)
19 PRK06529 amidase; Provisional 100.0 7.3E-82 1.6E-86 663.3 33.8 412 11-440 4-477 (482)
20 PRK00012 gatA aspartyl/glutamy 100.0 3.6E-82 7.7E-87 663.2 30.5 394 29-438 21-459 (459)
21 PRK07869 amidase; Provisional 100.0 7.9E-82 1.7E-86 661.4 31.3 415 6-440 10-461 (468)
22 PRK08137 amidase; Provisional 100.0 5E-81 1.1E-85 659.4 33.6 405 8-441 3-483 (497)
23 PRK08186 allophanate hydrolase 100.0 5.3E-81 1.1E-85 664.4 33.0 411 12-442 8-449 (600)
24 PRK07139 amidase; Provisional 100.0 9.2E-80 2E-84 637.5 37.0 393 26-442 12-434 (439)
25 TIGR02713 allophanate_hyd allo 100.0 8.6E-80 1.9E-84 648.0 32.3 367 55-441 29-411 (561)
26 PRK06828 amidase; Provisional 100.0 1.8E-76 4E-81 617.1 32.4 387 12-440 14-481 (491)
27 PF01425 Amidase: Amidase; In 100.0 3.3E-78 7.2E-83 639.2 16.8 385 28-431 11-441 (441)
28 PRK11910 amidase; Provisional 100.0 1.2E-74 2.6E-79 602.5 31.9 392 5-442 159-607 (615)
29 PRK06707 amidase; Provisional 100.0 1.4E-72 3.1E-77 590.2 30.9 386 8-441 68-528 (536)
30 PRK06565 amidase; Validated 100.0 1.6E-70 3.4E-75 567.7 26.2 423 10-442 6-555 (566)
31 KOG1211 Amidases [Translation, 100.0 5.7E-66 1.2E-70 516.7 18.9 377 50-439 74-493 (506)
32 KOG1212 Amidases [Translation, 100.0 1.3E-61 2.9E-66 489.7 20.9 411 8-444 52-554 (560)
33 KOG0553 TPR repeat-containing 99.8 4.6E-18 1E-22 158.5 14.0 121 459-579 76-196 (304)
34 PRK15359 type III secretion sy 99.7 2.5E-15 5.5E-20 132.0 15.7 113 467-579 27-139 (144)
35 KOG4626 O-linked N-acetylgluco 99.6 6.1E-15 1.3E-19 148.5 11.5 141 430-579 227-367 (966)
36 PRK15363 pathogenicity island 99.6 1.8E-13 4E-18 117.8 15.6 106 461-566 32-137 (157)
37 KOG0548 Molecular co-chaperone 99.5 1.4E-13 3E-18 137.6 16.9 141 429-578 332-472 (539)
38 KOG4626 O-linked N-acetylgluco 99.5 3.3E-14 7.1E-19 143.3 11.7 127 451-577 341-467 (966)
39 TIGR02552 LcrH_SycD type III s 99.5 2E-13 4.4E-18 119.1 15.0 121 458-578 11-131 (135)
40 PRK10370 formate-dependent nit 99.5 1.5E-13 3.3E-18 127.3 14.9 125 452-576 61-188 (198)
41 PLN03088 SGT1, suppressor of 99.5 2.1E-13 4.6E-18 138.3 16.6 114 466-579 4-117 (356)
42 KOG0543 FKBP-type peptidyl-pro 99.5 3E-13 6.5E-18 131.8 14.9 118 462-579 206-338 (397)
43 COG3063 PilF Tfp pilus assembl 99.5 1.6E-12 3.6E-17 116.9 14.2 136 442-577 47-184 (250)
44 PRK11189 lipoprotein NlpI; Pro 99.5 2.5E-12 5.4E-17 127.7 17.1 107 461-567 61-167 (296)
45 KOG4234 TPR repeat-containing 99.4 3.6E-12 7.8E-17 111.6 14.7 118 461-578 92-214 (271)
46 KOG4648 Uncharacterized conser 99.4 9.7E-13 2.1E-17 124.1 9.7 112 466-577 99-210 (536)
47 TIGR00990 3a0801s09 mitochondr 99.4 2.2E-11 4.7E-16 134.0 18.0 124 454-577 355-478 (615)
48 TIGR02795 tol_pal_ybgF tol-pal 99.3 2.9E-11 6.3E-16 102.6 14.2 111 464-574 2-118 (119)
49 KOG1126 DNA-binding cell divis 99.3 1.7E-12 3.6E-17 133.1 7.1 151 424-577 418-568 (638)
50 KOG1155 Anaphase-promoting com 99.3 2.2E-11 4.8E-16 119.6 14.1 124 456-579 356-479 (559)
51 TIGR00990 3a0801s09 mitochondr 99.3 4.7E-11 1E-15 131.4 18.7 118 460-577 327-444 (615)
52 PRK12370 invasion protein regu 99.3 4.1E-11 8.8E-16 129.6 16.4 130 448-577 322-452 (553)
53 PRK09782 bacteriophage N4 rece 99.3 3.8E-11 8.1E-16 135.5 16.5 126 451-577 597-722 (987)
54 COG3063 PilF Tfp pilus assembl 99.3 5.2E-11 1.1E-15 107.4 13.9 115 462-576 33-149 (250)
55 PRK12370 invasion protein regu 99.3 4E-11 8.7E-16 129.7 15.8 131 446-576 354-485 (553)
56 KOG0548 Molecular co-chaperone 99.3 2.4E-11 5.2E-16 121.8 11.7 112 465-576 3-114 (539)
57 PRK15179 Vi polysaccharide bio 99.3 9.5E-11 2.1E-15 127.4 17.3 122 458-579 80-201 (694)
58 KOG1126 DNA-binding cell divis 99.3 3.2E-11 6.9E-16 123.8 12.8 136 444-579 469-604 (638)
59 PRK11189 lipoprotein NlpI; Pro 99.3 1.3E-10 2.8E-15 115.4 16.6 129 449-577 83-282 (296)
60 COG5010 TadD Flp pilus assembl 99.3 1.1E-10 2.5E-15 107.5 14.7 120 459-578 95-214 (257)
61 KOG0547 Translocase of outer m 99.3 4.2E-11 9.2E-16 118.3 12.4 95 462-556 113-207 (606)
62 PLN02789 farnesyltranstransfer 99.3 1.9E-10 4.1E-15 114.1 17.0 128 450-577 57-187 (320)
63 PRK15331 chaperone protein Sic 99.2 4.3E-10 9.4E-15 97.4 15.6 142 429-577 8-149 (165)
64 PF13414 TPR_11: TPR repeat; P 99.2 4.1E-11 8.8E-16 91.0 8.2 67 497-563 2-69 (69)
65 PRK09782 bacteriophage N4 rece 99.2 2.9E-10 6.2E-15 128.4 17.7 118 461-579 573-690 (987)
66 PRK02603 photosystem I assembl 99.2 3.6E-10 7.7E-15 102.9 15.0 108 459-566 30-154 (172)
67 TIGR02521 type_IV_pilW type IV 99.2 6.6E-10 1.4E-14 105.9 17.7 119 458-576 59-179 (234)
68 PRK10370 formate-dependent nit 99.2 2.8E-10 6E-15 105.5 14.1 102 477-578 52-156 (198)
69 cd00189 TPR Tetratricopeptide 99.2 2.6E-10 5.5E-15 91.6 12.2 99 466-564 2-100 (100)
70 KOG1155 Anaphase-promoting com 99.2 1.4E-10 2.9E-15 114.1 12.2 117 463-579 329-445 (559)
71 PF13414 TPR_11: TPR repeat; P 99.2 5.7E-11 1.2E-15 90.2 7.7 67 463-529 2-69 (69)
72 KOG0624 dsRNA-activated protei 99.2 1.6E-10 3.5E-15 109.4 11.7 116 460-575 34-152 (504)
73 COG4235 Cytochrome c biogenesi 99.2 8E-11 1.7E-15 111.4 9.8 119 457-575 149-270 (287)
74 KOG1125 TPR repeat-containing 99.2 4.9E-11 1.1E-15 120.5 8.7 103 462-564 428-530 (579)
75 PRK15359 type III secretion sy 99.2 1.5E-10 3.4E-15 101.6 10.3 97 449-545 43-139 (144)
76 PRK10803 tol-pal system protei 99.2 9.2E-10 2E-14 106.0 16.2 113 465-577 143-262 (263)
77 PRK15179 Vi polysaccharide bio 99.1 5.5E-10 1.2E-14 121.5 15.3 155 420-576 78-233 (694)
78 KOG0547 Translocase of outer m 99.1 1.9E-10 4.1E-15 113.8 10.1 109 467-575 363-471 (606)
79 PRK15174 Vi polysaccharide exp 99.1 8E-10 1.7E-14 121.7 16.1 114 460-573 242-359 (656)
80 TIGR02521 type_IV_pilW type IV 99.1 2.1E-09 4.5E-14 102.4 17.1 119 459-577 94-214 (234)
81 PF13429 TPR_15: Tetratricopep 99.1 2.5E-10 5.4E-15 112.9 10.6 118 461-578 143-260 (280)
82 KOG0553 TPR repeat-containing 99.1 2.4E-10 5.1E-15 107.4 9.6 121 441-561 92-215 (304)
83 KOG0550 Molecular chaperone (D 99.1 3.2E-10 7E-15 110.1 10.7 116 458-574 243-362 (486)
84 TIGR03302 OM_YfiO outer membra 99.1 9.6E-10 2.1E-14 105.7 14.2 114 460-573 29-156 (235)
85 PF12895 Apc3: Anaphase-promot 99.1 1.8E-10 4E-15 91.1 7.5 82 476-558 1-84 (84)
86 CHL00033 ycf3 photosystem I as 99.1 3E-09 6.6E-14 96.4 15.7 106 461-566 32-154 (168)
87 PRK15174 Vi polysaccharide exp 99.1 1.5E-09 3.2E-14 119.6 16.1 124 449-572 61-184 (656)
88 PLN02789 farnesyltranstransfer 99.1 1.5E-09 3.1E-14 107.9 13.5 122 457-578 99-229 (320)
89 PF13432 TPR_16: Tetratricopep 99.1 5.5E-10 1.2E-14 83.6 7.9 64 503-566 2-65 (65)
90 PRK11447 cellulose synthase su 99.1 1.6E-09 3.4E-14 127.4 15.6 130 447-576 286-429 (1157)
91 PRK10049 pgaA outer membrane p 99.1 3.2E-09 6.9E-14 119.4 17.3 117 460-577 45-161 (765)
92 TIGR03302 OM_YfiO outer membra 99.1 4.6E-09 1E-13 101.0 15.7 117 462-578 68-215 (235)
93 COG4783 Putative Zn-dependent 99.1 4.7E-09 1E-13 104.8 15.8 118 461-578 303-420 (484)
94 PF13432 TPR_16: Tetratricopep 99.1 6.7E-10 1.5E-14 83.1 7.7 65 468-532 1-65 (65)
95 KOG0545 Aryl-hydrocarbon recep 99.0 2.8E-09 6.1E-14 96.6 12.4 119 451-569 165-301 (329)
96 PRK11447 cellulose synthase su 99.0 4.5E-09 9.9E-14 123.6 17.8 130 446-575 367-538 (1157)
97 KOG0376 Serine-threonine phosp 99.0 3.3E-10 7.1E-15 112.9 6.9 116 464-579 4-119 (476)
98 TIGR02552 LcrH_SycD type III s 99.0 2.5E-09 5.4E-14 93.1 11.6 94 485-578 4-97 (135)
99 COG5010 TadD Flp pilus assembl 99.0 5.2E-09 1.1E-13 96.6 13.1 117 459-576 62-178 (257)
100 PF13512 TPR_18: Tetratricopep 99.0 1E-08 2.2E-13 87.0 13.4 111 463-573 9-140 (142)
101 KOG4642 Chaperone-dependent E3 99.0 1.1E-09 2.4E-14 99.0 7.9 115 462-576 8-127 (284)
102 COG1729 Uncharacterized protei 99.0 1.4E-08 3E-13 95.2 15.1 111 467-577 144-260 (262)
103 TIGR02917 PEP_TPR_lipo putativ 98.9 1.4E-08 3E-13 117.0 16.5 121 456-577 762-882 (899)
104 KOG1125 TPR repeat-containing 98.9 9.9E-09 2.1E-13 104.2 13.0 126 450-575 339-507 (579)
105 KOG3060 Uncharacterized conser 98.9 5E-08 1.1E-12 89.4 15.5 125 452-576 108-235 (289)
106 PRK10049 pgaA outer membrane p 98.9 4.2E-08 9.2E-13 110.4 18.0 112 463-574 358-469 (765)
107 KOG0551 Hsp90 co-chaperone CNS 98.9 1.5E-08 3.2E-13 96.1 11.7 110 462-571 79-192 (390)
108 PLN03088 SGT1, suppressor of 98.9 1.5E-08 3.2E-13 103.1 12.5 107 440-546 12-118 (356)
109 KOG4162 Predicted calmodulin-b 98.9 1.9E-08 4.1E-13 105.1 13.2 107 460-566 680-788 (799)
110 PRK11788 tetratricopeptide rep 98.9 4.2E-08 9E-13 102.0 16.1 112 464-576 180-292 (389)
111 PRK15363 pathogenicity island 98.9 1.7E-08 3.8E-13 87.2 10.8 90 490-579 26-116 (157)
112 COG4783 Putative Zn-dependent 98.9 4.7E-08 1E-12 97.8 15.2 125 454-578 330-454 (484)
113 PF13371 TPR_9: Tetratricopept 98.9 1.1E-08 2.3E-13 78.5 8.4 71 505-575 2-72 (73)
114 KOG4555 TPR repeat-containing 98.9 6.5E-08 1.4E-12 79.2 12.7 104 463-566 42-149 (175)
115 KOG2076 RNA polymerase III tra 98.9 6.4E-08 1.4E-12 103.0 16.2 134 430-563 139-272 (895)
116 KOG1173 Anaphase-promoting com 98.9 2E-08 4.3E-13 101.6 11.7 127 451-577 401-534 (611)
117 PRK11788 tetratricopeptide rep 98.8 5.7E-08 1.2E-12 100.9 15.6 115 459-574 209-324 (389)
118 TIGR02917 PEP_TPR_lipo putativ 98.8 7.1E-08 1.5E-12 111.1 17.4 118 459-576 562-679 (899)
119 KOG2076 RNA polymerase III tra 98.8 1.3E-07 2.8E-12 100.7 17.0 118 462-579 137-254 (895)
120 PF12688 TPR_5: Tetratrico pep 98.8 1.1E-07 2.3E-12 79.7 13.1 96 465-560 2-103 (120)
121 KOG3060 Uncharacterized conser 98.8 1.9E-07 4.1E-12 85.7 15.4 137 440-576 62-198 (289)
122 PF14559 TPR_19: Tetratricopep 98.8 1.4E-08 3.1E-13 76.6 7.1 62 476-537 3-64 (68)
123 KOG0624 dsRNA-activated protei 98.8 1.6E-07 3.5E-12 89.4 15.2 114 465-578 156-269 (504)
124 PF14559 TPR_19: Tetratricopep 98.8 1.7E-08 3.7E-13 76.2 7.2 68 508-575 1-68 (68)
125 PF06552 TOM20_plant: Plant sp 98.8 5.9E-08 1.3E-12 84.9 11.2 98 480-577 7-125 (186)
126 COG4785 NlpI Lipoprotein NlpI, 98.8 3.8E-08 8.3E-13 87.8 9.7 108 461-568 62-169 (297)
127 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 5.4E-08 1.2E-12 97.8 12.0 71 458-528 69-142 (453)
128 KOG2003 TPR repeat-containing 98.8 3.6E-08 7.7E-13 96.8 10.1 117 461-577 487-603 (840)
129 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.2E-08 7E-13 99.4 10.0 69 493-561 70-141 (453)
130 PF13371 TPR_9: Tetratricopept 98.8 4.4E-08 9.5E-13 75.1 8.6 70 471-540 2-71 (73)
131 PF09976 TPR_21: Tetratricopep 98.8 1.3E-07 2.8E-12 83.3 12.4 97 462-559 46-145 (145)
132 PRK10866 outer membrane biogen 98.8 3E-07 6.6E-12 88.0 15.8 113 462-574 30-166 (243)
133 PF13525 YfiO: Outer membrane 98.7 2.8E-07 6.1E-12 86.1 14.2 113 462-574 3-132 (203)
134 KOG2002 TPR-containing nuclear 98.7 2.3E-07 4.9E-12 99.5 14.8 119 460-578 303-426 (1018)
135 KOG2002 TPR-containing nuclear 98.7 2E-07 4.2E-12 100.0 13.6 122 456-577 262-387 (1018)
136 PRK14574 hmsH outer membrane p 98.7 2.6E-07 5.7E-12 102.7 15.1 125 444-568 48-172 (822)
137 KOG0543 FKBP-type peptidyl-pro 98.7 4.3E-07 9.3E-12 89.3 14.6 101 463-563 256-357 (397)
138 PF13429 TPR_15: Tetratricopep 98.7 3.6E-08 7.8E-13 97.4 7.1 116 446-561 162-277 (280)
139 PRK11906 transcriptional regul 98.7 5.3E-07 1.2E-11 90.9 15.3 114 458-571 289-411 (458)
140 KOG0550 Molecular chaperone (D 98.7 9.1E-08 2E-12 93.4 8.9 118 460-577 199-332 (486)
141 CHL00033 ycf3 photosystem I as 98.6 2.6E-07 5.7E-12 83.7 11.3 106 472-577 7-117 (168)
142 PRK10153 DNA-binding transcrip 98.6 3.9E-07 8.5E-12 96.5 14.2 119 448-567 360-488 (517)
143 KOG1129 TPR repeat-containing 98.6 6.5E-08 1.4E-12 91.5 6.8 114 462-575 322-438 (478)
144 KOG1128 Uncharacterized conser 98.6 2.2E-07 4.9E-12 96.8 10.3 111 463-573 484-594 (777)
145 cd05804 StaR_like StaR_like; a 98.6 5.2E-07 1.1E-11 92.5 13.2 104 460-563 110-217 (355)
146 PRK14574 hmsH outer membrane p 98.6 8.4E-07 1.8E-11 98.7 15.1 116 461-577 99-214 (822)
147 COG2956 Predicted N-acetylgluc 98.6 2.7E-06 5.8E-11 80.8 15.5 111 459-569 175-286 (389)
148 TIGR00540 hemY_coli hemY prote 98.5 1.3E-06 2.8E-11 91.2 14.8 117 461-578 260-382 (409)
149 KOG1156 N-terminal acetyltrans 98.5 6.2E-07 1.3E-11 92.4 11.7 112 466-577 9-120 (700)
150 COG2956 Predicted N-acetylgluc 98.5 5E-06 1.1E-10 79.0 16.7 121 450-571 200-321 (389)
151 COG4235 Cytochrome c biogenesi 98.5 1.3E-06 2.8E-11 83.1 12.7 97 480-576 138-237 (287)
152 KOG1129 TPR repeat-containing 98.5 3.4E-07 7.4E-12 86.7 8.4 127 449-575 275-404 (478)
153 PF13424 TPR_12: Tetratricopep 98.5 1.3E-07 2.9E-12 73.4 4.6 63 499-561 6-75 (78)
154 PF13424 TPR_12: Tetratricopep 98.5 3.6E-07 7.8E-12 71.0 6.8 68 461-528 2-76 (78)
155 PRK14720 transcript cleavage f 98.5 1.6E-06 3.4E-11 95.7 13.4 115 460-576 27-160 (906)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.6E-06 5.7E-11 86.4 14.2 105 465-569 201-305 (395)
157 PRK02603 photosystem I assembl 98.5 1.4E-06 3E-11 79.2 10.9 84 495-578 32-118 (172)
158 KOG1173 Anaphase-promoting com 98.4 9.8E-07 2.1E-11 89.6 10.3 118 458-575 306-423 (611)
159 cd00189 TPR Tetratricopeptide 98.4 1.8E-06 4E-11 68.7 10.1 78 500-577 2-79 (100)
160 PRK11906 transcriptional regul 98.4 1.1E-05 2.3E-10 81.7 17.5 111 466-576 257-382 (458)
161 KOG1840 Kinesin light chain [C 98.4 3.9E-06 8.4E-11 87.5 14.4 119 460-578 237-379 (508)
162 PRK10153 DNA-binding transcrip 98.4 6.5E-06 1.4E-10 87.4 16.4 115 463-578 338-465 (517)
163 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.3E-06 7.2E-11 71.3 11.0 73 463-535 38-113 (119)
164 KOG4162 Predicted calmodulin-b 98.4 4.2E-06 9.1E-11 88.0 13.4 116 464-579 650-767 (799)
165 KOG1174 Anaphase-promoting com 98.4 4.8E-06 1E-10 81.5 12.8 126 454-579 324-518 (564)
166 cd05804 StaR_like StaR_like; a 98.4 6E-06 1.3E-10 84.6 14.1 102 465-566 44-182 (355)
167 KOG1840 Kinesin light chain [C 98.4 5.4E-06 1.2E-10 86.5 13.6 105 458-562 277-397 (508)
168 KOG0495 HAT repeat protein [RN 98.4 5.7E-06 1.2E-10 85.3 13.3 121 458-579 612-732 (913)
169 TIGR00540 hemY_coli hemY prote 98.3 1.6E-05 3.4E-10 83.1 16.7 110 460-569 114-224 (409)
170 PRK10747 putative protoheme IX 98.3 1.2E-05 2.6E-10 83.5 15.5 115 458-576 257-371 (398)
171 PF09976 TPR_21: Tetratricopep 98.3 3E-05 6.4E-10 68.2 15.5 115 462-577 9-129 (145)
172 KOG1128 Uncharacterized conser 98.3 3.7E-06 8.1E-11 87.9 10.7 150 414-563 456-618 (777)
173 KOG2003 TPR repeat-containing 98.3 1.2E-05 2.7E-10 79.4 13.7 115 461-575 589-703 (840)
174 PRK14720 transcript cleavage f 98.3 4.7E-06 1E-10 92.0 11.9 107 454-563 55-180 (906)
175 KOG1308 Hsp70-interacting prot 98.3 3.3E-07 7.1E-12 87.7 2.4 99 466-564 116-214 (377)
176 COG4105 ComL DNA uptake lipopr 98.3 2.7E-05 5.8E-10 72.7 14.5 115 462-576 32-160 (254)
177 PF13525 YfiO: Outer membrane 98.3 3.3E-05 7.2E-10 72.1 15.3 116 461-576 39-185 (203)
178 PRK10747 putative protoheme IX 98.2 2.4E-05 5.2E-10 81.3 15.3 106 465-570 118-225 (398)
179 PF12895 Apc3: Anaphase-promot 98.2 5.3E-06 1.2E-10 65.4 7.8 61 463-524 24-84 (84)
180 PF04733 Coatomer_E: Coatomer 98.2 1.1E-05 2.5E-10 79.2 11.7 111 462-572 163-276 (290)
181 KOG1156 N-terminal acetyltrans 98.2 1.7E-05 3.6E-10 82.1 12.9 116 459-574 36-151 (700)
182 KOG1127 TPR repeat-containing 98.2 5.5E-06 1.2E-10 89.2 8.3 127 452-578 480-642 (1238)
183 PRK10803 tol-pal system protei 98.1 1.6E-05 3.5E-10 76.7 10.7 108 426-535 141-254 (263)
184 PF13431 TPR_17: Tetratricopep 98.1 2.3E-06 5.1E-11 54.1 3.2 32 521-552 2-33 (34)
185 COG4700 Uncharacterized protei 98.1 0.00013 2.9E-09 64.0 15.0 103 464-566 89-194 (251)
186 PF13428 TPR_14: Tetratricopep 98.1 6.7E-06 1.4E-10 55.7 5.2 40 500-539 3-42 (44)
187 PRK10866 outer membrane biogen 98.1 0.00019 4.1E-09 68.8 17.0 114 462-575 67-218 (243)
188 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.9E-05 1.5E-09 76.2 14.6 105 472-579 177-281 (395)
189 PF12569 NARP1: NMDA receptor- 98.1 0.00013 2.9E-09 77.1 17.0 47 461-507 35-81 (517)
190 PF13428 TPR_14: Tetratricopep 98.1 8.4E-06 1.8E-10 55.2 5.2 44 532-575 1-44 (44)
191 PF04733 Coatomer_E: Coatomer 98.0 5.1E-05 1.1E-09 74.6 12.1 115 463-577 130-246 (290)
192 PF12688 TPR_5: Tetratrico pep 98.0 5.8E-05 1.3E-09 63.3 10.7 76 499-574 2-83 (120)
193 KOG1127 TPR repeat-containing 98.0 4.9E-05 1.1E-09 82.2 12.5 100 467-566 5-108 (1238)
194 KOG1174 Anaphase-promoting com 98.0 7.7E-05 1.7E-09 73.3 12.5 107 466-572 302-408 (564)
195 KOG4234 TPR repeat-containing 98.0 9.6E-05 2.1E-09 65.7 11.4 78 462-539 132-209 (271)
196 PF13431 TPR_17: Tetratricopep 98.0 7.2E-06 1.6E-10 51.8 3.3 34 486-519 1-34 (34)
197 KOG0495 HAT repeat protein [RN 98.0 9.2E-05 2E-09 76.8 12.4 115 462-576 649-763 (913)
198 PF06552 TOM20_plant: Plant sp 97.9 0.00015 3.3E-09 63.8 11.9 82 459-540 20-122 (186)
199 PF00515 TPR_1: Tetratricopept 97.9 1.6E-05 3.6E-10 50.4 4.3 32 533-564 2-33 (34)
200 PF00515 TPR_1: Tetratricopept 97.9 2.1E-05 4.5E-10 49.9 4.4 32 499-530 2-33 (34)
201 PRK15331 chaperone protein Sic 97.9 5.4E-05 1.2E-09 66.1 8.2 90 490-579 29-118 (165)
202 KOG3785 Uncharacterized conser 97.8 0.00024 5.2E-09 68.6 12.2 109 465-573 58-192 (557)
203 PF07719 TPR_2: Tetratricopept 97.8 4.1E-05 8.9E-10 48.5 5.0 32 533-564 2-33 (34)
204 PF12569 NARP1: NMDA receptor- 97.8 0.00058 1.2E-08 72.3 16.2 99 464-562 194-292 (517)
205 KOG4648 Uncharacterized conser 97.8 2.4E-05 5.2E-10 74.9 5.2 78 501-578 100-177 (536)
206 KOG1310 WD40 repeat protein [G 97.8 6.6E-05 1.4E-09 75.8 8.5 113 459-571 369-484 (758)
207 PF07719 TPR_2: Tetratricopept 97.8 4.7E-05 1E-09 48.2 5.0 33 499-531 2-34 (34)
208 PF03704 BTAD: Bacterial trans 97.8 0.00081 1.7E-08 59.1 14.1 97 465-561 7-125 (146)
209 PF14938 SNAP: Soluble NSF att 97.8 0.00015 3.2E-09 71.6 10.0 101 462-563 73-186 (282)
210 PF13512 TPR_18: Tetratricopep 97.7 0.00044 9.5E-09 59.1 10.8 73 462-534 45-135 (142)
211 KOG2376 Signal recognition par 97.7 0.00044 9.5E-09 71.2 12.7 128 442-573 24-151 (652)
212 COG3071 HemY Uncharacterized e 97.7 0.00067 1.5E-08 66.8 13.1 98 462-560 261-389 (400)
213 PF14938 SNAP: Soluble NSF att 97.7 0.00032 7E-09 69.1 11.3 104 462-565 112-229 (282)
214 KOG4340 Uncharacterized conser 97.7 0.00012 2.7E-09 68.9 7.5 126 428-555 108-264 (459)
215 KOG1130 Predicted G-alpha GTPa 97.7 6.6E-05 1.4E-09 73.6 5.9 100 463-562 194-305 (639)
216 KOG2796 Uncharacterized conser 97.6 0.0006 1.3E-08 63.3 10.6 116 461-576 209-333 (366)
217 PF12968 DUF3856: Domain of Un 97.6 0.0012 2.6E-08 53.6 10.8 94 468-561 13-129 (144)
218 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00035 7.5E-09 48.9 6.8 47 533-579 2-48 (53)
219 COG4785 NlpI Lipoprotein NlpI, 97.6 0.00067 1.5E-08 61.2 10.3 110 447-557 82-191 (297)
220 KOG2471 TPR repeat-containing 97.6 0.0003 6.5E-09 70.6 8.9 115 462-576 238-379 (696)
221 KOG3364 Membrane protein invol 97.6 0.0017 3.7E-08 54.2 11.6 83 497-579 31-118 (149)
222 COG1729 Uncharacterized protei 97.6 0.00063 1.4E-08 64.3 10.4 79 460-538 174-255 (262)
223 KOG2376 Signal recognition par 97.5 0.0046 9.9E-08 64.0 15.7 89 468-559 83-202 (652)
224 KOG1130 Predicted G-alpha GTPa 97.5 0.00044 9.5E-09 68.1 8.2 99 463-561 234-344 (639)
225 PRK10941 hypothetical protein; 97.4 0.0013 2.8E-08 63.5 11.3 73 466-538 183-255 (269)
226 KOG4555 TPR repeat-containing 97.4 0.00088 1.9E-08 55.4 8.0 64 501-564 46-109 (175)
227 KOG3785 Uncharacterized conser 97.4 0.0012 2.7E-08 63.8 10.0 87 472-558 30-117 (557)
228 PF13181 TPR_8: Tetratricopept 97.3 0.00038 8.2E-09 43.9 4.2 30 534-563 3-32 (34)
229 KOG4340 Uncharacterized conser 97.3 0.0021 4.5E-08 60.9 10.5 109 460-568 40-180 (459)
230 PF13181 TPR_8: Tetratricopept 97.3 0.00042 9.1E-09 43.7 4.2 32 499-530 2-33 (34)
231 COG3118 Thioredoxin domain-con 97.3 0.0083 1.8E-07 57.3 14.4 98 466-563 136-267 (304)
232 COG2976 Uncharacterized protei 97.3 0.0058 1.3E-07 54.6 12.4 101 464-566 89-193 (207)
233 KOG4642 Chaperone-dependent E3 97.2 0.00046 9.9E-09 63.3 5.2 78 500-577 12-89 (284)
234 COG0457 NrfG FOG: TPR repeat [ 97.2 0.0091 2E-07 55.6 14.6 108 468-575 133-245 (291)
235 COG4700 Uncharacterized protei 97.2 0.012 2.6E-07 52.1 13.5 98 462-560 122-221 (251)
236 COG0457 NrfG FOG: TPR repeat [ 97.2 0.026 5.7E-07 52.4 17.3 103 462-564 165-268 (291)
237 KOG0376 Serine-threonine phosp 97.2 0.00028 6E-09 71.3 3.3 110 434-543 8-117 (476)
238 PF05843 Suf: Suppressor of fo 97.1 0.0068 1.5E-07 59.6 12.8 123 450-572 21-147 (280)
239 KOG2796 Uncharacterized conser 97.1 0.013 2.8E-07 54.7 13.4 115 462-576 175-296 (366)
240 KOG2053 Mitochondrial inherita 97.1 0.0092 2E-07 64.7 14.1 119 456-575 35-154 (932)
241 KOG0546 HSP90 co-chaperone CPR 97.0 0.0008 1.7E-08 65.3 4.9 116 464-579 222-356 (372)
242 KOG0551 Hsp90 co-chaperone CNS 97.0 0.013 2.9E-07 56.5 12.6 70 462-531 117-186 (390)
243 PF04184 ST7: ST7 protein; In 97.0 0.0095 2.1E-07 60.8 12.3 131 438-570 176-334 (539)
244 PF10300 DUF3808: Protein of u 97.0 0.0051 1.1E-07 65.0 10.9 105 458-563 261-378 (468)
245 COG3071 HemY Uncharacterized e 97.0 0.028 6.2E-07 55.7 15.1 92 470-561 124-216 (400)
246 PF04781 DUF627: Protein of un 97.0 0.0072 1.6E-07 49.0 9.1 93 470-562 2-108 (111)
247 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0041 8.9E-08 43.5 6.8 43 499-541 2-44 (53)
248 PRK10941 hypothetical protein; 96.9 0.022 4.8E-07 55.1 13.9 80 499-578 182-261 (269)
249 KOG3081 Vesicle coat complex C 96.9 0.022 4.7E-07 53.5 13.2 106 464-569 169-279 (299)
250 KOG4507 Uncharacterized conser 96.9 0.0027 5.9E-08 65.3 7.4 106 471-576 614-720 (886)
251 COG4105 ComL DNA uptake lipopr 96.9 0.086 1.9E-06 49.7 16.7 117 462-578 69-213 (254)
252 KOG2053 Mitochondrial inherita 96.9 0.0089 1.9E-07 64.8 11.4 91 474-564 19-109 (932)
253 PF05843 Suf: Suppressor of fo 96.9 0.031 6.8E-07 54.9 14.6 101 466-566 3-104 (280)
254 PF13174 TPR_6: Tetratricopept 96.8 0.0024 5.1E-08 39.8 4.1 31 534-564 2-32 (33)
255 PLN03081 pentatricopeptide (PP 96.8 0.011 2.3E-07 66.5 12.2 95 465-561 463-557 (697)
256 PF09613 HrpB1_HrpK: Bacterial 96.8 0.12 2.7E-06 45.1 15.9 113 462-576 8-120 (160)
257 PF13174 TPR_6: Tetratricopept 96.8 0.0026 5.7E-08 39.6 4.2 31 500-530 2-32 (33)
258 PF10300 DUF3808: Protein of u 96.7 0.015 3.3E-07 61.4 11.9 100 476-575 245-348 (468)
259 KOG3081 Vesicle coat complex C 96.7 0.11 2.3E-06 49.0 15.6 106 468-575 141-250 (299)
260 KOG4814 Uncharacterized conser 96.7 0.035 7.7E-07 58.0 13.6 98 465-562 355-458 (872)
261 KOG3824 Huntingtin interacting 96.7 0.0075 1.6E-07 57.4 8.1 80 462-541 114-193 (472)
262 KOG1915 Cell cycle control pro 96.6 0.027 5.9E-07 56.9 11.9 110 460-569 69-178 (677)
263 PF13176 TPR_7: Tetratricopept 96.6 0.004 8.6E-08 39.9 4.2 25 501-525 2-26 (36)
264 PF03704 BTAD: Bacterial trans 96.6 0.017 3.7E-07 50.7 9.6 65 463-527 61-125 (146)
265 KOG1586 Protein required for f 96.6 0.092 2E-06 48.4 14.1 108 462-569 71-191 (288)
266 PLN03218 maturation of RBCL 1; 96.6 0.063 1.4E-06 62.3 16.5 94 466-560 616-712 (1060)
267 KOG2610 Uncharacterized conser 96.6 0.042 9E-07 53.2 12.4 102 456-557 129-234 (491)
268 KOG2610 Uncharacterized conser 96.6 0.014 3.1E-07 56.3 9.3 103 464-566 175-283 (491)
269 PF15015 NYD-SP12_N: Spermatog 96.5 0.017 3.6E-07 57.5 9.6 93 469-561 181-291 (569)
270 PF13176 TPR_7: Tetratricopept 96.5 0.0051 1.1E-07 39.4 4.1 29 534-562 1-29 (36)
271 PF13281 DUF4071: Domain of un 96.5 0.18 3.9E-06 50.9 17.0 114 463-576 178-349 (374)
272 KOG1941 Acetylcholine receptor 96.5 0.021 4.5E-07 55.8 9.7 102 461-562 159-276 (518)
273 PF14561 TPR_20: Tetratricopep 96.4 0.034 7.4E-07 44.0 9.4 65 483-547 7-73 (90)
274 KOG1941 Acetylcholine receptor 96.4 0.011 2.3E-07 57.7 7.6 97 465-561 123-235 (518)
275 COG4976 Predicted methyltransf 96.4 0.0048 1E-07 56.4 4.9 59 474-532 5-63 (287)
276 KOG2396 HAT (Half-A-TPR) repea 96.4 0.052 1.1E-06 55.4 12.5 95 482-576 89-184 (568)
277 KOG3824 Huntingtin interacting 96.4 0.013 2.9E-07 55.8 7.8 66 509-574 127-192 (472)
278 PLN03218 maturation of RBCL 1; 96.4 0.13 2.8E-06 59.8 17.3 96 465-561 580-678 (1060)
279 PF04184 ST7: ST7 protein; In 96.4 0.038 8.2E-07 56.6 11.4 109 464-572 259-386 (539)
280 PF09986 DUF2225: Uncharacteri 96.4 0.044 9.4E-07 51.3 11.2 91 476-566 89-199 (214)
281 KOG1585 Protein required for f 96.3 0.11 2.3E-06 48.3 13.1 103 463-565 30-143 (308)
282 smart00028 TPR Tetratricopepti 96.3 0.0064 1.4E-07 36.9 3.8 31 534-564 3-33 (34)
283 PF10602 RPN7: 26S proteasome 96.2 0.25 5.4E-06 44.8 15.2 101 462-562 34-143 (177)
284 PLN03081 pentatricopeptide (PP 96.2 0.041 8.8E-07 61.9 12.1 109 466-576 428-538 (697)
285 PLN03077 Protein ECB2; Provisi 96.2 0.072 1.6E-06 61.5 14.3 104 470-575 595-700 (857)
286 KOG1586 Protein required for f 96.2 0.06 1.3E-06 49.6 10.6 104 465-568 114-231 (288)
287 PRK04841 transcriptional regul 96.2 0.094 2E-06 61.0 15.4 99 464-562 452-561 (903)
288 KOG1070 rRNA processing protei 96.2 0.1 2.2E-06 59.6 14.4 113 464-576 1530-1644(1710)
289 smart00028 TPR Tetratricopepti 96.1 0.0085 1.8E-07 36.3 3.8 32 499-530 2-33 (34)
290 KOG2471 TPR repeat-containing 96.1 0.0065 1.4E-07 61.4 4.6 83 463-545 282-382 (696)
291 KOG1308 Hsp70-interacting prot 96.1 0.0076 1.6E-07 58.5 4.9 90 442-531 126-215 (377)
292 KOG0545 Aryl-hydrocarbon recep 96.1 0.045 9.8E-07 50.7 9.4 74 462-535 228-301 (329)
293 KOG1915 Cell cycle control pro 96.1 0.13 2.7E-06 52.3 13.2 100 462-562 402-501 (677)
294 PRK04841 transcriptional regul 96.1 0.09 2E-06 61.1 14.5 101 463-563 530-643 (903)
295 PLN03077 Protein ECB2; Provisi 96.0 0.066 1.4E-06 61.8 12.6 101 462-564 552-656 (857)
296 COG4976 Predicted methyltransf 95.9 0.013 2.8E-07 53.7 4.9 61 507-567 4-64 (287)
297 COG3914 Spy Predicted O-linked 95.8 0.16 3.5E-06 53.1 13.1 114 461-575 65-185 (620)
298 KOG0530 Protein farnesyltransf 95.6 0.17 3.6E-06 47.6 11.0 116 456-571 69-186 (318)
299 PF14561 TPR_20: Tetratricopep 95.6 0.08 1.7E-06 41.9 7.9 60 517-576 7-68 (90)
300 KOG1585 Protein required for f 95.6 0.4 8.6E-06 44.7 13.3 94 464-557 71-175 (308)
301 KOG3364 Membrane protein invol 95.5 0.15 3.3E-06 42.8 9.4 80 464-543 32-116 (149)
302 COG2912 Uncharacterized conser 95.5 0.095 2.1E-06 49.9 9.3 76 465-540 182-257 (269)
303 PF02259 FAT: FAT domain; Int 95.5 0.34 7.3E-06 49.3 14.4 118 461-578 143-304 (352)
304 KOG4151 Myosin assembly protei 95.4 0.07 1.5E-06 57.6 9.0 117 462-578 51-173 (748)
305 KOG1070 rRNA processing protei 95.2 0.4 8.6E-06 55.1 14.2 112 462-573 1562-1675(1710)
306 COG5191 Uncharacterized conser 95.0 0.051 1.1E-06 52.0 6.0 75 461-535 104-179 (435)
307 TIGR02561 HrpB1_HrpK type III 94.9 0.48 1.1E-05 40.8 11.0 86 464-549 10-95 (153)
308 PF13281 DUF4071: Domain of un 94.9 0.95 2.1E-05 45.8 14.9 104 463-566 140-260 (374)
309 COG0790 FOG: TPR repeat, SEL1 94.8 0.79 1.7E-05 45.3 14.5 110 462-575 107-232 (292)
310 PF13374 TPR_10: Tetratricopep 94.8 0.062 1.3E-06 35.3 4.5 29 499-527 3-31 (42)
311 KOG0530 Protein farnesyltransf 94.7 0.48 1E-05 44.6 11.3 125 454-578 102-233 (318)
312 COG2912 Uncharacterized conser 94.6 0.25 5.5E-06 47.1 9.4 79 499-577 182-260 (269)
313 KOG0529 Protein geranylgeranyl 94.4 0.45 9.7E-06 47.8 11.1 99 479-577 90-194 (421)
314 PF13374 TPR_10: Tetratricopep 94.4 0.091 2E-06 34.4 4.6 31 532-562 2-32 (42)
315 PF09613 HrpB1_HrpK: Bacterial 94.3 0.76 1.6E-05 40.3 11.0 81 499-579 11-91 (160)
316 PF08424 NRDE-2: NRDE-2, neces 94.2 0.97 2.1E-05 45.4 13.3 108 455-562 10-132 (321)
317 PF08424 NRDE-2: NRDE-2, neces 94.1 1 2.2E-05 45.3 13.4 92 484-575 5-108 (321)
318 PF12862 Apc5: Anaphase-promot 94.0 0.27 5.8E-06 39.3 7.2 56 473-528 7-71 (94)
319 COG3898 Uncharacterized membra 93.9 1.5 3.3E-05 43.7 13.4 104 461-564 185-295 (531)
320 PF08631 SPO22: Meiosis protei 93.9 5 0.00011 39.4 17.5 115 461-575 32-165 (278)
321 PRK13184 pknD serine/threonine 93.8 0.31 6.6E-06 55.4 9.7 105 468-573 479-593 (932)
322 KOG4507 Uncharacterized conser 93.8 0.25 5.5E-06 51.4 8.2 76 466-541 644-719 (886)
323 PF02259 FAT: FAT domain; Int 93.7 1.1 2.5E-05 45.4 13.3 102 463-564 183-341 (352)
324 KOG3617 WD40 and TPR repeat-co 93.4 1 2.2E-05 49.1 12.0 97 464-560 858-995 (1416)
325 COG2976 Uncharacterized protei 93.3 0.84 1.8E-05 41.2 9.6 69 463-532 125-193 (207)
326 KOG1550 Extracellular protein 93.2 1.3 2.8E-05 48.2 13.1 104 466-575 290-405 (552)
327 COG3118 Thioredoxin domain-con 93.1 1.6 3.5E-05 42.1 11.9 77 454-530 158-268 (304)
328 KOG2047 mRNA splicing factor [ 93.1 1.3 2.9E-05 47.0 12.2 102 463-564 476-582 (835)
329 PF10579 Rapsyn_N: Rapsyn N-te 93.1 0.96 2.1E-05 34.3 8.2 65 463-527 5-72 (80)
330 PF09986 DUF2225: Uncharacteri 93.1 2.6 5.7E-05 39.4 13.3 78 462-539 116-207 (214)
331 PF04910 Tcf25: Transcriptiona 93.1 0.77 1.7E-05 46.8 10.5 77 491-567 33-139 (360)
332 KOG1550 Extracellular protein 92.9 1.2 2.6E-05 48.4 12.4 112 462-577 242-371 (552)
333 PF07079 DUF1347: Protein of u 92.8 0.77 1.7E-05 46.7 9.7 59 464-523 462-520 (549)
334 PF12862 Apc5: Anaphase-promot 92.8 0.52 1.1E-05 37.7 7.2 57 507-563 7-72 (94)
335 KOG2300 Uncharacterized conser 92.8 1.3 2.8E-05 45.5 11.2 95 462-556 44-151 (629)
336 KOG2300 Uncharacterized conser 92.3 2.5 5.4E-05 43.5 12.4 98 462-562 365-475 (629)
337 PF10516 SHNi-TPR: SHNi-TPR; 92.1 0.25 5.4E-06 31.8 3.5 28 500-527 3-30 (38)
338 KOG2581 26S proteasome regulat 91.9 5.2 0.00011 40.3 13.8 116 462-578 167-292 (493)
339 PF10373 EST1_DNA_bind: Est1 D 91.6 0.63 1.4E-05 45.5 7.7 62 483-544 1-62 (278)
340 PF07720 TPR_3: Tetratricopept 91.6 0.64 1.4E-05 29.5 4.9 31 534-564 3-35 (36)
341 COG3629 DnrI DNA-binding trans 91.5 1.1 2.4E-05 43.4 8.8 66 462-527 151-216 (280)
342 PF07079 DUF1347: Protein of u 91.5 3 6.6E-05 42.6 12.0 51 507-558 471-521 (549)
343 COG4649 Uncharacterized protei 91.3 6.7 0.00015 34.8 12.5 109 463-572 93-206 (221)
344 PF10516 SHNi-TPR: SHNi-TPR; 91.3 0.34 7.3E-06 31.2 3.5 30 533-562 2-31 (38)
345 KOG2047 mRNA splicing factor [ 91.2 2.1 4.5E-05 45.6 10.9 109 462-570 423-551 (835)
346 PF10373 EST1_DNA_bind: Est1 D 91.2 0.69 1.5E-05 45.3 7.5 62 517-578 1-62 (278)
347 TIGR02561 HrpB1_HrpK type III 91.2 2.9 6.3E-05 36.1 10.0 81 499-579 11-91 (153)
348 KOG2041 WD40 repeat protein [G 91.0 2.3 4.9E-05 45.6 11.0 88 458-557 790-877 (1189)
349 COG3898 Uncharacterized membra 90.6 3.7 8.1E-05 41.1 11.5 97 463-560 119-216 (531)
350 PF11207 DUF2989: Protein of u 90.6 3.1 6.8E-05 38.0 10.2 77 475-552 117-198 (203)
351 KOG2396 HAT (Half-A-TPR) repea 90.5 1.6 3.4E-05 45.1 9.1 74 463-536 104-178 (568)
352 PF07721 TPR_4: Tetratricopept 90.3 0.38 8.1E-06 28.0 2.8 23 534-556 3-25 (26)
353 PF07720 TPR_3: Tetratricopept 90.2 1 2.2E-05 28.7 4.9 20 467-486 4-23 (36)
354 PF07721 TPR_4: Tetratricopept 89.8 0.43 9.4E-06 27.7 2.8 24 499-522 2-25 (26)
355 PF04781 DUF627: Protein of un 89.8 2.1 4.5E-05 35.0 7.6 72 504-575 2-87 (111)
356 COG5191 Uncharacterized conser 89.7 0.57 1.2E-05 45.2 5.0 89 487-575 96-185 (435)
357 KOG0529 Protein geranylgeranyl 89.6 7 0.00015 39.6 12.6 112 467-578 31-157 (421)
358 PF08631 SPO22: Meiosis protei 89.6 6.6 0.00014 38.5 12.8 96 474-569 3-124 (278)
359 COG3629 DnrI DNA-binding trans 89.2 3.8 8.3E-05 39.7 10.4 65 497-561 152-216 (280)
360 PRK15180 Vi polysaccharide bio 89.2 0.77 1.7E-05 46.9 5.7 100 468-567 327-426 (831)
361 COG3914 Spy Predicted O-linked 89.1 4.6 0.0001 42.7 11.4 94 479-572 46-142 (620)
362 TIGR03504 FimV_Cterm FimV C-te 88.9 1.9 4.1E-05 28.8 5.7 24 536-559 3-26 (44)
363 PF10579 Rapsyn_N: Rapsyn N-te 88.6 4.2 9.1E-05 30.9 7.9 62 500-561 8-72 (80)
364 COG0790 FOG: TPR repeat, SEL1 88.4 16 0.00035 35.9 14.8 84 480-568 171-273 (292)
365 PF10602 RPN7: 26S proteasome 88.4 12 0.00026 33.8 12.6 66 498-563 36-104 (177)
366 KOG1310 WD40 repeat protein [G 87.9 1.2 2.7E-05 46.0 6.3 79 453-531 397-478 (758)
367 PF12968 DUF3856: Domain of Un 87.5 6.2 0.00014 32.6 8.8 65 463-527 54-129 (144)
368 KOG4814 Uncharacterized conser 87.5 5.2 0.00011 42.6 10.6 73 499-571 355-433 (872)
369 PF04910 Tcf25: Transcriptiona 87.2 7.9 0.00017 39.5 11.8 107 460-566 99-227 (360)
370 KOG4014 Uncharacterized conser 87.2 22 0.00048 32.0 13.4 110 462-577 66-211 (248)
371 KOG0686 COP9 signalosome, subu 86.9 15 0.00032 37.3 12.8 96 464-559 150-256 (466)
372 KOG3617 WD40 and TPR repeat-co 86.5 4.9 0.00011 44.2 9.9 62 498-559 858-939 (1416)
373 COG2909 MalT ATP-dependent tra 86.5 14 0.0003 41.3 13.4 100 463-562 414-527 (894)
374 KOG3807 Predicted membrane pro 86.2 12 0.00025 36.8 11.4 55 503-557 280-336 (556)
375 PRK15180 Vi polysaccharide bio 86.1 15 0.00032 38.0 12.5 98 470-567 295-392 (831)
376 PF11207 DUF2989: Protein of u 85.9 2.8 6.1E-05 38.3 6.8 57 462-519 139-199 (203)
377 KOG1839 Uncharacterized protei 85.8 2.3 5E-05 49.1 7.6 105 458-562 967-1087(1236)
378 PF10345 Cohesin_load: Cohesin 85.7 62 0.0014 35.7 18.9 113 462-575 57-184 (608)
379 COG4941 Predicted RNA polymera 84.4 6.4 0.00014 38.7 8.8 100 478-578 310-411 (415)
380 PF10255 Paf67: RNA polymerase 84.0 1.8 3.9E-05 44.3 5.3 56 503-559 127-191 (404)
381 KOG0546 HSP90 co-chaperone CPR 83.9 0.66 1.4E-05 45.7 2.1 79 467-545 278-356 (372)
382 KOG2114 Vacuolar assembly/sort 83.8 9.4 0.0002 42.1 10.6 32 462-493 366-397 (933)
383 KOG1914 mRNA cleavage and poly 83.5 9.7 0.00021 40.0 10.1 74 454-528 10-83 (656)
384 PF14863 Alkyl_sulf_dimr: Alky 83.3 3.9 8.6E-05 35.3 6.4 49 465-513 71-119 (141)
385 TIGR03504 FimV_Cterm FimV C-te 82.7 2.4 5.2E-05 28.3 3.8 27 501-527 2-28 (44)
386 COG4455 ImpE Protein of avirul 82.4 13 0.00029 34.4 9.5 94 471-564 8-118 (273)
387 PRK15490 Vi polysaccharide bio 82.3 17 0.00036 39.2 11.8 81 474-556 18-98 (578)
388 PF10255 Paf67: RNA polymerase 82.2 9.3 0.0002 39.3 9.6 60 467-527 125-193 (404)
389 COG4455 ImpE Protein of avirul 82.1 7.1 0.00015 36.1 7.7 61 506-566 9-69 (273)
390 KOG1914 mRNA cleavage and poly 81.7 7.6 0.00016 40.7 8.6 73 488-561 10-82 (656)
391 KOG1258 mRNA processing protei 80.9 85 0.0018 33.7 17.5 116 457-572 290-406 (577)
392 PF11846 DUF3366: Domain of un 80.8 7.7 0.00017 35.6 7.9 50 515-565 128-177 (193)
393 smart00386 HAT HAT (Half-A-TPR 80.7 4.6 0.0001 24.1 4.5 29 547-575 2-30 (33)
394 COG3947 Response regulator con 80.5 6.2 0.00013 38.1 7.0 59 466-524 281-339 (361)
395 COG3947 Response regulator con 80.3 7.6 0.00016 37.5 7.5 61 499-559 280-340 (361)
396 PF09670 Cas_Cas02710: CRISPR- 79.4 34 0.00074 35.2 12.8 94 468-561 135-270 (379)
397 PF11817 Foie-gras_1: Foie gra 79.0 10 0.00023 36.3 8.5 64 462-525 176-245 (247)
398 PF11817 Foie-gras_1: Foie gra 79.0 20 0.00043 34.4 10.4 61 499-559 179-245 (247)
399 PF10858 DUF2659: Protein of u 78.9 36 0.00077 30.0 10.4 99 466-564 95-203 (220)
400 PF14863 Alkyl_sulf_dimr: Alky 78.5 7.1 0.00015 33.7 6.3 53 497-549 69-121 (141)
401 KOG0890 Protein kinase of the 78.0 22 0.00049 44.1 12.0 117 460-578 1666-1801(2382)
402 KOG0985 Vesicle coat protein c 77.4 16 0.00035 41.3 9.9 58 462-524 1102-1159(1666)
403 cd02682 MIT_AAA_Arch MIT: doma 77.2 14 0.00029 28.0 6.7 30 463-492 5-34 (75)
404 PF15015 NYD-SP12_N: Spermatog 75.8 11 0.00023 38.4 7.4 61 466-526 230-290 (569)
405 KOG2581 26S proteasome regulat 74.9 1E+02 0.0022 31.5 13.9 102 460-564 243-352 (493)
406 PF10952 DUF2753: Protein of u 74.9 15 0.00032 30.6 6.7 65 466-530 3-86 (140)
407 cd02682 MIT_AAA_Arch MIT: doma 74.7 12 0.00025 28.4 5.8 36 504-539 12-54 (75)
408 KOG2422 Uncharacterized conser 72.8 44 0.00095 35.6 11.2 99 460-558 280-404 (665)
409 KOG2561 Adaptor protein NUB1, 72.6 23 0.0005 36.2 8.8 95 467-561 166-296 (568)
410 PHA02537 M terminase endonucle 71.2 6.1 0.00013 37.2 4.4 103 475-578 94-223 (230)
411 KOG1258 mRNA processing protei 71.1 1.5E+02 0.0034 31.8 15.3 117 461-577 363-486 (577)
412 KOG1839 Uncharacterized protei 71.1 8.4 0.00018 44.7 6.2 100 462-561 930-1044(1236)
413 smart00386 HAT HAT (Half-A-TPR 70.9 10 0.00023 22.4 4.2 28 512-539 1-28 (33)
414 PF04053 Coatomer_WDAD: Coatom 70.4 53 0.0012 34.5 11.6 83 463-558 346-428 (443)
415 KOG3783 Uncharacterized conser 69.4 38 0.00083 35.8 9.9 63 500-562 451-521 (546)
416 PF10345 Cohesin_load: Cohesin 69.0 69 0.0015 35.4 12.8 58 499-556 362-428 (608)
417 PF13226 DUF4034: Domain of un 68.8 61 0.0013 31.6 10.7 107 471-577 7-144 (277)
418 PRK13184 pknD serine/threonine 68.4 31 0.00068 39.7 10.0 90 478-568 533-627 (932)
419 PF04053 Coatomer_WDAD: Coatom 67.9 47 0.001 34.9 10.6 30 495-524 344-373 (443)
420 PF09205 DUF1955: Domain of un 67.2 37 0.00079 28.9 7.5 61 501-561 88-149 (161)
421 COG5187 RPN7 26S proteasome re 66.7 73 0.0016 31.0 10.4 64 498-561 115-184 (412)
422 PF07219 HemY_N: HemY protein 66.7 29 0.00064 28.3 7.1 52 462-513 57-108 (108)
423 KOG1497 COP9 signalosome, subu 65.6 91 0.002 30.8 10.9 96 465-561 104-213 (399)
424 PF09205 DUF1955: Domain of un 65.4 41 0.00089 28.6 7.5 63 466-528 87-150 (161)
425 KOG3807 Predicted membrane pro 64.8 1.1E+02 0.0024 30.3 11.4 34 530-563 271-306 (556)
426 PF15469 Sec5: Exocyst complex 64.1 45 0.00097 30.2 8.6 83 473-572 95-179 (182)
427 PF04190 DUF410: Protein of un 62.9 1.2E+02 0.0026 29.3 11.7 93 463-555 9-113 (260)
428 PF12854 PPR_1: PPR repeat 62.8 18 0.0004 22.4 4.0 25 499-523 8-32 (34)
429 PF04212 MIT: MIT (microtubule 62.7 20 0.00043 26.5 4.9 29 464-492 5-33 (69)
430 KOG1464 COP9 signalosome, subu 61.7 28 0.0006 33.3 6.6 26 536-561 149-174 (440)
431 TIGR02710 CRISPR-associated pr 60.8 1.6E+02 0.0035 30.2 12.4 20 542-561 256-275 (380)
432 PF12854 PPR_1: PPR repeat 60.3 22 0.00047 22.0 4.0 27 531-557 6-32 (34)
433 cd02681 MIT_calpain7_1 MIT: do 59.8 22 0.00049 27.0 4.7 31 463-493 5-35 (76)
434 PF06957 COPI_C: Coatomer (COP 58.6 92 0.002 32.3 10.4 103 468-570 208-338 (422)
435 PF11846 DUF3366: Domain of un 58.3 33 0.00071 31.4 6.7 48 481-529 128-175 (193)
436 KOG1538 Uncharacterized conser 58.1 22 0.00048 38.2 5.9 81 467-558 750-830 (1081)
437 KOG3783 Uncharacterized conser 58.0 74 0.0016 33.7 9.5 71 461-531 446-524 (546)
438 cd02683 MIT_1 MIT: domain cont 57.6 24 0.00052 26.9 4.6 30 463-492 5-34 (77)
439 KOG3616 Selective LIM binding 57.3 30 0.00066 37.8 6.7 78 469-555 770-847 (1636)
440 KOG0985 Vesicle coat protein c 56.1 93 0.002 35.7 10.3 61 496-561 1102-1162(1666)
441 COG5536 BET4 Protein prenyltra 55.8 38 0.00082 32.7 6.5 119 459-577 103-238 (328)
442 PF01535 PPR: PPR repeat; Int 55.7 19 0.00042 21.0 3.3 23 502-524 4-26 (31)
443 COG5159 RPN6 26S proteasome re 55.6 1.1E+02 0.0024 29.7 9.5 93 468-560 7-153 (421)
444 PRK15490 Vi polysaccharide bio 55.2 97 0.0021 33.6 10.2 61 460-522 38-98 (578)
445 PF07219 HemY_N: HemY protein 53.9 65 0.0014 26.3 7.0 47 501-547 62-108 (108)
446 smart00299 CLH Clathrin heavy 53.8 1.1E+02 0.0024 26.0 9.0 47 475-522 18-64 (140)
447 COG5187 RPN7 26S proteasome re 52.7 2.3E+02 0.0051 27.7 12.6 101 461-561 112-221 (412)
448 PF01239 PPTA: Protein prenylt 51.9 48 0.001 19.8 4.5 18 521-538 6-23 (31)
449 cd02680 MIT_calpain7_2 MIT: do 51.9 32 0.0007 26.0 4.4 31 463-493 5-35 (75)
450 PF08238 Sel1: Sel1 repeat; I 51.3 34 0.00075 21.4 4.1 13 548-560 24-36 (39)
451 cd02678 MIT_VPS4 MIT: domain c 50.6 38 0.00082 25.6 4.8 29 464-492 6-34 (75)
452 KOG2422 Uncharacterized conser 49.8 3.7E+02 0.008 29.1 15.9 88 472-562 350-445 (665)
453 smart00671 SEL1 Sel1-like repe 49.6 32 0.00069 21.0 3.7 14 513-526 20-33 (36)
454 KOG0687 26S proteasome regulat 49.5 2.8E+02 0.0061 27.7 13.5 101 461-561 101-210 (393)
455 KOG0890 Protein kinase of the 49.4 3E+02 0.0065 35.0 13.9 82 480-563 1645-1733(2382)
456 PF04212 MIT: MIT (microtubule 49.2 40 0.00087 24.8 4.7 18 542-559 15-32 (69)
457 COG2909 MalT ATP-dependent tra 49.0 3.9E+02 0.0086 30.4 13.7 93 464-556 458-563 (894)
458 PF13041 PPR_2: PPR repeat fam 49.0 45 0.00097 22.5 4.6 29 499-527 4-32 (50)
459 TIGR00756 PPR pentatricopeptid 48.7 40 0.00087 20.0 4.0 26 501-526 3-28 (35)
460 cd02677 MIT_SNX15 MIT: domain 48.7 24 0.00053 26.7 3.4 17 511-527 19-35 (75)
461 PRK11619 lytic murein transgly 48.5 2.2E+02 0.0048 31.6 12.2 94 466-560 281-374 (644)
462 KOG4563 Cell cycle-regulated h 48.3 44 0.00095 33.5 5.8 58 461-518 38-103 (400)
463 cd02681 MIT_calpain7_1 MIT: do 47.9 40 0.00087 25.6 4.4 24 503-526 11-34 (76)
464 KOG0276 Vesicle coat complex C 47.1 45 0.00099 35.7 6.1 67 486-561 629-695 (794)
465 KOG0276 Vesicle coat complex C 46.6 1.1E+02 0.0023 33.1 8.6 81 473-558 646-747 (794)
466 smart00745 MIT Microtubule Int 46.3 47 0.001 25.0 4.8 27 466-492 10-36 (77)
467 cd02683 MIT_1 MIT: domain cont 46.2 61 0.0013 24.6 5.3 21 506-526 14-34 (77)
468 PF10938 YfdX: YfdX protein; 46.0 1.9E+02 0.004 25.5 9.1 94 467-560 5-145 (155)
469 PF04190 DUF410: Protein of un 45.9 1.1E+02 0.0024 29.6 8.3 36 526-561 134-170 (260)
470 COG5107 RNA14 Pre-mRNA 3'-end 45.4 2.7E+02 0.0059 29.1 10.9 117 457-575 35-161 (660)
471 KOG2758 Translation initiation 45.3 1.5E+02 0.0032 29.4 8.7 69 459-527 124-196 (432)
472 COG5091 SGT1 Suppressor of G2 44.0 28 0.00061 33.1 3.7 91 474-564 5-111 (368)
473 COG3014 Uncharacterized protei 44.0 3.3E+02 0.0071 27.4 10.9 60 468-527 62-154 (449)
474 KOG4014 Uncharacterized conser 44.0 1.8E+02 0.004 26.4 8.4 95 463-562 104-234 (248)
475 KOG2758 Translation initiation 43.8 3.4E+02 0.0074 27.0 11.1 80 482-561 113-196 (432)
476 cd02684 MIT_2 MIT: domain cont 43.7 58 0.0012 24.6 4.8 29 464-492 6-34 (75)
477 cd02679 MIT_spastin MIT: domai 43.6 43 0.00093 25.7 4.0 17 513-529 4-20 (79)
478 COG4649 Uncharacterized protei 43.3 1.7E+02 0.0037 26.4 8.1 73 470-543 138-211 (221)
479 COG1747 Uncharacterized N-term 43.3 3.7E+02 0.008 28.7 11.6 30 542-571 215-244 (711)
480 KOG1464 COP9 signalosome, subu 43.2 74 0.0016 30.6 6.3 51 476-526 39-93 (440)
481 cd02656 MIT MIT: domain contai 43.0 58 0.0013 24.4 4.8 27 466-492 8-34 (75)
482 PF10952 DUF2753: Protein of u 42.7 1E+02 0.0022 25.9 6.2 61 500-560 3-78 (140)
483 COG2015 Alkyl sulfatase and re 41.7 61 0.0013 33.8 5.9 52 464-515 452-503 (655)
484 smart00745 MIT Microtubule Int 41.0 58 0.0013 24.5 4.6 20 508-527 18-37 (77)
485 PF13812 PPR_3: Pentatricopept 40.9 73 0.0016 18.9 4.3 25 501-525 4-28 (34)
486 PF09477 Type_III_YscG: Bacter 39.9 2.1E+02 0.0046 23.4 13.5 86 468-558 10-95 (116)
487 KOG0292 Vesicle coat complex C 39.8 3.8E+02 0.0082 30.6 11.6 111 463-573 990-1125(1202)
488 cd02677 MIT_SNX15 MIT: domain 38.2 69 0.0015 24.2 4.4 30 464-493 6-35 (75)
489 PF13041 PPR_2: PPR repeat fam 38.2 1.2E+02 0.0026 20.2 5.7 31 531-561 2-32 (50)
490 cd00280 TRFH Telomeric Repeat 38.1 72 0.0016 28.8 5.1 53 468-521 115-167 (200)
491 KOG0687 26S proteasome regulat 37.8 3.6E+02 0.0078 26.9 10.1 64 497-560 103-172 (393)
492 PF14689 SPOB_a: Sensor_kinase 37.3 84 0.0018 22.7 4.6 16 508-523 33-48 (62)
493 PF04348 LppC: LppC putative l 37.2 11 0.00024 40.7 0.0 101 462-562 22-128 (536)
494 PF12739 TRAPPC-Trs85: ER-Golg 36.7 4.1E+02 0.0088 27.7 11.5 96 466-561 210-329 (414)
495 KOG0739 AAA+-type ATPase [Post 36.6 1.9E+02 0.0041 28.5 7.9 59 480-561 7-71 (439)
496 cd02679 MIT_spastin MIT: domai 36.2 76 0.0016 24.3 4.4 14 480-493 5-18 (79)
497 KOG3616 Selective LIM binding 35.1 2.5E+02 0.0054 31.2 9.3 19 470-488 712-730 (1636)
498 COG4259 Uncharacterized protei 34.7 2.4E+02 0.0053 22.7 7.4 36 533-568 73-108 (121)
499 PF12753 Nro1: Nuclear pore co 34.6 52 0.0011 33.5 4.1 30 481-512 335-364 (404)
500 TIGR00985 3a0801s04tom mitocho 34.5 2.4E+02 0.0052 24.6 7.7 30 468-497 94-124 (148)
No 1
>PLN02722 indole-3-acetamide amidohydrolase
Probab=100.00 E-value=6.2e-87 Score=684.76 Aligned_cols=406 Identities=59% Similarity=1.009 Sum_probs=335.3
Q ss_pred hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEE
Q 008025 29 NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCI 108 (580)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~ 108 (580)
..|+.+|||++..... ...+...|||+||||+|||+|+++|++||+||+.+.+.+.++.+|+++|+||++||||++
T Consensus 2 ~~~~~~~a~~~~~~~~----~~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiil 77 (422)
T PLN02722 2 ATNPDYGAFMEKFVLS----PTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCV 77 (422)
T ss_pred CcCCCCCcceeecccc----CCCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEE
Confidence 3688999999875331 122246799999999999999999999999999887522356799999999999999999
Q ss_pred EeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccc
Q 008025 109 GKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVS 188 (580)
Q Consensus 109 gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~ 188 (580)
||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+|+|||||||||||||||||||||||+||||
T Consensus 78 GKTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp 157 (422)
T PLN02722 78 GKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVS 157 (422)
T ss_pred EEechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcc
Q 008025 189 HMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQV 266 (580)
Q Consensus 189 ~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~v 266 (580)
+.|++|+++++|++|||+|+++|++.+++++.+.+..+...+.++.+..+.+......++++.+.++++++.+. |+.+
T Consensus 158 ~~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v 237 (422)
T PLN02722 158 TVGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV 237 (422)
T ss_pred CCCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee
Confidence 99999999999999999999999999999998776555566778887755432112234678888888888776 5554
Q ss_pred cccccccccccccCCchhhhhh-----------hhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCC
Q 008025 267 LKHENLGEYFDSKVPSLKGFHK-----------TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEIS 335 (580)
Q Consensus 267 v~~~~l~~~~~~~~p~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s 335 (580)
+.+++...++...+.+..+.. ....+...+..+..++....+..|+......+++.++.+++.|..++
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s 316 (422)
T PLN02722 238 -KHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTT 316 (422)
T ss_pred -eecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCC
Confidence 223333222222222211100 01112234444666677777888888777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCC
Q 008025 336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP 415 (580)
Q Consensus 336 ~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp 415 (580)
..+|.++++.|.++++.+.++|+++|+||+||+|.+||+++........++..++.||.++|++|+|+++||++..+|+|
T Consensus 317 ~~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glP 396 (422)
T PLN02722 317 EEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLP 396 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCC
Confidence 99999999999999999999999999999999999999987543333344445667899999999999999999888999
Q ss_pred cccceecccCCChHHHHHHHHHHH
Q 008025 416 TSVSFIARHGGDRFLLDTVQNMYA 439 (580)
Q Consensus 416 ~g~q~~~~~~~d~~ll~la~~le~ 439 (580)
+|+|+++++++|..++.++..+..
T Consensus 397 vGlqivg~~~~D~~lL~~a~~l~~ 420 (422)
T PLN02722 397 VSVSLLAKHGSDGFLLNLVESLYG 420 (422)
T ss_pred EEEEEECCCCChHHHHHHHHHHHh
Confidence 999999999999999999988764
No 2
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-87 Score=689.98 Aligned_cols=417 Identities=26% Similarity=0.334 Sum_probs=336.5
Q ss_pred HHHHhhhhhhHHHHHH-----HH----h--hhccCCccceeeccccCCCC--CC-------CCCCCCCCCCCceeeeecc
Q 008025 9 WVLLGLGLAGILLMTK-----KL----K--KNIKQDFGAFIEKLQLLPPP--QP-------LPPKAPHPLTGLSFAVSDL 68 (580)
Q Consensus 9 ~~~~~~~l~~~~~~~~-----~~----~--~~~~~~~~a~~~~~~~~~~~--~~-------~~~~~~gpl~Gvp~~vKD~ 68 (580)
...++..|++++..+| ++ + ++.||.+|+|++...+.+.. ++ ..+...|||+||||+||||
T Consensus 5 ~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn 84 (475)
T COG0154 5 TELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDN 84 (475)
T ss_pred hhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeec
Confidence 4456777777744444 32 3 38899999999998886543 22 2345578999999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (580)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa 148 (580)
|+|+|++||+||+.+.+ ++|++|+++|+||+++|||++||||||||+|+.+|+|++||+|+||||++|+|||||||||
T Consensus 85 ~~~~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSA 162 (475)
T COG0154 85 IDTAGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSA 162 (475)
T ss_pred cccCCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHH
Confidence 99999999999999997 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (580)
Q Consensus 149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-- 226 (580)
||||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 163 aAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~ 242 (475)
T COG0154 163 AAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSP 242 (475)
T ss_pred HHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988753322
Q ss_pred --------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhh-hhhh
Q 008025 227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKG-FHKT 289 (580)
Q Consensus 227 --------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~-~~~~ 289 (580)
..++.||++..+.... ...++++.++++++++.|+ |++|++ ..+|.+.. +..
T Consensus 243 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga~v~~---------v~lp~~~~~~~~- 311 (475)
T COG0154 243 LPPPPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGAEVVE---------VSLPLLSDDYAL- 311 (475)
T ss_pred cccccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCCEEEe---------ccCCchhhhhhh-
Confidence 1233467776665432 2246799999999999986 666632 22332211 100
Q ss_pred hhhHHHHHH-HHHHHHHhhhhHH--HHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHHHHhhcCCCCEE
Q 008025 290 NGELKNVMR-LIQRYEFKNNHNE--WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM---RSAISSLLKDDGIL 363 (580)
Q Consensus 290 ~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~---~~~~~~~~~~~Dvl 363 (580)
..+. .......+..... +.......+++++++++..|..++..+|..+...|... ++.+.++|++||+|
T Consensus 312 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~l 386 (475)
T COG0154 312 -----AAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVL 386 (475)
T ss_pred -----hHHHHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 0010 0000011111111 44555678999999999999999999999999888555 99999999999999
Q ss_pred EEcCCCCCCCCCCC-CC-CchHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 364 VTPTTAYPPPKLGG-KE-MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 364 l~Pt~~~~ap~~~~-~~-~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
|+||+|.++|++++ .. ......+..+..||.++|++|+|++|||+++. +|+|+|+|+++++++|..+++++..+|+.
T Consensus 387 l~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~E~~ 466 (475)
T COG0154 387 LTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQA 466 (475)
T ss_pred EeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 99999999999997 21 11112222233589999999999999999998 59999999999999999999999999987
Q ss_pred HHH
Q 008025 441 LQE 443 (580)
Q Consensus 441 l~~ 443 (580)
...
T Consensus 467 ~~~ 469 (475)
T COG0154 467 LGW 469 (475)
T ss_pred hCC
Confidence 654
No 3
>PRK09201 amidase; Provisional
Probab=100.00 E-value=2.7e-85 Score=685.49 Aligned_cols=410 Identities=26% Similarity=0.354 Sum_probs=336.5
Q ss_pred HHHHhhhhhhHHHH-----HHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccc
Q 008025 9 WVLLGLGLAGILLM-----TKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD 70 (580)
Q Consensus 9 ~~~~~~~l~~~~~~-----~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~ 70 (580)
..+++.+|+++++. .|++ + ++.||.+|||++..+|+++++++ .++..|||+||||+|||+|+
T Consensus 5 ~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 84 (465)
T PRK09201 5 SSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFD 84 (465)
T ss_pred ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccc
Confidence 34578888888544 4442 3 37899999999998876655442 35668999999999999999
Q ss_pred cCCcccCCCChhhhhcCCCC-CCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q 008025 71 IEGYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV 149 (580)
Q Consensus 71 ~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaa 149 (580)
++|++||+||+.+.+ +++ ++|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||+
T Consensus 85 v~G~~tt~Gs~~~~~--~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAa 162 (465)
T PRK09201 85 VAGLTTLAGSKINRD--RPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAA 162 (465)
T ss_pred cCCcccCcCChhhcc--CCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence 999999999999986 566 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008025 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--- 226 (580)
Q Consensus 150 aVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--- 226 (580)
+||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 163 aVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~ 242 (465)
T PRK09201 163 AVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQ 242 (465)
T ss_pred HHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643211
Q ss_pred --------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHhCCcccccccccccccccCCchhhhhhhhhh
Q 008025 227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE 292 (580)
Q Consensus 227 --------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~ 292 (580)
..++.||++..+.+ ....++++.++++++++.| ++.+ .++ .|....
T Consensus 243 ~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L-~~~~--~v~--------~~~~~~------- 302 (465)
T PRK09201 243 ADRPAEPTAPLLDRGAEGLRIAVLGGYF--AQWADPEARAAVDRVAKAL-GATR--EVE--------LPEAAR------- 302 (465)
T ss_pred ccCCCcchhhhhccCCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHc-cCce--eec--------CCchhH-------
Confidence 11335666654432 1235789999999999987 3211 111 122111
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCC
Q 008025 293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP 372 (580)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a 372 (580)
....+..+...+....+..++......+++.++.++..+..++..+|.++++.|+.+++.|.++|+++|+||+||++.++
T Consensus 303 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a 382 (465)
T PRK09201 303 ARAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSA 382 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCC
Confidence 11112223334555556666666667899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC---ch-HHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 373 PKLGGKEM---LS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 373 p~~~~~~~---~~-~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
|+++.... .. ......+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.
T Consensus 383 p~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~~ 454 (465)
T PRK09201 383 PLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQQ 454 (465)
T ss_pred CcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHhh
Confidence 99975321 11 1112334458999999999999999998889999999999999999999999998853
No 4
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=4.4e-85 Score=682.28 Aligned_cols=406 Identities=26% Similarity=0.370 Sum_probs=331.7
Q ss_pred hhhhhhH-----HHHHHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCc
Q 008025 13 GLGLAGI-----LLMTKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGY 74 (580)
Q Consensus 13 ~~~l~~~-----~~~~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~ 74 (580)
+.+|+++ +++.|++ + ++.||.+|||++..+++++++++ +++..|||+||||+|||+|+++|+
T Consensus 2 ~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~ 81 (452)
T TIGR02715 2 IVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGL 81 (452)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCc
Confidence 4556666 4445543 3 37899999999988776655442 356679999999999999999999
Q ss_pred ccCCCChhhhhcCCCC-CCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025 75 VTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153 (580)
Q Consensus 75 ~tt~Gs~~~~~~~~~~-~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa 153 (580)
+||+||+.+.+ ++| .+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+
T Consensus 82 ~tt~Gs~~~~~--~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa 159 (452)
T TIGR02715 82 TTLAGAKINRD--LAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAA 159 (452)
T ss_pred eeCcCChhhcc--CCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHC
Confidence 99999999886 566 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-------
Q 008025 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------- 226 (580)
Q Consensus 154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------- 226 (580)
|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 160 g~~~~alGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p 239 (452)
T TIGR02715 160 GLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRP 239 (452)
T ss_pred CCCceEEeeCCCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987643211
Q ss_pred ----------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHhCCcccccccccccccccCCchhhhhhhhhhHHHH
Q 008025 227 ----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV 296 (580)
Q Consensus 227 ----------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 296 (580)
..++.||++..+.+ ....++++.++++++++.|. ..++ + ..|.... ....
T Consensus 240 ~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~-~~~~--------v--~~~~~~~-------~~~~ 299 (452)
T TIGR02715 240 AEPTVPLLPAGISGLRIAVLGGWF--QQNADPEALAAVGRVAKALG-ATTI--------V--ELPDAER-------ARAA 299 (452)
T ss_pred CcchhhhhhcCCCCCEEEEECccc--cCCCCHHHHHHHHHHHHhcC-Ceee--------e--cCCchHH-------HHHH
Confidence 12345666654432 12357899999999998873 2110 1 1222211 1111
Q ss_pred HHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCC
Q 008025 297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376 (580)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~ 376 (580)
+..+...+....+..++......+++.++.++..+..++..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+++
T Consensus 300 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~ 379 (452)
T TIGR02715 300 AFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIG 379 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhcCHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCc
Confidence 12223334444455666666678999999999999889999999999999999999999999999999999999999987
Q ss_pred CCCC--c--hHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 377 GKEM--L--SEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 377 ~~~~--~--~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
.... . .......+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~ 447 (452)
T TIGR02715 380 QETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ 447 (452)
T ss_pred ccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5311 1 11112234458999999999999999999889999999999999999999999998864
No 5
>PRK05962 amidase; Validated
Probab=100.00 E-value=1.5e-84 Score=672.00 Aligned_cols=397 Identities=24% Similarity=0.354 Sum_probs=328.5
Q ss_pred hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCC-CCChHHHHH
Q 008025 28 KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVST 99 (580)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~ 99 (580)
+++||.+|||++...+.++++++ .++..|||+||||+|||+|+|+|++||+||+.+.+ +++ .+|+++|+|
T Consensus 9 ~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~~~dA~vV~r 86 (424)
T PRK05962 9 AARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRD--APPAGADALIVQR 86 (424)
T ss_pred HhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhc--CCCCcCChHHHHH
Confidence 37899999999988776554432 35668999999999999999999999999999886 566 689999999
Q ss_pred HHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccc
Q 008025 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILG 179 (580)
Q Consensus 100 l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~G 179 (580)
||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||
T Consensus 87 L~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G 166 (424)
T PRK05962 87 LRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVG 166 (424)
T ss_pred HHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhhHhhCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc----CCCCceEEEccchhhhcCCChhHHHHHHH
Q 008025 180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVI 255 (580)
Q Consensus 180 lkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~ 255 (580)
||||+||+|+.|++|+++++|++|||+|+++|++.+++++.+.+..+ ...+.||++..+.+ ....++++.++++
T Consensus 167 lKPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~ 244 (424)
T PRK05962 167 FKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEPDVAAAFE 244 (424)
T ss_pred eecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987654321 22445676665432 2235789999999
Q ss_pred HHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhc
Q 008025 256 KSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333 (580)
Q Consensus 256 ~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 333 (580)
++++.|. |++|++ ++ .|.+..... .......+...+....+..|+......+++.++.++..+..
T Consensus 245 ~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 311 (424)
T PRK05962 245 ASLAALEKAGARIAD-LA--------IDDLIARLA----EATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIK 311 (424)
T ss_pred HHHHHHHHCCCEEEE-ec--------cchHHHHHH----HHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhccC
Confidence 9999886 776643 12 122110000 00001122333444455666666667899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHH---HHHHhhhhhcccccCCceeeeeCcC
Q 008025 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGY 410 (580)
Q Consensus 334 ~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~~~n~~g~P~~~~P~~~ 410 (580)
++..+|.++++.|..+++.+.++|+++|+||+||+|.++|+++....+...+ ...++.||.++|++|+|+++||++.
T Consensus 312 ~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~ 391 (424)
T PRK05962 312 VPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG 391 (424)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC
Confidence 9999999999999999999999999999999999999999987643222112 2224458999999999999999985
Q ss_pred CCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 411 ~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
+|+|+|+|+++++++|..+++++..+|+.+.
T Consensus 392 -~glPvGlqlvg~~~~D~~lL~~a~~le~~l~ 422 (424)
T PRK05962 392 -MALPAGLMLTARNGSDRRLLAAAASVEKLLE 422 (424)
T ss_pred -CCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 6999999999999999999999999998764
No 6
>PRK07487 amidase; Provisional
Probab=100.00 E-value=2e-84 Score=679.57 Aligned_cols=417 Identities=22% Similarity=0.233 Sum_probs=334.4
Q ss_pred hhHHHHhhhhhhHHHH-----HHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008025 7 NLWVLLGLGLAGILLM-----TKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (580)
Q Consensus 7 ~~~~~~~~~l~~~~~~-----~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~ 68 (580)
++..+|+.+|++++.. .|++ + +++||.+|||++...|+++++++ .++..|||+||||+|||+
T Consensus 4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~ 83 (469)
T PRK07487 4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVN 83 (469)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEecc
Confidence 4677789999998554 4443 3 37899999999988776555432 355679999999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (580)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa 148 (580)
|+|+|++||+||+.+.+ +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus 84 ~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsA 161 (469)
T PRK07487 84 VDQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAA 161 (469)
T ss_pred cccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence 99999999999999987 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcc----cC-CCCCcccccccCHHHHHHHHHHhcCCC
Q 008025 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----IS-TSLDTVGWFARDPKILRHVGHVLLQLP 223 (580)
Q Consensus 149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p----~~-~sld~~G~~ar~~~d~~~v~~~l~~~~ 223 (580)
||||+|++|+|+|||||||||||||||||||||||+||+|+.|+++ ++ .++|++|||+|+++|++.+++++.+.+
T Consensus 162 aAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d 241 (469)
T PRK07487 162 AAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPD 241 (469)
T ss_pred HHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999763 33 478999999999999999999987543
Q ss_pred ccc----------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhh
Q 008025 224 FAA----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNG 291 (580)
Q Consensus 224 ~~~----------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~ 291 (580)
..+ ...+.||++..+.+. ...++++.++++++++.|. |++|++ + ...|.+...
T Consensus 242 ~~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~-------~~~~~~~~~----- 306 (469)
T PRK07487 242 PRDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGWTVEE-V-------DDTPPLREA----- 306 (469)
T ss_pred CCCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCEEEe-c-------CCCCchHHH-----
Confidence 221 124457776654331 2357899999999999986 666532 1 012332211
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHhh-CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCC
Q 008025 292 ELKNVMRLIQRYEFKNNHNEWIESV-KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY 370 (580)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~ 370 (580)
...+..+...+....+..++... .+.+.+.++..+..+..++..+|.++++.|+.+++.+.++|+++|+||+||+|.
T Consensus 307 --~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~ 384 (469)
T PRK07487 307 --AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYPLLLMPVSAE 384 (469)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 11222223334444444444432 244666777777778889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHH--HHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 371 PPPKLGGKEMLSEDYQN--RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 371 ~ap~~~~~~~~~~~~~~--~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
+||+++........+.. ....+|.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.+.
T Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~~~~ 458 (469)
T PRK07487 385 LPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEARGG 458 (469)
T ss_pred CCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHHhhC
Confidence 99998753222222211 1112577899999999999999989999999999999999999999999987654
No 7
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-84 Score=675.99 Aligned_cols=413 Identities=26% Similarity=0.360 Sum_probs=333.5
Q ss_pred HHhhhhhhHHH-----HHHHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccC
Q 008025 11 LLGLGLAGILL-----MTKKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIE 72 (580)
Q Consensus 11 ~~~~~l~~~~~-----~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~ 72 (580)
+++.+|+++++ +.|++ +| +.|+ +|||++..+++++++++ .++..|||+||||+|||+|+++
T Consensus 6 ~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~ 84 (452)
T PRK06102 6 KSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVA 84 (452)
T ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccC
Confidence 46777777744 44442 33 6686 89999988776555442 3567899999999999999999
Q ss_pred CcccCCCChhhhhcCCCC-CCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCC--CCCCCCCCchhHH
Q 008025 73 GYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAP--SQMPGGSSSGAAV 149 (580)
Q Consensus 73 g~~tt~Gs~~~~~~~~~~-~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~--~~~~GGSSgGsaa 149 (580)
|++||+||+.+.+ +++ .+||++|+|||++|||++||||||||+++.+|+|.+||+|+||||+ +|+||||||||||
T Consensus 85 G~~tt~Gs~~~~~--~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAa 162 (452)
T PRK06102 85 GSVTTAGSVVLAN--AAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAV 162 (452)
T ss_pred CCccCcCChhhcc--CCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHH
Confidence 9999999999886 455 7999999999999999999999999999999999999999999996 7999999999999
Q ss_pred HHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008025 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--- 226 (580)
Q Consensus 150 aVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--- 226 (580)
|||+|++|+|+||||||||||||+||||||||||+||+|+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 163 aVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~ 242 (452)
T PRK06102 163 AVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVR 242 (452)
T ss_pred HHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887653222
Q ss_pred -CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHH
Q 008025 227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 303 (580)
Q Consensus 227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 303 (580)
+..+.|+++..+.+. ...++++.++++++++.|. |++|++ ++ .|.+..... +......+...
T Consensus 243 ~~~~~~ri~~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~~~~~~~~~~ 307 (452)
T PRK06102 243 RPLAGLRLVVPETVVF--DDAEPGVRAAFEAAVERLQAAGALVER-QA--------FPAFQEILD----LIARHGWLVTA 307 (452)
T ss_pred cCCCCCEEEEecchhc--ccCCHHHHHHHHHHHHHHHhCCCEEEe-cC--------CccHHHHHH----HHHHHHHHHHH
Confidence 223456666544321 2357899999999999986 666532 22 233221111 00111222233
Q ss_pred HHhhhhHHHHHh-hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCch
Q 008025 304 EFKNNHNEWIES-VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS 382 (580)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~ 382 (580)
+.+..+..++.. ....+.+.++.++..+..++..+|.++.+.|..+++.+.++|+ +|+||+||+|.++|+++......
T Consensus 308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~ 386 (452)
T PRK06102 308 EAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADD 386 (452)
T ss_pred HHHHHHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCc
Confidence 444445555544 3457899999999999999999999999999999999999999 89999999999999987532111
Q ss_pred HHH---HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 383 EDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 383 ~~~---~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
..+ ...++.||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+.+.
T Consensus 387 ~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l~ 450 (452)
T PRK06102 387 DLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVIR 450 (452)
T ss_pred hhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 111 22344589999999999999999986 7999999999999999999999999987663
No 8
>PRK08310 amidase; Provisional
Probab=100.00 E-value=1.2e-83 Score=659.01 Aligned_cols=387 Identities=39% Similarity=0.658 Sum_probs=323.4
Q ss_pred CCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEec
Q 008025 32 QDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKT 111 (580)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt 111 (580)
+.+||||...+. ...++..|||+||||+|||+|+++|++||+||+.|.+...++++|+++|+|||++|||++|||
T Consensus 5 ~~~~a~~~~~~~-----~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GKT 79 (395)
T PRK08310 5 DPFNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKT 79 (395)
T ss_pred CccccccccCCC-----CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEec
Confidence 678999987543 122467899999999999999999999999999985433577899999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCC
Q 008025 112 VVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMG 191 (580)
Q Consensus 112 ~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G 191 (580)
|||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||+|+.|
T Consensus 80 n~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~G 159 (395)
T PRK08310 80 QTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEG 159 (395)
T ss_pred cchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCccccc
Q 008025 192 IIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKH 269 (580)
Q Consensus 192 ~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~ 269 (580)
+.|+++++|++|||+|+++|++.+++++.+.+..+...+.++.+..+.+ ...++++.++++++++.|+ +.++++
T Consensus 160 ~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~g~vv~- 235 (395)
T PRK08310 160 VMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHLGPAKP- 235 (395)
T ss_pred CcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhCCceee-
Confidence 9999999999999999999999999998875543333356777765432 2257899999999999985 223322
Q ss_pred ccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008025 270 ENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM 349 (580)
Q Consensus 270 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~ 349 (580)
++.. ...+.. +...+..+...+.+..+..+++.....+++.++.+++.+..++..+|.++.+.|+.+
T Consensus 236 ~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~ 302 (395)
T PRK08310 236 ASVP------PLSLDE-------WYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAAF 302 (395)
T ss_pred ecCC------cccHHH-------HHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 1110 001111 112222333344455566666666677999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChH
Q 008025 350 RSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRF 429 (580)
Q Consensus 350 ~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ 429 (580)
++.+.++|+++|+||+||++.+||+++........+...++.||.++|++|+|+++||++..+|+|+|+|+++++++|..
T Consensus 303 ~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQivg~~~~D~~ 382 (395)
T PRK08310 303 ARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRS 382 (395)
T ss_pred HHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEEECCCCCHHH
Confidence 99999999999999999999999998765333333333445689999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008025 430 LLDTVQNMYAS 440 (580)
Q Consensus 430 ll~la~~le~~ 440 (580)
+++++..+|++
T Consensus 383 lL~~a~~le~~ 393 (395)
T PRK08310 383 LLALAQTIAAA 393 (395)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 9
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=3.5e-84 Score=678.03 Aligned_cols=415 Identities=20% Similarity=0.237 Sum_probs=334.3
Q ss_pred chhHHHHhhhhhhHHHH-----HHHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeec
Q 008025 6 ANLWVLLGLGLAGILLM-----TKKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD 67 (580)
Q Consensus 6 ~~~~~~~~~~l~~~~~~-----~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD 67 (580)
+++..+++.+|+++++. .|++ +| +.||.+|||++...+.++++++ .+...|||+||||+|||
T Consensus 2 ~~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD 81 (466)
T PRK06169 2 TDLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKD 81 (466)
T ss_pred cchhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEec
Confidence 35667788898888554 4443 33 7899999999988776554432 35567999999999999
Q ss_pred ccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 008025 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147 (580)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGs 147 (580)
+|+++|++||+||+.+.+. .++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+||||||||
T Consensus 82 ~~~v~G~~tt~Gs~~~~~~-~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 160 (466)
T PRK06169 82 IFLTRGWPTLRGSRAIDAD-GPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGA 160 (466)
T ss_pred ccccCCcccCccChhhccC-CCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHH
Confidence 9999999999999998852 444799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008025 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (580)
Q Consensus 148 aaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~- 226 (580)
|||||+|++|+|+|||||||||+|||||||||||||+||+|+.|+.|++ ++|++|||+|+++|+..+++++.+.+..+
T Consensus 161 AaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~ 239 (466)
T PRK06169 161 AAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDW 239 (466)
T ss_pred HHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999998886 89999999999999999999987543211
Q ss_pred ----------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhh
Q 008025 227 ----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHK 288 (580)
Q Consensus 227 ----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~ 288 (580)
..++.||++..+.. ....++++.++++++++.|. |++|++ ++ +++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~-- 305 (466)
T PRK06169 240 SALPPPTTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALGARVEE-VD---------PGFSDP-- 305 (466)
T ss_pred cccCCCCcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcCCEEEE-eC---------CCcchH--
Confidence 12345666654332 12357899999999999986 666532 11 111111
Q ss_pred hhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCC
Q 008025 289 TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 368 (580)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~ 368 (580)
...+..+...+....+..+.......+++.++.+++.+..++..+|.++.+.|+.+++.|.++|+++|+||+||+
T Consensus 306 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~ 380 (466)
T PRK06169 306 -----VEAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTL 380 (466)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCC
Confidence 011111111222222333334445678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCch--HHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHHH
Q 008025 369 AYPPPKLGGKEMLS--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (580)
Q Consensus 369 ~~~ap~~~~~~~~~--~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~l 441 (580)
|.+||+++...... ......+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+..
T Consensus 381 ~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~~ 456 (466)
T PRK06169 381 PIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQAL 456 (466)
T ss_pred CCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhhc
Confidence 99999987532111 11112334589999999999999999986 799999999999999999999999998653
No 10
>PRK07056 amidase; Provisional
Probab=100.00 E-value=5.3e-84 Score=673.72 Aligned_cols=413 Identities=26% Similarity=0.351 Sum_probs=338.2
Q ss_pred HhhhhhhHHH-----HHHHH----hh--hccCC-ccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccC
Q 008025 12 LGLGLAGILL-----MTKKL----KK--NIKQD-FGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIE 72 (580)
Q Consensus 12 ~~~~l~~~~~-----~~~~~----~~--~~~~~-~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~ 72 (580)
++.+|+++++ +.|++ +| ++||. +|||++...++++++++ .+...|||+||||+|||+|+++
T Consensus 7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~ 86 (454)
T PRK07056 7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVA 86 (454)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccC
Confidence 6777777754 44442 33 67874 99999988776555432 3566799999999999999999
Q ss_pred CcccCCCChhhhhcCCCC-CCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCC----CCCCCCCCCCchh
Q 008025 73 GYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA----APSQMPGGSSSGA 147 (580)
Q Consensus 73 g~~tt~Gs~~~~~~~~~~-~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~----~~~~~~GGSSgGs 147 (580)
|++||+||+.+.+ +++ ++||++|+|||++|||++||||||||+++.+|+|.+||+|+||| |++|+||||||||
T Consensus 87 G~~tt~Gs~~~~~--~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGs 164 (454)
T PRK07056 87 GQVTRAGSRVLAD--APPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGA 164 (454)
T ss_pred CCccCCCChhhcc--CCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHH
Confidence 9999999999986 566 69999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008025 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (580)
Q Consensus 148 aaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~- 226 (580)
|||||+|++|+|+|||||||||+||+||||||||||+||+|+.|++|+++++|++|||+|+++|++.+++++.+.++.+
T Consensus 165 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~ 244 (454)
T PRK07056 165 AVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVP 244 (454)
T ss_pred HHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988765433
Q ss_pred ---CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHH
Q 008025 227 ---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ 301 (580)
Q Consensus 227 ---~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 301 (580)
+.++.||++..+.+ ....++++.++++++++.|. |++|++ ++ .|.+..... +. ....+.
T Consensus 245 ~~~~~~~lrig~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~-~~~~~~ 308 (454)
T PRK07056 245 AARPLEGLRLAVPTTVV--LDGLDATVAAAFERALKRLSAAGAIIEE-IA--------FPELAELAE----IN-AKGGFS 308 (454)
T ss_pred ccccccCcEEEEcchhh--ccCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHHHH----HH-HhhhHH
Confidence 22445677665432 12357899999999999986 776632 22 222221111 00 001122
Q ss_pred HHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc
Q 008025 302 RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML 381 (580)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~ 381 (580)
..+.+..+..++......+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++.....
T Consensus 309 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~ 388 (454)
T PRK07056 309 AAESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEAD 388 (454)
T ss_pred HHHHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCccccccc
Confidence 23444445556666667899999999999999999999999999999999999999999999999999999999764221
Q ss_pred hHHHH---HHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 382 SEDYQ---NRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 382 ~~~~~---~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
...+. ..++.||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.+.
T Consensus 389 ~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l~ 452 (454)
T PRK07056 389 DAAFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVLR 452 (454)
T ss_pred chhhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 22221 12334899999999999999999888999999999999999999999999997663
No 11
>PRK07235 amidase; Provisional
Probab=100.00 E-value=1.4e-82 Score=666.87 Aligned_cols=400 Identities=22% Similarity=0.270 Sum_probs=320.4
Q ss_pred hccCCccceeeccccCCCCCC------CCCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHh
Q 008025 29 NIKQDFGAFIEKLQLLPPPQP------LPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVE 102 (580)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~------~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~ 102 (580)
.+++..|++.+...+.....+ .++...|||+||||+|||||+++|+|||+||+.+.+ ++|.+||++|+||++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~--~~p~~DA~vV~rL~~ 130 (502)
T PRK07235 53 PVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG--FVPSFDATVVTRLLD 130 (502)
T ss_pred ccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC--CCCCCCHHHHHHHHH
Confidence 778889999887766554332 246778999999999999999999999999999987 789999999999999
Q ss_pred CCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCcccccc
Q 008025 103 GGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRP 182 (580)
Q Consensus 103 aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkP 182 (580)
|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+||||||||||||+|||||||||
T Consensus 131 AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKP 210 (502)
T PRK07235 131 AGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKP 210 (502)
T ss_pred CCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc------------------CCCCceEEEccchhhhcC
Q 008025 183 SYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------------QRSPRQIIIADDCFELLK 244 (580)
Q Consensus 183 t~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------------------~~~~~~l~i~~~~~~~~~ 244 (580)
|+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+ ..++.||++..+.+. ..
T Consensus 211 T~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~-~~ 289 (502)
T PRK07235 211 THGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRGVKGLKIGILREGFG-LP 289 (502)
T ss_pred CCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccCCcCCEEEEeccccC-CC
Confidence 99999999999999999999999999999999999987643221 123346666554332 12
Q ss_pred CChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhH-HH-HHH-HHHH------------HHHhh
Q 008025 245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL-KN-VMR-LIQR------------YEFKN 307 (580)
Q Consensus 245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~-~~-~~~-~~~~------------~~~~~ 307 (580)
..++++.++++++++.|+ |++|++ +++. ........+..+ .+ ... .+.. .+...
T Consensus 290 ~~~~~v~~a~~~a~~~L~~~G~~V~~-v~~p--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 360 (502)
T PRK07235 290 NSEPEVDEAVRAAAKRLEDLGATVEE-VSIP--------LHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLD 360 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC--------chhhHHHHHHHHHHHHHHHHhhhccccccccccccchhHHH
Confidence 247899999999999986 776632 2222 111000000000 00 000 0000 01111
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchH
Q 008025 308 NHNEWIESVKPALDPDISAEIGEML----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 383 (580)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~----~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~ 383 (580)
.+..+...+...+++.++.++..|. .++..+|.++++.|+.+++.++++|+++|+||+||+|.+||+++....+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~ 440 (502)
T PRK07235 361 AFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASRE 440 (502)
T ss_pred HHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchH
Confidence 1222233445678999999988775 467889999999999999999999999999999999999999976533333
Q ss_pred HHHH---HHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 384 DYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 384 ~~~~---~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
.+.. .++.||.+||++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.
T Consensus 441 ~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A~~~E~~ 500 (502)
T PRK07235 441 EYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAAAAFEAS 500 (502)
T ss_pred HHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 3322 23448999999999999999999999999999999999999999999998864
No 12
>PRK07042 amidase; Provisional
Probab=100.00 E-value=3.4e-83 Score=670.28 Aligned_cols=413 Identities=17% Similarity=0.140 Sum_probs=331.0
Q ss_pred hhHHHHhhhhhhHHHH-----HHHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008025 7 NLWVLLGLGLAGILLM-----TKKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (580)
Q Consensus 7 ~~~~~~~~~l~~~~~~-----~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~ 68 (580)
++...++.+|+++++. .|++ +| +.||.+|||++...|.++++++ ++...|||+||||+|||+
T Consensus 3 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~ 82 (464)
T PRK07042 3 ALHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKEN 82 (464)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcc
Confidence 4566788888888544 4442 33 7899999999988776555443 356789999999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (580)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa 148 (580)
|+|+|++||+||+.+.+ +++++|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus 83 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 160 (464)
T PRK07042 83 IATRGVPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAG 160 (464)
T ss_pred cccCCcccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHH
Confidence 99999999999999876 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (580)
Q Consensus 149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-- 226 (580)
||||+|++|+|+|||||||||||||||||||||||+||||..|.. +.|++|||+|+++|++.+++++.+.+..+
T Consensus 161 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~ 236 (464)
T PRK07042 161 AAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGT 236 (464)
T ss_pred HHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999999999999998842 34899999999999999999987543211
Q ss_pred --------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhh
Q 008025 227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN 290 (580)
Q Consensus 227 --------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~ 290 (580)
..++.||++..+... ....++++.++++++++.|. |++|++ ++ .+....+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~--- 303 (464)
T PRK07042 237 SLPPQDIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGAIVEP-VP--------PFLTRAML--- 303 (464)
T ss_pred ccCCCCcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CchhHHHH---
Confidence 113456666544321 12357899999999999986 776632 11 11111111
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCC
Q 008025 291 GELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY 370 (580)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~ 370 (580)
..+..+...+.+..+..+.......+.+.++.++..+..++..+|.++...|..+++.+.++|+++|+||+||+|.
T Consensus 304 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~ 379 (464)
T PRK07042 304 ----DGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPV 379 (464)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 1111111123333344444555667889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCc-hHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 371 PPPKLGGKEML-SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 371 ~ap~~~~~~~~-~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
+||+++..... ........+.||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+...
T Consensus 380 ~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~~ 453 (464)
T PRK07042 380 PAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWRG 453 (464)
T ss_pred CCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 99998743211 101111223589999999999999999986 7999999999999999999999999987643
No 13
>PRK07486 amidase; Provisional
Probab=100.00 E-value=7e-83 Score=671.39 Aligned_cols=418 Identities=22% Similarity=0.240 Sum_probs=329.9
Q ss_pred chhHHHHhhhhhhHHHH-----HHHH----h--hhccCCccceeeccccC-CCCCC-------CCCCCCCCCCCceeeee
Q 008025 6 ANLWVLLGLGLAGILLM-----TKKL----K--KNIKQDFGAFIEKLQLL-PPPQP-------LPPKAPHPLTGLSFAVS 66 (580)
Q Consensus 6 ~~~~~~~~~~l~~~~~~-----~~~~----~--~~~~~~~~a~~~~~~~~-~~~~~-------~~~~~~gpl~Gvp~~vK 66 (580)
-++..+++.+|+.+++. .|++ + ++.||.+|||++...++ +++++ +.+...|||+||||+||
T Consensus 7 ~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vK 86 (484)
T PRK07486 7 DPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPK 86 (484)
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEe
Confidence 35566789999888554 4442 3 37899999999985532 22332 23566799999999999
Q ss_pred cccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 008025 67 DLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSG 146 (580)
Q Consensus 67 D~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgG 146 (580)
|+|+++|++||+||+.+++ +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||
T Consensus 87 D~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 164 (484)
T PRK07486 87 DLAPTKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGG 164 (484)
T ss_pred cccccCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHH
Confidence 9999999999999999987 78999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCc-ccCCCCCcccccccCHHHHHHHHHHhcCCCcc
Q 008025 147 AAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII-PISTSLDTVGWFARDPKILRHVGHVLLQLPFA 225 (580)
Q Consensus 147 saaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~-p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~ 225 (580)
||||||+|++|+|+||||||||||||+||||||||||+||||+.|.+ |+++++|++|||+|+++|+..+++++.+.+..
T Consensus 165 sAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~ 244 (484)
T PRK07486 165 AAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPR 244 (484)
T ss_pred HHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999998754 78999999999999999999999998754321
Q ss_pred c-----------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhh
Q 008025 226 A-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF 286 (580)
Q Consensus 226 ~-----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~ 286 (580)
+ ..++.||++..+.+. ....++++.++++++++.|. |++|++ .. +.+..
T Consensus 245 d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~- 312 (484)
T PRK07486 245 DPLSLAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELGCDVEA-AL---------PAFPP- 312 (484)
T ss_pred CCccccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------CCcch-
Confidence 1 123456666544321 11247899999999999986 666532 11 11110
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhHHHHH--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEE
Q 008025 287 HKTNGELKNVMRLIQRYEFKNNHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILV 364 (580)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll 364 (580)
.. ..+.+..+...+........+. .....+++.++.++..+..++..+|.++.+.|..+++.+.++|+++|+||
T Consensus 313 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll 388 (484)
T PRK07486 313 ER----LWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERYDFLA 388 (484)
T ss_pred HH----HHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 00 0111111111111111222221 13356889999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCCC-----CchHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHH
Q 008025 365 TPTTAYPPPKLGGKE-----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (580)
Q Consensus 365 ~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le 438 (580)
+||++.+||+++... .........++.+|.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|
T Consensus 389 ~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a~~le 468 (484)
T PRK07486 389 LPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHAYE 468 (484)
T ss_pred cCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999886421 00111122334478899999999999999985 799999999999999999999999998
Q ss_pred HHH
Q 008025 439 ASL 441 (580)
Q Consensus 439 ~~l 441 (580)
+..
T Consensus 469 ~~~ 471 (484)
T PRK07486 469 QAT 471 (484)
T ss_pred hcc
Confidence 653
No 14
>PRK12470 amidase; Provisional
Probab=100.00 E-value=6.8e-83 Score=665.98 Aligned_cols=412 Identities=22% Similarity=0.272 Sum_probs=325.8
Q ss_pred hhHHHHhhhhhhHH-----HHHHHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008025 7 NLWVLLGLGLAGIL-----LMTKKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (580)
Q Consensus 7 ~~~~~~~~~l~~~~-----~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~ 68 (580)
++..+++.+|++++ ++.|++ +| +.||.+|||++...++++++++ .+... ||+||||+|||+
T Consensus 5 ~~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~ 83 (462)
T PRK12470 5 DLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDD 83 (462)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecC
Confidence 45667899999995 444543 33 7899999999988776555443 23445 999999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (580)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa 148 (580)
|+++|++||+||+.+ . +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus 84 ~~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 160 (462)
T PRK12470 84 VDVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSA 160 (462)
T ss_pred cccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHH
Confidence 999999999999985 3 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (580)
Q Consensus 149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-- 226 (580)
||||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 161 aAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~ 240 (462)
T PRK12470 161 AAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGE 240 (462)
T ss_pred HHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887533211
Q ss_pred -------CCCCceEEEccchhh-hcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHH
Q 008025 227 -------QRSPRQIIIADDCFE-LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV 296 (580)
Q Consensus 227 -------~~~~~~l~i~~~~~~-~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 296 (580)
...+.||++..+.+. .....++++.++++++++.|. |++|++ ++ |.+...... .+...
T Consensus 241 ~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~~~--~~~~~ 308 (462)
T PRK12470 241 FVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVV-RD---------PDYPAATYA--NYLPR 308 (462)
T ss_pred hhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEEE-eC---------CCchhHHHH--HHHHH
Confidence 124456666544321 112347899999999999986 766532 11 111100000 00000
Q ss_pred HHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCC
Q 008025 297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376 (580)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~ 376 (580)
+ . ...... .........+++.++.++..|..++..+|.....++..+++.|.++|+++|+||+||+|.+||+++
T Consensus 309 ~--~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~ 382 (462)
T PRK12470 309 F--F---RGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIG 382 (462)
T ss_pred H--H---HHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCC
Confidence 0 0 000000 111223456889999999999999998888555556699999999999999999999999999987
Q ss_pred CCCCc--hHHH--HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 377 GKEML--SEDY--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 377 ~~~~~--~~~~--~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
..... .+.+ ...+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~ 451 (462)
T PRK12470 383 AYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451 (462)
T ss_pred ccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence 54211 1111 12334589999999999999999986 79999999999999999999999999865
No 15
>PRK06170 amidase; Provisional
Probab=100.00 E-value=1.1e-82 Score=671.70 Aligned_cols=416 Identities=21% Similarity=0.269 Sum_probs=329.5
Q ss_pred chhHHHHhhhhhhHHHHH-----HHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeec
Q 008025 6 ANLWVLLGLGLAGILLMT-----KKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD 67 (580)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~-----~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD 67 (580)
.++..+++.+|+++++.+ |++ +| ++||.+|||++...++++++|+ .+ ..|||+||||+|||
T Consensus 7 ~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g-~~gpL~GvPv~VKD 85 (490)
T PRK06170 7 DEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG-ERGPLLGIPVTVKE 85 (490)
T ss_pred chhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcC-CCCCcCCceEEEec
Confidence 467777899999995544 442 33 7899999999988776655442 23 46999999999999
Q ss_pred ccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 008025 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147 (580)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGs 147 (580)
+|+|+|++||+||+.+.+ +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+||||||||
T Consensus 86 ~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 163 (490)
T PRK06170 86 SFNVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGS 163 (490)
T ss_pred ccccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHHH
Confidence 999999999999999987 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcc-----c--CCCCCcccccccCHHHHHHHHHHhc
Q 008025 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP-----I--STSLDTVGWFARDPKILRHVGHVLL 220 (580)
Q Consensus 148 aaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p-----~--~~sld~~G~~ar~~~d~~~v~~~l~ 220 (580)
|||||+|++|+|+|||||||||||||||||||||||+||||+.|++| + +.++|++|||+|+++|++.+++++.
T Consensus 164 AaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~l~ 243 (490)
T PRK06170 164 AAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVMA 243 (490)
T ss_pred HHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988 4 3368999999999999999999987
Q ss_pred CCCccc---------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCch
Q 008025 221 QLPFAA---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSL 283 (580)
Q Consensus 221 ~~~~~~---------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~ 283 (580)
+.+..+ ..++.||++..+.+ ....++++.++++++++.|. |++|++ ++. ..|.+
T Consensus 244 g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~------~~~~~ 314 (490)
T PRK06170 244 GPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHP--LLPTDAAVRAAIERLAAALADAGARVVR-HSP------LLPDL 314 (490)
T ss_pred CCCccccccccccCCCcccccccCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHCCCEEEE-cCC------CCCch
Confidence 643221 11345676655433 12357899999999999986 776643 110 11222
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhh-HHHHHh------hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhh
Q 008025 284 KGFHKTNGELKNVMRLIQRYEFKNNH-NEWIES------VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSL 356 (580)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~ 356 (580)
.... ..+..+...+....+ ..+... ....+.+.++.++..+..++..+|.++.+.|..+++.|.++
T Consensus 315 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~ 387 (490)
T PRK06170 315 AESA-------RLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAAREELRAAWRRF 387 (490)
T ss_pred HHHH-------HHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 111111111111111 011111 12346677777788888899999999999999999999999
Q ss_pred cCCCCEEEEcCCCCCCCCCCCCCCc------hH----HHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccC
Q 008025 357 LKDDGILVTPTTAYPPPKLGGKEML------SE----DYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHG 425 (580)
Q Consensus 357 ~~~~Dvll~Pt~~~~ap~~~~~~~~------~~----~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~ 425 (580)
|+++|+||+||++.+||+++..... .+ .+ ...+.||.++|++|+|+++||++.. +|+|+|+|++++++
T Consensus 388 ~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlig~~~ 466 (490)
T PRK06170 388 FAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPY-WDQLVWAGLATLPGLPATAIPIGLSATGLPVGVQIVGPAL 466 (490)
T ss_pred HhcCCEEEeCCCCCCCCCCCccccccccccccCCcccch-hhhhhhcceecccCCCeEEEECCcCCCCCceeEEEecCCC
Confidence 9999999999999999998753110 00 11 1223589999999999999999986 79999999999999
Q ss_pred CChHHHHHHHHHHHHH
Q 008025 426 GDRFLLDTVQNMYASL 441 (580)
Q Consensus 426 ~d~~ll~la~~le~~l 441 (580)
+|..+++++..+|+.+
T Consensus 467 ~D~~LL~~a~~lE~~~ 482 (490)
T PRK06170 467 EDRTPLRLAELLEEEF 482 (490)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999998764
No 16
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=2.8e-82 Score=664.80 Aligned_cols=413 Identities=25% Similarity=0.343 Sum_probs=328.9
Q ss_pred hhHHHHhhhhhhHHHHH-----HHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008025 7 NLWVLLGLGLAGILLMT-----KKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (580)
Q Consensus 7 ~~~~~~~~~l~~~~~~~-----~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~ 68 (580)
++..+++.+|+++++.+ |++ +| +.| .+|||++...++++++++ .+...| |+||||+|||+
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD~ 84 (472)
T PRK07488 7 DVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKDN 84 (472)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEcc
Confidence 57788999999995544 443 33 445 699999988776554432 244456 99999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (580)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa 148 (580)
|+|+|++||+||+.+.+ +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus 85 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 162 (472)
T PRK07488 85 INTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTA 162 (472)
T ss_pred cccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Confidence 99999999999999987 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (580)
Q Consensus 149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-- 226 (580)
|+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+...
T Consensus 163 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~~ 242 (472)
T PRK07488 163 AAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPAP 242 (472)
T ss_pred HHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred -CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHH
Q 008025 227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 303 (580)
Q Consensus 227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 303 (580)
+.++.||++..+.+ ....++++.++++++++.|. |++|++ +++ |.+.++.. .....+...
T Consensus 243 ~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~------~~~~~~~~~ 305 (472)
T PRK07488 243 VALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGVTFVE-LDL--------PGLHELNE------AVGFPIALY 305 (472)
T ss_pred cCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCCEEEe-eCC--------cCHHHHhh------hHHHHHHHH
Confidence 23456777765432 22347899999999999986 777642 222 22211100 001112222
Q ss_pred HHhhhhHHHHHhhCC----------CCCHHHHHHHHH---hhcCCHHHHHHHHHH-HHHHHHHHHhhcC--CCCEEEEcC
Q 008025 304 EFKNNHNEWIESVKP----------ALDPDISAEIGE---MLEISETVIENCKSI-RNEMRSAISSLLK--DDGILVTPT 367 (580)
Q Consensus 304 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---g~~~s~~~~~~a~~~-r~~~~~~~~~~~~--~~Dvll~Pt 367 (580)
+....+..|+..... ..++.++.+++. +..++..+|.++++. |+.+++.+.++|+ ++|+||+||
T Consensus 306 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~Pt 385 (472)
T PRK07488 306 EALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFPT 385 (472)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeCC
Confidence 333334444332221 225777666543 346789999999888 9999999999998 789999999
Q ss_pred CCCCCCCCCCCCC------chHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 368 TAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 368 ~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
+|.++|+++.... ....+ ..+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+.
T Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL~~A~~lE~~ 464 (472)
T PRK07488 386 TPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALERV 464 (472)
T ss_pred CCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHHHHHHHHHHh
Confidence 9999999976411 11222 2344589999999999999999986 79999999999999999999999999875
Q ss_pred H
Q 008025 441 L 441 (580)
Q Consensus 441 l 441 (580)
+
T Consensus 465 ~ 465 (472)
T PRK07488 465 L 465 (472)
T ss_pred h
Confidence 3
No 17
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=1e-82 Score=667.39 Aligned_cols=395 Identities=26% Similarity=0.346 Sum_probs=311.3
Q ss_pred hccCCccceeeccccCCCCCCCCCC--CCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCe
Q 008025 29 NIKQDFGAFIEKLQLLPPPQPLPPK--APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGAT 106 (580)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai 106 (580)
+.||.+|||++...++++++++... ..|||+||||+|||+|+|+|++||+||+.+++ +++.+|+++|+|||++|||
T Consensus 25 ~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~L~~aGAi 102 (460)
T TIGR00132 25 ANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YIPPYDATVIERLKQAGAL 102 (460)
T ss_pred HhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CCCCCchHHHHHHHHCCCE
Confidence 7899999999988776555443211 12899999999999999999999999999987 6888999999999999999
Q ss_pred EEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCc
Q 008025 107 CIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGA 186 (580)
Q Consensus 107 ~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~ 186 (580)
++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+||||||||||+||
T Consensus 103 i~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~ 182 (460)
T TIGR00132 103 IIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGR 182 (460)
T ss_pred EEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcchhhhHhcCceeECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEccchhhhcCCChhH
Q 008025 187 VSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADR 249 (580)
Q Consensus 187 v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-----------------~~~~~~l~i~~~~~~~~~~~~~~ 249 (580)
||+.|++|+++++|++|||+|+++|++.+++++.+.+..+ ..++.||++..+.+. ..+++
T Consensus 183 vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~---~~~~~ 259 (460)
T TIGR00132 183 VSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVGVVKEFSE---EMDKE 259 (460)
T ss_pred CCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCEEEEECcccc---cCCHH
Confidence 9999999999999999999999999999999987643211 123456666544332 24788
Q ss_pred HHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhh--HHHHHHHHHHHH---------HhhhhHHHHHh-
Q 008025 250 VVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRYE---------FKNNHNEWIES- 315 (580)
Q Consensus 250 ~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~- 315 (580)
+.++++++++.|. |++|++ +++ |.+......... ..+....+..+. ...++.+++..
T Consensus 260 v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (460)
T TIGR00132 260 VQEKFENALEVLEELGAEIVE-VSF--------PHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKT 330 (460)
T ss_pred HHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHHHHHHHHHHHHHHHHHHhccccccccccccccccHHHHHhhc
Confidence 9999999999886 776633 222 222211110000 000110010000 00112233332
Q ss_pred hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc-hHHHHHHH
Q 008025 316 VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SEDYQNRA 389 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~-~~~~~~~~ 389 (580)
....+++.++.++..+...+ ..+|.++++.|..+++.+.++|+++|+||+||++.+||+++..... ...+. .
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~--~ 408 (460)
T TIGR00132 331 RAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYL--S 408 (460)
T ss_pred chhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhc--c
Confidence 23457788888887665444 3448899999999999999999999999999999999999754221 11121 1
Q ss_pred hhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHH
Q 008025 390 FSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (580)
Q Consensus 390 ~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~ 439 (580)
..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+
T Consensus 409 ~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~ 459 (460)
T TIGR00132 409 DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ 459 (460)
T ss_pred cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence 1279999999999999999987 8999999999999999999999998874
No 18
>PRK06061 amidase; Provisional
Probab=100.00 E-value=3.2e-82 Score=664.58 Aligned_cols=415 Identities=23% Similarity=0.276 Sum_probs=327.3
Q ss_pred CccchhHHHHhhhhhhHHHH-----HHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceee
Q 008025 3 SQSANLWVLLGLGLAGILLM-----TKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFA 64 (580)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~-----~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~ 64 (580)
|-+-+.-.+++.+|+++++. .|++ + ++.||.+|||++...++++++++ ++. .+||+||||+
T Consensus 10 ~~~~~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~~pL~GvPv~ 88 (483)
T PRK06061 10 SGSGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGD-RLPLLGVPIA 88 (483)
T ss_pred cCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCC-CCCcCCCeEE
Confidence 33445566778888888554 4442 3 37899999999998876655443 122 3599999999
Q ss_pred eecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008025 65 VSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSS 144 (580)
Q Consensus 65 vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS 144 (580)
|||+|+++|++||+||+.. ..++++||++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||
T Consensus 89 vKD~~~v~G~~tt~Gs~~~---~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSS 165 (483)
T PRK06061 89 VKDDVDVAGVPTAFGTAGE---VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSS 165 (483)
T ss_pred EEcccccCCceecCCCccc---CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCCh
Confidence 9999999999999999842 1345799999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCc
Q 008025 145 SGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPF 224 (580)
Q Consensus 145 gGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~ 224 (580)
||||||||+|++|+|+||||||||||||+||||||||||+||||+.|+.|.+.++|++|||+|+++|++.+++++.+.+.
T Consensus 166 gGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~ 245 (483)
T PRK06061 166 GGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHP 245 (483)
T ss_pred HHHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999875432
Q ss_pred cc---------------CCCCceEEEccchhh--hcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhh
Q 008025 225 AA---------------QRSPRQIIIADDCFE--LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKG 285 (580)
Q Consensus 225 ~~---------------~~~~~~l~i~~~~~~--~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~ 285 (580)
.+ ..++.||++..+... .....++++.++++++++.|. |++|++ .+ |.+..
T Consensus 246 ~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~ 315 (483)
T PRK06061 246 GDRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVVP-AD---------PDYGL 315 (483)
T ss_pred CCCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------Cchhh
Confidence 11 113345665443211 112357899999999999986 676632 11 11110
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhHHHHHh--hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEE
Q 008025 286 FHKTNGELKNVMRLIQRYEFKNNHNEWIES--VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGIL 363 (580)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvl 363 (580)
... .. . .. .....+..+... ....+++.++.++..+..++..+|.++++.|+.+++.+.++|+++|+|
T Consensus 316 ~~~----~~-~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~l 385 (483)
T PRK06061 316 RLG----LN-F---LP--RSTAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVV 385 (483)
T ss_pred HHH----HH-H---HH--HHHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 000 00 0 00 000112222222 234678999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCch----HHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHH
Q 008025 364 VTPTTAYPPPKLGGKEMLS----EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (580)
Q Consensus 364 l~Pt~~~~ap~~~~~~~~~----~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le 438 (580)
|+||+|.+||+++...... ......+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|
T Consensus 386 l~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le 465 (483)
T PRK06061 386 LAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLE 465 (483)
T ss_pred EcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHH
Confidence 9999999999997632110 00111233489999999999999999986 799999999999999999999999998
Q ss_pred HHH
Q 008025 439 ASL 441 (580)
Q Consensus 439 ~~l 441 (580)
+..
T Consensus 466 ~~~ 468 (483)
T PRK06061 466 AVS 468 (483)
T ss_pred hhc
Confidence 764
No 19
>PRK06529 amidase; Provisional
Probab=100.00 E-value=7.3e-82 Score=663.32 Aligned_cols=412 Identities=17% Similarity=0.224 Sum_probs=321.1
Q ss_pred HHhhhhhhHHH-----HHHHH----hh--hccCCccceeeccccCCCCCCCCCC-CCCCCCCceeeeecc-cccCCcccC
Q 008025 11 LLGLGLAGILL-----MTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPK-APHPLTGLSFAVSDL-FDIEGYVTG 77 (580)
Q Consensus 11 ~~~~~l~~~~~-----~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~gpl~Gvp~~vKD~-~~~~g~~tt 77 (580)
+++.+|+++++ +.|++ +| +.||.+|||++...++++++++... ..+|||||||+|||+ ++|+|++||
T Consensus 4 ~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt 83 (482)
T PRK06529 4 KDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLST 83 (482)
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccC
Confidence 35677777744 44442 33 7899999999988776655544322 225999999999998 799999999
Q ss_pred CCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCc
Q 008025 78 FGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVD 157 (580)
Q Consensus 78 ~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~ 157 (580)
+||+.+++ +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|
T Consensus 84 ~Gs~~~~~--~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~ 161 (482)
T PRK06529 84 SGSRLFKN--YQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVA 161 (482)
T ss_pred cchHHhcC--CCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCc
Confidence 99999987 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcc-cccccCHHHHHHHHHHhcCCCccc----------
Q 008025 158 FSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV-GWFARDPKILRHVGHVLLQLPFAA---------- 226 (580)
Q Consensus 158 ~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~-G~~ar~~~d~~~v~~~l~~~~~~~---------- 226 (580)
+|+|||||||||+|||||||||||||+||||..+..+.+.+.|++ |||+|+++|++.+++++.+.+..+
T Consensus 162 ~aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~ 241 (482)
T PRK06529 162 LAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKE 241 (482)
T ss_pred eeeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccc
Confidence 999999999999999999999999999999987665556666666 799999999999999876532111
Q ss_pred ----C-CCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCC-chhhhhhhhhhHHHHHH
Q 008025 227 ----Q-RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP-SLKGFHKTNGELKNVMR 298 (580)
Q Consensus 227 ----~-~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p-~~~~~~~~~~~~~~~~~ 298 (580)
. ..+.||++..+.+. ....++++.++++++++.|. |++|++. + ..| .+... ...+.
T Consensus 242 ~~~~~~~~~lrIg~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~ev-~-------~~p~~~~~~-------~~~~~ 305 (482)
T PRK06529 242 SLFQSLQRPLKIAFYQRSPD-GSPVSLDAAKALKQAVTFLREQGHEVVEL-E-------EFPLDMTEV-------MRSYY 305 (482)
T ss_pred hhccccCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEc-C-------CCCCCHHHH-------HHHHH
Confidence 0 13446666544321 12357899999999999986 7766431 1 012 11111 11111
Q ss_pred HHHHHHHhhhhHHHHHhh-----CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC
Q 008025 299 LIQRYEFKNNHNEWIESV-----KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPP 373 (580)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap 373 (580)
.+...+....+..+.+.. ...+++.++.++..|..++..+|.++.+.|..+++.|.++|+++|+||+||++.+||
T Consensus 306 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~ 385 (482)
T PRK06529 306 IMNSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAP 385 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCC
Confidence 222223322233222111 224677787778888889999999999999999999999999999999999999999
Q ss_pred CCCCCCCch----------------------HHH--HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCCh
Q 008025 374 KLGGKEMLS----------------------EDY--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDR 428 (580)
Q Consensus 374 ~~~~~~~~~----------------------~~~--~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~ 428 (580)
+++...... ..+ ...+..||.++|++|+|+++||++.. +|+|+|+|+++++++|.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~ 465 (482)
T PRK06529 386 KHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGRED 465 (482)
T ss_pred CCCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHH
Confidence 987532110 011 11234589999999999999999986 79999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008025 429 FLLDTVQNMYAS 440 (580)
Q Consensus 429 ~ll~la~~le~~ 440 (580)
.+++++..+|+.
T Consensus 466 ~lL~~a~~le~~ 477 (482)
T PRK06529 466 LLLGIAEQFEAA 477 (482)
T ss_pred HHHHHHHHHHhc
Confidence 999999998854
No 20
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=3.6e-82 Score=663.17 Aligned_cols=394 Identities=24% Similarity=0.342 Sum_probs=310.5
Q ss_pred hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHH
Q 008025 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV 101 (580)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~ 101 (580)
+.||.+|||++...++++++++ .+. .|||+||||+|||+|+|+|++||+||+.+.+ ++|.+|+++|+|||
T Consensus 21 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~~Lr 97 (459)
T PRK00012 21 EVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILEN--YVPPYDATVVEKLK 97 (459)
T ss_pred HhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhcc--CCCCcchHHHHHHH
Confidence 7899999999988776555443 234 7999999999999999999999999999987 78899999999999
Q ss_pred hCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccc
Q 008025 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR 181 (580)
Q Consensus 102 ~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~Glk 181 (580)
++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+|+||||||||||||+||||||||
T Consensus 98 ~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGvvG~K 177 (459)
T PRK00012 98 AAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLK 177 (459)
T ss_pred HCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCCCCccchhHHHcCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEccchhhhcC
Q 008025 182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLK 244 (580)
Q Consensus 182 Pt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-----------------~~~~~~l~i~~~~~~~~~ 244 (580)
||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+ ..++.||++..+.+ ..
T Consensus 178 PT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~ 255 (459)
T PRK00012 178 PTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYF--GE 255 (459)
T ss_pred CCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhcccccccEEEEEcccc--cc
Confidence 999999999999999999999999999999999999987543211 12344666655432 12
Q ss_pred CChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhH--HHHHHHHHHHH---------HhhhhHH
Q 008025 245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL--KNVMRLIQRYE---------FKNNHNE 311 (580)
Q Consensus 245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~ 311 (580)
..++++.++++++++.|. |++|++ +++ |.+......+..+ .+....+..+. ....+..
T Consensus 256 ~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
T PRK00012 256 GLDPEVKEAVEAAIKKLEDLGAEIVE-VSL--------PHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEE 326 (459)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHH
Confidence 347899999999999886 776642 222 2221111000000 00000010000 0011222
Q ss_pred HHHh-hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc-hHH
Q 008025 312 WIES-VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SED 384 (580)
Q Consensus 312 ~~~~-~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~-~~~ 384 (580)
++.. ....+++.++.++..+..++ ..+|.++.+.|..+++.+.++|+++|+||+||++.+||+++..... ...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~ 406 (459)
T PRK00012 327 MYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAM 406 (459)
T ss_pred HHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhh
Confidence 2222 22357888888887665433 3458889999999999999999999999999999999999764211 112
Q ss_pred HHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHH
Q 008025 385 YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (580)
Q Consensus 385 ~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le 438 (580)
+. .+.||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|
T Consensus 407 ~~--~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E 459 (459)
T PRK00012 407 YL--SDIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459 (459)
T ss_pred hc--cccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence 21 12389999999999999999986 689999999999999999999998764
No 21
>PRK07869 amidase; Provisional
Probab=100.00 E-value=7.9e-82 Score=661.44 Aligned_cols=415 Identities=18% Similarity=0.242 Sum_probs=316.9
Q ss_pred chhHHHHhhhhhhHHHHH-----HHH----hh--hccCCccceeeccccCCCCCCCC-CCCCCCCCCceeeeecccccCC
Q 008025 6 ANLWVLLGLGLAGILLMT-----KKL----KK--NIKQDFGAFIEKLQLLPPPQPLP-PKAPHPLTGLSFAVSDLFDIEG 73 (580)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~-----~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~gpl~Gvp~~vKD~~~~~g 73 (580)
.|+..+|+.+|+.+++.+ |++ +| +.||.+|||++...+++++++++ ....|||+||||+|||+|+++|
T Consensus 10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G 89 (468)
T PRK07869 10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAG 89 (468)
T ss_pred hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCC
Confidence 356677899999985544 442 33 78999999999887766555443 2456999999999999999999
Q ss_pred cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025 74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153 (580)
Q Consensus 74 ~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa 153 (580)
++||+||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+
T Consensus 90 ~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAa 167 (468)
T PRK07869 90 LPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA 167 (468)
T ss_pred cccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHc
Confidence 999999999986 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCcccccccccCccccccCCCccccCCCccc-CCCCCcccccccCHHHHHHHHHHhcCCCccc------
Q 008025 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPI-STSLDTVGWFARDPKILRHVGHVLLQLPFAA------ 226 (580)
Q Consensus 154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~-~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------ 226 (580)
|++|+|+|||||||||||||||||||||||+||+|+.|+.|. ..++|++|||+|+++|++.+++++.+.+...
T Consensus 168 G~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~ 247 (468)
T PRK07869 168 GVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIG 247 (468)
T ss_pred CCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchh
Confidence 999999999999999999999999999999999999998774 3468999999999999999999876532110
Q ss_pred -----CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHH
Q 008025 227 -----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRL 299 (580)
Q Consensus 227 -----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~ 299 (580)
...+.||++..+.+. ....++++.++++++++.|. |++|++ +++ |....+... +. ....
T Consensus 248 ~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~---~~-~~~~ 313 (468)
T PRK07869 248 DVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGHRVEP-VDL--------PVPASFVDD---FL-LYWG 313 (468)
T ss_pred hhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHH---HH-HHHH
Confidence 123456666544321 02357899999999999986 666532 121 211111110 00 0000
Q ss_pred HHHHHHhhhhHHHHHhhCCCCC-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCC
Q 008025 300 IQRYEFKNNHNEWIESVKPALD-----PDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK 374 (580)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~ 374 (580)
+............ ....++ +........+.. +..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+
T Consensus 314 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~ 389 (468)
T PRK07869 314 FLAFALVRGGRRT---FGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPE 389 (468)
T ss_pred HHHHHHHhhhhhh---cccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCC
Confidence 0001110100000 111222 223333233333 4556888999999999999999999999999999999999
Q ss_pred CCCCCCc--hHHH---HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 375 LGGKEML--SEDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 375 ~~~~~~~--~~~~---~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
++..... .... ...+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~~ 461 (468)
T PRK07869 390 IGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA 461 (468)
T ss_pred CCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHhc
Confidence 9753221 1111 11333589999999999999999986 89999999999999999999999998864
No 22
>PRK08137 amidase; Provisional
Probab=100.00 E-value=5e-81 Score=659.44 Aligned_cols=405 Identities=23% Similarity=0.259 Sum_probs=318.4
Q ss_pred hHHHHhhhhhhHHH-----HHHHH----hh--h---ccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeee
Q 008025 8 LWVLLGLGLAGILL-----MTKKL----KK--N---IKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVS 66 (580)
Q Consensus 8 ~~~~~~~~l~~~~~-----~~~~~----~~--~---~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vK 66 (580)
...+|+.+|++++. +.|++ +| + .||.+|||++...+ ++++++ .+...|||+||||+||
T Consensus 3 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vK 81 (497)
T PRK08137 3 ALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLK 81 (497)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeee
Confidence 44568888888854 44442 22 3 38999999998654 433332 3566799999999999
Q ss_pred cccccC-CcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEecccccccccc-----CCCCCCCCCCCCCCCCCCCC
Q 008025 67 DLFDIE-GYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMP 140 (580)
Q Consensus 67 D~~~~~-g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~-----~~~~~~~G~~~NP~~~~~~~ 140 (580)
|+|+|+ |++||+||+.+++ +++.+|+++|+|||+||||++||||||||+++. +++|.+||+|+||||++|+|
T Consensus 82 D~~~v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~ 159 (497)
T PRK08137 82 DNIDAADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSP 159 (497)
T ss_pred cceeecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999 9999999999987 788999999999999999999999999999644 45899999999999999999
Q ss_pred CCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhc
Q 008025 141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220 (580)
Q Consensus 141 GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~ 220 (580)
||||||||||||+|++|+|+||||||||||||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.
T Consensus 160 GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~ 239 (497)
T PRK08137 160 CGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIA 239 (497)
T ss_pred CcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccc--------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccc
Q 008025 221 QLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 278 (580)
Q Consensus 221 ~~~~~~--------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~ 278 (580)
+.+..+ ..++.||++..+.+ ..++++.++++++++.|. |++|++ +++
T Consensus 240 g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~------ 308 (497)
T PRK08137 240 GGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGAVVID-VVD------ 308 (497)
T ss_pred CCCCCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCCEEEe-ccC------
Confidence 542111 12345666654432 257899999999999986 776643 222
Q ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHh-----------------------hCCCCCHHHHHHHHHhhcCC
Q 008025 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES-----------------------VKPALDPDISAEIGEMLEIS 335 (580)
Q Consensus 279 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~s 335 (580)
|.+..+.. .+..+...|....+..++.. ....+++.++.++..+..++
T Consensus 309 --~~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (497)
T PRK08137 309 --LDDGDWGE-------AEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPGLD 379 (497)
T ss_pred --CchhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHccCCCC
Confidence 21111110 11111111222222221111 12457788888888888899
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC
Q 008025 336 ETVIENCKSIRNEM--RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY 411 (580)
Q Consensus 336 ~~~~~~a~~~r~~~--~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~ 411 (580)
..+|.++++.+..+ ++.|.++|+ ++|+||+||++ ++|+++.... ..+. ..+|.++|++|+|+++||++..
T Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~PaisvP~g~~ 453 (497)
T PRK08137 380 DPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLTVPMGQV 453 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEEEeCCCC
Confidence 99999998755555 479999997 78999999999 8888865311 1111 1368899999999999999998
Q ss_pred CCCCcccceecccCCChHHHHHHHHHHHHH
Q 008025 412 DKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (580)
Q Consensus 412 ~~lp~g~q~~~~~~~d~~ll~la~~le~~l 441 (580)
+|+|+|+|+++++++|..+++++..+|+..
T Consensus 454 ~GlPvGvQlig~~~~d~~LL~~a~~lE~~~ 483 (497)
T PRK08137 454 QGLPVGLSFIGAAWSEARLLELGYAYEQAT 483 (497)
T ss_pred CCcCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998663
No 23
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=5.3e-81 Score=664.37 Aligned_cols=411 Identities=26% Similarity=0.317 Sum_probs=327.3
Q ss_pred HhhhhhhHHH-----HHHHH----hh-hccCCccceeeccc-cCCCCCCCC----CCCCCCCCCceeeeecccccCCccc
Q 008025 12 LGLGLAGILL-----MTKKL----KK-NIKQDFGAFIEKLQ-LLPPPQPLP----PKAPHPLTGLSFAVSDLFDIEGYVT 76 (580)
Q Consensus 12 ~~~~l~~~~~-----~~~~~----~~-~~~~~~~a~~~~~~-~~~~~~~~~----~~~~gpl~Gvp~~vKD~~~~~g~~t 76 (580)
++.+|+.+++ +.|++ +| +.++.+|+|++... ++++++++. ....+||+||||+|||||+|+|++|
T Consensus 8 t~~~l~~~~~~g~~t~~evv~a~l~ri~~~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pT 87 (600)
T PRK08186 8 TLASLRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPT 87 (600)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCccc
Confidence 5667777744 44443 33 22789999998765 333333221 1247899999999999999999999
Q ss_pred CCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCC
Q 008025 77 GFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLV 156 (580)
Q Consensus 77 t~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~ 156 (580)
|+||+.+. ++|.+|+++|+||++||||++||||||||+++.++.|++||+|+||||++|+|||||||||++||+|++
T Consensus 88 TaGs~~~~---~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~~ 164 (600)
T PRK08186 88 TAACPAFA---YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLV 164 (600)
T ss_pred CcCCHhHc---CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCc
Confidence 99999985 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc----------
Q 008025 157 DFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------- 226 (580)
Q Consensus 157 ~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~---------- 226 (580)
|||+||||||||||||+||||||||||+||+|+.|++|.++++|++|||+|+++|+..+++++.+.+..+
T Consensus 165 ~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~~ 244 (600)
T PRK08186 165 SFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPADA 244 (600)
T ss_pred ceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999887543211
Q ss_pred ---CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHH
Q 008025 227 ---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ 301 (580)
Q Consensus 227 ---~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 301 (580)
..++.||++..+.... ...++++.++++++++.|. |++|++ ++ .|.+.+. ....+....
T Consensus 245 ~~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~v~e-i~--------~~~~~~~------~~~~~~~~~ 308 (600)
T PRK08186 245 PAALPAGPRVGVPRAAQLE-FFGDAEAEAAFAAALARLEALGAELVE-ID--------FSPFLEA------ARLLYEGPW 308 (600)
T ss_pred ccccCCCCEEEEEcchhcc-ccCCHHHHHHHHHHHHHHHHcCCeEEE-ec--------chhHHHH------HHHHHHHHH
Confidence 1123466665321111 1136789999999999986 776632 22 2222111 011111222
Q ss_pred HHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc
Q 008025 302 RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML 381 (580)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~ 381 (580)
..+.+..+..++......+.+.++.++..+..++..+|.+++..|+.+++.+.++|+++|+||+||+|.+++ +++...+
T Consensus 309 ~ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~ 387 (600)
T PRK08186 309 VAERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAAD 387 (600)
T ss_pred HHHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCC
Confidence 234444556666666678999999999999999999999999999999999999999999999999999875 4332222
Q ss_pred hHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 382 SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 382 ~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
....+..+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+++...
T Consensus 388 ~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~~ 449 (600)
T PRK08186 388 PIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAALA 449 (600)
T ss_pred chhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhcc
Confidence 222223334589999999999999999975 8999999999999999999999999987643
No 24
>PRK07139 amidase; Provisional
Probab=100.00 E-value=9.2e-80 Score=637.50 Aligned_cols=393 Identities=23% Similarity=0.308 Sum_probs=306.7
Q ss_pred HhhhccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCC
Q 008025 26 LKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGA 105 (580)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGa 105 (580)
+++.-|..+|++.+...+.. ...|||+||||+|||+|+++|++||+||+.+.+ ++|.+|+++|+|||+|||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~--~~~~~dA~vV~rLr~AGA 82 (439)
T PRK07139 12 LEELKNDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLEN--FKPSYNATVVQKLINAGA 82 (439)
T ss_pred HHHhhccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHcc--CCCCCchHHHHHHHHCCC
Confidence 44455677788877644432 247999999999999999999999999999886 678999999999999999
Q ss_pred eEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCC
Q 008025 106 TCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYG 185 (580)
Q Consensus 106 i~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G 185 (580)
|++||||||||+++.+|.|.+||+|+||||++|+||||||||||+||+| +|+|+|||||||||+|||||||||||||+|
T Consensus 83 IilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT~G 161 (439)
T PRK07139 83 KPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPSYG 161 (439)
T ss_pred EEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999997 799999999999999999999999999999
Q ss_pred ccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc------------CCCCceEEEccchhhhcCCChhHHHHH
Q 008025 186 AVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------QRSPRQIIIADDCFELLKIPADRVVQV 253 (580)
Q Consensus 186 ~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------------~~~~~~l~i~~~~~~~~~~~~~~~~~~ 253 (580)
|||+.|++|+++++|++|||+|+++|++.+++++.+.+..+ ...+.||++... + ...++++.++
T Consensus 162 ~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~-~---~~~~~~v~~a 237 (439)
T PRK07139 162 AISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLDC-F---KELEEYVAKK 237 (439)
T ss_pred CcCCCCcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEECc-c---ccCCHHHHHH
Confidence 99999999999999999999999999999999987654222 124456666422 1 2247889999
Q ss_pred HHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhh--HHHHHHHHHHH---H-----HhhhhHHHHH-hhCCCC
Q 008025 254 VIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRY---E-----FKNNHNEWIE-SVKPAL 320 (580)
Q Consensus 254 ~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~---~-----~~~~~~~~~~-~~~~~~ 320 (580)
++++++.|. |++|++ +++... .+......+.. ..+....+..+ . ....+..++. .....+
T Consensus 238 ~~~a~~~L~~~G~~v~~-~~~~~~------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (439)
T PRK07139 238 YKKLINILKSENIEVEK-IKIDEK------LLKAIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSEGF 310 (439)
T ss_pred HHHHHHHHHHCCCEEEE-eCCChh------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHhcchhcc
Confidence 999999886 676632 222110 00100000000 00000000000 0 0001222322 233458
Q ss_pred CHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhc
Q 008025 321 DPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI 395 (580)
Q Consensus 321 ~~~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~ 395 (580)
++.++.++..+..++. .+|.++++.|+++++.|.++|+++|+||+||+|.+||+++........+. .+ +|.+
T Consensus 311 ~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~-~~--~t~~ 387 (439)
T PRK07139 311 GKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYM-DY--ILTI 387 (439)
T ss_pred CHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhh-hh--cccC
Confidence 8999999988876654 34899999999999999999999999999999999999875321111221 11 4788
Q ss_pred ccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 396 ~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
+|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.++
T Consensus 388 ~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~ 434 (439)
T PRK07139 388 SNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK 434 (439)
T ss_pred cccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 99999999999999668999999999999999999999999997764
No 25
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=8.6e-80 Score=648.00 Aligned_cols=367 Identities=28% Similarity=0.351 Sum_probs=302.9
Q ss_pred CCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCC
Q 008025 55 PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA 134 (580)
Q Consensus 55 ~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~ 134 (580)
.+||+||||+|||||+++|++||+||+.+. ++|.+||++|+|||+||||++||||||||+++.++.|++||+|+|||
T Consensus 29 ~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIiiGKTN~~Efa~g~~g~n~~~G~t~NP~ 105 (561)
T TIGR02713 29 RLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAF 105 (561)
T ss_pred CCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEEEEEeCchHhhcCCCCCCCCCCCCCCCC
Confidence 589999999999999999999999999985 57889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHH
Q 008025 135 APSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRH 214 (580)
Q Consensus 135 ~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~ 214 (580)
|++|+|||||||||+|||+|++++|+||||||||||||+||||||||||+||+|+.|++|++.++|++|||+|+++|+..
T Consensus 106 d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vG~~Arsv~D~~~ 185 (561)
T TIGR02713 106 DPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQ 185 (561)
T ss_pred CCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCccCCCccccccCCCeeechhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccC-------------CCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCccccccccccccccc
Q 008025 215 VGHVLLQLPFAAQ-------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK 279 (580)
Q Consensus 215 v~~~l~~~~~~~~-------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~ 279 (580)
+++++.+.+..+. ..+.||+|..+..... ..++++.++++++++.|. |++|++ +++
T Consensus 186 ~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-v~~------- 256 (561)
T TIGR02713 186 VLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQLEF-FGDSQAEAAFAAAVERLEALGVEVVE-IDF------- 256 (561)
T ss_pred HHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhcCC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecc-------
Confidence 9998875432110 1335666654211111 136789999999999986 666532 222
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 008025 280 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKD 359 (580)
Q Consensus 280 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~ 359 (580)
|.+.+.. ...+......+.+..+..++......+.+.++.++..+..++..+|.+++.+|+.+++.++++|++
T Consensus 257 -~~~~~~~------~~l~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~ 329 (561)
T TIGR02713 257 -APFLETA------ALLYEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLAG 329 (561)
T ss_pred -hhHHHHH------HHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2221110 001111122233444556666667789999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHH
Q 008025 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (580)
Q Consensus 360 ~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le 438 (580)
+|+||+||+|.+++.. +...+.......+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..++
T Consensus 330 ~DvLl~Pt~p~~~~~~-~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le 408 (561)
T TIGR02713 330 VDVLLVPTAPTHPTIE-EVLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQ 408 (561)
T ss_pred CCEEEeCCCCCCCCch-hccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHH
Confidence 9999999999987543 32222222233334589999999999999999986 799999999999999999999999998
Q ss_pred HHH
Q 008025 439 ASL 441 (580)
Q Consensus 439 ~~l 441 (580)
+..
T Consensus 409 ~~~ 411 (561)
T TIGR02713 409 AAS 411 (561)
T ss_pred hcc
Confidence 753
No 26
>PRK06828 amidase; Provisional
Probab=100.00 E-value=1.8e-76 Score=617.09 Aligned_cols=387 Identities=18% Similarity=0.212 Sum_probs=302.2
Q ss_pred HhhhhhhHH-----HHHHHH----hh--hcc---CCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccc
Q 008025 12 LGLGLAGIL-----LMTKKL----KK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD 70 (580)
Q Consensus 12 ~~~~l~~~~-----~~~~~~----~~--~~~---~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~ 70 (580)
++.+|+.++ ++.|++ +| +.| |.+|||++...+ ++++++ .+...|||+||||+|||+|+
T Consensus 14 ~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~ 92 (491)
T PRK06828 14 TIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIE 92 (491)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEE
Confidence 566777773 444442 33 677 689999997665 333322 35567999999999999999
Q ss_pred cCC-cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccc-----cCCCCCCCCCCCCCCCC---CCCCC
Q 008025 71 IEG-YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP---SQMPG 141 (580)
Q Consensus 71 ~~g-~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~~~NP~~~---~~~~G 141 (580)
|+| ++||+||+.+.+ +++.+|+++|++||++|||++||||||||+++ .++.|.+||+|+||||+ .|+||
T Consensus 93 v~gg~~tt~Gs~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pG 170 (491)
T PRK06828 93 TNDSMHTSAGTIALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVG 170 (491)
T ss_pred ecCCCcCCcCcHHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCC
Confidence 996 999999999987 78899999999999999999999999999974 58999999999999999 68999
Q ss_pred CCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcC
Q 008025 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ 221 (580)
Q Consensus 142 GSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~ 221 (580)
|||||||++||+|++|+|+|||||||||+||+||||||||||+|++|+.|++|+++++|++|||+|+++|++.+++++.+
T Consensus 171 GSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g 250 (491)
T PRK06828 171 GSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTG 250 (491)
T ss_pred cCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCccc---------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccc
Q 008025 222 LPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 278 (580)
Q Consensus 222 ~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~ 278 (580)
.+..+ ..++.||++..+.+......++++.++++++++.|. |++|++..++..
T Consensus 251 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~p~---- 326 (491)
T PRK06828 251 VDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGATVVEDIDIPS---- 326 (491)
T ss_pred CCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCCEEEecccCcc----
Confidence 33211 134566766432111111257899999999999986 777754333221
Q ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHH----------------------HhhCCCCCHHHHH-HHHHhhcCC
Q 008025 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWI----------------------ESVKPALDPDISA-EIGEMLEIS 335 (580)
Q Consensus 279 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~-~~~~g~~~s 335 (580)
+..... ..+...|+...+..++ ......+++.... .++.+..++
T Consensus 327 ----~~~~~~---------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 393 (491)
T PRK06828 327 ----FHREWS---------WGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLR 393 (491)
T ss_pred ----chhHHH---------HHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCC
Confidence 110000 0000111111111111 1222356775444 566777889
Q ss_pred HHHHHHHHHHHHHHH--HHHHhhcCC--CCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC
Q 008025 336 ETVIENCKSIRNEMR--SAISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY 411 (580)
Q Consensus 336 ~~~~~~a~~~r~~~~--~~~~~~~~~--~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~ 411 (580)
..+|.++++.|..+. +.++++|++ +|+||+||++.. .+.|++|+|+++||++..
T Consensus 394 ~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP~G~~ 451 (491)
T PRK06828 394 NPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIPAGYM 451 (491)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEeecCCC
Confidence 999999999888754 799999984 899999999763 234699999999999985
Q ss_pred -CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 412 -DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 412 -~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
+|+|+|+|+++++++|..+++++..+|+.
T Consensus 452 ~~GlPvGlQlig~~~~D~~LL~~A~a~E~~ 481 (491)
T PRK06828 452 EGGRPFGITLASTAFSEGTLIKLAYAFEQA 481 (491)
T ss_pred CCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999999999865
No 27
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=3.3e-78 Score=639.20 Aligned_cols=385 Identities=30% Similarity=0.424 Sum_probs=293.4
Q ss_pred hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHH
Q 008025 28 KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTL 100 (580)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l 100 (580)
++.||.+|||++..++.++++|+ .+...|||+||||+|||+|+++|++||+||..+.+ .++++|+++|+||
T Consensus 11 ~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~--~~~~~~a~~v~~L 88 (441)
T PF01425_consen 11 EAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALAD--NPPTEDAPVVQRL 88 (441)
T ss_dssp HHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTT--BBBSSS-HHHHHH
T ss_pred HHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccC--cCcccccchhhhe
Confidence 37899999999998877666543 46789999999999999999999999999999997 6899999999999
Q ss_pred HhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCcccc
Q 008025 101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180 (580)
Q Consensus 101 ~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~Gl 180 (580)
|++|||++||||||||+++.++.|..||+|+||||+.++|||||||||++||+|++|+|+|||||||||+||+|||||||
T Consensus 89 ~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~PAa~~Gv~Gl 168 (441)
T PF01425_consen 89 RAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRIPAAFCGVVGL 168 (441)
T ss_dssp HHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEE
T ss_pred ecccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccCchhcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-------------------CCCCceEEEccchhh
Q 008025 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------------------QRSPRQIIIADDCFE 241 (580)
Q Consensus 181 kPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-------------------~~~~~~l~i~~~~~~ 241 (580)
|||+|++|+.|++|++.++|++|||+|+++|+..+++++.+.+..+ ...+.||++..+...
T Consensus 169 kPT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~lrIGv~~~~~~ 248 (441)
T PF01425_consen 169 KPTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGLRIGVPRDDGQ 248 (441)
T ss_dssp E-STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-EEEEEGGGG-
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCccccccccccc
Confidence 9999999999999999999999999999999999999987654211 123467777665431
Q ss_pred hcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhh------hHHHH
Q 008025 242 LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN------HNEWI 313 (580)
Q Consensus 242 ~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 313 (580)
....++++.++++++++.|+ |++|++ + .+|.+..... .+..+...+.... +..++
T Consensus 249 -~~~~~~~v~~a~~~a~~~L~~~G~~vv~-~--------~~p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~ 311 (441)
T PF01425_consen 249 -WVPVDPEVRRAFEEAAEALEAAGAEVVE-V--------DLPDLDEAMD-------AYYRIFVSEGAANLARYKDFARLL 311 (441)
T ss_dssp -SSTSSHHHHHHHHHHHHHHHHTT-EEEE-E----------TTGGHHHH-------HHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred -cccccHHHHHHHHHHHHhhccccccccc-c--------cCchHHHHHH-------HHhhhHHHHHHHHHhhhhHHHHhh
Confidence 23458899999999999986 766543 2 2233322211 1111111122211 11222
Q ss_pred -HhhCCCCCHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc--hHH-
Q 008025 314 -ESVKPALDPDISAEIGEMLEISET-----VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML--SED- 384 (580)
Q Consensus 314 -~~~~~~~~~~~~~~~~~g~~~s~~-----~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~--~~~- 384 (580)
......+.+.+..++..+...... .|.++.+.|..+++.+.++|+++|+||+||++.++|+++..... ...
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~ 391 (441)
T PF01425_consen 312 AKWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTA 391 (441)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHH
T ss_pred hcccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhh
Confidence 222345667777777766543333 38999999999999999999999999999999999999987531 111
Q ss_pred H--HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHH
Q 008025 385 Y--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL 431 (580)
Q Consensus 385 ~--~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll 431 (580)
. ...+..+|.++|++|+|++++|++.. +|+|+|+|+++++++|+.+|
T Consensus 392 ~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL 441 (441)
T PF01425_consen 392 LWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL 441 (441)
T ss_dssp HHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred hhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence 1 22344578999999999999999996 89999999999999999875
No 28
>PRK11910 amidase; Provisional
Probab=100.00 E-value=1.2e-74 Score=602.54 Aligned_cols=392 Identities=20% Similarity=0.271 Sum_probs=296.6
Q ss_pred cchhHHHHhhhhhhHH-----HHHHHH----hh--hccC---CccceeeccccCCCCCCC-----CCCCCCCCCCceeee
Q 008025 5 SANLWVLLGLGLAGIL-----LMTKKL----KK--NIKQ---DFGAFIEKLQLLPPPQPL-----PPKAPHPLTGLSFAV 65 (580)
Q Consensus 5 ~~~~~~~~~~~l~~~~-----~~~~~~----~~--~~~~---~~~a~~~~~~~~~~~~~~-----~~~~~gpl~Gvp~~v 65 (580)
.|.+...++.+|+.++ ++.|++ +| ++|+ .+|||++...+ +.++|+ ....+||||||||+|
T Consensus 159 ~~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~V 237 (615)
T PRK11910 159 EPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLL 237 (615)
T ss_pred cccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEE
Confidence 3556666777887774 444442 33 6676 89999998764 233222 112358999999999
Q ss_pred ecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccc-----cCCCCCCCCCCCCCCCCCCCC
Q 008025 66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAPSQMP 140 (580)
Q Consensus 66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~~~NP~~~~~~~ 140 (580)
||||+++|++||+||.++.+ .++.+||++|+|||+||||++||||||||+++ .+++|.+||+|+||||++|+|
T Consensus 238 KDni~t~G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~p 315 (615)
T PRK11910 238 KDNIGTKELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDP 315 (615)
T ss_pred EcCcccCCCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCC
Confidence 99999999999999999987 78999999999999999999999999999976 457889999999999999999
Q ss_pred CCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhc
Q 008025 141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220 (580)
Q Consensus 141 GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~ 220 (580)
||||||||+|||+|++++|+|||||||||+||+||||||||||+|++|+.|++|+++++|++|||+|++.|++.+++++.
T Consensus 316 GGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~ 395 (615)
T PRK11910 316 SGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALT 395 (615)
T ss_pred CCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcc-----cCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhH
Q 008025 221 QLPFA-----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL 293 (580)
Q Consensus 221 ~~~~~-----~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~ 293 (580)
+.+.. ....+.||++..+. .++++..+++++++.|. |++|++..++ |.+...
T Consensus 396 g~~~~~~l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~~~--------p~~~~~------- 454 (615)
T PRK11910 396 NTTSNPPLSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGIAV--------GEFEQK------- 454 (615)
T ss_pred CCCCcCccCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCCCC--------ccHHHH-------
Confidence 64321 12455677765431 24577788888888875 7776542222 222111
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhC--------------------CCCCHHHHHHHHHhh-cCCHHH-HHHHHHHHHHHHH
Q 008025 294 KNVMRLIQRYEFKNNHNEWIESVK--------------------PALDPDISAEIGEML-EISETV-IENCKSIRNEMRS 351 (580)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~-~~s~~~-~~~a~~~r~~~~~ 351 (580)
...+..+...|+...+..|+.... ..+++. .++..+. .++..+ +..+.+.|..+++
T Consensus 455 ~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (615)
T PRK11910 455 DTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQS--ELVKSQQSTITKQQADNLASNLIQSSQN 532 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHH--HHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 112222333455555555542211 123333 1112122 234443 2336667778888
Q ss_pred HHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC--CCCCcccceecccCCC
Q 008025 352 AISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGD 427 (580)
Q Consensus 352 ~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~--~~lp~g~q~~~~~~~d 427 (580)
.++++|+ ++|+||+|+.... .+...+++|+|+++||+|.. +|+|+|+|+++++++|
T Consensus 533 ~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~sE 592 (615)
T PRK11910 533 ELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSD 592 (615)
T ss_pred HHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCCCH
Confidence 9999995 7999999974210 01123489999999999976 5999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 008025 428 RFLLDTVQNMYASLQ 442 (580)
Q Consensus 428 ~~ll~la~~le~~l~ 442 (580)
..|++++..+|+..+
T Consensus 593 ~~LL~~A~a~Eq~t~ 607 (615)
T PRK11910 593 KILLNMGYAYEQQSK 607 (615)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987644
No 29
>PRK06707 amidase; Provisional
Probab=100.00 E-value=1.4e-72 Score=590.22 Aligned_cols=386 Identities=22% Similarity=0.256 Sum_probs=293.5
Q ss_pred hHHHHhhhhhhHH-----HHHHHH----hh--hcc---CCccceeeccccCCCCCCC------CCCCCCCCCCceeeeec
Q 008025 8 LWVLLGLGLAGIL-----LMTKKL----KK--NIK---QDFGAFIEKLQLLPPPQPL------PPKAPHPLTGLSFAVSD 67 (580)
Q Consensus 8 ~~~~~~~~l~~~~-----~~~~~~----~~--~~~---~~~~a~~~~~~~~~~~~~~------~~~~~gpl~Gvp~~vKD 67 (580)
+...+..+|+.++ ++.|++ +| +.| |.+|+|++...+ ++++|+ +....+||+||||+|||
T Consensus 68 i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD 146 (536)
T PRK06707 68 VVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKD 146 (536)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEec
Confidence 3445666777664 444442 33 566 579999997654 333321 12235899999999999
Q ss_pred cccc-CCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccc-----cCCCCCCCCCCCCCCCC-CCCC
Q 008025 68 LFDI-EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP-SQMP 140 (580)
Q Consensus 68 ~~~~-~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~~~NP~~~-~~~~ 140 (580)
||++ +|+|||+||.++.+ +++.+||++|+|||++|||++||||||||++. .+++|.+||+|+||||+ .++|
T Consensus 147 ~i~~~~g~~TtaGs~~l~~--~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~p 224 (536)
T PRK06707 147 NVQTAKVMPTSAGTYVLKD--WIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDT 224 (536)
T ss_pred ccccCCCCccCcccHhhcc--CCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCC
Confidence 9999 99999999999987 68899999999999999999999999999963 57889999999999999 6899
Q ss_pred CCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhc
Q 008025 141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220 (580)
Q Consensus 141 GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~ 220 (580)
||||||||+|||+|++++|+|||||||||+||++|||||||||+|++|+.|++|+++++|++|||+|++.|++.+++++.
T Consensus 225 GGSSsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~ 304 (536)
T PRK06707 225 SGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMI 304 (536)
T ss_pred CCCCchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCccc---------------------CCCCceEEEccchhhhcCCChhHHHHH-HHHHHHHHh--CCcccccccccccc
Q 008025 221 QLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLF--GRQVLKHENLGEYF 276 (580)
Q Consensus 221 ~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~-~~~a~~~l~--G~~vv~~~~l~~~~ 276 (580)
+.+..+ ..+++||++..+.. .++++.++ ++++++.|. |+++++.+++.
T Consensus 305 g~d~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~~l~--- 376 (536)
T PRK06707 305 GYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYIQLN--- 376 (536)
T ss_pred CCCCCccccccccccCCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEeccCCc---
Confidence 543211 13456777754321 24566666 477777775 77775423221
Q ss_pred cccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHhhCC----------CC-CHHHHHHHHHhhcCC---------H
Q 008025 277 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKP----------AL-DPDISAEIGEMLEIS---------E 336 (580)
Q Consensus 277 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~g~~~s---------~ 336 (580)
... . . ...+...|+..++..|+..... .+ .+.++.++..+..+. .
T Consensus 377 -----~~~-~--------~-~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (536)
T PRK06707 377 -----NGG-V--------D-NLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITK 441 (536)
T ss_pred -----hhh-H--------H-HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhccccc
Confidence 100 0 0 0011123444444443321100 02 255666665554322 2
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC-C
Q 008025 337 -TVIENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-D 412 (580)
Q Consensus 337 -~~~~~a~~~r~~~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~ 412 (580)
..+..+.+.|..+++.++++|+ ++|+||+|.. ..|.++|++|+|+++||+|.. +
T Consensus 442 ~~~~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~----------------------~~t~~an~aG~PaitvP~G~~~~ 499 (536)
T PRK06707 442 DEFEKVVQTSQENAKKELDRYLVEKGLDALVMINN----------------------EEVLLSAVAGYPELAVPAGYDNN 499 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCC----------------------CcchhhHhcCCCeEEEecccCCC
Confidence 2334566778889999999998 8999999831 025678999999999999986 8
Q ss_pred CCCcccceecccCCChHHHHHHHHHHHHH
Q 008025 413 KCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (580)
Q Consensus 413 ~lp~g~q~~~~~~~d~~ll~la~~le~~l 441 (580)
|+|+|+|++++++.|..+++++..+|+..
T Consensus 500 GlP~Glqlig~~~~e~~LL~~A~~~E~~~ 528 (536)
T PRK06707 500 GEPVGAVFVGKQFGEKELFNIGYAYEQQS 528 (536)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999998654
No 30
>PRK06565 amidase; Validated
Probab=100.00 E-value=1.6e-70 Score=567.67 Aligned_cols=423 Identities=19% Similarity=0.225 Sum_probs=297.9
Q ss_pred HHHhhhhhhHH-----HHHHHH----hh--hcc-----CCccceeeccccCCCCCC-------CCCCCCCCCCCceeeee
Q 008025 10 VLLGLGLAGIL-----LMTKKL----KK--NIK-----QDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAVS 66 (580)
Q Consensus 10 ~~~~~~l~~~~-----~~~~~~----~~--~~~-----~~~~a~~~~~~~~~~~~~-------~~~~~~gpl~Gvp~~vK 66 (580)
..++.+|+.++ ++.|++ +| +.| |.+|+|++...+ ++++| +.++..|||+||||+||
T Consensus 6 ~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vK 84 (566)
T PRK06565 6 EVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAK 84 (566)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEe
Confidence 34556666663 445543 33 667 789999986544 33332 23456799999999999
Q ss_pred cccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCC----CCCC
Q 008025 67 DLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ----MPGG 142 (580)
Q Consensus 67 D~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~----~~GG 142 (580)
|+|+++|++||+||+.+.+ +++++||++|++||+||||++||||||||+++.++ |.+||+|+||||+.| +|||
T Consensus 85 D~~~v~G~~TT~Gs~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGG 161 (566)
T PRK06565 85 DSYLVKGLTAASGSPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASG 161 (566)
T ss_pred cccccCCCCcccccHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCC
Confidence 9999999999999999987 68999999999999999999999999999999876 679999999999999 5999
Q ss_pred CCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCC
Q 008025 143 SSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQL 222 (580)
Q Consensus 143 SSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~ 222 (580)
||||||++||+|++++|+|||||||||+||++|||||||||+|++|+.|++|+++++|++|||+|+++|++.+++++.+.
T Consensus 162 SSgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g~ 241 (566)
T PRK06565 162 SSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVAD 241 (566)
T ss_pred CCccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred Ccc--------------------------------cCCCCceEEEccchhhhcC------------------CChhHHHH
Q 008025 223 PFA--------------------------------AQRSPRQIIIADDCFELLK------------------IPADRVVQ 252 (580)
Q Consensus 223 ~~~--------------------------------~~~~~~~l~i~~~~~~~~~------------------~~~~~~~~ 252 (580)
+.. ...+++||+++...+.... ..++++.+
T Consensus 242 D~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 321 (566)
T PRK06565 242 DPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVID 321 (566)
T ss_pred CcccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHHH
Confidence 211 0124567777655432110 02468999
Q ss_pred HHHHHHHHHh--CCccccccccccc--ccccCC---chhhhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHhhC------
Q 008025 253 VVIKSTEKLF--GRQVLKHENLGEY--FDSKVP---SLKGFHKTNGELK--NVMRLIQRYEFKNNHNEWIESVK------ 317 (580)
Q Consensus 253 ~~~~a~~~l~--G~~vv~~~~l~~~--~~~~~p---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------ 317 (580)
+++++++.|+ |++|++ +++... ++...+ .+.++.....++. +.... ....+..|+....
T Consensus 322 ~~~~a~~~L~~~Ga~vv~-v~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~~~~~yL~~~~~~~~~s 395 (566)
T PRK06565 322 LWEAARRALEAAGAEVIE-VDFPLVSNCEGDRPGAPTVFNRGLVSPEFLHDELWEL-----SGWAFDDFLRANGDPKLNR 395 (566)
T ss_pred HHHHHHHHHHHCCCEEEE-eecCCccccccccccccccccccccchhhhhccccch-----hHHHHHHHHHhcCCCCCCC
Confidence 9999999986 887753 333320 111111 0000000000000 00000 0000111111111
Q ss_pred -------------CCCCH----HHH----HHHHH---h-hc-CCHHHHHHHHHHHHHHHH-HHHhhcC--CCCEEEEcCC
Q 008025 318 -------------PALDP----DIS----AEIGE---M-LE-ISETVIENCKSIRNEMRS-AISSLLK--DDGILVTPTT 368 (580)
Q Consensus 318 -------------~~~~~----~~~----~~~~~---g-~~-~s~~~~~~a~~~r~~~~~-~~~~~~~--~~Dvll~Pt~ 368 (580)
...-+ ... ...+. + .. .....|..+++.++..++ .++++|. +.|+||.|+.
T Consensus 396 l~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~ 475 (566)
T PRK06565 396 LADVDGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTV 475 (566)
T ss_pred HHHhhhhhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 00001 010 01110 1 01 112235566666666765 6777776 5689999999
Q ss_pred CCCCCCCCCCCCchHH--HHHH-Hhhhhhc-ccccCCceeeeeCcCC--CCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 369 AYPPPKLGGKEMLSED--YQNR-AFSLLSI-ASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 369 ~~~ap~~~~~~~~~~~--~~~~-~~~~t~~-~n~~g~P~~~~P~~~~--~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
+..+|..+........ |+.. +.+.+.. .+.+|+|+|+||+|.. .|+|+|++++++.++|..|++++..+|+..+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~ 555 (566)
T PRK06565 476 ADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS 555 (566)
T ss_pred CCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence 9999988765433211 1111 1223334 4899999999999986 7999999999999999999999999997654
No 31
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-66 Score=516.75 Aligned_cols=377 Identities=28% Similarity=0.369 Sum_probs=277.0
Q ss_pred CCCCCCCCCCCceeeeecccccCCccc-CCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCC
Q 008025 50 LPPKAPHPLTGLSFAVSDLFDIEGYVT-GFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYD 128 (580)
Q Consensus 50 ~~~~~~gpl~Gvp~~vKD~~~~~g~~t-t~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G 128 (580)
+.+...+||+||||+|||+|+++|.+| |++|..+.+ +.++.||++|++||++||+++|||||+||+|+.++++.+||
T Consensus 74 ~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l~~--~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G 151 (506)
T KOG1211|consen 74 KNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWMLEH--YNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYG 151 (506)
T ss_pred cCCCcCCCcCCceEEEeeceecCCccCCchhhhhhcc--CCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCC
Confidence 345678999999999999999999999 777777765 78999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccC
Q 008025 129 TPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208 (580)
Q Consensus 129 ~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~ 208 (580)
+|+|||++.+.|||||||||++||++++++|+|||||||+|+||++|||+|||||+|++|+.|++|++.++|++||+||+
T Consensus 152 ~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtDTgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~t 231 (506)
T KOG1211|consen 152 TTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFART 231 (506)
T ss_pred ccCCCCcccccCCCCcchhHHHHHhccchhhccccCCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccc--------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcc
Q 008025 209 PKILRHVGHVLLQLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQV 266 (580)
Q Consensus 209 ~~d~~~v~~~l~~~~~~~--------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~v 266 (580)
+.|...|..++.+.+..+ ...+.|++|+....... .+.++...++...++|. |..+
T Consensus 232 v~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~~~~~l~~~r~GIp~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~ 309 (506)
T KOG1211|consen 232 VYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELIGSMDLSGLRIGIPKERLVQG--LSSGVLSLWEELADLLGSLGAKV 309 (506)
T ss_pred cchhHHHhhhhcCCCccCcccccCCcccccchhhcccccccccccCceeeccccc--ccHHHHHHHHHHHHHhhcccccc
Confidence 999988888766543211 23345666665543321 24677888877776664 4333
Q ss_pred cccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHh---------hhhHHHHHh-hCCCCCHHHHHHHHHhhc---
Q 008025 267 LKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFK---------NNHNEWIES-VKPALDPDISAEIGEMLE--- 333 (580)
Q Consensus 267 v~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~g~~--- 333 (580)
. ...+.......... . .. ...+....+.++... .....++.. +...+..++..++..+.-
T Consensus 310 ~-~~~lp~~~~~~~~~-~-~~----s~~ea~s~laryd~~~~~~r~~~~~~~~~v~~~~rs~~~n~~v~~~i~~g~~~l~ 382 (506)
T KOG1211|consen 310 N-EVSLPTTINGLCGY-S-LS----SASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYILA 382 (506)
T ss_pred e-eeecchhhhccccc-c-cc----chhhhhhhHHHHHHHHhhcchhhhhccceeeeeccccccchhhcceeeccceehh
Confidence 1 12222221111110 0 00 011222222222221 111122211 122344455555554322
Q ss_pred --CCHHHHHHHHHHHHHHHHHHH---hhcCCCCEEEEcCCCCCCCCCCCCCC-chHHHHHHHhhhhhcccccCCceeeee
Q 008025 334 --ISETVIENCKSIRNEMRSAIS---SLLKDDGILVTPTTAYPPPKLGGKEM-LSEDYQNRAFSLLSIASVSGCCQVTVP 407 (580)
Q Consensus 334 --~s~~~~~~a~~~r~~~~~~~~---~~~~~~Dvll~Pt~~~~ap~~~~~~~-~~~~~~~~~~~~t~~~n~~g~P~~~~P 407 (580)
....-+.++++.|+.....+. +.+++.|+|++||.+ ++....... ...........+++++|+.|+|++++|
T Consensus 383 ~~~~~~~f~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~--~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP 460 (506)
T KOG1211|consen 383 KENDQDYFEKALEVRRLIQEDFNRRKAALEGVDYLVTPTAP--PPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIP 460 (506)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhcccccccCCeeeccCCC--CcchhhhhhcccccccccccceeecccccCCCceEEe
Confidence 233445778888888888887 788999999999943 333332221 111111222348999999999999999
Q ss_pred CcCC-CCCCcccceecccCCChHHHHHHHHHHH
Q 008025 408 LGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (580)
Q Consensus 408 ~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~ 439 (580)
+|.. +|+|+|+|+++..+.|..++.++...++
T Consensus 461 ~G~~~~g~P~glqi~g~~~~e~~~~~l~~~~~~ 493 (506)
T KOG1211|consen 461 VGLKNGGLPIGLQIMGGAFAEPTLIDLALAIGQ 493 (506)
T ss_pred eeecCCCCceEEEeecccccchHHHHHHHhhcc
Confidence 9986 8999999999999999988888777654
No 32
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-61 Score=489.70 Aligned_cols=411 Identities=22% Similarity=0.250 Sum_probs=298.1
Q ss_pred hHHHHhhhhhhHHHHHHH-----H----hh--hccCCccceeeccccCCCCCCCC-------CCCCCCCCCceeeeeccc
Q 008025 8 LWVLLGLGLAGILLMTKK-----L----KK--NIKQDFGAFIEKLQLLPPPQPLP-------PKAPHPLTGLSFAVSDLF 69 (580)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~-----~----~~--~~~~~~~a~~~~~~~~~~~~~~~-------~~~~gpl~Gvp~~vKD~~ 69 (580)
+..+|+++|+..++.+|. + +| .+|+.+||+++..++.+..+++. ...++||.||||+|||+|
T Consensus 52 il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~ 131 (560)
T KOG1212|consen 52 ILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESI 131 (560)
T ss_pred HhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhhe
Confidence 456789999999777773 2 33 89999999999988876555432 235689999999999999
Q ss_pred ccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q 008025 70 DIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV 149 (580)
Q Consensus 70 ~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaa 149 (580)
.++|+.+|.|...... .++++|+.+|+.|+++|||++.+||.||..++..|.|..||+|.||||.+|+|||||||+||
T Consensus 132 ~vkg~d~T~G~~~~~~--~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaA 209 (560)
T KOG1212|consen 132 SVKGYDSTAGLLARTN--QPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAA 209 (560)
T ss_pred eecCccccchhhhccC--CCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHH
Confidence 9999999999987665 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCC----CCCcccccccCHHHHHHHHHHhcCCCcc
Q 008025 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLPFA 225 (580)
Q Consensus 150 aVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~----sld~~G~~ar~~~d~~~v~~~l~~~~~~ 225 (580)
++++|.++||+|||.||||||||+|||+||+|||.+|+|..|..|..+ .+-..|||+|+++|+..++..+.+....
T Consensus 210 LigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~~ 289 (560)
T KOG1212|consen 210 LLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSGP 289 (560)
T ss_pred HHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCccc
Confidence 999999999999999999999999999999999999999998876643 3457899999999999999876653210
Q ss_pred ---c--------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhh
Q 008025 226 ---A--------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF 286 (580)
Q Consensus 226 ---~--------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~ 286 (580)
+ ...+.++++..+ +....+.+...+++.+.++.+. ||++++ .+ .|.++..
T Consensus 290 ~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~--dg~~~~~pa~~RAv~~~~~~l~~~g~~~~~-f~--------~~~~~~~ 358 (560)
T KOG1212|consen 290 KLLDPYPVPVKFMEVFYKSSDKLVIGYYVD--DGFFDPSPAMQRAVQETIDLLEKAGHEVVP-FD--------LPDLKHV 358 (560)
T ss_pred cccCCCCCCchhhhhhhhccCCccceEEec--CCCCCcCHHHHHHHHHHHHHHHhcCcceeE-ec--------CCcchHH
Confidence 0 122233333221 2223356788888888877765 777643 11 1222211
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhh-HHHH-HhhC---------CCCCHHHHH-----------HHHHhhcCCHHHHHHHHH
Q 008025 287 HKTNGELKNVMRLIQRYEFKNNH-NEWI-ESVK---------PALDPDISA-----------EIGEMLEISETVIENCKS 344 (580)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---------~~~~~~~~~-----------~~~~g~~~s~~~~~~a~~ 344 (580)
.+ .+.. ...+....+ ..+. .... ..+...... .+.........+.++.+.
T Consensus 359 ~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 430 (560)
T KOG1212|consen 359 AD-------MFFR-VMPDDGDYISEMYLLDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNYE 430 (560)
T ss_pred HH-------HHHH-HcccccchhhHHhhcccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhcccchHHHHHHHH
Confidence 11 0000 000000000 0000 0000 011111111 111122223333344444
Q ss_pred HHHHHH--HHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC-----------
Q 008025 345 IRNEMR--SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY----------- 411 (580)
Q Consensus 345 ~r~~~~--~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~----------- 411 (580)
.++.++ ........+.||||||+.+.|||+|+..... ...+.||.+||++|+|+.+||++..
T Consensus 431 ~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~-----~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~ 505 (560)
T KOG1212|consen 431 DIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLL-----VNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYP 505 (560)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhh-----ccchhHHHHHHhccCCcccccccccchhhhcccccc
Confidence 444444 4444556789999999999999999975321 1235699999999999888887531
Q ss_pred ----------------CCCCcccceecccCCChHHHHHHHHHHHHHHHh
Q 008025 412 ----------------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ 444 (580)
Q Consensus 412 ----------------~~lp~g~q~~~~~~~d~~ll~la~~le~~l~~~ 444 (580)
.|+|+|+|+++.+++|+.++++++.+|+.+..+
T Consensus 506 ~~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg~ 554 (560)
T KOG1212|consen 506 MNDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGGW 554 (560)
T ss_pred cccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCCc
Confidence 589999999999999999999999999877654
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4.6e-18 Score=158.53 Aligned_cols=121 Identities=40% Similarity=0.579 Sum_probs=116.6
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
+....++.++..|+.+++.++|.+|+..|.+||+++|.++.+|.+++.+|.++|+|+.|+++|+.+|++||.+.++|.+|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
|.+|+.+|+|++|++.|+++|+++|+|...+..|...++++
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988875
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=2.5e-15 Score=131.97 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=109.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g 546 (580)
++.+|..+++.|+|++|+..|++++.++|.+..+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 547 YYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 547 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++++|++.|+++++++|+++..+..++.+...+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999998877653
No 35
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.59 E-value=6.1e-15 Score=148.46 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008025 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL 509 (580)
Q Consensus 430 ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~ 509 (580)
++.....+..+++.+.++.. .+|+..++|+++|+.+...+.|+.|+.+|.+++.+.|+++.++-|+|.+|+
T Consensus 227 ~f~~~Gei~~aiq~y~eAvk---------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVK---------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred HHhhcchHHHHHHHHHHhhc---------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 44455555555555554433 346888899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 510 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 510 ~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++|+.+.|+..|+++|++.|+.+.+|.|+|.++...|+..||+.+|++++.+.|+.+++.++|+.++...
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998887643
No 36
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.55 E-value=1.8e-13 Score=117.78 Aligned_cols=106 Identities=9% Similarity=-0.012 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
++..+..|.+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
|+...|+.+.|++.|+.++...-.++
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999999999999974443
No 37
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-13 Score=137.62 Aligned_cols=141 Identities=38% Similarity=0.530 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008025 429 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY 508 (580)
Q Consensus 429 ~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~ 508 (580)
.++.-....++.++....... .+|+.+......|+.+|+.|+|..|+.+|+++|..+|+++..|.|+|.||
T Consensus 332 ~~ls~lk~~Ek~~k~~e~~a~---------~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 332 DLLSKLKEAEKALKEAERKAY---------INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 344444445544444433322 34566777888899999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 509 LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 509 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.+++++..|+.+++++++++|++.++|++.|.++..+.+|++|.+.|+++++++|++..+...+.++.+.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888664
No 38
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.54 E-value=3.3e-14 Score=143.28 Aligned_cols=127 Identities=18% Similarity=0.173 Sum_probs=83.7
Q ss_pred ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
.-+.+.....++.+++++++|+++..+|.+++|...|.++++..|+.+.+++|||.+|.++|++++|+.+|+++|+++|+
T Consensus 341 ~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 341 DCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 33444455556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.++++.|+|..|..+|+.++|+++|.+++..+|..+++..+|+.+.+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 66666666666666666666666666666666666666666666554
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.54 E-value=2e-13 Score=119.11 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=113.2
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
..+|++....+.+|..+++.|++++|+..|++++..+|.+..++.++|.++..++++++|++.++++++.+|+++..+++
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|.++...|++++|.+.|+++++++|++.........+.+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999877776666544
No 40
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.53 E-value=1.5e-13 Score=127.30 Aligned_cols=125 Identities=22% Similarity=0.254 Sum_probs=112.4
Q ss_pred cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcC
Q 008025 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY-LESGS--FLQAEADCTKAINLD 528 (580)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~l~ 528 (580)
.+......+|++.+.|+.+|..+...|++++|+..|+++++++|++...+.++|.++ ...|+ +++|.+.++++++++
T Consensus 61 ~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d 140 (198)
T PRK10370 61 ALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD 140 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 344555667899999999999999999999999999999999999999999999975 67787 599999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
|++..+++++|.++++.|+|++|+++|+++++++|.+.+-...+..|.
T Consensus 141 P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~ 188 (198)
T PRK10370 141 ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESIN 188 (198)
T ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 999999999999999999999999999999999998766655555544
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.53 E-value=2.1e-13 Score=138.33 Aligned_cols=114 Identities=35% Similarity=0.495 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
.+...|+.++..|+|++|++.|+++++++|++..+|+++|.+|+.+|++++|+.+++++++++|+++.+|+++|.+|+.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 546 GYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 546 g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
|+|++|+.+|+++++++|+++.+...++.+...+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 42
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3e-13 Score=131.84 Aligned_cols=118 Identities=36% Similarity=0.484 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
..+......|+.+|+.|+|..|+..|.++++.-... ..++.|++.||+++++|.+|++.|+++|+
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 455667889999999999999999999999863321 35789999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 527 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++|+|.+++|++|.++..+++|+.|+..|+++++++|+|..+...+..|.+.+
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=1.6e-12 Score=116.91 Aligned_cols=136 Identities=20% Similarity=0.092 Sum_probs=122.7
Q ss_pred HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521 (580)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 521 (580)
...+...++..++..+..+|+...+|..++.+|.+.|+.+.|-+.|+++++++|++.++++|.|.-++.+|+|++|.+.|
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F 126 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQF 126 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHH
Confidence 44555666666677788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 522 TKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 522 ~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++|+.. .+.....|-|+|.|..++|+++.|.++|+++++++|+++.....+.+...
T Consensus 127 ~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 127 ERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred HHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 999984 34557799999999999999999999999999999999998888877643
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=2.5e-12 Score=127.69 Aligned_cols=107 Identities=22% Similarity=0.216 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
...+..++++|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|+++++++|++..+|+++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
++...|++++|++.|+++++++|+++.
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999974
No 45
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=3.6e-12 Score=111.65 Aligned_cols=118 Identities=34% Similarity=0.469 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
...+..+...|+.+|++|+|.+|...|..||++.|.. .-.|.|+|.+.++++.++.|++.|.++|+++|.+.+++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 3567788999999999999999999999999999875 45788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.+++.+|.++.+|++|+++|++.++++|....+.....++..+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 9999999999999999999999999999999888887776544
No 46
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.40 E-value=9.7e-13 Score=124.12 Aligned_cols=112 Identities=46% Similarity=0.587 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
.+.+.|+.||++|.|++||++|.+++..+|.++..+.|++.+|+++.+|..|..+|+.++.++..+.++|.+++.+...+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 546 GYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 546 g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
|+.++|.++++.+|+++|++.+....++.+..
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999998888887754
No 47
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.35 E-value=2.2e-11 Score=134.05 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=94.2
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
......+|.....++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|+.+|++++|+++|+++++++|++..
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 33344456666777777777777778888888888777777777777778888887788888888888888888887777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+++++|.++.++|++++|+..|+++++..|+++.++..++.+..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777877777888888888888887777777777777766543
No 48
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.34 E-value=2.9e-11 Score=102.65 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLR 537 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 537 (580)
.+.++.+|..++++|++++|++.|+++++.+|++ ..+++.+|.++++.+++++|++.|+++++.+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578999999999999999999999999999876 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
+|.++..++++++|.++++++++..|++..+.....+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 9999999999999999999999999999887766543
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.7e-12 Score=133.05 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=112.3
Q ss_pred cCCChHHHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008025 424 HGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 503 (580)
Q Consensus 424 ~~~d~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ 503 (580)
+...+....++..+-- ..+...+...+...++.+|..+.+|-.+|-.+....+|+.|..+|++||..+|.+..+||.
T Consensus 418 ~~sPesWca~GNcfSL---Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSL---QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred CCCcHHHHHhcchhhh---hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 3344444444444321 1223334455666667777777777777777777777777777777777778888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 504 la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+|.+|+++++++.|+-+|++|++++|.+.......|..+.++|+.++|++.|++|+.++|.|+-..+..+.+..
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877777654
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.2e-11 Score=119.60 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=116.2
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
...-+|....+|-.+|..|..+++-..|++.|++|++.+|.|..+|+.||++|--++...=|+-+|++|+++.|++...|
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw 435 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLW 435 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHH
Confidence 33456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
..||.||.++++.++|++||.+++.....+..++..|+.+.+.+
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.32 E-value=4.7e-11 Score=131.38 Aligned_cols=118 Identities=21% Similarity=0.278 Sum_probs=113.2
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
.+..+..+..+|..++.+|++++|+..|+++++++|++...|..+|.++..+|++++|+++|+++++++|+++.+|+++|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.++..+|++++|+.+|+++++++|++..++..++.+..
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887654
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=4.1e-11 Score=129.63 Aligned_cols=130 Identities=11% Similarity=-0.045 Sum_probs=109.1
Q ss_pred hhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
.+...+.+....+|++..++..+|..+...|++++|+..|+++++++|+++.+++.+|.++..+|++++|++++++++++
T Consensus 322 ~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 322 KAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444455566678888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHh
Q 008025 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE-PTNKRASLSADRLRK 577 (580)
Q Consensus 528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~ 577 (580)
+|+++.+++.++.+++..|++++|++.++++++.. |+++.++..++.+..
T Consensus 402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~ 452 (553)
T PRK12370 402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS 452 (553)
T ss_pred CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 99888877777777888899999999999988775 778888888877654
No 53
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.30 E-value=3.8e-11 Score=135.49 Aligned_cols=126 Identities=12% Similarity=0.011 Sum_probs=114.0
Q ss_pred ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
..+.+....+|+ ...+..+|.++.+.|++++|+..|+++++++|++..+++++|.++.+.|++++|++.|+++++++|+
T Consensus 597 ~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 597 NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 333444445565 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++.+++++|.++..+|++++|+++|+++++++|++.......+.+.+
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 99999999999999999999999999999999999888887777654
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=5.2e-11 Score=107.37 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
..+.+..++|..|++.|++..|.+.++++|+.+|++..+|..++.+|.++|+.+.|.+.|++|++++|++...++|.|.-
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Q 008025 542 REMLGYYKEAIEDFSYALVL--EPTNKRASLSADRLR 576 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~l~~l~ 576 (580)
++.+|+|++|.++|++++.. .+.-...+.+++.|-
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 99999999999999999975 455666777766653
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=4e-11 Score=129.68 Aligned_cols=131 Identities=14% Similarity=-0.088 Sum_probs=117.4
Q ss_pred HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
...+...+.+....+|+.+..++.+|..+...|++++|+..|+++++++|.+...++.++.+++..|++++|++.+++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44455566677788899999999999999999999999999999999999998888888888889999999999999999
Q ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 526 NLD-KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 526 ~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+.+ |+++.++.++|.+|..+|++++|++.+++.....|.+..+...+....
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 885 889999999999999999999999999999999998888888776653
No 56
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.4e-11 Score=121.77 Aligned_cols=112 Identities=39% Similarity=0.501 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
..+...|+..+..|+|+.|+.+|.+++.++|.+...|.|+..+|..+++|++|+++..+.++++|+++++|.++|.++.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+|+|++|+..|.+.|+.+|+|+..+..+..+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999988765
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.28 E-value=9.5e-11 Score=127.35 Aligned_cols=122 Identities=5% Similarity=-0.061 Sum_probs=108.8
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
...++..++++.+|.+..+.|++++|...++.++++.|++..++.+++.++.+++++++|+..++++++.+|+++.+++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
+|.++.++|+|++|.++|++++..+|+++.++..++.+.+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999998899999999888877643
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=3.2e-11 Score=123.79 Aligned_cols=136 Identities=17% Similarity=0.084 Sum_probs=127.4
Q ss_pred hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
++.+.+...+...+..++.+-.+||.+|.+|.++++++.|.-+|++|++.+|.+......+|..+.++|+.++|++.|++
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 34444556666777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 524 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
|+.++|.++-..|.+|.+++.+++|++|++-+++..++-|++..++..++++.+.+
T Consensus 549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998765
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1.3e-10 Score=115.41 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=106.3
Q ss_pred hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
+...+.+....+|+...+++.+|..+...|++++|++.|+++++++|++..+++++|.+++..|++++|+++++++++++
T Consensus 83 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 83 ARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33445555666788899999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCH----------------------------------------------------------------------HHHHHH
Q 008025 529 KKNV----------------------------------------------------------------------KAYLRR 538 (580)
Q Consensus 529 p~~~----------------------------------------------------------------------~a~~~l 538 (580)
|+++ ++|+++
T Consensus 163 P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~L 242 (296)
T PRK11189 163 PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYL 242 (296)
T ss_pred CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 6432 256777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHh
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEP-TNKRASLSADRLRK 577 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~l~~l~~ 577 (580)
|.++.++|++++|+.+|+++++++| ++.+....+-++.+
T Consensus 243 g~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 243 AKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 8888888888888888888888886 55666555555443
No 60
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.27 E-value=1.1e-10 Score=107.49 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=112.4
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.++.+...+..+|..++.+|+|.+|+..++++..++|+++++|+.+|.+|.++|++++|...|.+++++.|+++.+..|+
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl 174 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence 34566667777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
|..|+-.|+++.|+..+.++...-+.+..+..++..+..+
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998876543
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=4.2e-11 Score=118.31 Aligned_cols=95 Identities=42% Similarity=0.678 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
+.+..+.++||.+|++|+|++||++|+++|++.|+.+..|.|++-||..+|++++.++++.++++++|++.+++++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHH
Q 008025 542 REMLGYYKEAIEDFS 556 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~ 556 (580)
+..+|++++|..+.-
T Consensus 193 ~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVT 207 (606)
T ss_pred HHhhccHHHHHHhhh
Confidence 999999999998875
No 62
>PLN02789 farnesyltranstransferase
Probab=99.26 E-value=1.9e-10 Score=114.13 Aligned_cols=128 Identities=14% Similarity=0.009 Sum_probs=117.5
Q ss_pred hccccccchhchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Q 008025 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF--LQAEADCTKAIN 526 (580)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~ 526 (580)
.......+..+|++..+|..++.++...+ +++++++.++++++.+|++..+|+.++.++.++++. ++++++++++++
T Consensus 57 L~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 57 LDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 33444566778999999999999999998 689999999999999999999999999999999874 788999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 527 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++|+|..+|++++.++..++++++++++++++++++|.|..+|...+.+..
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887653
No 63
>PRK15331 chaperone protein SicA; Provisional
Probab=99.23 E-value=4.3e-10 Score=97.43 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008025 429 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY 508 (580)
Q Consensus 429 ~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~ 508 (580)
..-+++..+...+........ ......+..+..+..|..++++|+|++|...|+-....+|.++++|+.||.|+
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~------l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~ 81 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKD------VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC 81 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHH------HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 344455555555554332221 11223567788999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 509 LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 509 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
..+++|++|+..|..+..++++++...+..|.||..+|+.++|+.+|+.+++ .|.+.........+..
T Consensus 82 Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 82 QLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLE 149 (165)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 5777766655544443
No 64
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=4.1e-11 Score=90.99 Aligned_cols=67 Identities=43% Similarity=0.600 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEP 563 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p 563 (580)
++..|+.+|.+++.+++|++|+++|+++++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555566666666666666666666666666666666666666666665 46666666666666555
No 65
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.22 E-value=2.9e-10 Score=128.43 Aligned_cols=118 Identities=18% Similarity=0.065 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
+.....+..++......|++++|+..|+++++++|+ ..+++++|.++.++|++++|+++|+++++++|+++.+++++|.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 444455555666666779999999999999999996 9999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++..+|++++|++.|+++++++|+++.++..++.+...+
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999887643
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=3.6e-10 Score=102.87 Aligned_cols=108 Identities=23% Similarity=0.275 Sum_probs=99.4
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
.++..+..++.+|..+...|++++|+.+|+++++..|+. ..+++++|.++..+|++++|+++++++++.+|++..++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 346778889999999999999999999999999987653 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCH
Q 008025 536 LRRGTAREMLGY--------------YKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 536 ~~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~~ 566 (580)
..+|.++..+++ +++|.++++++++++|++.
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999988 7889999999999999873
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=6.6e-10 Score=105.86 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=85.4
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKNVKAY 535 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~~~~a~ 535 (580)
...|.....+..+|..++..|++++|++.|+++++..|++...+++++.++...|++++|++.++++++.. +.....+
T Consensus 59 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 138 (234)
T TIGR02521 59 EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSL 138 (234)
T ss_pred HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHH
Confidence 34455666777777777777888888888888777777777777777777777777777777777777643 3445667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+++|.++...|++++|.+.|+++++.+|++...+..++.+.
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 77777777777777777777777777777766666665553
No 68
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.20 E-value=2.8e-10 Score=105.50 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=95.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 008025 477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-EMLGY--YKEAIE 553 (580)
Q Consensus 477 ~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~~~g~--~~~A~~ 553 (580)
.++.++++..|+++++.+|++.+.|+.+|.+|..+|++++|++.|+++++++|++...++++|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 554 DFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 554 ~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.++++++++|++..++..++.....
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHH
Confidence 9999999999999999999876543
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.20 E-value=2.6e-10 Score=91.65 Aligned_cols=99 Identities=39% Similarity=0.570 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
.++.+|..++..|++++|+..++++++..|++..+++.+|.++...+++++|+++++++++..|.+...++.++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 008025 546 GYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 546 g~~~~A~~~~~~al~l~p~ 564 (580)
|++++|.+.++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 70
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.4e-10 Score=114.14 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
.++...-.||.|.-.++.++|+.+|+++++++|+...+|-.+|-=|+++++...|++.|++|++++|.+..+||.+|.+|
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
..++.+.=|+-+|++|+++.|+|...|..|+++..++
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998765
No 71
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=5.7e-11 Score=90.19 Aligned_cols=67 Identities=33% Similarity=0.502 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDK 529 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p 529 (580)
++..|+.+|..++..|+|++|+..|+++++++|+++.+++++|.+|.+++ ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999999999999999999 79999999999999998
No 72
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=1.6e-10 Score=109.43 Aligned_cols=116 Identities=25% Similarity=0.283 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
++.+.+.++++|..++..|++.+|+..|..+++.+|++..+++.+|.+|+.+|+-..|+.++.++|++.|+...+...+|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRL 575 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~l 575 (580)
.++.++|++++|.+.|+++++-+|++. ++...+..+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence 999999999999999999999999654 444444433
No 73
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=8e-11 Score=111.37 Aligned_cols=119 Identities=23% Similarity=0.163 Sum_probs=108.7
Q ss_pred chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~~~~ 533 (580)
...+|.+++-|..+|.+|+.++++..|...|.+++++.|++++.+..+|.+++.+.+ ..++.+.+++++++||++..
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 345789999999999999999999999999999999999999999999999987754 67999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+.+.+|..+++.|+|.+|...+++.+++.|.+..-...+.+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 999999999999999999999999999999877666555543
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=4.9e-11 Score=120.54 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
.++++...+|..|+-.|+|++|+++|+.||..+|++...|+.||-++-.-.+..+|++.|++|+++.|++..++||+|++
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Q 008025 542 REMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+..+|.|+||.++|-.+|.+.+.
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999876
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=1.5e-10 Score=101.58 Aligned_cols=97 Identities=18% Similarity=0.081 Sum_probs=88.8
Q ss_pred hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
+...+......+|.+...++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++
T Consensus 43 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 43 AVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33444555666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc
Q 008025 529 KKNVKAYLRRGTAREML 545 (580)
Q Consensus 529 p~~~~a~~~lg~~~~~~ 545 (580)
|+++..+.+++.+...+
T Consensus 123 p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 123 YADASWSEIRQNAQIMV 139 (144)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99999999999887654
No 76
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.17 E-value=9.2e-10 Score=105.98 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=101.8
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 008025 465 EIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLR 537 (580)
Q Consensus 465 ~~~~~~g~~~-~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 537 (580)
...|..+..+ ++.|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++.+|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4557777766 66799999999999999999998 5899999999999999999999999999998874 779999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+|.++..+|++++|++.|+++++..|+...+.....++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~ 262 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA 262 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence 9999999999999999999999999999988877777643
No 77
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=5.5e-10 Score=121.48 Aligned_cols=155 Identities=11% Similarity=-0.042 Sum_probs=124.6
Q ss_pred eecccCCChHHHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 008025 420 FIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499 (580)
Q Consensus 420 ~~~~~~~d~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~ 499 (580)
++..+..+...+.+...+...+...+.. ...+....+..|++..+...++.++.+++++++|+..++++++.+|+++.
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea--~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEG--LAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHH--HHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 3334444444444444444444333322 23334555667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHH
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA-SLSADRLR 576 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~l~~l~ 576 (580)
+++.+|.++.++|+|++|+..|+++++.+|++++++..+|.++..+|+.++|...|++++++...-... ...+..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN 233 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997665544 33444443
No 78
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.9e-10 Score=113.77 Aligned_cols=109 Identities=21% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g 546 (580)
|..++..|..+.+-.+-...|+++.+++|++++.|+.+|..++-+++|++|+.+|+++++++|.++.+|..++.++++++
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 547 YYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 547 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+++++...|+.+++..|+.++++...+++
T Consensus 443 k~~~~m~~Fee~kkkFP~~~Evy~~fAei 471 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPNCPEVYNLFAEI 471 (606)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 55555555555555555555555544443
No 79
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.14 E-value=8e-10 Score=121.67 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLK----AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~----Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
.|+....++.+|..+...|++++ |+..|+++++++|++..++.++|.++.++|++++|+..++++++++|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45556666667777777777664 66677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
+++|.+|.++|++++|++.|+++++.+|++...+..++
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 77777777777777777777777776666655444433
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=2.1e-09 Score=102.36 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=107.4
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
..+.....++.+|..++..|++++|++.|+++++.. +.....+.++|.++...|++++|++.++++++.+|++..+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 94 LNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 345566788999999999999999999999999864 556788999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 537 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 537 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.+|.++...|++++|...+++++++.|.++..+..+..+..
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIAR 214 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988888776666554
No 81
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.13 E-value=2.5e-10 Score=112.89 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
+.+...+..+|.++.+.|++++|++.|+++++++|++..++..+++++...|+++++.+.+++..+..|+++..+..+|.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++..+|++++|..+|+++++.+|+|+..+..++.+...
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred Hhcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999987654
No 82
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.4e-10 Score=107.37 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=105.5
Q ss_pred HHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008025 441 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520 (580)
Q Consensus 441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 520 (580)
.+..+..++...|...+..+|+++-.|.+++.+|.+.|+|+.|++..+++++++|+++.+|..||.+|+.+|+|++|++.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 34455666677777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhh
Q 008025 521 CTKAINLDKKNVKAYLRRGTAREMLGYYK---EAIEDFSYALVL 561 (580)
Q Consensus 521 ~~~al~l~p~~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~l 561 (580)
|+|+|+++|+|...+.+|..+-.++++.. .+...++.+..+
T Consensus 172 ykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 172 YKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred HHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 99999999999999999999988888766 444444444443
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.2e-10 Score=110.10 Aligned_cols=116 Identities=33% Similarity=0.518 Sum_probs=105.4
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
...++....+...|+..+++|+|..|.+.|..+|.++|++ +..|.+++.++..+|+.++|+.+|++++++|+.+.+
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 4567788899999999999999999999999999999986 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
++...|.|+..++++++|+++|++++++..+ ......+.+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLRE 362 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence 9999999999999999999999999999876 444444433
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=9.6e-10 Score=105.70 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK--- 533 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~--- 533 (580)
....+..++.+|..+++.|+|++|+..|+++++.+|+++ .+++.+|.+|..++++++|+..|+++++.+|++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456778999999999999999999999999999999875 68899999999999999999999999999998876
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 534 AYLRRGTAREML--------GYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 534 a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
+++.+|.++... +++++|++.|+++++.+|++..++..+.
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 799999999987 8899999999999999999987765443
No 85
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.12 E-value=1.8e-10 Score=91.07 Aligned_cols=82 Identities=27% Similarity=0.404 Sum_probs=74.5
Q ss_pred HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025 476 KDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (580)
Q Consensus 476 ~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 553 (580)
.+|+|++|+..|+++++.+|. +..+++.+|.||+++|+|++|++.+++ ++.++.+...++.+|.++.++|+|++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567888899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHH
Q 008025 554 DFSYA 558 (580)
Q Consensus 554 ~~~~a 558 (580)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.10 E-value=3e-09 Score=96.37 Aligned_cols=106 Identities=19% Similarity=0.146 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
...+..++.+|..+..+|+|++|+..|++++.+.|+. ..+++++|.+|..+|++++|++.|+++++++|.+...+.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 4567888999999999999999999999999987763 4689999999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q 008025 538 RGTARE-------MLGYYK-------EAIEDFSYALVLEPTNK 566 (580)
Q Consensus 538 lg~~~~-------~~g~~~-------~A~~~~~~al~l~p~~~ 566 (580)
+|.++. .+|+++ +|+..|++++.++|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999 777766 66777778888888654
No 87
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.10 E-value=1.5e-09 Score=119.56 Aligned_cols=124 Identities=10% Similarity=-0.018 Sum_probs=107.4
Q ss_pred hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
+...+.......|+....++.+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++
T Consensus 61 A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~ 140 (656)
T PRK15174 61 GLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF 140 (656)
T ss_pred hHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33334445556678888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
|++..++..++.++..+|++++|++.++++++..|+++.++..+
T Consensus 141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~ 184 (656)
T PRK15174 141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184 (656)
T ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999888877554
No 88
>PLN02789 farnesyltranstransferase
Probab=99.08 E-value=1.5e-09 Score=107.87 Aligned_cols=122 Identities=17% Similarity=0.116 Sum_probs=109.9
Q ss_pred chhchHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~--~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a 534 (580)
+..+|++..+|+.++.++.+.++. ++++++++++++.+|++..+|+.++.++..+++|++++++++++|+.+|+|..+
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 345678888999999999888874 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 535 YLRRGTAREML---GYY----KEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 535 ~~~lg~~~~~~---g~~----~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
|++++.++.++ +.+ ++++++..++++++|+|..+|..+..+...
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 99999999876 333 578899999999999999999999887653
No 89
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=5.5e-10 Score=83.58 Aligned_cols=64 Identities=30% Similarity=0.381 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 503 ~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
.+|..+++.|+|++|++.|+++++.+|++..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3455555555555555555555555555555555555555555555555555555555555543
No 90
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.07 E-value=1.6e-09 Score=127.45 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=114.1
Q ss_pred HhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcC
Q 008025 447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT--------------YYSNRAAAYLESG 512 (580)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~--------------~~~~la~~~~~~~ 512 (580)
..+...+.+....+|++...+..+|.+++++|++++|+..|+++++++|++.. ....+|.++.+.|
T Consensus 286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 34444455556667888999999999999999999999999999999998642 2245688899999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 513 SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 513 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
++++|++.|+++++++|++..+++.+|.++...|++++|+++|+++++++|++..++..+..+.
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988777664
No 91
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.07 E-value=3.2e-09 Score=119.35 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=111.1
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
.+..+..+..+|..+.+.|++++|++.|+++++++|++..++..++.++...|++++|++.++++++.+|++.. ++.+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.++...|++++|+..++++++++|++..++..++.+..
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877653
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.06 E-value=4.6e-09 Score=100.95 Aligned_cols=117 Identities=17% Similarity=0.083 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLES--------GSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~al~l~p~ 530 (580)
....+++.+|..+++.|++++|+..|+++++.+|++.. +++.+|.++++. +++++|++.++++++.+|+
T Consensus 68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 34468899999999999999999999999999998765 799999999987 7899999999999999999
Q ss_pred CHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhh
Q 008025 531 NVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTN---KRASLSADRLRKV 578 (580)
Q Consensus 531 ~~~a~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~ 578 (580)
+..++ +.+|..+...|++++|+..|+++++..|++ +.++..++.+...
T Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 86542 467888999999999999999999998765 4778888776654
No 93
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=4.7e-09 Score=104.77 Aligned_cols=118 Identities=19% Similarity=0.119 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
+.....+|..+..++..|++++|+..++..++..|+|+.++...+.++++.++.++|++.+++++.++|+....++++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 35566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|.+.|++++|+..+++.+..+|+|+..|..|++.+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 88888888888888888888888888888888877654
No 94
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.05 E-value=6.7e-10 Score=83.09 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=61.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (580)
+.+|..+++.|+|++|++.|+++++.+|++..+++.+|.++..+|++++|++.|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 95
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.8e-09 Score=96.60 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=104.6
Q ss_pred ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcC
Q 008025 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNN----------ATYYSNRAAAYLESG 512 (580)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~ 512 (580)
..|.....++......+.+.||.+|+.|+|.+|...|..|+.. .|.+ ...+.|.+.|++..+
T Consensus 165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE 244 (329)
T ss_pred ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence 4555566666777889999999999999999999999998842 3443 356889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025 513 SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 513 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 569 (580)
+|-++++++...+..+|+|.++||.+|.++...-+.++|.++|+++++++|.-..+-
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999999999999999999999999999999999999999999999999876543
No 96
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.04 E-value=4.5e-09 Score=123.57 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=111.9
Q ss_pred HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------
Q 008025 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA------------------ 507 (580)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~------------------ 507 (580)
...+...+.+....+|.+..+++.+|.++..+|++++|++.|+++++++|++..++..++.+
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 33444445555566778888999999999999999999999999999999988776655544
Q ss_pred ------------------------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 508 ------------------------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 508 ------------------------~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
+...|++++|++.|+++++++|+++.+++.+|.+|.++|++++|++.|+++++++|
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44679999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 008025 564 TNKRASLSADRL 575 (580)
Q Consensus 564 ~~~~~~~~l~~l 575 (580)
+++.++..++.+
T Consensus 527 ~~~~~~~a~al~ 538 (1157)
T PRK11447 527 NDPEQVYAYGLY 538 (1157)
T ss_pred CCHHHHHHHHHH
Confidence 999888766543
No 97
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.04 E-value=3.3e-10 Score=112.90 Aligned_cols=116 Identities=41% Similarity=0.544 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
+..+...++.++..++|+.|+..|.|+++++|+++.++.+++.++++.++|..|+.++.++++++|.+.++|+.+|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 544 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 544 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
.++++.+|+..|++...+.|+++.+...+..+.+.+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987764
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.03 E-value=2.5e-09 Score=93.10 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=89.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 485 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 485 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+.|+++++++|++....+.+|.+++..+++++|++.++++++++|++..+++++|.++..+|++++|..+|+++++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008025 565 NKRASLSADRLRKV 578 (580)
Q Consensus 565 ~~~~~~~l~~l~~~ 578 (580)
++..+..++.+...
T Consensus 84 ~~~~~~~la~~~~~ 97 (135)
T TIGR02552 84 DPRPYFHAAECLLA 97 (135)
T ss_pred ChHHHHHHHHHHHH
Confidence 99999999887654
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=5.2e-09 Score=96.64 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=110.6
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.+|++..+ .+++..++..|+-+++.....++...+|.+...+..+|......|+|.+|+..++++.+++|++.++|..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44666677 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
|.+|.+.|++++|...|.+++++.|+++...++++...
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 99999999999999999999999999999999998764
No 100
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.00 E-value=1e-08 Score=87.01 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAYL 536 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~ 536 (580)
....++..|...++.|+|.+|++.|+......|.. ..+...++.+|++.++|++|+..+++-++++|+++ .++|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45788999999999999999999999999988764 67899999999999999999999999999999875 4899
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 537 RRGTAREMLGY---------------YKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 537 ~lg~~~~~~g~---------------~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
..|++++.+.. ..+|...|++.++..|+...+-....
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK 140 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 99999999887 89999999999999999988765544
No 101
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.1e-09 Score=98.96 Aligned_cols=115 Identities=32% Similarity=0.378 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
..+..+...|+.+|..++|..|+..|.++|.++|..+.+|.+++.||+++++++.+.+++.++++++|+..+++|.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHH
Q 008025 542 REMLGYYKEAIEDFSYALVLEP-----TNKRASLSADRLR 576 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~l~~l~ 576 (580)
+.+...|++|+..++++..+.. .-.+....|...+
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999976532 2234555554443
No 102
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=1.4e-08 Score=95.21 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=103.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHH
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGT 540 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~ 540 (580)
.|+.|..+++.|+|.+|...|.+-++..|++ +.++|.||.+++.+|+|++|.+.|..+++-.|+. +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999986 6899999999999999999999999999998866 578999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+...+|+.++|...|+++++..|+...+......+++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~~ 260 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALKA 260 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 9999999999999999999999999998887776644
No 103
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.94 E-value=1.4e-08 Score=116.98 Aligned_cols=121 Identities=19% Similarity=0.088 Sum_probs=111.7
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
.....|++...++.+|..+.+.|++++|+..|+++++.+|++..++.+++.++...++ .+|++.+++++++.|+++..+
T Consensus 762 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 3345567788899999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.++|.++..+|++++|.++|+++++++|.++.++..++.+..
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887654
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=9.9e-09 Score=104.16 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=92.1
Q ss_pred hccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------------------------
Q 008025 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---------------------------------- 495 (580)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---------------------------------- 495 (580)
+..+....+.+|++.+++..+|..|.++|.-.+|++++.+.+...|
T Consensus 339 i~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fL 418 (579)
T KOG1125|consen 339 ISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFL 418 (579)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHH
Confidence 3344455556666777777777777777777777777777764322
Q ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 496 ---------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 496 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
.+++++..||.+|+..++|++|+.+|+.||..+|++...|.+||-.+..-.+.++|+..|++|++|.|+..
T Consensus 419 eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 419 EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence 13566777777778888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 008025 567 RASLSADRL 575 (580)
Q Consensus 567 ~~~~~l~~l 575 (580)
.++++++.-
T Consensus 499 R~RyNlgIS 507 (579)
T KOG1125|consen 499 RVRYNLGIS 507 (579)
T ss_pred eeehhhhhh
Confidence 888777754
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=5e-08 Score=89.37 Aligned_cols=125 Identities=20% Similarity=0.118 Sum_probs=109.9
Q ss_pred cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
.+.....++|.+.-.+...-.+...+|+--+||+.+++.++.-++|.++|..++.+|+..++|++|.-||++.+-+.|.+
T Consensus 108 ~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 108 YYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence 33445556677777777777788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 532 VKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+..+..+|.+++.+| +++-|.++|.++++++|.+-.+++.+-.+.
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999877 788999999999999998877776654443
No 106
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.90 E-value=4.2e-08 Score=110.38 Aligned_cols=112 Identities=14% Similarity=-0.026 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
....+..++..+...|++++|++.++++++..|++..++..+|.++...|++++|++.++++++++|++..+++.+|.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
..++++++|++.++++++..|+++.+...-..
T Consensus 438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999987765443
No 107
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.5e-08 Score=96.10 Aligned_cols=110 Identities=34% Similarity=0.476 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
+.+.-+...||.||+.++|..|+..|.+.|+..-.+ ...|.|++.|.+.+|+|..|++++.+++.++|++.+++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 467888999999999999999999999999985443 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
-+.|++.++++.+|..+++..++++-+...+...
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l 192 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIEL 192 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 9999999999999998888887776555444433
No 108
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.89 E-value=1.5e-08 Score=103.10 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=94.6
Q ss_pred HHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519 (580)
Q Consensus 440 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 519 (580)
.+...+...+...+...+..+|.+...++.+|.++++.|+|++|+..++++++++|++..+|+.+|.+|+.+|+|++|++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444555555556666677788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008025 520 DCTKAINLDKKNVKAYLRRGTAREMLG 546 (580)
Q Consensus 520 ~~~~al~l~p~~~~a~~~lg~~~~~~g 546 (580)
+|+++++++|++..++..++.+...+.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988876663
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=1.9e-08 Score=105.15 Aligned_cols=107 Identities=29% Similarity=0.229 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA--DCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~l~p~~~~a~~~ 537 (580)
.+..+..|+..|..+..+|++.+|.+.|..++.++|++......+|.++.+.|+..-|.. .+..++++||.++++||.
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999888888 999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
+|.++.++|+.++|.++|+.++++++.+|
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999998876
No 110
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.88 E-value=4.2e-08 Score=101.96 Aligned_cols=112 Identities=17% Similarity=0.075 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLRRGTAR 542 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~lg~~~ 542 (580)
...+..+|..+.+.|++++|+..|+++++.+|++..+++.+|.+|.+.|++++|++.++++++.+|++ ..++..++.+|
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 33566788888999999999999999999999988899999999999999999999999999988876 45678889999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
...|++++|.+.++++++.+|+.... ..++.+.
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~ 292 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADLL-LALAQLL 292 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence 99999999999999999999877544 5555543
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.88 E-value=1.7e-08 Score=87.20 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=84.0
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 490 AIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 490 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
...+. ++.-+..+.+|..++..|++++|++.|+-+..++|.+...|++||.++..+|+|++|+.+|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 44566 77889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 008025 569 SLSADRLRKVF 579 (580)
Q Consensus 569 ~~~l~~l~~~~ 579 (580)
..+++.+.-++
T Consensus 106 ~~~ag~c~L~l 116 (157)
T PRK15363 106 PWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHc
Confidence 99999886543
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=4.7e-08 Score=97.76 Aligned_cols=125 Identities=18% Similarity=0.078 Sum_probs=110.1
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
.......|++...+...+.+++..++.++|++.+++++.++|+....+.++|.+|++.|++++|+..+++.+..+|+++.
T Consensus 330 ~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 330 QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 33455678888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.|..++.+|..+|+-.++...+-....+.-+-..+...+...++.
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999888888777777777777766666666665544
No 113
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.87 E-value=1.1e-08 Score=78.48 Aligned_cols=71 Identities=30% Similarity=0.424 Sum_probs=50.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 505 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
..+|...++|++|+++++++++++|+++..|+.+|.++..+|++++|.++|+++++..|++..+......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 45667777777777777777777777777777777777777777777777777777777777666655543
No 114
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.86 E-value=6.5e-08 Score=79.22 Aligned_cols=104 Identities=25% Similarity=0.269 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRR 538 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~l 538 (580)
....+...|..+...|+.+.|++.|.+++.+.|+.+.+|+|++.+|.-+|+.++|+.++++++++.-+. ..+|..+
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 345566678888999999999999999999999999999999999999999999999999999996544 3578999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
|.+|..+|+-+.|...|+.+-++.....
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 9999999999999999999988876543
No 115
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.86 E-value=6.4e-08 Score=102.97 Aligned_cols=134 Identities=19% Similarity=0.148 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008025 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL 509 (580)
Q Consensus 430 ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~ 509 (580)
+.++..+........+...+.......+.++|....+|+.+|.+|-++|+.++++...-.|-.++|++.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 33343333333344555555555566778889999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 510 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 510 ~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
++|++++|.-+|.+||+.+|.+.+.++.++.+|.++|++..|...|++.+++.|
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999999
No 116
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2e-08 Score=101.57 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=110.1
Q ss_pred ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----GN---NATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~----p~---~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
..+.+.....|.++-.+.++|...++.+.|.+|+.+|++++..- ++ -...+.|||-+|.+++.|++|+.+|++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 33344445567888899999999999999999999999999432 22 234589999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 524 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+|.+.|.++.++...|.+|..+|+++.|+++|.+++-+.|+|.-+...|+...+
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888887776543
No 117
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.84 E-value=5.7e-08 Score=100.93 Aligned_cols=115 Identities=12% Similarity=-0.012 Sum_probs=102.3
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
..+.....++.+|..+.+.|++++|++.|+++++.+|.+ ...+..++.+|.+.|++++|++.++++++.+|+... +..
T Consensus 209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~ 287 (389)
T PRK11788 209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLA 287 (389)
T ss_pred HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHH
Confidence 345667788999999999999999999999999998876 467889999999999999999999999999998754 488
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
++.++...|++++|++.++++++.+|++......+..
T Consensus 288 la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 288 LAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 9999999999999999999999999998877654443
No 118
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.83 E-value=7.1e-08 Score=111.09 Aligned_cols=118 Identities=23% Similarity=0.225 Sum_probs=88.7
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..+.....++.++..+...|++++|+..++++++..|++...|+.++.+|...|++++|++.|+++++.+|++..+++.+
T Consensus 562 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 641 (899)
T TIGR02917 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641 (899)
T ss_pred hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34455566677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+.++...|++++|.+.|+++++.+|++..++..+..+.
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 77777777777777777777777777777766665543
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.82 E-value=1.3e-07 Score=100.69 Aligned_cols=118 Identities=19% Similarity=0.168 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
...+.+...||.++..|++++|++.+..+++++|.+..+|+.||.+|.++|+.+++.+..-.|-.++|++...|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
..++|++++|.-||.+|++++|.+.........+.+.+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT 254 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 99999999999999999999999988888877777653
No 120
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.82 E-value=1.1e-07 Score=79.68 Aligned_cols=96 Identities=21% Similarity=0.038 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRR 538 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~l 538 (580)
.++|+.|..+-..|+.++|+..|+++++..... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467999999999999999999999999975443 678999999999999999999999999999898 88888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 008025 539 GTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~ 560 (580)
+.++...|++++|++.+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.9e-07 Score=85.68 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=117.2
Q ss_pred HHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519 (580)
Q Consensus 440 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 519 (580)
++.......+...+.+....-|...+.....|..+-..|+|++|+++|+..++-+|.+...+-..-.+...+|+-.+|++
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 33433344444343443344467777888899999999999999999999999999999888888888889999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 520 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
.+.+.++..+++.++|..++.+|...|+|++|.-|+++.+-+.|-++.....++.++
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888887764
No 122
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.81 E-value=1.4e-08 Score=76.55 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=29.6
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 476 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
++|+|++|++.|+++++.+|++..+++.++.||++.|++++|.+.+++++..+|+++..+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 44444555555555555555444444455555555555555555555544444444443333
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=1.6e-07 Score=89.39 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
..+......++..|++..+|+..++.++..|-++..+..++.||...|+...|+.++..+-++..++.+++|..+.+++.
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 34455666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.|+.+.++.-.+.+++++|+....+-.+..+++.
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999988888777664
No 124
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.80 E-value=1.7e-08 Score=76.17 Aligned_cols=68 Identities=24% Similarity=0.209 Sum_probs=63.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+++.|+|++|++.|+++++.+|++..+++.++.+|.+.|++++|.+.++++++.+|+++..+..+++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 36789999999999999999999999999999999999999999999999999999999888887764
No 125
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.79 E-value=5.9e-08 Score=84.93 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--
Q 008025 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS----------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-- 547 (580)
Q Consensus 480 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~-- 547 (580)
|++|.+.++.....+|.+++.+++-|.+++++.+ +++|+.-|+++|.++|+...+++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999999987744 5678899999999999999999999999987754
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 548 ---------YKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 548 ---------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
|++|.++|+++...+|+|...+..|....+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 899999999999999999988888876654
No 126
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=3.8e-08 Score=87.84 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
...+..++++|..|-..|-++-|.-.|.+++.+.|+.+++++.+|..+...|+|+.|.+.|+-.+++||.+-.++.|+|+
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
+++.-|+|+-|.+.+.+-.+-+|+||.-
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 9999999999999999999999999843
No 127
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.78 E-value=5.4e-08 Score=97.80 Aligned_cols=71 Identities=20% Similarity=0.119 Sum_probs=67.2
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
..+|+.+..++++|..+++.|+|++|+..|+++++++|++..+ |+|+|.+|.++|++++|++++++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999999999999999999865 9999999999999999999999999984
No 128
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=3.6e-08 Score=96.78 Aligned_cols=117 Identities=21% Similarity=0.158 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
.-++.++.+.|+..|.+|++++|.+.|.+++.-+.....++++.|..+..+|+.++|+++|-+...+--++.+.++.++.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34566778899999999999999999999999988889999999999999999999999999988888899999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+|..+.+..+|++++-++..+-|+++.++..|+.+..
T Consensus 567 iye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998864
No 129
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.77 E-value=3.2e-08 Score=99.37 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=66.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA---YLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 493 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.+|+++.+|+++|.+|+++|+|++|+.+|+++|+++|++.++ |||+|.+|..+|++++|+++|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999865 999999999999999999999999998
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.76 E-value=4.4e-08 Score=75.07 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=65.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
...++++++|++|++.++++++++|+++..|..+|.+|.++|++++|+++++++++.+|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999999999999999888766553
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.75 E-value=1.3e-07 Score=83.31 Aligned_cols=97 Identities=21% Similarity=0.130 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
-...+.+.+|..++..|+|++|+..|+++++..|+. ..+.+.++.+++.+|+|++|+..++. +.-.+-.+.++..+
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHH
Confidence 346778889999999999999999999999987664 46888999999999999999999976 34444556788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al 559 (580)
|.+|...|++++|++.|++++
T Consensus 125 Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999875
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.75 E-value=3e-07 Score=87.99 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY 535 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~ 535 (580)
.....++..|..+++.|+|++|++.|++++...|....+ .+.+|.+|+++++|++|+..+++.++++|++ ..++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356678999999999999999999999999999998654 4899999999999999999999999999877 4589
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 536 LRRGTAREMLG---------------Y---YKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 536 ~~lg~~~~~~g---------------~---~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
|.+|.++..++ + ..+|++.|++.++..|+...+.....+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 99999875554 1 357889999999999998755554443
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.72 E-value=2.8e-07 Score=86.05 Aligned_cols=113 Identities=22% Similarity=0.208 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAY 535 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~ 535 (580)
.....++..|..+++.|+|.+|++.|++.+...|.. ..+.+.+|.++++.++|.+|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 346788999999999999999999999999998875 68899999999999999999999999999999864 589
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 536 LRRGTAREMLG-----------YYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 536 ~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
+.+|.+++.+. ...+|+..|+..++..|+...+......
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 99999987653 3468999999999999998765544333
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.71 E-value=2.3e-07 Score=99.54 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.+..++.+|++|..+..+|+|++|..+|.++++.++++ .-.++.+|+.|++.|+++.|..+|+++++..|++.+...-+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 35567788999999999999999999999999998887 67788999999999999999999999999999999999999
Q ss_pred HHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 539 GTAREMLG----YYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 539 g~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
|.+|...+ ..+.|...+.++++..|.|.++|..++++..+
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 99988775 67889999999999999999999998887653
No 135
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.69 E-value=2e-07 Score=100.03 Aligned_cols=122 Identities=19% Similarity=0.157 Sum_probs=111.3
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN- 531 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~- 531 (580)
.-..++.++.++..+++.+|-.|+|..+...+..++...-+ -++.+|++|.+|..+|+|++|.++|.++++.++++
T Consensus 262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~ 341 (1018)
T KOG2002|consen 262 AYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF 341 (1018)
T ss_pred HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc
Confidence 33456788899999999999999999999999999987643 35679999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.-.++.+|..|...|+++.|+.+|+++++..|++......|+.+..
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 7789999999999999999999999999999999999999998764
No 136
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.69 E-value=2.6e-07 Score=102.69 Aligned_cols=125 Identities=12% Similarity=-0.037 Sum_probs=88.7
Q ss_pred hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
.+...+...+.+....+|........+...+...|++++|+.++++++...|........+|.+|..+|+|++|++.|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33345555555666666666433447777777778888888888888743344444444457788888888888888888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 524 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
+++.+|+++.+++.++.++...++.++|++.++++.+.+|++...
T Consensus 128 aL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 128 SLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 888888888888877788888888888888888888888875554
No 137
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.3e-07 Score=89.34 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
....+.+++.++.+.++|.+|+...+++|.++|+|..++|.+|.++..+++|+.|+.+|+++++++|+|-.+...+..+.
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHcCCHHHH-HHHHHHHHhhCC
Q 008025 543 EMLGYYKEA-IEDFSYALVLEP 563 (580)
Q Consensus 543 ~~~g~~~~A-~~~~~~al~l~p 563 (580)
.+..++.+. .+.|.+.+..-+
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 877766655 777877776544
No 138
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.67 E-value=3.6e-08 Score=97.45 Aligned_cols=116 Identities=18% Similarity=0.105 Sum_probs=84.2
Q ss_pred HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
...+...+.+....+|++......++..+...|+++++.+.+.+..+..|.++..+..+|.+|..+|++++|+.+|++++
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 34444555666777889999999999999999999999999998888888888999999999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 526 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 526 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+.+|+++..+..+|.++...|++++|.+.++++++.
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999998764
No 139
>PRK11906 transcriptional regulator; Provisional
Probab=98.67 E-value=5.3e-07 Score=90.87 Aligned_cols=114 Identities=14% Similarity=-0.042 Sum_probs=101.5
Q ss_pred hhchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 458 FNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~---------g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
..+|..+.+|..++.+++.. .+-.+|.+.-+++++++|.|+.++..+|.++...++++.|+..+++++.++
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 45577788888888887654 345789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
|+.+.+|+..|.++...|+.++|.+.++++++++|....+-..
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence 9999999999999999999999999999999999986655443
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.1e-08 Score=93.39 Aligned_cols=118 Identities=25% Similarity=0.327 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------------TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
++.+.++++-.|.+++...+.+.|+.+|+++|.++|++. ..+-..|+-.++.|+|.+|.++|.++|.+
T Consensus 199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 357788999999999999999999999999999999863 46778899999999999999999999999
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 528 DKKN----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 528 ~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+|++ +..|++++.+..++|+.++|+..++.++++++.-..++...+++..
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 9976 5679999999999999999999999999999998887777666654
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=2.6e-07 Score=83.66 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=91.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcC
Q 008025 472 NQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLG 546 (580)
Q Consensus 472 ~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g 546 (580)
+-+|-.++|..+.+.+.+.++.++.+ ..+++++|.++..++++++|+..|++++++.|+. ..+++++|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 34556677888888887776666665 6778999999999999999999999999997763 458999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 547 YYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 547 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++++|+++|+++++++|.....+..++.+..
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 9999999999999999999999888887765
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.64 E-value=3.9e-07 Score=96.52 Aligned_cols=119 Identities=20% Similarity=0.141 Sum_probs=97.8
Q ss_pred hhhccccccchhchHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Q 008025 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKD--------KQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQA 517 (580)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------g~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A 517 (580)
.+...+.+....+|+.+.++-.++.++... .+..++.+...+++.+ ++.++.+|..+|..+...|++++|
T Consensus 360 ~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A 439 (517)
T PRK10153 360 KASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEA 439 (517)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHH
Confidence 444445566667788888887777766543 2345666667776664 777888999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025 518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 518 ~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
...++++++++| +..+|..+|.++...|++++|.+.|++|+.++|.++.
T Consensus 440 ~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 440 YQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999 5889999999999999999999999999999999874
No 143
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=6.5e-08 Score=91.48 Aligned_cols=114 Identities=13% Similarity=0.152 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KNVKAYLRR 538 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~~l 538 (580)
.+.++.--.|.-||-.++.+-|+.+|++.+++.-.+++.+.|+|.|.+.-++++-++..+++++..-. .-.+.|||+
T Consensus 322 ~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 322 INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 33333333444444444455555555555555444445555555555555555555555555444422 113345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
|.+....|++.-|..+|+-++.-++++.+++++|+.+
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 5555555555555555555555555555555544443
No 144
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2.2e-07 Score=96.81 Aligned_cols=111 Identities=16% Similarity=0.069 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
++.+.+.+|...+++++|.++.++++..++++|-....|+.+|.|+.++++++.|.++|.+++.++|++..+|+|++.+|
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 34455666677777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
...++..+|...++++++-+-++...|.+..
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 8888888888888888888766666665543
No 145
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=5.2e-07 Score=92.49 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=94.6
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----KAY 535 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~----~a~ 535 (580)
.+.....+..+|..+..+|++++|+..++++++++|++..++..+|.+|++.|++++|+++++++++..|... ..|
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 4566677788999999999999999999999999999999999999999999999999999999999987433 356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
+.++.++..+|++++|+..|++++...|
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 7899999999999999999999987776
No 146
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=8.4e-07 Score=98.73 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
+.....+..+|..+..+|+|++|++.|+++++.+|+++.++..++.+|.+.+++++|++.++++++.+|++... ..++.
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay 177 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY 177 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence 34455666678899999999999999999999999999999999999999999999999999999999985554 55566
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++..++++.+|++.++++++++|++.+++..+-.+..
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ 214 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6666788878999999999999999999877765543
No 147
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=2.7e-06 Score=80.83 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=95.7
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLR 537 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~ 537 (580)
.+.+.+..+++++..+....+.+.|+..+.|+++.+|++..+-..+|.+++..|+|++|++.++++++.||++ ++..-.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 3456678888999999999999999999999999999999999999999999999999999999999999987 457778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 569 (580)
+-.||.++|+.++....+.++.+..++..-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l 286 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAEL 286 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence 88999999999999999999998877654433
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.55 E-value=1.3e-06 Score=91.18 Aligned_cols=117 Identities=11% Similarity=-0.017 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY--SNRAAAYLESGSFLQAEADCTKAINLDKKNV--KAYL 536 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~l~p~~~--~a~~ 536 (580)
+++...+..++..+...|++++|++.++++++..|++.... ..+...++..++.+++++.++++++.+|+++ ..+.
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 35788899999999999999999999999999999987532 3344444556889999999999999999999 8888
Q ss_pred HHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHhh
Q 008025 537 RRGTAREMLGYYKEAIEDFS--YALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 537 ~lg~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.+|.++++.|++++|+++|+ ++++.+|++.... .++.+...
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~ 382 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQ 382 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHH
Confidence 99999999999999999999 6888889877644 77776543
No 149
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.54 E-value=6.2e-07 Score=92.36 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
.++..+...+..++|.+.++..++.++..|++.+.+...|..+..+|+-++|..+...+++.|+.+.-.|.-+|+++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 546 GYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 546 g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++|++|++||+.|+.++|+|...+.-+.-+..
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQI 120 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 55555555555555555555555555544433
No 150
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=5e-06 Score=79.03 Aligned_cols=121 Identities=13% Similarity=0.064 Sum_probs=92.0
Q ss_pred hccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
.....+....+++...+-..+|+++..+|+|++|++.++.+++.+|+. +.+...|..||.++|+.++.+.++.++.+.+
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 334445556677777788888888888888888888888888888875 5677788888888888888888888888877
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
++ ..+...++..-....-.++|..++.+-+...|+-...+..
T Consensus 280 ~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl 321 (389)
T COG2956 280 TG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL 321 (389)
T ss_pred CC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence 63 4555666677777777788888888888888875555443
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.3e-06 Score=83.13 Aligned_cols=97 Identities=21% Similarity=0.116 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 008025 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFS 556 (580)
Q Consensus 480 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~ 556 (580)
.++-+..++.-++.+|+|.+-|..||.+|+.++++..|...|.+++++.|+|++.+..+|.+++... +-.++.+.|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4456677788899999999999999999999999999999999999999999999999999988664 5789999999
Q ss_pred HHHhhCCCCHHHHHHHHHHH
Q 008025 557 YALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 557 ~al~l~p~~~~~~~~l~~l~ 576 (580)
++++++|+|..+...|+.-.
T Consensus 218 ~al~~D~~~iral~lLA~~a 237 (287)
T COG4235 218 QALALDPANIRALSLLAFAA 237 (287)
T ss_pred HHHhcCCccHHHHHHHHHHH
Confidence 99999999999999988653
No 152
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=3.4e-07 Score=86.73 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=114.1
Q ss_pred hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
+...+.+..+.-|.+...+...+.++-.++++++|+++|+.+++++|.+.++....|.-|+--++.+-|+.+|++.+++.
T Consensus 275 AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 275 ALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 33444555666788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHH
Q 008025 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP---TNKRASLSADRL 575 (580)
Q Consensus 529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~l~~l 575 (580)
-.+++.+.|+|.|.+..++++-++.+|++++...- .-.++|++++.+
T Consensus 355 ~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 355 AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 99999999999999999999999999999998844 346889888765
No 153
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.50 E-value=1.3e-07 Score=73.41 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.+++++|.+|..+|+|++|+++|++++++. |.-..+++++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555555555555555555431 111334555555555555555555555555543
No 154
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.49 E-value=3.6e-07 Score=70.97 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---G----NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~---p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
|..+..+.++|.++..+|+|++|+++|++++++. + .-..+++++|.+|..+|++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5677899999999999999999999999999762 1 236789999999999999999999999999864
No 155
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=1.6e-06 Score=95.68 Aligned_cols=115 Identities=10% Similarity=-0.062 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV------- 532 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~------- 532 (580)
.+.+..++..+...+...+++++|++.++.+++..|+...+|+.+|.+|++.+++.++.-. +++...+.+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 4556666666666666677777777777777777777666666666666666655544433 4444433333
Q ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 533 ------------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 533 ------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
.+++.+|.||.++|++++|.+.|+++++++|+|+.++++++...
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 56666677776777777777777777777776666666666543
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=2.6e-06 Score=86.42 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
+....++..++..++..+|++.++++++..|.+...+...+..+++.++++.|++.+++++++.|++.+.|+.|+.+|..
T Consensus 201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 35566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025 545 LGYYKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~~~~~ 569 (580)
+|++++|+..++.+=....++.+..
T Consensus 281 ~~d~e~ALlaLNs~Pm~~~~~k~~~ 305 (395)
T PF09295_consen 281 LGDFENALLALNSCPMLTYKDKYKL 305 (395)
T ss_pred cCCHHHHHHHHhcCcCCCCccchhh
Confidence 9999999998885544444444443
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.46 E-value=1.4e-06 Score=79.22 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 495 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
+....+++++|..+...|++++|+.+|++++++.|+. ..+++++|.++..+|++++|+++++++++++|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3457789999999999999999999999999987764 4689999999999999999999999999999999999888
Q ss_pred HHHHHhh
Q 008025 572 ADRLRKV 578 (580)
Q Consensus 572 l~~l~~~ 578 (580)
++.+...
T Consensus 112 lg~~~~~ 118 (172)
T PRK02603 112 IAVIYHK 118 (172)
T ss_pred HHHHHHH
Confidence 8877543
No 158
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.8e-07 Score=89.61 Aligned_cols=118 Identities=16% Similarity=0.027 Sum_probs=110.2
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
...|+.+-.|+..|..|+..+++.+|.++|.|+..++|....+|...|..+...++.++|+.+|..|-++-|......+.
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 34578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+|.=|..+++++-|.+.|.+|+.+.|+|+-++..++-+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVV 423 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence 99999999999999999999999999999988887754
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.44 E-value=1.8e-06 Score=68.69 Aligned_cols=78 Identities=32% Similarity=0.399 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+++++|.++...+++++|++.++++++..|++..+++.+|.++...+++++|.++|++++++.|.+...+..++.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999988877776543
No 160
>PRK11906 transcriptional regulator; Provisional
Probab=98.44 E-value=1.1e-05 Score=81.66 Aligned_cols=111 Identities=11% Similarity=-0.003 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC
Q 008025 466 IAKEKGNQAYKDKQ---WLKAISFYTEAI---KLNGNNATYYSNRAAAYLES---------GSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 466 ~~~~~g~~~~~~g~---~~~Ai~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~l~p~ 530 (580)
.++.+|..++..+. .+.|+..|.+++ +++|+...+|..++.||+.. .+-.+|.+..+++++++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 45778888876654 578999999999 99999999999999999866 2456899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
++.++..+|.++...++++.|...|++++.++|+.+.++...+.+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754
No 161
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.43 E-value=3.9e-06 Score=87.55 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=97.1
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--- 528 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--- 528 (580)
.+.-......+|..|...++|.+|+..|++++.. +|.-..++.+||.+|++.|+|++|..+|++|+++.
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 4555666677999999999999999999999986 34446789999999999999999999999999984
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC---HHHHHHHHHHHhh
Q 008025 529 -----KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP-----TN---KRASLSADRLRKV 578 (580)
Q Consensus 529 -----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~---~~~~~~l~~l~~~ 578 (580)
|.-...+.+++.++..++++++|+.++++++++.- ++ +..+.+++.+...
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 23355788899999999999999999999998743 23 3455555555443
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.42 E-value=6.5e-06 Score=87.38 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHc--CC
Q 008025 463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--------SFLQAEADCTKAINL--DK 529 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~l--~p 529 (580)
.+..++.+|..++..++ +.+|+.+|+++++++|+++.+|..++.+|.... +..++.+..++++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45566778988887655 889999999999999999999999999886642 345667777777774 78
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
..+.+|.-+|..+...|++++|...++++++++| +..++..++.+...
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~ 465 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL 465 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999 57899998877543
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=3.3e-06 Score=71.25 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
....++.+|.++++.|++++|+..|++++..+|++ ..+++.+|.++.+++++++|++.++++++..|++..+.
T Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 36788999999999999999999999999998885 67899999999999999999999999999999987654
No 164
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.39 E-value=4.2e-06 Score=88.04 Aligned_cols=116 Identities=22% Similarity=0.102 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
...|...+..+.+.++-++|..++.++-..+|..+..|+.+|.++...|++.+|.+.|..++.+||++......+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 544 MLGYYKEAIE--DFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 544 ~~g~~~~A~~--~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
+.|+..-|.+ .+..+++++|.++++|++++.+.++.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 9999888888 99999999999999999999998764
No 165
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.8e-06 Score=81.49 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=101.2
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-----------------
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ----------------- 516 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----------------- 516 (580)
.+.+..++++.+.+...|+.+.+.++.++|+-.|+.+..+.|.+.+.|..|-.+|+..+++++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 344556678888999999999999999999999999999999998888888888887776554
Q ss_pred -------------------HHHHHHHHHHcCCCCHH---------------------------------HHHHHHHHHHH
Q 008025 517 -------------------AEADCTKAINLDKKNVK---------------------------------AYLRRGTAREM 544 (580)
Q Consensus 517 -------------------A~~~~~~al~l~p~~~~---------------------------------a~~~lg~~~~~ 544 (580)
|.++++++++++|++.. .+..+|..+..
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA 483 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 44455555555665432 45667778888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
.+.+++|..+|..++.++|++...+..+..+++..
T Consensus 484 ~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 88899999999999999999999999999988754
No 166
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.36 E-value=6e-06 Score=84.58 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------------------------------------HHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------------------------TYYSNRAAA 507 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-------------------------------------~~~~~la~~ 507 (580)
+..+..+..++..|++++|++.++++++.+|++. ..+..+|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 3344455556666666666666666555555443 344567778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
+..+|++++|++.++++++++|++..++..+|.++++.|++++|+++++++++..|.++
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 89999999999999999999999999999999999999999999999999999987544
No 167
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.36 E-value=5.4e-06 Score=86.49 Aligned_cols=105 Identities=20% Similarity=0.187 Sum_probs=92.7
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAEADCTKAINLD- 528 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~- 528 (580)
.+++.-+..+.+++..|.+.|+|++|..++++++++.. .-...+.+++.++..++++++|..++++++++.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999998732 235678899999999999999999999999983
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 529 -------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 529 -------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
+.-+..+.++|.+|+.+|+|++|.+.|++++++.
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2336789999999999999999999999999885
No 168
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.36 E-value=5.7e-06 Score=85.35 Aligned_cols=121 Identities=15% Similarity=0.053 Sum_probs=96.9
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
+.+|+.-+.|+..-...+.+.+|+.|...|.++....|. ...|+.-+.....+++.++|++.++++++..|++++.|+.
T Consensus 612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm 690 (913)
T KOG0495|consen 612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM 690 (913)
T ss_pred HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345555566666666666666777777777776665554 3667777777788889999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
+|.++.++++.+.|.+.|.+.++..|.....|..|..+..+.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887654
No 169
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.34 E-value=1.6e-05 Score=83.08 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.+.....+...|..+.++|++++|.++|.++.+..|++. .+...++.+++..|++++|.+.+++.++.+|+++.++..+
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll 193 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLA 193 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344445566678888888888888888888888877764 4555568888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 569 (580)
+.++...|++++|.+.+++.++....++...
T Consensus 194 ~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~ 224 (409)
T TIGR00540 194 EEAYIRSGAWQALDDIIDNMAKAGLFDDEEF 224 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 8888888888888888888887755544433
No 170
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.33 E-value=1.2e-05 Score=83.52 Aligned_cols=115 Identities=11% Similarity=0.000 Sum_probs=87.2
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
...+++.......+..+...|+.++|.+.++++++. +.+.......+.+ ..++++++++.+++.++.+|+++..++.
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 344567778888888888899999999998888884 4444444333333 3488888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+|.++...+++++|+++|+++++++|++... ..++.+.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~ 371 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADAL 371 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHH
Confidence 8888888888888888888888888887652 2444443
No 171
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=3e-05 Score=68.25 Aligned_cols=115 Identities=22% Similarity=0.082 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY 535 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~ 535 (580)
..+...+......+..+++..+...+++.++.+|+. ..+.+.+|.+++..|++++|.+.|+++++..|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345566777777778999999999999999999998 6788899999999999999999999999988665 4588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++++.++...|+|++|+..++. +.-.+-.+.++..++.+..
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYL 129 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHH
Confidence 9999999999999999999976 3334455666666666643
No 172
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=3.7e-06 Score=87.93 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=122.1
Q ss_pred CCcccceecccCCChHHHHHHHHHHHHHHHh-------------HHHhhhccccccchhchHHHHHHHHHHHHHHHccCH
Q 008025 414 CPTSVSFIARHGGDRFLLDTVQNMYASLQEQ-------------ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW 480 (580)
Q Consensus 414 lp~g~q~~~~~~~d~~ll~la~~le~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 480 (580)
.|.--.+.|..-.+..+++.+..+-...... +.......++.....+|-....||.+|.+..+.+++
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 3444455555566666666666655433322 111222233344556777889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 481 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
+.|.++|..++.++|++.++|+|++.+|++.++-.+|...+.++++.+-++.+.|-|.-.+....|.+++|++.|++.+.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCC
Q 008025 561 LEP 563 (580)
Q Consensus 561 l~p 563 (580)
+..
T Consensus 616 ~~~ 618 (777)
T KOG1128|consen 616 LRK 618 (777)
T ss_pred hhh
Confidence 754
No 173
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.2e-05 Score=79.35 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
|+++..+..+|..|-+.|+-.+|..++-...+.-|.+.+..-.|+..|+...-+++|+++|+++--+.|+..+-....+.
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555667777777777777777777777788
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
|+.+.|+|++|.+.|++...-.|.+.+.+..|-++
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 88888888888888888888888888887776655
No 174
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=4.7e-06 Score=92.00 Aligned_cols=107 Identities=14% Similarity=0.035 Sum_probs=91.6
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------------------ATYYSNRAAAYLESGSF 514 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------------------~~~~~~la~~~~~~~~~ 514 (580)
......+|+....++.+|..+++.+++.++... +++..-+.+ ..+++.||.||-++|++
T Consensus 55 ~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~ 132 (906)
T PRK14720 55 EEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN 132 (906)
T ss_pred HHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh
Confidence 345566788888999999999988887776665 555554444 48999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 515 ~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
++|.+.|+++++++|+|+.+..++|..|... ++++|++++.+|++..=
T Consensus 133 ~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 133 KKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999988743
No 175
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.29 E-value=3.3e-07 Score=87.72 Aligned_cols=99 Identities=32% Similarity=0.451 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
.....+...+..|+++.|++.|..++.++|..+..|-.++.+++++++...|+.+|..+++++|+..+.|-.++.+...+
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 44556777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 008025 546 GYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 546 g~~~~A~~~~~~al~l~p~ 564 (580)
|++++|..+++.+.+++=+
T Consensus 196 g~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hchHHHHHHHHHHHhcccc
Confidence 9999999999999998643
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.27 E-value=2.7e-05 Score=72.69 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAY 535 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~ 535 (580)
..+..+++.|...++.|+|++|++.|++.....|.. ..+...++.++++.++|++|+...++-+++.|+++ .++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 457889999999999999999999999999988775 57899999999999999999999999999998775 478
Q ss_pred HHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 536 LRRGTAREMLGY--------YKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 536 ~~lg~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
|.+|.+++..-+ ..+|+..|+..++..|+...+-....+|.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~ 160 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV 160 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 888999775432 57899999999999999876665555543
No 177
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.26 E-value=3.3e-05 Score=72.12 Aligned_cols=116 Identities=22% Similarity=0.147 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG-----------SFLQAEADCTKAIN 526 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~ 526 (580)
+...++.+.+|..+++.|+|++|+..|++.++..|++ ..+++.+|.+++++. ...+|+..|++.++
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999987 468999999987653 24589999999999
Q ss_pred cCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 527 LDKKNVK-----------------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 527 l~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
..|++.. --+..|..|++.|.|..|+.-++.+++..|+.+.....+..+.
T Consensus 119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~ 185 (203)
T PF13525_consen 119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLA 185 (203)
T ss_dssp H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 9998632 2244577899999999999999999999999987766665543
No 178
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.24 E-value=2.4e-05 Score=81.26 Aligned_cols=106 Identities=10% Similarity=0.021 Sum_probs=91.1
Q ss_pred HHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 465 EIAKEK-GNQAYKDKQWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 465 ~~~~~~-g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
..++.+ +....++|+++.|..+|.++.+.+|++..+. ...+.++...|++++|++.+++.++.+|+++.++..++.+|
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~ 197 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 334444 6666999999999999999999999985443 44599999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASL 570 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~ 570 (580)
...|++++|.+.+.+..+..+.++....
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999988777655433
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=5.3e-06 Score=65.36 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
+...++.+|.++++.|+|++|+..+++ .+.++.+...++.+|.|++++|+|++|++.++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 556788899999999999999999999 8888988899999999999999999999999875
No 180
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.22 E-value=1.1e-05 Score=79.19 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
+..-.....+.+.+..| .+.+|...|+...+..+.++..++.++.|++.+|+|++|.+.++++++.+|+++.++.|+.
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 33334444555555555 5999999999988888889999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 540 TAREMLGYY-KEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 540 ~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
.+...+|+. +.+.+++++..+.+|+.+......
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999988 778889999999999988766544
No 181
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.21 E-value=1.7e-05 Score=82.14 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=98.6
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..++..+.+-..|..+...|+-++|.++...+++.++.+..+|+-+|.++..-.+|++|+++|+.|++++|+|-..|.-+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
+.+..++++|+.....-.+.+++.|.....|..++.
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888888888888888888888888777766554
No 182
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.15 E-value=5.5e-06 Score=89.23 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=108.6
Q ss_pred cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-------------------------------
Q 008025 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY------------------------------- 500 (580)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~------------------------------- 500 (580)
.+.+....++..+.++..+|.+|..--|...|.++|++|.++++.+.++
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~ 559 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF 559 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence 3344455567778888899999988888889999999999998876433
Q ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 501 -----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 501 -----~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
|..+|..|.+-+++.+|+.+++.+++.+|++.+.|..+|.+|...|+|..|.+.|.++..++|.+..+.+..+.+
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 556777777888899999999999999999999999999999999999999999999999999999988887776
Q ss_pred Hhh
Q 008025 576 RKV 578 (580)
Q Consensus 576 ~~~ 578 (580)
+..
T Consensus 640 ecd 642 (1238)
T KOG1127|consen 640 ECD 642 (1238)
T ss_pred HHH
Confidence 654
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.14 E-value=1.6e-05 Score=76.73 Aligned_cols=108 Identities=10% Similarity=0.008 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHHHHHHhHHHhhhccccccchhchHH---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHH
Q 008025 426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQS---AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NAT 499 (580)
Q Consensus 426 ~d~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~ 499 (580)
.+...+..+..+.. ...+...+...+...+...|+. ..+++.+|..++..|+|++|+..|+++++..|+ .++
T Consensus 141 ~e~~~Y~~A~~l~~--~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQ--DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 34445555444321 1122233333344444444544 578999999999999999999999999999887 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
+++.+|.+|..+|++++|.+.|+++++..|+...+.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999999887543
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.14 E-value=2.3e-06 Score=54.10 Aligned_cols=32 Identities=38% Similarity=0.429 Sum_probs=21.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008025 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (580)
Q Consensus 521 ~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 552 (580)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.00013 Score=64.05 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGT 540 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~ 540 (580)
.+-.+.+|+.+...|++.+|...|++++. +.-+++..+..++++.+.++++..|.+.+++..+.+|. .+.....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 34557799999999999999999999987 46778899999999999999999999999999999885 4678888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
+|..+|++.+|+..|+.++...|+-.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 99999999999999999999998744
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.10 E-value=6.7e-06 Score=55.72 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
+++.+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444444
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=0.00019 Score=68.79 Aligned_cols=114 Identities=15% Similarity=0.041 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG---------------S---FLQAEAD 520 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~---------------~---~~~A~~~ 520 (580)
....+.+.+|.++++.++|++|+..|++.++++|++ ..+++.+|.++..++ | ..+|++.
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~ 146 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD 146 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence 344567899999999999999999999999999886 568899999876654 1 3578899
Q ss_pred HHHHHHcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 521 CTKAINLDKKNVK---A--------------YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 521 ~~~al~l~p~~~~---a--------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+++.++..|+... + -+..|.-|.+.|+|..|+.-++.+++..|+.+.....|..+
T Consensus 147 ~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l 218 (243)
T PRK10866 147 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLM 218 (243)
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 9999999998632 1 23346668999999999999999999999887666555544
No 188
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=6.9e-05 Score=76.20 Aligned_cols=105 Identities=12% Similarity=0.010 Sum_probs=95.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551 (580)
Q Consensus 472 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A 551 (580)
..+...+++++|++.|++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+.+.++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344567899999999999988875 6667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 552 IEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 552 ~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++..+++.++.|++-..|..|+.+...+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 9999999999999999999999987543
No 189
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.08 E-value=0.00013 Score=77.08 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~ 507 (580)
.+....+..+|..+++.|++++|...|...|+.+|++..++..+..+
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 35556667778888888888888888888887777764444433333
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.07 E-value=8.4e-06 Score=55.22 Aligned_cols=44 Identities=30% Similarity=0.273 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35789999999999999999999999999999999999998763
No 191
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.04 E-value=5.1e-05 Score=74.60 Aligned_cols=115 Identities=16% Similarity=-0.008 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
..+.....-.++++.+|++.|.+.+++.-+.+.+..-.....+++.+..| ++.+|...|++..+..+.++..+..++.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34555567788999999999999999998888776666666666666666 5999999999988888889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++..+|+|++|++.++++++.+|++++.+.++..+..
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876644
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.04 E-value=5.8e-05 Score=63.26 Aligned_cols=76 Identities=20% Similarity=0.074 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT---NKRASLSA 572 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l 572 (580)
.+++++|+++-.+|+.++|+.+|+++++...+. ..++..+|.++..+|++++|+..++++++..|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999986544 568999999999999999999999999999898 66665554
Q ss_pred HH
Q 008025 573 DR 574 (580)
Q Consensus 573 ~~ 574 (580)
+.
T Consensus 82 Al 83 (120)
T PF12688_consen 82 AL 83 (120)
T ss_pred HH
Confidence 43
No 193
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.03 E-value=4.9e-05 Score=82.19 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=91.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYLRRGTAREM- 544 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~- 544 (580)
....+...+.+++|++|++...++++.+|+|..++..+|.++..+++ .++|.++|..+.+++|++.-+|-.|+..|.+
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~ 84 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERY 84 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHcc
Confidence 34567778899999999999999999999999999999999999998 9999999999999999999999999999987
Q ss_pred --cCCHHHHHHHHHHHHhhCCCCH
Q 008025 545 --LGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 545 --~g~~~~A~~~~~~al~l~p~~~ 566 (580)
..+++++-.+|++++.+.++..
T Consensus 85 ~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 85 NDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred chhhhhhHhHHHHHHHHHhhhhhh
Confidence 4578999999999998877654
No 194
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=7.7e-05 Score=73.30 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
-|+--+..++..++|..|+.+-+|+++.+|++..++...|.++..+++.++|+-.|+.|+.+.|..-..|..+-.+|...
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 546 GYYKEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 546 g~~~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
|++.||...-+.+++.-|+++..+..+
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 555555555555555555555555544
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=9.6e-05 Score=65.69 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
.....|.++|.++++.+.++.||+...|+|+++|.+-.++..++.+|-++..|++|+++|.+.++.+|...++.-...
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 456677889999999999999999999999999999999999999999999999999999999999998876654443
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.98 E-value=7.2e-06 Score=51.85 Aligned_cols=34 Identities=47% Similarity=0.658 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025 486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519 (580)
Q Consensus 486 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 519 (580)
.|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999864
No 197
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.96 E-value=9.2e-05 Score=76.75 Aligned_cols=115 Identities=13% Similarity=0.028 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
-....|+..++....+++.++|++.++++++..|.....|..+|+++-++++.+.|.+.|...++..|+.+..|..++.+
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 34567888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
-.+.|+.-.|...++++.-.+|++...|...-+++
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 99999999999999999999999998887665554
No 198
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=0.00015 Score=63.82 Aligned_cols=82 Identities=23% Similarity=0.137 Sum_probs=61.9
Q ss_pred hchHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FLQA 517 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~----------g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A 517 (580)
.+|.+++.+++.|.++... .-+++|+..|+++|.++|+..++++++|.+|..++. |++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567888888888777654 345789999999999999999999999999987753 8899
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Q 008025 518 EADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 518 ~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
.++|++|...+|+|......|-.
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999998765544433
No 199
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.93 E-value=1.6e-05 Score=50.39 Aligned_cols=32 Identities=44% Similarity=0.636 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
.+|+++|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 200
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.90 E-value=2.1e-05 Score=49.88 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
.+|+++|.+|..++++++|+++|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56777777777777777777777777777775
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.89 E-value=5.4e-05 Score=66.05 Aligned_cols=90 Identities=11% Similarity=0.068 Sum_probs=81.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025 490 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 490 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 569 (580)
+..+.++.-+..+..|.-++..|++++|...|+-...++|.+++.|+.||.++..+++|++|+..|-.+..++++|+...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 33445566788899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhh
Q 008025 570 LSADRLRKVF 579 (580)
Q Consensus 570 ~~l~~l~~~~ 579 (580)
...+.+.-++
T Consensus 109 f~agqC~l~l 118 (165)
T PRK15331 109 FFTGQCQLLM 118 (165)
T ss_pred chHHHHHHHh
Confidence 8888876543
No 202
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00024 Score=68.56 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------cCC-
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--------------LDK- 529 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------l~p- 529 (580)
..-..+|.++|+.|+|++|+..|.-+...+.-+.+.+.+|+.|++-+|+|.+|.+...++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 34455788889999999999999888877666677788888888777777766665544321 110
Q ss_pred -----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 530 -----------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 530 -----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
+..+-...++.+++..-.|++|++.|.+.+.-+|+-.....+++
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~A 192 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMA 192 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHH
Confidence 11122233444455555566666666666665555444443333
No 203
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.84 E-value=4.1e-05 Score=48.47 Aligned_cols=32 Identities=47% Similarity=0.632 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
++|+.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
No 204
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.83 E-value=0.00058 Score=72.31 Aligned_cols=99 Identities=15% Similarity=0.037 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
..+++.++..+-..|++++|+++.+++|+..|...+.|+..|.+|-+.|++.+|.++++.+-++|..+-..-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 008025 544 MLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 544 ~~g~~~~A~~~~~~al~l~ 562 (580)
+.|+.++|.+.+....+-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999998776554
No 205
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.82 E-value=2.4e-05 Score=74.90 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.-..|+-|+++|.|++|+.||.+++.++|.|+..+.|++.+|+++++|..|+.+++.++.++.....+|...+..+..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999998777777766665544
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=6.6e-05 Score=75.82 Aligned_cols=113 Identities=27% Similarity=0.249 Sum_probs=101.3
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---GSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
+-++.++.++..|+-.+.......|+..|.++++..|.....+.+++.++++. ++.-.|+.++.++++++|...++|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 34577888889999999999999999999999999999999999999999887 477789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
+.|+.++.+++++.+|+++...+....|.+..-...
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDVARQNF 484 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence 999999999999999999999888889866544433
No 207
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.82 E-value=4.7e-05 Score=48.16 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
.+|+.+|.+|+.+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777764
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.78 E-value=0.00081 Score=59.13 Aligned_cols=97 Identities=23% Similarity=0.169 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------------ATYYSNRAAAYLESGSFLQAEADCT 522 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~ 522 (580)
..+...|......++...++..+.+++.+...+ ..+...++..+...|++++|++.++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556777777888899999999999874331 2456778888899999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+++.++|.+-.+|..+-.+|..+|++.+|++.|+++.+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988654
No 209
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.00015 Score=71.55 Aligned_cols=101 Identities=26% Similarity=0.255 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC--CC-
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NN----ATYYSNRAAAYLES-GSFLQAEADCTKAINLDK--KN- 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--~~----~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p--~~- 531 (580)
..+..+.+.+..+ +..++++|+.+|++++++.- ++ ...+.++|.+|... +++++|+++|++|+++.. +.
T Consensus 73 ~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 3445555555555 55599999999999998732 22 56889999999998 999999999999999843 22
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
...+.++|.++.++++|++|++.|++.....-
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 34678889999999999999999999987643
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.72 E-value=0.00044 Score=59.08 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC---------------HHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS---------------FLQAEADCTK 523 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~---------------~~~A~~~~~~ 523 (580)
-..++...++..+++.++|++|+..|++.++++|.++ -+++.+|.+++++.+ ..+|...|++
T Consensus 45 ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~ 124 (142)
T PF13512_consen 45 YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQ 124 (142)
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHH
Confidence 3457788999999999999999999999999999874 578999999999887 8899999999
Q ss_pred HHHcCCCCHHH
Q 008025 524 AINLDKKNVKA 534 (580)
Q Consensus 524 al~l~p~~~~a 534 (580)
.++..|++..+
T Consensus 125 lv~~yP~S~ya 135 (142)
T PF13512_consen 125 LVRRYPNSEYA 135 (142)
T ss_pred HHHHCcCChhH
Confidence 99999987654
No 211
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00044 Score=71.19 Aligned_cols=128 Identities=12% Similarity=0.043 Sum_probs=94.3
Q ss_pred HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521 (580)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 521 (580)
...+...+......-....|++..+++..-.++.+..+|++|+...++-....-.+ ...+..+.|.++++..++|++.+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 33333333333333344446777788888888999999999995544433222222 23379999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 522 ~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
+ -+++.........|..++++++|++|.+.|+..++.+.++.+......
T Consensus 103 ~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 103 K---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred h---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 8 567777788899999999999999999999999998887766655443
No 212
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.70 E-value=0.00067 Score=66.81 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------------------CCCCHHHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------------------------------NGNNATYYSNRAAAYLE 510 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-------------------------------~p~~~~~~~~la~~~~~ 510 (580)
+++......+..+...|++++|.+...++++. .|+++..++.||..+++
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 44555566677777777777777776666644 45555555666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 511 SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 511 ~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
.+.|.+|.++++.+++..| +...|..+|.++.++|+.++|.++++.++.
T Consensus 341 ~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 341 NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6666666666666666554 344455556666666666666666665553
No 213
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.00032 Score=69.15 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008025 462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---- 530 (580)
.-+..+..+|..+... +++++|+++|++++++... . ..++..++.++.++++|++|++.|++.....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4467888999999999 9999999999999997332 1 467789999999999999999999999875322
Q ss_pred --CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025 531 --NV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565 (580)
Q Consensus 531 --~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 565 (580)
+. ..++..++++..+|++..|.+.+++....+|..
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 12 345677889999999999999999999999854
No 214
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00012 Score=68.91 Aligned_cols=126 Identities=20% Similarity=0.192 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhhccccccchhc--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008025 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQ--KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA 505 (580)
Q Consensus 428 ~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la 505 (580)
..+..-.-+++.++...+........ ..++. ...+....+.|...++.|+|++|++.|+.+++...-++..-++++
T Consensus 108 ~~L~~~~lqLqaAIkYse~Dl~g~rs--LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA 185 (459)
T KOG4340|consen 108 PALHSRVLQLQAAIKYSEGDLPGSRS--LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA 185 (459)
T ss_pred HHHHHHHHHHHHHHhcccccCcchHH--HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence 45555555666666544333222111 01111 256788899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 506 AAYLESGSFLQAEADCTKAINL----DKK----------------N---------VKAYLRRGTAREMLGYYKEAIEDF 555 (580)
Q Consensus 506 ~~~~~~~~~~~A~~~~~~al~l----~p~----------------~---------~~a~~~lg~~~~~~g~~~~A~~~~ 555 (580)
.|+++.++|+.|+++..+.++. +|. | .++++.++-++++.++++.|++.+
T Consensus 186 LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 9999999999999998887776 332 1 347777888899999999998876
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.68 E-value=6.6e-05 Score=73.65 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINL----DKK-- 530 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~-- 530 (580)
.-.++-++|+.|+-.|+|++||..-+.-+.+..+ ...++.|+|+||.-+|+++.|+++|.+.+.+ ...
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 3455666777777777777777666655555332 1356667777777777777777777665444 211
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
.++..|.+|..|.-+.++++|+.++++-+.+.
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445666666666667777777666665543
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0006 Score=63.32 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----N--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a 534 (580)
+.+......+|...++.||.+.|..+|++.-+. + ...-..+.+.+.+|...++|.+|...+.+.++.||.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 455666778999999999999999999855432 2 2245678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q 008025 535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTN---KRASLSADRLR 576 (580)
Q Consensus 535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~ 576 (580)
.++++.|+..+|+..+|++.+++++++.|.. .....+|..+.
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999964 33444444443
No 217
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.59 E-value=0.0012 Score=53.61 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=75.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN------------NATYYSNRAAAYLESGSFLQAEADCTKAINL-------D 528 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-------~ 528 (580)
...|...++.|-|++|...|.++++.... +.-++..|+.++..+|+|++++...+++|.. +
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 44677778889999999999999987422 3567889999999999999999888888765 4
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 529 KKN----VKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 529 p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.+. +.+-++++.++..+|+.++|.+.|+++-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 443 456688999999999999999999999876
No 218
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.59 E-value=0.00035 Score=48.88 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
+.+|.+|+.++++|+|++|..+.+.+++++|+|..+......+.+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888877777776654
No 219
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.58 E-value=0.00067 Score=61.24 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=87.8
Q ss_pred HhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
..++..+.+.....|+.+.+++.+|..+...|+|+.|.+.|+..++++|.+--++.|+|..++--|+|+.|.+.+.+-.+
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 34455566677778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 527 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 557 (580)
.||+++---..+=.. ...-+..+|...+.+
T Consensus 162 ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~q 191 (297)
T COG4785 162 DDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQ 191 (297)
T ss_pred cCCCChHHHHHHHHH-HhhCCHHHHHHHHHH
Confidence 999887422211111 123355666655543
No 220
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0003 Score=70.62 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA-IKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINL----- 527 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----- 527 (580)
+.+..++.+.+.++..|+|.+|.+.+... +...|. ...+|+|+|.++++++.|..+..+|.+|++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 55677888999999999999999987653 222232 3457899999999999999999999999961
Q ss_pred ----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 528 ----DK---------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 528 ----~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
.| ...+..||.|+.|...|+.-.|.+||.++.+..-.+|..|..++++.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12 34678999999999999999999999999999999999999998864
No 221
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.56 E-value=0.0017 Score=54.16 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 497 NATYYSNRAAAYLESGS---FLQAEADCTKAIN-LDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
.....+++++++....+ .++.+..++..++ -.|. .-+..|.++..++++++|++++++++..++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34678889999987764 6788899999997 4443 35677889999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 008025 572 ADRLRKVF 579 (580)
Q Consensus 572 l~~l~~~~ 579 (580)
...++++|
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 88888775
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.00063 Score=64.29 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
.+..++++|.+|+.++.+|+|+.|...|..+++-.|++ ++.++.+|.|...+++.++|-..|+++++..|+...+..
T Consensus 174 s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 174 STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34557899999999999999999999999999987765 689999999999999999999999999999999887655
Q ss_pred HH
Q 008025 537 RR 538 (580)
Q Consensus 537 ~l 538 (580)
..
T Consensus 254 Ak 255 (262)
T COG1729 254 AK 255 (262)
T ss_pred HH
Confidence 43
No 223
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0046 Score=63.97 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=78.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK------------------ 529 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p------------------ 529 (580)
++.+.++|+.+..++|+..++ .+++.+.......|.+++++++|++|+..|+..++.+.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 789999999999999999998 45666677889999999999999999999999866642
Q ss_pred -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 530 -------------KNVKAYLRRGTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 530 -------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 559 (580)
+..+.+||.+.++...|+|.+|++.+++++
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 245688999999999999999999999993
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=0.00044 Score=68.06 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------C
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----G--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDK------K 530 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~----p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p------~ 530 (580)
.-.++.++|+++.-.|+++.|+++|.+.+.+. . ..+...|.||++|.-+.++++|+.+..+=+++.. .
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34678899999999999999999999987652 2 2356788999999999999999999998777643 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
...+++.+|.+|..+|..++|..+.++.+++
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999998888765
No 225
>PRK10941 hypothetical protein; Provisional
Probab=97.45 E-value=0.0013 Score=63.46 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.+.++=..+.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|..+++..++..|+.+.+-.-+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3344555556666666666666666666666666666666666666666666666666666666655554433
No 226
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.40 E-value=0.00088 Score=55.43 Aligned_cols=64 Identities=28% Similarity=0.291 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+-..|.+..+.|+.+.|++.|.++|.+.|.++.+|+|++.++.-+|+.++|.+.+++++++...
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 3456778889999999999999999999999999999999999999999999999999999544
No 227
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0012 Score=63.77 Aligned_cols=87 Identities=20% Similarity=0.182 Sum_probs=75.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008025 472 NQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550 (580)
Q Consensus 472 ~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 550 (580)
..++.+.||..|+..++-.+.++.+.- .....+|.||+.+|+|++|++.|+-+.+-+..+.+.+.+++.+++.+|+|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456778899999999998887765443 6677899999999999999999999998777788999999999999999999
Q ss_pred HHHHHHHH
Q 008025 551 AIEDFSYA 558 (580)
Q Consensus 551 A~~~~~~a 558 (580)
|+....++
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98876655
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.32 E-value=0.00038 Score=43.95 Aligned_cols=30 Identities=50% Similarity=0.706 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
+|+.+|.+|..+|++++|.++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555554
No 229
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0021 Score=60.88 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------HHHc--
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK----------AINL-- 527 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~----------al~l-- 527 (580)
.|+.-..+..+|.+|+...+|..|.++|++.-.+.|+...+.+..+..+++.+.+..|+..... .+++
T Consensus 40 ~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa 119 (459)
T KOG4340|consen 40 SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA 119 (459)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444555666777777777777777777777777776666666666666665555555443321 1111
Q ss_pred ------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 528 ------------------DK--KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 528 ------------------~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
-| +.+....+.|.++++.|+|++|.+-|+.+++...-++-.
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 11 334456666666666666666666666666665444433
No 230
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.31 E-value=0.00042 Score=43.74 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
.+|+.+|.+|.++|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46677777777777777777777777777764
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0083 Score=57.29 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK---------------------- 523 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~---------------------- 523 (580)
..+..+......+++.+|...|..++...|++..+...++.||...|+++.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 3455667777778888888888888888888877888888888888777655544432
Q ss_pred ------------HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 524 ------------AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 524 ------------al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
.+..+|++.++-+.++..|...|++++|.+.+-..++.+.
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2333799999999999999999999999999988887754
No 232
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.0058 Score=54.64 Aligned_cols=101 Identities=16% Similarity=0.004 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRG 539 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~lg 539 (580)
......++..+...+++++|+..+++++....+. .-+-.+|+.+.++++++++|+..++.... +++.. .--.+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 3455678999999999999999999999764432 35667899999999999999988876433 22222 345579
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
.++...|+-++|+..|+++++.+++..
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999999999999999999999985443
No 233
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00046 Score=63.26 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
-+..-|..++.-.+|..|+.+|.++|.++|..+..|-|.+.+|.++++++...+..++++++.|+....++.++....
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 344567777888899999999999999999999999999999999999999999999999999999999999887643
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.24 E-value=0.0091 Score=55.64 Aligned_cols=108 Identities=26% Similarity=0.297 Sum_probs=87.2
Q ss_pred HHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Q 008025 468 KEKGN-QAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGTAR 542 (580)
Q Consensus 468 ~~~g~-~~~~~g~~~~Ai~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~ 542 (580)
...+. .+...+++++|+..|.+++...| .....+..++..+...+++++++..+.++++..+. ....+..++..+
T Consensus 133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 133 ALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 33444 78889999999999999988776 45666777777788888999999999999999988 688899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
...+++++|...+.++++..|.....+..+...
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 999999999999999999988855555544443
No 235
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.22 E-value=0.012 Score=52.12 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
.+...+..+++..+..+++..|...+++..+.+|. .++.+..++.+|-.+|++.+|...|+.++...|+ +.+....+
T Consensus 122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~ 200 (251)
T COG4700 122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYA 200 (251)
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHH
Confidence 56678889999999999999999999999999886 4677888999999999999999999999999984 67778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 008025 540 TAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~ 560 (580)
..+.++|+.+++...+....+
T Consensus 201 e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 201 EMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcchhHHHHHHHHHHH
Confidence 999999999888877765543
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.19 E-value=0.026 Score=52.44 Aligned_cols=103 Identities=29% Similarity=0.341 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
.....+...+..+...++++.++..+.+++...+. ....+..++.++...+++++|+..+.+++...|.....+..++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence 34555566666677888999999999999999988 68889999999999999999999999999999987778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
.+...++++++...++++++..|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 245 LLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888777899999999999998886
No 237
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.17 E-value=0.00028 Score=71.31 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008025 434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (580)
Q Consensus 434 a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~ 513 (580)
..+..+.+.......+...+.+.++.+++.+..+-+++.++++.++|..|+..+.++++++|....+|+.+|.+.+.+++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34445555566666666777777888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 514 FLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 514 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
+.+|...|++...+.|+...+.-.+-.|-.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999998877766544
No 238
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.0068 Score=59.59 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=87.3
Q ss_pred hccccccchhchHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 450 KSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
...+.............|...|...++ .++.+.|...|+.+++..|.+...|......+..+++.+.|...|++++..-
T Consensus 21 R~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l 100 (280)
T PF05843_consen 21 RKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL 100 (280)
T ss_dssp HHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 333344444444456777778888777 5666669999999998888888888888888888888899999999988876
Q ss_pred CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 529 KKNV---KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 529 p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
+... ..|.....--.+.|+.+...+..+++.++.|++.......
T Consensus 101 ~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 101 PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 6544 4666666666778888888888888888888866655433
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.013 Score=54.71 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC--CCCHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAI----NLD--KKNVKA 534 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~l~--p~~~~a 534 (580)
..-.+.+.+.+++.-.|+|.-.++.|++.++.+ |.++.....|+.+.++.||.+.|..+++++- +++ ..+...
T Consensus 175 Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 175 RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 344577888999999999999999999999998 6678888999999999999999999999443 333 244567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
..+.+.+|.-.++|.+|...|.+.+..+|.++.+.++.+-+.
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 788889999999999999999999999999988877666553
No 240
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.12 E-value=0.0092 Score=64.70 Aligned_cols=119 Identities=10% Similarity=-0.075 Sum_probs=100.4
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
-....|+...+....|..+++.|++++|..+++..-...+++-..+.-+-.||..++++++|..+|++++..+|+ .+..
T Consensus 35 llkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell 113 (932)
T KOG2053|consen 35 LLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELL 113 (932)
T ss_pred HHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHH
Confidence 334556777777788999999999999998888777778888889999999999999999999999999999998 8888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHH
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRL 575 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~l~~l 575 (580)
+.+=.+|.+-++|.+=.+.--+..+..|+++ ..|....-+
T Consensus 114 ~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 8899999999999888888888888888886 445544443
No 241
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0008 Score=65.35 Aligned_cols=116 Identities=26% Similarity=0.326 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---N----------------NATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
.+...+.++..+++++|..|...|.+++.... . -...+.+++.+-++++.+..|+.....+
T Consensus 222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~ 301 (372)
T KOG0546|consen 222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA 301 (372)
T ss_pred hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence 34556688899999999999999999886421 1 1235667889999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 525 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++.++...+++|.++..+..+.++++|++.++.+....|++......+...++++
T Consensus 302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999988888776653
No 242
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.013 Score=56.54 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
-++-.|.+++.+.+..|+|..|+....+++.++|.+..+++.-+.|+++++++++|.++|+..++++-..
T Consensus 117 lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 117 LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 4566788999999999999999999999999999999999999999999999999999999998887543
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.00 E-value=0.0095 Score=60.82 Aligned_cols=131 Identities=11% Similarity=-0.049 Sum_probs=87.6
Q ss_pred HHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------------
Q 008025 438 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------------------- 496 (580)
Q Consensus 438 e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--------------------- 496 (580)
+++-++.+....+....+..+.+++-+++|..++.... .-..+|.++|+|+++....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 33344444443333334445555666666666665422 2345566666666543110
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHH
Q 008025 497 ----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTAREMLGYYKEAIEDFSYALVL-EPTNKRAS 569 (580)
Q Consensus 497 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~ 569 (580)
..-+...+|+|..++|+.++|++.++..++.+|. +-..++++-.++..++.|.+++..+.+.=++ .|+.+...
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 0234578999999999999999999999998875 5678999999999999999999999887544 34444443
Q ss_pred H
Q 008025 570 L 570 (580)
Q Consensus 570 ~ 570 (580)
+
T Consensus 334 Y 334 (539)
T PF04184_consen 334 Y 334 (539)
T ss_pred H
Confidence 3
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.98 E-value=0.0051 Score=65.04 Aligned_cols=105 Identities=21% Similarity=0.083 Sum_probs=85.6
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
...|+..-.++..|..+..+|+.++|++.|++++....+ ..-.++.++++++-+.+|++|.+++.+.++.+. +.+
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSk 339 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSK 339 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHH
Confidence 345777888899999999999999999999998853322 346789999999999999999999999999764 444
Q ss_pred H--HHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 008025 534 A--YLRRGTAREMLGYY-------KEAIEDFSYALVLEP 563 (580)
Q Consensus 534 a--~~~lg~~~~~~g~~-------~~A~~~~~~al~l~p 563 (580)
+ .|..|.++..+++. ++|.+.|+++-.+-.
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 3 35569999999999 888888887766543
No 245
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.98 E-value=0.028 Score=55.67 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=49.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 548 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~ 548 (580)
-+...-+.||++.|-.++.++-++.++ .-.....++......+++..|.....++++..|.++.+....-.+|...|++
T Consensus 124 aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 124 AAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 344444555555555555555555222 2334445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhh
Q 008025 549 KEAIEDFSYALVL 561 (580)
Q Consensus 549 ~~A~~~~~~al~l 561 (580)
.+....+.+.-+-
T Consensus 204 ~~ll~~l~~L~ka 216 (400)
T COG3071 204 QALLAILPKLRKA 216 (400)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555544443
No 246
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.98 E-value=0.0072 Score=49.01 Aligned_cols=93 Identities=14% Similarity=0.277 Sum_probs=78.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCHHHH
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS-----------FLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~ 535 (580)
++..++.+|++-+|++..+..+...+++. ..+..-|.+++++.. ...++++|.++..+.|+.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999988765 566777877766542 4578999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
+.+|.=+-...-|+++..-.++++...
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999888777778888988888888763
No 247
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.98 E-value=0.0041 Score=43.50 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
+.++.+|..++++|+|++|.++++.+|+++|+|.++......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678899999999999999999999999999998887665544
No 248
>PRK10941 hypothetical protein; Provisional
Probab=96.94 E-value=0.022 Score=55.08 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
....++=.+|.+.++++.|+.+.++.+.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+.....++..+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999998887777654
No 249
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.022 Score=53.49 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 464 AEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 464 ~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
-..+.++|..+.+ ..++.+|.-+|+..-+..+..+...+.++.|++.+++|++|...++.++.-++++++.+.|+-
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3455566666654 356899999999998888889999999999999999999999999999999999999999998
Q ss_pred HHHHHcCCHHHH-HHHHHHHHhhCCCCHHHH
Q 008025 540 TAREMLGYYKEA-IEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 540 ~~~~~~g~~~~A-~~~~~~al~l~p~~~~~~ 569 (580)
.+-..+|.-.++ ...+.+....+|+.+-+.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 888888876554 556677777788876554
No 250
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.89 E-value=0.0027 Score=65.32 Aligned_cols=106 Identities=22% Similarity=0.149 Sum_probs=94.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025 471 GNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (580)
Q Consensus 471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 549 (580)
|......|+...|++++..++...|... ...-+|+++.++-+-...|...+.+++.++-..+-.++.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3444567999999999999999988754 457789999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 550 EAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 550 ~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
.|++.|+++++++|+++.....|..+.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999999999988877654
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.87 E-value=0.086 Score=49.66 Aligned_cols=117 Identities=17% Similarity=0.114 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCC
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS--------FLQAEADCTKAINLDKK 530 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~--------~~~A~~~~~~al~l~p~ 530 (580)
-..++...++.++++.++|++|+...++-+++.|.++ -+++.+|.+++..-+ -.+|+..+++.++..|+
T Consensus 69 ~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 69 YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 3457788899999999999999999999999998864 467788888765432 45788999999999997
Q ss_pred CHH---------------HHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 531 NVK---------------AYLR--RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 531 ~~~---------------a~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
..- +.+. .|.-|.+.|.+..|+.-++..++..|+.......|..+.+.
T Consensus 149 S~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea 213 (254)
T COG4105 149 SRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEA 213 (254)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 521 2333 36668899999999999999999999888877777776553
No 252
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.86 E-value=0.0089 Score=64.81 Aligned_cols=91 Identities=16% Similarity=0.042 Sum_probs=85.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (580)
Q Consensus 474 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 553 (580)
....++|.+|+....+.++..|+..-+....|..+.++|++++|..+++..-...+++-..+..+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 008025 554 DFSYALVLEPT 564 (580)
Q Consensus 554 ~~~~al~l~p~ 564 (580)
+|+++++.+|+
T Consensus 99 ~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 99 LYERANQKYPS 109 (932)
T ss_pred HHHHHHhhCCc
Confidence 99999999999
No 253
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.85 E-value=0.031 Score=54.93 Aligned_cols=101 Identities=13% Similarity=-0.040 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
+|..+.+...+.+..+.|...|.++++..+.....|...|...+. .++.+.|.+.|+++++..|.+...|.....-+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567777888888889999999999997666678899999999777 4566669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH
Q 008025 545 LGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~~ 566 (580)
+++.+.|...|++++..-|.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999877766
No 254
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.79 E-value=0.0024 Score=39.80 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+++++|.++.++|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555544
No 255
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.79 E-value=0.011 Score=66.55 Aligned_cols=95 Identities=8% Similarity=-0.057 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
..|..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|.+.+++.++++|++...|..+..+|.+
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 45666778888888888888887764 2333 356788888888888999999999999999999888888888889999
Q ss_pred cCCHHHHHHHHHHHHhh
Q 008025 545 LGYYKEAIEDFSYALVL 561 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l 561 (580)
.|++++|.+.+++..+.
T Consensus 541 ~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 541 SGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999988876654
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.78 E-value=0.12 Score=45.13 Aligned_cols=113 Identities=11% Similarity=-0.188 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
.-...+......-...++.+++...+.-.-.+.|+.+..-..-|+.++..|+|.+|+..++.+.+..|..+.+--.++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34567778888888899999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
++.+++.+-= .+-+++++..+ ++.+......+.
T Consensus 88 L~~~~D~~Wr-~~A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 88 LYALGDPSWR-RYADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred HHHcCChHHH-HHHHHHHhcCC-ChHHHHHHHHHH
Confidence 9999986432 33344555443 666666665554
No 257
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.76 E-value=0.0026 Score=39.56 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
+++++|.+|.++|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777776665
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.71 E-value=0.015 Score=61.43 Aligned_cols=100 Identities=17% Similarity=0.055 Sum_probs=86.4
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHH
Q 008025 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRGTAREMLGYYKEA 551 (580)
Q Consensus 476 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~~A 551 (580)
...+.+.|.+.+++..+..|+..-.++..|.++...|+.++|++.+++++...... .-.++.+++++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 35677889999999999999999999999999999999999999999998654433 34688999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 552 IEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 552 ~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
.++|.+..+.+.-.+..+.++..+
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999887766666665544
No 259
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.11 Score=49.00 Aligned_cols=106 Identities=12% Similarity=-0.002 Sum_probs=62.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
..--+++.+..+++-|...+++..+.+.+ ..+..||.++.++ +++.+|.-.|++.-+..+-.+.....++.++.
T Consensus 141 Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 141 ALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence 33445556666666666666666655433 2334444444433 24666666666666655555666666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 544 MLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 544 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
.+++|++|...++.++..++++++.+.++-.+
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 66666666666666666666666666655433
No 260
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.035 Score=58.04 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..+.+.|..+|+.++|..+++.|...+...|.| .....+++.||+.+.+.+.|.+.+++|=+.+|.++-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 456778899999999999999999999987765 56778999999999999999999999999999999888878
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
-.+...-++-++|..+..+.....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 788888899999999998877553
No 261
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.66 E-value=0.0075 Score=57.40 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
..+....+.+....+.|+.++|...|+.++++.|.+++++...|.....-++.-+|-++|-+++.++|.|.+++.+++..
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34445566777788999999999999999999999999999999999999999999999999999999999999887643
No 262
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.61 E-value=0.027 Score=56.94 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
+.-+...|...|.--..+++++.|...|++||..+..+...|...+.+-++..+...|...+++|+.+-|.--+.||..-
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 569 (580)
..-..+|+...|.+.|++-++..|+.....
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~ 178 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWL 178 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHH
Confidence 999999999999999999999999855433
No 263
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.61 E-value=0.004 Score=39.85 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
|.+||.+|.++|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555533
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.59 E-value=0.017 Score=50.65 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
....+..++..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++.+|++.|++..+.
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999887553
No 265
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.092 Score=48.43 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC---
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN--- 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p~~--- 531 (580)
+++-.-|-.+...++..+..+|+.++++++++..+. +..+..+|.+|-.- .++++|+.+|+++-+-....
T Consensus 71 hDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 71 HDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 444445555566667779999999999999987654 34456888888644 89999999999987765432
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025 532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 569 (580)
-+.+...+..-..+++|.+|+..|++...-.-+|.-..
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 23556667777899999999999999887766655433
No 266
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.57 E-value=0.063 Score=62.33 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAR 542 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~ 542 (580)
.|..+...|.+.|++++|++.|++..+. .|+ ...|..+...|.+.|++++|.+.+++..+.. +-+...|..+..+|
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3444444455555555555555554443 222 3344455555555555555555555555432 12344555555555
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 008025 543 EMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~ 560 (580)
.+.|++++|.+.|++..+
T Consensus 695 ~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.042 Score=53.23 Aligned_cols=102 Identities=16% Similarity=0.058 Sum_probs=53.1
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
..++.|.+.-+++---..++.+|+...-...++|.+-. +++.+ -.+-.++.++.+.|-|++|++..++++++++.+
T Consensus 129 lL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 129 LLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred HHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence 33444445445554555555555555555555555544 33331 222234444455555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~ 557 (580)
.-+...++.++...+++.++++..++
T Consensus 209 ~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 209 CWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555555555555555555443
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.014 Score=56.27 Aligned_cols=103 Identities=12% Similarity=0.017 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRG 539 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~lg 539 (580)
....-.++..+...|-|++|.+.-++++++++.+..+.+.++-++...++++++.++..+.-..-.+. ...|...+
T Consensus 175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 44444566777889999999999999999999999999999999999999999999987743322111 22466678
Q ss_pred HHHHHcCCHHHHHHHHHHHH--hhCCCCH
Q 008025 540 TAREMLGYYKEAIEDFSYAL--VLEPTNK 566 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al--~l~p~~~ 566 (580)
..+.+-+.|+.|++.|.+-+ +++.+|.
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 88999999999999998765 4555665
No 269
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.50 E-value=0.017 Score=57.49 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=71.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 469 EKGNQAYKDKQWLKAISFYTEAIKLNG--------NN----------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 469 ~~g~~~~~~g~~~~Ai~~~~~al~~~p--------~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
..|..++++++|..|...|..+|++.. .. ....-.+..||+.+++.+.|+++..+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 344555566666666666666665521 11 234567899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+...+...+.++..+.+|.+|...+--+.-+
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877655443
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.48 E-value=0.0051 Score=39.36 Aligned_cols=29 Identities=34% Similarity=0.397 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
+|.++|.+|.++|+|++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999966553
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.48 E-value=0.18 Score=50.88 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCC
Q 008025 463 SAEIAKEKGNQAYK---DKQWLKAISFYTEA-IKLNGNNATYYSNRAAAYLES---------GSFLQAEADCTKAINLDK 529 (580)
Q Consensus 463 ~~~~~~~~g~~~~~---~g~~~~Ai~~~~~a-l~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~l~p 529 (580)
.....+..|.++.+ .|+.++|+..+.++ ....+.+++.+..+|.+|-.+ ...++|+++|.++++++|
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 44455667777777 78888888888884 444566778888888887432 236788888888888876
Q ss_pred CC---------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 530 KN---------------------------------------------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 530 ~~---------------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+. .-.+-.+..+..-.|++++|.+++++++++.|.
T Consensus 258 ~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 258 DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 42 112233455566778999999999999999988
Q ss_pred CHHHHHHHHHHH
Q 008025 565 NKRASLSADRLR 576 (580)
Q Consensus 565 ~~~~~~~l~~l~ 576 (580)
.......+.+++
T Consensus 338 ~W~l~St~~ni~ 349 (374)
T PF13281_consen 338 AWELESTLENIK 349 (374)
T ss_pred chhHHHHHHHHH
Confidence 877776666654
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.45 E-value=0.021 Score=55.79 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----------NATYYSNRAAAYLESGSFLQAEADCTKAINLD-- 528 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-- 528 (580)
.-+.+++..+|..+-+.+||++|+-+..++.++..+ ...+++.++.++..+|+.-.|.++++++.++.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999987433 24567889999999999999999999998873
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 529 ----KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 529 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
+.......-+|.+|...|+.|.|..-|+++...-
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 2334566778999999999999999999998654
No 273
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.44 E-value=0.034 Score=44.03 Aligned_cols=65 Identities=22% Similarity=0.166 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCC
Q 008025 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGY 547 (580)
Q Consensus 483 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~~~~~g~ 547 (580)
.+..+++.++.+|++..+.+.+|..++..|++++|++.+-++++.++++ ..+.-.+=.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4677888999999999999999999999999999999999999998876 3333333334444443
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.42 E-value=0.011 Score=57.74 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------- 531 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------- 531 (580)
++...+++++...+.|+++++.|+++++...++ ..++-.||..+-.+.|+++|.-+..++.++-...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 456669999999999999999999999985543 3578899999999999999999999999884321
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
..++|.++.++..+|+.-.|.++++++.++
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 347889999999999999999999999877
No 275
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.41 E-value=0.0048 Score=56.36 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=39.6
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (580)
Q Consensus 474 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (580)
..+.++.+.|.+.|++++++.|+...-|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 44556666666677777766666666666666666666677766677777777666543
No 276
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.052 Score=55.44 Aligned_cols=95 Identities=9% Similarity=0.081 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 008025 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIEDFSYALV 560 (580)
Q Consensus 482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~ 560 (580)
.-...|+.++...+.|...|.+......+.+.+.+--+.|.+++..+|+++..|..-|.-.+..+. .+.|.+.|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345677888888888888888777666666678888888999999999999988888888777775 8888889999999
Q ss_pred hCCCCHHHHHHHHHHH
Q 008025 561 LEPTNKRASLSADRLR 576 (580)
Q Consensus 561 l~p~~~~~~~~l~~l~ 576 (580)
.+|+++..|...-++.
T Consensus 169 ~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRME 184 (568)
T ss_pred cCCCChHHHHHHHHHH
Confidence 9999888887665553
No 277
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.37 E-value=0.013 Score=55.77 Aligned_cols=66 Identities=26% Similarity=0.284 Sum_probs=61.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 509 LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 509 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
.+.|+.++|...|+.+++++|++++++..+|.....-++.-+|-++|-+++.+.|.|..++.+.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 467999999999999999999999999999999999999999999999999999999999877654
No 278
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.36 E-value=0.13 Score=59.78 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAYLRRGTA 541 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~lg~~ 541 (580)
..|..+-..|.+.|++++|++.|++..+.+ +.+...|..+...|.+.|++++|++.|++..+. .| +...|..+..+
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a 658 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 345555556666666666666666666554 334556666666666666666666666666554 33 24456666666
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 008025 542 REMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l 561 (580)
|.+.|++++|.+.+++..+.
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHc
Confidence 66666666666666666654
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.35 E-value=0.038 Score=56.61 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKNVKAYLRRGT 540 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-~p~~~~a~~~lg~ 540 (580)
..+...+|++..+.|+.++|++.|...++..|. +...+.+|..+++.+++|.++...+.|-=++ -|+.+...|..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344567999999999999999999999998776 5679999999999999999999988885433 2566777777777
Q ss_pred HHHHcC-C---------------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 541 AREMLG-Y---------------YKEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 541 ~~~~~g-~---------------~~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
+..+.. + -..|.+.+.+|.+.+|-.+.-+...
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 654421 1 2347789999999999877655443
No 280
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.35 E-value=0.044 Score=51.27 Aligned_cols=91 Identities=21% Similarity=0.166 Sum_probs=67.1
Q ss_pred HccCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCC------CHHHH
Q 008025 476 KDKQWLKAISFYTEAIKL----NGN---NATYYSNRAAAYLESGS-------FLQAEADCTKAINLDKK------NVKAY 535 (580)
Q Consensus 476 ~~g~~~~Ai~~~~~al~~----~p~---~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~l~p~------~~~a~ 535 (580)
....+++|++.|.-|+-- ... -+..+..+|++|..+++ +.+|.+.|+++++.... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 445667777777666642 111 25678899999999998 45677777777765432 35688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
|.+|.+..++|++++|.++|.+++.......
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999998755443
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.11 Score=48.34 Aligned_cols=103 Identities=18% Similarity=0.091 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KKN 531 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-----p~~ 531 (580)
.+..|..-+..|...++|++|..++.++.+-..++ +.++-.-+....++..+.++..+|+++..+. |+-
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34455666777777888999999999988655444 3455566667777888889999999988874 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 565 (580)
+..-..++-=..+.-+.++|++.|++++.+-.++
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 3333334444456678888999998888774443
No 282
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.29 E-value=0.0064 Score=36.94 Aligned_cols=31 Identities=42% Similarity=0.562 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+++++|.++..++++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555443
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.24 E-value=0.25 Score=44.78 Aligned_cols=101 Identities=18% Similarity=0.071 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHH---
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVK--- 533 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~--- 533 (580)
..-..+..+|+.|.+.|++++|++.|.++.+.... -.+.++++-.+.+..+++.....+..++-.+-. .+..
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 44578899999999999999999999998876543 246778888888999999999999999877632 2222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 534 -AYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 534 -a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
.....|..+...++|.+|.+.|-.+..-.
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 23345778888999999999987765443
No 284
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.20 E-value=0.041 Score=61.90 Aligned_cols=109 Identities=10% Similarity=-0.073 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
.+..+-..+.+.|+.++|.+.|++..+..+- +...|..+...|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~ 505 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Confidence 3444555555566666666666655543211 2245666666777777777777766553 2233 4556777777888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 544 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 544 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
..|+++.|+..+++.++++|++...+..+..+.
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 888888888888888888888776666665543
No 285
>PLN03077 Protein ECB2; Provisional
Probab=96.19 E-value=0.072 Score=61.49 Aligned_cols=104 Identities=9% Similarity=-0.028 Sum_probs=48.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~ 547 (580)
+-..+.+.|++++|.++|++..+..+ -+...|..+..++.+.|++++|.+.+++. .+.|+ ...|..+-.++..-++
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence 33445555555555555555442211 12244455555555555555555555442 23332 3334444334444445
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 548 YKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 548 ~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
.+.++...+++++++|++...+..+..+
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 5555555555555555555444444433
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.06 Score=49.62 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----
Q 008025 465 EIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----- 532 (580)
Q Consensus 465 ~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~----- 532 (580)
.-+..+|.+|-.. .++++||.+|+++-+....+ -.++...+...-.+++|.+|+..|++.....-+|.
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 4456677777766 78889999999888764432 23455556666678899999999998877655543
Q ss_pred -HH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 533 -KA-YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 533 -~a-~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
+- ++.-|.|+....+.-.+...+++..+++|...+.
T Consensus 194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 23 3455788888788888999999999999976543
No 287
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.18 E-value=0.094 Score=60.99 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V 532 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~ 532 (580)
......++..++..|++++|...++++++..+.. ..++..+|.++...|++++|...++++++..... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3445568889999999999999999999865442 2456789999999999999999999999874321 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
.++.++|.++...|++++|.+.+++++++.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999873
No 288
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.17 E-value=0.1 Score=59.58 Aligned_cols=113 Identities=12% Similarity=-0.054 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTA 541 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~~ 541 (580)
...|..+..+|.+-.++++|.+.|+..++.-.+....|..++..++.+++-++|...+.+|++.-|. +.+....-+++
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 3456667778888889999999999999887788889999999999999999999999999998887 67777888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
-++.|+-+.++..|+-.+.-+|...+.|..+-.+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 89999999999999999999999888888776554
No 289
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.14 E-value=0.0085 Score=36.34 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
.+++.+|.++..++++++|+.+++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667777777777777777777777776664
No 290
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.13 E-value=0.0065 Score=61.37 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----h----C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----L----N---------GNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-----~----~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
....|.++|.++++.+.|.-++.+|.++++ + . ....+..||.|..|+..|+...|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 456778999999999999999999999996 1 1 124678999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHc
Q 008025 525 INLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 525 l~l~p~~~~a~~~lg~~~~~~ 545 (580)
.+..-.++..|.+++.+....
T Consensus 362 v~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999987643
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.13 E-value=0.0076 Score=58.47 Aligned_cols=90 Identities=20% Similarity=0.071 Sum_probs=80.3
Q ss_pred HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521 (580)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 521 (580)
.......++..+...+..+|..+..+-.++.++++.++...|+..|..+++++|+...-|-.++.+...+|++.+|..++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 33445556666777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCC
Q 008025 522 TKAINLDKKN 531 (580)
Q Consensus 522 ~~al~l~p~~ 531 (580)
..+++++-+.
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 9999998643
No 292
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.045 Score=50.69 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
.....+.+...++++.++|-++++.....+..+|.+..+|+.+|.++...=+.++|..++.++++++|.-..+-
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999999999765543
No 293
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=0.13 Score=52.31 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
..+..|...|....++.+...|.+.+-.++.+.|.+. ..-..-..-.++++++.+.+.|++-|+-.|.+..+|...|..
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 4466777777777788888888888888888777763 222333444567778888888888888888888888877777
Q ss_pred HHHcCCHHHHHHHHHHHHhhC
Q 008025 542 REMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~ 562 (580)
-..+|+.+.|...|+-|++..
T Consensus 481 E~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCc
Confidence 777777777777777766554
No 294
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.05 E-value=0.09 Score=61.14 Aligned_cols=101 Identities=12% Similarity=-0.006 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---- 530 (580)
....+..+|..++..|++++|...+++++++... ....+..+|.+++..|++++|.+.+++++.+...
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 3456778899999999999999999999986321 2334667899999999999999999999886332
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 531 -NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 531 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
...++..++.++...|++++|.+.++++..+..
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 345677789999999999999999999987643
No 295
>PLN03077 Protein ECB2; Provisional
Probab=95.96 E-value=0.066 Score=61.81 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVKAYLR 537 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~ 537 (580)
.+...|..+...|.+.|+.++|++.|++..+. .|+.. .+..+-.++.+.|++++|.++|++..+..+ -+...|..
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 45567888888888888888888888887764 46554 444555667788888888888888774422 14467788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+..+|.+.|++++|.+.+++. .+.|+
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 888888888888888888764 34555
No 296
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.87 E-value=0.013 Score=53.66 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=56.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 507 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
...+.++.+.|.+.|.+++++-|++...|+++|....+.|+++.|.+.|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456789999999999999999999999999999999999999999999999999998753
No 297
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.16 Score=53.09 Aligned_cols=114 Identities=19% Similarity=-0.024 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCHHHHHHH-
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA-EADCTKAINLDKKNVKAYLRR- 538 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~l~p~~~~a~~~l- 538 (580)
++-.-..+ +...+...++...+.-.....+..+|+++.++.+|+.+....+....+ .++.+.+.+..|++......+
T Consensus 65 ~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (620)
T COG3914 65 PELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143 (620)
T ss_pred HHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence 33333344 677777888998999999999999999999999999999887765554 455555999999998876666
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 539 -----GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 539 -----g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+..+..+++..++...++++.++.|+++.+...+-..
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8888999999999999999999999998776665444
No 298
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.17 Score=47.59 Aligned_cols=116 Identities=14% Similarity=0.031 Sum_probs=95.7
Q ss_pred cchhchHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVK 533 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~l~p~~~~ 533 (580)
.+..+|.+-.+|..+-.++... .+..+-++++...++-+|++...|+.+-.+...++++. .=++.+++++..+..|..
T Consensus 69 ~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH 148 (318)
T KOG0530|consen 69 AIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH 148 (318)
T ss_pred HHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh
Confidence 3455677777777666666554 46788888999999999999999999988888888887 778899999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
+|..+-.+....+.|++-+++..+.++.+-.|-.+|+.
T Consensus 149 aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 149 AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 99999999998999999999999999888777777653
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.59 E-value=0.08 Score=41.90 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q 008025 517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLR 576 (580)
Q Consensus 517 A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~ 576 (580)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-..++.+++. ..+...+-.+-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999998765 45555444443
No 300
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.4 Score=44.70 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V 532 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~ 532 (580)
+..+.+.+........+.++..+|+|+..+. |+.+..-...+-=..+..+.++|++.|++++.+-... .
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3444455555555666666666666666652 3322223333333445556666666666666553221 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~ 557 (580)
+.+-..+.+|.+.++|++|-..+.+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 2233344555555555555554443
No 301
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.50 E-value=0.15 Score=42.80 Aligned_cols=80 Identities=8% Similarity=0.030 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDK---QWLKAISFYTEAIK-LNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g---~~~~Ai~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.+..++++..+.+.. +.++.|..++..++ -.|. .-++.|.|+..++++++|++++++++..++.+|+|.++.-..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345567777776544 46788999999996 4444 457889999999999999999999999999999999887665
Q ss_pred HHHHH
Q 008025 539 GTARE 543 (580)
Q Consensus 539 g~~~~ 543 (580)
-.+..
T Consensus 112 ~~ied 116 (149)
T KOG3364|consen 112 ETIED 116 (149)
T ss_pred HHHHH
Confidence 44443
No 302
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.095 Score=49.90 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
....++=..+.+.++++.|....++.+.++|+++.-+..+|.+|.++|.+.-|+++++..++..|+.+.+-.-+..
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3344455667777888888888888888888888888888888888888888888888888888887776655443
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.46 E-value=0.34 Score=49.29 Aligned_cols=118 Identities=18% Similarity=0.110 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C------
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLD-K------ 529 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p------ 529 (580)
......+...+....+.|+++.|...+.++...++. .+...+..+......|+..+|++.+++.++.. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 355677888888888999999998888888876421 46777888888888888888888888877710 0
Q ss_pred ---------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 530 ---------------------------KNVKAYLRRGTAREML------GYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 530 ---------------------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
...++++.+|.....+ ++++++.+.|+++++++|+...++..++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 0134667777777777 7888889999999999998888888777765
Q ss_pred hh
Q 008025 577 KV 578 (580)
Q Consensus 577 ~~ 578 (580)
..
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 43
No 304
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.38 E-value=0.07 Score=57.57 Aligned_cols=117 Identities=29% Similarity=0.406 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLES--GSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
..+......++.+++.++|..+.-.|..++.+-|.+ .....+.+.||+.+ ++|..++..++-+++..|...+++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 345566779999999999999999999999988843 45677888888755 689999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+.++.+|...++++-|.+.+.-....+|++.++...+.+++..
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999998887766666544
No 305
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.17 E-value=0.4 Score=55.09 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
+....|..++..++++.+-++|...+.+|++--|. +.+....-+..-++.|+.+.+...|+..+.-+|.....|.-+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 46678999999999999999999999999999888 7888899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
..-.+.++.+..+..|++++.+.=.-..+...+.
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 9999999999999999999988655444444433
No 306
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.02 E-value=0.051 Score=52.04 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN-RAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
+.+...|...+..-.+.|-|.+--..|.+++.++|.+.+.|.. -+.-+...++++.+...+.++++++|+++..|
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 3444455555555555555555555555555555555554433 22223344455555555555555555555444
No 307
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.92 E-value=0.48 Score=40.78 Aligned_cols=86 Identities=9% Similarity=-0.114 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
...+.+.........+.+++...+...--+.|+.+..-..-|++++..|+|.+|+..+++..+-.+..+.+.-.++.|++
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34555566666668999999999998888999999999999999999999999999999999988888888888999999
Q ss_pred HcCCHH
Q 008025 544 MLGYYK 549 (580)
Q Consensus 544 ~~g~~~ 549 (580)
-+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 999854
No 308
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.89 E-value=0.95 Score=45.80 Aligned_cols=104 Identities=15% Similarity=0.004 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHcCCCCHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLE---SGSFLQAEADCTK-AINLDKKNVKA 534 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~l~p~~~~a 534 (580)
..+...++=..|...++|+.-++..+..-.+ -++.....+.+|.++.+ .|+.++|++.+.. ..+..+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4456667777888899999999998887666 45567788889999988 8999999999999 55566788899
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCH
Q 008025 535 YLRRGTAREML---------GYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 535 ~~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~ 566 (580)
+..+|.+|..+ ...++|+.+|+++.+++|+..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 99999987543 347899999999999997643
No 309
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.85 E-value=0.79 Score=45.29 Aligned_cols=110 Identities=24% Similarity=0.106 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCC
Q 008025 462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDK 529 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l~p 529 (580)
..+...+.+|..+.. ..|+.+|...|.++.+..... ....+.++.+|..-. +...|+..|.++-...
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 345677778888887 569999999999999885544 355888998887641 3347999999988876
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 530 KNVKAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+..+.+++|.+|.. ..++++|..+|+++-+... ..+...++.+
T Consensus 186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~ 232 (292)
T COG0790 186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLM 232 (292)
T ss_pred -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 78899999988865 3489999999999999876 6666666633
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.85 E-value=0.062 Score=35.25 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
.+++++|.+|..+|++++|++++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556666666666666666666666554
No 311
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.48 Score=44.62 Aligned_cols=125 Identities=11% Similarity=0.017 Sum_probs=105.9
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (580)
..-+.++|++-+.|..+-.+.-..|++. .-++...+.+..+.++.-+|..+-++...-+.|+.=+.+..+.|+.|-.|-
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 4456678899999998888888888888 889999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 533 KAYLRRGTAREML------GYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 533 ~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.+|..+=.+.... -..+.-+.+..+.+++.|+|..+|..|..+.+.
T Consensus 182 SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 182 SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 8888764443332 235667788899999999999999999988764
No 312
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.25 Score=47.07 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
....++=..|...++++.|..+.++.+.++|.++.-+--.|.+|.++|.+.-|++.++..++..|+++.+.....++.+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3445566677888999999999999999999999999999999999999999999999999999999988877766654
No 313
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.45 Score=47.80 Aligned_cols=99 Identities=18% Similarity=0.116 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----HHHHH
Q 008025 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY----YKEAI 552 (580)
Q Consensus 479 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~----~~~A~ 552 (580)
..++-+.+...+++.+|+...+|+.+.+++.+... +..=++.++++++.||.|..+|..+-.+..+... ..+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 66788889999999999999999999999987764 6788999999999999999998777666655443 57778
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 553 EDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 553 ~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++..+++.-++.|-.+|.+...+.+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 8899999999999999988777655
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.42 E-value=0.091 Score=34.41 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
..++.++|.+|..+|++++|++++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578999999999999999999999999764
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.29 E-value=0.76 Score=40.32 Aligned_cols=81 Identities=15% Similarity=-0.072 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
..+..+..+-.+.++.+++...+...-.+.|+.+..-..-|..+...|++.+|+..|+...+-.|..+.+...+..+.+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45677777888889999999999999999999999999999999999999999999999999999999998888887654
Q ss_pred h
Q 008025 579 F 579 (580)
Q Consensus 579 ~ 579 (580)
+
T Consensus 91 ~ 91 (160)
T PF09613_consen 91 L 91 (160)
T ss_pred c
Confidence 3
No 316
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.15 E-value=0.97 Score=45.37 Aligned_cols=108 Identities=7% Similarity=-0.106 Sum_probs=82.3
Q ss_pred ccchhchHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 455 TNTFNQKQSAEIAKEKGNQAYKDKQ------------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522 (580)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 522 (580)
.....+|.+.+.|..+....-..-. .+.-+..|++|++.+|++...+..+-.+..+.-+.++..+-++
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445567777777776655543322 4567888999999999999999998889999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC
Q 008025 523 KAINLDKKNVKAYLRRGTARE---MLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 523 ~al~l~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l~ 562 (580)
+++..+|++...|..+-.... ..-.+++....|.++++.-
T Consensus 90 ~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 90 ELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 999999999988765533322 2346788888888887653
No 317
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.14 E-value=1 Score=45.29 Aligned_cols=92 Identities=8% Similarity=-0.067 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025 484 ISFYTEAIKLNGNNATYYSNRAAAYLESGS------------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551 (580)
Q Consensus 484 i~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A 551 (580)
...|++.++.+|++.+.|..+....-.+-. .+.-+..|++||+.+|++...+..+=.+..+..+-++-
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 456889999999999999999877765543 45678899999999999999888887888888899999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 552 IEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 552 ~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
.+-+++++..+|++...|..+-..
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHH
Confidence 999999999999999988766543
No 318
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.95 E-value=0.27 Score=39.32 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=35.3
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 473 QAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 473 ~~~~~g~~~~Ai~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
...+.++|.+|++.+.+..+..... ..+..+++.++...|++++|++.+++++++-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456777777777777766653221 2445666666667777777777777766663
No 319
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.92 E-value=1.5 Score=43.74 Aligned_cols=104 Identities=16% Similarity=0.037 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGNN---ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~~---~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
|.-..++...=......|||+.|++..+...+. .++- ..+-..-+.+-.. .-+...|..+..+++++.|+...
T Consensus 185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvP 264 (531)
T COG3898 185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVP 264 (531)
T ss_pred cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccch
Confidence 344445555556677899999999998877653 2221 1222222222222 23688899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+-..-+.+|++.|+..++-..++.+.+.+|.
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 9999999999999999999999999999875
No 320
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.90 E-value=5 Score=39.37 Aligned_cols=115 Identities=12% Similarity=0.036 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CCC----------CHHHHHHHHHHHHHcCCHH---HHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKL----NGN----------NATYYSNRAAAYLESGSFL---QAEADCT 522 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~----~p~----------~~~~~~~la~~~~~~~~~~---~A~~~~~ 522 (580)
..-++.+|+.|...++++ +|++|+..++++.+. ... ....+..++.+|++.+.++ +|.+..+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 466789999999999999 999999999999987 221 1457889999999988765 4555555
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Q 008025 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP-TNKRASLSADRL 575 (580)
Q Consensus 523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~l~~l 575 (580)
.+-...|+.+..++..=.++.+.++.+++.+.+.+.+.--+ .+......+..+
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 55556787777774444444457889999999998887654 334444444444
No 321
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.79 E-value=0.31 Score=55.38 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=83.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
...-++++..+.|++|+..|++.-.--|.. .++.+..|.+.+++- .+.+|+.-|++. .-.|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence 345678889999999999999998887764 578888898887552 366777777663 335666777899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
.|.+|.++|+|+|-+++|.-|++..|+.|..-....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 999999999999999999999999999876544433
No 322
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.78 E-value=0.25 Score=51.43 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
...++++..++-+-..+|-..+.+++.+....+-.++.+|..|+.+.+.+.|++.++.|++++|+++..-..+-.+
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 3567899999999899999999999999988899999999999999999999999999999999998866555433
No 323
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.70 E-value=1.1 Score=45.38 Aligned_cols=102 Identities=22% Similarity=0.075 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC-C--------------------------------CHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NG-N--------------------------------NATYYSNRAAAY 508 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p-~--------------------------------~~~~~~~la~~~ 508 (580)
.+...+..+..+...|+..+|+..++..+.. .. . ...++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999888871 10 0 134566667666
Q ss_pred HHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 008025 509 LES------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY-----------------KEAIEDFSYALVLEPT 564 (580)
Q Consensus 509 ~~~------~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~-----------------~~A~~~~~~al~l~p~ 564 (580)
..+ ++++++++.|.++++++|++.++|+.+|..+.+.-+. ..|+.+|-+++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 677 7889999999999999999999999999887655322 4488899999999887
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.39 E-value=1 Score=49.14 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH----------HhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAI----------KLNGN----------NATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al----------~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
-..|++.+..+...+|.+.|+++|+|+- .-+|. +...|..-|......|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4578999999999999999999999853 22332 456777788888889999999998887
Q ss_pred HHHc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 524 AINL---------------------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 524 al~l---------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
|-.. ...+-.+-|.+|.-|...|++.+|+..|-+|..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6543 234666889999999999999999998877653
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.29 E-value=0.84 Score=41.21 Aligned_cols=69 Identities=19% Similarity=0.070 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (580)
..-+-..++.+.+++|++++|+..++....-+ -.+.....+|.++..+|+-++|...|+++++.+++..
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 34455679999999999999999987653321 1234567899999999999999999999999985443
No 326
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.20 E-value=1.3 Score=48.20 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHc----c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 466 IAKEKGNQAYKD----K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 466 ~~~~~g~~~~~~----g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
+.+.+|.+|.+. . ++..|+.+|.++-++. ++.+.+.+|.+|..-. ++..|.++|.+|.+. .+..+.++
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 566788888874 3 7899999999998875 4568888999998766 678999999998874 57889999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 538 RGTAREML----GYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 538 lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
++.+|..= .+.+.|..+++++-+.+ ++.+...++.+
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence 99998643 37899999999999988 44444444443
No 327
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=1.6 Score=42.09 Aligned_cols=77 Identities=8% Similarity=-0.064 Sum_probs=55.8
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHH----------------------------------HHHHhCCCCHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT----------------------------------EAIKLNGNNAT 499 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~----------------------------------~al~~~p~~~~ 499 (580)
...+...+++..+...++.++...|+.+.|...+. +.+..+|++..
T Consensus 158 ~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~ 237 (304)
T COG3118 158 KQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVE 237 (304)
T ss_pred HHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHH
Confidence 33344445556666667777777777755555433 22345899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
+-+.++..|...|++++|.+++-..++.+-+
T Consensus 238 aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 238 AALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999888887654
No 328
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.12 E-value=1.3 Score=46.95 Aligned_cols=102 Identities=20% Similarity=0.069 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHH---HHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVK---AYLR 537 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~---a~~~ 537 (580)
....|...+...-..|-++.....|++.+++.--.+..-.|.|..+.+..-|+++.+.|++.+.+.+ +-.+ .|..
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 3456777788888888999999999999999888888889999988888889999999999999864 3333 3444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
.....+.--+.+.|...|++|++..|.
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 455555556889999999999999884
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.12 E-value=0.96 Score=34.29 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY---SNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
.+....+.|..++++.+.++|+....++++..++..+.+ -.+..+|...|+|++.+++..+=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888999999999999998877765444 44556677888888887776554443
No 330
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.10 E-value=2.6 Score=39.39 Aligned_cols=78 Identities=17% Similarity=0.057 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 462 QSAEIAKEKGNQAYKDKQW-------LKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~-------~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
..+..+..+|..+...++. .+|++.|.++++.... .....+.+|.++.++|++++|.++|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5667777788888877775 4555556665554322 35788999999999999999999999999875
Q ss_pred CCCH-HHHHHHH
Q 008025 529 KKNV-KAYLRRG 539 (580)
Q Consensus 529 p~~~-~a~~~lg 539 (580)
..+. ..+..++
T Consensus 196 ~~s~~~~l~~~A 207 (214)
T PF09986_consen 196 KASKEPKLKDMA 207 (214)
T ss_pred CCCCcHHHHHHH
Confidence 4433 2444444
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.06 E-value=0.77 Score=46.77 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCC---HHHHHHHHHH
Q 008025 491 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--------------------------KKN---VKAYLRRGTA 541 (580)
Q Consensus 491 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--------------------------p~~---~~a~~~lg~~ 541 (580)
++.+|.+.+.+..++.++..+|+++.|.+.+++||=.. +.| ..+.++....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45567777777777777777777777777776664330 111 2255556666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHH
Q 008025 542 REMLGYYKEAIEDFSYALVLEPT-NKR 567 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~-~~~ 567 (580)
+.+.|.+.-|.++++-.+.++|. |+.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 77777777777777777777776 553
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.95 E-value=1.2 Score=48.40 Aligned_cols=112 Identities=20% Similarity=0.071 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYK-----DKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESG-----SFLQAEADCTKAIN 526 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~-----~g~~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~ 526 (580)
.+....+.+|.+++. .+|.++|+.+|..+.+. .-.++.+.+.+|.+|.+.. +++.|+.+|.++-+
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 344556666766654 47899999999999771 1125668899999998853 78889999999988
Q ss_pred cCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 527 LDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 527 l~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+. ++.+.+.+|.++..-. ++..|.++|..|.+. .+..+...++.+..
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 65 5678899999998665 678999999988865 46677777776654
No 333
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.83 E-value=0.77 Score=46.69 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
.......|..++.+|+|.++.-+-....+..| ++.++..+|.|.+...+|++|.+++.+
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44455677888889999999988888888888 788888999999999999998888855
No 334
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.82 E-value=0.52 Score=37.67 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=46.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 507 AYLESGSFLQAEADCTKAINLDKK---------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 507 ~~~~~~~~~~A~~~~~~al~l~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
-..+.++|.+|++.+.+.+..... ...+..++|.++...|++++|.+.+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345789999999988888776321 245788899999999999999999999998854
No 335
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=1.3 Score=45.46 Aligned_cols=95 Identities=20% Similarity=0.042 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCH
Q 008025 462 QSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLN---GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNV 532 (580)
Q Consensus 462 ~~~~~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~---p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~ 532 (580)
-++....++|..++ ..++++.|..+++++..+. |+. ..+...|+.+|.+.. .+..+...+++++++..+++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 34455566666554 3466777777777776653 222 345566777777666 56677777777777765544
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 533 ----KAYLRRGTAREMLGYYKEAIEDFS 556 (580)
Q Consensus 533 ----~a~~~lg~~~~~~g~~~~A~~~~~ 556 (580)
+..+.++..+.-..++.-|.+.+.
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 344556666766777777766643
No 336
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=2.5 Score=43.47 Aligned_cols=98 Identities=19% Similarity=0.075 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-N--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------- 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------- 531 (580)
..+..++.+|.....-+.|++|...|..++++-.. + +.+..|+|..|+..++-+.-.+.++. +.|.|
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq 441 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQ 441 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHH
Confidence 45678888999999999999999999999987544 2 45667899999998876543333332 34442
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
..++|..|.-.+.++++.||+..+++.+++.
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4478888999999999999999999999986
No 337
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.09 E-value=0.25 Score=31.84 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
++..||.+.+..++|++|+++|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 338
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=5.2 Score=40.33 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC--CC
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NG---NNATYYSNRAAAYLESGSFLQAEADCTKAIN--LDK--KN 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~p--~~ 531 (580)
-.+..|+.+...+-..++...-...+...+.. .. ..+...+.|-.+|+..+.|++|.+...+..- ... .+
T Consensus 167 i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ 246 (493)
T KOG2581|consen 167 IAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEW 246 (493)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHH
Confidence 34667778888888888877666666655543 21 1245667788889999999999888877652 222 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+...|.+|.+..-+.+|..|.++|-+|+...|+ ..+.-..+++.+.
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~k~ 292 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVNKL 292 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHHHH
Confidence 455677899999999999999999999999998 4455555555443
No 339
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.59 E-value=0.63 Score=45.53 Aligned_cols=62 Identities=21% Similarity=0.116 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 483 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
|+.+|.+|+.+.|++...|+.+|.++...++.-+|+-+|-|++-...-++.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998766678899999888887
No 340
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.56 E-value=0.64 Score=29.55 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 008025 534 AYLRRGTAREMLGYYKEAIED--FSYALVLEPT 564 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~--~~~al~l~p~ 564 (580)
.++.+|..+...|++++|++. |+-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 445555555555555555555 3345444443
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.49 E-value=1.1 Score=43.36 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
....++.+++..+...++++.+++.+++.+..+|.+-..|..+-..|++.|+...|+..|++.-++
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 445678889999999999999999999999999999999999999999999999999999987774
No 342
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.47 E-value=3 Score=42.59 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=46.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 558 (580)
Q Consensus 507 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 558 (580)
.++..|+|.++.-+..-..++.| ++.+|-.+|.+++...+|++|-.++++.
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34688999999999999999999 9999999999999999999999998654
No 343
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.33 E-value=6.7 Score=34.84 Aligned_cols=109 Identities=11% Similarity=-0.021 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N--ATYYSNRAAAYLESGSFLQAEADCTKA-INLDKKNVKAYLR 537 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~--~~~~~~la~~~~~~~~~~~A~~~~~~a-l~l~p~~~~a~~~ 537 (580)
..-+.+..+.+..++|+-+.|+..|..+-.-.|- - -.+...-+.+++..|.|++-....+.. -..+|-...+.-.
T Consensus 93 pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEA 172 (221)
T COG4649 93 PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREA 172 (221)
T ss_pred hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHH
Confidence 3456677899999999999999999987654332 1 234556677778889999866655442 2224444667788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
||.+-++.|++.+|.+.|++... +.+.+....+.
T Consensus 173 LglAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 99999999999999999998877 44444433333
No 344
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.30 E-value=0.34 Score=31.22 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
..|..+|.+-...++|++|++.|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999874
No 345
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.23 E-value=2.1 Score=45.60 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------------------NATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
+-+.+|.+.|...++..+++.|++..+++...-.. +...|..++...-..|-++.....|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 55789999999999999999999999998865211 245677778888888999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHH
Q 008025 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP--TNKRASL 570 (580)
Q Consensus 524 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~ 570 (580)
.|.+.---++.-.|.|..+.+..-+++|.+.|++.+.+.+ .-.+.|+
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 9999999999999999999999999999999999999964 4455555
No 346
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.21 E-value=0.69 Score=45.27 Aligned_cols=62 Identities=21% Similarity=0.116 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 517 A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
|+.+|.+|+.+.|++...|+.+|.++...++.=+|+-+|-+++...--.+.+..+|..+-+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997766668888888876554
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.16 E-value=2.9 Score=36.13 Aligned_cols=81 Identities=14% Similarity=-0.107 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
..+......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|...|+...+-.+..+.+...+..+.+.
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34555566666789999999999998889999999999999999999999999999999999988888888888777654
Q ss_pred h
Q 008025 579 F 579 (580)
Q Consensus 579 ~ 579 (580)
+
T Consensus 91 l 91 (153)
T TIGR02561 91 K 91 (153)
T ss_pred c
Confidence 3
No 348
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.04 E-value=2.3 Score=45.64 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=69.1
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
.++....+++.+.|..+.....|++|.++|.+.- ..-++..||+.+++|++ ++...+.-|++.+.+-.
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~ 857 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGE----LEVLARTLPEDSELLPV 857 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHH
Confidence 3345567789999999999999999999998862 34467788888888887 44444455778888888
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~ 557 (580)
+|..+...|.-++|.++|-+
T Consensus 858 ~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 858 MADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhhchHHHHHHHHHh
Confidence 89999899988888888754
No 349
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.63 E-value=3.7 Score=41.13 Aligned_cols=97 Identities=11% Similarity=-0.032 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
.+-++...++..+-.|+|+.|.+.|+-.+. +|+.- --+..|-.-...+|+.+.|+++.+++-+.-|.-+-++...=..
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 345566678888888999999999886653 34321 1112222223467888999999999999998888777777777
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 008025 542 REMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~ 560 (580)
....|+++.|++..+...+
T Consensus 198 r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHhcCChHHHHHHHHHHHH
Confidence 7888999999888876554
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.56 E-value=3.1 Score=38.00 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=58.0
Q ss_pred HHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHH
Q 008025 475 YKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYLRRGTAREMLGYYK 549 (580)
Q Consensus 475 ~~~g~~~~Ai~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~g~~~ 549 (580)
..+-.-++|...|-++-.. .=++++..+.||..|. ..|.+++++.+.+++++... |++.+..|+.++.++++++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3343445677776654432 1246888888887765 77899999999999998543 5889999999999999999
Q ss_pred HHH
Q 008025 550 EAI 552 (580)
Q Consensus 550 ~A~ 552 (580)
+|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 884
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.47 E-value=1.6 Score=45.12 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
+...|........+.+.|.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++|+.+|+++..|.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 556777777777777779999999999999999999999988888888776 89999999999999999988664
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.28 E-value=0.38 Score=27.99 Aligned_cols=23 Identities=26% Similarity=0.001 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFS 556 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~ 556 (580)
+++++|.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555554443
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.23 E-value=1 Score=28.67 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=9.4
Q ss_pred HHHHHHHHHHccCHHHHHHH
Q 008025 467 AKEKGNQAYKDKQWLKAISF 486 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~ 486 (580)
++.+|..+..+|+|++|++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444455555555555555
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.80 E-value=0.43 Score=27.73 Aligned_cols=24 Identities=25% Similarity=0.007 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCT 522 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~ 522 (580)
.+++++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355667777777777777766654
No 355
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.78 E-value=2.1 Score=34.97 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=57.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 008025 504 RAAAYLESGSFLQAEADCTKAINLDKKNV---KAYLRRGTAREMLGY-----------YKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 504 la~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~ 569 (580)
++.-++..|++-+|++..+..+..++++. ..+...|.+++++.. +-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56778899999999999999999988776 445556887765542 4678999999999999988777
Q ss_pred HHHHHH
Q 008025 570 LSADRL 575 (580)
Q Consensus 570 ~~l~~l 575 (580)
..++.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 777653
No 356
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.74 E-value=0.57 Score=45.17 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=57.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025 487 YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR-RGTAREMLGYYKEAIEDFSYALVLEPTN 565 (580)
Q Consensus 487 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~ 565 (580)
|.++-..-++++..|...+..-.+.+.|.+--..|.++++.+|.|.+.|.. .+.=+...++++.+...|++++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444556666666666666666666777777777777777777776655 4445566667777777777777777777
Q ss_pred HHHHHHHHHH
Q 008025 566 KRASLSADRL 575 (580)
Q Consensus 566 ~~~~~~l~~l 575 (580)
+..|...-++
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 7666655444
No 357
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=7 Score=39.61 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=86.0
Q ss_pred HHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHcCCCCHH
Q 008025 467 AKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLES------------GSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~-~Ai~~~~~al~~~p~~~~~~~~la~~~~~~------------~~~~~A~~~~~~al~l~p~~~~ 533 (580)
.+..-....+.|.|+ ++++.=.+.+..+|+...+|+.+=.++... ...++-+.....+++.+|+..-
T Consensus 31 ~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~ 110 (421)
T KOG0529|consen 31 LFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG 110 (421)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH
Confidence 344444455566664 577778888889999888887666555322 2355667888899999999999
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 534 AYLRRGTAREMLG--YYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 534 a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|+.+..++.+.. ++..-++.++++++.+|.|-.+|.+...+...
T Consensus 111 aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~ 157 (421)
T KOG0529|consen 111 AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ 157 (421)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence 9999999999877 46888999999999999999888877665443
No 358
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.56 E-value=6.6 Score=38.49 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=71.4
Q ss_pred HHHccCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc----CC---C-------
Q 008025 474 AYKDKQWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINL----DK---K------- 530 (580)
Q Consensus 474 ~~~~g~~~~Ai~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~l----~p---~------- 530 (580)
..++||++.|..+|.|+-.+. |+. +..+|+.|...++.+ ++++|..++++++++ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999987765 222 467888898899999 999999999999988 21 1
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHH
Q 008025 531 NVKAYLRRGTAREMLGYYK---EAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~l~p~~~~~~ 569 (580)
....+..++.+|...+.++ +|...++.+-.-.|+.+..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 1346777888898887654 45555556666677766666
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.25 E-value=3.8 Score=39.74 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
...++..++..+...++++.+++.+++.+.++|-+-.+|..+=.+|+..|+...|+..|++.-++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999998874
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.18 E-value=0.77 Score=46.87 Aligned_cols=100 Identities=9% Similarity=0.102 Sum_probs=60.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~ 547 (580)
...+.++...|+|+++...+..+-..-..-..+...+-....+++++++|....+-.+.-.-..++..---+.....++-
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhH
Confidence 34555666666666666665554443333333444444555566666666666666655555555554444555566777
Q ss_pred HHHHHHHHHHHHhhCCCCHH
Q 008025 548 YKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 548 ~~~A~~~~~~al~l~p~~~~ 567 (580)
++++.-++++.+.++|....
T Consensus 407 ~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 407 FDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHHHhccCChhcc
Confidence 88888888888888876443
No 361
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=4.6 Score=42.69 Aligned_cols=94 Identities=19% Similarity=0.023 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 479 QWLKAISFYTEAIKLNGNNATYYSN--RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 556 (580)
Q Consensus 479 ~~~~Ai~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 556 (580)
.-.-++..+...+.+++.+++.+.. +...+...++...+......++..+|++..++.+++.++...|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344777777777888888876443 47777788899899999999999999999999999999988887666666655
Q ss_pred H-HHhhCCCCHHHHHHH
Q 008025 557 Y-ALVLEPTNKRASLSA 572 (580)
Q Consensus 557 ~-al~l~p~~~~~~~~l 572 (580)
+ +.+..|++......+
T Consensus 126 ~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 126 EIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHhcCcchHHHHhhH
Confidence 5 999999999888887
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.92 E-value=1.9 Score=28.84 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al 559 (580)
+.++.+|..+|+++.|.+.+++.+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.55 E-value=4.2 Score=30.90 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhh
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR---GTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l---g~~~~~~g~~~~A~~~~~~al~l 561 (580)
-....|.=++...+.++|+..++++++..++...-+..+ ..+|...|+|++.+++..+=+++
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788999999999999999988877655555 56688999999998886655443
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.39 E-value=16 Score=35.87 Aligned_cols=84 Identities=23% Similarity=0.085 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---------
Q 008025 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG--------- 546 (580)
Q Consensus 480 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g--------- 546 (580)
..+|+..|.++-... +..+.+++|.+|.. ..++++|..+|.++-+... ..+.++++ +++..|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 347999999988776 78899999988865 3489999999999999886 88999999 776666
Q ss_pred ------CHHHHHHHHHHHHhhCCCCHHH
Q 008025 547 ------YYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 547 ------~~~~A~~~~~~al~l~p~~~~~ 568 (580)
+...|..++.++..+.+.....
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 8889999999998887655443
No 365
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.37 E-value=12 Score=33.84 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
..++..+|..|.+.|++++|++.|.++.+..-.. ...++++-.+....+++.....++.++-.+-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999988765332 45677778888899999999999999987743
No 366
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.91 E-value=1.2 Score=46.03 Aligned_cols=79 Identities=14% Similarity=-0.036 Sum_probs=65.2
Q ss_pred ccccchhchHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008025 453 LSTNTFNQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (580)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p 529 (580)
+.......+.....+.+++.++++. |+--.|+....++++++|....+|+.|+.++.+++++.+|+++...+....|
T Consensus 397 ~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 397 YSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 3344445566677777888888764 5667788899999999999999999999999999999999999988888888
Q ss_pred CC
Q 008025 530 KN 531 (580)
Q Consensus 530 ~~ 531 (580)
.+
T Consensus 477 td 478 (758)
T KOG1310|consen 477 TD 478 (758)
T ss_pred hh
Confidence 44
No 367
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=87.53 E-value=6.2 Score=32.62 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-------LNGNNAT----YYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-------~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
++..+-.++..+...|+|++++..-.++|. ++.+... +-++++.++-.+|+.++|++.|+.+-+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455666788899999999988877666664 5555443 4578999999999999999999988764
No 368
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.52 E-value=5.2 Score=42.63 Aligned_cols=73 Identities=12% Similarity=-0.013 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
..+.+-|.-+++..+|..++++|...++--|. .++..-+++.||..+.+.+.|.++++.|-+.+|.++-....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 45567788889999999999999999988664 36788889999999999999999999999999988755443
No 369
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.18 E-value=7.9 Score=39.46 Aligned_cols=107 Identities=11% Similarity=-0.075 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C----CH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NAT-YYSNRAAAYLESGSFLQAEADCTKAINLDK-K----NV 532 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p-~----~~ 532 (580)
|..--.+++.....+.++|-+..|++..+-.+.++|. |+- +.+.+=...++.++|+--++.++....... + -+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 3344556677788888999999999999999999999 654 344444445677888877777777655211 1 23
Q ss_pred HHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCCH
Q 008025 533 KAYLRRGTAREMLGYY---------------KEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~---------------~~A~~~~~~al~l~p~~~ 566 (580)
..-|..+.+++.+++- ++|.+.+++|+...|.-.
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5668889999999988 999999999999987643
No 370
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.18 E-value=22 Score=31.96 Aligned_cols=110 Identities=18% Similarity=0.025 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCC
Q 008025 462 QSAEIAKEKGNQAYK-----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-------SFLQAEADCTKAINLDK 529 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~-----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l~p 529 (580)
..+...+..|+..+. .++...|++.|..+-. -+.+.+..++|.++..-. +..+|++++.++..++
T Consensus 66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~- 142 (248)
T KOG4014|consen 66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE- 142 (248)
T ss_pred CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC-
Confidence 344566777877763 5678999999998876 466788888888875332 3778999999998875
Q ss_pred CCHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 530 KNVKAYLRRGTAREML------------------------GYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~------------------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+..+-++|...|..- .+.+.|.++--++-+++ ++.+-.++.++.+
T Consensus 143 -~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 143 -DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYK 211 (248)
T ss_pred -CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH
Confidence 344555555444333 56778888877777764 4555555555543
No 371
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.89 E-value=15 Score=37.27 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C----CCH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD----K----KNV 532 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~----p----~~~ 532 (580)
-.++..+|..|...|+++.|++.|.++-....+. ...+.++-.+-..+++|..-..+-.++.+.- . -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4577889999999999999999999966554332 4566777777788999988887777776651 0 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al 559 (580)
+.....|.+...+++|..|.++|-.+.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466777888888999999999986654
No 372
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=86.52 E-value=4.9 Score=44.17 Aligned_cols=62 Identities=21% Similarity=0.114 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 498 ATYYSNRAAAYLESGSFLQAEADCTKA----------INLDK----------KNVKAYLRRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 498 ~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~l~p----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 557 (580)
...|++.+.-+...+|.+.|+++|+|+ |+-+| .+...|...|.-+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 356888888888999999999999874 22244 2445677788889999999999998876
Q ss_pred HH
Q 008025 558 AL 559 (580)
Q Consensus 558 al 559 (580)
|-
T Consensus 938 A~ 939 (1416)
T KOG3617|consen 938 AK 939 (1416)
T ss_pred hh
Confidence 64
No 373
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.45 E-value=14 Score=41.31 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-- 531 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-- 531 (580)
.+......+.....+.+|++|.....++...-+. .....-..|.+....+++++|++..+.+++.=|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3445566788888999999999999988776544 24556677888889999999999999999987654
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
..++...|.+..-.|++++|..+.+++.++.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999883
No 374
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.21 E-value=12 Score=36.83 Aligned_cols=55 Identities=11% Similarity=-0.114 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 503 NRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 503 ~la~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~ 557 (580)
.|+.|..++|+..+|++.++...+-.|-. ...+-|+-.++.++.-|.+....+-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544444411 12333444444444444444333333
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.13 E-value=15 Score=38.02 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=76.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 549 (580)
--......|+...|-.....+++..|.++......+.+..++|+|+.+.+.+.-+-++-..-.++..-+-..+..+++++
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 34455678999999999999999999999999999999999999999999887665543333344444556677899999
Q ss_pred HHHHHHHHHHhhCCCCHH
Q 008025 550 EAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 550 ~A~~~~~~al~l~p~~~~ 567 (580)
+|....+..+.-+-++++
T Consensus 375 ~a~s~a~~~l~~eie~~e 392 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEE 392 (831)
T ss_pred HHHHHHHHHhccccCChh
Confidence 998888777765544444
No 376
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.85 E-value=2.8 Score=38.27 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEA 519 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~ 519 (580)
+.++..+.+|..|. +.|.++++..|.+++++... +++.+..|+.+|++++++++|.-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 45667777887765 78999999999999999654 58999999999999999999853
No 377
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.79 E-value=2.3 Score=49.05 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=88.0
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 527 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-- 527 (580)
..+++.+..+..++..+.+.+++++|+..-.++.-+ .|+....+.+++...+..++...|+..+.++.++
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence 346777888999999999999999999998777643 3456778899999999999999999999998887
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 528 ------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 528 ------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
.|.-.....+++.++...++++.|+.+++.|++..
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35555667888999999999999999999999854
No 378
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.72 E-value=62 Score=35.75 Aligned_cols=113 Identities=16% Similarity=0.041 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008025 462 QSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (580)
Q Consensus 462 ~~~~~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---- 530 (580)
.++...+.+|.+++ ...+++.|..+++|++.+...+ ..+.+.++.+|.+.+... |.+.+++.|+...+
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 56888999999999 5688999999999998886432 234567788888888777 99999999998655
Q ss_pred CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Q 008025 531 NVKAYLRR--GTAREMLGYYKEAIEDFSYALVLE--PTNKRASLSADRL 575 (580)
Q Consensus 531 ~~~a~~~l--g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l~~l 575 (580)
...-.+++ ...+...+++..|.+.++....+. ..++.+...+.-+
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 22222222 222223379999999999999886 4666665554443
No 379
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.35 E-value=6.4 Score=38.69 Aligned_cols=100 Identities=16% Similarity=0.107 Sum_probs=76.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDF 555 (580)
Q Consensus 478 g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 555 (580)
-+|..-...|+-.....|+ +.+-.|++.+.-+..-.+.++...+..... =.++...+-.+|..+.++|+.+||.+.|
T Consensus 310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred CChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence 4566666666665555554 566678888887777788888777766554 2356667788899999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhh
Q 008025 556 SYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 556 ~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++++.+.++..+......++..+
T Consensus 389 drAi~La~~~aer~~l~~r~~~l 411 (415)
T COG4941 389 DRAIALARNAAERAFLRQRLDRL 411 (415)
T ss_pred HHHHHhcCChHHHHHHHHHHHHh
Confidence 99999999988888777766543
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.97 E-value=1.8 Score=44.30 Aligned_cols=56 Identities=29% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 503 NRAAAYLESGSFLQAEADCTKAINLD---------KKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 503 ~la~~~~~~~~~~~A~~~~~~al~l~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 559 (580)
.|..++.-+|||..|++.++. ++++ +.+...+|..|.+|..+++|.+|+..|.+.+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666555543 2221 1233455556666666666666666665554
No 381
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.91 E-value=0.66 Score=45.68 Aligned_cols=79 Identities=16% Similarity=0.012 Sum_probs=65.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
..+.+...++.+.+..|+..-..+++.+++...+++.++..|+.+.++++|++++..+....|++......+...-...
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 3447788888999999999988888888888999999999999999999999999999999998877655554444333
No 382
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.79 E-value=9.4 Score=42.15 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 493 (580)
.....+...|..++++|+|++|...|-+.+..
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 45677888999999999999999999998853
No 383
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=83.47 E-value=9.7 Score=39.96 Aligned_cols=74 Identities=9% Similarity=-0.013 Sum_probs=66.1
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
.+.++++|.+...|+.+-..+-.+ -+++..+.|++.+..-|..+.+|.......+..++|+..++.|.++|.--
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 345667899999999998888766 99999999999999999999999999999999999999999999988743
No 384
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.34 E-value=3.9 Score=35.29 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~ 513 (580)
+.....+...+..|+|.-|....+.++..+|++..+...++.++.+++.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3456677788888899999999999888899888888888888876654
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.68 E-value=2.4 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
.++||.+|+++|+++.|.+.++++++-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 368999999999999999999999953
No 386
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.39 E-value=13 Score=34.38 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=65.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHH---
Q 008025 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AYLRRGTAREM--- 544 (580)
Q Consensus 471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~lg~~~~~--- 544 (580)
...+++.++.++||...+.-++-+|.+......+-..|.-.|+|++|...++-+-++.|++.. .|.++-.+-..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e 87 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE 87 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888888888888888888888888888888887643 33333222111
Q ss_pred ----------c-CCHHHHHHHHHHHHhhCCC
Q 008025 545 ----------L-GYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 545 ----------~-g~~~~A~~~~~~al~l~p~ 564 (580)
+ |...+=+..+.+++.++.+
T Consensus 88 vfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 88 VFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 1 2455556666777777665
No 387
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.27 E-value=17 Score=39.20 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=47.6
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553 (580)
Q Consensus 474 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 553 (580)
+.+++..+++....+.-+.-....+...+..+..+-..++.++|..+|++.+..+|+ ++++..+.-+++.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 334445555555555444444444555555666666666666666666666666665 555666666666666666665
Q ss_pred HHH
Q 008025 554 DFS 556 (580)
Q Consensus 554 ~~~ 556 (580)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 555
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.19 E-value=9.3 Score=39.26 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=46.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNG---------NNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
...+...+.-.|||..|++.++. ++++. -+...++..|.+|+.+++|.+|++.|...+--
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777889999999998765 33322 24567899999999999999999999987654
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.14 E-value=7.1 Score=36.09 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=55.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 506 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
.-+++.++..+|++..+.-++-+|.+......+-.+|.-.|+|++|...++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3456778999999999999999999999998899999999999999999999999999874
No 390
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=81.72 E-value=7.6 Score=40.71 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=66.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 488 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 488 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
++-++.+|.|.++|+.|-.-+..+ .+++..+.|++.+...|..+.+|-.........++|+.-++.|.++|.-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 667889999999999988877555 8999999999999999999999999999999999999999999999854
No 391
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.91 E-value=85 Score=33.69 Aligned_cols=116 Identities=11% Similarity=-0.001 Sum_probs=96.9
Q ss_pred chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAY 535 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~ 535 (580)
....+.+...|..........|++....-.|++++--.....+.|...+......|+.+-|-..+.++.+.. |..+..+
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~ 369 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH 369 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence 334567778888889999999999999999999998888888999999988888899999998888888874 5566677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
..-+..-...|++..|...+++..+-.|+...+-...
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~ 406 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRK 406 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHH
Confidence 7777778888999999999999998888866554433
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.75 E-value=7.7 Score=35.62 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565 (580)
Q Consensus 515 ~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 565 (580)
+..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 444556666777776 56777777888888888888888888888887743
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.71 E-value=4.6 Score=24.14 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 547 YYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 547 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+++++...|+++++..|.+...|..+...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45556666666666666666666555443
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.55 E-value=6.2 Score=38.07 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
.+...+..+...|.+.+|+...++++.++|=+...+..+-..+..+||--++.++|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445666777777777777777777777777777777777777777777777666653
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.33 E-value=7.6 Score=37.49 Aligned_cols=61 Identities=23% Similarity=0.168 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 559 (580)
......+..|.+.|.+.+|++.+++++.++|-+...+..+-.+|..+|+--.+.+.|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3455667888999999999999999999999999999999999999999888888877654
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.38 E-value=34 Score=35.20 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh-CCCC-HHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcC---------------
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKL-NGNN-ATYYSNRAAAY--LESGSFLQAEADCTKAINLD--------------- 528 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~-~~~~~~la~~~--~~~~~~~~A~~~~~~al~l~--------------- 528 (580)
...+..+++.++|..|.+.++...+. .++. ...+..++.+| ...-++++|.+.+++.+...
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~ 214 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVE 214 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 34555666666666666666666654 2222 12333333333 34455666666666544321
Q ss_pred ---------------CCCH--HHHHHHHHH------HHHcCCHHHHHHHHHHHHhh
Q 008025 529 ---------------KKNV--KAYLRRGTA------REMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 529 ---------------p~~~--~a~~~lg~~------~~~~g~~~~A~~~~~~al~l 561 (580)
.... ..+..+..+ -...|+|+.|..-+-+++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 215 VLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0000 022233333 24578899999988888876
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.03 E-value=10 Score=36.35 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
........+|..+++.|+|++|++.|+.+....-.+ ......+..|+.++|+.+..+..+-+.+
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344556788999999999999999999986654332 3566778888888888888777765544
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.03 E-value=20 Score=34.40 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--N----VKAYLRRGTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al 559 (580)
.....+|.-|+..|+|++|++.|+++...... + ......+-.|+..+|+.++.+...-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45568999999999999999999999766332 2 3466777888999999888777654443
No 399
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=78.88 E-value=36 Score=30.01 Aligned_cols=99 Identities=13% Similarity=0.026 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--------DKKNVKAY 535 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--------~p~~~~a~ 535 (580)
++.+.-..-.+.|.|.+|.+.+++.++.. .+-..+|..+++|.+...+-..-++.=++.++. .|-++.+-
T Consensus 95 A~leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAt 174 (220)
T PF10858_consen 95 AALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATAT 174 (220)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHH
Confidence 34445556678899999999999998753 445678889999988776533323333333322 34556667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
...+..-.+.|+-.+|+++++..+.-+-.
T Consensus 175 I~kaiwdik~nm~~~aeknL~~l~~Snn~ 203 (220)
T PF10858_consen 175 IIKAIWDIKNNMKNQAEKNLKNLLASNNV 203 (220)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhcch
Confidence 77788888999999999999998876543
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.54 E-value=7.1 Score=33.74 Aligned_cols=53 Identities=28% Similarity=0.259 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 549 (580)
-.+.....+...+..|+|.-|.+.++.++..+|+|.++...++.+|.+++.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34667777888889999999999999999999999999999999998877543
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.04 E-value=22 Score=44.05 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------- 531 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------- 531 (580)
+..-.+.|.+.|....+.|+++.|-.+.-+|.+.. -+.++..+|..+.+.|+-..|+..+++.++++-.+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 45667899999999999999999999999998877 46899999999999999999999999999764221
Q ss_pred ---------HHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 532 ---------VKAYLRRGTAREMLGY--YKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 532 ---------~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
..+.+..+.-....++ ..+-+++|+++.+..|...+-++.++.-..+
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 1234444444445554 3566788999999999777777777754443
No 402
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.42 E-value=16 Score=41.35 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
+.+..|.++|.+.++.+...+|++.|-|+ +++..|.+.-.+..+.|.|++-++++.-+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45678999999999999999999999886 56666666666666777777666665544
No 403
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.23 E-value=14 Score=28.02 Aligned_cols=30 Identities=27% Similarity=0.173 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
.+..+...|..+-+.|++.+|+.+|+++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566667777777777777777666554
No 404
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.84 E-value=11 Score=38.39 Aligned_cols=61 Identities=15% Similarity=0.030 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
..-.+..+|++.++.+-|+.+-.+.+.++|.++.-+...|.|+..+.+|.+|...+.-+.-
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346889999999999999999999999999999999999999999999999877655543
No 405
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.93 E-value=1e+02 Score=31.48 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY------YSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
+.+.++.+|.+|.+..-+.+|..|.+++.+++.+.|++... .-.+..+-.-+|++.+-..+.+..++ ..-.
T Consensus 243 nne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~---ksL~ 319 (493)
T KOG2581|consen 243 NNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR---KSLR 319 (493)
T ss_pred cHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---HHHH
Confidence 34778888999999999999999999999999999985322 22233333455665543332222111 1233
Q ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCC
Q 008025 534 AYLRRGTA--REMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 534 a~~~lg~~--~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
.|+.|..+ .-.+.+|.+-++.|..-+..+..
T Consensus 320 ~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~t 352 (493)
T KOG2581|consen 320 PYFKLTQAVRLGDLKKFNETLEQFKDKFQADGT 352 (493)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCc
Confidence 56666544 33455666666666666655543
No 406
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=74.86 E-value=15 Score=30.59 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHH----HHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTK----AIN 526 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~----al~ 526 (580)
.+..+|+..++.+++-.++-+|++|+.+..+- .-...|||..+..+|+.+-.+++++- ++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999863321 23578999999999999888888864 455
Q ss_pred cCCC
Q 008025 527 LDKK 530 (580)
Q Consensus 527 l~p~ 530 (580)
+-|.
T Consensus 83 LiPQ 86 (140)
T PF10952_consen 83 LIPQ 86 (140)
T ss_pred hccC
Confidence 5554
No 407
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.73 E-value=12 Score=28.36 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=17.6
Q ss_pred HHHHHHHcCCHHHHHHHH-------HHHHHcCCCCHHHHHHHH
Q 008025 504 RAAAYLESGSFLQAEADC-------TKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 504 la~~~~~~~~~~~A~~~~-------~~al~l~p~~~~a~~~lg 539 (580)
+|.-+-+.|++.+|+.+| .++++..|++..-.....
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 333344445544444444 444555777666444333
No 408
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.75 E-value=44 Score=35.61 Aligned_cols=99 Identities=13% Similarity=0.002 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCC----------------CH---HHHHHHHHHHHHcCCHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----LNGN----------------NA---TYYSNRAAAYLESGSFL 515 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-----~~p~----------------~~---~~~~~la~~~~~~~~~~ 515 (580)
.|-..+.+.+.+.++..+|+.+-|-+...++|= +.|. +- .+++..-....+.|-+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 466677777788888888888888777777762 1121 11 12222223334567777
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 008025 516 QAEADCTKAINLDKK-NVKAYLRRGTAR-EMLGYYKEAIEDFSYA 558 (580)
Q Consensus 516 ~A~~~~~~al~l~p~-~~~a~~~lg~~~-~~~g~~~~A~~~~~~a 558 (580)
-|.++|.-.++++|. ++-+...+-..| .+..+|+==++.++..
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 778888777788776 665554444443 3555665555555543
No 409
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.63 E-value=23 Score=36.23 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=56.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH-----------HHhCCCCHHHHHHHHHHHHHcCCH---HH-------HHHHHHHHH
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEA-----------IKLNGNNATYYSNRAAAYLESGSF---LQ-------AEADCTKAI 525 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~a-----------l~~~p~~~~~~~~la~~~~~~~~~---~~-------A~~~~~~al 525 (580)
++..|..+++.+.|.+|+..+-.| ++.--+.+-.....-|||+.+.+. .. |.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 445566666666666666655443 333444555666778899888753 22 333332221
Q ss_pred --------HcC-CCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 526 --------NLD-KKNVK------AYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 526 --------~l~-p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.+. ++.++ .+...|...+.+|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 111 22222 3445599999999999999999987643
No 410
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.22 E-value=6.1 Score=37.16 Aligned_cols=103 Identities=14% Similarity=0.031 Sum_probs=60.2
Q ss_pred HHccCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHcCCH-HHH-HHHHHHHHHc--CCCCHH--HHH
Q 008025 475 YKDKQWLKAISFYTEAIKLN---GNN---------ATYYSNRAAAYLESGSF-LQA-EADCTKAINL--DKKNVK--AYL 536 (580)
Q Consensus 475 ~~~g~~~~Ai~~~~~al~~~---p~~---------~~~~~~la~~~~~~~~~-~~A-~~~~~~al~l--~p~~~~--a~~ 536 (580)
+..|+|+.|++....+|+.+ |+. .+-...-+....+.|+. +-. ...+.+...- -|+... .|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 56899999999999999874 432 12233444444555542 111 1112222110 133333 444
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 537 RRGTARE---------MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 537 ~lg~~~~---------~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
..|..+. ..++.++|..++++|++++|+ ..+...+.++.+.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~ 223 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERR 223 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHH
Confidence 4566663 456889999999999999976 3444545555443
No 411
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=71.13 E-value=1.5e+02 Score=31.81 Aligned_cols=117 Identities=12% Similarity=-0.050 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHcCCCC---HHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA---DCTKAINLDKKN---VKA 534 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~l~p~~---~~a 534 (580)
+.....+...+...-.+|++..|...|++..+-.|+...+-.........+++.+.+.. .+....+-..++ ...
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 34455666677788889999999999999999889988887777888888888888773 333322222221 223
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 535 YLRRGTA-REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 535 ~~~lg~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+...+.. +.-.++-+.|...+.++++..|.+...+..+-.+..
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 4444443 446679999999999999999999988888776643
No 412
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=71.12 E-value=8.4 Score=44.72 Aligned_cols=100 Identities=20% Similarity=0.131 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAIS------FYT-EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD------ 528 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~------~~~-~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~------ 528 (580)
..+....+.|.....++.+.+|.+ .++ ..-.+.|+....|..++..+.+++++++|+....++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 456677888888888999998888 444 2233577888999999999999999999999998877663
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 529 --KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 529 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
|+....|.+++...+..++...|...+.+++++
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 455678999999999999999999999888866
No 413
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.91 E-value=10 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 512 GSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 512 ~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
|+++.|.+.|+++++..|.+...|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456666666666666666666665544
No 414
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=70.37 E-value=53 Score=34.54 Aligned_cols=83 Identities=18% Similarity=0.086 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
+...|..+|...+++|+++-|.++|+++- -+..|...|.-.|+-+.=.+..+.+.+.... .-.-.++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-----n~af~~~ 412 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERGDI-----NIAFQAA 412 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-----HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHccCH-----HHHHHHH
Confidence 45588999999999999999999998862 3445666777778876655555555444321 1122345
Q ss_pred HHcCCHHHHHHHHHHH
Q 008025 543 EMLGYYKEAIEDFSYA 558 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~a 558 (580)
+.+|++++..+.+.+.
T Consensus 413 ~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 413 LLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHT-HHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHc
Confidence 5667777776666543
No 415
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.40 E-value=38 Score=35.76 Aligned_cols=63 Identities=16% Similarity=-0.073 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINL---DKK----NVKAYLRRGTAREMLGY-YKEAIEDFSYALVLE 562 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l---~p~----~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~ 562 (580)
.++.+|.++..+|+...|.+++...++. ... .+.++|.+|..|..++. ..++.+++.+|-+..
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 3455666666666666666666655522 111 24566666666666666 666666666666554
No 416
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.97 E-value=69 Score=35.38 Aligned_cols=58 Identities=10% Similarity=-0.010 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDK---------KNVKAYLRRGTAREMLGYYKEAIEDFS 556 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~ 556 (580)
..++.++.+.+-.+++.+|.+..+.+.+... ..+..+|..|..+...|+.+.|+..|.
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3456778888899999999999988776532 236788999999999999999999998
No 417
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=68.77 E-value=61 Score=31.56 Aligned_cols=107 Identities=12% Similarity=0.013 Sum_probs=65.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH---HcCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 471 GNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYL---ESGSF----LQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 471 g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~---~~~~~----~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
...+++.++|++=-+.|++..+...+ ..+..|..+.... .+... ..-.+.++.=++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44566777887777777777654222 1111122222221 11111 134556666677788888777777776
Q ss_pred HHHcC----------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 542 REMLG----------------------YYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 542 ~~~~g----------------------~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+.... -.+.|..++.++++++|....+...+-++-.
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~ 144 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISA 144 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Confidence 64331 2578889999999999999888887766644
No 418
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=68.43 E-value=31 Score=39.74 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=66.7
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q 008025 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-----YYKEAI 552 (580)
Q Consensus 478 g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g-----~~~~A~ 552 (580)
..+++|+..|++. .-.|.-+--|...|.+|..+++|++=+++|.-|++..|+.+..-...-.+-+++. +...|.
T Consensus 533 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 533 RDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688898888874 3456677889999999999999999999999999999988765443333332222 235566
Q ss_pred HHHHHHHhhCCCCHHH
Q 008025 553 EDFSYALVLEPTNKRA 568 (580)
Q Consensus 553 ~~~~~al~l~p~~~~~ 568 (580)
...--++...|.....
T Consensus 612 ~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 612 VFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHHhCcccccc
Confidence 7777788888876543
No 419
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=67.93 E-value=47 Score=34.93 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 495 GNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 495 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
-++...|..||...+.+|+++-|+++|+++
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 346778888888888888888888888774
No 420
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.18 E-value=37 Score=28.94 Aligned_cols=61 Identities=20% Similarity=0.115 Sum_probs=37.3
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 501 YSNRAAAY-LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 501 ~~~la~~~-~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
|..+|.-+ .++++-++-.+.+....+.+..+++.+..+|.+|.++|+..++.+.+++|-+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33444333 35566666666666666666667888888888888888888888888888764
No 421
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.70 E-value=73 Score=30.95 Aligned_cols=64 Identities=11% Similarity=-0.071 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.+++.++|..|.+.++-+.+.+++.+.++-.- +-.-...++|..|..+.-.++.++..+..++.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 45666777777777776666666666554321 11223344455554444444444444444443
No 422
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=66.69 E-value=29 Score=28.34 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~ 513 (580)
+........|...+..|||.+|.+...++-+..+...-.+..-+.+-.++||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 4566677788888888999999998888876655544444444555555543
No 423
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.58 E-value=91 Score=30.80 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHcCCCCHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKA--INLDKKNVKA 534 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~l~p~~~~a 534 (580)
.....+|..|-+.++|..|-..+. ++.++.. -...+..++.+|++.++..+|..+..++ +..+..|...
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 445667888888888887776654 2333321 1245667788888888888888877775 3334455554
Q ss_pred HHHH----HHHHHHcCCHHHHHHHHHHHHhh
Q 008025 535 YLRR----GTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 535 ~~~l----g~~~~~~g~~~~A~~~~~~al~l 561 (580)
...+ +.++...++|-||.+.|.+....
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 44455666777777766665544
No 424
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.41 E-value=41 Score=28.63 Aligned_cols=63 Identities=17% Similarity=0.067 Sum_probs=40.3
Q ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 466 IAKEKGNQAY-KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 466 ~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
.|..+|.-.+ ++|+-++--+.++...+-+..++..+..+|.+|-++|+..++-+.+.+|.+..
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3445554444 44555555556666655555678999999999999999999999999987743
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.80 E-value=1.1e+02 Score=30.30 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 530 KNVKAY--LRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 530 ~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
.+...| -+++.|..++|+..||.+.++...+-.|
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 344444 4568889999999999999999888777
No 426
>PF15469 Sec5: Exocyst complex component Sec5
Probab=64.09 E-value=45 Score=30.21 Aligned_cols=83 Identities=11% Similarity=-0.023 Sum_probs=43.6
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008025 473 QAYKDKQWLKAISFYTEAIKLNGNNA--TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550 (580)
Q Consensus 473 ~~~~~g~~~~Ai~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 550 (580)
.++++|+|+.++..|.++..+..+.. ...+.. + ..+.++.++.|.+.+.. .+ .......++
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~--v---~~eve~ii~~~r~~l~~---------~L---~~~~~s~~~ 157 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK--V---WSEVEKIIEEFREKLWE---------KL---LSPPSSQEE 157 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH--H---HHHHHHHHHHHHHHHHH---------HH---hCCCCCHHH
Confidence 34678999999999998877643331 111111 1 11112222222221111 00 001156777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHH
Q 008025 551 AIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 551 A~~~~~~al~l~p~~~~~~~~l 572 (580)
....+...++|+++...+|..+
T Consensus 158 ~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 158 FLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHhCCCCCCHHHHHH
Confidence 8888888888888766666554
No 427
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.86 E-value=1.2e+02 Score=29.30 Aligned_cols=93 Identities=11% Similarity=-0.057 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHc------CCC
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGSFL-QAEADCTKAINL------DKK 530 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~l------~p~ 530 (580)
..+.++.=+..+++.+++..|.+...-.++. .+.+.....++..+......-+ +-.+..+++++- .-.
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 3455666667777777777766664444432 2333444455666655554321 122222222221 224
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDF 555 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~ 555 (580)
++..+..+|..|.+.+++.+|+.+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5677777788888888887777776
No 428
>PF12854 PPR_1: PPR repeat
Probab=62.76 E-value=18 Score=22.37 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
..|..+-..|.+.|+.++|++.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4555556666666666666665553
No 429
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.69 E-value=20 Score=26.49 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
+..+...|..+-+.|+|++|+.+|.++++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566666667777777777776664
No 430
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.70 E-value=28 Score=33.33 Aligned_cols=26 Identities=12% Similarity=-0.064 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
..+|.+|+..++|.+-.+.+++..+-
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHH
Confidence 44677777777777666666655544
No 431
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=60.78 E-value=1.6e+02 Score=30.16 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=15.8
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 008025 542 REMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l 561 (580)
-...|+|+.|..-+-+++++
T Consensus 256 r~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 256 RATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 34778999998888888775
No 432
>PF12854 PPR_1: PPR repeat
Probab=60.31 E-value=22 Score=22.03 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~ 557 (580)
+...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456788889999999999999999875
No 433
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.83 E-value=22 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 493 (580)
.+..+...|..+=+.|+|++|+.+|.++++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777653
No 434
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.57 E-value=92 Score=32.34 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=53.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-----C---HHH--H------HHHHHHH-HHcCCH-HHHHHHHHHHHHc--
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN-----N---ATY--Y------SNRAAAY-LESGSF-LQAEADCTKAINL-- 527 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-----~---~~~--~------~~la~~~-~~~~~~-~~A~~~~~~al~l-- 527 (580)
.+.|..++..|+|.+|+..|+..|..-|- . .++ + |.+|... ++..+. +...+.-+|.+++
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAA 287 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAA 287 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 44677888999999999999998875221 1 111 1 1222111 111111 1112222333333
Q ss_pred -------CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025 528 -------DKKNVKAYLRRGTA-REMLGYYKEAIEDFSYALVLEPTNKRASL 570 (580)
Q Consensus 528 -------~p~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 570 (580)
.|.+...-.+.|+. .++.++|..|....++.|++.|....+..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 22111122222332 35788999999999999999998765443
No 435
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.33 E-value=33 Score=31.41 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008025 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (580)
Q Consensus 481 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p 529 (580)
+..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444555666666667 578899999999999999999999999999999
No 436
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=58.07 E-value=22 Score=38.18 Aligned_cols=81 Identities=14% Similarity=-0.011 Sum_probs=40.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g 546 (580)
+...+..+.+...+.-|-+.|.+.=. .-.+-..+.+.+++.+|....++--+..|+ .|+..|.-+.+..
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhhh
Confidence 34444444555555555555554311 112334445556666666555554443332 4555555555666
Q ss_pred CHHHHHHHHHHH
Q 008025 547 YYKEAIEDFSYA 558 (580)
Q Consensus 547 ~~~~A~~~~~~a 558 (580)
+|+||.+.|.+|
T Consensus 819 rFeEAqkAfhkA 830 (1081)
T KOG1538|consen 819 RFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHHHHHHHh
Confidence 666666555444
No 437
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.04 E-value=74 Score=33.74 Aligned_cols=71 Identities=14% Similarity=-0.028 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGN----NATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKN 531 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~----~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~ 531 (580)
.+..-.++.+|.++.+.|+-.+|..+|+..++. ..+ -+.++|.||..|..++. ..++..++.+|-+-..++
T Consensus 446 Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 446 DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 355667778999999999999999999998854 222 26799999999999999 999999999998876443
No 438
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.60 E-value=24 Score=26.89 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
.+..+...|..+=+.|+|++|+.+|.++++
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344556666667777777777777766654
No 439
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=57.27 E-value=30 Score=37.76 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=44.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008025 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY 548 (580)
Q Consensus 469 ~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~ 548 (580)
..+..|.+.|+|+-|.+.|.++- ....--..|-+.|++.+|.+..++...-. .-...|...+.-+.+.|+|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~e-~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGPE-ATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCch-hHHHHHHHhHHhHHhhcch
Confidence 45666666666766666666542 11222334445666666666655543311 1234566667777788888
Q ss_pred HHHHHHH
Q 008025 549 KEAIEDF 555 (580)
Q Consensus 549 ~~A~~~~ 555 (580)
.+|.+.|
T Consensus 841 ~eaeqly 847 (1636)
T KOG3616|consen 841 AEAEQLY 847 (1636)
T ss_pred hhhhhee
Confidence 7777665
No 440
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.07 E-value=93 Score=35.74 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 496 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+.+..|..+|.+.++.+...+|++.|-| -+++..|...-.+..+.|+|++=+.+++.+-+-
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 4578999999999999999999999943 467888999999999999999999999988765
No 441
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.76 E-value=38 Score=32.65 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=85.6
Q ss_pred hchHHHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHcCCC
Q 008025 459 NQKQSAEIAKEKGNQ--AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY------LESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~--~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~l~p~ 530 (580)
.+|+.-+.|..+-.. ++...++..-+...++.++.++.+.-.|+.+-.+. ..-.++++-.++-..+|+.|+-
T Consensus 103 ~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~ 182 (328)
T COG5536 103 DNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIY 182 (328)
T ss_pred cCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCC
Confidence 345555555544433 34446788889999999999999887777666655 2233455667778888999999
Q ss_pred CHHHHHHHHHH---HHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 531 NVKAYLRRGTA---REMLGY------YKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 531 ~~~a~~~lg~~---~~~~g~------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
|..+|.++-.. ..+.|+ +++-+++.-+++-.+|++.++|..+..+..
T Consensus 183 N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~ 238 (328)
T COG5536 183 NNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSS 238 (328)
T ss_pred ChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhc
Confidence 99999887333 233333 677788888899999999999988876644
No 442
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.74 E-value=19 Score=21.00 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=10.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 008025 502 SNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 502 ~~la~~~~~~~~~~~A~~~~~~a 524 (580)
..+-.+|.+.|++++|.+.+++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 33444444445555554444443
No 443
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.57 E-value=1.1e+02 Score=29.70 Aligned_cols=93 Identities=16% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHH-------------------HHHHH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFL-------------------QAEAD 520 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~-------------------~A~~~ 520 (580)
.++++...+.+++++|+..|.+.+.. -.+.-....+++..|...|++. +-.+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Q ss_pred HHHHHHcCCCCHH---------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 521 CTKAINLDKKNVK---------------------------AYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 521 ~~~al~l~p~~~~---------------------------a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
.+..++..|...+ .-..+..++++.|+|.+|+...+..+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 444
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.16 E-value=97 Score=33.60 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 522 (580)
....+...+..+..+-.-++.++|-++|++.+..+|+ ..++..+.-+++.|-...|...+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 38 EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3456677788899998999999999999999999998 677778888888888888877776
No 445
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=53.86 E-value=65 Score=26.30 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~ 547 (580)
....|...+..||+++|.+.+.++-+..++..-.|..-+.+-..+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34456667778999999999999988766555566656766666654
No 446
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=53.76 E-value=1.1e+02 Score=25.98 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522 (580)
Q Consensus 475 ~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 522 (580)
...+.....+.++++.+..++.+...+..+..+|.+.. ..+.++.++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34567777888888887777777777777777776543 334444444
No 447
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.74 E-value=2.3e+02 Score=27.67 Aligned_cols=101 Identities=10% Similarity=-0.000 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK- 533 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~- 533 (580)
....+++.++|..|.+.+|.+.+.+...+.++..-.. .-....+|.+|-.+.-.++.++..+-.++..-++-.
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 4668899999999999999999999988887653321 233456777776555567777777777877654421
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 534 --AYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 534 --a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.--..|+-.....+|.+|...+-..+.-
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 1122466667778889998888776644
No 448
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.95 E-value=48 Score=19.83 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=7.2
Q ss_pred HHHHHHcCCCCHHHHHHH
Q 008025 521 CTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 521 ~~~al~l~p~~~~a~~~l 538 (580)
..+++..+|.+..+|..+
T Consensus 6 ~~~~l~~~pknys~W~yR 23 (31)
T PF01239_consen 6 TKKALEKDPKNYSAWNYR 23 (31)
T ss_dssp HHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHCcccccHHHHH
Confidence 333444444444444333
No 449
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.94 E-value=32 Score=26.03 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 493 (580)
.+..+...|...=..|+|++|+..|.++++.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3344455555556667777777777776654
No 450
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=51.27 E-value=34 Score=21.36 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHh
Q 008025 548 YKEAIEDFSYALV 560 (580)
Q Consensus 548 ~~~A~~~~~~al~ 560 (580)
+++|.++|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555543
No 451
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=50.58 E-value=38 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
+..+...|...-..|+|++|+.+|.++++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555566666667777777777766664
No 452
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.77 E-value=3.7e+02 Score=29.08 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=52.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HHcCCCCHHHHHHHHHHHHH
Q 008025 472 NQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAY-LESGSFLQAEADCTKA-----INLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 472 ~~~~~~g~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a-----l~l~p~~~~a~~~lg~~~~~ 544 (580)
..+-+.|=+..|.+...-.++++|. ++-+...+-..| ++..+|+=-++.++.. +.+-|+ .-|-++++++.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS~AlA~f~ 426 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYSLALARFF 426 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHHHHHHHHH
Confidence 3445678889999999999999998 776665555554 3445666555555443 222333 34556666655
Q ss_pred cCCHHH-HHHHHHHHHhhC
Q 008025 545 LGYYKE-AIEDFSYALVLE 562 (580)
Q Consensus 545 ~g~~~~-A~~~~~~al~l~ 562 (580)
+..-++ +.+....++...
T Consensus 427 l~~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQA 445 (665)
T ss_pred HhcCChhhHHHHHHHHHHH
Confidence 543332 555555555443
No 453
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=49.63 E-value=32 Score=20.99 Aligned_cols=14 Identities=21% Similarity=0.081 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHHH
Q 008025 513 SFLQAEADCTKAIN 526 (580)
Q Consensus 513 ~~~~A~~~~~~al~ 526 (580)
+..+|+.+|+++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 454
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.46 E-value=2.8e+02 Score=27.65 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK- 533 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~- 533 (580)
.+-.+++..++..|.+.||-+.|++.+.+..+..-. -.-+...+|..|....=..+-++-....++..-++-.
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 456788999999999999999999998887765322 1234456777775555555666666666666544321
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 534 --AYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 534 --a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.--..|+-.....+|.+|...|-..+.-
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 1222355666777888888888766643
No 455
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.44 E-value=3e+02 Score=35.03 Aligned_cols=82 Identities=12% Similarity=0.019 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHH---hCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008025 480 WLKAISFYTEAIK---LNG----NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (580)
Q Consensus 480 ~~~Ai~~~~~al~---~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 552 (580)
..+-|-.+++++- .+| .-.+.|.+.|.+....|+++.|...+-+|.+.. -++++..+|..+.+.|+...|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4444555555442 232 347899999999999999999999999998877 5789999999999999999999
Q ss_pred HHHHHHHhhCC
Q 008025 553 EDFSYALVLEP 563 (580)
Q Consensus 553 ~~~~~al~l~p 563 (580)
..+++.++++-
T Consensus 1723 ~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1723 SVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHhhc
Confidence 99999997653
No 456
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=49.18 E-value=40 Score=24.83 Aligned_cols=18 Identities=33% Similarity=0.542 Sum_probs=7.6
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 008025 542 REMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al 559 (580)
+.+.|++++|+++|.+++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHTTSHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 334444444444444333
No 457
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.00 E-value=3.9e+02 Score=30.43 Aligned_cols=93 Identities=18% Similarity=0.079 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHH-
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDK----KNVK- 533 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p----~~~~- 533 (580)
++..--.|.+....+++++|++..+.++..-|.+ ..++..++.+..-.|++++|..+..++.+... -...
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 4444557888899999999999999999987764 45778899999999999999999988888732 2222
Q ss_pred -HHHHHHHHHHHcCC--HHHHHHHHH
Q 008025 534 -AYLRRGTAREMLGY--YKEAIEDFS 556 (580)
Q Consensus 534 -a~~~lg~~~~~~g~--~~~A~~~~~ 556 (580)
+.+..+.++..+|+ +++....|+
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33445777888883 444444443
No 458
>PF13041 PPR_2: PPR repeat family
Probab=48.98 E-value=45 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
..|+.+-..|.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45666667777777777777777777665
No 459
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=48.70 E-value=40 Score=20.01 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
|+.+-.+|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444455555555555555555433
No 460
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=48.67 E-value=24 Score=26.70 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=12.2
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008025 511 SGSFLQAEADCTKAINL 527 (580)
Q Consensus 511 ~~~~~~A~~~~~~al~l 527 (580)
.++|++|.++|..+++.
T Consensus 19 ~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 19 EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 37777777777777664
No 461
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.50 E-value=2.2e+02 Score=31.65 Aligned_cols=94 Identities=10% Similarity=-0.049 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
....+|......+.-.+|...+.++..... +.+.+..+....+..++++.+..++...-+...+....+|-+|.++..+
T Consensus 281 ~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~ 359 (644)
T PRK11619 281 LRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQ 359 (644)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHc
Confidence 334445444444335566666666543322 2233444444555777887777777664443345667778888888788
Q ss_pred CCHHHHHHHHHHHHh
Q 008025 546 GYYKEAIEDFSYALV 560 (580)
Q Consensus 546 g~~~~A~~~~~~al~ 560 (580)
|+.++|...|+++.+
T Consensus 360 g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 360 GRKAEAEEILRQLMQ 374 (644)
T ss_pred CCHHHHHHHHHHHhc
Confidence 888888888888754
No 462
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.32 E-value=44 Score=33.49 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAE 518 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~ 518 (580)
......+...|+.++.+++|++|...|..|..+.. ++..+++..|..+++++++...+
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778899999999999999999999998732 34678888999998888776544
No 463
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.89 E-value=40 Score=25.60 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 503 NRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 503 ~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
..|.-.-+.|+|++|+.+|.++++
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 334444444455555555444443
No 464
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.13 E-value=45 Score=35.71 Aligned_cols=67 Identities=21% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 486 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+.++||++.++ ++..+.++ +++|+++.|.+...+ .++..=|-.||.+....+++..|.+||.++..+
T Consensus 629 ~~e~AL~~s~D-~d~rFela---l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 629 MKEQALELSTD-PDQRFELA---LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred chHhhhhcCCC-hhhhhhhh---hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 33444555443 23444433 567888877665533 345666778888888888888888888877544
No 465
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.59 E-value=1.1e+02 Score=33.08 Aligned_cols=81 Identities=21% Similarity=0.158 Sum_probs=49.6
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHH---------
Q 008025 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--------KKNVKAY--------- 535 (580)
Q Consensus 473 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--------p~~~~a~--------- 535 (580)
...+.|+++.|.+...+ .++..-|..||.+.+..+++..|.+++.++-.+. -++.+.+
T Consensus 646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 33455666665554333 2455677778888888888888888887765542 2333322
Q ss_pred ---HHHH-HHHHHcCCHHHHHHHHHHH
Q 008025 536 ---LRRG-TAREMLGYYKEAIEDFSYA 558 (580)
Q Consensus 536 ---~~lg-~~~~~~g~~~~A~~~~~~a 558 (580)
+|++ .+|+..|+++++.+.+...
T Consensus 721 ~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 721 QGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 2333 3567888888888777554
No 466
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=46.30 E-value=47 Score=25.00 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
.+...|..+-+.|++++|+.+|.++++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555666666666555554
No 467
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=46.22 E-value=61 Score=24.65 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=11.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 008025 506 AAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 506 ~~~~~~~~~~~A~~~~~~al~ 526 (580)
.-.-+.|+|++|+.+|.++|+
T Consensus 14 ve~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 14 VELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334455666666665555544
No 468
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=46.04 E-value=1.9e+02 Score=25.49 Aligned_cols=94 Identities=19% Similarity=0.060 Sum_probs=66.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC--------------------------------HHHHHHHHHH
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNN--------------------------------ATYYSNRAAA 507 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~-------~p~~--------------------------------~~~~~~la~~ 507 (580)
....+...+.+|+.++|+..+.++..+ +|.. .......+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 345777888889999999998888754 1111 2456677888
Q ss_pred HHHcCCHHHHHHHHHHHH-HcC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 508 YLESGSFLQAEADCTKAI-NLD------K-KNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 508 ~~~~~~~~~A~~~~~~al-~l~------p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
+++.|+.+.|.+.++-+- +++ | .........+..+...|+|.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899999999988886542 221 1 1244566788999999999999999998874
No 469
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.87 E-value=1.1e+02 Score=29.61 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=25.9
Q ss_pred HcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhh
Q 008025 526 NLDKKNVKAYLRRGTA-REMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 526 ~l~p~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~l 561 (580)
+.+|.....+..+++. |..+++...|...+....+.
T Consensus 134 ~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 134 KGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3466677777777765 66889999999988777766
No 470
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=45.43 E-value=2.7e+02 Score=29.09 Aligned_cols=117 Identities=8% Similarity=-0.091 Sum_probs=78.8
Q ss_pred chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
++++|.+...|+++-..+-.++.+++-.+.|.+...-.|--..+|...-.--+..++|...+..+.++++-.-+ ...|.
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~ 113 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM 113 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence 45678999999999999999999999999999998877777666655444445568899888888888875432 33333
Q ss_pred HHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 537 RRGTAREMLGY----------YKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 537 ~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
.. .-|.+.-+ .-+|.+..-.+.-.+|.....|......
T Consensus 114 lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~f 161 (660)
T COG5107 114 LY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLF 161 (660)
T ss_pred HH-HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHH
Confidence 22 22222211 2344444444445567766666655543
No 471
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=45.28 E-value=1.5e+02 Score=29.43 Aligned_cols=69 Identities=13% Similarity=0.012 Sum_probs=50.2
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----GNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
-.++..+.+|..+...+..|+|..|-.++-....+. +++..+....-..-.-..+++-|++.+.+.-+.
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 457889999999999999999999988765554442 233445544444555677899999998876554
No 472
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=44.02 E-value=28 Score=33.13 Aligned_cols=91 Identities=23% Similarity=0.126 Sum_probs=59.1
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcCCCC------HHHHHH
Q 008025 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----------SGSFLQAEADCTKAINLDKKN------VKAYLR 537 (580)
Q Consensus 474 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----------~~~~~~A~~~~~~al~l~p~~------~~a~~~ 537 (580)
++..++.-.|+..|...+.-.|.+..+...-+.|..+ --....|.+++.+||-+.... ....+.
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~ 84 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFR 84 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhh
Confidence 3444555567777777776666654332222222211 123567888888888774322 235577
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
++..|+.+++|+-|.-||.+|+.+.-+
T Consensus 85 ~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 85 YFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999999999988543
No 473
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.99 E-value=3.3e+02 Score=27.35 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=36.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh----------CCC--------------------C---HHHHHHHHHHHHHcCCH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKL----------NGN--------------------N---ATYYSNRAAAYLESGSF 514 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~----------~p~--------------------~---~~~~~~la~~~~~~~~~ 514 (580)
.+.|..++..++|.+....+..+-+. .|. . ...++.+|.-|+..+|+
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 44677777778877766665544321 111 0 23456678888888888
Q ss_pred HHHHHHHHHHHHc
Q 008025 515 LQAEADCTKAINL 527 (580)
Q Consensus 515 ~~A~~~~~~al~l 527 (580)
+.|.--++++.+.
T Consensus 142 ~~ArVEfnRan~r 154 (449)
T COG3014 142 AKARVEFNRANER 154 (449)
T ss_pred hhhHHHHHHHHHH
Confidence 7766655555443
No 474
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=43.96 E-value=1.8e+02 Score=26.35 Aligned_cols=95 Identities=18% Similarity=0.077 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHH-----ccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------------------
Q 008025 463 SAEIAKEKGNQAYK-----DKQ--WLKAISFYTEAIKLNGNNATYYSNRAAAYLES------------------------ 511 (580)
Q Consensus 463 ~~~~~~~~g~~~~~-----~g~--~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~------------------------ 511 (580)
.+++...+|..+.. .++ ..+|.+++.++-.++ +.++.++|.-.|+.-
T Consensus 104 ~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~ 181 (248)
T KOG4014|consen 104 IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLS 181 (248)
T ss_pred CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhh
Confidence 34455555655543 223 567888888887764 445555565555433
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhC
Q 008025 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-----YYKEAIEDFSYALVLE 562 (580)
Q Consensus 512 ~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~l~ 562 (580)
.+.++|.++.-+|.+++ ++.+--|+...|. +| +.++|+.+-+++.++.
T Consensus 182 kDMdka~qfa~kACel~--~~~aCAN~SrMyk-lGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 182 KDMDKALQFAIKACELD--IPQACANVSRMYK-LGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred HhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH-ccCCCCccHHHHHHHHHHHHHHH
Confidence 56788888888888876 5666667766663 44 5788888888887764
No 475
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=43.77 E-value=3.4e+02 Score=27.00 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL----DKKNVKAYLRRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 557 (580)
.-++++++--...|+..+.++..+...++.|+|..|-.++-....+ ++++..+.+..=-+-.-+.+++.|.+.+.+
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~r 192 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTR 192 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455566666677888899999999999999999998876554433 234455555554444567789999999988
Q ss_pred HHhh
Q 008025 558 ALVL 561 (580)
Q Consensus 558 al~l 561 (580)
.-+.
T Consensus 193 Lre~ 196 (432)
T KOG2758|consen 193 LREY 196 (432)
T ss_pred HHHH
Confidence 7766
No 476
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=43.68 E-value=58 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
+..+...|...-..|+|++|+..|.++++
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455556666666666666666666654
No 477
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=43.61 E-value=43 Score=25.66 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHcCC
Q 008025 513 SFLQAEADCTKAINLDK 529 (580)
Q Consensus 513 ~~~~A~~~~~~al~l~p 529 (580)
.|++|.+..+++|+.+.
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 35666666666666653
No 478
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.26 E-value=1.7e+02 Score=26.35 Aligned_cols=73 Identities=12% Similarity=0.024 Sum_probs=40.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 470 KGNQAYKDKQWLKAISFYTEAI-KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
-+..+...|-|++-....+..- ..+|-...+.-.||.+.++-|+|.+|.++|.+... |-+-+....+++.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 4555566666666554443321 22444455666666666677777777776666544 4444455555554443
No 479
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=43.25 E-value=3.7e+02 Score=28.67 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=18.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
|....++++|+..+...++.+..|..+...
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~ 244 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKE 244 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHH
Confidence 334556777777777777776666555543
No 480
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.24 E-value=74 Score=30.56 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=43.6
Q ss_pred HccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 476 KDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 476 ~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
+..+.++|+..|++.+++.++. ..++-.+-.+++.+++|++-++.|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4558999999999999998875 35677888899999999999999988775
No 481
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=43.03 E-value=58 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
.+...|...-+.|+|++|+.+|..+++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555566667666666666654
No 482
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=42.66 E-value=1e+02 Score=25.86 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKN---------------VKAYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
-+..+|...++.+++-.++-+|++|+.+..+- ...-.|+|.-+..+|+.+=.+++++-|-+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 46678899999999999999999998874321 23567889999999999999998865543
No 483
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.71 E-value=61 Score=33.80 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 515 (580)
++...+++...+.+|+|.-+.+.+++++--+|++..+....+.++.++|=-.
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqa 503 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQA 503 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhh
Confidence 3455778999999999999999999999999999999999999998888433
No 484
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=41.02 E-value=58 Score=24.50 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=11.6
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 008025 508 YLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l 527 (580)
+-+.|++++|+.+|.++++.
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 18 ADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 33456666666666665553
No 485
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=40.92 E-value=73 Score=18.89 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
|..+-.++.+.|+++.|.+.+++..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444555555555555554433
No 486
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.89 E-value=2.1e+02 Score=23.45 Aligned_cols=86 Identities=9% Similarity=-0.082 Sum_probs=52.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~ 547 (580)
.+++..---....++|...++..-......-.+..-+...++.+|+|++| +. +...-.++..--..+.+-.++|-
T Consensus 10 AElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll--~~~~~~~pdL~p~~AL~a~klGL 84 (116)
T PF09477_consen 10 AELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LL--LPQCHCYPDLEPWAALCAWKLGL 84 (116)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HH--HHTTS--GGGHHHHHHHHHHCT-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HH--hcccCCCccHHHHHHHHHHhhcc
Confidence 34444445556677777777765555444455666778888889999988 22 22334445555556777888888
Q ss_pred HHHHHHHHHHH
Q 008025 548 YKEAIEDFSYA 558 (580)
Q Consensus 548 ~~~A~~~~~~a 558 (580)
.+++...+.+.
T Consensus 85 ~~~~e~~l~rl 95 (116)
T PF09477_consen 85 ASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877643
No 487
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.84 E-value=3.8e+02 Score=30.62 Aligned_cols=111 Identities=18% Similarity=0.068 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHH-----H-------cCCHHHH--H
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----------NATYYSNRAAAYL-----E-------SGSFLQA--E 518 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----------~~~~~~~la~~~~-----~-------~~~~~~A--~ 518 (580)
......+.|..+...|++.+|++.|...+-.-|- ....+...+.-|. + ....+++ +
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~El 1069 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLEL 1069 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHH
Confidence 3455677888899999999999999998864321 1222233332231 1 1223444 2
Q ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 519 ADCTKAINLDKKN-VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 519 ~~~~~al~l~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
..|=.-.++.|-. ..++..--..+++++++..|....++.+++.|..+.+.....
T Consensus 1070 AaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rk 1125 (1202)
T KOG0292|consen 1070 AAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARK 1125 (1202)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 2222223334432 223333345678999999999999999999998776655443
No 488
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.25 E-value=69 Score=24.25 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 493 (580)
+..+...|...-+.|+|++|+..|..+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555666666777888888777777753
No 489
>PF13041 PPR_2: PPR repeat family
Probab=38.20 E-value=1.2e+02 Score=20.25 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+...|..+=..|.+.|++++|.+.|++-.+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3456777888899999999999999998876
No 490
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.07 E-value=72 Score=28.85 Aligned_cols=53 Identities=6% Similarity=-0.015 Sum_probs=38.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 521 (580)
...-.+++++|.|++|.+.+++..+ +|++......|..+-.+.+.|..-++.+
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
Confidence 3355678999999999999999988 8887777777766665555555544443
No 491
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.77 E-value=3.6e+02 Score=26.94 Aligned_cols=64 Identities=17% Similarity=0.012 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
-.+++.+.+..|.+.||-+.|++.+.+..+-.- +-.-...++|..|....-..+.++..+..++
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE 172 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIE 172 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999988766432 2223445567666554434444444333333
No 492
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.30 E-value=84 Score=22.67 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=6.4
Q ss_pred HHHcCCHHHHHHHHHH
Q 008025 508 YLESGSFLQAEADCTK 523 (580)
Q Consensus 508 ~~~~~~~~~A~~~~~~ 523 (580)
|.++|++++|.+++.+
T Consensus 33 llqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 33 LLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 3344444444444433
No 493
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=37.23 E-value=11 Score=40.69 Aligned_cols=101 Identities=20% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHcCCC-CHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI--KLNGN-NATYYSNRAAAYLESGSFLQAEADCTK--AINLDKK-NVKAY 535 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~--al~l~p~-~~~a~ 535 (580)
.....+..-+..+++.|++..|...+++.- .+.+. ........+.+....+++++|++.+.. ...+.+. ....+
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHH
Confidence 444555667888888999999998888765 23333 345666778888888999999888874 1222222 23344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
..++.++...|++-+|...+-+.-.+-
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~i~l~~lL 128 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARERIALDPLL 128 (536)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhc
Confidence 556888888888877777655444443
No 494
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=36.66 E-value=4.1e+02 Score=27.72 Aligned_cols=96 Identities=19% Similarity=0.057 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------HHHHHHHHHHH-
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGS--------------FLQAEADCTKA- 524 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------~~~A~~~~~~a- 524 (580)
....+|...|-.+||+-|...|+.+.+-..++ +.++...+.+.+..+. ++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 34557888888888888888888877643333 1223334444444442 23333344442
Q ss_pred ---HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 525 ---INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 525 ---l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
......-..+....+.++...+.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111122335555677777888888877777666655
No 495
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.58 E-value=1.9e+02 Score=28.52 Aligned_cols=59 Identities=20% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC------HHHHHH
Q 008025 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY------YKEAIE 553 (580)
Q Consensus 480 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~------~~~A~~ 553 (580)
.++||++..+++..+.. ++|++|+..|+.+++ |+..++-|...++ -.+..+
T Consensus 7 l~kaI~lv~kA~~eD~a---------------~nY~eA~~lY~~ale--------YF~~~lKYE~~~~kaKd~IraK~~E 63 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNA---------------KNYEEALRLYQNALE--------YFLHALKYEANNKKAKDSIRAKFTE 63 (439)
T ss_pred HHHHHHHHHHHhhhcch---------------hchHHHHHHHHHHHH--------HHHHHHHhhhcChhHHHHHHHHHHH
Q ss_pred HHHHHHhh
Q 008025 554 DFSYALVL 561 (580)
Q Consensus 554 ~~~~al~l 561 (580)
++++|-++
T Consensus 64 YLdRAEkL 71 (439)
T KOG0739|consen 64 YLDRAEKL 71 (439)
T ss_pred HHHHHHHH
No 496
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.21 E-value=76 Score=24.32 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHh
Q 008025 480 WLKAISFYTEAIKL 493 (580)
Q Consensus 480 ~~~Ai~~~~~al~~ 493 (580)
|+.|.++.+++|..
T Consensus 5 ~~~A~~~I~kaL~~ 18 (79)
T cd02679 5 YKQAFEEISKALRA 18 (79)
T ss_pred HHHHHHHHHHHhhh
Confidence 44444444444443
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=35.08 E-value=2.5e+02 Score=31.16 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=9.8
Q ss_pred HHHHHHHccCHHHHHHHHH
Q 008025 470 KGNQAYKDKQWLKAISFYT 488 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~ 488 (580)
.|..+.+.|+|+.|+.+|-
T Consensus 712 wg~hl~~~~q~daainhfi 730 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFI 730 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHH
Confidence 3444445555555555543
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.72 E-value=2.4e+02 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
-.+-.+|.+|.+.|+-++|..-|+.--.+.|+....
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 345556666666666666666666655556655433
No 499
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.58 E-value=52 Score=33.49 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008025 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESG 512 (580)
Q Consensus 481 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~ 512 (580)
..|++++++|.. .+++..|.++|.+++.+|
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LG 364 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLG 364 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhh
Confidence 344455554443 334445555555555444
No 500
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=34.49 E-value=2.4e+02 Score=24.57 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=24.2
Q ss_pred HHHHHHHHHcc-CHHHHHHHHHHHHHhCCCC
Q 008025 468 KEKGNQAYKDK-QWLKAISFYTEAIKLNGNN 497 (580)
Q Consensus 468 ~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~ 497 (580)
..+|..+...| ++.++..+|-+||...|+-
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 45788888888 8888888888888887764
Done!