Query 008025
Match_columns 580
No_of_seqs 449 out of 3181
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dc0_A Probable amidase; struc 100.0 4.5E-88 1.5E-92 698.8 27.2 405 12-440 2-432 (434)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 2.4E-87 8.3E-92 703.9 28.5 412 8-441 3-476 (485)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.5E-86 5.2E-91 693.9 27.6 412 9-441 3-469 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 2.5E-86 8.6E-91 690.2 28.6 405 13-441 3-458 (471)
5 3a2q_A 6-aminohexanoate-cyclic 100.0 4.2E-86 1.4E-90 696.7 26.6 415 7-441 5-474 (493)
6 1o9p_A Malonamidase E2; malona 100.0 3.8E-85 1.3E-89 672.0 32.5 393 12-442 3-411 (414)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 2.3E-85 8E-90 688.1 28.3 407 7-441 6-461 (476)
8 1m22_A Peptide amidase, PAM; e 100.0 2.2E-84 7.4E-89 684.5 23.8 408 4-442 4-485 (503)
9 3a1k_A Amidase; AS family enzy 100.0 7.8E-83 2.7E-87 672.0 29.7 376 52-439 82-499 (521)
10 3ppm_A Fatty-acid amide hydrol 100.0 1.1E-80 3.6E-85 657.2 24.5 419 5-444 65-569 (573)
11 4gco_A Protein STI-1; structur 99.8 3.2E-20 1.1E-24 158.9 17.4 118 459-576 8-125 (126)
12 3gyz_A Chaperone protein IPGC; 99.8 2E-17 6.9E-22 145.8 18.8 116 451-566 23-138 (151)
13 2hr2_A Hypothetical protein; a 99.8 2.3E-18 8E-23 150.2 10.4 119 461-579 8-149 (159)
14 4ga2_A E3 SUMO-protein ligase 99.8 1E-17 3.4E-22 148.0 14.2 122 457-578 24-146 (150)
15 3upv_A Heat shock protein STI1 99.8 2.8E-17 9.7E-22 140.2 16.4 118 462-579 2-125 (126)
16 4gcn_A Protein STI-1; structur 99.7 8.6E-17 2.9E-21 137.6 15.7 115 461-576 5-126 (127)
17 2vgx_A Chaperone SYCD; alterna 99.7 8.3E-17 2.9E-21 141.7 15.1 121 457-577 14-134 (148)
18 2xcb_A PCRH, regulatory protei 99.7 1.2E-16 4.2E-21 139.5 15.3 125 454-578 8-132 (142)
19 3rkv_A Putative peptidylprolyl 99.7 1.8E-16 6E-21 141.8 14.9 119 461-579 8-145 (162)
20 3sz7_A HSC70 cochaperone (SGT) 99.7 3.2E-16 1.1E-20 140.3 15.8 119 459-577 6-126 (164)
21 4gyw_A UDP-N-acetylglucosamine 99.7 4.6E-16 1.6E-20 171.3 17.0 134 446-579 25-158 (723)
22 4gyw_A UDP-N-acetylglucosamine 99.6 2.2E-15 7.6E-20 165.9 17.9 121 459-579 4-124 (723)
23 2pl2_A Hypothetical conserved 99.6 3.7E-15 1.3E-19 140.2 16.7 127 450-577 59-196 (217)
24 2h6f_A Protein farnesyltransfe 99.6 1.2E-15 4.1E-20 155.9 13.9 133 446-578 113-246 (382)
25 1p5q_A FKBP52, FK506-binding p 99.6 5E-15 1.7E-19 149.1 18.0 124 455-578 138-276 (336)
26 2fbn_A 70 kDa peptidylprolyl i 99.6 7E-15 2.4E-19 136.0 17.3 130 450-579 24-169 (198)
27 3q49_B STIP1 homology and U bo 99.6 4.1E-15 1.4E-19 128.3 14.4 119 460-578 5-128 (137)
28 2pl2_A Hypothetical conserved 99.6 6.2E-15 2.1E-19 138.6 16.6 131 447-578 22-163 (217)
29 1elw_A TPR1-domain of HOP; HOP 99.6 1.5E-14 5.2E-19 120.5 17.2 115 463-577 3-117 (118)
30 1hxi_A PEX5, peroxisome target 99.6 3.3E-15 1.1E-19 126.5 12.9 103 465-567 18-120 (121)
31 3urz_A Uncharacterized protein 99.6 6.4E-15 2.2E-19 137.6 15.0 114 463-576 3-132 (208)
32 2vyi_A SGTA protein; chaperone 99.6 3.1E-14 1.1E-18 120.9 18.0 122 458-579 6-127 (131)
33 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 7.8E-15 2.7E-19 154.2 16.4 126 454-579 258-398 (457)
34 2lni_A Stress-induced-phosphop 99.6 1E-14 3.6E-19 124.5 14.2 120 459-578 11-130 (133)
35 3urz_A Uncharacterized protein 99.6 2.2E-14 7.4E-19 133.9 17.4 132 444-576 18-200 (208)
36 2dba_A Smooth muscle cell asso 99.6 1.7E-14 5.7E-19 125.9 15.5 120 459-578 23-145 (148)
37 4ga2_A E3 SUMO-protein ligase 99.6 1.2E-15 4.2E-20 134.5 8.2 109 470-578 3-111 (150)
38 2h6f_A Protein farnesyltransfe 99.6 1.8E-14 6.3E-19 147.1 15.5 124 456-579 89-213 (382)
39 3vtx_A MAMA; tetratricopeptide 99.6 1E-13 3.4E-18 126.2 18.9 131 448-578 23-153 (184)
40 1zu2_A Mitochondrial import re 99.6 7.4E-15 2.5E-19 127.8 10.6 104 475-578 13-137 (158)
41 2xev_A YBGF; tetratricopeptide 99.6 4.4E-14 1.5E-18 120.3 15.3 113 466-578 4-122 (129)
42 1a17_A Serine/threonine protei 99.6 1.7E-13 5.8E-18 121.9 17.9 115 461-575 10-124 (166)
43 1elr_A TPR2A-domain of HOP; HO 99.5 1.1E-13 3.8E-18 117.5 15.6 117 462-579 2-125 (131)
44 4i17_A Hypothetical protein; T 99.5 6.6E-14 2.3E-18 132.3 15.5 129 449-577 26-164 (228)
45 1ihg_A Cyclophilin 40; ppiase 99.5 5.3E-14 1.8E-18 143.4 15.4 119 461-579 220-354 (370)
46 3vtx_A MAMA; tetratricopeptide 99.5 2E-13 6.7E-18 124.3 17.5 117 462-578 3-119 (184)
47 1na0_A Designed protein CTPR3; 99.5 3.7E-13 1.3E-17 113.1 17.9 116 463-578 8-123 (125)
48 4i17_A Hypothetical protein; T 99.5 4.9E-14 1.7E-18 133.2 13.1 127 453-579 65-227 (228)
49 2e2e_A Formate-dependent nitri 99.5 7E-14 2.4E-18 126.6 12.9 119 459-577 39-160 (177)
50 2if4_A ATFKBP42; FKBP-like, al 99.5 2.1E-14 7.2E-19 144.7 8.9 124 454-577 169-309 (338)
51 2kck_A TPR repeat; tetratricop 99.5 1E-13 3.4E-18 114.3 10.6 106 461-566 3-111 (112)
52 3k9i_A BH0479 protein; putativ 99.5 4.5E-14 1.5E-18 118.6 8.1 101 476-576 2-105 (117)
53 3as5_A MAMA; tetratricopeptide 99.5 3.1E-12 1E-16 115.5 20.1 133 446-578 24-156 (186)
54 2c2l_A CHIP, carboxy terminus 99.5 2.9E-13 9.9E-18 132.6 13.6 104 462-565 2-105 (281)
55 2pzi_A Probable serine/threoni 99.5 1.1E-13 3.6E-18 152.9 11.1 128 448-576 451-578 (681)
56 3gyz_A Chaperone protein IPGC; 99.5 5.1E-14 1.7E-18 123.9 6.5 98 482-579 20-117 (151)
57 2vsy_A XCC0866; transferase, g 99.5 7.4E-13 2.5E-17 143.3 16.9 123 456-578 15-137 (568)
58 4abn_A Tetratricopeptide repea 99.5 5.6E-13 1.9E-17 140.8 15.0 125 453-578 160-304 (474)
59 3uq3_A Heat shock protein STI1 99.4 1.2E-12 4.1E-17 125.3 16.0 117 459-575 134-256 (258)
60 2q7f_A YRRB protein; TPR, prot 99.4 2.6E-12 8.9E-17 121.8 16.7 131 448-578 75-205 (243)
61 2pzi_A Probable serine/threoni 99.4 2.3E-13 7.9E-18 150.2 10.6 120 458-578 427-546 (681)
62 1wao_1 Serine/threonine protei 99.4 2.1E-13 7.2E-18 143.9 9.9 116 461-576 3-118 (477)
63 1xnf_A Lipoprotein NLPI; TPR, 99.4 4E-12 1.4E-16 123.0 17.1 114 460-573 39-152 (275)
64 1w3b_A UDP-N-acetylglucosamine 99.4 2E-12 6.8E-17 132.5 15.6 127 453-579 260-386 (388)
65 2q7f_A YRRB protein; TPR, prot 99.4 6.2E-12 2.1E-16 119.2 17.3 126 452-577 113-238 (243)
66 1hh8_A P67PHOX, NCF-2, neutrop 99.4 7.7E-12 2.6E-16 116.4 17.6 104 463-566 36-155 (213)
67 2fo7_A Synthetic consensus TPR 99.4 1E-11 3.4E-16 105.5 16.7 111 454-564 25-135 (136)
68 3qky_A Outer membrane assembly 99.4 2.8E-12 9.5E-17 123.8 14.6 148 427-577 15-196 (261)
69 4abn_A Tetratricopeptide repea 99.4 3.2E-12 1.1E-16 134.9 16.2 118 460-578 98-225 (474)
70 1fch_A Peroxisomal targeting s 99.4 5E-12 1.7E-16 128.0 16.3 120 460-579 211-343 (368)
71 3uq3_A Heat shock protein STI1 99.4 7.8E-12 2.7E-16 119.5 16.5 115 464-578 79-219 (258)
72 4eqf_A PEX5-related protein; a 99.4 2.6E-12 8.7E-17 130.4 13.5 116 463-578 212-339 (365)
73 4gco_A Protein STI-1; structur 99.4 2.2E-12 7.6E-17 109.8 10.8 99 444-542 27-125 (126)
74 2vq2_A PILW, putative fimbrial 99.4 1.7E-11 5.9E-16 114.4 17.7 114 462-575 40-156 (225)
75 1hh8_A P67PHOX, NCF-2, neutrop 99.4 8.4E-12 2.9E-16 116.1 15.4 114 462-578 4-133 (213)
76 4eqf_A PEX5-related protein; a 99.4 9.6E-12 3.3E-16 126.1 17.0 123 455-577 124-292 (365)
77 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-11 3.8E-16 118.4 16.5 115 461-575 68-184 (252)
78 2fo7_A Synthetic consensus TPR 99.4 1.3E-11 4.6E-16 104.7 15.2 113 465-577 2-114 (136)
79 1w3b_A UDP-N-acetylglucosamine 99.4 8.5E-12 2.9E-16 127.8 16.3 122 456-577 229-350 (388)
80 3qky_A Outer membrane assembly 99.4 4.7E-12 1.6E-16 122.2 13.6 112 460-571 11-136 (261)
81 2r5s_A Uncharacterized protein 99.4 5.3E-12 1.8E-16 114.1 12.9 134 444-578 20-156 (176)
82 3hym_B Cell division cycle pro 99.4 8.8E-12 3E-16 123.9 15.4 126 452-577 181-315 (330)
83 2ho1_A Type 4 fimbrial biogene 99.3 1.9E-11 6.4E-16 116.9 16.8 114 462-575 103-218 (252)
84 3u4t_A TPR repeat-containing p 99.3 1.4E-11 4.7E-16 119.2 15.8 116 463-578 73-188 (272)
85 2vq2_A PILW, putative fimbrial 99.3 2.4E-11 8.3E-16 113.4 16.8 120 459-578 3-125 (225)
86 3as5_A MAMA; tetratricopeptide 99.3 1.5E-11 5.2E-16 110.8 14.9 118 461-578 5-122 (186)
87 3u4t_A TPR repeat-containing p 99.3 2.7E-12 9.2E-17 124.2 10.5 122 454-576 27-153 (272)
88 2l6j_A TPR repeat-containing p 99.3 8E-13 2.7E-17 109.1 5.7 95 463-557 3-103 (111)
89 3qou_A Protein YBBN; thioredox 99.3 3.5E-12 1.2E-16 125.2 11.2 124 456-579 143-268 (287)
90 2vgx_A Chaperone SYCD; alterna 99.3 2E-12 6.7E-17 113.5 8.2 97 482-578 5-101 (148)
91 3cv0_A Peroxisome targeting si 99.3 1.8E-11 6.2E-16 121.4 16.0 118 461-578 169-298 (327)
92 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.8E-11 6.1E-16 115.5 15.1 116 463-578 40-196 (225)
93 3hym_B Cell division cycle pro 99.3 2.3E-11 7.9E-16 120.8 16.5 122 457-578 83-205 (330)
94 2vsy_A XCC0866; transferase, g 99.3 1.5E-11 5.2E-16 132.9 15.6 126 446-571 39-167 (568)
95 3mkr_A Coatomer subunit epsilo 99.3 4.2E-11 1.5E-15 117.7 17.4 99 475-573 177-276 (291)
96 3ieg_A DNAJ homolog subfamily 99.3 5.8E-11 2E-15 119.2 18.8 113 467-579 237-353 (359)
97 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.6E-11 5.4E-16 115.8 13.6 111 463-573 3-137 (225)
98 2kat_A Uncharacterized protein 99.3 2.3E-11 8E-16 101.3 13.0 94 482-575 3-98 (115)
99 3mkr_A Coatomer subunit epsilo 99.3 4E-11 1.4E-15 117.9 16.3 118 461-578 127-246 (291)
100 2y4t_A DNAJ homolog subfamily 99.3 4E-11 1.4E-15 125.0 16.8 121 455-575 17-140 (450)
101 3ieg_A DNAJ homolog subfamily 99.3 5.6E-11 1.9E-15 119.3 16.5 120 457-576 64-198 (359)
102 1fch_A Peroxisomal targeting s 99.3 1.2E-10 4.2E-15 117.7 18.2 124 454-577 122-296 (368)
103 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.1E-10 3.8E-15 112.7 16.9 117 451-567 64-250 (275)
104 2y4t_A DNAJ homolog subfamily 99.3 9.2E-11 3.2E-15 122.3 17.5 111 468-578 261-375 (450)
105 1a17_A Serine/threonine protei 99.3 8.4E-11 2.9E-15 104.2 14.6 113 449-561 32-146 (166)
106 2e2e_A Formate-dependent nitri 99.3 1.4E-11 4.8E-16 111.2 9.5 107 472-578 18-127 (177)
107 1na3_A Designed protein CTPR2; 99.3 8.3E-11 2.8E-15 92.9 12.8 85 462-546 7-91 (91)
108 2xcb_A PCRH, regulatory protei 99.2 1.4E-11 4.9E-16 107.0 8.7 94 485-578 5-98 (142)
109 1p5q_A FKBP52, FK506-binding p 99.2 7.8E-11 2.7E-15 118.4 15.0 98 464-561 196-294 (336)
110 2xpi_A Anaphase-promoting comp 99.2 1.1E-10 3.7E-15 126.6 17.1 123 455-577 466-595 (597)
111 3qou_A Protein YBBN; thioredox 99.2 3.8E-11 1.3E-15 117.8 11.9 118 461-578 114-231 (287)
112 1zu2_A Mitochondrial import re 99.2 1.9E-11 6.6E-16 106.2 8.1 76 457-532 29-125 (158)
113 1qqe_A Vesicular transport pro 99.2 1.1E-10 3.6E-15 114.9 14.0 116 461-576 74-209 (292)
114 2kc7_A BFR218_protein; tetratr 99.2 3.1E-11 1.1E-15 97.4 7.6 92 467-566 3-95 (99)
115 3dra_A Protein farnesyltransfe 99.2 3E-10 1E-14 111.6 15.9 130 449-578 52-192 (306)
116 2r5s_A Uncharacterized protein 99.2 2.5E-11 8.5E-16 109.7 7.6 116 462-578 4-120 (176)
117 1dce_A Protein (RAB geranylger 99.2 2.2E-10 7.5E-15 123.0 15.8 128 451-578 50-190 (567)
118 1qqe_A Vesicular transport pro 99.2 2E-10 6.8E-15 112.9 13.8 107 462-568 115-235 (292)
119 3fp2_A TPR repeat-containing p 99.2 2.1E-10 7.3E-15 122.4 15.1 122 456-578 269-390 (537)
120 3ma5_A Tetratricopeptide repea 99.2 1.8E-10 6E-15 93.4 10.9 83 493-575 2-86 (100)
121 2ond_A Cleavage stimulation fa 99.2 3.2E-10 1.1E-14 112.3 14.7 111 466-576 136-251 (308)
122 3cv0_A Peroxisome targeting si 99.2 1.6E-10 5.6E-15 114.5 12.4 108 471-578 144-252 (327)
123 2xpi_A Anaphase-promoting comp 99.2 5.6E-10 1.9E-14 120.9 17.7 120 458-577 367-486 (597)
124 2gw1_A Mitochondrial precursor 99.2 3.3E-10 1.1E-14 119.9 15.4 106 461-567 3-108 (514)
125 1na3_A Designed protein CTPR2; 99.1 3.6E-10 1.2E-14 89.2 11.6 84 496-579 7-90 (91)
126 3sz7_A HSC70 cochaperone (SGT) 99.1 2.4E-10 8.1E-15 101.8 11.7 101 444-544 25-125 (164)
127 3upv_A Heat shock protein STI1 99.1 4.7E-10 1.6E-14 94.9 12.6 101 445-545 19-125 (126)
128 3edt_B KLC 2, kinesin light ch 99.1 3.5E-10 1.2E-14 109.3 13.2 119 460-578 39-181 (283)
129 1wao_1 Serine/threonine protei 99.1 3.5E-11 1.2E-15 126.8 6.4 106 460-565 36-154 (477)
130 2ond_A Cleavage stimulation fa 99.1 3.3E-10 1.1E-14 112.2 13.0 131 448-578 82-215 (308)
131 2vyi_A SGTA protein; chaperone 99.1 5.6E-10 1.9E-14 94.1 12.6 97 452-548 34-130 (131)
132 2lni_A Stress-induced-phosphop 99.1 3.8E-10 1.3E-14 95.7 11.6 99 449-547 35-133 (133)
133 4g1t_A Interferon-induced prot 99.1 7.1E-10 2.4E-14 116.4 15.8 113 463-575 50-181 (472)
134 4f3v_A ESX-1 secretion system 99.1 7.2E-10 2.5E-14 106.5 14.3 127 446-574 118-249 (282)
135 4gcn_A Protein STI-1; structur 99.1 3.1E-10 1E-14 96.5 10.4 81 497-577 7-94 (127)
136 3q7a_A Farnesyltransferase alp 99.1 7.2E-10 2.5E-14 110.0 14.3 129 450-578 74-213 (349)
137 3dra_A Protein farnesyltransfe 99.1 5.6E-10 1.9E-14 109.6 13.1 121 459-579 98-233 (306)
138 3dss_A Geranylgeranyl transfer 99.1 2E-09 6.7E-14 106.4 17.0 125 454-578 54-191 (331)
139 2l6j_A TPR repeat-containing p 99.1 6.7E-10 2.3E-14 91.2 11.5 82 497-578 3-90 (111)
140 3fp2_A TPR repeat-containing p 99.1 1.6E-09 5.4E-14 115.5 17.5 115 463-578 242-356 (537)
141 1ouv_A Conserved hypothetical 99.1 2.2E-09 7.5E-14 104.0 17.0 111 461-577 35-157 (273)
142 1dce_A Protein (RAB geranylger 99.1 3.9E-10 1.3E-14 121.0 12.7 122 457-578 100-238 (567)
143 3k9i_A BH0479 protein; putativ 99.1 2.7E-10 9.1E-15 95.2 9.0 83 460-542 23-105 (117)
144 4g1t_A Interferon-induced prot 99.1 9.5E-10 3.2E-14 115.4 15.4 117 459-575 89-218 (472)
145 3rkv_A Putative peptidylprolyl 99.1 4.8E-10 1.6E-14 99.5 10.9 90 460-549 59-149 (162)
146 2fbn_A 70 kDa peptidylprolyl i 99.1 5.4E-10 1.8E-14 102.8 11.6 97 464-560 88-185 (198)
147 2gw1_A Mitochondrial precursor 99.1 3.2E-10 1.1E-14 120.1 11.3 118 459-576 367-493 (514)
148 1pc2_A Mitochondria fission pr 99.1 1E-09 3.5E-14 94.2 12.0 102 478-579 12-118 (152)
149 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 5.3E-10 1.8E-14 117.2 12.3 92 463-554 316-407 (457)
150 3edt_B KLC 2, kinesin light ch 99.1 6.1E-10 2.1E-14 107.6 11.6 102 460-561 81-198 (283)
151 2c2l_A CHIP, carboxy terminus 99.1 2.1E-10 7.1E-15 112.2 8.2 128 447-576 21-179 (281)
152 1hxi_A PEX5, peroxisome target 99.1 1.3E-09 4.5E-14 91.7 12.1 80 499-578 18-97 (121)
153 2if4_A ATFKBP42; FKBP-like, al 99.1 9.5E-11 3.3E-15 117.8 5.8 103 465-567 231-334 (338)
154 3dss_A Geranylgeranyl transfer 99.1 2.4E-09 8.1E-14 105.8 15.6 120 457-576 101-237 (331)
155 1ouv_A Conserved hypothetical 99.1 4.4E-09 1.5E-13 101.8 17.2 110 463-578 73-194 (273)
156 1ihg_A Cyclophilin 40; ppiase 99.0 1.3E-09 4.4E-14 110.9 13.6 96 459-554 268-363 (370)
157 3q49_B STIP1 homology and U bo 99.0 2.4E-09 8.3E-14 91.5 13.0 87 492-578 3-89 (137)
158 2kck_A TPR repeat; tetratricop 99.0 8.8E-10 3E-14 90.2 9.4 86 493-578 1-88 (112)
159 3nf1_A KLC 1, kinesin light ch 99.0 1.3E-09 4.4E-14 107.1 12.2 119 459-577 64-206 (311)
160 2hr2_A Hypothetical protein; a 99.0 1.5E-09 5.3E-14 94.4 11.1 82 498-579 11-115 (159)
161 3rjv_A Putative SEL1 repeat pr 99.0 2E-09 6.7E-14 100.4 12.2 112 462-577 48-173 (212)
162 3ulq_A Response regulator aspa 99.0 2.1E-09 7E-14 109.8 13.3 104 460-563 180-295 (383)
163 2qfc_A PLCR protein; TPR, HTH, 99.0 7.5E-09 2.6E-13 101.5 16.8 117 462-578 113-248 (293)
164 1na0_A Designed protein CTPR3; 99.0 5.2E-09 1.8E-13 87.2 13.4 90 457-546 36-125 (125)
165 3ma5_A Tetratricopeptide repea 99.0 1.4E-09 4.8E-14 88.0 9.4 85 460-544 3-89 (100)
166 4a1s_A PINS, partner of inscut 99.0 1.9E-09 6.7E-14 110.8 12.6 118 460-577 44-177 (411)
167 3ro3_A PINS homolog, G-protein 99.0 1.9E-09 6.4E-14 94.5 10.6 100 465-564 50-161 (164)
168 3u3w_A Transcriptional activat 99.0 1.6E-09 5.6E-14 106.3 11.2 115 464-578 115-248 (293)
169 3q7a_A Farnesyltransferase alp 99.0 1.7E-09 5.9E-14 107.3 11.1 121 458-578 117-254 (349)
170 3nf1_A KLC 1, kinesin light ch 99.0 2.1E-09 7.3E-14 105.5 11.4 124 454-577 17-164 (311)
171 1elw_A TPR1-domain of HOP; HOP 99.0 6.9E-09 2.3E-13 85.5 12.8 90 453-542 27-116 (118)
172 3rjv_A Putative SEL1 repeat pr 98.9 3.5E-09 1.2E-13 98.6 11.2 111 462-577 16-136 (212)
173 3ulq_A Response regulator aspa 98.9 6.5E-09 2.2E-13 106.1 13.8 117 460-577 220-350 (383)
174 2kc7_A BFR218_protein; tetratr 98.9 6.2E-09 2.1E-13 83.6 10.9 77 501-577 3-82 (99)
175 2ifu_A Gamma-SNAP; membrane fu 98.9 3.6E-09 1.2E-13 104.7 11.4 105 462-568 114-230 (307)
176 3ro3_A PINS homolog, G-protein 98.9 7.4E-09 2.5E-13 90.5 12.3 115 462-576 7-139 (164)
177 3u3w_A Transcriptional activat 98.9 5.6E-09 1.9E-13 102.4 12.7 101 462-562 153-267 (293)
178 2qfc_A PLCR protein; TPR, HTH, 98.9 1.2E-08 4.2E-13 100.0 14.4 101 462-562 153-267 (293)
179 2ifu_A Gamma-SNAP; membrane fu 98.9 3.9E-09 1.3E-13 104.4 10.8 98 465-563 77-186 (307)
180 2dba_A Smooth muscle cell asso 98.9 8.5E-09 2.9E-13 89.1 11.3 80 464-543 65-144 (148)
181 3ro2_A PINS homolog, G-protein 98.9 6.7E-09 2.3E-13 102.7 12.0 114 463-576 4-133 (338)
182 2xev_A YBGF; tetratricopeptide 98.9 1.4E-08 4.7E-13 85.7 12.1 84 464-547 39-125 (129)
183 2kat_A Uncharacterized protein 98.9 5E-09 1.7E-13 86.9 9.0 88 459-546 14-103 (115)
184 3gw4_A Uncharacterized protein 98.9 4.4E-09 1.5E-13 96.4 9.4 98 464-561 26-136 (203)
185 3sf4_A G-protein-signaling mod 98.9 1.1E-08 3.8E-13 104.5 13.2 104 461-564 184-299 (406)
186 3bee_A Putative YFRE protein; 98.9 1.3E-08 4.6E-13 80.7 10.7 76 494-569 2-80 (93)
187 3q15_A PSP28, response regulat 98.9 2.1E-08 7.3E-13 102.1 14.7 104 461-564 179-293 (378)
188 3q15_A PSP28, response regulat 98.9 1.2E-08 4.1E-13 104.0 12.5 119 460-578 137-273 (378)
189 1klx_A Cysteine rich protein B 98.9 3E-08 1E-12 85.4 13.0 99 470-574 31-137 (138)
190 3sf4_A G-protein-signaling mod 98.8 8.8E-09 3E-13 105.2 10.9 115 462-576 7-137 (406)
191 4a1s_A PINS, partner of inscut 98.8 7.3E-09 2.5E-13 106.4 10.3 116 461-576 220-353 (411)
192 2ooe_A Cleavage stimulation fa 98.8 4.7E-08 1.6E-12 104.4 15.1 125 453-577 309-436 (530)
193 3gw4_A Uncharacterized protein 98.8 2.8E-08 9.6E-13 91.0 11.1 105 459-563 61-178 (203)
194 3ro2_A PINS homolog, G-protein 98.8 3E-08 1E-12 97.9 11.8 116 461-576 180-313 (338)
195 3n71_A Histone lysine methyltr 98.8 5.4E-08 1.8E-12 102.0 13.5 112 464-575 309-441 (490)
196 2v5f_A Prolyl 4-hydroxylase su 98.8 8.8E-08 3E-12 77.9 12.0 76 464-539 5-87 (104)
197 1elr_A TPR2A-domain of HOP; HO 98.7 3.6E-08 1.2E-12 82.8 9.6 92 454-546 28-126 (131)
198 3qww_A SET and MYND domain-con 98.7 6.5E-08 2.2E-12 99.7 12.7 107 470-576 304-431 (433)
199 4f3v_A ESX-1 secretion system 98.7 3.5E-08 1.2E-12 94.7 8.7 114 464-578 102-220 (282)
200 2ooe_A Cleavage stimulation fa 98.7 8.7E-08 3E-12 102.4 12.6 121 455-575 263-399 (530)
201 2v5f_A Prolyl 4-hydroxylase su 98.7 1.7E-07 5.7E-12 76.3 11.2 81 498-578 5-92 (104)
202 1nzn_A CGI-135 protein, fissio 98.7 3.3E-07 1.1E-11 75.7 12.4 104 476-579 13-121 (126)
203 3qwp_A SET and MYND domain-con 98.6 1.9E-07 6.5E-12 96.4 13.3 113 464-576 287-420 (429)
204 3e4b_A ALGK; tetratricopeptide 98.6 2E-07 7E-12 97.4 12.3 103 464-575 213-327 (452)
205 3n71_A Histone lysine methyltr 98.6 1.9E-07 6.6E-12 97.8 11.2 109 458-566 345-469 (490)
206 3bee_A Putative YFRE protein; 98.5 3E-07 1E-11 72.8 8.8 72 460-531 2-76 (93)
207 1hz4_A MALT regulatory protein 98.5 4.4E-07 1.5E-11 91.8 12.2 101 464-564 93-206 (373)
208 2xm6_A Protein corresponding t 98.5 5.3E-07 1.8E-11 95.2 13.0 109 463-575 327-449 (490)
209 1hz4_A MALT regulatory protein 98.5 1.2E-06 4.2E-11 88.5 14.6 101 464-564 53-167 (373)
210 3e4b_A ALGK; tetratricopeptide 98.5 7.4E-07 2.5E-11 93.1 13.0 108 465-577 177-294 (452)
211 2xm6_A Protein corresponding t 98.5 2.1E-06 7.1E-11 90.6 16.5 111 462-578 73-195 (490)
212 1pc2_A Mitochondria fission pr 98.5 4.7E-07 1.6E-11 77.7 8.8 81 462-542 30-115 (152)
213 3u64_A Protein TP_0956; tetrat 98.4 1E-06 3.6E-11 83.6 11.2 104 461-564 149-272 (301)
214 1klx_A Cysteine rich protein B 98.4 1.7E-06 5.7E-11 74.3 11.4 93 477-577 8-104 (138)
215 3ly7_A Transcriptional activat 98.4 2.4E-06 8.2E-11 84.6 12.7 118 448-566 217-344 (372)
216 3mv2_B Coatomer subunit epsilo 98.3 4.6E-06 1.6E-10 81.1 12.9 96 471-571 183-292 (310)
217 3mv2_B Coatomer subunit epsilo 98.2 1.5E-05 5E-10 77.5 13.9 111 462-575 134-264 (310)
218 3o48_A Mitochondria fission 1 98.2 1.9E-05 6.4E-10 65.3 11.7 83 497-579 39-125 (134)
219 1y8m_A FIS1; mitochondria, unk 98.2 4.4E-05 1.5E-09 63.9 13.9 85 495-579 36-124 (144)
220 1xi4_A Clathrin heavy chain; a 98.1 2.4E-05 8.1E-10 89.1 14.3 78 500-577 1223-1325(1630)
221 3ly7_A Transcriptional activat 98.1 3.1E-05 1E-09 76.7 13.1 115 463-578 195-322 (372)
222 1xi4_A Clathrin heavy chain; a 98.0 3.3E-05 1.1E-09 88.0 14.0 93 461-558 1102-1221(1630)
223 1nzn_A CGI-135 protein, fissio 97.9 4.9E-05 1.7E-09 62.7 9.5 81 462-542 33-118 (126)
224 1b89_A Protein (clathrin heavy 97.9 0.00011 3.9E-09 74.6 13.4 105 465-578 149-253 (449)
225 3qwp_A SET and MYND domain-con 97.9 4.1E-05 1.4E-09 78.9 10.4 89 457-545 322-426 (429)
226 3ffl_A Anaphase-promoting comp 97.9 0.00011 3.9E-09 63.3 10.9 111 466-577 22-166 (167)
227 4b4t_Q 26S proteasome regulato 97.8 6.7E-05 2.3E-09 77.2 11.0 101 463-563 94-206 (434)
228 3qww_A SET and MYND domain-con 97.8 6.6E-05 2.3E-09 77.2 10.6 77 458-534 334-423 (433)
229 3u64_A Protein TP_0956; tetrat 97.7 0.0002 6.9E-09 68.0 11.5 115 461-575 103-248 (301)
230 4b4t_Q 26S proteasome regulato 97.7 0.00015 5E-09 74.6 11.6 100 462-561 53-164 (434)
231 1b89_A Protein (clathrin heavy 97.6 4.6E-05 1.6E-09 77.5 4.5 87 465-565 123-209 (449)
232 3o48_A Mitochondria fission 1 97.4 0.0012 4.3E-08 54.4 10.9 81 463-543 39-123 (134)
233 1y8m_A FIS1; mitochondria, unk 97.4 0.0016 5.6E-08 54.4 11.4 80 463-542 38-121 (144)
234 4h7y_A Dual specificity protei 97.4 0.002 6.8E-08 54.3 11.3 111 459-570 8-132 (161)
235 4e6h_A MRNA 3'-END-processing 97.3 0.00097 3.3E-08 72.6 11.0 116 459-574 373-512 (679)
236 4e6h_A MRNA 3'-END-processing 97.1 0.0027 9.4E-08 69.0 12.8 115 463-577 433-552 (679)
237 3ffl_A Anaphase-promoting comp 96.9 0.008 2.7E-07 51.8 10.8 80 462-542 61-165 (167)
238 2ff4_A Probable regulatory pro 96.4 0.042 1.4E-06 55.4 14.5 62 499-560 172-233 (388)
239 2uy1_A Cleavage stimulation fa 96.3 0.031 1.1E-06 58.5 13.2 114 459-574 208-362 (493)
240 3kae_A CDC27, possible protein 96.3 0.072 2.5E-06 45.6 12.5 101 465-570 34-152 (242)
241 1zbp_A Hypothetical protein VP 95.9 0.1 3.4E-06 48.8 12.5 94 472-565 5-133 (273)
242 1ya0_A SMG-7 transcript varian 95.4 0.077 2.6E-06 55.1 11.1 81 465-545 153-233 (497)
243 2uy1_A Cleavage stimulation fa 95.2 0.26 9E-06 51.3 14.5 108 463-575 285-393 (493)
244 4gns_B Protein CSD3, chitin bi 95.1 0.05 1.7E-06 59.2 8.8 59 500-558 339-397 (754)
245 1ya0_A SMG-7 transcript varian 95.0 0.12 4.1E-06 53.6 11.1 78 500-577 154-231 (497)
246 4g26_A Pentatricopeptide repea 95.0 0.38 1.3E-05 50.2 14.9 104 463-566 104-211 (501)
247 4gns_B Protein CSD3, chitin bi 94.8 0.085 2.9E-06 57.4 9.7 62 463-524 336-397 (754)
248 4h7y_A Dual specificity protei 94.4 0.57 1.9E-05 39.5 11.5 87 459-547 56-142 (161)
249 1zbp_A Hypothetical protein VP 93.4 0.33 1.1E-05 45.3 9.1 66 507-572 6-71 (273)
250 3kae_A CDC27, possible protein 93.3 2.2 7.4E-05 36.6 13.1 103 462-564 60-240 (242)
251 3txn_A 26S proteasome regulato 92.2 1.1 3.9E-05 44.7 11.9 95 468-562 103-211 (394)
252 4b4t_R RPN7, 26S proteasome re 91.8 1 3.5E-05 45.8 11.5 99 465-563 132-239 (429)
253 2ff4_A Probable regulatory pro 91.7 0.59 2E-05 46.9 9.4 62 465-526 172-233 (388)
254 4b4t_S RPN3, 26S proteasome re 90.7 0.28 9.4E-06 50.6 5.7 104 462-567 179-305 (523)
255 4b4t_P 26S proteasome regulato 90.4 4.7 0.00016 41.1 14.8 101 461-561 134-247 (445)
256 4g26_A Pentatricopeptide repea 90.2 3.2 0.00011 43.1 13.6 84 478-561 84-169 (501)
257 3mkq_A Coatomer beta'-subunit; 89.0 1.6 5.5E-05 48.1 10.9 47 473-524 661-707 (814)
258 3mkq_B Coatomer subunit alpha; 88.5 3.5 0.00012 35.9 10.2 82 464-558 34-115 (177)
259 3mkq_B Coatomer subunit alpha; 88.2 3.9 0.00013 35.6 10.3 80 471-555 12-99 (177)
260 3spa_A Mtrpol, DNA-directed RN 86.7 11 0.00037 42.3 15.0 99 462-561 125-230 (1134)
261 3mkq_A Coatomer beta'-subunit; 86.5 5.9 0.0002 43.5 13.5 59 463-521 680-746 (814)
262 1qsa_A Protein (soluble lytic 80.0 14 0.00048 39.3 12.4 94 466-560 254-347 (618)
263 4fhn_B Nucleoporin NUP120; pro 80.0 5.2 0.00018 46.2 9.8 92 466-557 844-963 (1139)
264 4b4t_S RPN3, 26S proteasome re 76.4 3.8 0.00013 42.2 6.3 69 461-531 228-303 (523)
265 4gq2_M Nucleoporin NUP120; bet 76.3 13 0.00044 42.0 11.3 97 470-570 816-936 (950)
266 3txn_A 26S proteasome regulato 72.0 38 0.0013 33.6 12.3 61 502-562 103-169 (394)
267 4fhn_B Nucleoporin NUP120; pro 71.6 13 0.00046 42.8 10.2 94 470-567 818-935 (1139)
268 1wy6_A Hypothetical protein ST 71.5 39 0.0013 28.0 9.8 81 477-562 74-155 (172)
269 4b4t_R RPN7, 26S proteasome re 69.9 8.7 0.0003 38.9 7.3 65 497-561 130-197 (429)
270 1wy6_A Hypothetical protein ST 67.9 22 0.00076 29.4 7.6 55 474-528 101-155 (172)
271 2ijq_A Hypothetical protein; s 65.9 36 0.0012 28.9 9.1 62 466-527 34-104 (161)
272 3t5v_B Nuclear mRNA export pro 62.4 13 0.00044 37.8 6.7 61 470-530 182-253 (455)
273 3ax2_A Mitochondrial import re 61.4 20 0.00069 25.9 5.7 33 468-500 21-53 (73)
274 3ax2_A Mitochondrial import re 61.2 23 0.00077 25.6 5.9 33 538-570 23-55 (73)
275 2w2u_A Hypothetical P60 katani 60.7 43 0.0015 24.9 7.7 32 462-493 17-48 (83)
276 3lpz_A GET4 (YOR164C homolog); 59.9 1.3E+02 0.0043 29.0 13.8 26 530-555 134-159 (336)
277 3t5x_A PCI domain-containing p 59.8 18 0.00062 32.2 6.5 82 461-550 11-97 (203)
278 3t5v_B Nuclear mRNA export pro 58.9 44 0.0015 33.8 9.9 36 462-497 218-254 (455)
279 3t5x_A PCI domain-containing p 58.8 20 0.00069 31.9 6.7 33 499-531 15-47 (203)
280 2ijq_A Hypothetical protein; s 58.4 45 0.0016 28.3 8.4 61 501-561 35-104 (161)
281 2wpv_A GET4, UPF0363 protein Y 58.1 1.3E+02 0.0044 28.6 13.9 94 463-556 52-158 (312)
282 2crb_A Nuclear receptor bindin 57.7 19 0.00064 27.2 5.0 30 463-492 14-43 (97)
283 2v6y_A AAA family ATPase, P60 56.8 55 0.0019 24.2 7.7 30 463-492 10-39 (83)
284 4a5x_A MITD1, MIT domain-conta 52.6 21 0.00072 26.8 4.8 31 462-492 14-44 (86)
285 2cfu_A SDSA1; SDS-hydrolase, l 51.6 23 0.00078 38.0 6.8 49 465-513 450-498 (658)
286 2crb_A Nuclear receptor bindin 50.2 26 0.00087 26.5 4.7 25 500-524 17-41 (97)
287 1om2_A Protein (mitochondrial 49.7 25 0.00084 26.9 4.7 30 468-497 24-53 (95)
288 1qsa_A Protein (soluble lytic 49.6 2.5E+02 0.0084 29.6 14.3 89 473-561 294-410 (618)
289 3mkr_B Coatomer subunit alpha; 46.6 2E+02 0.0068 27.4 13.1 100 468-567 106-233 (320)
290 1wfd_A Hypothetical protein 15 45.6 33 0.0011 26.1 5.0 30 463-492 14-43 (93)
291 2v6x_A Vacuolar protein sortin 45.3 34 0.0012 25.4 5.0 31 462-492 11-41 (85)
292 2dl1_A Spartin; SPG20, MIT, st 44.2 11 0.00039 29.9 2.2 18 478-495 17-34 (116)
293 2w2u_A Hypothetical P60 katani 43.8 28 0.00094 25.9 4.2 13 515-527 17-29 (83)
294 2cpt_A SKD1 protein, vacuolar 43.6 32 0.0011 27.5 4.9 30 463-492 17-46 (117)
295 3mv2_A Coatomer subunit alpha; 42.7 2.3E+02 0.0079 27.0 14.5 103 468-570 118-245 (325)
296 2pmr_A Uncharacterized protein 42.6 83 0.0028 23.5 6.6 33 458-490 33-65 (87)
297 3esl_A Checkpoint serine/threo 42.4 1.8E+02 0.0061 25.6 10.0 70 459-529 75-146 (202)
298 2v6y_A AAA family ATPase, P60 41.3 31 0.0011 25.6 4.2 12 516-527 10-21 (83)
299 3spa_A Mtrpol, DNA-directed RN 40.3 1.7E+02 0.0057 33.1 11.3 67 498-565 127-200 (1134)
300 4b4t_P 26S proteasome regulato 40.2 2.3E+02 0.008 28.3 12.0 68 460-527 173-247 (445)
301 2cfu_A SDSA1; SDS-hydrolase, l 39.4 45 0.0015 35.7 6.7 50 498-547 449-498 (658)
302 3re2_A Predicted protein; meni 38.2 1.4E+02 0.0047 29.0 8.8 24 501-524 299-322 (472)
303 2cwy_A Hypothetical protein TT 38.0 74 0.0025 24.1 5.9 27 469-495 6-32 (94)
304 2ynq_A ESSB; membrane protein, 37.1 1.5E+02 0.0051 24.9 8.0 86 467-556 11-97 (161)
305 1om2_A Protein (mitochondrial 36.9 46 0.0016 25.4 4.5 32 502-533 24-55 (95)
306 4gq4_A Menin; tumor suppressor 36.2 1.9E+02 0.0066 28.5 9.7 63 462-524 260-329 (489)
307 2vkj_A TM1634; membrane protei 35.9 1.3E+02 0.0046 22.4 7.0 36 461-496 50-85 (106)
308 2rpa_A Katanin P60 ATPase-cont 35.3 46 0.0016 24.4 4.1 30 464-493 12-41 (78)
309 3u84_A Menin; MLL, JUND, ledgf 32.8 1.8E+02 0.006 28.8 8.7 28 532-559 318-345 (550)
310 4a5x_A MITD1, MIT domain-conta 32.7 64 0.0022 24.0 4.7 17 543-559 27-43 (86)
311 3myv_A SUSD superfamily protei 31.8 97 0.0033 31.3 7.5 30 497-526 189-218 (454)
312 4gq2_M Nucleoporin NUP120; bet 31.4 93 0.0032 34.9 7.9 53 503-559 815-867 (950)
313 1wfd_A Hypothetical protein 15 30.5 70 0.0024 24.2 4.7 13 515-527 13-25 (93)
314 3kez_A Putative sugar binding 29.5 1.1E+02 0.0036 31.0 7.4 30 497-526 195-224 (461)
315 2wpv_A GET4, UPF0363 protein Y 29.3 1E+02 0.0034 29.4 6.6 85 462-561 132-217 (312)
316 2v6x_A Vacuolar protein sortin 28.9 79 0.0027 23.3 4.7 16 544-559 25-40 (85)
317 2uwj_G Type III export protein 28.8 2E+02 0.0069 22.2 11.2 99 471-577 13-111 (115)
318 2p58_C Putative type III secre 28.7 2E+02 0.0069 22.2 11.6 101 470-578 13-113 (116)
319 2cwy_A Hypothetical protein TT 28.1 1.4E+02 0.0046 22.7 5.9 57 503-561 6-68 (94)
320 2cpt_A SKD1 protein, vacuolar 27.9 72 0.0025 25.4 4.5 12 515-526 16-27 (117)
321 3lew_A SUSD-like carbohydrate 27.7 1.2E+02 0.0042 30.9 7.6 32 497-528 202-233 (495)
322 2npu_A FKBP12-rapamycin comple 27.7 90 0.0031 25.2 5.0 55 470-527 46-103 (126)
323 2vkj_A TM1634; membrane protei 27.3 1.3E+02 0.0044 22.5 5.2 27 500-526 55-81 (106)
324 3mcx_A SUSD superfamily protei 26.7 1.2E+02 0.0039 30.9 7.1 31 497-527 201-231 (477)
325 4b4t_O 26S proteasome regulato 25.0 4.2E+02 0.014 25.9 10.6 88 473-560 85-197 (393)
326 2wvi_A Mitotic checkpoint seri 24.8 2.4E+02 0.0082 23.9 7.5 64 459-528 61-126 (164)
327 3re2_A Predicted protein; meni 24.8 3.7E+02 0.013 26.0 9.3 46 531-576 295-346 (472)
328 2yhe_A SEC-alkyl sulfatase; hy 30.3 16 0.00054 39.2 0.0 51 465-515 462-512 (668)
329 2p58_C Putative type III secre 24.0 1.3E+02 0.0044 23.3 4.9 53 466-523 42-94 (116)
330 2dl1_A Spartin; SPG20, MIT, st 23.2 55 0.0019 26.0 2.9 44 512-563 17-60 (116)
331 4aez_C MAD3, mitotic spindle c 22.7 3.8E+02 0.013 23.9 8.7 50 515-564 131-182 (223)
332 3myv_A SUSD superfamily protei 21.4 1.8E+02 0.0062 29.2 7.3 47 515-561 165-219 (454)
333 3lew_A SUSD-like carbohydrate 21.1 2E+02 0.007 29.2 7.7 33 530-562 201-233 (495)
334 2rpa_A Katanin P60 ATPase-cont 20.4 89 0.003 22.8 3.3 27 501-527 15-41 (78)
No 1
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=4.5e-88 Score=698.85 Aligned_cols=405 Identities=26% Similarity=0.331 Sum_probs=339.7
Q ss_pred HhhhhhhHHH-----HHHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCC
Q 008025 12 LGLGLAGILL-----MTKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEG 73 (580)
Q Consensus 12 ~~~~l~~~~~-----~~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g 73 (580)
++.+|+++++ +.|++ + +++|| +|||++..+++++++|+ +++..|||+||||+|||+|+++|
T Consensus 2 ~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G 80 (434)
T 2dc0_A 2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG 80 (434)
T ss_dssp CHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTT
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCC
Confidence 4667777744 44432 3 37899 99999998776555442 35668999999999999999999
Q ss_pred cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025 74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153 (580)
Q Consensus 74 ~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa 153 (580)
++||+||+.| . .++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||+.|+||||||||||+||+
T Consensus 81 ~~tt~Gs~~~-~--~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAa 157 (434)
T 2dc0_A 81 MPTRAGTKAP-L--PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVAL 157 (434)
T ss_dssp BCCCTTCSSC-C--CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHH
T ss_pred cccCCCCccc-C--CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHc
Confidence 9999999998 3 333899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCcccC--CCCc
Q 008025 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--RSPR 231 (580)
Q Consensus 154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~~--~~~~ 231 (580)
|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+. ..+. .++.
T Consensus 158 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~l 236 (434)
T 2dc0_A 158 GIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQNP 236 (434)
T ss_dssp TSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCSC
T ss_pred CCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998876 3332 3456
Q ss_pred eEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhh
Q 008025 232 QIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNH 309 (580)
Q Consensus 232 ~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (580)
||++..+.+ ....++++.++++++++.|+ |++|++ +++ | +.. ....+..+...|.+..+
T Consensus 237 rig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p-~~~-------~~~~~~~~~~~e~~~~~ 297 (434)
T 2dc0_A 237 VFGVPLDFL--EGRLGVEVRKAFTRLLEDLPALRAEVRE-VSL--------P-LEG-------VYEVYTRLVRYEAARIH 297 (434)
T ss_dssp EEEECHHHH--TTCSCHHHHHHHHHHHHHTTTTTCEEEE-CCC--------C-CTT-------HHHHHHHHHHHHHHHHS
T ss_pred EEEEECccc--cCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------C-cHH-------HHHHHHHHHHHHHHHHH
Confidence 777765543 22358899999999999986 666532 222 2 221 12223334455666667
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc----hHHH
Q 008025 310 NEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML----SEDY 385 (580)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~----~~~~ 385 (580)
..++......+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||++.++|+++..... ....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~ 377 (434)
T 2dc0_A 298 EKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGH 377 (434)
T ss_dssp HHHHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEH
T ss_pred HHHHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhh
Confidence 777777677899999999999999999999999999999999999999999999999999999999865311 0111
Q ss_pred HHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025 386 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (580)
Q Consensus 386 ~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~ 440 (580)
...+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.
T Consensus 378 ~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~ 432 (434)
T 2dc0_A 378 REAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR 432 (434)
T ss_dssp HHHHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence 2234569999999999999999998889999999999999999999999988753
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=2.4e-87 Score=703.90 Aligned_cols=412 Identities=22% Similarity=0.272 Sum_probs=332.8
Q ss_pred hHHHHhhhhhhHHHH-----HHHH----hh--hccCCccceeeccccCCCCCC--------CCCCCCCCCCCceeeeecc
Q 008025 8 LWVLLGLGLAGILLM-----TKKL----KK--NIKQDFGAFIEKLQLLPPPQP--------LPPKAPHPLTGLSFAVSDL 68 (580)
Q Consensus 8 ~~~~~~~~l~~~~~~-----~~~~----~~--~~~~~~~a~~~~~~~~~~~~~--------~~~~~~gpl~Gvp~~vKD~ 68 (580)
+..+|+++|+++++. .|++ +| ++||.+|||++..+++++++| +.++. ||||||||+|||+
T Consensus 3 l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~ 81 (485)
T 3ip4_A 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDN 81 (485)
T ss_dssp GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETT
T ss_pred cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcC
Confidence 556788999988554 4443 33 789999999999887655443 34556 9999999999999
Q ss_pred cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (580)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa 148 (580)
|+++|++||+||+.+.+ +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus 82 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsA 159 (485)
T 3ip4_A 82 IITNGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSA 159 (485)
T ss_dssp BCBTTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHH
T ss_pred cccCCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHH
Confidence 99999999999999987 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (580)
Q Consensus 149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-- 226 (580)
||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||+|+++|++.+++++.+.+..+
T Consensus 160 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~ 239 (485)
T 3ip4_A 160 AAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST 239 (485)
T ss_dssp HHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTT
T ss_pred HHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988654221
Q ss_pred ---------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhh
Q 008025 227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT 289 (580)
Q Consensus 227 ---------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~ 289 (580)
..++.||++..+.+. ...++++.++++++++.|+ |++|++ +++ |.+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~--- 305 (485)
T 3ip4_A 240 SAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VSL--------PNTKFG--- 305 (485)
T ss_dssp SCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH---
T ss_pred ccccCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH---
Confidence 124567777655432 2357899999999999986 777643 222 222111
Q ss_pred hhhHHHHHHHHHHHHHhhhh-------------------HHHHHhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHH
Q 008025 290 NGELKNVMRLIQRYEFKNNH-------------------NEWIESVKPALDPDISAEIGEMLE-----ISETVIENCKSI 345 (580)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~ 345 (580)
...+..+...|+..++ +.+.......+++.++.++..+.. ....+|.++++.
T Consensus 306 ----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~ 381 (485)
T 3ip4_A 306 ----IPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKV 381 (485)
T ss_dssp ----HHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 1122222222322211 111222234577888888776642 222458899999
Q ss_pred HHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccC
Q 008025 346 RNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHG 425 (580)
Q Consensus 346 r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~ 425 (580)
|..+++.+.++|+++|+||+||+|.+||+++....+..... ....||.++|++|+|+++||++..+|+|+|+|++++++
T Consensus 382 r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~ 460 (485)
T 3ip4_A 382 RTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPF 460 (485)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTT
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCC
Confidence 99999999999999999999999999999987543322211 12238999999999999999999899999999999999
Q ss_pred CChHHHHHHHHHHHHH
Q 008025 426 GDRFLLDTVQNMYASL 441 (580)
Q Consensus 426 ~d~~ll~la~~le~~l 441 (580)
+|..+++++..+|+..
T Consensus 461 ~d~~lL~~A~~lE~~~ 476 (485)
T 3ip4_A 461 DEKTLYRVAYQYETQY 476 (485)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999998754
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.5e-86 Score=693.94 Aligned_cols=412 Identities=24% Similarity=0.320 Sum_probs=332.7
Q ss_pred HHHHhhhhhhHHH-----HHHHH----hh--hccCCccceeeccccCCCCCCCCCCC-CCCCCCceeeeecccccCCccc
Q 008025 9 WVLLGLGLAGILL-----MTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKA-PHPLTGLSFAVSDLFDIEGYVT 76 (580)
Q Consensus 9 ~~~~~~~l~~~~~-----~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~-~gpl~Gvp~~vKD~~~~~g~~t 76 (580)
..+++++|+++++ +.|++ +| ++||.+|||++..+++++++|+.... .||||||||+|||+|+++|++|
T Consensus 3 ~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~t 82 (478)
T 3h0l_A 3 WKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKT 82 (478)
T ss_dssp TTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSBC
T ss_pred CcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCCc
Confidence 4467888888854 44443 33 78999999999988766555433222 7999999999999999999999
Q ss_pred CCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCC
Q 008025 77 GFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLV 156 (580)
Q Consensus 77 t~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~ 156 (580)
|+||+.+.+ +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+|++
T Consensus 83 t~Gs~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~ 160 (478)
T 3h0l_A 83 TCASKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSA 160 (478)
T ss_dssp CTTCGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSS
T ss_pred CCcCHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCC
Confidence 999999987 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc----------
Q 008025 157 DFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------- 226 (580)
Q Consensus 157 ~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~---------- 226 (580)
|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 161 ~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~~ 240 (478)
T 3h0l_A 161 PVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPE 240 (478)
T ss_dssp SCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCC
T ss_pred ceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988654221
Q ss_pred -------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHH
Q 008025 227 -------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVM 297 (580)
Q Consensus 227 -------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 297 (580)
..++.||++..+.+. ...++++.++++++++.|+ |++|++ +++ |.+... ...+
T Consensus 241 ~~~~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~--------p~~~~~-------~~~~ 302 (478)
T 3h0l_A 241 WSEEVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGFEIKE-VSL--------PHVKYS-------IPTY 302 (478)
T ss_dssp HHHHTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH-------HHHH
T ss_pred hhhhhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH-------HHHH
Confidence 134567777665432 2358899999999999986 777643 222 222211 1122
Q ss_pred HHHHHHHHhhhh-------------------HHHHHhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHH
Q 008025 298 RLIQRYEFKNNH-------------------NEWIESVKPALDPDISAEIGEMLE-----ISETVIENCKSIRNEMRSAI 353 (580)
Q Consensus 298 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~r~~~~~~~ 353 (580)
..+...|+..++ ..+.......+++.++.++..+.. +...+|.++++.|..+++.+
T Consensus 303 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~ 382 (478)
T 3h0l_A 303 YIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDF 382 (478)
T ss_dssp HHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHH
Confidence 222223332221 111122234578888888877652 22346889999999999999
Q ss_pred HhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHH
Q 008025 354 SSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433 (580)
Q Consensus 354 ~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~l 433 (580)
.++|+++|+||+||+|.+||+++....+..... ....||.++|++|+|+++||++..+|+|+|+|+++++++|..++++
T Consensus 383 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~ 461 (478)
T 3h0l_A 383 LKAFEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQI 461 (478)
T ss_dssp HHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHH
T ss_pred HHHHhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHH
Confidence 999999999999999999999987643322211 1224899999999999999999988999999999999999999999
Q ss_pred HHHHHHHH
Q 008025 434 VQNMYASL 441 (580)
Q Consensus 434 a~~le~~l 441 (580)
+..+|+..
T Consensus 462 A~~lE~~~ 469 (478)
T 3h0l_A 462 SYLWEQKF 469 (478)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99998754
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=2.5e-86 Score=690.15 Aligned_cols=405 Identities=24% Similarity=0.341 Sum_probs=329.8
Q ss_pred hhhhhhHH-----HHHHHH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCCh
Q 008025 13 GLGLAGIL-----LMTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81 (580)
Q Consensus 13 ~~~l~~~~-----~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~ 81 (580)
+++|++++ ++.|++ +| ++||.+|||++.. +.++++|+......|||||||+|||+|+++|++||+||+
T Consensus 3 a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~ 81 (471)
T 3kfu_E 3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSR 81 (471)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCH
Confidence 56677764 444543 33 7899999999999 887776655444459999999999999999999999999
Q ss_pred hhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccc
Q 008025 82 EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLG 161 (580)
Q Consensus 82 ~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~g 161 (580)
.+.+ +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+|++|+|+|
T Consensus 82 ~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~G 159 (471)
T 3kfu_E 82 LLEN--FVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALG 159 (471)
T ss_dssp TTTT--CCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEE
T ss_pred hHcC--CCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccc
Confidence 9987 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc---------------
Q 008025 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------------- 226 (580)
Q Consensus 162 tD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--------------- 226 (580)
||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 160 tDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~ 239 (471)
T 3kfu_E 160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALE 239 (471)
T ss_dssp EESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSC
T ss_pred cCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999987654221
Q ss_pred -CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHH
Q 008025 227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 303 (580)
Q Consensus 227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 303 (580)
..++.||++..+.+ ...++++.++++++++.|+ |++|++ ++ .|.+... ...+..+...
T Consensus 240 ~~~~~lrIgv~~~~~---~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~-------~~~~~~~~~~ 300 (471)
T 3kfu_E 240 GPLPPLRLGVVREAL---AGNSPGVERALEEALKVFRELGLSVRE-VS--------WPSLPQA-------LAAYYILAPA 300 (471)
T ss_dssp CCCSSCEEEEEGGGT---TTCCHHHHHHHHHHHHHHHTTTCEEEE-EC--------CTTGGGH-------HHHHHHHHHH
T ss_pred cCCCCCEEEEECCcc---CCCCHHHHHHHHHHHHHHHHcCCeeee-ec--------CccHHHH-------HHHHHHHHHH
Confidence 12345677665543 3358899999999999986 776643 22 2322211 1122222222
Q ss_pred HHhh-----------------hhHHHHHhhCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008025 304 EFKN-----------------NHNEWIESVKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAISSLLKDDG 361 (580)
Q Consensus 304 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~D 361 (580)
|+.. .+..++......+++.++.++..+..+ +..+|.++++.|..+++.+.++|+++|
T Consensus 301 e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 380 (471)
T 3kfu_E 301 EASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVD 380 (471)
T ss_dssp HHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHhhhhccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3222 122233332334899999988776533 335899999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHH
Q 008025 362 ILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (580)
Q Consensus 362 vll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l 441 (580)
+||+||++.+||+++....+...+.. ..||.++|++|+|+++||+++.+|+|+|+|+++++++|..+++++..+|+..
T Consensus 381 vll~Pt~~~~a~~~~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~ 458 (471)
T 3kfu_E 381 LLLLPTTPHPAFPFGARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEAT 458 (471)
T ss_dssp EEEEESCSSSCCBTTTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred EEEeCCcCCCCCccccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999875332222221 2389999999999999999998899999999999999999999999998654
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=4.2e-86 Score=696.71 Aligned_cols=415 Identities=18% Similarity=0.234 Sum_probs=340.0
Q ss_pred hhHHHHhhhhhhHHHHHH-----HH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeeccc-ccCCc
Q 008025 7 NLWVLLGLGLAGILLMTK-----KL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLF-DIEGY 74 (580)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~-----~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~-~~~g~ 74 (580)
++.. ++.+|+++++.+| ++ +| ++||.+|||++..+++++++++. . .||||||||+|||+| +++|+
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~ 81 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGD 81 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTS
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCC
Confidence 4555 8889999865554 32 33 78999999999888766665544 3 699999999999999 99999
Q ss_pred ccCCCChhhh--hcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHh
Q 008025 75 VTGFGHPEWA--RTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152 (580)
Q Consensus 75 ~tt~Gs~~~~--~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVa 152 (580)
+||+||+.|. + +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||
T Consensus 82 ~Tt~Gs~~~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVA 159 (493)
T 3a2q_A 82 INTSSIKGMKESG--YRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVA 159 (493)
T ss_dssp BCCTTCHHHHHHT--CBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHH
T ss_pred cccccChhhhhcC--CCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHH
Confidence 9999999998 6 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCcccccccccCccccccCCCccccCCC--c-ccCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008025 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGI--I-PISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--- 226 (580)
Q Consensus 153 ag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~--~-p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--- 226 (580)
+|++|+|+|||||||||+||+||||||||||+||||+.|+ + |++.++|++|||+|+++|++.+++++.+.+..+
T Consensus 160 aG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~ 239 (493)
T 3a2q_A 160 AALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFC 239 (493)
T ss_dssp TTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCC
T ss_pred cCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCccc
Confidence 9999999999999999999999999999999999999998 5 888899999999999999999999988653211
Q ss_pred --------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhh
Q 008025 227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN 290 (580)
Q Consensus 227 --------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~ 290 (580)
..++.||++..+.+......++++.++++++++.|+ |++|++ +++ |.+..
T Consensus 240 ~~~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~----- 305 (493)
T 3a2q_A 240 APTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-AYP--------EALGD----- 305 (493)
T ss_dssp CCCCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCC--------GGGGC-----
T ss_pred ccCCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CccCH-----
Confidence 123456776655431012347899999999999986 777643 222 11110
Q ss_pred hhHHHHHHHHHHHHHhh---hhHHHHH--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhc-CCCCEEE
Q 008025 291 GELKNVMRLIQRYEFKN---NHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL-KDDGILV 364 (580)
Q Consensus 291 ~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~Dvll 364 (580)
..+...+..+...+.+. .+..++. .....+++.++.+++.+..++..+|.++++.|..+++.+.++| +++|+||
T Consensus 306 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll 385 (493)
T 3a2q_A 306 RSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLI 385 (493)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 00112222333334443 2333342 2345789999999999999999999999999999999999999 9999999
Q ss_pred EcCCCCCCCCCCCCCCc------------hHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHH
Q 008025 365 TPTTAYPPPKLGGKEML------------SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL 431 (580)
Q Consensus 365 ~Pt~~~~ap~~~~~~~~------------~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll 431 (580)
+||++.+||+++..... .+. ...+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..++
T Consensus 386 ~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL 464 (493)
T 3a2q_A 386 LPTVTRQTPEIGELMLAKGTDLEGRQSAFISG-SLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLL 464 (493)
T ss_dssp EESCSSCCCBTTTTCCCTTCCCCSSCGGGSHH-HHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHH
T ss_pred cCCCCCCCCCCcccccccccccccccchhhhh-hhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHH
Confidence 99999999999865321 111 22345699999999999999999974 89999999999999999999
Q ss_pred HHHHHHHHHH
Q 008025 432 DTVQNMYASL 441 (580)
Q Consensus 432 ~la~~le~~l 441 (580)
+++..+|+..
T Consensus 465 ~~A~~lE~~~ 474 (493)
T 3a2q_A 465 QVAAQLEGAL 474 (493)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 6
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=3.8e-85 Score=672.02 Aligned_cols=393 Identities=22% Similarity=0.275 Sum_probs=332.5
Q ss_pred HhhhhhhHHHHH-----HHH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCC
Q 008025 12 LGLGLAGILLMT-----KKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH 80 (580)
Q Consensus 12 ~~~~l~~~~~~~-----~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs 80 (580)
++.+|+++++.+ |++ +| +.||.+|||++..++++ + ...||||||||+|||+|+++|++||+||
T Consensus 3 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs 76 (414)
T 1o9p_A 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGS 76 (414)
T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCC
Confidence 567777774444 432 33 78999999999988766 2 4579999999999999999999999999
Q ss_pred hhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCcccc
Q 008025 81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL 160 (580)
Q Consensus 81 ~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~ 160 (580)
+.|.+ +++.+|+++|+|||++|||++||||||||++ +|. |+|+||||++|+|||||||||||||+|++|+|+
T Consensus 77 ~~~~~--~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~al 148 (414)
T 1o9p_A 77 EIYRG--WQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLAL 148 (414)
T ss_dssp GGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred Hhhcc--CCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEE
Confidence 99987 6888999999999999999999999999998 444 999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCcc---cCCCCceEEEcc
Q 008025 161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA---AQRSPRQIIIAD 237 (580)
Q Consensus 161 gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~---~~~~~~~l~i~~ 237 (580)
|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+.. ....+.||++..
T Consensus 149 GtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~ 228 (414)
T 1o9p_A 149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR 228 (414)
T ss_dssp EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred eeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999998875421 123456777765
Q ss_pred chhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHh
Q 008025 238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES 315 (580)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (580)
+... ...++++.++++++++.|+ |++|++ ++ .|.... . +...+..+...+.+..+..++..
T Consensus 229 ~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~---~---~~~~~~~~~~~e~~~~~~~~~~~ 291 (414)
T 1o9p_A 229 QEFA--GAVEPAAEQGLQAAIKAAERAGASVQA-ID--------LPEAVH---E---AWRIHPIIQDFEAHRALAWEFSE 291 (414)
T ss_dssp CGGG--CCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CCHHHH---H---HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHH---H---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5432 3358899999999999986 666532 21 221110 0 22233445556777777788877
Q ss_pred hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhc
Q 008025 316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI 395 (580)
Q Consensus 316 ~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~ 395 (580)
....+++.++.++..+..++..+|.++++.|+.+++.+.++|+++|+||+||++.++|+++..... ...||.+
T Consensus 292 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~-------~~~~t~~ 364 (414)
T 1o9p_A 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRL 364 (414)
T ss_dssp SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CGGGTHH
T ss_pred ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCc-------ccchhhh
Confidence 777899999999999999999999999999999999999999999999999999999998643211 1258999
Q ss_pred ccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 396 ~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
+|++|+|+++||++...|+|+|+|+++++++|..+++++..+|+.+.
T Consensus 365 ~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp HHHHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred hHhcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 99999999999999766999999999999999999999999997654
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=2.3e-85 Score=688.08 Aligned_cols=407 Identities=21% Similarity=0.282 Sum_probs=326.3
Q ss_pred hhHHHHhhhh--hhHHHHHHHH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCC
Q 008025 7 NLWVLLGLGL--AGILLMTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGF 78 (580)
Q Consensus 7 ~~~~~~~~~l--~~~~~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~ 78 (580)
++..+++.+| .+-+++.|++ +| ++||.+|||++..+++++.+ . ||||||||+|||+|+++|++||+
T Consensus 6 ~~~~~s~~~li~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald~-----~-gpL~GvPi~vKD~~~v~G~~Tt~ 79 (476)
T 2gi3_A 6 DFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK-----K-GKFWGIPVAIKDNILTLGMRTTC 79 (476)
T ss_dssp CGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C-STTTTCEEEEETTBCCSSSCCCT
T ss_pred ccccCCHHHHHHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhhc-----c-CCcCCceEEEEcCccCCCCccCc
Confidence 3444556665 0116666653 33 78999999999988877622 2 99999999999999999999999
Q ss_pred CChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCcc
Q 008025 79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF 158 (580)
Q Consensus 79 Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~ 158 (580)
||+.+.+ +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+
T Consensus 80 Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~ 157 (476)
T 2gi3_A 80 ASRILEN--YESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVA 157 (476)
T ss_dssp TCGGGTT--CCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSE
T ss_pred cChhhcC--CCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCce
Confidence 9999987 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc------------
Q 008025 159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------ 226 (580)
Q Consensus 159 a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------------ 226 (580)
|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||+|+++|++.+++++.+.+..+
T Consensus 158 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~ 237 (476)
T 2gi3_A 158 ALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLS 237 (476)
T ss_dssp EEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSST
T ss_pred EeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999987653211
Q ss_pred ----CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHH
Q 008025 227 ----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI 300 (580)
Q Consensus 227 ----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 300 (580)
..++.||++..+.+. ...++++.++++++++.|+ |++|++ +++ |.+... ...+..+
T Consensus 238 ~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~-------~~~~~~~ 299 (476)
T 2gi3_A 238 EIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVER-VKI--------PHIKYS-------VATYYVI 299 (476)
T ss_dssp TTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH-------HHHHHHH
T ss_pred hhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHH-------HHHHHHH
Confidence 123467777665431 2357899999999999986 777643 222 222111 1111122
Q ss_pred HHHHHhhhh-----------------HHHHHh-hCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhc
Q 008025 301 QRYEFKNNH-----------------NEWIES-VKPALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLL 357 (580)
Q Consensus 301 ~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~ 357 (580)
...+.+..+ ..++.. ....+++.++.++..+..++. .+|.++++.|..+++.++++|
T Consensus 300 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~ 379 (476)
T 2gi3_A 300 APAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL 379 (476)
T ss_dssp HHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 112221 234678888888887765443 378899999999999999999
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHH
Q 008025 358 KDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM 437 (580)
Q Consensus 358 ~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~l 437 (580)
+++|+||+||++.+||+++........+. ...||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+
T Consensus 380 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~l 457 (476)
T 2gi3_A 380 SQYDAILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAI 457 (476)
T ss_dssp HHSSEEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred hcCCEEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999999999987211122221 1358999999999999999999899999999999999999999999999
Q ss_pred HHHH
Q 008025 438 YASL 441 (580)
Q Consensus 438 e~~l 441 (580)
|+..
T Consensus 458 E~~~ 461 (476)
T 2gi3_A 458 EKNS 461 (476)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8764
No 8
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=2.2e-84 Score=684.52 Aligned_cols=408 Identities=24% Similarity=0.278 Sum_probs=327.8
Q ss_pred ccchhHHHHhhhhhhHHHHH-----HHH----hh--hcc---CCccceeeccccCCCCCCC-------CCCCCCCCCCce
Q 008025 4 QSANLWVLLGLGLAGILLMT-----KKL----KK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLS 62 (580)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~-----~~~----~~--~~~---~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp 62 (580)
..-++..+++.+|+++++.+ |++ +| ++| |.+|||++..++ ++++|+ .++..|||||||
T Consensus 4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvP 82 (503)
T 1m22_A 4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIP 82 (503)
T ss_dssp -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCE
T ss_pred CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCce
Confidence 34467777899999985544 432 33 778 999999998876 555442 356679999999
Q ss_pred eeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEecccccccc-----ccCCCCCCCCCCCCCCCCC
Q 008025 63 FAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPS 137 (580)
Q Consensus 63 ~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~-----~~~~~~~~~G~~~NP~~~~ 137 (580)
|+|||+|+++|++||+||+.|.+ +++ +|+++|+|||+||||++||||||||++ +.+|+|.+||+|+||||++
T Consensus 83 i~vKD~~~v~G~~Tt~Gs~~~~~--~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~ 159 (503)
T 1m22_A 83 LLLKDNINAAPMATSAGSLALQG--FRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS 159 (503)
T ss_dssp EEEETTBCCTTSCCCTTCGGGTT--CCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred eEeecccccCCCCcCCCCHhhcC--CCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999987 688 999999999999999999999999998 7899999999999999999
Q ss_pred CCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHH
Q 008025 138 QMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGH 217 (580)
Q Consensus 138 ~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~ 217 (580)
|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||+|+++|++.+++
T Consensus 160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~ 239 (503)
T 1m22_A 160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239 (503)
T ss_dssp BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccc---------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccc
Q 008025 218 VLLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGE 274 (580)
Q Consensus 218 ~l~~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~ 274 (580)
++.+.+..+ ..++.||++..+.+ . .++++.++++++++.|+ |++|++ +++
T Consensus 240 vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~-~---~~~~v~~a~~~a~~~L~~~G~~v~~-~~~-- 312 (503)
T 1m22_A 240 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL-L---KYRGMPPLIEQAATELRRAGAVVVP-VEL-- 312 (503)
T ss_dssp HHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG-G---GSTTHHHHHHHHHHHHHHTTCEEEE-ECC--
T ss_pred HHcCCCCCCccccccccccccchhhhccccCCCCCEEEEECccc-c---CCHHHHHHHHHHHHHHHHcCCEEEE-eCC--
Confidence 987643211 12456777766543 1 46789999999999886 777753 332
Q ss_pred cccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHH---------------------hhCCCCCHHHHHHHHHhhc
Q 008025 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE---------------------SVKPALDPDISAEIGEMLE 333 (580)
Q Consensus 275 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~ 333 (580)
|.+.++.. .+..+...++..++..|+. .....+++.++.++..+..
T Consensus 313 ------p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (503)
T 1m22_A 313 ------PNQGAWAE-------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAG 379 (503)
T ss_dssp ------TTTTTTHH-------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCC
T ss_pred ------CcHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCC
Confidence 21111100 0111111222222222221 1134577888888888888
Q ss_pred CCHHHHHHHHHHHHHHHHH--HHhhcCC--CCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCc
Q 008025 334 ISETVIENCKSIRNEMRSA--ISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG 409 (580)
Q Consensus 334 ~s~~~~~~a~~~r~~~~~~--~~~~~~~--~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~ 409 (580)
++..+|.++++.|+.+++. +.++|++ +|+||+||+ .++|+++..... + ...||.++|++|+|+++||++
T Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~---~---~~~~t~~~nl~G~PaisvP~g 452 (503)
T 1m22_A 380 LADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGDD---F---PGESYSAAAVAGYPSLTVPMG 452 (503)
T ss_dssp TTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC---C---C---TTCCHHHHHHHTCCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccCc---c---cccccccchhhCCCeEEeccc
Confidence 9999999999998888876 9999984 999999999 567776532111 1 145899999999999999999
Q ss_pred CCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025 410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (580)
Q Consensus 410 ~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~ 442 (580)
+.+|+|+|+|+++++++|..+++++..+|+...
T Consensus 453 ~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~~ 485 (503)
T 1m22_A 453 QIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTR 485 (503)
T ss_dssp EETTEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCeEEEEECCCCChHHHHHHHHHHHHhhC
Confidence 889999999999999999999999999997653
No 9
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=7.8e-83 Score=672.05 Aligned_cols=376 Identities=23% Similarity=0.299 Sum_probs=307.2
Q ss_pred CCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCC
Q 008025 52 PKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT 131 (580)
Q Consensus 52 ~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~ 131 (580)
+...|||+||||+|||+|+++|++||+||+.+.+ +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+
T Consensus 82 g~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~ 159 (521)
T 3a1k_A 82 PTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEG--FTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVR 159 (521)
T ss_dssp CSSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTT--BCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCE
T ss_pred CCCCCCCCCCEEEEEcCcccCCcccCCCChhhcC--CCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcC
Confidence 4557999999999999999999999999999987 68999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHH
Q 008025 132 NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKI 211 (580)
Q Consensus 132 NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d 211 (580)
||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|
T Consensus 160 NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D 239 (521)
T 3a1k_A 160 NPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHD 239 (521)
T ss_dssp ETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHH
T ss_pred CCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccc------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCccccccc
Q 008025 212 LRHVGHVLLQLPFAA------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHEN 271 (580)
Q Consensus 212 ~~~v~~~l~~~~~~~------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~ 271 (580)
++.+++++.+.+..+ ..++.||++..+.+. ....++++.++++++++.|+ |++|++ ++
T Consensus 240 ~a~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~ 317 (521)
T 3a1k_A 240 AALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFG-HAVSQPEVDDAVRAAAHSLTEIGCTVEE-VN 317 (521)
T ss_dssp HHHHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSC-CSSSCHHHHHHHHHHHHGGGGGTCEEEE-EC
T ss_pred HHHHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECcccc-ccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC
Confidence 999999988654221 123456777655322 11247899999999999986 666643 22
Q ss_pred ccccccccCCchhhhhhhhhhHH--HHHHHHH-------------HHHHhhhhHHHHHhhCCCCCHHHHHHHHHhh----
Q 008025 272 LGEYFDSKVPSLKGFHKTNGELK--NVMRLIQ-------------RYEFKNNHNEWIESVKPALDPDISAEIGEML---- 332 (580)
Q Consensus 272 l~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---- 332 (580)
+ |.+......+..+. .....+. ..+....+..|.......+++.++.++..+.
T Consensus 318 ~--------p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 389 (521)
T 3a1k_A 318 I--------PWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGIT 389 (521)
T ss_dssp C--------THHHHHHHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHT
T ss_pred C--------CchHhHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhc
Confidence 2 22111100000000 0000000 0122223444555556678999999987764
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHH---HhhhhhcccccCCceeeeeCc
Q 008025 333 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNR---AFSLLSIASVSGCCQVTVPLG 409 (580)
Q Consensus 333 ~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~---~~~~t~~~n~~g~P~~~~P~~ 409 (580)
.++..+|.++++.|..+++.++++|+++|+||+||+|.+||+++....+...+..+ +..||.++|++|+|+++||++
T Consensus 390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 469 (521)
T 3a1k_A 390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG 469 (521)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence 46778999999999999999999999999999999999999998754333333332 345799999999999999999
Q ss_pred CCCCCCcccceecccCCChHHHHHHHHHHH
Q 008025 410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (580)
Q Consensus 410 ~~~~lp~g~q~~~~~~~d~~ll~la~~le~ 439 (580)
..+|+|+|+|+++++++|..+++++..+|+
T Consensus 470 ~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~ 499 (521)
T 3a1k_A 470 LVNGLPVGMMITGRHFDDATVLRVGRAFEK 499 (521)
T ss_dssp EETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 989999999999999999999999999987
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=1.1e-80 Score=657.18 Aligned_cols=419 Identities=20% Similarity=0.220 Sum_probs=323.5
Q ss_pred cchhHHHHhhhhhhHHHHHH-----HH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCC
Q 008025 5 SANLWVLLGLGLAGILLMTK-----KL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEG 73 (580)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~-----~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g 73 (580)
..+++.+|+++|+++++.+| ++ +| ++||.+|||++.+++. .++++.....||||||||+|||+|+++|
T Consensus 65 ~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~~~~~G 143 (573)
T 3ppm_A 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKECFSYKG 143 (573)
T ss_dssp HHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETTBCCBT
T ss_pred hhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcccCCCC
Confidence 35678889999999965554 32 33 7899999999987652 2222222335999999999999999999
Q ss_pred cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025 74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153 (580)
Q Consensus 74 ~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa 153 (580)
++||+||+.+.+ +++.+|+++|++|++||||++||||||||+++.+|+|++||+|+||||+.++||||||||||+||+
T Consensus 144 ~~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAa 221 (573)
T 3ppm_A 144 HDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGS 221 (573)
T ss_dssp CCCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHT
T ss_pred CCcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHc
Confidence 999999999987 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCC----CCcccccccCHHHHHHHHHHhcCCC------
Q 008025 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS----LDTVGWFARDPKILRHVGHVLLQLP------ 223 (580)
Q Consensus 154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~s----ld~~G~~ar~~~d~~~v~~~l~~~~------ 223 (580)
|++|+|+|||||||||+||+||||||||||+||+|+.|++|.+.+ +|++|||+|+++|++.+++++.+.+
T Consensus 222 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~ 301 (573)
T 3ppm_A 222 GGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDP 301 (573)
T ss_dssp TSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCT
T ss_pred CCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCC
Confidence 999999999999999999999999999999999999999998765 8999999999999999999876432
Q ss_pred ------cc----cCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhh-
Q 008025 224 ------FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN- 290 (580)
Q Consensus 224 ------~~----~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~- 290 (580)
+. ....+.||++..+.. ...+++++.++++++++.|. ||+|++ +++ |.+.+.....
T Consensus 302 ~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~~~~~ 370 (573)
T 3ppm_A 302 TVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIP-FLP--------NNIPYALEVLS 370 (573)
T ss_dssp TSCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCC--------TTHHHHHHTHH
T ss_pred CCCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCCCEEEE-ecC--------ccHHHHHHHHH
Confidence 11 123456777764432 23357899999999999986 887753 222 2221100000
Q ss_pred -----hh-HHHHHHHHHHHHH--------------hhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008025 291 -----GE-LKNVMRLIQRYEF--------------KNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350 (580)
Q Consensus 291 -----~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~ 350 (580)
.+ .......+. .+. -..+...+......+.+.+...+..+...+..+++++...|+.++
T Consensus 371 ~~~~~~dg~~~~~~~~~-~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r 449 (573)
T 3ppm_A 371 TGGLFSDGGRSFLQNFK-GDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYR 449 (573)
T ss_dssp HHHHTTBTTHHHHGGGT-TSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHhc-cCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 00 000000000 000 000000001111234455556666777789999999999999999
Q ss_pred HHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC-----------------
Q 008025 351 SAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY----------------- 411 (580)
Q Consensus 351 ~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~----------------- 411 (580)
+.+.++|. ++|+||+|+ +.++++++.... ....+.||.+||++|+|+++||++..
T Consensus 450 ~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~-----~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~ 523 (573)
T 3ppm_A 450 QSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR-----ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGD 523 (573)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCS
T ss_pred HHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----cccccchhhhhHhhCCCeEEEecccccccccccccccccccch
Confidence 99999995 599999999 558888875311 11345699999999999999999853
Q ss_pred -------------CCCCcccceecccCCChHHHHHHHHHHHHHHHh
Q 008025 412 -------------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ 444 (580)
Q Consensus 412 -------------~~lp~g~q~~~~~~~d~~ll~la~~le~~l~~~ 444 (580)
.|+|+|+|+++++++|+.++.++..+++.++..
T Consensus 524 ~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~ 569 (573)
T 3ppm_A 524 IWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ 569 (573)
T ss_dssp HHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred hhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc
Confidence 599999999999999999999999999876543
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.85 E-value=3.2e-20 Score=158.87 Aligned_cols=118 Identities=31% Similarity=0.453 Sum_probs=115.2
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.+|+.++.++++|+.++++|+|++|++.|+++++++|+++.+|+++|.+|.++|++++|+++|+++++++|++..+|+++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
|.+|..+|++++|+++|+++++++|++..++..++.+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998874
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=2e-17 Score=145.79 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=110.9
Q ss_pred ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
..+.+....+|++...++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+++|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 44556667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
++.+|+++|.+|..+|++++|+++|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999876
No 13
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.76 E-value=2.3e-18 Score=150.22 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NAT-----YYSNRAAAYLESGSFLQAEADCTKAINL- 527 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~l- 527 (580)
...+..++++|+.+++.|+|++|+..|+++++++|+ +.. +|+++|.++.++|+|++|+.+|+++|++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 528 ------DKKNVKAY----LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 528 ------~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
+|++..+| +++|.++..+|++++|+++|+++++++|++......+..+++++
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999998888888887764
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=1e-17 Score=148.02 Aligned_cols=122 Identities=11% Similarity=-0.002 Sum_probs=113.8
Q ss_pred chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
....|+....++.+|.+|++.|+|++|++.|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|+++.+++
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 33457788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 537 RRGTAREMLGYYKEAIED-FSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 537 ~lg~~~~~~g~~~~A~~~-~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++|.+|.++|++++|.+. ++++++++|+++.++..++++...
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 999999999999887765 599999999999999998887653
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.8e-17 Score=140.18 Aligned_cols=118 Identities=33% Similarity=0.425 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
..+..++.+|..+++.|+|++|+..|+++++++|++..+|+++|.+|.++|++++|+++|+++++++|++..+|+++|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhhh
Q 008025 542 REMLGYYKEAIEDFSYALVLE------PTNKRASLSADRLRKVF 579 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~l~~~~ 579 (580)
+..+|++++|+++|+++++++ |++..++..+..+.+.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999 99999999999998775
No 16
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.73 E-value=8.6e-17 Score=137.65 Aligned_cols=115 Identities=30% Similarity=0.414 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VK 533 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------~~ 533 (580)
++.+.++.++|+.++++|+|++|+++|+++++++|++..+|+++|.+|+++|+|++|+++|+++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999998865 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+|+++|.++..+|++++|+++|+++++..|+ ++....+..++
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le 126 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE 126 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence 8999999999999999999999999999884 67777776664
No 17
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=8.3e-17 Score=141.72 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=112.4
Q ss_pred chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
...+|++...++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|+++.+++
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 44568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 537 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 537 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++|.+|..+|++++|+++|+++++++|+++........+..
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 99999999999999999999999999988766555555443
No 18
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.71 E-value=1.2e-16 Score=139.51 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=115.0
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
.+....+|++...++.+|..+++.|+|++|+..|+++++.+|+++.+|+++|.+|..+|++++|+++|+++++++|+++.
T Consensus 8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+++++|.+|..+|++++|+++|+++++++|+++........+...
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999888766666555443
No 19
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.70 E-value=1.8e-16 Score=141.78 Aligned_cols=119 Identities=26% Similarity=0.368 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------------------NGNNATYYSNRAAAYLESGSFLQAEADCT 522 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 522 (580)
...+..+..+|+.+++.|+|++|+..|++++++ +|.+..+|+++|.||+++|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 467889999999999999999999999999999 77778999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHhhh
Q 008025 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRLRKVF 579 (580)
Q Consensus 523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~l~~l~~~~ 579 (580)
++++++|+++.+|+++|.+|..+|++++|+++|+++++++|+++ .+...+..+.+.+
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 7788888887654
No 20
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.70 E-value=3.2e-16 Score=140.34 Aligned_cols=119 Identities=32% Similarity=0.412 Sum_probs=110.4
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.++..+..++.+|..+++.|+|++|+..|+++++++|++..+|+++|.+|+.+|++++|+++|+++++++|++..+|+++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHh
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRAS--LSADRLRK 577 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~--~~l~~l~~ 577 (580)
|.+|..+|++++|+++|+++++++|++..++ ..+..+++
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR 126 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999998744 44444443
No 21
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.67 E-value=4.6e-16 Score=171.35 Aligned_cols=134 Identities=19% Similarity=0.114 Sum_probs=124.4
Q ss_pred HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
...+...+.+.++.+|+...+++++|.++.++|++++|++.|+++++++|++..+|+++|.+|.++|++++|+++|++++
T Consensus 25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl 104 (723)
T 4gyw_A 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI 104 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444555566667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 526 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 526 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
+++|++..+|+++|.+|..+|++++|+++|+++++++|++..++.+++.+...+
T Consensus 105 ~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 999999999999999999999999999999999999999999999999887653
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.64 E-value=2.2e-15 Score=165.89 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=116.1
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..|+++++++++|+++.++|++++|++.|+++++++|++..+|++||.+|.++|++++|+++|+++++++|+++.+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
|.+|.++|++++|+++|+++++++|++..++.+++.+...+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~ 124 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999987653
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.7e-15 Score=140.16 Aligned_cols=127 Identities=16% Similarity=0.050 Sum_probs=91.8
Q ss_pred hccccccchhchHHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008025 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKD-----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518 (580)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 518 (580)
...+......+|+....++.+|.++... |++++|+..|+++++++|++..+++++|.+|..+|++++|+
T Consensus 59 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 59 LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 3344445555666777777777777777 77777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 519 ~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+.|+++++++ +++.+++++|.+|..+|++++|++.|+++++++|+++.++..++.+..
T Consensus 139 ~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 139 ASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 7777777777 777777777777777777777777777777777777777777766643
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.2e-15 Score=155.92 Aligned_cols=133 Identities=10% Similarity=-0.041 Sum_probs=122.2
Q ss_pred HHhhhccccccchhchHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
...+...+...+..+|++..+|+.+|.++...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+++|+++
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3344455556667788999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 525 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
|+++|++..+|+++|.++..+|++++|+++|+++++++|++..+|..++.+...
T Consensus 193 l~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 193 LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988654
No 25
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=5e-15 Score=149.14 Aligned_cols=124 Identities=27% Similarity=0.335 Sum_probs=117.0
Q ss_pred ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHH
Q 008025 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEA 519 (580)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~ 519 (580)
.....++..+..++.+|+.+++.|+|++|+..|+++++++|++ ..+|+++|.+|+++|+|++|++
T Consensus 138 ~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344567888999999999999999999999999999999998 6999999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 520 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus 218 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988764
No 26
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.63 E-value=7e-15 Score=136.02 Aligned_cols=130 Identities=28% Similarity=0.319 Sum_probs=119.8
Q ss_pred hccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCC
Q 008025 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRAAAYLESGS 513 (580)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~ 513 (580)
...+.......+..+..++.+|..++..|+|++|+..|++++++.|+++ .+++++|.+|..+|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 103 (198)
T 2fbn_A 24 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD 103 (198)
T ss_dssp CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455556677888999999999999999999999999999999887 899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 514 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 514 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
+++|+++|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..++.+...+
T Consensus 104 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887653
No 27
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.63 E-value=4.1e-15 Score=128.31 Aligned_cols=119 Identities=32% Similarity=0.417 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
++..+..++.+|..++..|+|++|+..|+++++++|++..+++++|.+|..++++++|+++++++++++|++..+++++|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHhh
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPT-----NKRASLSADRLRKV 578 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~l~~~ 578 (580)
.++..+|++++|+++|+++++++|+ +..+...+..+.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 78888888777654
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=6.2e-15 Score=138.64 Aligned_cols=131 Identities=18% Similarity=0.063 Sum_probs=121.2
Q ss_pred HhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHH
Q 008025 447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-----------GSFL 515 (580)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~ 515 (580)
..+...+......+|++...++.+|.++.+.|++++|+..|+++++++|++..+++++|.++..+ |+++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 33444445556677889999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 516 ~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|++.|+++++++|++..+++++|.++..+|++++|+++|+++++++ +++.++..++.+...
T Consensus 102 ~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999987654
No 29
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=1.5e-14 Score=120.46 Aligned_cols=115 Identities=32% Similarity=0.437 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
.+..++.+|..++..|++++|+..|+++++.+|++..+++++|.++..+|++++|++.++++++++|++..+++++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
..+|++++|.++|+++++++|++..++..++.+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999998865
No 30
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.62 E-value=3.3e-15 Score=126.50 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
..++.+|..+++.|++++|+..|+++++++|++..+|+.+|.++..+|++++|++.|+++++++|++..+++++|.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH
Q 008025 545 LGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
+|++++|++.|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
No 31
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.61 E-value=6.4e-15 Score=137.58 Aligned_cols=114 Identities=21% Similarity=0.184 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN----------------RAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~ 526 (580)
.++.++..|..++..|+|++|+..|+++++++|+++.+++. +|.+|..+|++++|+++|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35667888999999999999999999999999999888888 99999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 527 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
++|++..+++++|.++..+|++++|+++|+++++++|+++.++..++.+.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888764
No 32
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.61 E-value=3.1e-14 Score=120.88 Aligned_cols=122 Identities=35% Similarity=0.464 Sum_probs=115.8
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
...+.....++.+|..++..|++++|+..|+++++.+|++..+++.+|.++..++++++|+++++++++++|++..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
+|.++..+|++++|+++|+++++++|++..++..++.+...+
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887653
No 33
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.60 E-value=7.8e-15 Score=154.17 Aligned_cols=126 Identities=29% Similarity=0.413 Sum_probs=113.8
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAE 518 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~ 518 (580)
......++..+..++.+|+.++++|+|++|+..|+++++++|++ ..+|+++|.||+++++|++|+
T Consensus 258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33444567888999999999999999999999999999999998 799999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 519 ~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887643
No 34
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=124.54 Aligned_cols=120 Identities=33% Similarity=0.474 Sum_probs=115.0
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..+.....++.+|..++..|+|++|+..|+++++.+|++..+++++|.+|..++++++|+++++++++++|++..+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887654
No 35
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.60 E-value=2.2e-14 Score=133.94 Aligned_cols=132 Identities=17% Similarity=0.139 Sum_probs=112.4
Q ss_pred hHHHhhhccccccchhchHHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008025 444 QADIATKSKLSTNTFNQKQSAEIAKE----------------KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (580)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~ 507 (580)
.+...+...+......+|++...++. +|.++.+.|++++|+..|+++++++|++..+++++|.+
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 33444444555556667888888888 99999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----------------------------------cCCHHHHH
Q 008025 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM-----------------------------------LGYYKEAI 552 (580)
Q Consensus 508 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-----------------------------------~g~~~~A~ 552 (580)
|..+|++++|+++|+++++++|+++.+|+++|.+|+. +|+|++|+
T Consensus 98 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~ 177 (208)
T 3urz_A 98 QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKAR 177 (208)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999999999999998888877643 34689999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 553 EDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 553 ~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
.+|+++++++|+. .+...+.++.
T Consensus 178 ~~~~~al~l~P~~-~~~~~l~~i~ 200 (208)
T 3urz_A 178 NSLQKVILRFPST-EAQKTLDKIL 200 (208)
T ss_dssp HHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHH
Confidence 9999999999974 4555566654
No 36
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-14 Score=125.87 Aligned_cols=120 Identities=32% Similarity=0.402 Sum_probs=114.3
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
..+..+..++.+|..++..|+|++|+..|+++++++|++ ..+++++|.+|..++++++|+++|+++++++|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 345678899999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+++|.++..+|++++|+++|+++++++|++..++..+..+.+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988654
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.60 E-value=1.2e-15 Score=134.51 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=101.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 549 (580)
+|..+..+|++++|++.|++++..+|+++..++.+|.+|+++|+|++|+++|+++++++|+++.+|+++|.+|..+|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 68888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 550 EAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 550 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|+.+|+++++++|+++.++..++.+...
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987643
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=1.8e-14 Score=147.11 Aligned_cols=124 Identities=17% Similarity=0.112 Sum_probs=118.2
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKA 534 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~a 534 (580)
.+..+|+...++..+|.++.+.|++++|++.|+++++++|++..+|+++|.++..+|+ +++|+++|+++++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3455688999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
|+++|.++..+|++++|+++|+++++++|++..+|..++.+...+
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF 213 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999887654
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=1e-13 Score=126.23 Aligned_cols=131 Identities=18% Similarity=0.109 Sum_probs=93.4
Q ss_pred hhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
.+...+.+....+|++..+++.+|.++.+.|++++|+..+.+++...|++..++..+|.++...+++++|++.+.+++++
T Consensus 23 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 102 (184)
T 3vtx_A 23 GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL 102 (184)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33344444555566777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|++..+++.+|.+|..+|++++|+++|+++++++|+++.++..++.+...
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 103 NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777666543
No 40
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.58 E-value=7.4e-15 Score=127.78 Aligned_cols=104 Identities=19% Similarity=0.118 Sum_probs=96.6
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF----------LQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 475 ~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
-+.++|++|++.|+++++++|+++++|+++|.++.+++++ ++|+..|+++|+++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 545 LG-----------YYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 545 ~g-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+| ++++|+++|+++++++|++...+..+..+.+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence 85 89999999999999999999999988877653
No 41
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.57 E-value=4.4e-14 Score=120.34 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRG 539 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg 539 (580)
.++.+|..++..|+|++|+..|+++++.+|++. .+++.+|.+|+.+|++++|++.|+++++.+|++ +.+++++|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 568899999999999999999999999999988 899999999999999999999999999999999 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.++..+|++++|++.|+++++.+|+++.+......+..+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999988887777654
No 42
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=1.7e-13 Score=121.94 Aligned_cols=115 Identities=37% Similarity=0.611 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
.+.+..++.+|..++..|+|++|+..|+++++.+|++..+++++|.++..+|++++|+++++++++++|++..+++++|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
++..+|++++|+++|+++++++|++..++..++.+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999988666655
No 43
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.55 E-value=1.1e-13 Score=117.52 Aligned_cols=117 Identities=32% Similarity=0.481 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKA 534 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a 534 (580)
+.+..++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|+++++++++++|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999877 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++++|.++..+|++++|+++|++++++.| ++..+..+..+.+.+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 688888888877654
No 44
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=6.6e-14 Score=132.30 Aligned_cols=129 Identities=25% Similarity=0.180 Sum_probs=115.1
Q ss_pred hhccccccchhch-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 449 TKSKLSTNTFNQK-QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 449 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
+...+.......+ .+...++.+|.+++..|+|++|+..|+++++.+|++..+++.+|.+|..+|++++|++.|++++++
T Consensus 26 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 26 AFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3333344444444 566788889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHh
Q 008025 528 DKKNV-------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASLSADRLRK 577 (580)
Q Consensus 528 ~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~ 577 (580)
+|++. .+|+++|.++..+|++++|+++|+++++++|+ +..++..++.+..
T Consensus 106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99998 67999999999999999999999999999999 8999998887753
No 45
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.54 E-value=5.3e-14 Score=143.37 Aligned_cols=119 Identities=25% Similarity=0.360 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----------------LNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
.+.+..++.+|+.+++.|+|++|++.|+++++ ++|.+..+|+++|.+|+++++|++|+++|+++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 45667899999999999999999999999999 77888999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 525 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++++|++..+|+++|.+|..+|++++|+++|+++++++|++..++..++.+.+.+
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887653
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2e-13 Score=124.28 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
+.+..|+++|.+++++|+|++|++.|+++++++|++..+++.+|.+|.++|++++|++.++++++.+|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+...+++++|.+.++++++++|++..++..++.+...
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS 119 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887654
No 47
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=3.7e-13 Score=113.06 Aligned_cols=116 Identities=34% Similarity=0.473 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
....++.+|..++..|++++|++.|+++++.+|++..+++.+|.++...|++++|+.+++++++++|++..+++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
...|++++|+++|+++++++|++..++..++.+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988654
No 48
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=4.9e-14 Score=133.18 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=118.1
Q ss_pred ccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------TYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
+......+|.....++.+|.++...|++++|+..|+++++++|++. .+++++|.++..+|++++|+++|++++
T Consensus 65 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 65 FDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 3344455678899999999999999999999999999999999998 679999999999999999999999999
Q ss_pred HcCCC--CHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 526 NLDKK--NVKAYLRRGTAREMLGYY---------------------------KEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 526 ~l~p~--~~~a~~~lg~~~~~~g~~---------------------------~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+++|+ +..+++++|.+|..+|+. ++|+.+|+++++++|++..+...+..++
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 99999 999999999999999998 9999999999999999999999999998
Q ss_pred hhh
Q 008025 577 KVF 579 (580)
Q Consensus 577 ~~~ 579 (580)
..+
T Consensus 225 ~~~ 227 (228)
T 4i17_A 225 AMI 227 (228)
T ss_dssp TTC
T ss_pred Hhh
Confidence 754
No 49
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.52 E-value=7e-14 Score=126.55 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=110.3
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHcCCCCHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSF--LQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~l~p~~~~a~ 535 (580)
.+|.....++.+|.+++..|++++|+..|+++++++|++..+++++|.+ |...|++ ++|++.++++++++|++..++
T Consensus 39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 118 (177)
T 2e2e_A 39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118 (177)
T ss_dssp HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence 3466778999999999999999999999999999999999999999999 8899999 999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+++|.++..+|++++|+++|+++++++|++......+..+.+
T Consensus 119 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 119 MLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999998766666655544
No 50
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.51 E-value=2.1e-14 Score=144.69 Aligned_cols=124 Identities=26% Similarity=0.343 Sum_probs=100.1
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----------------TYYSNRAAAYLESGSFLQ 516 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~ 516 (580)
.......+..+..++.+|+.+++.|+|++|+..|++++++.|++. .+|+++|.+|+++++|++
T Consensus 169 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~ 248 (338)
T 2if4_A 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248 (338)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 334445567788999999999999999999999999999999877 489999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 517 A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
|+++|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..++..+..+.+
T Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988744
No 51
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.50 E-value=1e-13 Score=114.33 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRR 538 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~l 538 (580)
|.....++.+|..++..|++++|+..|+++++++|++..+++++|.++..+|++++|+++++++++++|+ +..+++++
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4456678889999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q 008025 539 GTAREML-GYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 539 g~~~~~~-g~~~~A~~~~~~al~l~p~~~ 566 (580)
|.++..+ |++++|+++++++++..|.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999999763
No 52
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.49 E-value=4.5e-14 Score=118.60 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=91.4
Q ss_pred HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008025 476 KDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552 (580)
Q Consensus 476 ~~g~~~~Ai~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 552 (580)
..|++++|+..|++++++ +|++..+++++|.+|..+|++++|+++|+++++++|+++.+++++|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 553 EDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 553 ~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
++|++++++.|+++........+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999998877666554
No 53
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=3.1e-12 Score=115.48 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=119.4
Q ss_pred HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
...+...+.......+.....++.+|..++..|++++|+..|+++++..|++..++..+|.++...|++++|++.+++++
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33344444455555667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 526 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 526 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+.+|++..+++.+|.++...|++++|+++++++++..|++..++..++.+...
T Consensus 104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887643
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.47 E-value=2.9e-13 Score=132.59 Aligned_cols=104 Identities=36% Similarity=0.479 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
..+..++.+|+.+++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..+++++|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTN 565 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~ 565 (580)
|..+|++++|+++|+++++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999976
No 55
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.46 E-value=1.1e-13 Score=152.93 Aligned_cols=128 Identities=12% Similarity=-0.026 Sum_probs=108.2
Q ss_pred hhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
.+...+.+....+|++..+++.+|.+++..|+|++|++.|+++++++|++..+++++|.+|.++|++++ +++|++++++
T Consensus 451 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 451 KATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 334444555556677888888888888888999999999999998888888888889999888898888 8888999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+|++..+|+++|.+|..+|++++|+++|+++++++|++..++..++.+.
T Consensus 530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 9988888999999999999999999999999999998888888887764
No 56
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=5.1e-14 Score=123.89 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
++-..|+++++++|++..+++++|.+++++|+|++|++.|+++++++|+++.+|+++|.+|..+|+|++|+++|++++++
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 34466888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 008025 562 EPTNKRASLSADRLRKVF 579 (580)
Q Consensus 562 ~p~~~~~~~~l~~l~~~~ 579 (580)
+|+++.++..++.+...+
T Consensus 100 ~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp SSSCCHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHc
Confidence 999999999999987654
No 57
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.46 E-value=7.4e-13 Score=143.27 Aligned_cols=123 Identities=11% Similarity=-0.019 Sum_probs=95.5
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
....+|.....++.+|..++..|+|++|++.|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++
T Consensus 15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 94 (568)
T 2vsy_A 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94 (568)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33445666777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+++|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888777776543
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=5.6e-13 Score=140.76 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=115.4
Q ss_pred ccccchhchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHH
Q 008025 453 LSTNTFNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES--------GSFL 515 (580)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~---------g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~ 515 (580)
+......+|+ ...++.+|.++... |++++|++.|+++++++|++..+|+++|.+|..+ |+++
T Consensus 160 ~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 3333444455 58999999999999 9999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 516 QAEADCTKAINLDK---KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 516 ~A~~~~~~al~l~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|+++|+++++++| +++.+|+++|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999998887654
No 59
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.2e-12 Score=125.25 Aligned_cols=117 Identities=33% Similarity=0.440 Sum_probs=112.6
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..+.....++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|+++++++++++|++..+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLE------PTNKRASLSADRL 575 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~l 575 (580)
|.++..+|++++|.++|+++++++ |++..++..+..+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999 9999998888765
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=2.6e-12 Score=121.85 Aligned_cols=131 Identities=14% Similarity=0.116 Sum_probs=108.7
Q ss_pred hhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
.+...+.......+.....++.+|..+...|++++|++.|+++++..|++..++..+|.++..+|++++|++.+++++++
T Consensus 75 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 75 RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33344444555566777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|++..+++.+|.++...|++++|++.|+++++.+|++..++..++.+...
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888877543
No 61
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.43 E-value=2.3e-13 Score=150.24 Aligned_cols=120 Identities=16% Similarity=0.077 Sum_probs=114.9
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
..+|+....++.+|..+++.|+|++|++.|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..+|++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|.+|.++|++++ +++|+++++++|++..++.+++.+...
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999988654
No 62
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.43 E-value=2.1e-13 Score=143.90 Aligned_cols=116 Identities=37% Similarity=0.607 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
++.+..++.+|..++++|+|++|++.|+++++++|++..+++++|.+|.++|++++|+++|+++++++|++..+++++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+|..+|++++|+++|+++++++|++..++..++.+.
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999888774
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=4e-12 Score=123.03 Aligned_cols=114 Identities=19% Similarity=0.124 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
.+.....++.+|..++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+++|+++++++|++..+++++|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
.+|..+|++++|+++|+++++++|++......+.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999986554433
No 64
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=2e-12 Score=132.48 Aligned_cols=127 Identities=18% Similarity=0.100 Sum_probs=116.4
Q ss_pred ccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (580)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (580)
+.......|.....+..+|..+.+.|++++|++.|+++++++|++..++.+++.++.+.|++++|++.|+++++++|++.
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 339 (388)
T 1w3b_A 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 33444455677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
.+++++|.+|.+.|++++|+++|+++++++|++..++..++.+...+
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 99999999999999999999999999999999999999999887654
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=6.2e-12 Score=119.22 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=112.0
Q ss_pred cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
.+.......+.....++.+|..++..|++++|+..|+++++..|++..+++.+|.++...|++++|++.++++++.+|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 113 MFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 33444455566778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
..+++.+|.++..+|++++|+++|+++++++|++..++..+..+..
T Consensus 193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 193 ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998877654
No 66
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=7.7e-12 Score=116.38 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---------- 532 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---------- 532 (580)
....++.+|.+++..|++++|++.|+++++++|++..+++++|.+|..+|++++|+++|++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 533 ------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 533 ------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
.+++++|.++..+|++++|+++|+++++++|++.
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999999999999999999764
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.40 E-value=1e-11 Score=105.50 Aligned_cols=111 Identities=32% Similarity=0.432 Sum_probs=81.4
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
.......+.....++.+|..+...|++++|+..|+++++..|.+...++.++.++...|++++|++.++++++.+|++..
T Consensus 25 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 104 (136)
T 2fo7_A 25 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 33344445566677777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+++.+|.++...|++++|.++++++++++|+
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777777777777777777777765
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=2.8e-12 Score=123.85 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=118.2
Q ss_pred ChHHHHHHHHHHHHHHHhHHHhhhccccccchhchHH---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHH
Q 008025 427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQS---AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATY 500 (580)
Q Consensus 427 d~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~ 500 (580)
...++..+..+. ...+...+...+.......|.. ..+++.+|.++++.|+|++|+..|+++++++|++ ..+
T Consensus 15 ~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFY---NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 344555554443 2233333333444444444444 8899999999999999999999999999998854 678
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q 008025 501 YSNRAAAYLE--------SGSFLQAEADCTKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIEDF 555 (580)
Q Consensus 501 ~~~la~~~~~--------~~~~~~A~~~~~~al~l~p~~~~a~-----------------~~lg~~~~~~g~~~~A~~~~ 555 (580)
++.+|.+|+. +|++++|++.|+++++.+|++..++ +.+|.+|..+|++++|+..|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999 9999999999999999999986665 88999999999999999999
Q ss_pred HHHHhhCCC---CHHHHHHHHHHHh
Q 008025 556 SYALVLEPT---NKRASLSADRLRK 577 (580)
Q Consensus 556 ~~al~l~p~---~~~~~~~l~~l~~ 577 (580)
+++++.+|+ ...++..++.+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHH
Confidence 999999998 4567777776543
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=3.2e-12 Score=134.93 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~-~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.+..+..++.+|..++..|+| ++|++.|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|+ ..+++++
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l 176 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL 176 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence 456788999999999999999 99999999999999999999999999999999999999999999999999 7999999
Q ss_pred HHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 539 GTAREML---------GYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 539 g~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
|.+|..+ |++++|+++|+++++++|++..++..++.+...
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS 225 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999987643
No 70
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.39 E-value=5e-12 Score=128.04 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=113.5
Q ss_pred chH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 460 QKQ--SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 460 ~~~--~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
.|. ....+..+|..+...|++++|+..|+++++++|++..+++++|.++..+|++++|++.|+++++++|++..++++
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 345 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHhhh
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTN-----------KRASLSADRLRKVF 579 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~-----------~~~~~~l~~l~~~~ 579 (580)
+|.+|..+|++++|+++|+++++++|++ ..++..++.+...+
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999998 88999988876543
No 71
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=7.8e-12 Score=119.48 Aligned_cols=115 Identities=21% Similarity=0.253 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK--------------------------LNGNNATYYSNRAAAYLESGSFLQA 517 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A 517 (580)
...++.+|..+...|++++|+..|+++++ .+|++..+++.+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 78999999999999999999999999999 6677788999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 518 ~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+++|+++++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887654
No 72
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.38 E-value=2.6e-12 Score=130.41 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
....++.+|..+...|++++|++.|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..+++++|.+|
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHhh
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTN------------KRASLSADRLRKV 578 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~------------~~~~~~l~~l~~~ 578 (580)
..+|++++|+++|+++++++|++ ..++..++.+...
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999883 5677777776543
No 73
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.37 E-value=2.2e-12 Score=109.77 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=89.7
Q ss_pred hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
.+...+...+...+..+|.+...++.+|.++++.|++++|+..|+++++++|++..+|+++|.+|..+|++++|+++|++
T Consensus 27 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED 106 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555556666778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHH
Q 008025 524 AINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 524 al~l~p~~~~a~~~lg~~~ 542 (580)
+++++|++..++.+++.++
T Consensus 107 al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 107 ALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHC
T ss_pred HHHHCcCCHHHHHHHHHhc
Confidence 9999999999999998764
No 74
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=1.7e-11 Score=114.44 Aligned_cols=114 Identities=16% Similarity=0.026 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--cCCCCHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAIN--LDKKNVKAYLRR 538 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--l~p~~~~a~~~l 538 (580)
.....++.+|..+...|++++|++.|+++++.+|++..++..+|.++... |++++|++.++++++ .+|.+..+++++
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555 555555555555555 333344455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
|.++...|++++|+++|+++++.+|++..++..++.+
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 5555555555555555555555555555444444443
No 75
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.37 E-value=8.4e-12 Score=116.12 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
.....++.+|..++..|+|++|+..|++++ +| ++.+++++|.+|..+|++++|+++|+++++++|++..+++++|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 456678999999999999999999999995 34 789999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHhh
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTNK----------------RASLSADRLRKV 578 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~l~~~ 578 (580)
|..+|++++|+++|++++++.|++. .++..++.+...
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 9999999999999999999998877 888888876543
No 76
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.37 E-value=9.6e-12 Score=126.13 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=71.6
Q ss_pred ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------------------
Q 008025 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------------------------------------- 496 (580)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------------------------------------- 496 (580)
......|.....++.+|..+...|++++|+..|+++++++|+
T Consensus 124 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333444555555666666666666666666666666554332
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 497 --------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 497 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
++.+++++|.+|..+|++++|+++|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..+
T Consensus 204 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 445555556666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHh
Q 008025 569 SLSADRLRK 577 (580)
Q Consensus 569 ~~~l~~l~~ 577 (580)
+..++.+..
T Consensus 284 ~~~l~~~~~ 292 (365)
T 4eqf_A 284 RYNLGISCI 292 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555543
No 77
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.37 E-value=1.1e-11 Score=118.41 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--LDKKNVKAYLRR 538 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~l 538 (580)
+.....++.+|..+...|++++|++.|+++++.+|++..+++.+|.+|...|++++|+++++++++ .+|.+..+++.+
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence 334444455555555555555555555555555555555555555555555555555555555554 444444455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
|.++..+|++++|+++|+++++++|++..++..++.+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 5555555555555555555555555554444444443
No 78
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=1.3e-11 Score=104.70 Aligned_cols=113 Identities=30% Similarity=0.415 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
..++.+|..++..|++++|+..|+++++.+|++...++.++.++...+++++|++.++++++.+|++..+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.|++++|++.++++++..|++..++..++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999988887654
No 79
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.36 E-value=8.5e-12 Score=127.76 Aligned_cols=122 Identities=21% Similarity=0.162 Sum_probs=93.3
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
.....|+....+..+|..+.+.|++++|++.|+++++++|+++.+++++|.++.+.|++++|++.|+++++++|++..++
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 33445666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+++|.++...|++++|++.|+++++++|++..++..++.+..
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777776654
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=4.7e-12 Score=122.22 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VK 533 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~ 533 (580)
++..+..++.+|..+++.|+|++|+..|+++++.+|++ ..+++.+|.+|+++|++++|++.|+++++++|++ ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45678899999999999999999999999999999999 9999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 534 AYLRRGTAREM--------LGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 534 a~~~lg~~~~~--------~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
+++.+|.++.. +|++++|++.|+++++++|++..+...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 136 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA 136 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence 89999999999 999999999999999999998777633
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.36 E-value=5.3e-12 Score=114.14 Aligned_cols=134 Identities=11% Similarity=0.022 Sum_probs=113.7
Q ss_pred hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 008025 444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-ESGSFLQAEADCT 522 (580)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~ 522 (580)
.+...+...+......+|++..+++.+|.++...|++++|+..|+++++.+| ++..+..++.+.+ ..++..+|++.++
T Consensus 20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 98 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLE 98 (176)
T ss_dssp TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHH
Confidence 3444455556666777899999999999999999999999999999999999 8887777665543 3334456899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhh
Q 008025 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLRKV 578 (580)
Q Consensus 523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~ 578 (580)
++++++|+++.+++++|.++..+|++++|+..|+++++++|+. ..++..++.+...
T Consensus 99 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 99 QELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975 5688888877654
No 82
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.35 E-value=8.8e-12 Score=123.87 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=115.6
Q ss_pred cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCT 522 (580)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~ 522 (580)
.+.......|.....++.+|..+...|++++|+..|+++++.. |....+++++|.+|..+|++++|+++++
T Consensus 181 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3334444557778899999999999999999999999999986 6778899999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+..
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998763
No 83
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.35 E-value=1.9e-11 Score=116.85 Aligned_cols=114 Identities=19% Similarity=0.158 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
.....+..+|..++..|++++|++.|+++++ ..|.+..+++.+|.+|..+|++++|+++++++++.+|++..+++.+|
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 3444555555555555555555555555555 44555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
.++..+|++++|++.|+++++..|++..++..+..+
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 218 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL 218 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 555555555555555555555555555555444443
No 84
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=1.4e-11 Score=119.16 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
....++.+|.++...|++++|++.|+++++++|++..++..+|.+|..+|++++|+++|+++++++|++..+++++|...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999555
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+..+++++|+++|+++++++|++..++..++.+...
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 566699999999999999999999999888887654
No 85
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.34 E-value=2.4e-11 Score=113.41 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=112.0
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..+.....++.+|..++..|++++|++.|+++++.+|++..+++.+|.+|...|++++|++.++++++++|++..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHhh
Q 008025 539 GTAREML-GYYKEAIEDFSYALV--LEPTNKRASLSADRLRKV 578 (580)
Q Consensus 539 g~~~~~~-g~~~~A~~~~~~al~--l~p~~~~~~~~l~~l~~~ 578 (580)
|.++... |++++|+++|+++++ ..|.+..++..++.+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 9999999 999999999999999 677778888888876543
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.5e-11 Score=110.84 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
......++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|++.++++++.+|++..+++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++...|++++|.++++++++++|++..++..++.+...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877543
No 87
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=2.7e-12 Score=124.23 Aligned_cols=122 Identities=12% Similarity=0.054 Sum_probs=109.4
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p 529 (580)
......+|.....++.+|.+++..|+|++|++.|+++++ .|.+ ..+++.+|.+|..+|++++|+++|+++++++|
T Consensus 27 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 105 (272)
T 3u4t_A 27 NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT 105 (272)
T ss_dssp HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 333444566677899999999999999999999999999 4443 45699999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHH
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD-RLR 576 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~-~l~ 576 (580)
++..+++++|.++..+|++++|+++|+++++++|++..++..++ .+.
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 543
No 88
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=8e-13 Score=109.06 Aligned_cols=95 Identities=24% Similarity=0.350 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYL 536 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~ 536 (580)
.+..++.+|..++..|+|++|++.|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 008025 537 RRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 537 ~lg~~~~~~g~~~~A~~~~~~ 557 (580)
++|.++..+|++++|++.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998888776654
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.34 E-value=3.5e-12 Score=125.25 Aligned_cols=124 Identities=9% Similarity=-0.055 Sum_probs=87.5
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
....+|++..+++.+|.++...|++++|+..|+++++.+|+....+...+..+...++.++|++.|+++++++|++..++
T Consensus 143 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~ 222 (287)
T 3qou_A 143 AWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALA 222 (287)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHH
Confidence 33344444555555555555555555555555555555554444444444444455555556677777788899999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLRKVF 579 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~ 579 (580)
+++|.+|...|++++|++.|+++++++|++ ..++..++.+.+.+
T Consensus 223 ~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 223 TQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 999999999999999999999999999998 88999998887654
No 90
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.33 E-value=2e-12 Score=113.50 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
++-..|+++++++|++..+++++|.+++..|+|++|++.|+++++++|+++.+|+++|.++..+|++++|+++|++++++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 008025 562 EPTNKRASLSADRLRKV 578 (580)
Q Consensus 562 ~p~~~~~~~~l~~l~~~ 578 (580)
+|+++.++..++.+...
T Consensus 85 ~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp STTCTHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99999999999987654
No 91
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.33 E-value=1.8e-11 Score=121.40 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
+.....+..+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|++.++++++++|++..+++.+|.
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHhh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPT------------NKRASLSADRLRKV 578 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~l~~l~~~ 578 (580)
++..+|++++|+++|++++++.|+ +..++..++.+...
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 999999999999999999999999 78899888887654
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.33 E-value=1.8e-11 Score=115.48 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLE------------------SGSFLQAEADC 521 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~---~~~~la~~~~~------------------~~~~~~A~~~~ 521 (580)
...+++.+|.++++.|+|++|+..|+++++.+|++.. +++.+|.++.. +|++++|++.|
T Consensus 40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence 4578999999999999999999999999999999864 89999999987 57899999999
Q ss_pred HHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHhh
Q 008025 522 TKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRLRKV 578 (580)
Q Consensus 522 ~~al~l~p~~~~a~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~ 578 (580)
+++++.+|++..++ +.+|.+|.+.|++++|+..|+++++..|+++ .++..++.+...
T Consensus 120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 99999999987554 6789999999999999999999999999987 567777766544
No 93
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.32 E-value=2.3e-11 Score=120.82 Aligned_cols=122 Identities=16% Similarity=-0.015 Sum_probs=113.4
Q ss_pred chhchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
....|.....++.+|..++..| ++++|+..|+++++++|++..++..+|.++..+|++++|++.++++++++|++..++
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 162 (330)
T 3hym_B 83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162 (330)
T ss_dssp HHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence 3345677889999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+.+|.++...|++++|+++|+++++++|++..++..++.+...
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887543
No 94
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=1.5e-11 Score=132.92 Aligned_cols=126 Identities=12% Similarity=-0.022 Sum_probs=114.0
Q ss_pred HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
...+...+.+....+|++...++.+|..+...|++++|++.|+++++++|++..+++++|.+|.++|++++|++.|++++
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 118 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444555556778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 526 NLDKKNVKAYLRRGTAREML---GYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 526 ~l~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
+++|++..+++++|.++..+ |++++|.+.|+++++.+|++...+..
T Consensus 119 ~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 119 QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHH
Confidence 99999999999999999999 99999999999999999987655543
No 95
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.31 E-value=4.2e-11 Score=117.71 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=73.4
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH-HHH
Q 008025 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE-AIE 553 (580)
Q Consensus 475 ~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~-A~~ 553 (580)
...|++++|+..|+++++.+|+++.+++++|.++.++|++++|++.|+++++++|+++.+++++|.++..+|++++ +.+
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3446777777777777777777777777777777777777777777777777777777777777777777777765 456
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 008025 554 DFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 554 ~~~~al~l~p~~~~~~~~l~ 573 (580)
+++++++++|+++.+.....
T Consensus 257 ~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 257 YLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHH
Confidence 77777777777777665443
No 96
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.31 E-value=5.8e-11 Score=119.19 Aligned_cols=113 Identities=18% Similarity=0.269 Sum_probs=105.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT----YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
...+|..+++.|++++|+..|+++++..|++.. .+..+|.++.++|++++|++.|+++++++|+++.+++.+|.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345699999999999999999999999999874 4678999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
..+|++++|+++|+++++++|++..++..+..+.+.+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887654
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.31 E-value=1.6e-11 Score=115.84 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AYL 536 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~ 536 (580)
.+..++.+|..+++.|+|++|+..|+++++..|++ ..+++.+|.+|+++|++++|++.|+++++++|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35678999999999999999999999999999886 479999999999999999999999999999999864 899
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025 537 RRGTAREM------------------LGYYKEAIEDFSYALVLEPTNKRASLSAD 573 (580)
Q Consensus 537 ~lg~~~~~------------------~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 573 (580)
.+|.++.. +|++++|++.|+++++.+|++..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~ 137 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK 137 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 99999987 57899999999999999999987665433
No 98
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.31 E-value=2.3e-11 Score=101.28 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+|++.|+++++.+|++..+++++|.+|..+|++++|+++|+++++++|++..+|+++|.+|..+|++++|+++|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHH
Q 008025 562 EPT--NKRASLSADRL 575 (580)
Q Consensus 562 ~p~--~~~~~~~l~~l 575 (580)
.|+ +......+...
T Consensus 83 ~~~~~~~~~~~~l~~~ 98 (115)
T 2kat_A 83 AQSRGDQQVVKELQVF 98 (115)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHH
Confidence 884 44555444443
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.30 E-value=4e-11 Score=117.87 Aligned_cols=118 Identities=9% Similarity=-0.088 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA--YLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
+.+...+..+|.++.+.|++++|++.|+++++.+|++.......+++ +...|++++|+..|+++++.+|+++.+++++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 46678899999999999999999999999999999986554444433 3344899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
|.++..+|++++|+++|+++++++|+++.++.+++.+...
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876543
No 100
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.29 E-value=4e-11 Score=125.01 Aligned_cols=121 Identities=26% Similarity=0.269 Sum_probs=110.2
Q ss_pred ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008025 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA 534 (580)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a 534 (580)
.....+|.++..++.+|..+++.|+|++|+..|+++++.+|++..+++.+|.+|..+|++++|+++|+++++++|++..+
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 96 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA 96 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 008025 535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRL 575 (580)
Q Consensus 535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~l 575 (580)
++.+|.+|..+|++++|++.|+++++++|++. .++..+..+
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 99999999999999999999999999999998 777766443
No 101
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.28 E-value=5.6e-11 Score=119.31 Aligned_cols=120 Identities=16% Similarity=0.070 Sum_probs=69.5
Q ss_pred chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNR------------AAAYLESGSFLQAEADC 521 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~ 521 (580)
....|.....++.+|..+...|++++|+..|+++++.+| ++..++..+ |.++...|++++|++.+
T Consensus 64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333444455555555555555555555555555555555 555555444 45555555555555555
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 522 ~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+++++.+|++..+++.+|.++..+|++++|++.++++++++|++..++..++.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 144 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555566666666666666666666666666666666666666666555544
No 102
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.26 E-value=1.2e-10 Score=117.72 Aligned_cols=124 Identities=11% Similarity=0.049 Sum_probs=77.2
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------------------------------
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------------------------------------- 496 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------------------------------------- 496 (580)
.......|.....+..+|..+...|++++|++.|++++++.|+
T Consensus 122 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 201 (368)
T 1fch_A 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVK 201 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHH
Confidence 3333444555566666666666666666666666666655443
Q ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 497 --------------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 497 --------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
+..+++++|.+|...|++++|++.|+++++++|++..+++++|.++..+|++++|+++|+++++++
T Consensus 202 ~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 202 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345556666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHh
Q 008025 563 PTNKRASLSADRLRK 577 (580)
Q Consensus 563 p~~~~~~~~l~~l~~ 577 (580)
|++..++..++.+..
T Consensus 282 ~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 282 PGYIRSRYNLGISCI 296 (368)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 666666666665543
No 103
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.26 E-value=1.1e-10 Score=112.72 Aligned_cols=117 Identities=16% Similarity=0.067 Sum_probs=103.3
Q ss_pred ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
..+.......|.....++.+|..+...|++++|++.|+++++++|++..+++.+|.+|..+|++++|++.++++++++|+
T Consensus 64 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 33344444566778899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CH----------------------------------------------------------------------HHHHHHHH
Q 008025 531 NV----------------------------------------------------------------------KAYLRRGT 540 (580)
Q Consensus 531 ~~----------------------------------------------------------------------~a~~~lg~ 540 (580)
+. .+++.+|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 64 56788899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
++..+|++++|+.+|+++++++|++..
T Consensus 224 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 224 YYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 999999999999999999999997755
No 104
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.26 E-value=9.2e-11 Score=122.26 Aligned_cols=111 Identities=18% Similarity=0.273 Sum_probs=104.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
..+|..+++.|++++|+..|+++++..|++. ..+..+|.++.++|++++|++.++++++++|++..+|+.+|.++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4449999999999999999999999999985 488999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 544 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 544 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
..|++++|+++|+++++++|+++.++..++.+...
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999976543
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.26 E-value=8.4e-11 Score=104.20 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=99.6
Q ss_pred hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
+...+.......+.....++.+|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+++|+++++++
T Consensus 32 A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 32 AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33334444455677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhh
Q 008025 529 KKNVKAYLRRGTA--REMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 529 p~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l 561 (580)
|++..++..++.+ +...|++++|++.+++..++
T Consensus 112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999988555554 88899999999999988765
No 106
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=1.4e-11 Score=111.18 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=96.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCH--
Q 008025 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA-REMLGYY-- 548 (580)
Q Consensus 472 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~-~~~~g~~-- 548 (580)
..++..|++++|+..|+++++.+|++..+++.+|.+|...|++++|+++|+++++++|++..+++++|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 549 KEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 549 ~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++|+++|+++++++|++..++..++.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 127 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFM 127 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999887643
No 107
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.25 E-value=8.3e-11 Score=92.92 Aligned_cols=85 Identities=34% Similarity=0.476 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
.....++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..++++++|+++++++++++|++..+++++|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcC
Q 008025 542 REMLG 546 (580)
Q Consensus 542 ~~~~g 546 (580)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76654
No 108
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.25 E-value=1.4e-11 Score=106.99 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 485 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 485 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
..|+++++++|++...++.+|.+++..|++++|++.|+++++++|+++.+|+++|.++..+|++++|+++|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhh
Q 008025 565 NKRASLSADRLRKV 578 (580)
Q Consensus 565 ~~~~~~~l~~l~~~ 578 (580)
++.++..++.+...
T Consensus 85 ~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 85 EPRFPFHAAECHLQ 98 (142)
T ss_dssp CTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999987654
No 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=7.8e-11 Score=118.37 Aligned_cols=98 Identities=19% Similarity=0.132 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
...++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++++++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHH-HHHHHHHHhh
Q 008025 544 MLGYYKEA-IEDFSYALVL 561 (580)
Q Consensus 544 ~~g~~~~A-~~~~~~al~l 561 (580)
.++++++| .+.|++.+..
T Consensus 276 ~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 99999999 5567766644
No 110
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.24 E-value=1.1e-10 Score=126.57 Aligned_cols=123 Identities=17% Similarity=0.124 Sum_probs=107.9
Q ss_pred ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
......+.+...+..++..+.+.|++++|++.|+++++. +|++ ..+|..++.+|.+.|++++|++.+++++++
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 333445567788899999999999999999999999988 5554 788999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+|++..+|+.+|.+|...|++++|+++|+++++++|+++.++..++.+..
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998887653
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=3.8e-11 Score=117.79 Aligned_cols=118 Identities=12% Similarity=0.023 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
|.....++.+|..+...|++++|+..|+++++++|++..+++++|.+|..+|++++|++.++++++.+|++...+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.+...++.++|++.|+++++++|++..++..++.+...
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999988654
No 112
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.22 E-value=1.9e-11 Score=106.22 Aligned_cols=76 Identities=17% Similarity=0.123 Sum_probs=69.9
Q ss_pred chhchHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQW----------LKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----------SFL 515 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~----------~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~ 515 (580)
...+|++++.|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+| +++
T Consensus 29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~ 108 (158)
T 1zu2_A 29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD 108 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence 335678999999999999999876 59999999999999999999999999999885 899
Q ss_pred HHHHHHHHHHHcCCCCH
Q 008025 516 QAEADCTKAINLDKKNV 532 (580)
Q Consensus 516 ~A~~~~~~al~l~p~~~ 532 (580)
+|+++|++|++++|++.
T Consensus 109 eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 109 LATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCCH
Confidence 99999999999999975
No 113
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=1.1e-10 Score=114.90 Aligned_cols=116 Identities=13% Similarity=0.078 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC--
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN-- 531 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p~~-- 531 (580)
...+..+.++|.++.+.|++++|+.+|++++++.+.. ..++.++|.+|... |++++|+++|++++++.|.+
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 3457899999999999999999999999999997653 56899999999996 99999999999999998754
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHH
Q 008025 532 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR-------ASLSADRLR 576 (580)
Q Consensus 532 ----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~~~l~~l~ 576 (580)
..++.++|.++..+|+|++|+++|++++++.|++.. .+..++.+.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999998754 445555544
No 114
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.19 E-value=3.1e-11 Score=97.43 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=84.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
.+.+|..+++.|+|++|+..|+++++.+|++.. +++++|.+|..+|++++|+++|+++++++|++..++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 367899999999999999999999999999999 99999999999999999999999999999999998865
Q ss_pred CCHHHHHHHHHHHHhhCCCCH
Q 008025 546 GYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 546 g~~~~A~~~~~~al~l~p~~~ 566 (580)
+.+.++..+|+++++.+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 667888999999888888764
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.19 E-value=3e-10 Score=111.55 Aligned_cols=130 Identities=10% Similarity=-0.088 Sum_probs=119.5
Q ss_pred hhccccccchhchHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHH
Q 008025 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAY----LES---GSFLQAEA 519 (580)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~A~~ 519 (580)
+.......+..+|+...+|+.++.++...+ +++++++.+++++..+|++..+|+.++.++ ..+ ++++++++
T Consensus 52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 334445566788999999999999999999 999999999999999999999999999999 777 78999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYK--EAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 520 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+++++++.+|+|..+|++++.++..+++++ +++++++++++++|.|..+|.+.+.+...
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 99999999999999999999988877543
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=2.5e-11 Score=109.69 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
...+.++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|++.++++++++| ++..+..++.+
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999 88777666655
Q ss_pred HH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 542 RE-MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 542 ~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.. ..++..+|++.|+++++++|++..++..++.+...
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~ 120 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33 33344568999999999999999999999987654
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=2.2e-10 Score=122.97 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=120.2
Q ss_pred ccccccchhchHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 008025 451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAE 518 (580)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~ 518 (580)
......+..+|+...+|+.++.++.+.++ ++++++.|+++++.+|++..+|+.+++++.+++ ++++++
T Consensus 50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el 129 (567)
T 1dce_A 50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHH
Confidence 34455667789999999999999999998 999999999999999999999999999999999 779999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 519 ADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 519 ~~~~~al~l~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++++++++++|+|..+|++++.++..++ .+++++++++++++.+|+|..+|.+.+.+...
T Consensus 130 ~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 9999999999999999999999999999 99999999999999999999999999987654
No 118
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=2e-10 Score=112.93 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008025 462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK- 533 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~- 533 (580)
..+..+.++|.++... |++++|+.+|++++++.|.+ ..++.++|.+|..+|+|++|+++|++++++.|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 3467889999999996 99999999999999998754 568999999999999999999999999999987643
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 534 ------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 534 ------a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
+++++|.++..+|++++|+.+|+++++++|+....
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 68999999999999999999999999999987654
No 119
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.17 E-value=2.1e-10 Score=122.37 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=108.0
Q ss_pred cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
.....|. ...++.+|..++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|++.|+++++++|++..++
T Consensus 269 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 269 SINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred HHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3334455 678888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+.+|.++..+|++++|++.|+++++++|++..++..++.+...
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888877543
No 120
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.17 E-value=1.8e-10 Score=93.43 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=61.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 008025 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASL 570 (580)
Q Consensus 493 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~ 570 (580)
.+|+++.+++++|.+|+.+|++++|+++|+++++++|++..+|+++|.+|..+|++++|++.|++++++.|+ +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 367788888888888888888888888888888888888888888888888888888888888888877653 344444
Q ss_pred HHHHH
Q 008025 571 SADRL 575 (580)
Q Consensus 571 ~l~~l 575 (580)
.+..+
T Consensus 82 ~l~~~ 86 (100)
T 3ma5_A 82 ELQDA 86 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 121
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=3.2e-10 Score=112.29 Aligned_cols=111 Identities=10% Similarity=-0.117 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
+|..+|..+.+.|++++|+..|+++++..|.+...|...+...+. +|++++|++.|+++++++|+++.+|.+++..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554444444333222 4555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHH
Q 008025 545 LGYYKEAIEDFSYALVL---EP-TNKRASLSADRLR 576 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l---~p-~~~~~~~~l~~l~ 576 (580)
+|++++|+..|+++++. .| +....|..+..+.
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 55555555555555553 33 2444555444443
No 122
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.16 E-value=1.6e-10 Score=114.45 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=101.9
Q ss_pred HH-HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025 471 GN-QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (580)
Q Consensus 471 g~-~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 549 (580)
+. .+...|++++|+..|+++++.+|++..++..+|.+|...|++++|++.++++++++|++..+++.+|.++...|+++
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 44 58889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 550 EAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 550 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|++.|+++++++|++..++..++.+...
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 123
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.16 E-value=5.6e-10 Score=120.91 Aligned_cols=120 Identities=15% Similarity=0.023 Sum_probs=110.7
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
...+.+...+..+|..+.+.|++++|++.|+++++++|++..+|+.++.+|.+.|++++|++.|+++++.+|++..+|+.
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++.+|.+.|++++|++.|+++++++|+++.++..++.+..
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999988887654
No 124
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.3e-10 Score=119.95 Aligned_cols=106 Identities=32% Similarity=0.473 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
.+.+..++.+|+.+++.|+|++|+..|+++++.+| +..+++.+|.+|.++|++++|+++|+++++++|++..+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35788999999999999999999999999999999 68999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
++..+|++++|++.|+++++++|.+..
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999986543
No 125
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=3.6e-10 Score=89.17 Aligned_cols=84 Identities=32% Similarity=0.420 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 496 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
.+..+++.+|.++...+++++|+++|+++++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhh
Q 008025 576 RKVF 579 (580)
Q Consensus 576 ~~~~ 579 (580)
....
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7543
No 126
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.14 E-value=2.4e-10 Score=101.77 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=89.4
Q ss_pred hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
.+...+...+......+|.+...++.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+++|++
T Consensus 25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34444445555666667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHH
Q 008025 524 AINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 524 al~l~p~~~~a~~~lg~~~~~ 544 (580)
+++++|++..+|++++....+
T Consensus 105 al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 105 GIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHH
Confidence 999999999988888876543
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.7e-10 Score=94.87 Aligned_cols=101 Identities=14% Similarity=-0.004 Sum_probs=88.8
Q ss_pred HHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 445 ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
+...+...+......+|.+...++.+|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 33344444455556677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC------CCCHHHHHHHHHHHHHc
Q 008025 525 INLD------KKNVKAYLRRGTAREML 545 (580)
Q Consensus 525 l~l~------p~~~~a~~~lg~~~~~~ 545 (580)
++++ |++..++..++.+...+
T Consensus 99 l~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 99 RTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999 99999999888877553
No 128
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=3.5e-10 Score=109.30 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 527 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---- 527 (580)
.+.....+..+|..++..|++++|+..|++++++. |....++.++|.+|..+|++++|+++|++++++
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999883 556789999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhh
Q 008025 528 ----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL--------EPTNKRASLSADRLRKV 578 (580)
Q Consensus 528 ----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~~ 578 (580)
+|....+++++|.++..+|++++|+++|++++++ .|....++..++.+...
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999 67777788888877543
No 129
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.13 E-value=3.5e-11 Score=126.85 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
+|.....++++|.++++.|+|++|++.|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++.+++
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q 008025 540 TA--REMLGYYKEAIEDFS-----------YALVLEPTN 565 (580)
Q Consensus 540 ~~--~~~~g~~~~A~~~~~-----------~al~l~p~~ 565 (580)
.+ +..+|++++|++.++ ++++++|+.
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 98 889999999999999 888887764
No 130
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=3.3e-10 Score=112.25 Aligned_cols=131 Identities=10% Similarity=-0.025 Sum_probs=106.6
Q ss_pred hhhccccccch-hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 448 ATKSKLSTNTF-NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 448 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
.+...+..... ..|+....|..+|..+.+.|++++|++.|++++++.|.+.. +|.+++.++...|++++|++.|++++
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444455555 46778888888999998999999999999999998888876 88889999888999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 526 NLDKKNVKAYLRRGTAREM-LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 526 ~l~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+.+|.+...|...+..... .|++++|++.|+++++++|+++.++..++.+...
T Consensus 162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9888888887766665443 6899999999999999999999888888876543
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.12 E-value=5.6e-10 Score=94.07 Aligned_cols=97 Identities=16% Similarity=0.020 Sum_probs=89.0
Q ss_pred cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
.+.......+.....++.+|.+++..|++++|+..|+++++.+|++..+++.+|.++..+|++++|+++++++++++|++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 34 FYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 33344445567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCH
Q 008025 532 VKAYLRRGTAREMLGYY 548 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~ 548 (580)
..+++.++.++..+|++
T Consensus 114 ~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 114 ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 99999999999998875
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.12 E-value=3.8e-10 Score=95.70 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=88.9
Q ss_pred hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
+...+.......+.....++.+|.+++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|+++++++++++
T Consensus 35 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 35 AMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 33333444445667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 008025 529 KKNVKAYLRRGTAREMLGY 547 (580)
Q Consensus 529 p~~~~a~~~lg~~~~~~g~ 547 (580)
|++..+++.++.++..+|+
T Consensus 115 p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 115 SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp GGGTHHHHHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHHhcC
Confidence 9999999999999988764
No 133
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=7.1e-10 Score=116.44 Aligned_cols=113 Identities=17% Similarity=0.070 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD----- 528 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~----- 528 (580)
.+..+..+|.++..+|+|++|+++|++++++ +|.....|.++|.+|..+|++++|+.++++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3455666777777777777777777777765 45556677777777777777777777777777662
Q ss_pred ---CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 529 ---KKNVKAYLRRGTAREMLG--YYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 529 ---p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
+..+..+.++|.++...+ +|++|+++|+++++++|+++.++..++.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345667777776666543 57777777777777777777777666554
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.11 E-value=7.2e-10 Score=106.46 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=105.9
Q ss_pred HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
...+...+.......|.+. ..+.+|..+++.++|++|+..|+++++..++. ..+++++|.++..+|++++|+.+|++
T Consensus 118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~ 196 (282)
T 4f3v_A 118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTE 196 (282)
T ss_dssp HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333444444445567777 99999999999999999999999887653221 35899999999999999999999999
Q ss_pred HHHcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 524 AINLD--KK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 524 al~l~--p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
++... |. ...+++++|.++.++|+.++|.+.|++++..+|+ ..++..|..
T Consensus 197 a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 197 ANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99655 55 6679999999999999999999999999999999 888777653
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.11 E-value=3.1e-10 Score=96.50 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHH
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK-------RAS 569 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------~~~ 569 (580)
.+.++.++|.++++.|+|++|+++|+++++++|+++.+|+++|.+|..+|+|++|+++|+++++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999999998764 355
Q ss_pred HHHHHHHh
Q 008025 570 LSADRLRK 577 (580)
Q Consensus 570 ~~l~~l~~ 577 (580)
..++.+..
T Consensus 87 ~~lg~~~~ 94 (127)
T 4gcn_A 87 SRAGNAFQ 94 (127)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=7.2e-10 Score=109.99 Aligned_cols=129 Identities=9% Similarity=-0.114 Sum_probs=119.6
Q ss_pred hccccccchhchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHH
Q 008025 450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-G-SFLQAEADCTKAIN 526 (580)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~ 526 (580)
.......+..+|+...+|+.++.++...+ +++++++.+++++..+|++..+|+.++.++..+ + ++++++++++++++
T Consensus 74 L~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~ 153 (349)
T 3q7a_A 74 LELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL 153 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 34445566778999999999999999999 599999999999999999999999999999998 8 89999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 527 LDKKNVKAYLRRGTAREMLGYYK--------EAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 527 l~p~~~~a~~~lg~~~~~~g~~~--------~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++|+|..+|+.++.++.++++++ +++++++++++++|.|..+|.+.+.+...
T Consensus 154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999888 99999999999999999999999887654
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=5.6e-10 Score=109.64 Aligned_cols=121 Identities=13% Similarity=-0.003 Sum_probs=113.5
Q ss_pred hchHHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCC
Q 008025 459 NQKQSAEIAKEKGNQA----YKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--QAEADCTKAINLDK 529 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~----~~~---g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~l~p 529 (580)
.+|+...+|+.++.++ ... ++++++++.++++++.+|++..+|+.++.+...+++++ +++++++++++.+|
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 4678889999999999 666 79999999999999999999999999999999999998 99999999999999
Q ss_pred CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 530 KNVKAYLRRGTAREMLGY------YKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
.|..+|++++.++..+++ +++++++++++++++|+|..+|..+..+...+
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF 233 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 999999999999999988 99999999999999999999999999887543
No 138
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.10 E-value=2e-09 Score=106.38 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=115.9
Q ss_pred cccchhchHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADC 521 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~ 521 (580)
...+..+|+...+|+.++.++...++ +++++..+++++..+|++..+|+.+++++..+++ ++++++++
T Consensus 54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 133 (331)
T 3dss_A 54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 133 (331)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 44556789999999999999988776 7999999999999999999999999999999994 99999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 522 TKAINLDKKNVKAYLRRGTAREMLGY-YKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 522 ~~al~l~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+++++++|.|..+|++++.++...+. ++++++++.++++.+|.|..+|.+.+.+...
T Consensus 134 ~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 134 ARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6999999999999999999999999887654
No 139
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.09 E-value=6.7e-10 Score=91.17 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASL 570 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~ 570 (580)
+...++++|.+++..|+|++|++.|+++++++|+++.+++++|.++..+|++++|+++|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred HHHHHHhh
Q 008025 571 SADRLRKV 578 (580)
Q Consensus 571 ~l~~l~~~ 578 (580)
.++.+...
T Consensus 83 ~~~~~~~~ 90 (111)
T 2l6j_A 83 RLELAQGA 90 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 140
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.09 E-value=1.6e-09 Score=115.53 Aligned_cols=115 Identities=23% Similarity=0.206 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
.+..++.+|..+...|++++|+..|+++++.+|+ ..+++.+|.++...|++++|++.|+++++++|++..+++.+|.++
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 4667899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
...|++++|++.|+++++++|++..++..++.+...
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887643
No 141
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.09 E-value=2.2e-09 Score=103.95 Aligned_cols=111 Identities=23% Similarity=0.178 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCH
Q 008025 461 KQSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNV 532 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~ 532 (580)
+....+++.+|..+.. .+++++|+..|+++++++ +..+++++|.+|.. .+++++|+++|+++++.+ ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 5667889999999999 999999999999999885 78999999999999 999999999999999974 89
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 533 KAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 533 ~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.+++++|.+|.. .+++++|+++|+++++++ +..++..++.+..
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 999999999999 999999999999999976 6788888887754
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=3.9e-10 Score=121.01 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=114.7
Q ss_pred chhchHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~ 533 (580)
...+|+...+|+.++.++.+.+ +|+++++.++++++++|.+..+|+.++.+..+++ .+++++++++++|+.+|+|..
T Consensus 100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s 179 (567)
T 1dce_A 100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence 3456899999999999999999 7799999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 534 AYLRRGTAREML--------------GYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 534 a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|++++.++..+ +++++++++++++++++|++..+|.+++.+...
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 999999999986 668999999999999999999999999988653
No 143
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.09 E-value=2.7e-10 Score=95.22 Aligned_cols=83 Identities=16% Similarity=0.025 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg 539 (580)
+|.....++.+|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|++.++++++++|+++.......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999988765443
Q ss_pred HHH
Q 008025 540 TAR 542 (580)
Q Consensus 540 ~~~ 542 (580)
.+.
T Consensus 103 ai~ 105 (117)
T 3k9i_A 103 AIL 105 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 144
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=9.5e-10 Score=115.44 Aligned_cols=117 Identities=14% Similarity=0.020 Sum_probs=95.3
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcC
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESG--SFLQAEADCTKAINLD 528 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~l~ 528 (580)
.++..+..+.++|.+++..|+|++|+.+|++++++. +..+..+.++|.++...+ +|++|+++|+++++++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 345667788889999999999999999999988763 345788888888887664 6889999999999999
Q ss_pred CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 529 KKNVKAYLRRGTARE---MLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 529 p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
|+++.++..++.++. ..+++++|++.|+++++++|++..++..++..
T Consensus 169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence 999998888888855 45677888889999999999888888777654
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.08 E-value=4.8e-10 Score=99.52 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRR 538 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~l 538 (580)
++.....++++|.++++.|+|++|+..|+++++++|++..+|+.+|.+|..+|++++|+++|+++++++|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999998 667777
Q ss_pred HHHHHHcCCHH
Q 008025 539 GTAREMLGYYK 549 (580)
Q Consensus 539 g~~~~~~g~~~ 549 (580)
+.+...++++.
T Consensus 139 ~~~~~~~~~~~ 149 (162)
T 3rkv_A 139 KIVTERRAEKK 149 (162)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77776655443
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.08 E-value=5.4e-10 Score=102.84 Aligned_cols=97 Identities=18% Similarity=0.116 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
...++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..++.++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHH-HHHHHHHh
Q 008025 544 MLGYYKEAI-EDFSYALV 560 (580)
Q Consensus 544 ~~g~~~~A~-~~~~~al~ 560 (580)
.+++++++. ..|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999988887 44444443
No 147
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.08 E-value=3.2e-10 Score=120.12 Aligned_cols=118 Identities=18% Similarity=0.117 Sum_probs=108.2
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLE---SGSFLQAEADCTKAINLDK 529 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~l~p 529 (580)
..+.....++.+|..+...|++++|+..|+++++..|++.. +++.+|.++.. +|++++|++.|+++++++|
T Consensus 367 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 34556678999999999999999999999999999988755 99999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
++..+++.+|.++..+|++++|.++|+++++++|+++.++..+..+.
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776554
No 148
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.07 E-value=1e-09 Score=94.23 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=93.5
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 008025 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKEAI 552 (580)
Q Consensus 478 g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~~~lg~~~~~~g~~~~A~ 552 (580)
.....+.+.|++.++.++.+.++.+++|+++.+.+ ++++++..+++.++.+ | ++.+++|++|..++++++|++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34567788899999989999999999999999998 6779999999999998 7 67899999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 553 EDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 553 ~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
++++++++++|+|..+......+.+.+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888764
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.07 E-value=5.3e-10 Score=117.24 Aligned_cols=92 Identities=18% Similarity=0.141 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
....++++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|+.+++|++|+++|+++++++|++..++.+++.++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHH
Q 008025 543 EMLGYYKEAIED 554 (580)
Q Consensus 543 ~~~g~~~~A~~~ 554 (580)
..+++++++.+.
T Consensus 396 ~~~~~~~~a~~~ 407 (457)
T 1kt0_A 396 KKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 150
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=6.1e-10 Score=107.58 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 527 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---- 527 (580)
.+.....+..+|.++...|++++|++.|++++++ +|....++.++|.+|..+|++++|++++++++++
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999998 4667889999999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 528 ----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 528 ----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+|....+++++|.++..+|++++|+++|++++++
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999999987
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=2.1e-10 Score=112.16 Aligned_cols=128 Identities=13% Similarity=0.005 Sum_probs=104.4
Q ss_pred HhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
..+...+......+|.+...++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++++
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444455556788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCH-----HHH--------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 527 LDKKNV-----KAY--------------------------LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 527 l~p~~~-----~a~--------------------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
++|++. ..+ ..++. +..|++++|++.++++++++|++......+..+
T Consensus 101 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (281)
T 2c2l_A 101 LAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDGHIRAQQACI 178 (281)
T ss_dssp HHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHH
T ss_pred hCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchhhhhhHHHHH
Confidence 988652 111 11222 236889999999999999999987777666554
Q ss_pred H
Q 008025 576 R 576 (580)
Q Consensus 576 ~ 576 (580)
.
T Consensus 179 ~ 179 (281)
T 2c2l_A 179 E 179 (281)
T ss_dssp H
T ss_pred H
Confidence 3
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.06 E-value=1.3e-09 Score=91.65 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
..++.+|.++++.|++++|++.|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999887643
No 153
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.06 E-value=9.5e-11 Score=117.82 Aligned_cols=103 Identities=15% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-H
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-E 543 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~ 543 (580)
..++++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..++.+++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999999884 4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHH
Q 008025 544 MLGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 544 ~~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
..++.+++.+.|++++.+.|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567889999999999999998764
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.06 E-value=2.4e-09 Score=105.80 Aligned_cols=120 Identities=12% Similarity=0.072 Sum_probs=111.6
Q ss_pred chhchHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~ 533 (580)
+..+|++..+|+.++.++.+.+ +++++++.++++++.+|.+..+|+.++.+....+. +++++++++++|+.+|.|..
T Consensus 101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S 180 (331)
T 3dss_A 101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180 (331)
T ss_dssp HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence 3456889999999999999998 49999999999999999999999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025 534 AYLRRGTAREML--------------GYYKEAIEDFSYALVLEPTNKRASLSADRLR 576 (580)
Q Consensus 534 a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 576 (580)
+|++++.++..+ +.++++++++++++.++|+|..+|.++..+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999988 5699999999999999999999998776654
No 155
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=4.4e-09 Score=101.79 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHH
Q 008025 463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKA 534 (580)
Q Consensus 463 ~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a 534 (580)
....++.+|..+.. .+++++|+..|+++++. ++..+++++|.+|.. .+++++|+++|+++++++ +..+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 148 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG 148 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence 67889999999999 99999999999999987 488999999999999 999999999999999976 7889
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 535 YLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 535 ~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++++|.+|.. .+++++|+++|+++++. +++.++..++.+...
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 9999999999 99999999999999987 467888888887653
No 156
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.05 E-value=1.3e-09 Score=110.85 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=91.5
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.++.....++++|.++++.|+|++|+++|+++++++|++..+++++|.+|..++++++|+++|+++++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 008025 539 GTAREMLGYYKEAIED 554 (580)
Q Consensus 539 g~~~~~~g~~~~A~~~ 554 (580)
+.++..+++++++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888654
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.04 E-value=2.4e-09 Score=91.54 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=81.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 492 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
..+|.++..++.+|.+++..|+|++|++.|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 008025 572 ADRLRKV 578 (580)
Q Consensus 572 l~~l~~~ 578 (580)
++.+...
T Consensus 83 l~~~~~~ 89 (137)
T 3q49_B 83 LGQCQLE 89 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.03 E-value=8.8e-10 Score=90.20 Aligned_cols=86 Identities=22% Similarity=0.304 Sum_probs=81.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 008025 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASL 570 (580)
Q Consensus 493 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~ 570 (580)
++|++...++.+|.++...|++++|++.++++++++|++..+++++|.++..+|++++|+++|+++++++|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368888999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhh
Q 008025 571 SADRLRKV 578 (580)
Q Consensus 571 ~l~~l~~~ 578 (580)
.++.+...
T Consensus 81 ~l~~~~~~ 88 (112)
T 2kck_A 81 AKADALRY 88 (112)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99987654
No 159
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.02 E-value=1.3e-09 Score=107.08 Aligned_cols=119 Identities=16% Similarity=0.197 Sum_probs=105.9
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-- 528 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-- 528 (580)
..+.....+..+|..+...|++++|+..|++++++. |....+++++|.+|..+|++++|++++++++++.
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999883 5567899999999999999999999999999984
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHh
Q 008025 529 ------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL--------EPTNKRASLSADRLRK 577 (580)
Q Consensus 529 ------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~ 577 (580)
|....+++++|.++..+|++++|+++|++++++ .|....++..++.+..
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 556778999999999999999999999999998 6666777777777654
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.02 E-value=1.5e-09 Score=94.45 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 008025 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-------NVK-----AYLRRGTAREMLGYYKEAIEDFSYALVL---- 561 (580)
Q Consensus 498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al~l---- 561 (580)
...+.++|..++++|+|++|++.|+++|+++|+ +.. +|+++|.++..+|+|++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999999999 555 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHhhh
Q 008025 562 ---EPTNKRAS----LSADRLRKVF 579 (580)
Q Consensus 562 ---~p~~~~~~----~~l~~l~~~~ 579 (580)
+|++..+| ++++.+...+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~l 115 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGL 115 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHC
Confidence 99999999 9888876543
No 161
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=2e-09 Score=100.37 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC--CC
Q 008025 462 QSAEIAKEKGNQAYKDK----QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDK--KN 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g----~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p--~~ 531 (580)
.++.+++.+|..+.. + ++++|+..|+++.+ +.++.++++||.+|.. .+++++|+++|+++++..+ ++
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 456677778887777 5 78888888888754 4677788888888876 7788888888888887776 34
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 532 VKAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 532 ~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+.+++++|.+|.. .+++++|+++|++++++ +.++.+...|+.+..
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 7788888888877 77788888888888877 666667777777653
No 162
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.01 E-value=2.1e-09 Score=109.85 Aligned_cols=104 Identities=16% Similarity=0.069 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAIN-----LD 528 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~ 528 (580)
.+..+..+..+|.++...|+|++|+++|++++++.+.. ..+++++|.+|..+|++++|+++++++++ .+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 34456677777777777777777777777777764432 24677777777777777777777777777 34
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 529 -KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 529 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
|....+++++|.++..+|++++|.+++++++++.+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777777777777743
No 163
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=7.5e-09 Score=101.54 Aligned_cols=117 Identities=11% Similarity=0.008 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI---NLDKKNV 532 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~l~p~~~ 532 (580)
.....++.+|..+...|+|++|+..|+++++..+.. ..+++++|.+|..+|+|++|+++|++++ +..+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 345566779999999999999999999999875543 6789999999999999999999999999 4456543
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhh
Q 008025 533 ----KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT------NKRASLSADRLRKV 578 (580)
Q Consensus 533 ----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l~~l~~~ 578 (580)
.+++++|.+|..+|+|++|++++++++++.++ ...++..++.+...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~ 248 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999988643 16677777776543
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=5.2e-09 Score=87.16 Aligned_cols=90 Identities=31% Similarity=0.416 Sum_probs=83.5
Q ss_pred chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
....+.....++.+|..++..|++++|+..|+++++.+|.+...++.+|.+|..+|++++|++.++++++++|++..++.
T Consensus 36 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 115 (125)
T 1na0_A 36 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115 (125)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 33445677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 008025 537 RRGTAREMLG 546 (580)
Q Consensus 537 ~lg~~~~~~g 546 (580)
.++.++..+|
T Consensus 116 ~l~~~~~~~g 125 (125)
T 1na0_A 116 NLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcc
Confidence 9999987654
No 165
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.00 E-value=1.4e-09 Score=88.05 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHH
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLR 537 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~ 537 (580)
+|++...++.+|.+++..|+|++|+..|+++++++|++..+|+++|.+|..+|++++|++.|++++++.|+ +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999764 3444444
Q ss_pred HHHHHHH
Q 008025 538 RGTAREM 544 (580)
Q Consensus 538 lg~~~~~ 544 (580)
+...+..
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 166
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.99 E-value=1.9e-09 Score=110.76 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DK 529 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p 529 (580)
++..+..++.+|..++..|+|++|+..|++++++.|++. .+++.+|.+|..+|++++|+++|++++++ ++
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 356778889999999999999999999999999999986 58999999999999999999999999998 57
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHh
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL------EPTNKRASLSADRLRK 577 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l~~l~~ 577 (580)
....+++++|.+|..+|++++|+++|++++++ .+....++..++.+..
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999 5555667777776653
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.99 E-value=1.9e-09 Score=94.45 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK------NV 532 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~------~~ 532 (580)
..+..+|..++..|++++|++.|++++++.+.. ..+++++|.++..+|++++|++++++++++.+. ..
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 456666666666677777777776666654332 455666666666667777777766666665321 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
.++.++|.++..+|++++|.+++++++++...
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45666666666667777777776666665443
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.99 E-value=1.6e-09 Score=106.34 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL-------DKK 530 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l-------~p~ 530 (580)
...++.+|..+...+++++|+.+|++++++.+.. ..+++++|.+|..+|+|++|+++|+++++. .+.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 3345568999999999999999999999965432 347999999999999999999999999953 223
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhh
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLRKV 578 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~ 578 (580)
...+++++|.+|.++|+|++|++++++++++.++. ..++..++.+...
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999987554 6788888877654
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=1.7e-09 Score=107.28 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=113.4
Q ss_pred hhchHHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHc
Q 008025 458 FNQKQSAEIAKEKGNQAYKD-K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEADCTKAINL 527 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~-g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~l 527 (580)
..+|+...+|+.++.++.+. + +++++++.++++++.+|++..+|+.++.+..+++.++ +++++++++++.
T Consensus 117 ~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 117 VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 45678899999999999988 7 9999999999999999999999999999999999888 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 528 DKKNVKAYLRRGTAREMLGY-------YKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 528 ~p~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+|.|..+|++++.++..+++ +++++++++++++++|+|..+|.++..+...
T Consensus 197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987 8999999999999999999999998877653
No 170
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.97 E-value=2.1e-09 Score=105.46 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=107.8
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
......++.....+..+|..++..|++++|+..|++++++ .|....++..+|.+|..+|++++|++++++++
T Consensus 17 q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444567888999999999999999999999999999995 56678899999999999999999999999999
Q ss_pred Hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHh
Q 008025 526 NL--------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE--------PTNKRASLSADRLRK 577 (580)
Q Consensus 526 ~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~l~~ 577 (580)
++ +|....+++++|.++..+|++++|+++|++++++. |....++..++.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 98 35667899999999999999999999999999985 455566666666543
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.97 E-value=6.9e-09 Score=85.54 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=82.1
Q ss_pred ccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532 (580)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~ 532 (580)
+.......|.+...++.+|.+++..|++++|+..|+++++.+|++..+++++|.++..+|++++|++.++++++++|++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 27 YSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 33344445677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008025 533 KAYLRRGTAR 542 (580)
Q Consensus 533 ~a~~~lg~~~ 542 (580)
.++..++.+.
T Consensus 107 ~~~~~l~~~~ 116 (118)
T 1elw_A 107 QLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 172
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=3.5e-09 Score=98.62 Aligned_cols=111 Identities=11% Similarity=-0.036 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG----SFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
.++.+++.+|..++..+++++|++.|+++++. .++.+++++|.+|.. + ++++|+++|+++++ ++++.++++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 56788999999999999999999999999875 689999999999998 7 99999999999965 679999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHh
Q 008025 538 RGTAREM----LGYYKEAIEDFSYALVLEP--TNKRASLSADRLRK 577 (580)
Q Consensus 538 lg~~~~~----~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~l~~ 577 (580)
+|.+|.. .+++++|+++|+++.+..+ +++.++..|+.+..
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 9999998 8999999999999999988 45899999988764
No 173
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.94 E-value=6.5e-09 Score=106.11 Aligned_cols=117 Identities=9% Similarity=-0.019 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----LN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD----- 528 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-----~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~----- 528 (580)
.+..+..+.++|.++...|++++|+.+|+++++ .+ |....+++++|.+|..+|++++|++++++++++.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 445567899999999999999999999999999 45 7788999999999999999999999999999984
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHh
Q 008025 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN---KRASLSADRLRK 577 (580)
Q Consensus 529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~ 577 (580)
+.....+..+|.++...|+++...+.+.-.-+. ... ..++..++.+..
T Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 444445678999999999994444444433333 322 234455555543
No 174
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.93 E-value=6.2e-09 Score=83.62 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHh
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS--LSADRLRK 577 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~--~~l~~l~~ 577 (580)
.+++|.+++..|++++|++.|+++++++|++.. +++++|.+|..+|++++|+++|+++++++|++..++ ..+..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999 999999999999999999999999999999999988 55555443
No 175
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=3.6e-09 Score=104.70 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---- 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---- 531 (580)
..+..+.++|.++.. |+|++|+.+|++++++.+.. ..++.++|.+|..+|+|++|+++|++++++.+++
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 346788889999988 99999999999999887653 5788899999999999999999999999986643
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025 532 --VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568 (580)
Q Consensus 532 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 568 (580)
..+++++|.++..+|++++|+.+|++++ ++|+....
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 3478888999999999999999999999 99988654
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.93 E-value=7.4e-09 Score=90.55 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---- 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---- 531 (580)
..+..+..+|..++..|++++|+..|++++++.+. ...++.++|.+|..+|++++|++++++++++.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 35678999999999999999999999999987432 25689999999999999999999999999986543
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 008025 532 --VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR 576 (580)
Q Consensus 532 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~ 576 (580)
..+++++|.++..+|++++|++++++++++.+.. ..++..++.+.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 6689999999999999999999999999884322 34455555543
No 177
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=5.6e-09 Score=102.44 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--- 531 (580)
.....+..+|.++...|+|++|+.+|+++++.. +....+++++|.+|.++|+|++|++++++++++.+..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 456789999999999999999999999999631 2235689999999999999999999999999986543
Q ss_pred ---HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 008025 532 ---VKAYLRRGTAREMLG-YYKEAIEDFSYALVLE 562 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 562 (580)
..+++++|.+|..+| ++++|+++|++++++.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999999 5799999999999864
No 178
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=1.2e-08 Score=99.99 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI---KLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---- 530 (580)
....+++.+|..+...|+|++|+.+|++++ +..+++. .+++++|.+|..+|+|++|++++++++++.++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 457789999999999999999999999999 4556643 68999999999999999999999999998643
Q ss_pred --CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q 008025 531 --NVKAYLRRGTAREMLGYYKEA-IEDFSYALVLE 562 (580)
Q Consensus 531 --~~~a~~~lg~~~~~~g~~~~A-~~~~~~al~l~ 562 (580)
...+++++|.+|..+|++++| ..+|++++++.
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 278999999999999999999 88899999774
No 179
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=3.9e-09 Score=104.42 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V 532 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~ 532 (580)
..+.++|.++...|+|++|+.+|++++++.+. ...++.++|.+|.. |++++|+++|++++++.+.. .
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 34445555555555555555555555554221 13445555555544 55555555555555554322 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
.++.++|.+|..+|+|++|+++|++++++.|
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555433
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=8.5e-09 Score=89.09 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
...++.+|.+++..|+|++|+..|+++++++|++..+++++|.+|..++++++|+++|+++++++|++..++..++.+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988877653
No 181
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.90 E-value=6.7e-09 Score=102.66 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKNV 532 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p~~~ 532 (580)
.+..++..|..++..|++++|+..|+++++..|++ ..++..+|.+|...|++++|++++++++++ .+...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678889999999999999999999999999998 478899999999999999999999999988 45567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHH
Q 008025 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR------ASLSADRLR 576 (580)
Q Consensus 533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~------~~~~l~~l~ 576 (580)
.+++.+|.++..+|++++|++++++++++.+.... ++..++.+.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 133 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 133 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 89999999999999999999999999998764422 555555543
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.89 E-value=1.4e-08 Score=85.73 Aligned_cols=84 Identities=8% Similarity=-0.009 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
...++.+|.+++..|+|++|+..|+++++.+|++ ..+++.+|.+|..+|++++|++.|+++++.+|++..+...+..
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4789999999999999999999999999999999 8999999999999999999999999999999999888776665
Q ss_pred HHHHcCC
Q 008025 541 AREMLGY 547 (580)
Q Consensus 541 ~~~~~g~ 547 (580)
+....++
T Consensus 119 l~~l~~~ 125 (129)
T 2xev_A 119 LQSIRLG 125 (129)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 5544433
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.89 E-value=5e-09 Score=86.92 Aligned_cols=88 Identities=8% Similarity=0.048 Sum_probs=75.6
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYL 536 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~ 536 (580)
.+|.+...++.+|..++..|++++|+..|+++++++|++..+|+++|.+|..+|++++|++.|+++++++|+ +.....
T Consensus 14 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (115)
T 2kat_A 14 QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93 (115)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHH
Confidence 346678899999999999999999999999999999999999999999999999999999999999999874 444555
Q ss_pred HHHHHHHHcC
Q 008025 537 RRGTAREMLG 546 (580)
Q Consensus 537 ~lg~~~~~~g 546 (580)
.+...+..++
T Consensus 94 ~l~~~l~~l~ 103 (115)
T 2kat_A 94 ELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5554444433
No 184
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=4.4e-09 Score=96.44 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC----
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---DKK---- 530 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---~p~---- 530 (580)
...+..+|..+...|++++|+..|++++++ .+....+++++|.+|..+|++++|++++++++++ .++
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 444455555555555555555555555542 2223344555555555555555555555555554 221
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
...+++++|.++..+|++++|+.++++++++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1234455555555555555555555555543
No 185
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.88 E-value=1.1e-08 Score=104.48 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--- 531 (580)
+.....+..+|..++..|++++|+..|++++++.+... .++.++|.+|..+|++++|++++++++++.+..
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 44556666677777777777777777777776644332 266677777777777777777777777665544
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
..+++++|.++..+|++++|+++|++++++.+.
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 556667777777777777777777777666443
No 186
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.88 E-value=1.3e-08 Score=80.75 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025 494 NGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569 (580)
Q Consensus 494 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 569 (580)
+|+++..+..+|.+++..++ .++|.+.++++++++|++..+++.+|..+++.|+|++|+.+|+++++.+|.++...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~ 80 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV 80 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 58889999999999987666 78999999999999999999999999999999999999999999999988854433
No 187
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.87 E-value=2.1e-08 Score=102.13 Aligned_cols=104 Identities=17% Similarity=0.024 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDK 529 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~p 529 (580)
+..+..+..+|.++...|+|++|+++|++++++.+. ...+++++|.+|..+|++++|+++++++++ .+|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 356788999999999999999999999999997432 256899999999999999999999999999 788
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
....+++++|.++..+|++++|++++++++++.+.
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999553
No 188
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.86 E-value=1.2e-08 Score=103.97 Aligned_cols=119 Identities=15% Similarity=0.056 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--- 529 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--- 529 (580)
.+..+..++.+|.+++..|++++|+.+|++++++.+. ...+++++|.+|..+|++++|+++|++++++.+
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 4677889999999999999999999999999987543 256889999999999999999999999999743
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHhh
Q 008025 530 ---KNVKAYLRRGTAREMLGYYKEAIEDFSYALV-----LEPTNKRASLSADRLRKV 578 (580)
Q Consensus 530 ---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~~l~~l~~~ 578 (580)
....+++++|.+|..+|++++|+++|+++++ .+|....++..++.+...
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 1246899999999999999999999999999 778778888888877643
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.86 E-value=3e-08 Score=85.43 Aligned_cols=99 Identities=17% Similarity=0.115 Sum_probs=89.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM- 544 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~- 544 (580)
+|..+...+.+++|++.|+++.+. .++.+++++|.+|.. .+++++|+++|+++.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 999999999999999999999987 789999999999999 89999999999999987 689999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 545 ---LGYYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 545 ---~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
.+++++|+++|+++.++ .++.+...|+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 99999999999999998 46666666554
No 190
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.84 E-value=8.8e-09 Score=105.19 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKN 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p~~ 531 (580)
..+..++.+|..++..|+|++|+..|++++++.|++ ..+++.+|.+|...|++++|++++++++++ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456788999999999999999999999999999998 468999999999999999999999999988 4455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR 576 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~ 576 (580)
..+++++|.++..+|++++|+.++++++++.+.. ..++..++.+.
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 7799999999999999999999999999997754 33566665554
No 191
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=7.3e-09 Score=106.41 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--- 531 (580)
+.....+..+|..++..|++++|+.+|++++++.+... .+++++|.+|..+|++++|+++|++++++.+..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 45566777788888888888888888888877765432 377778888888888888888888877776643
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 008025 532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR 576 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~ 576 (580)
..+++.+|.++..+|++++|+++|++++++.++. ..++..++.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 5677777888888888888888888777774432 23455555443
No 192
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.80 E-value=4.7e-08 Score=104.44 Aligned_cols=125 Identities=10% Similarity=-0.037 Sum_probs=104.9
Q ss_pred ccccch-hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025 453 LSTNTF-NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (580)
Q Consensus 453 ~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~ 530 (580)
+..... ..|+....|+.++..+.+.|++++|...|+++++..|.++ .+|.+++.++...|++++|++.|+++++..|.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 333443 3577888999999999999999999999999999999985 68999999998899999999999999998888
Q ss_pred CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 531 NVKAYLRRGTA-REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 531 ~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
....+...+.+ +...|++++|.+.|+++++.+|+++.++..+..+..
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 77777766655 346889999999999999999999888888877654
No 193
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=2.8e-08 Score=90.96 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=90.9
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDK-- 529 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-- 529 (580)
..+.....+..+|..+...|++++|++.|++++++ .++ ...+++++|.++..+|++++|++++++++++.+
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999999999999999999999998 443 356799999999999999999999999998743
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 530 KN----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 530 ~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
.+ ..++.++|.++..+|++++|.+++++++++..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 22 34578999999999999999999999998854
No 194
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.77 E-value=3e-08 Score=97.94 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--- 531 (580)
+.....+..+|..++..|++++|+..|++++++.+.. ..++.++|.+|..+|++++|++++++++++.+..
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 4556778888888888888888888888888775432 3378888888888888888888888888876654
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 008025 532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR 576 (580)
Q Consensus 532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~ 576 (580)
..+++.+|.++..+|++++|++++++++++.+.. ..++..++.+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 6678888888888888888888888888875533 33455555543
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.76 E-value=5.4e-08 Score=101.98 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK 530 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~ 530 (580)
+....+.+..+..+|+|++|+..|+++++. .+++ ...+++||.+|..+|+|++|+.++++++++ .|+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 344556677788999999999999999986 3444 578999999999999999999999999987 344
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q 008025 531 N---VKAYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRL 575 (580)
Q Consensus 531 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l 575 (580)
+ ...++++|.+|..+|+|++|+..|++++++ .|+++.....+..+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 441 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4 558999999999999999999999999975 67887766654443
No 196
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.76 E-value=8.8e-08 Score=77.92 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
+..++.+|..++++++|.+|+..|+++++.. .....++..+|.+|+++|++++|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4566788888888888888888888888763 234677888888888888888888888888888888887777
Q ss_pred HHH
Q 008025 537 RRG 539 (580)
Q Consensus 537 ~lg 539 (580)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 776
No 197
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=3.6e-08 Score=82.81 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=80.8
Q ss_pred cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
.......+.....++.+|..++..|++++|+..|+++++..|++ ..+++++|.+|..+|++++|+++|+++++
T Consensus 28 ~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 28 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33334456678899999999999999999999999999998877 89999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcC
Q 008025 527 LDKKNVKAYLRRGTAREMLG 546 (580)
Q Consensus 527 l~p~~~~a~~~lg~~~~~~g 546 (580)
++| +...+..++.++..++
T Consensus 108 ~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 108 EHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HCC-CHHHHHHHHHHHHHHH
T ss_pred hCC-CHHHHHHHHHHHHHHH
Confidence 999 6888888887776543
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.72 E-value=6.5e-08 Score=99.69 Aligned_cols=107 Identities=11% Similarity=-0.014 Sum_probs=89.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---CHH
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK---NVK 533 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~---~~~ 533 (580)
......+.|+|++|+..|+++++. .|++ ...++++|.+|..+|+|++|+.++++++++ .|+ -..
T Consensus 304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 344445678999999999999985 4555 467899999999999999999999999987 234 456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 008025 534 AYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRLR 576 (580)
Q Consensus 534 a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l~ 576 (580)
.++++|.+|..+|+|++|+..|++++++ .|+++........|.
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 7999999999999999999999999976 688888877666554
No 199
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=3.5e-08 Score=94.72 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTA 541 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~ 541 (580)
.+....++..+...|+|++|.+.|+..+...|++. .++.+|.++++.++|++|+..|+++++..+.. ..+++++|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 34566788999999999999999999999999988 99999999999999999999999887764221 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHhh
Q 008025 542 REMLGYYKEAIEDFSYALVLE--PT-NKRASLSADRLRKV 578 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~--p~-~~~~~~~l~~l~~~ 578 (580)
+..+|++++|+.+|++++.-. |. ..+++..++.+...
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 999999999999999998654 55 55677777776554
No 200
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.68 E-value=8.7e-08 Score=102.36 Aligned_cols=121 Identities=13% Similarity=0.043 Sum_probs=107.2
Q ss_pred ccchhchHHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025 455 TNTFNQKQSAEIAKEKGNQAYK-------DKQWL-------KAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEA 519 (580)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~-------~g~~~-------~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~ 519 (580)
+.....|.....|+.+|..+.+ .|+++ +|+..|+++++ ..|++...|+.++.++...|++++|.+
T Consensus 263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344457788999999999986 79987 99999999997 899999999999999999999999999
Q ss_pred HHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 520 DCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 520 ~~~~al~l~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
.|+++++++|+++ .+|.+++..+.+.|++++|++.|+++++..|.+...+...+.+
T Consensus 343 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 343 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred HHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 9999999999986 6999999999999999999999999999998876666544433
No 201
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.67 E-value=1.7e-07 Score=76.27 Aligned_cols=81 Identities=15% Similarity=0.043 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570 (580)
Q Consensus 498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 570 (580)
+.-++.+|..++..++|..|+.+|++|++.. +.....+.++|.+++++|++++|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4567899999999999999999999999973 356789999999999999999999999999999999999988
Q ss_pred HHHHHHhh
Q 008025 571 SADRLRKV 578 (580)
Q Consensus 571 ~l~~l~~~ 578 (580)
++..+++.
T Consensus 85 n~~~~~~~ 92 (104)
T 2v5f_A 85 NLKYFEYI 92 (104)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 88866654
No 202
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.66 E-value=3.3e-07 Score=75.70 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=92.0
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHH
Q 008025 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ---AEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKE 550 (580)
Q Consensus 476 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a~~~lg~~~~~~g~~~~ 550 (580)
.......+.+.|++.+..++....+.+++|+++.+..+... ++..++..++.+ | ..-+.+|.+|..++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455677888888888888899999999999999887665 999999999987 5 567899999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025 551 AIEDFSYALVLEPTNKRASLSADRLRKVF 579 (580)
Q Consensus 551 A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 579 (580)
|+++++..|+.+|+|..+......+.+.+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998888765
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.64 E-value=1.9e-07 Score=96.40 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK 530 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~ 530 (580)
..........+.++|+|++|++.|+++++. .|++ ...+.+++.+|..+|+|++|+.++++++++ .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 445556666778899999999999999975 3444 578999999999999999999999999987 234
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 008025 531 N---VKAYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRLR 576 (580)
Q Consensus 531 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l~ 576 (580)
+ ...++++|.+|..+|++++|+.+|++++++ .|+++.....+..+.
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4 557999999999999999999999999975 678877766555444
No 204
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.60 E-value=2e-07 Score=97.35 Aligned_cols=103 Identities=16% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 464 AEIAKEKGNQAYKD----KQWLKAISFYTEAIKLNGNNATYYSNRAAA-Y--LESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 464 ~~~~~~~g~~~~~~----g~~~~Ai~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
+..++++|..+... +++++|+..|+++. |.++.+++++|.+ | ...+++++|+++|+++.+. +++.+++
T Consensus 213 a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~ 287 (452)
T 3e4b_A 213 AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAEL 287 (452)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 33334444444333 34444444444443 4444444444444 2 2344444444444444432 2444444
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 537 RRGTAREMLG-----YYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 537 ~lg~~~~~~g-----~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
++|.+|. .| ++++|+++|+++. ++++.+...++.+
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 4444444 22 4444444444444 4444444444443
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.57 E-value=1.9e-07 Score=97.78 Aligned_cols=109 Identities=8% Similarity=-0.032 Sum_probs=93.6
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-- 527 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-- 527 (580)
..++..+..+.++|..|..+|+|++|+.+|+++++. .|++ ...+++||.+|..+|+|++|+..|++|+++
T Consensus 345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999975 3444 567999999999999999999999999987
Q ss_pred ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 528 ---DKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 528 ---~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
.|++ .+...+++.++.++++|++|+..|+++.+..-++.
T Consensus 425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~ 469 (490)
T 3n71_A 425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ 469 (490)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555 45678899999999999999999999977543333
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.54 E-value=3e-07 Score=72.83 Aligned_cols=72 Identities=17% Similarity=0.066 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 460 QKQSAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
+|+++..+..+|..++..++ .++|...++++++++|++..+++.+|..+++.|+|++|+.+++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 35678899999999986665 7999999999999999999999999999999999999999999999999983
No 207
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.53 E-value=4.4e-07 Score=91.84 Aligned_cols=101 Identities=12% Similarity=-0.027 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----- 530 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----- 530 (580)
...+..+|..++..|++++|++.|++++++. |....++.++|.+|...|++++|++++++++++.+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 3456778888888888888888888888764 334567778888888888888888888888888764
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
...++.++|.++...|++++|..++++++++.+.
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 3467788888888888888888888888888655
No 208
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.52 E-value=5.3e-07 Score=95.18 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 463 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
...+++.+|..+...| ++++|++.|+++++. .++.+++++|.+|.. .+++++|+++|+++++. +++.++
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 402 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQ 402 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHH
Confidence 4567788888888755 889999999999887 678899999999998 88999999999999886 468899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Q 008025 536 LRRGTAREM----LGYYKEAIEDFSYALVLEPT---NKRASLSADRL 575 (580)
Q Consensus 536 ~~lg~~~~~----~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~l 575 (580)
+++|.+|.. .+++++|.++|+++++.+|+ ++.+...++.+
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 999999998 88999999999999999854 77777766543
No 209
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.50 E-value=1.2e-06 Score=88.52 Aligned_cols=101 Identities=9% Similarity=-0.035 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD--------K 529 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--------p 529 (580)
...+..+|..++..|++++|+..|++++++ .++. ..+++++|.++..+|++++|++++++++++. |
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 132 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence 455667777777777777777777777764 2322 4556777777777777777777777777764 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
....++.++|.++..+|++++|.+++++++++.+.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 33456677777777777777777777777777664
No 210
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.49 E-value=7.4e-07 Score=93.08 Aligned_cols=108 Identities=13% Similarity=0.007 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025 465 EIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKNVKAYLR 537 (580)
Q Consensus 465 ~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~ 537 (580)
.+++.+|..+.+.| ++++|++.|+++.+..+.+...++++|.+|... +++++|+++|+++. |+++.++++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 38899999999999 999999999999999999999999999999766 79999999999998 899999999
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 538 RGTA-R--EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 538 lg~~-~--~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+|.+ + ...+++++|+++|+++.+. +++.++..++.+..
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 9999 4 5789999999999999965 48999999998764
No 211
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.48 E-value=2.1e-06 Score=90.60 Aligned_cols=111 Identities=14% Similarity=-0.022 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 008025 462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
.++.+++.+|..+.. .+++++|++.|+++.+. .++.++++||.+|.. .+++++|+++|+++.+. +++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 467889999999999 99999999999999875 578999999999999 89999999999999875 5899
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 534 AYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 534 a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
+++++|.+|.. .+++++|+++|+++++. +++.++..++.+...
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSR 195 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence 99999999998 88999999999999986 589999999887643
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=4.7e-07 Score=77.67 Aligned_cols=81 Identities=14% Similarity=0.015 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
...++.+++|.++.+.+ ++++++..+++.++.+ | ++.+++|+||..|+++++|++|.++++++++++|+|.++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 45678899999999987 7889999999999998 7 56899999999999999999999999999999999999887
Q ss_pred HHHHHH
Q 008025 537 RRGTAR 542 (580)
Q Consensus 537 ~lg~~~ 542 (580)
.+-.+-
T Consensus 110 Lk~~ie 115 (152)
T 1pc2_A 110 LERLID 115 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765544
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.44 E-value=1e-06 Score=83.56 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 008025 461 KQSAEIAKEKGNQAYK-----DK------QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLES-----GSFLQAEADCT 522 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~-----~g------~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~ 522 (580)
+++++.++..|..... .+ ...+|...++++++++|+ +..+|..+|..|.+. |+.++|.++|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 4556666655555432 23 347899999999999999 677999999999996 99999999999
Q ss_pred HHHHcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 008025 523 KAINLDKKN-VKAYLRRGTAREM-LGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 523 ~al~l~p~~-~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~ 564 (580)
++++++|+. ...++.+|..+.. +++++++.++++++++..|.
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999975 9999999999987 59999999999999998776
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=1.7e-06 Score=74.31 Aligned_cols=93 Identities=19% Similarity=0.055 Sum_probs=83.4
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008025 477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM----LGYYKEAI 552 (580)
Q Consensus 477 ~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~g~~~~A~ 552 (580)
.+++++|++.|+++.+..... +. +|.+|...+.+++|+++|+++.+. +++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 367899999999999987544 44 999999999999999999999997 789999999999999 89999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 553 EDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 553 ~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
++|+++.+. .++.+...|+.+..
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQY 104 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHH
Confidence 999999987 78999999998764
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.38 E-value=2.4e-06 Score=84.57 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=82.7
Q ss_pred hhhccccccchhchHHHHHHHHHHHHHHHccCH-------HHHHH-HHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW-------LKAIS-FYT--EAIKLNGNNATYYSNRAAAYLESGSFLQA 517 (580)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~-------~~Ai~-~~~--~al~~~p~~~~~~~~la~~~~~~~~~~~A 517 (580)
.+...+.+.+..+|+.+.++-.++.++.....+ .+++. .+. .++..+|.++.++..++..+...|++++|
T Consensus 217 ~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A 296 (372)
T 3ly7_A 217 RASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES 296 (372)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHH
Confidence 334444555555666666666555555321111 01111 111 12244566777777777777778999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025 518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566 (580)
Q Consensus 518 ~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 566 (580)
++.++++++++| +..+|..+|.++...|++++|++.|++|+.++|..+
T Consensus 297 ~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 297 YQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 999999999997 477889999999999999999999999999999875
No 216
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.32 E-value=4.6e-06 Score=81.07 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=55.7
Q ss_pred HHHHHHcc--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCCHHHHH
Q 008025 471 GNQAYKDK--QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL----------DKKNVKAYL 536 (580)
Q Consensus 471 g~~~~~~g--~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----------~p~~~~a~~ 536 (580)
+.+.+..| ++++|...|+++.+..|+ ....+++ +++++|++++|.+.+++++++ +|+++.++.
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 33344444 666666666666555554 2223333 566666666666666655554 356666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025 537 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571 (580)
Q Consensus 537 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 571 (580)
|+..+...+|+ +|.++++++.+.+|+++.+...
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 66666666665 6666666666666666655543
No 217
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.22 E-value=1.5e-05 Score=77.55 Aligned_cols=111 Identities=8% Similarity=-0.118 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHcCCC--C
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNR--AAAYLESG--SFLQAEADCTKAINLDKK--N 531 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~l~p~--~ 531 (580)
...+.+...+.+++++|+.+.|.+.+++..+.+|+ +-.....+ +++.+..| ++++|+..|+++.+..|+ .
T Consensus 134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~ 213 (310)
T 3mv2_B 134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT 213 (310)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc
Confidence 67888889999999999999999999999999983 12333444 55566667 999999999999988887 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHH
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVL----------EPTNKRASLSADRL 575 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------~p~~~~~~~~l~~l 575 (580)
...+++ ++..+|++++|++.+++.+++ +|+++.++.++..+
T Consensus 214 ~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 214 QLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred HHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 445555 899999999999999988887 48899999776544
No 218
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.18 E-value=1.9e-05 Score=65.25 Aligned_cols=83 Identities=13% Similarity=-0.007 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 497 NATYYSNRAAAYLESGSF---LQAEADCTKAINLDK-KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
.....+++|+++.+..+. .+++..++..++.+| ...+.+|.+|+.++++|+|++|.++.+.+++.+|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 578889999999988764 578999999998888 4578899999999999999999999999999999999999988
Q ss_pred HHHHhhh
Q 008025 573 DRLRKVF 579 (580)
Q Consensus 573 ~~l~~~~ 579 (580)
..|.+.+
T Consensus 119 ~~Ie~ki 125 (134)
T 3o48_A 119 SMVEDKI 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 219
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.18 E-value=4.4e-05 Score=63.91 Aligned_cols=85 Identities=13% Similarity=-0.012 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025 495 GNNATYYSNRAAAYLESGSF---LQAEADCTKAINLDK-KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570 (580)
Q Consensus 495 p~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 570 (580)
.-.....+++|+++.+..+. .+++..++..++.+| +.-+.+|.+|..++++|+|++|.++.+.+|+.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678999999999998864 579999999999888 46778999999999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 008025 571 SADRLRKVF 579 (580)
Q Consensus 571 ~l~~l~~~~ 579 (580)
....+++.+
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887765
No 220
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.10 E-value=2.4e-05 Score=89.14 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDK-------------------------KNVKAYLRRGTAREMLGYYKEAIED 554 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p-------------------------~~~~a~~~lg~~~~~~g~~~~A~~~ 554 (580)
.|..++.+|.++|++++|++.++++...+. .+++-+..++..|...|.|++|+..
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344555555555556666665555533221 1222333455556677777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHh
Q 008025 555 FSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 555 ~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+++++.+++.+...+..++.+..
T Consensus 1303 lE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1303 LEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHhccChhHhHHHHHHHHHHH
Confidence 77777777777777766666543
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.08 E-value=3.1e-05 Score=76.68 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHH-HHHH--HHHHcCC
Q 008025 463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF-------LQAE-ADCT--KAINLDK 529 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~-------~~A~-~~~~--~al~l~p 529 (580)
.+..++.+|..++..++ +.+|+.+|+++++++|+++.+|..++.+|.....+ .+++ ..++ .++.++|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 34556778888877544 58999999999999999999999999999643211 1111 1122 2346689
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.++.+|..++..+...|++++|++.++++++++|+ ..++..++.+...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999975 6777777776543
No 222
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.04 E-value=3.3e-05 Score=87.98 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---------- 530 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---------- 530 (580)
.+...+|+++|.++.+.|++++|++.|.++ ++++.|.+++.++.++|+|++|+++|..+.+..++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 356789999999999999999999999886 88899999999999999999999999887766532
Q ss_pred -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 531 -----------------NVKAYLRRGTAREMLGYYKEAIEDFSYA 558 (580)
Q Consensus 531 -----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a 558 (580)
+...++++|..++..|+|++|..+|+++
T Consensus 1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 2234556677777777777776666664
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.93 E-value=4.9e-05 Score=62.70 Aligned_cols=81 Identities=11% Similarity=-0.026 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLK---AISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL 536 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~---Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 536 (580)
...+..+++|..+.+..+..+ +|..++..++.+ | ..-+++|.||..++++|+|++|.++++..|+.+|+|.++..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456778999999998877666 999999998877 5 56789999999999999999999999999999999999887
Q ss_pred HHHHHH
Q 008025 537 RRGTAR 542 (580)
Q Consensus 537 ~lg~~~ 542 (580)
.+..+-
T Consensus 113 Lk~~i~ 118 (126)
T 1nzn_A 113 LERLID 118 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765544
No 224
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.89 E-value=0.00011 Score=74.64 Aligned_cols=105 Identities=15% Similarity=0.059 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
..|..++.++.+.|+|++|++.|.++ +++..|.....++...|+++.|..+..+ |..+|++ ...+...|.+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek 219 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD 219 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH
Confidence 46788999999999999999999999 5789999999999999999999877765 3355544 4467888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
.|++++|+..+++++.+++.....+..++.+..+
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999887654
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.88 E-value=4.1e-05 Score=78.86 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=73.3
Q ss_pred chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008025 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL- 527 (580)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l- 527 (580)
-..++..+..+.++|..|..+|+|++|+.+|+++++. .|++ ...+++||.+|..+|++++|+..|++|+++
T Consensus 322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999975 3444 567999999999999999999999999987
Q ss_pred ----CCCCHH---HHHHHHHHHHHc
Q 008025 528 ----DKKNVK---AYLRRGTAREML 545 (580)
Q Consensus 528 ----~p~~~~---a~~~lg~~~~~~ 545 (580)
.|+++. .+.+++.+...+
T Consensus 402 ~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 402 RVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHH
Confidence 455544 456666665443
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.86 E-value=0.00011 Score=63.26 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C---
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK---K--- 530 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---~--- 530 (580)
.++.....++..+.|+.|+-....++.+..++ ...+..+|.+++..++|..|...|+++|++.. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45667777888888888888888877764332 24778888888888888888888888876621 1
Q ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 531 -------------------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 531 -------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
..+..|..+.||.+++++++|+..++.. -.....+.+...|+++.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence 1267899999999999999999987742 223345667777776653
No 227
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=6.7e-05 Score=77.16 Aligned_cols=101 Identities=8% Similarity=-0.043 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAINL------DKK 530 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p~ 530 (580)
.......++..+...|++++|+..|++++...+ .....+.++|.+|..+|+|++|++.+++++.. .+.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 344566788888899999999999999998632 23678999999999999999999999999876 334
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
...++..++.+|..+|++++|+..+++++.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999998754
No 228
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.82 E-value=6.6e-05 Score=77.21 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=67.1
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-- 527 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-- 527 (580)
..++..+..+.++|..|..+|+|++|+.+|+++++. .|++ ...+++||.+|..+|+|++|+..|++|+++
T Consensus 334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999975 3444 567999999999999999999999999987
Q ss_pred ---CCCCHHH
Q 008025 528 ---DKKNVKA 534 (580)
Q Consensus 528 ---~p~~~~a 534 (580)
.|+++..
T Consensus 414 ~~lG~~Hp~~ 423 (433)
T 3qww_A 414 VAHGKDHPYI 423 (433)
T ss_dssp HHTCTTCHHH
T ss_pred HHcCCCChHH
Confidence 4666543
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.74 E-value=0.0002 Score=67.97 Aligned_cols=115 Identities=8% Similarity=-0.051 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHH------HccCHHHHHHH-----HHHHHH-hCCCCHHHHHHHHHHHHH---c--C------CHHHH
Q 008025 461 KQSAEIAKEKGNQAY------KDKQWLKAISF-----YTEAIK-LNGNNATYYSNRAAAYLE---S--G------SFLQA 517 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~------~~g~~~~Ai~~-----~~~al~-~~p~~~~~~~~la~~~~~---~--~------~~~~A 517 (580)
+..+..++.+|..|- +...+.++++. +.+++. .+|++.+.++..|..... . + ...+|
T Consensus 103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A 182 (301)
T 3u64_A 103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence 344555555555442 22445545443 344443 478888888888877743 2 2 26789
Q ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 008025 518 EADCTKAINLDKK--NVKAYLRRGTAREML-----GYYKEAIEDFSYALVLEPTN-KRASLSADRL 575 (580)
Q Consensus 518 ~~~~~~al~l~p~--~~~a~~~lg~~~~~~-----g~~~~A~~~~~~al~l~p~~-~~~~~~l~~l 575 (580)
...+++++++||+ +..+|..+|..|.+. |+.++|+++|+++++++|+. .+.+..++..
T Consensus 183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~ 248 (301)
T 3u64_A 183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 9999999999999 566999999999995 99999999999999999975 8888877764
No 230
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00015 Score=74.59 Aligned_cols=100 Identities=13% Similarity=-0.015 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------ 529 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p------ 529 (580)
....++.++|..|.+.|+|++|++.|.+++...+.. ..++..++.++...+++++|++.+++++...+
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 445678999999999999999999999999876553 24567788888889999999999999988733
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.....+.++|.+|...|+|++|...+++++..
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34678999999999999999999999999876
No 231
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.55 E-value=4.6e-05 Score=77.48 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
..|..+|..++..|+|++|+.+|.++ ..|..++.|+.++|+|++|++.++++ +++.+|.....++..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 48999999999999999999999987 58899999999999999999999999 578999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC
Q 008025 545 LGYYKEAIEDFSYALVLEPTN 565 (580)
Q Consensus 545 ~g~~~~A~~~~~~al~l~p~~ 565 (580)
.|+++.|..+..+ +..+|++
T Consensus 190 ~~ef~lA~~~~l~-L~~~ad~ 209 (449)
T 1b89_A 190 GKEFRLAQMCGLH-IVVHADE 209 (449)
T ss_dssp TTCHHHHHHTTTT-TTTCHHH
T ss_pred cCcHHHHHHHHHH-HHhCHhh
Confidence 9999999888775 4455544
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.45 E-value=0.0012 Score=54.40 Aligned_cols=81 Identities=7% Similarity=0.014 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..+..++.|..+.+..+ ...+|..++..++.+|. .-++++.||..++++|+|++|.++++.+++.+|+|.++....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34667778888877654 46799999999998884 578999999999999999999999999999999999988776
Q ss_pred HHHHH
Q 008025 539 GTARE 543 (580)
Q Consensus 539 g~~~~ 543 (580)
..+-.
T Consensus 119 ~~Ie~ 123 (134)
T 3o48_A 119 SMVED 123 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.42 E-value=0.0016 Score=54.43 Aligned_cols=80 Identities=8% Similarity=0.003 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
..+..++.|..+.+..+ ..++|..++..++..|. .-+++|.||..++++|+|++|.++++..|+.+|+|.++....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45677888888887665 45799999999998884 578999999999999999999999999999999999987766
Q ss_pred HHHH
Q 008025 539 GTAR 542 (580)
Q Consensus 539 g~~~ 542 (580)
..+-
T Consensus 118 ~~Ie 121 (144)
T 1y8m_A 118 SMVE 121 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.36 E-value=0.002 Score=54.25 Aligned_cols=111 Identities=14% Similarity=-0.125 Sum_probs=91.9
Q ss_pred hchHHHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQW------LKAISFYTEAIKLNGNN--------ATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~------~~Ai~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
..|++.+.|.......-+.|+. ++-++.|++++..-|-. ...|...|.. ..++|.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3467778888888888888888 88899999999876642 2344555533 5779999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025 525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570 (580)
Q Consensus 525 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 570 (580)
++++...++.|...|.--.++|+.+.|.+.+.+++.+.|.....+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 9999899999999999999999999999999999999998876554
No 235
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.28 E-value=0.00097 Score=72.55 Aligned_cols=116 Identities=12% Similarity=-0.054 Sum_probs=60.6
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------CC-----------CHHHHHHHHHHHHHcCCHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----------GN-----------NATYYSNRAAAYLESGSFLQ 516 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-----------p~-----------~~~~~~~la~~~~~~~~~~~ 516 (580)
..|.....|+..+......|++++|.+.|++++..- |. ...+|...+......++.+.
T Consensus 373 ~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~ 452 (679)
T 4e6h_A 373 CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAA 452 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHH
Confidence 344444455555555555555555665555555431 21 22345555555555555555
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 517 AEADCTKAINL-DKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 517 A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
|.+.|.+|++. .+.....|...+.+-.+.+ +++.|.+.|+++++..|+++..+..+..
T Consensus 453 AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 453 SRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 66666665555 3333444544444444443 3566666666666666666665544443
No 236
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.14 E-value=0.0027 Score=68.99 Aligned_cols=115 Identities=6% Similarity=-0.153 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGT 540 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~ 540 (580)
....|...++...+.++.+.|...|.+|++. .+.....|...+....+.+ +++.|.+.|+++++..|+++..|...+.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 4557888888888999999999999999988 4455677777777776665 4899999999999999999999988898
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHh
Q 008025 541 AREMLGYYKEAIEDFSYALVLEPT---NKRASLSADRLRK 577 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~l~~ 577 (580)
.....|+.+.|...|+++++..|+ ....|......+.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 888999999999999999999883 4566666555543
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.90 E-value=0.008 Score=51.75 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----------------------CHHHHHHHHHHHHHcCCHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---N----------------------NATYYSNRAAAYLESGSFLQ 516 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----------------------~~~~~~~la~~~~~~~~~~~ 516 (580)
...+.+..+|+.+|.+++|..|...|+++|++.. . +.+..|.++.||.+++++++
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence 4678889999999999999999999999986521 1 12688999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025 517 AEADCTKAINLDKKNVKAYLRRGTAR 542 (580)
Q Consensus 517 A~~~~~~al~l~p~~~~a~~~lg~~~ 542 (580)
|+..++.. -.....++....||.+|
T Consensus 141 Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 141 AIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 99988653 23345677777777665
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.44 E-value=0.042 Score=55.44 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
.+...++.++...|++.+++..+++++..+|-+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567788889999999999999999999999999999999999999999999999988755
No 239
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.34 E-value=0.031 Score=58.47 Aligned_cols=114 Identities=9% Similarity=-0.092 Sum_probs=86.8
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------------------------------
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA------------------------------- 507 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~------------------------------- 507 (580)
..|.....|+..+..+.+.|+.++|.+.|++++.. |.+...|...+..
T Consensus 208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccH
Confidence 34566788999999999999999999999999999 9875544433322
Q ss_pred ---------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025 508 ---------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSADR 574 (580)
Q Consensus 508 ---------~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~ 574 (580)
..+.++.+.|.+.|+++ +..+.....|...+..-...+ +++.|.+.|+++++..|+++..+..+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 22356788899999999 443345667777676666666 6999999999999999998877655443
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.32 E-value=0.072 Score=45.56 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC--------------
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--LD-------------- 528 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~-------------- 528 (580)
+--..++..++-.|+|..++-.+.+ -+...+.+..+.||.++++|..|+.++++.++ .+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 4445678889999999999887654 36678888899999999999999999999993 32
Q ss_pred -CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025 529 -KKNVKA-YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570 (580)
Q Consensus 529 -p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 570 (580)
|.+-+. +..+|.++.+.|+-+||+.+|.......|-.+.+.+
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 334444 455699999999999999999999988887665553
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.87 E-value=0.1 Score=48.81 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=76.4
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-----------------
Q 008025 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA----------------- 534 (580)
Q Consensus 472 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a----------------- 534 (580)
..+++.|+.++|++.....++.+|.|......+-..++-.|+++.|.+.++-+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v 84 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 84 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999865332
Q ss_pred ------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025 535 ------------------YLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565 (580)
Q Consensus 535 ------------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 565 (580)
....+......|+.++|.+.-.++++..|..
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 2223444556688888888888888877653
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.44 E-value=0.077 Score=55.05 Aligned_cols=81 Identities=20% Similarity=0.088 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~ 544 (580)
..+..+|........+..|..+|.+|..+.|++...|+.||.++...++.-+|+-+|.+++....-.+.+..|+...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999888899999999888765
Q ss_pred c
Q 008025 545 L 545 (580)
Q Consensus 545 ~ 545 (580)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 243
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.19 E-value=0.26 Score=51.35 Aligned_cols=108 Identities=10% Similarity=-0.132 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTA 541 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~~ 541 (580)
....|...+....+.++.+.|...|.++ +..+.....|...+...+..+ +++.|.+.|+++++..|+.+..|...+..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467788888888889999999999999 433345666766676666666 69999999999999999999888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025 542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575 (580)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 575 (580)
....|+.+.|...|+++. .....|......
T Consensus 364 e~~~~~~~~aR~l~er~~----k~~~lw~~~~~f 393 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE----KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC----CBHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 888999999999988872 344555544443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.05 Score=59.22 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 558 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 558 (580)
.+...+.-++..++|+-|+++.++++.+-|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45555666678899999999999999999999999999999999999999998877655
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.02 E-value=0.12 Score=53.59 Aligned_cols=78 Identities=14% Similarity=0.002 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
.+..||.+......++.|..+|.+|+.+.|++...|+.+|.+....++.-+|.-+|-+++.-....+.+..++..+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 455667766666777777777777777777777777777777777777777777777777666666666666666544
No 246
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.96 E-value=0.38 Score=50.25 Aligned_cols=104 Identities=6% Similarity=-0.063 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK-KNVKAYLRRGT 540 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~lg~ 540 (580)
+...|..+-..+.+.|++++|++.|++..+.. .-+...|+.+-..|.+.|+.++|.+.+++..+..- -+...|..+-.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34577888899999999999999999988753 22567888999999999999999999999887632 25678888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCCH
Q 008025 541 AREMLGYYKEAIEDFSYALVL--EPTNK 566 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l--~p~~~ 566 (580)
+|.+.|+.++|.+.|++-.+. .|+..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999987664 45433
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.085 Score=57.44 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
....+...+..+.++|+|+-|++.-++++...|.+...|+.|+.||.++|+|+.|+=.++-+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44567778999999999999999999999999999999999999999999999998666554
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.42 E-value=0.57 Score=39.50 Aligned_cols=87 Identities=13% Similarity=-0.044 Sum_probs=69.4
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l 538 (580)
.....+..|...+.. ...+|.++|.+.|+.++++....+..|...|.--..+|+...|.+.+.+++.+.|...+.+ ..
T Consensus 56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~ 133 (161)
T 4h7y_A 56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EI 133 (161)
T ss_dssp TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HH
T ss_pred cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HH
Confidence 344566777777755 5669999999999999999888899999999999999999999999999999999765533 34
Q ss_pred HHHHHHcCC
Q 008025 539 GTAREMLGY 547 (580)
Q Consensus 539 g~~~~~~g~ 547 (580)
++.-.+.|+
T Consensus 134 a~~nl~~~~ 142 (161)
T 4h7y_A 134 ALRNLNLQK 142 (161)
T ss_dssp HHHHHHTTC
T ss_pred HHHhhhcCC
Confidence 444444443
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.36 E-value=0.33 Score=45.30 Aligned_cols=66 Identities=18% Similarity=0.070 Sum_probs=59.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 572 (580)
Q Consensus 507 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 572 (580)
..++.++.++|++.+...++.+|.+......+-..+.-.|+++.|.+.++.+.+++|+....-..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999976554443
No 250
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.34 E-value=2.2 Score=36.60 Aligned_cols=103 Identities=14% Similarity=0.042 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--L---------------NGNNAT-YYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
+.+...+....++.+.++|..|+..+++.+. . +|.+.+ .+..+|.+..+.|+-++|+.++..
T Consensus 60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 4566778899999999999999999999993 2 344444 466789999999999999999999
Q ss_pred HHHcCCCC------------------------------------------------HH------------HHHHHHHHHH
Q 008025 524 AINLDKKN------------------------------------------------VK------------AYLRRGTARE 543 (580)
Q Consensus 524 al~l~p~~------------------------------------------------~~------------a~~~lg~~~~ 543 (580)
....+|-. .+ ...+.+..|+
T Consensus 140 Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf 219 (242)
T 3kae_A 140 SFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYF 219 (242)
T ss_dssp HHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHH
T ss_pred hcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 88775410 00 1223466788
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 008025 544 MLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 544 ~~g~~~~A~~~~~~al~l~p~ 564 (580)
.+|..+++..+|...-+.+|.
T Consensus 220 ~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 220 NLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred hcccchhHHHHHHHHHhcCCC
Confidence 899999999999999888885
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.18 E-value=1.1 Score=44.65 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=75.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC----HHH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKN----VKA 534 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~---p~~----~~a 534 (580)
..+|..|+..|+|.+|++.+.+.++.-.. + .+.+..-...|..++++.++...|.++.... +.. +..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 46899999999999999999998874222 2 4667788889999999999999999987653 122 234
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHhhC
Q 008025 535 YLRRGTARE-MLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 535 ~~~lg~~~~-~~g~~~~A~~~~~~al~l~ 562 (580)
...-|..+. ..++|.+|..+|-++++-.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 455688898 8999999999999987543
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=1 Score=45.82 Aligned_cols=99 Identities=9% Similarity=-0.125 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC---HHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKN---VKAY 535 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~---p~~---~~a~ 535 (580)
..+..+|..+++.|++++|++.|.++...... -.+.+.....+++..+++..+...+.++-.+- ++. ....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45678999999999999999999999886433 36788889999999999999999999986652 222 1234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 536 LRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
...|..+...++|.+|..+|..++.-..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 4557888889999999999988876543
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.72 E-value=0.59 Score=46.92 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
.+...++..+...|++.+++..+.+++..+|-+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566788889999999999999999999999999999999999999999999999988654
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.69 E-value=0.28 Score=50.57 Aligned_cols=104 Identities=14% Similarity=0.044 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHH----------HHHHHHHHh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAI----------SFYTEAIKL-----NGN-NATYYSNRAAAYLESGSFLQAEADCTKAI 525 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai----------~~~~~al~~-----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al 525 (580)
-.+..|+.....+-..|+..+.+ ..+..+++. +.. ....++.+-..|+..+.|++|.....++.
T Consensus 179 l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 179 INAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp ------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 34566776666666666655432 222223321 222 36778889999999999999999999985
Q ss_pred HcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025 526 NLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 526 ~l~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
.|.+ ...+|.+|.++...++|.+|.+++..|+...|.+..
T Consensus 259 --fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 259 --YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp --SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred --CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 3422 345677899999999999999999999999886543
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.41 E-value=4.7 Score=41.06 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCC
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN---LDKKN 531 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~---l~p~~ 531 (580)
...+.....++..+...|+|.+|.+.+.....-. ..+ .+.+......|+..+++.+|...++++-. -.+..
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 3456667789999999999999999988875421 111 46788888899999999999999988632 12333
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 532 V----KAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 532 ~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+ ..+...|..+...++|.+|..+|..+++.
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2 34566688888999999999999988764
No 256
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=90.20 E-value=3.2 Score=43.08 Aligned_cols=84 Identities=11% Similarity=-0.024 Sum_probs=69.8
Q ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 478 KQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAREMLGYYKEAIEDF 555 (580)
Q Consensus 478 g~~~~Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 555 (580)
++.++|.+.|++..+.. .-+...|..+-..|.+.|++++|++.+++..+.. .-+...|..+-.+|.+.|+.++|.+.|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 44788999999877653 2256788999999999999999999999988763 226778888889999999999999999
Q ss_pred HHHHhh
Q 008025 556 SYALVL 561 (580)
Q Consensus 556 ~~al~l 561 (580)
++-.+.
T Consensus 164 ~~M~~~ 169 (501)
T 4g26_A 164 AHMVES 169 (501)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 988765
No 257
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.00 E-value=1.6 Score=48.07 Aligned_cols=47 Identities=23% Similarity=0.100 Sum_probs=33.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 473 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
..+..|++++|.+..+ ..++...|..+|..+++.++++.|+++|.++
T Consensus 661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455666666666532 2356788888888888888888888888774
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.50 E-value=3.5 Score=35.91 Aligned_cols=82 Identities=12% Similarity=-0.055 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE 543 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~ 543 (580)
...|..+|...+.+|+++-|..+|.++- +. ..+...|.-.|+-++-.+..+.+...+. +.....++.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~---~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l 100 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQH-----SF---DKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTF 100 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CH---HHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhC-----CH---HHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHH
Confidence 3455556666666666666666655541 11 1222333334444433333333222221 111234455
Q ss_pred HcCCHHHHHHHHHHH
Q 008025 544 MLGYYKEAIEDFSYA 558 (580)
Q Consensus 544 ~~g~~~~A~~~~~~a 558 (580)
.+|+++++++.|.+.
T Consensus 101 ~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 101 YNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTCHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHC
Confidence 677777777776544
No 259
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.19 E-value=3.9 Score=35.58 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=56.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHH
Q 008025 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--------KKNVKAYLRRGTAR 542 (580)
Q Consensus 471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--------p~~~~a~~~lg~~~ 542 (580)
-....+.|+++.|.+..++. ++...|..||...+..|+++-|+++|+++-..+ -.+.+-+..++...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556779999999886654 677899999999999999999999998743221 23444455556666
Q ss_pred HHcCCHHHHHHHH
Q 008025 543 EMLGYYKEAIEDF 555 (580)
Q Consensus 543 ~~~g~~~~A~~~~ 555 (580)
...|++.-|..++
T Consensus 87 ~~~g~~n~af~~~ 99 (177)
T 3mkq_B 87 QTREDFGSMLLNT 99 (177)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCccHHHHHHHH
Confidence 6666666655544
No 260
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.66 E-value=11 Score=42.32 Aligned_cols=99 Identities=6% Similarity=-0.142 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAY 535 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~ 535 (580)
.....+..+-+.+.+.|+.++|.+.|.+..+. -.-+...|+.+-..|.+.|++++|.+.|++..+. .| +...|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Confidence 44567888999999999999999999775432 2335788999999999999999999999998775 35 67778
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhh
Q 008025 536 LRRGTAREMLGY-YKEAIEDFSYALVL 561 (580)
Q Consensus 536 ~~lg~~~~~~g~-~~~A~~~~~~al~l 561 (580)
..+-.++.+.|+ .++|.+.|++-.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 888788889897 57888999887765
No 261
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.50 E-value=5.9 Score=43.46 Aligned_cols=59 Identities=20% Similarity=0.115 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADC 521 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~ 521 (580)
+...|..+|..+.+.++++.|+++|.++-.. ..++.+.+..++......|++..|...|
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 4568899999999999999999999986221 2334444445555555555555555444
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=80.00 E-value=14 Score=39.26 Aligned_cols=94 Identities=11% Similarity=-0.046 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
.+..++..++..+...++...+.+......++ .....++...+..++++.|.+++++.-.-........|-+|.++..+
T Consensus 254 ~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~ 332 (618)
T 1qsa_A 254 LRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER 332 (618)
T ss_dssp HHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHc
Confidence 34445555555664667777787766544433 33434444556779999999999876554445688899999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 008025 546 GYYKEAIEDFSYALV 560 (580)
Q Consensus 546 g~~~~A~~~~~~al~ 560 (580)
|+.++|...|+++.+
T Consensus 333 g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 333 GREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999986
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.99 E-value=5.2 Score=46.22 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKL-----------------------NGNNATYYSNRAAAYLESGSFLQAEADCT 522 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 522 (580)
..|-+|.+++..|++++|.++|.++-.- ......+|+.....+.+.+.++.+++..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3478999999999999999999887321 11124677788888889999999999999
Q ss_pred HHHHcCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 523 KAINLDK-KNVK----AYLRRGTAREMLGYYKEAIEDFSY 557 (580)
Q Consensus 523 ~al~l~p-~~~~----a~~~lg~~~~~~g~~~~A~~~~~~ 557 (580)
.||+..+ ++.. .|.++=..+..+++|++|...+..
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 9998754 3332 577777888899999999877743
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.36 E-value=3.8 Score=42.18 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
...+..+..+-..|+..+.|++|.....++. .|.. ..+++.+|.++..+++|.+|.+++..|++..|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3556777778888999999999999999985 3322 5778889999999999999999999999887643
No 265
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.35 E-value=13 Score=41.99 Aligned_cols=97 Identities=19% Similarity=0.074 Sum_probs=73.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC--------------------
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN-LD-------------------- 528 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-l~-------------------- 528 (580)
+...+...++++-+.+ .+...|.++..-|.+|.+|+..|++++|.++|+||-. +.
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 5667777888876543 4567788888889999999999999999999987532 11
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHH
Q 008025 529 KKN--VKAYLRRGTAREMLGYYKEAIEDFSYALVL-EPTNKRASL 570 (580)
Q Consensus 529 p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~ 570 (580)
++. ...|++...++.+.+.++.+++..+.|++. .++++....
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~ 936 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI 936 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence 111 235666788889999999999999999975 556666444
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.97 E-value=38 Score=33.59 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 502 SNRAAAYLESGSFLQAEADCTKAINLDK--K----NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 502 ~~la~~~~~~~~~~~A~~~~~~al~l~p--~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
..|+..|+..|+|.+|.+.+.+.++--. + -.+.+..-..+|..++++.++.+.+.++.+..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 3789999999999999999988877421 1 13467777888999999999999999997664
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.64 E-value=13 Score=42.80 Aligned_cols=94 Identities=15% Similarity=0.020 Sum_probs=70.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C------------------
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---D------------------ 528 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---~------------------ 528 (580)
+...+.+.++++-+.+ .+...+.++...+.+|.+|+..|++++|.++|+++-.- +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4455667777766554 34566788888899999999999999999999886221 0
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHH
Q 008025 529 --KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP-TNKR 567 (580)
Q Consensus 529 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~ 567 (580)
...+..|+....++.+.+.++.+++..+.|++..+ ++..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~ 935 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 935 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh
Confidence 11234566677788899999999999999998865 4443
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.51 E-value=39 Score=27.97 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=55.4
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 477 DKQWLKAISFYTEAIKLNGNNATYYSNRAA-AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555 (580)
Q Consensus 477 ~g~~~~Ai~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 555 (580)
.|+...-+.+|.+. +- +. -+.++|. ....+|+-++-.+.+...+.-++-++..++.+|.+|.+.|+..+|.+.+
T Consensus 74 C~NlKrVi~C~~~~---n~-~s-e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NT-LN-EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp CSCTHHHHHHHHHT---TC-CC-HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcHHHHHHHHHHh---cc-hH-HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 45556666666543 21 22 2334444 3446777777777777766667777999999999999999999999999
Q ss_pred HHHHhhC
Q 008025 556 SYALVLE 562 (580)
Q Consensus 556 ~~al~l~ 562 (580)
++|-+..
T Consensus 149 ~~AC~kG 155 (172)
T 1wy6_A 149 IEACKKG 155 (172)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9988754
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.91 E-value=8.7 Score=38.88 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
-..++..+|..|++.|++++|.+.|.++..... .....++..-.++...+++..+..+++++..+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456889999999999999999999999887643 33667888888899999999999999999776
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.88 E-value=22 Score=29.38 Aligned_cols=55 Identities=18% Similarity=-0.020 Sum_probs=41.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 474 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
+..+|+-++--+.+...+.-++-++..+..+|.+|.++|+..+|.+.+.+|.+..
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3456677777777776666566678999999999999999999999998888754
No 271
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.85 E-value=36 Score=28.88 Aligned_cols=62 Identities=8% Similarity=0.084 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHH---HH-H--HHHHHHcCCHHHHHHHHHHHHHc
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYY---SN-R--AAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~---~~-l--a~~~~~~~~~~~A~~~~~~al~l 527 (580)
..+..+..+|+.|+|-+|.+.++..-...+.. ...| .. + |..+.+.|+...|...+.+++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34668889999999999999999988776543 2222 23 2 33445679999999999999874
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=62.43 E-value=13 Score=37.78 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=32.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC--C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNG--N--------NATYYSNRAAAYLESGSFLQAEADCTKAINL-DKK 530 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p--~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-~p~ 530 (580)
+-..||+.++..-+...++..-.... . ...++|.+|..++..++|.+|.+++.+|++. .|.
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 44555666666555555543322211 1 1345566666666666666666666666665 443
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=61.38 E-value=20 Score=25.90 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~ 500 (580)
..+|..+...|++++|+.+|.+|+...|+-...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 458888999999999999999999988875443
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=61.20 E-value=23 Score=25.64 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=16.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570 (580)
Q Consensus 538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 570 (580)
+|..+...|++++|..+|-+|+...|+=.+...
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444555555555555555555544444333
No 275
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=60.74 E-value=43 Score=24.85 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 493 (580)
+.+..+...|...-+.|+|++|+.+|.++++.
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44556667777778888888888888877753
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.89 E-value=1.3e+02 Score=29.03 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDF 555 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~ 555 (580)
.++..+..+|..|.+-+++.+|+.+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 56888999999999999999999887
No 277
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=59.78 E-value=18 Score=32.21 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~-----~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 535 (580)
.+.....|.+|..++.+++|.+|.+.+.+|++..|.+... +..+--+.+-+|+... .+.+++ .+. ..|
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y 83 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQF 83 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGG
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHH
Confidence 4567788999999999999999999999999998876433 3333344456677543 233332 221 246
Q ss_pred HHHHHHHHHcCCHHH
Q 008025 536 LRRGTAREMLGYYKE 550 (580)
Q Consensus 536 ~~lg~~~~~~g~~~~ 550 (580)
..+..++ +.|+...
T Consensus 84 ~~L~~Av-r~Gdl~~ 97 (203)
T 3t5x_A 84 AEVTRAV-SEGNLLL 97 (203)
T ss_dssp HHHHHHH-HHTCHHH
T ss_pred HHHHHHH-HhCCHHH
Confidence 6776555 6776533
No 278
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=58.89 E-value=44 Score=33.83 Aligned_cols=36 Identities=19% Similarity=0.048 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNN 497 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~ 497 (580)
+.+..+|.+|..++.+++|.+|.+++.+|++. .|.+
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34556677777777778888888887777777 6554
No 279
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=58.81 E-value=20 Score=31.90 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531 (580)
Q Consensus 499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~ 531 (580)
.++|.+|..++..++|.+|.+++.+|++..|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 456666666666666666666666666665544
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.41 E-value=45 Score=28.28 Aligned_cols=61 Identities=10% Similarity=0.004 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHH-HHHH--HHHcCCHHHHHHHHHHHHhh
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLR-RGTA--REMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~~-lg~~--~~~~g~~~~A~~~~~~al~l 561 (580)
-+..+..++..|+|-+|.+.++.+.+..+.. .+++.+ ++.+ +.+.|+..-|...+++++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556777888899999999999999887655 345555 5444 45789999999999999874
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.09 E-value=1.3e+02 Score=28.62 Aligned_cols=94 Identities=11% Similarity=-0.077 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCC
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGS--------FLQAEADCTKAINLDK 529 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~l~p 529 (580)
-.+.++.-+..+++.|++..|.+...-.++. .+-+......+..++..... ..+|+++..+.=...-
T Consensus 52 AidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~ 131 (312)
T 2wpv_A 52 AIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKF 131 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTT
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCC
Confidence 3445555566666666666665543333322 12233344444444433221 1223333322211122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFS 556 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~ 556 (580)
.++..|..+|..|.+-+++.+|+.+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578889999999999999999999874
No 282
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=57.65 E-value=19 Score=27.22 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
.+-.+-.++..+.+.|+|++||++..++..
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344556688999999999999998887753
No 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=56.78 E-value=55 Score=24.18 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
.+..+...|...-+.|+|++|+.+|.++++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445566677777778888888888777765
No 284
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=52.59 E-value=21 Score=26.76 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
..+..+...|...-+.|+|++|+.+|..+++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556667777777888777777777765
No 285
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=51.61 E-value=23 Score=38.03 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~ 513 (580)
+.....|...+..|+|..|.+..+.++..+|++..+...++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4556788889999999999999999999999999999999999988773
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=50.15 E-value=26 Score=26.48 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
.+-.++..+...|+|++||++.+++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555555555555555555543
No 287
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=49.67 E-value=25 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~ 497 (580)
..+|..++..|+++.|+.+|.+|+...|+-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 458999999999999999999999887763
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.59 E-value=2.5e+02 Score=29.64 Aligned_cols=89 Identities=9% Similarity=-0.013 Sum_probs=65.6
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------C
Q 008025 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-----------------------K 529 (580)
Q Consensus 473 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-----------------------p 529 (580)
..++.++++.|...|++.-..........|.+|.++.++|+.++|...|+++.+-. +
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~ 373 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQ 373 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCCh
Confidence 34567999999999877655444567788889999999999999999998876531 0
Q ss_pred --CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 530 --KN---VKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 530 --~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
.. ...-...+..+..+|...+|...++..++.
T Consensus 374 ~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 00 012355677888999999998888877764
No 289
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.59 E-value=2e+02 Score=27.37 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=55.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC----CCH----HH--HHHHHHHHH-----Hc--CCHHH-HHHHHHHHHHc--
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNG----NNA----TY--YSNRAAAYL-----ES--GSFLQ-AEADCTKAINL-- 527 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p----~~~----~~--~~~la~~~~-----~~--~~~~~-A~~~~~~al~l-- 527 (580)
.+.|..++..|++.+|+..|+..|..-| ++. ++ +..++.-|. ++ .+..+ ..+...+.+++
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAA 185 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAA 185 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHH
Confidence 4568889999999999999999987643 121 11 112222121 11 11100 00122333333
Q ss_pred -------CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025 528 -------DKKNVKAYLRRGT-AREMLGYYKEAIEDFSYALVLEPTNKR 567 (580)
Q Consensus 528 -------~p~~~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~p~~~~ 567 (580)
.|.+...-.+.|+ ..++.++|..|....++.|++.|+...
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 233 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV 233 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 2221111222232 246889999999999999999886443
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=45.57 E-value=33 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
.+..+...|...-+.|+|++|+.+|..+++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444556666666777777777777776664
No 291
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=45.31 E-value=34 Score=25.42 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
..+..+...|...-+.|+|++|+.+|..+++
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555666666677777777777777665
No 292
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.23 E-value=11 Score=29.85 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=11.3
Q ss_pred cCHHHHHHHHHHHHHhCC
Q 008025 478 KQWLKAISFYTEAIKLNG 495 (580)
Q Consensus 478 g~~~~Ai~~~~~al~~~p 495 (580)
..|++|..+.+++|+.+.
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 346667777777666653
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=43.78 E-value=28 Score=25.90 Aligned_cols=13 Identities=15% Similarity=0.043 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHc
Q 008025 515 LQAEADCTKAINL 527 (580)
Q Consensus 515 ~~A~~~~~~al~l 527 (580)
++|++...+|++.
T Consensus 17 ~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 17 EMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 294
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=43.58 E-value=32 Score=27.46 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008025 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (580)
Q Consensus 463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 492 (580)
.+..+...|...-+.++|++|+.+|..+++
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344455555556666777777776666654
No 295
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=42.68 E-value=2.3e+02 Score=26.98 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=55.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC----CC----HHH--HHHHHHHHH-----HcCCHHHHHHHHHHHHHc-----
Q 008025 468 KEKGNQAYKDKQWLKAISFYTEAIKLNG----NN----ATY--YSNRAAAYL-----ESGSFLQAEADCTKAINL----- 527 (580)
Q Consensus 468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p----~~----~~~--~~~la~~~~-----~~~~~~~A~~~~~~al~l----- 527 (580)
.+.|..++..|++.+|+..|+..|..-| ++ .++ +...+.-|. ++.+-+-..+.-.|.+++
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT 197 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFT 197 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhc
Confidence 4468888999999999999999887532 11 111 122221111 110000000011222222
Q ss_pred ----CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025 528 ----DKKNVKAYLRRGT-AREMLGYYKEAIEDFSYALVLEPTNKRASL 570 (580)
Q Consensus 528 ----~p~~~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 570 (580)
.|.....-.+.|+ ..++.++|..|....++.+++.|+...+..
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q 245 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ 245 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2211111122222 346889999999999999999997665544
No 296
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=42.56 E-value=83 Score=23.54 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=25.8
Q ss_pred hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008025 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEA 490 (580)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~a 490 (580)
..--+.+..|++-|..++++||+..|+.++.-+
T Consensus 33 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 33 EAVVERALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334467788888899999999999998887654
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.44 E-value=1.8e+02 Score=25.63 Aligned_cols=70 Identities=10% Similarity=0.002 Sum_probs=53.9
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p 529 (580)
+++.-...|...+..+ ......++.+.|.-.... .-..+..|...|..+...|++++|.+.|++.++.+-
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4566677777777665 234467888888877665 456788888999999999999999999999999764
No 298
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=41.28 E-value=31 Score=25.55 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHc
Q 008025 516 QAEADCTKAINL 527 (580)
Q Consensus 516 ~A~~~~~~al~l 527 (580)
+|++...+|++.
T Consensus 10 ~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 10 MARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 299
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=40.28 E-value=1.7e+02 Score=33.08 Aligned_cols=67 Identities=10% Similarity=-0.097 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Q 008025 498 ATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL--EPTN 565 (580)
Q Consensus 498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~ 565 (580)
...++.+-..|.+.|+.++|.+.+++.-+ ..| +...|..+-..|.+.|++++|.+.|++-.+. .|+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 35678888999999999999999977543 234 6788999999999999999999999988765 4543
No 300
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.21 E-value=2.3e+02 Score=28.31 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK---LNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~---~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
.....+.+......++..++|.+|...++++.. -.+.. ..++...|..+...++|.+|-++|.++++.
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456678888999999999999999999999743 22333 357788899999999999999999998875
No 301
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=39.42 E-value=45 Score=35.71 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008025 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547 (580)
Q Consensus 498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~ 547 (580)
.+.....|...+..|+|.-|.+.+++++..+|+|.++...++.+|.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45666788888899999999999999999999999999999999988874
No 302
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=38.18 E-value=1.4e+02 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
|..+|-+|++.+++.+|++.+.++
T Consensus 299 YtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 299 YTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchHHHHHHHHHHH
Confidence 334444555555555555444433
No 303
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=37.95 E-value=74 Score=24.14 Aligned_cols=27 Identities=4% Similarity=-0.040 Sum_probs=16.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Q 008025 469 EKGNQAYKDKQWLKAISFYTEAIKLNG 495 (580)
Q Consensus 469 ~~g~~~~~~g~~~~Ai~~~~~al~~~p 495 (580)
..|..+|+.|+|-+|-+.++..-...|
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 345566666666666666666555543
No 304
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=37.12 E-value=1.5e+02 Score=24.94 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=53.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRRGTAREML 545 (580)
Q Consensus 467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 545 (580)
.+..++..|-+.+|.+-+..+++. ....-.....|.||..|.+..++. +..+.....+.+..+ +- +.+=++|.-.
T Consensus 11 a~i~a~~afl~~dYs~VI~~L~~~-~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd--e~-yL~YWIyiGR 86 (161)
T 2ynq_A 11 AYIQSTELFLQNKYSDVITTLEDY-APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD--EQ-YMLYWIYIGR 86 (161)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTTS-CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC--HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcC-ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC--HH-HHHHHHHHcC
Confidence 355678888889999888887652 122223578888999999888764 333333333333322 11 2223566668
Q ss_pred CCHHHHHHHHH
Q 008025 546 GYYKEAIEDFS 556 (580)
Q Consensus 546 g~~~~A~~~~~ 556 (580)
|++++|+..-+
T Consensus 87 g~~~eAlDiA~ 97 (161)
T 2ynq_A 87 SQSEEALELAR 97 (161)
T ss_dssp TCHHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 89998887654
No 305
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=36.90 E-value=46 Score=25.39 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVK 533 (580)
Q Consensus 502 ~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~ 533 (580)
..+|..+...|+++.|+.+|.+|+...|+-..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45677777777777777777777777765333
No 306
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=36.16 E-value=1.9e+02 Score=28.54 Aligned_cols=63 Identities=8% Similarity=0.018 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025 462 QSAEIAKEKGNQAYKDKQ--WLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~--~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 524 (580)
..+.++-++|...-..-. ...+++.|++++.. ...+.-.|..+|-.++..++|.+|++.+.++
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhh
Confidence 334455555554432211 12355566666653 2223344445566666666666666666554
No 307
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=35.92 E-value=1.3e+02 Score=22.36 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 008025 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN 496 (580)
Q Consensus 461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~ 496 (580)
.++++.+...|..+++.++|.+|+..|+++..+..+
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten 85 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNLSDN 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccC
Confidence 367788888999999999999999999998876544
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.33 E-value=46 Score=24.38 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008025 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (580)
Q Consensus 464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 493 (580)
......+|..+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 344566888888899999999999988864
No 309
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=32.82 E-value=1.8e+02 Score=28.82 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 532 VKAYLRRGTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al 559 (580)
...|..+|-.|++.+++.+|+.++-.+-
T Consensus 318 vYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 318 IYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccceeecchhhhhcchHHHHHHHHHHHH
Confidence 3444555556666666666666655543
No 310
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=32.73 E-value=64 Score=24.05 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=8.2
Q ss_pred HHcCCHHHHHHHHHHHH
Q 008025 543 EMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 543 ~~~g~~~~A~~~~~~al 559 (580)
...|+|++|+.+|.+++
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44455555544444444
No 311
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=31.80 E-value=97 Score=31.26 Aligned_cols=30 Identities=17% Similarity=-0.024 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
...++..++.+|+..++|++|++.++++|.
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 356778888888888888888888888875
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.44 E-value=93 Score=34.92 Aligned_cols=53 Identities=8% Similarity=-0.088 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 559 (580)
Q Consensus 503 ~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 559 (580)
.+...+...++++-|. +.+..-|.++-.-|.+|.+|...|++++|.++|+++-
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3566667788887654 4556778888888999999999999999999999876
No 313
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=30.53 E-value=70 Score=24.20 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHc
Q 008025 515 LQAEADCTKAINL 527 (580)
Q Consensus 515 ~~A~~~~~~al~l 527 (580)
+.|++...+|++.
T Consensus 13 ~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 13 TAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555444
No 314
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=29.53 E-value=1.1e+02 Score=31.01 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
...++..+|.+|+..++|++|.+.++++|.
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 356777788888888888888888888775
No 315
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.34 E-value=1e+02 Score=29.40 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH-
Q 008025 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT- 540 (580)
Q Consensus 462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~- 540 (580)
-+++.+..+|..+++.+++.+|..+|-.. +.+++..+..+-.-+++.. -.-+|.....+..+++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~------------~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQV------------DDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHT------------TCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhc------------CCCCcchHHHHHHHHHH
Confidence 45677888888888888888888776521 1112333322222211110 0012333445555554
Q ss_pred HHHHcCCHHHHHHHHHHHHhh
Q 008025 541 AREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~l 561 (580)
-|..+++...|...|+...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 456889999998888876543
No 316
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=28.91 E-value=79 Score=23.33 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=6.7
Q ss_pred HcCCHHHHHHHHHHHH
Q 008025 544 MLGYYKEAIEDFSYAL 559 (580)
Q Consensus 544 ~~g~~~~A~~~~~~al 559 (580)
..|+|++|+.+|.+++
T Consensus 25 ~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGL 40 (85)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444444444444333
No 317
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=28.84 E-value=2e+02 Score=22.19 Aligned_cols=99 Identities=10% Similarity=-0.078 Sum_probs=57.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008025 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550 (580)
Q Consensus 471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 550 (580)
+..---....++|...-+. ++..++.--+-.-+...++..|+|++|....+... ++..--.++.+-.++|..++
T Consensus 13 AL~gTG~H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~ 86 (115)
T 2uwj_G 13 ALAGSGQHCHEEALCIAEW-LERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAA 86 (115)
T ss_dssp HHHHHTTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHH
T ss_pred HHHHccchHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHH
Confidence 3333334455666554443 44455544455566777788888888876654322 45555566777888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025 551 AIEDFSYALVLEPTNKRASLSADRLRK 577 (580)
Q Consensus 551 A~~~~~~al~l~p~~~~~~~~l~~l~~ 577 (580)
+...+.+.-. ..++........++.
T Consensus 87 le~rL~~la~--sg~p~~q~Fa~g~re 111 (115)
T 2uwj_G 87 LDRRLAGLGG--SSDPALADFAAGMRA 111 (115)
T ss_dssp HHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 8777733322 234444444444443
No 318
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=28.74 E-value=2e+02 Score=22.20 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=58.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK 549 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 549 (580)
++..---....++|...-+. ++..++.--+-.-+...++..|+|++|....+... ++..--.++.+-.++|..+
T Consensus 13 ~AL~gTG~H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s 86 (116)
T 2p58_C 13 IALIGTGNHYHEEANCIAEW-LHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGS 86 (116)
T ss_dssp HHHHHHTTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHH
T ss_pred HHHHHccchHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHH
Confidence 33333344455666555443 44555544455667777888899988887765432 4455556677778888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025 550 EAIEDFSYALVLEPTNKRASLSADRLRKV 578 (580)
Q Consensus 550 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 578 (580)
++...+.+.- ...++........++.+
T Consensus 87 ~le~rL~~la--~sg~p~~q~Fa~g~req 113 (116)
T 2p58_C 87 ALESRLNRLA--RSQDPRIQTFVNGMREQ 113 (116)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 8877763322 12344444444444443
No 319
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.08 E-value=1.4e+02 Score=22.66 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHH--HHHcCCHHHHHHHHHHHHhh
Q 008025 503 NRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRGTA--REMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 503 ~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l 561 (580)
..|..++..|+|-+|-+.++...+..|+. ...+.+++.+ +...|+. |...+++++..
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 45677788899999999999999888643 2345555444 4467787 99999998763
No 320
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.88 E-value=72 Score=25.38 Aligned_cols=12 Identities=25% Similarity=0.080 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 008025 515 LQAEADCTKAIN 526 (580)
Q Consensus 515 ~~A~~~~~~al~ 526 (580)
+.|++.+.+|++
T Consensus 16 ~kAi~lv~~Ave 27 (117)
T 2cpt_A 16 QKAIDLASKAAQ 27 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 321
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=27.74 E-value=1.2e+02 Score=30.89 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
...++..+|.+|+..++|++|++.+++++...
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 35678889999999999999999999998753
No 322
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=27.65 E-value=90 Score=25.18 Aligned_cols=55 Identities=5% Similarity=0.085 Sum_probs=32.3
Q ss_pred HHHHHHHccCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 470 KGNQAYKDKQWLKAISFYTEA---IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 470 ~g~~~~~~g~~~~Ai~~~~~a---l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
-...++..++.+..++.+... ++..|.. .........--.+..+|.+++++..+.
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344556788888888777665 3344543 333333333345667777777776543
No 323
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.34 E-value=1.3e+02 Score=22.48 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025 500 YYSNRAAAYLESGSFLQAEADCTKAIN 526 (580)
Q Consensus 500 ~~~~la~~~~~~~~~~~A~~~~~~al~ 526 (580)
....-|.-+++.++|.+|...++++..
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 333344444455555555555555443
No 324
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=26.73 E-value=1.2e+02 Score=30.90 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 497 NATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
...++..+|.+|+..++|++|++.++++|..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3567788888888888999999888888864
No 325
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.97 E-value=4.2e+02 Score=25.89 Aligned_cols=88 Identities=9% Similarity=0.008 Sum_probs=57.1
Q ss_pred HHHHccCHHHHHHHHHHHHHhC-------C--------CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C
Q 008025 473 QAYKDKQWLKAISFYTEAIKLN-------G--------NN--ATYYSNRAAAYLESGSFLQAEADCTKAINL-------D 528 (580)
Q Consensus 473 ~~~~~g~~~~Ai~~~~~al~~~-------p--------~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~l-------~ 528 (580)
......+.++|++.+++..+.- . .. .......+..|+..++.++|.+.++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445678888888887654321 0 01 345567788888999999999988887543 2
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025 529 KKN-VKAYLRRGTAREMLGYYKEAIEDFSYALV 560 (580)
Q Consensus 529 p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 560 (580)
|.. ...|...+..|...++|.++..++-.++.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 211 23344456666777888887777766664
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.82 E-value=2.4e+02 Score=23.86 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (580)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~ 528 (580)
+++.-...|...+... +++.+.|...... .-..+..|...|..+-..|++.+|.+.|++.++.+
T Consensus 61 nD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
No 327
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.81 E-value=3.7e+02 Score=26.03 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 008025 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL------EPTNKRASLSADRLR 576 (580)
Q Consensus 531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l~~l~ 576 (580)
....|..+|-.+++.+++.+|++++-.+-.. ..+|.+.+..+-.|-
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 346 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIA 346 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 4455666777888888888888887766543 234556665555443
No 328
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=30.28 E-value=16 Score=39.25 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 008025 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515 (580)
Q Consensus 465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 515 (580)
+.....|...+.+|+|..|.+..+.++..+|++..+...++.+|.++|--.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 455667888889999999999999999999999999999999998887543
No 329
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=23.99 E-value=1.3e+02 Score=23.31 Aligned_cols=53 Identities=8% Similarity=-0.073 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (580)
Q Consensus 466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 523 (580)
+-..+...++++|+|++|+...+..- .++.--.++.|-.++|-.+++...+.+
T Consensus 42 v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 42 VQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33456778899999999998765432 445555677888899999988877744
No 330
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.18 E-value=55 Score=25.95 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563 (580)
Q Consensus 512 ~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 563 (580)
..|++|.++..++|++|.. |.-...+..|.+.+..+++++.+..
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 3467788888888877651 1111222233445555566666654
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.74 E-value=3.8e+02 Score=23.94 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025 515 LQAEADCTKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564 (580)
Q Consensus 515 ~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 564 (580)
+++.+.|...... .-..+..|...|..+...|++++|.+.|+.+++....
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3555666665554 4456777888888899999999999999999987643
No 332
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.44 E-value=1.8e+02 Score=29.17 Aligned_cols=47 Identities=9% Similarity=-0.147 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025 515 LQAEADCTKAINLDK--------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561 (580)
Q Consensus 515 ~~A~~~~~~al~l~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 561 (580)
+..++++++|+.+-| +...++..++.+|..+++|++|.++.++++..
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 444555555554432 34568888999999999999999999999863
No 333
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.07 E-value=2e+02 Score=29.20 Aligned_cols=33 Identities=12% Similarity=-0.115 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562 (580)
Q Consensus 530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 562 (580)
+...++..+|.+|..+++|++|.++.++++...
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 345688889999999999999999999998754
No 334
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.41 E-value=89 Score=22.82 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025 501 YSNRAAAYLESGSFLQAEADCTKAINL 527 (580)
Q Consensus 501 ~~~la~~~~~~~~~~~A~~~~~~al~l 527 (580)
...+|.=|..+|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345677777888999888888888764
Done!