BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008027
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0C|A Chain A, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna
Complex In Space Group P6122
pdb|3Q0F|X Chain X, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0F|A Chain A, Crystal Structure Of Suvh5 Sra- Methylated Chh Dna Complex
pdb|3Q0D|X Chain X, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
pdb|3Q0D|A Chain A, Crystal Structure Of Suvh5 Sra- Hemi Methylated Cg Dna
Complex
Length = 167
Score = 145 bits (365), Expect = 8e-35, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 110/164 (67%), Gaps = 9/164 (5%)
Query: 219 RIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYED 278
+I+G++PGV++GD F +RMEL ++G+H SQ+GIDY+ + GE +ATSI+ SGGY D
Sbjct: 1 QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYM---KDDGGELVATSIVSSGGYND 57
Query: 279 DEDAGDVLIYTGHGG---QDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFR---YQ 332
D DVLIYTG GG + K + + Q+L GNLA++ S++ VRVIRG + Q
Sbjct: 58 VLDNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQ 117
Query: 333 GSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEM 376
SV +K YVYDGLY + + W + G G V+K+KL RI GQPE+
Sbjct: 118 SSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPEL 161
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna
Complex In Space Group P42212
Length = 167
Score = 140 bits (354), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 108/164 (65%), Gaps = 9/164 (5%)
Query: 219 RIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYED 278
+I+G++PGV++GD F +R EL ++G+H SQ+GIDY + GE +ATSI+ SGGY D
Sbjct: 1 QIIGTVPGVEVGDEFQYRXELNLLGIHRPSQSGIDY---XKDDGGELVATSIVSSGGYND 57
Query: 279 DEDAGDVLIYTGHGG---QDKLSRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFR---YQ 332
D DVLIYTG GG + K + + Q+L GNLA++ S++ VRVIRG + Q
Sbjct: 58 VLDNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQ 117
Query: 333 GSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEM 376
SV +K YVYDGLY + + W + G G V+K+KL RI GQPE+
Sbjct: 118 SSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPEL 161
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 383 FADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVF--PPFV 440
DS +P V + +S DI+ E +P+ N +D + P Y+Y+ + P +
Sbjct: 15 LQDSAPDRPSPV--ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNI 72
Query: 441 FTQGSNGAGCDCVSGCTD-RCFCAVKNGGEFAYDHNGYLL-----RGKPVIFECGAFCQC 494
++ C C+ C+ C C + YD +G LL P+IFEC C C
Sbjct: 73 DRNITHLQYCVCIDDCSSSNCMCG-QLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSC 131
Query: 495 PPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQI 550
CRNRV Q GLR RL+++R+R+ GWGVRSL I G F+CEY G +++ +A +
Sbjct: 132 WRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV 187
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 383 FADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVF--PPFV 440
DS +P V + +S DI+ E +P+ N +D + P Y+Y+ + P +
Sbjct: 14 LQDSAPDRPSPV--ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNI 71
Query: 441 FTQGSNGAGCDCVSGCTD-RCFCAVKNGGEFAYDHNGYLL-----RGKPVIFECGAFCQC 494
++ C C+ C+ C C + YD +G LL P+IFEC C C
Sbjct: 72 DRNITHLQYCVCIDDCSSSNCMCG-QLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSC 130
Query: 495 PPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQI 550
CRNRV Q GLR RL+++R+R+ GWGVRSL I G F+CEY G +++ +A +
Sbjct: 131 WRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV 186
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 383 FADSLRTKPLSVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVF--PPFV 440
DS +P V + +S DI+ E +P+ N +D + P Y+Y+ + P +
Sbjct: 16 LQDSAPDRPSPV--ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNI 73
Query: 441 FTQGSNGAGCDCVSGCTD-RCFCAVKNGGEFAYDHNGYLL-----RGKPVIFECGAFCQC 494
++ C C+ C+ C C + YD +G LL P+IFEC C C
Sbjct: 74 DRNITHLQYCVCIDDCSSSNCMCG-QLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSC 132
Query: 495 PPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQI 550
CRNRV Q GLR RL+++R+R+ GWGVRSL I G F+CEY G +++ +A +
Sbjct: 133 WRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV 188
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 9/159 (5%)
Query: 400 LSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVF--PPFVFTQGSNGAGCDCVSGCT 457
+S DI+ E +P+ N +D + P Y+Y+ + P + ++ C C+ C+
Sbjct: 5 VSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCS 64
Query: 458 D-RCFCAVKNGGEFAYDHNGYLL-----RGKPVIFECGAFCQCPPTCRNRVSQRGLRNRL 511
C C + YD +G LL P+IFEC C C CRNRV Q GLR RL
Sbjct: 65 SSNCMCG-QLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARL 123
Query: 512 EVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQI 550
+++R+R+ GWGVRSL I G F+CEY G +++ +A +
Sbjct: 124 QLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV 162
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
Query: 393 SVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPF--VFTQGSNGAGC 450
++R + + D++ ENVP+ N +DG+ P Y+Y+ + ++ C
Sbjct: 5 AIRTEKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHC 64
Query: 451 DCVSGCTD-RCFCAVKNGGEFAYDHNGYLLRG-----KPVIFECGAFCQCPPTCRNRVSQ 504
CV C+ C C + YD +G LL+ P+IFEC C C C+NRV Q
Sbjct: 65 TCVDDCSSSNCLCG-QLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQ 123
Query: 505 RGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQI 550
G++ RL+++R+ + GWGVR+L I G FICEY G +++ +A +
Sbjct: 124 SGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADV 169
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
Query: 393 SVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQG--SNGAGC 450
++R + + D++ ENVP+ N +DG+ P Y+Y+ + ++ C
Sbjct: 3 AIRTEKIICRDVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHC 62
Query: 451 DCVSGCTD-RCFCAVKNGGEFAYDHNGYLLRG-----KPVIFECGAFCQCPPTCRNRVSQ 504
CV C+ C C + YD +G LL+ P+IFEC C C C+NRV Q
Sbjct: 63 TCVDDCSSSNCLCG-QLSIRCWYDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQ 121
Query: 505 RGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQI 550
G++ RL+++R+ + GWGVR+L I G FICEY G +++ +A +
Sbjct: 122 SGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADV 167
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg,
Crystal Structure In Space Group C222(1)
Length = 212
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 222 GSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDED 281
G IPGV +G ++ FR+++ G+H AGI +S +G A S++++GGYEDD D
Sbjct: 8 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH----GRSNDG---AYSLVLAGGYEDDVD 60
Query: 282 AGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAMERSMH--------------YGIE 322
G+ YTG GG+D + + Q QKL N A+ + H G
Sbjct: 61 NGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKP 120
Query: 323 VRVIR---GFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSA 379
VRV+R G ++ ++ YDG+YK+ W + GKSGF V++Y L R + +PE
Sbjct: 121 VRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPE--PW 178
Query: 380 ILRFADSLRTKPLSVR-PKGYL 400
D R L+++ P+GYL
Sbjct: 179 TREGKDRTRQLGLTMQYPEGYL 200
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1
pdb|2ZO1|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 2
pdb|2ZO2|B Chain B, Mouse Np95 Sra Domain Non-Specific Dna Complex
pdb|3F8I|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3F8I|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg,
Crystal Structure In Space Group P21
pdb|3FDE|A Chain A, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
pdb|3FDE|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-Methylated Cpg Dna,
Crystal Structure In Space Group C222(1) At 1.4 A
Resolution
Length = 212
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 222 GSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDED 281
G IPGV +G ++ FR+++ G+H AGI +S +G A S++++GGYEDD D
Sbjct: 8 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH----GRSNDG---AYSLVLAGGYEDDVD 60
Query: 282 AGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAMERSMH--------------YGIE 322
G+ YTG GG+D + + Q QKL N A+ + H G
Sbjct: 61 NGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKP 120
Query: 323 VRVIR---GFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSA 379
VRV+R G ++ ++ YDG+YK+ W + GKSGF V++Y L R + +PE
Sbjct: 121 VRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPE--PW 178
Query: 380 ILRFADSLRTKPLSVR-PKGYL 400
D R L+++ P+GYL
Sbjct: 179 TREGKDRTRQLGLTMQYPEGYL 200
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKD|B Chain B, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKE|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKF|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In
Complex With Hemi-Methylated Cpg Dna
pdb|2ZKG|A Chain A, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|B Chain B, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|C Chain C, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
pdb|2ZKG|D Chain D, Crystal Structure Of Unliganded Sra Domain Of Mouse Np95
Length = 210
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 29/176 (16%)
Query: 222 GSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDED 281
G IPGV +G ++ FR+++ G+H AGI +S +G A S++++GGYEDD D
Sbjct: 21 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIH----GRSNDG---AYSLVLAGGYEDDVD 73
Query: 282 AGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAMERSMH--------------YGIE 322
G+ YTG GG+D + + Q QKL N A+ + H G
Sbjct: 74 NGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKP 133
Query: 323 VRVIR---GFRYQGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPE 375
VRV+R G ++ ++ YDG+YK+ W + GKSGF V++Y L R + +PE
Sbjct: 134 VRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPE 189
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1
Protein
Length = 239
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 37/205 (18%)
Query: 222 GSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDED 281
G IPG+ +G ++ FR+++ G+H AGI +S +G A S++++GGYEDD D
Sbjct: 15 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH----GRSNDG---AYSLVLAGGYEDDVD 67
Query: 282 AGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAM---------------ERSMHYGI 321
G+ YTG GG+D + + Q QKL N A+ + G
Sbjct: 68 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 127
Query: 322 EVRVIRGFRYQGSVSSKVYV-----YDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEM 376
VRV+R + G +SK YDG+YK+ W + GKSGF V++Y L R + +P
Sbjct: 128 PVRVVRNVK--GGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP-- 183
Query: 377 GSAILRFADSLRTKPLSVR-PKGYL 400
G D ++ L+++ P+GYL
Sbjct: 184 GPWTKEGKDRIKKLGLTMQYPEGYL 208
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 409 ENVPVLLFNDIDG------DYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCT----D 458
E V L N++D D++ + L + V PP Q +G C + GC
Sbjct: 26 EGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQ--SGCNCSSLGGCDLNNPS 83
Query: 459 RCFCA--VKNGGEFAYDHNGYLLRGK-PVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFR 515
RC C + FAYD G + VI+EC +FC C C NRV QRG LE+F+
Sbjct: 84 RCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFK 143
Query: 516 SRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGD 556
++E GWGVRSL AG FI Y G V+T +A N D
Sbjct: 144 TKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYD 184
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|B Chain B, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|C Chain C, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
pdb|3CLZ|D Chain D, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To
Methylated Dna
Length = 212
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 37/205 (18%)
Query: 222 GSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDED 281
G IPG+ +G ++ FR+++ G+H AGI +S +G A S++++GGYEDD D
Sbjct: 7 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH----GRSNDG---AYSLVLAGGYEDDVD 59
Query: 282 AGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAM---------------ERSMHYGI 321
G+ YTG GG+D + + Q QKL N A+ + G
Sbjct: 60 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 119
Query: 322 EVRVIRGFRYQGSVSSKVYV-----YDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEM 376
VRV+R + G +SK YDG+YK+ W + GKSGF V++Y L R + +P
Sbjct: 120 PVRVVRNVK--GGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP-- 175
Query: 377 GSAILRFADSLRTKPLSVR-PKGYL 400
G D ++ L+++ P+GYL
Sbjct: 176 GPWTKEGKDRIKKLGLTMQYPEGYL 200
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain
Length = 208
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 37/205 (18%)
Query: 222 GSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDED 281
G IPG+ +G ++ FR+++ G+H AGI +S +G A S++++GGYEDD D
Sbjct: 10 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIH----GRSNDG---AYSLVLAGGYEDDVD 62
Query: 282 AGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAM---------------ERSMHYGI 321
G+ YTG GG+D + + Q QKL N A+ + G
Sbjct: 63 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 122
Query: 322 EVRVIRGFRYQGSVSSKVYV-----YDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEM 376
VRV+R + G +SK YDG+YK+ W + GKSGF V++Y L R + +P
Sbjct: 123 PVRVVRNVK--GGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP-- 178
Query: 377 GSAILRFADSLRTKPLSVR-PKGYL 400
G D ++ L+++ P+GYL
Sbjct: 179 GPWTKEGKDRIKKLGLTMQYPEGYL 203
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf1
Length = 212
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 37/205 (18%)
Query: 222 GSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDED 281
G IPG+ +G + FR+++ G+H AGI +S +G A S++++GGYEDD D
Sbjct: 7 GPIPGIPVGTXWRFRVQVSESGVHRPHVAGIH----GRSNDG---AYSLVLAGGYEDDVD 59
Query: 282 AGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAM---------------ERSMHYGI 321
G+ YTG GG+D + + Q QKL N A+ + G
Sbjct: 60 HGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGK 119
Query: 322 EVRVIRGFRYQGSVSSKVYV-----YDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEM 376
VRV+R + G +SK YDG+YK+ W + GKSGF V++Y L R + +P
Sbjct: 120 PVRVVRNVK--GGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDEP-- 175
Query: 377 GSAILRFADSLRTKPLSVR-PKGYL 400
G D ++ L+ + P+GYL
Sbjct: 176 GPWTKEGKDRIKKLGLTXQYPEGYL 200
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 449 GCDCVSGCTDRCFCAVKNGGEFAYDHNGYL-------LRGKPVIFECGAFCQCPPTCRNR 501
GC CV C+ GE YD N L +PV FEC C+C CRNR
Sbjct: 61 GCICVKTPCLPGTCSCLRHGE-NYDDNSCLRDIGSGGKYAEPV-FECNVLCRCSDHCRNR 118
Query: 502 VSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQ 549
V Q+GL+ +VF++ + GWG+R+L+ I G F+CEYAG VL + Q
Sbjct: 119 VVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQ 166
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 413 VLLFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDRCFCAVKNGGEFAY 472
+ + N +D + P + Y+ P + GC C +C C + G AY
Sbjct: 44 IFVENTVDLEGPPSDFYYINEYKPAPGISLVNEATFGCSCTDCFFQKC-CPAEAGVLLAY 102
Query: 473 DHNGYLL--RGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFR-SRETGWGVRSLDLI 529
+ N + G P I+EC + CQC P C NR+ Q+G + L +FR S GWGV++L I
Sbjct: 103 NKNQQIKIPPGTP-IYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKI 161
Query: 530 HAGAFICEYAGVVLTMEQA----QIFSMNGDSLIY-----PNRFSARWGEWGDLSQM 577
+F+ EY G V+T E+A Q + G + ++ + F+ +G++S
Sbjct: 162 KRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHF 218
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
pdb|3OLN|B Chain B, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
Length = 231
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 35/179 (19%)
Query: 222 GSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDED 281
G IPG+ +G + FR+++ G+H GI +S +G A S++++GG+ D+ D
Sbjct: 31 GPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIH----GRSNDG---AYSLVLAGGFADEVD 83
Query: 282 AGDVLIYTGHGGQD-----KLSRQCEHQKLEGGNLAM---------------ERSMHYGI 321
GD YTG GG++ ++ Q L N A+ R+ G
Sbjct: 84 RGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGK 143
Query: 322 EVRVIRGFRYQGSVSSKVYV-----YDGLYKIHDCWFDVGKS-GFGVYKYKLLRIEGQP 374
VRVIR F +G SK YDG+YK+ W ++ S GF V++Y L R + +P
Sbjct: 144 PVRVIRSF--KGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEP 200
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 478 LLRGKPVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICE 537
+L+ + I+EC C C C NRV +RG L++FR+++ GWGV+ I G F+
Sbjct: 102 VLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDR 161
Query: 538 YAGVVLTMEQA 548
Y G ++T E+A
Sbjct: 162 YLGEIITSEEA 172
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 483 PVIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVV 542
P CG C C R+ + LE FR+ E GWG+R+ + + AG FI EY G V
Sbjct: 53 PNTCPCGEQC-----CNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEV 107
Query: 543 LTMEQ 547
++ ++
Sbjct: 108 VSEQE 112
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 484 VIFECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVL 543
++ EC + C C NR QR +EV + + GWG+R+ + + F+ EY G VL
Sbjct: 92 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVL 151
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 484 VIFECG-AFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVV 542
+++EC C C+N+ + +E+FR+ + GWG+R+ I G F+ EY G +
Sbjct: 66 LLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGEL 125
Query: 543 LTMEQAQ 549
+ E+ +
Sbjct: 126 IDEEECR 132
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38
(Atcyp38)
Length = 369
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 269 SIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQKLEGGNLAMERSMHY--GIEVRVI 326
SIIV+G E +D G+ +I G + + E +K + + + Y GIE ++
Sbjct: 91 SIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMV 150
Query: 327 RGFRYQ--------------GSVSSKVYVYDGLYKIHDCWFDVGKSGF 360
GF Y+ SV KV + D I DC F + G+
Sbjct: 151 DGFPYEVPEEYRNMPLLKGRASVDMKVKIKDN-PNIEDCVFRIVLDGY 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,133,521
Number of Sequences: 62578
Number of extensions: 732409
Number of successful extensions: 1374
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 26
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)