Query 008027
Match_columns 580
No_of_seqs 315 out of 1189
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 18:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00466 SRA SET and RING fi 100.0 1.8E-59 4E-64 441.7 17.1 153 218-373 2-155 (155)
2 PF02182 SAD_SRA: SAD/SRA doma 100.0 2.9E-55 6.3E-60 414.0 14.3 151 219-373 2-155 (155)
3 KOG1082 Histone H3 (Lys9) meth 100.0 3E-34 6.5E-39 303.2 13.3 208 335-578 31-276 (364)
4 PF05033 Pre-SET: Pre-SET moti 99.9 4.1E-22 8.8E-27 174.7 5.9 99 403-501 1-103 (103)
5 KOG4442 Clathrin coat binding 99.8 1E-21 2.2E-26 216.6 6.0 135 424-577 40-196 (729)
6 smart00468 PreSET N-terminal t 99.8 6.7E-21 1.5E-25 166.5 7.7 92 402-493 2-98 (98)
7 KOG1141 Predicted histone meth 99.8 1.7E-21 3.7E-26 215.9 3.5 153 397-550 671-840 (1262)
8 KOG1079 Transcriptional repres 99.6 4.5E-16 9.8E-21 171.6 5.3 113 446-577 538-668 (739)
9 KOG1141 Predicted histone meth 99.0 3.7E-10 8E-15 127.1 7.5 157 393-550 869-1054(1262)
10 KOG1083 Putative transcription 98.6 3.6E-09 7.8E-14 121.9 -1.2 80 498-577 1166-1253(1306)
11 KOG1080 Histone H3 (Lys4) meth 98.5 8.7E-08 1.9E-12 112.7 4.3 69 510-578 867-943 (1005)
12 smart00317 SET SET (Su(var)3-9 98.3 1.9E-06 4.1E-11 74.4 6.7 68 510-577 1-76 (116)
13 smart00570 AWS associated with 96.9 0.00041 8.8E-09 55.0 1.1 42 447-507 3-50 (51)
14 KOG1085 Predicted methyltransf 96.6 0.0028 6.1E-08 66.0 4.9 47 505-551 252-298 (392)
15 COG2940 Proteins containing SE 96.3 0.0019 4.2E-08 71.6 2.3 93 486-578 309-409 (480)
16 COG3440 Predicted restriction 93.8 0.00061 1.3E-08 70.9 -10.6 138 226-370 10-149 (301)
17 PF00856 SET: SET domain; Int 88.2 0.42 9.2E-06 42.5 3.0 31 520-550 1-31 (162)
18 KOG1171 Metallothionein-like p 33.5 14 0.0003 40.9 -0.0 35 446-500 216-252 (406)
19 KOG1081 Transcription factor N 33.3 13 0.00028 41.8 -0.2 74 488-577 293-374 (463)
20 PF03638 TCR: Tesmin/TSO1-like 30.6 28 0.00061 26.8 1.2 36 447-502 3-40 (42)
21 PHA02662 ORF131 putative membr 29.6 2.5E+02 0.0054 29.1 8.0 33 145-177 58-90 (226)
22 PF08207 EFP_N: Elongation fac 28.0 1.6E+02 0.0035 23.6 5.3 36 336-371 7-43 (58)
23 KOG3813 Uncharacterized conser 26.8 34 0.00073 39.1 1.5 19 446-464 306-325 (640)
24 PRK03999 translation initiatio 26.3 98 0.0021 29.0 4.3 40 336-375 13-54 (129)
25 KOG1924 RhoA GTPase effector D 22.6 1.9E+02 0.004 35.2 6.4 7 120-126 632-638 (1102)
26 COG1245 Predicted ATPase, RNas 21.5 1.1E+02 0.0023 35.2 4.1 56 481-537 43-105 (591)
27 PF12218 End_N_terminal: N ter 20.2 36 0.00077 28.6 0.1 21 355-375 39-59 (67)
No 1
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=100.00 E-value=1.8e-59 Score=441.71 Aligned_cols=153 Identities=60% Similarity=1.000 Sum_probs=145.4
Q ss_pred CCeeccCCCccCCceechHHHHHHhccCCCCCCCcccccCCCCCCCCCcEEEEEEcCCCCCCCCCCCeEEEEcCCCCCCC
Q 008027 218 KRIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKL 297 (580)
Q Consensus 218 kri~G~vpGV~vGd~F~~R~el~~~GlH~~~~aGId~~~~~~~~~g~~~A~SIV~SGgY~dD~D~Gd~liYtG~GG~~~~ 297 (580)
+++||+||||+|||+|++|+||+++|||+++|+|||+++.+ +++++|+|||+||||+||+|+||+|+|||+||++..
T Consensus 2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~---~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~~ 78 (155)
T smart00466 2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTAD---EGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDMT 78 (155)
T ss_pred CceEeCCCCccCCCEEcchhHhhhhcccCcccCCccccccc---CCCccEEEEEECCCccCcccCCCEEEEEccCCccCC
Confidence 46789999999999999999999999999999999998643 688999999999999999999999999999999988
Q ss_pred CccccCCccchhhHHHHHhhhcCCeEEEEecccc-CCCcccceeEecCeEEEEEEEEecCCCceeEEEEeEEeecCC
Q 008027 298 SRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRY-QGSVSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQ 373 (580)
Q Consensus 298 ~~q~~DQkle~gNlAL~~S~~~~~PVRVIRg~k~-~~~~p~~gYrYDGLY~V~~~w~e~gk~G~~V~kFkL~R~~gQ 373 (580)
++|..||+|++||+||++||++++|||||||++. ....|.++|||||||+|+++|.++|++||.||||+|+|+|||
T Consensus 79 ~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ 155 (155)
T smart00466 79 HGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155 (155)
T ss_pred CCCccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence 8999999999999999999999999999999994 445699999999999999999999999999999999999998
No 2
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=100.00 E-value=2.9e-55 Score=414.01 Aligned_cols=151 Identities=57% Similarity=0.974 Sum_probs=123.2
Q ss_pred CeeccCCCccCCceechHHHHHHhccCCCCCCCcccccCCCCCCCCCcEEEEEEcCCCCCCCCCCCeEEEEcCCCCCCC-
Q 008027 219 RIVGSIPGVQIGDVFFFRMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKL- 297 (580)
Q Consensus 219 ri~G~vpGV~vGd~F~~R~el~~~GlH~~~~aGId~~~~~~~~~g~~~A~SIV~SGgY~dD~D~Gd~liYtG~GG~~~~- 297 (580)
++|||||||+|||||++|+||+++|||+++|+||++++ .+|.++|+|||+||+|+||+|+||+|||||+||++..
T Consensus 2 k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~----~~g~~~A~SIV~Sg~y~dd~D~gd~l~YtG~gg~~~~~ 77 (155)
T PF02182_consen 2 KRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMK----KEGGPVAYSIVLSGGYEDDEDNGDVLIYTGQGGNDLSG 77 (155)
T ss_dssp TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEET----TTESEEEEEEEESSSSTTCEECSSEEEEE-SSSB--TT
T ss_pred CcEeCCCCccCccEEhHHHHHhHhccCCCccCCeeccc----CCCceeeEEEEECCCcccccCCCCEEEEEcCCCccccc
Confidence 56899999999999999999999999999999999975 3455889999999999999999999999999999865
Q ss_pred CccccCCccchhhHHHHHhhhcCCeEEEEeccccCCC-cccce-eEecCeEEEEEEEEecCCCceeEEEEeEEeecCC
Q 008027 298 SRQCEHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGS-VSSKV-YVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQ 373 (580)
Q Consensus 298 ~~q~~DQkle~gNlAL~~S~~~~~PVRVIRg~k~~~~-~p~~g-YrYDGLY~V~~~w~e~gk~G~~V~kFkL~R~~gQ 373 (580)
.+|..||+|++||+||++|+++++|||||||++..+. +|..+ |||||||+|+++|.+++++|+.||||+|+|+|||
T Consensus 78 ~~~~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~~~~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~kF~L~R~~gQ 155 (155)
T PF02182_consen 78 NKQPKDQKLERGNLALANSMKTGNPVRVIRGYKLKSSYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFKFKLVRLPGQ 155 (155)
T ss_dssp T-B-S---SSHHHHHHHHHSGGS-EEEEEEEGGGGGTTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE-TSS
T ss_pred ccccccccccchhHHHHHHHhcCCCeEEEeecCCCCccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEEEEEEECCCC
Confidence 6799999999999999999999999999999998766 47777 9999999999999999999999999999999999
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3e-34 Score=303.20 Aligned_cols=208 Identities=37% Similarity=0.601 Sum_probs=172.5
Q ss_pred cccceeEecCeEEEEEEEEecCCCceeEEEEeEEeecCCCCCcchhhhhcccccCCCCCcCCCccccccccccccCcceE
Q 008027 335 VSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRIEGQPEMGSAILRFADSLRTKPLSVRPKGYLSLDISGKKENVPVL 414 (580)
Q Consensus 335 ~p~~gYrYDGLY~V~~~w~e~gk~G~~V~kFkL~R~~gQp~l~s~~~k~a~~l~~~p~s~r~~g~i~~DIS~G~E~~PI~ 414 (580)
.....++|+|.+.+...|. .+.....+.+.+..||+.|.|++||+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~d~~~~~e~~~v~ 75 (364)
T KOG1082|consen 31 LDSLGLRPKGIASDIVAGM-----------------------------------ANDKDKLEAKSELEDIALGSENLPVP 75 (364)
T ss_pred cCccccccCCceeeehhhh-----------------------------------cccccccccccccccccCccccCcee
Confidence 4567788888888887666 01111223457789999999999999
Q ss_pred eeecCCCCCCCCccEEeeeccCCCCcccCCCCCCCcccCCCCCCC----CccccccCCCccccCCC---ceecCCCeeee
Q 008027 415 LFNDIDGDYEPLYYEYLVRTVFPPFVFTQGSNGAGCDCVSGCTDR----CFCAVKNGGEFAYDHNG---YLLRGKPVIFE 487 (580)
Q Consensus 415 vvN~vD~e~~P~~F~YI~~~~~~~~~~~~~~~~~gC~C~~~C~~~----C~C~~~ngg~~~Y~~~G---~Lv~~~~li~E 487 (580)
++|+||++.. ..|+||++.++..+.........+|.|.+.|... |.|...|++.++|+.+| .+...+.++||
T Consensus 76 ~~n~id~~~~-~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~E 154 (364)
T KOG1082|consen 76 LVNRIDEDAP-LYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFE 154 (364)
T ss_pred eeeeccCCcc-ccceeccccccCccccccCccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccc
Confidence 9999998776 8899999999998644444578899999988752 99999999999999988 67778889999
Q ss_pred CCCCCCCCccccccccccCccccEEEEeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHHHhcCCC--------eee
Q 008027 488 CGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNGD--------SLI 559 (580)
Q Consensus 488 C~~~C~C~~~C~NRvvQrG~~~~LeVFrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~~d~~gd--------~yl 559 (580)
|++.|+|+..|.|||+|+|++.+||||+|..+|||||+++.|++|+|||||+||+++.+|++++..+++ .++
T Consensus 155 C~~~C~C~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~ 234 (364)
T KOG1082|consen 155 CSVACGCHPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSI 234 (364)
T ss_pred cccCCCCCCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999996532221 111
Q ss_pred e-----------------------CCCcccCcccCCCcccce
Q 008027 560 Y-----------------------PNRFSARWGEWGDLSQMK 578 (580)
Q Consensus 560 f-----------------------~~~~~~D~~~kGNlSr~~ 578 (580)
+ ...+.+|+...||.+||.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~Rfi 276 (364)
T KOG1082|consen 235 ADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFI 276 (364)
T ss_pred hhccccccccccccccccccccCCCcceEEchhhcccccccc
Confidence 1 123456999999999984
No 4
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.85 E-value=4.1e-22 Score=174.73 Aligned_cols=99 Identities=45% Similarity=0.886 Sum_probs=73.8
Q ss_pred cccccccCcceEeeecCCCCCCCCccEEeeeccCCCCcc-cCCCCCCCcccCCCCC--CCCccccccCCCccccCCCcee
Q 008027 403 DISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVF-TQGSNGAGCDCVSGCT--DRCFCAVKNGGEFAYDHNGYLL 479 (580)
Q Consensus 403 DIS~G~E~~PI~vvN~vD~e~~P~~F~YI~~~~~~~~~~-~~~~~~~gC~C~~~C~--~~C~C~~~ngg~~~Y~~~G~Lv 479 (580)
|||+|+|.+||+++|++|++.+|+.|+||.++++..++. .......||+|.+.|. .+|.|..++++.++|+.+|+|.
T Consensus 1 Dis~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~ 80 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLR 80 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS-TBGGGTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBS
T ss_pred CCCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccccccccCccCccCCCCCCCCCCcCccccCccccccCCCcCc
Confidence 899999999999999999998889999999999999875 2345788999999993 4899999998889999999998
Q ss_pred -cCCCeeeeCCCCCCCCcccccc
Q 008027 480 -RGKPVIFECGAFCQCPPTCRNR 501 (580)
Q Consensus 480 -~~~~li~EC~~~C~C~~~C~NR 501 (580)
....+||||++.|.|+.+|+||
T Consensus 81 ~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 81 IPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp SSSTSEEE---TTSSS-TTSTT-
T ss_pred cCCCCeEEeCCCCCCCCCCCCCC
Confidence 6788999999999999999998
No 5
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1e-21 Score=216.61 Aligned_cols=135 Identities=23% Similarity=0.442 Sum_probs=104.7
Q ss_pred CCCccEEeeeccCCCCcc-cCCC-CCCCcccCCC----------CCCCCccccccCCCccccCCCceecCCCeeeeCCC-
Q 008027 424 EPLYYEYLVRTVFPPFVF-TQGS-NGAGCDCVSG----------CTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGA- 490 (580)
Q Consensus 424 ~P~~F~YI~~~~~~~~~~-~~~~-~~~gC~C~~~----------C~~~C~C~~~ngg~~~Y~~~G~Lv~~~~li~EC~~- 490 (580)
.|..|+-+..+.|...-. .... ...-|+|... |+.+|.|.. ...||++
T Consensus 40 ~~~~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~~CiNr~-------------------t~iECs~~ 100 (729)
T KOG4442|consen 40 ALTKFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGEDCINRM-------------------TSIECSDR 100 (729)
T ss_pred cchhhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCccccchh-------------------hhcccCCc
Confidence 355565555555553321 1111 4567999862 444555533 2579999
Q ss_pred CCC-CCccccccccccCccccEEEEeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHH----HhcCC--CeeeeC--
Q 008027 491 FCQ-CPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQI----FSMNG--DSLIYP-- 561 (580)
Q Consensus 491 ~C~-C~~~C~NRvvQrG~~~~LeVFrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~----~d~~g--d~ylf~-- 561 (580)
.|. |+..|.|+.+|+....+++||+|++|||||||..+|++|+||.||+||||+.+|+++ |+.+| +.|++.
T Consensus 101 ~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~ 180 (729)
T KOG4442|consen 101 ECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQ 180 (729)
T ss_pred cCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEec
Confidence 799 999999999999999999999999999999999999999999999999999999986 45555 455554
Q ss_pred CCcccCcccCCCcccc
Q 008027 562 NRFSARWGEWGDLSQM 577 (580)
Q Consensus 562 ~~~~~D~~~kGNlSr~ 577 (580)
....+||+.|||+|||
T Consensus 181 ~~e~IDAT~KGnlaRF 196 (729)
T KOG4442|consen 181 GGEYIDATKKGNLARF 196 (729)
T ss_pred CCceecccccCcHHHh
Confidence 4567899999999998
No 6
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.83 E-value=6.7e-21 Score=166.50 Aligned_cols=92 Identities=46% Similarity=0.829 Sum_probs=83.6
Q ss_pred ccccccccCcceEeeecCCCCCCCCccEEeeeccCCCCcc--cCCCCCCCcccCCCCCCC--CccccccCCCccc-cCCC
Q 008027 402 LDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVF--TQGSNGAGCDCVSGCTDR--CFCAVKNGGEFAY-DHNG 476 (580)
Q Consensus 402 ~DIS~G~E~~PI~vvN~vD~e~~P~~F~YI~~~~~~~~~~--~~~~~~~gC~C~~~C~~~--C~C~~~ngg~~~Y-~~~G 476 (580)
.|||+|+|++||++||+||++.+|..|+||++++++.++. ....+..||+|.++|.+. |.|.+++++.|+| ..++
T Consensus 2 ~Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~~~C~C~~~~~~~~~Y~~~~~ 81 (98)
T smart00468 2 LDISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSSNKCECARKNGGEFAYELNGG 81 (98)
T ss_pred ccccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCCCcCCcHhhcCCccCcccCCC
Confidence 6999999999999999999998889999999999999874 345689999999999974 9999999999999 6777
Q ss_pred ceecCCCeeeeCCCCCC
Q 008027 477 YLLRGKPVIFECGAFCQ 493 (580)
Q Consensus 477 ~Lv~~~~li~EC~~~C~ 493 (580)
.++..+++|||||+.|+
T Consensus 82 ~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 82 LRLKRKPLIYECNSRCS 98 (98)
T ss_pred EEeCCCCEEEcCCCCCC
Confidence 78888999999999985
No 7
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.83 E-value=1.7e-21 Score=215.94 Aligned_cols=153 Identities=30% Similarity=0.541 Sum_probs=123.7
Q ss_pred CccccccccccccCcceEeeecCCCCCCCCccEEeeeccCCCCccc--CCCCCCCcccCCCCCC--CCccccccC-----
Q 008027 397 KGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPFVFT--QGSNGAGCDCVSGCTD--RCFCAVKNG----- 467 (580)
Q Consensus 397 ~g~i~~DIS~G~E~~PI~vvN~vD~e~~P~~F~YI~~~~~~~~~~~--~~~~~~gC~C~~~C~~--~C~C~~~ng----- 467 (580)
+++.+.||+.|+|.+||.++|++|..+ |+.|.|-.+.+...+.+. ..++..+|+|..+|.+ .|+|.+...
T Consensus 671 p~~~~~Di~~g~e~vpis~~neids~~-lpq~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t 749 (1262)
T KOG1141|consen 671 PGNRCTDIPCGREHVPISEKNEIDSHR-LPQAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTT 749 (1262)
T ss_pred CcceeccccCCccccccceeecccCcC-CccchhheeeccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhcc
Confidence 467889999999999999999999876 447999877777666552 3468999999999986 699986421
Q ss_pred ---CCccccC---CCceec-CCCeeeeCCCCCCCC-ccccccccccCccccEEEEeccCCCcceeecCCCCCCCeEEEee
Q 008027 468 ---GEFAYDH---NGYLLR-GKPVIFECGAFCQCP-PTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYA 539 (580)
Q Consensus 468 ---g~~~Y~~---~G~Lv~-~~~li~EC~~~C~C~-~~C~NRvvQrG~~~~LeVFrT~~kGWGVRa~~~I~kG~FIcEYv 539 (580)
+..+-+. -.+|.+ .+.-+|||+..|+|. +.|.||++|+|.+++|++|+|..||||+|++++|.+|.|||-|.
T Consensus 750 ~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~ 829 (1262)
T KOG1141|consen 750 GPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYP 829 (1262)
T ss_pred CCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEec
Confidence 1111110 012322 233589999999975 69999999999999999999999999999999999999999999
Q ss_pred eeeeCHHHHHH
Q 008027 540 GVVLTMEQAQI 550 (580)
Q Consensus 540 GEvIt~~Eae~ 550 (580)
|-+++++-+++
T Consensus 830 g~~l~~~~sdk 840 (1262)
T KOG1141|consen 830 GGALLHQISDK 840 (1262)
T ss_pred chhhhhhhchh
Confidence 99999988875
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.60 E-value=4.5e-16 Score=171.60 Aligned_cols=113 Identities=25% Similarity=0.513 Sum_probs=95.0
Q ss_pred CCCCcccCCCCCCC-CccccccCCCccccCCCceecCCCeeeeCCCC-CCC-C---------ccccccccccCccccEEE
Q 008027 446 NGAGCDCVSGCTDR-CFCAVKNGGEFAYDHNGYLLRGKPVIFECGAF-CQC-P---------PTCRNRVSQRGLRNRLEV 513 (580)
Q Consensus 446 ~~~gC~C~~~C~~~-C~C~~~ngg~~~Y~~~G~Lv~~~~li~EC~~~-C~C-~---------~~C~NRvvQrG~~~~LeV 513 (580)
...||.|..-|..+ |+|.+. ..||.|. |.| + .+|.|--+|+|.+.++.+
T Consensus 538 rF~GC~Ck~QC~tkqCpC~~A-------------------~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~ll 598 (739)
T KOG1079|consen 538 RFPGCRCKAQCNTKQCPCYLA-------------------VRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLL 598 (739)
T ss_pred cCCCCCcccccccCcCchhhh-------------------ccccCchHHhccCcccccccCccccccchhhhhhhcceee
Confidence 34566665556553 666442 5799964 774 3 389999999999999999
Q ss_pred EeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHHH----hcCCCeeeeC--CCcccCcccCCCcccc
Q 008027 514 FRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIF----SMNGDSLIYP--NRFSARWGEWGDLSQM 577 (580)
Q Consensus 514 FrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~~----d~~gd~ylf~--~~~~~D~~~kGNlSr~ 577 (580)
-.+.-.|||+|.++.+.|++||.||+||+|+++||++| |....+|+|+ .+|.+|+.++||++||
T Consensus 599 apSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~dyviDs~rkGnk~rF 668 (739)
T KOG1079|consen 599 APSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNNDYVIDSTRKGNKIRF 668 (739)
T ss_pred chhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccccceEeeeeecchhhh
Confidence 99999999999999999999999999999999999985 5677889998 4678899999999998
No 9
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.03 E-value=3.7e-10 Score=127.12 Aligned_cols=157 Identities=28% Similarity=0.449 Sum_probs=112.4
Q ss_pred CcCCCccccccccccccCcceEeeecCCCCCCCCccEEeeeccCCCC---cc-cCCCCCCCcccCCCCCC--CCcccccc
Q 008027 393 SVRPKGYLSLDISGKKENVPVLLFNDIDGDYEPLYYEYLVRTVFPPF---VF-TQGSNGAGCDCVSGCTD--RCFCAVKN 466 (580)
Q Consensus 393 s~r~~g~i~~DIS~G~E~~PI~vvN~vD~e~~P~~F~YI~~~~~~~~---~~-~~~~~~~gC~C~~~C~~--~C~C~~~n 466 (580)
++...|+=..|.++|.+.+|||++|.+|++.+|. -+|........+ +. ..-++..||.|.+.|.+ .|.|.+..
T Consensus 869 tvD~~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~-c~d~~~~~~~~~~~~~s~~~~~~~~~~s~d~hp~d~~~~~~~~~~ 947 (1262)
T KOG1141|consen 869 TVDDKGLDVADFSLGTSGIPIPLVNSVDNDEPPS-CEDSKRRFQYNDQVDISSVSRDFCSGCSCDGHPSDASKCECQQLS 947 (1262)
T ss_pred eccccccchhhhhccccCCCCccccccccCCCcc-ccccceeecccccchhhhhccccccccccCCCCcccCcccCCCCC
Confidence 3444566678999999999999999999876553 233222111111 11 12247889999999986 68887643
Q ss_pred C---CCcc--ccCCCc--ee--------cCCCeeeeCCCCCCCCccccccccccCccccE--------EEEeccCCCcce
Q 008027 467 G---GEFA--YDHNGY--LL--------RGKPVIFECGAFCQCPPTCRNRVSQRGLRNRL--------EVFRSRETGWGV 523 (580)
Q Consensus 467 g---g~~~--Y~~~G~--Lv--------~~~~li~EC~~~C~C~~~C~NRvvQrG~~~~L--------eVFrT~~kGWGV 523 (580)
- +.++ ...+|. ++ ..+-.++||++.|.|...|.||++|.+.+.++ .||+|..-|||+
T Consensus 948 ~~~~~~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~ 1027 (1262)
T KOG1141|consen 948 IEAMKRCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGV 1027 (1262)
T ss_pred hhhhcCCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhhhcCCccceeeeecccccccccccccccc
Confidence 1 1111 122222 11 11335789999999999999999999988765 457788899999
Q ss_pred eecCCCCCCCeEEEeeeeeeCHHHHHH
Q 008027 524 RSLDLIHAGAFICEYAGVVLTMEQAQI 550 (580)
Q Consensus 524 Ra~~~I~kG~FIcEYvGEvIt~~Eae~ 550 (580)
+...+|+.-+|||||+|...++.-+++
T Consensus 1028 ~edtD~~~~~~~~~~~~~ppt~~l~~~ 1054 (1262)
T KOG1141|consen 1028 REDTDIPQSTFICTYVGAPPTDDLADE 1054 (1262)
T ss_pred cccccCCCCcccccccCCCCchhhHHH
Confidence 999999999999999999999987764
No 10
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=98.64 E-value=3.6e-09 Score=121.91 Aligned_cols=80 Identities=33% Similarity=0.492 Sum_probs=66.1
Q ss_pred cccccccc-CccccEEEEeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHHH-----hcCCCeeeeC--CCcccCcc
Q 008027 498 CRNRVSQR-GLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIF-----SMNGDSLIYP--NRFSARWG 569 (580)
Q Consensus 498 C~NRvvQr-G~~~~LeVFrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~~-----d~~gd~ylf~--~~~~~D~~ 569 (580)
|.|+-+|+ +.-.+|+||++..+||||+++++|++|+|||||+||||+.+|++.+ -...++|+.. -+..+|..
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~l~id~~ 1245 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPGLFIDIP 1245 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCccccCChh
Confidence 78877776 5667999999999999999999999999999999999999998754 3345667654 35566888
Q ss_pred cCCCcccc
Q 008027 570 EWGDLSQM 577 (580)
Q Consensus 570 ~kGNlSr~ 577 (580)
+.||..||
T Consensus 1246 R~~n~~Rf 1253 (1306)
T KOG1083|consen 1246 RMGNGARF 1253 (1306)
T ss_pred hccccccc
Confidence 88888877
No 11
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=98.48 E-value=8.7e-08 Score=112.75 Aligned_cols=69 Identities=23% Similarity=0.373 Sum_probs=57.4
Q ss_pred cEEEEeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHHHh----c--CCCeeeeCCCc--ccCcccCCCcccce
Q 008027 510 RLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFS----M--NGDSLIYPNRF--SARWGEWGDLSQMK 578 (580)
Q Consensus 510 ~LeVFrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~~d----~--~gd~ylf~~~~--~~D~~~kGNlSr~~ 578 (580)
+|.--++..+||||+|+++|.+|+||.||+||+|...-|+.|+ . .|++|+|..+. .+||+++||+.||-
T Consensus 867 ~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~I 943 (1005)
T KOG1080|consen 867 YVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFI 943 (1005)
T ss_pred hhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhhee
Confidence 3555567789999999999999999999999999988887542 2 47999998654 46999999999983
No 12
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.27 E-value=1.9e-06 Score=74.36 Aligned_cols=68 Identities=32% Similarity=0.602 Sum_probs=56.7
Q ss_pred cEEEEeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHHH----hcCC--CeeeeCCC--cccCcccCCCcccc
Q 008027 510 RLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIF----SMNG--DSLIYPNR--FSARWGEWGDLSQM 577 (580)
Q Consensus 510 ~LeVFrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~~----d~~g--d~ylf~~~--~~~D~~~kGNlSr~ 577 (580)
+++++++..+||||+|..+|++|++|+||.|+++...++... ...+ ..|+|... +.+|+...||+.||
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~ 76 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARF 76 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHe
Confidence 478899999999999999999999999999999999887653 3344 47888753 56799889999876
No 13
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=96.86 E-value=0.00041 Score=55.00 Aligned_cols=42 Identities=26% Similarity=0.714 Sum_probs=32.5
Q ss_pred CCCcccCC------CCCCCCccccccCCCccccCCCceecCCCeeeeCCCCCCCCccccccccccCc
Q 008027 447 GAGCDCVS------GCTDRCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRVSQRGL 507 (580)
Q Consensus 447 ~~gC~C~~------~C~~~C~C~~~ngg~~~Y~~~G~Lv~~~~li~EC~~~C~C~~~C~NRvvQrG~ 507 (580)
...|+|+. +|+++|.++ .+.+||...|.|+..|.||.+||..
T Consensus 3 ~~~C~C~~~~~~~~~CgsdClNR-------------------~l~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 3 IMTCECKPTDDDEGACGSDCLNR-------------------MLLIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred CceeeCccCCCCCCCcchHHHHH-------------------HHhhhcCCCCCCCcCccCcccccCc
Confidence 45688874 577666543 3579999889999999999999853
No 14
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.55 E-value=0.0028 Score=65.98 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=39.1
Q ss_pred cCccccEEEEeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHHH
Q 008027 505 RGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIF 551 (580)
Q Consensus 505 rG~~~~LeVFrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~~ 551 (580)
+|....|.+-.-..||-||++.....+|+||.||.|.+|...||..+
T Consensus 252 ~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~r 298 (392)
T KOG1085|consen 252 KGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVR 298 (392)
T ss_pred hccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHH
Confidence 45455566655566999999999999999999999999999998754
No 15
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=96.32 E-value=0.0019 Score=71.56 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=70.8
Q ss_pred eeCCCCCCCCccccccccccCccccEEEEeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHHHhcCC----CeeeeC
Q 008027 486 FECGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIFSMNG----DSLIYP 561 (580)
Q Consensus 486 ~EC~~~C~C~~~C~NRvvQrG~~~~LeVFrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~~d~~g----d~ylf~ 561 (580)
.++...+.+...|.|...+........+..+..+||||++++.|++|+||.||.|+++...++..+..+. ..+.|.
T Consensus 309 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (480)
T COG2940 309 DFSKSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFG 388 (480)
T ss_pred ccccccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchh
Confidence 3455555555677777777888888888899999999999999999999999999999999998765433 222221
Q ss_pred ---C-CcccCcccCCCcccce
Q 008027 562 ---N-RFSARWGEWGDLSQMK 578 (580)
Q Consensus 562 ---~-~~~~D~~~kGNlSr~~ 578 (580)
. ....|....||.+|+.
T Consensus 389 ~~~~~~~~~d~~~~g~~~r~~ 409 (480)
T COG2940 389 LLEDKDKVRDSQKAGDVARFI 409 (480)
T ss_pred hccccchhhhhhhccccccee
Confidence 1 3345788888888874
No 16
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=93.79 E-value=0.00061 Score=70.93 Aligned_cols=138 Identities=8% Similarity=-0.161 Sum_probs=110.8
Q ss_pred CccCCceech-HHHHHHhccCCCCCCCcccccCCCCCCCCCcEEEEEEcCCCCCCCCCCCeEEEEcCCCCCCCCccccCC
Q 008027 226 GVQIGDVFFF-RMELLVVGLHGHSQAGIDYLPGSQSANGEPIATSIIVSGGYEDDEDAGDVLIYTGHGGQDKLSRQCEHQ 304 (580)
Q Consensus 226 GV~vGd~F~~-R~el~~~GlH~~~~aGId~~~~~~~~~g~~~A~SIV~SGgY~dD~D~Gd~liYtG~GG~~~~~~q~~DQ 304 (580)
++..+..+-. +.+..-.+.|-|++.++.+ .+-..+.+++.+|+|+++.+.+++..|++-|+......+..-+
T Consensus 10 sf~~~~a~~~i~~~~~~~a~~kp~l~l~v~-------~~~~~~~~~~n~~~~~~e~~~~f~~l~~~~g~~~~~~~~~~p~ 82 (301)
T COG3440 10 SFSQRNASLKIFGGNREAAPHKPILLLDVG-------RKISTFFITENQGIYETELIEPFIQLWSFFGPKLQKYGVDAPF 82 (301)
T ss_pred chhhhhhhhhhcccccccCCcCceeehhhH-------hhhhcccccccccccchhccchHHHHHhhcCcccccCCCCCch
Confidence 5555555544 6667778999999999974 3444578999999999999999999999999963223333335
Q ss_pred ccchhhHHHHHhhhcCCeEEEEeccccCCC-cccceeEecCeEEEEEEEEecCCCceeEEEEeEEee
Q 008027 305 KLEGGNLAMERSMHYGIEVRVIRGFRYQGS-VSSKVYVYDGLYKIHDCWFDVGKSGFGVYKYKLLRI 370 (580)
Q Consensus 305 kle~gNlAL~~S~~~~~PVRVIRg~k~~~~-~p~~gYrYDGLY~V~~~w~e~gk~G~~V~kFkL~R~ 370 (580)
.+..++.++..+++.+.+-+++|++..... .+...+-|-|+|.+...|.+++-.+..++.|...+.
T Consensus 83 ~~l~~d~~~h~~~k~~~~~l~~~~~~~~~e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~~ 149 (301)
T COG3440 83 ELLQGDGKWHLDIKEGFDGLSIRTLPTEKEFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEVL 149 (301)
T ss_pred HHhhccchhhhcccccCCccccCCCccHhhhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 567899999999999999999999987654 378889999999999999999988888888877776
No 17
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=88.18 E-value=0.42 Score=42.52 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=26.7
Q ss_pred CcceeecCCCCCCCeEEEeeeeeeCHHHHHH
Q 008027 520 GWGVRSLDLIHAGAFICEYAGVVLTMEQAQI 550 (580)
Q Consensus 520 GWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~ 550 (580)
|+||+|..+|++|+.|+++.+.+|+..++..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~ 31 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSP 31 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHC
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhh
Confidence 8999999999999999999999999888754
No 18
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=33.47 E-value=14 Score=40.95 Aligned_cols=35 Identities=34% Similarity=1.039 Sum_probs=27.9
Q ss_pred CCCCcccCC-CCCC-CCccccccCCCccccCCCceecCCCeeeeCCCCCCCCccccc
Q 008027 446 NGAGCDCVS-GCTD-RCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRN 500 (580)
Q Consensus 446 ~~~gC~C~~-~C~~-~C~C~~~ngg~~~Y~~~G~Lv~~~~li~EC~~~C~C~~~C~N 500 (580)
...||+|.. +|.. -|.|.+.+ .-|...|.|. .|.|
T Consensus 216 hkkGC~CkkSgClKkYCECyQa~-------------------vlCS~nCkC~-~CkN 252 (406)
T KOG1171|consen 216 HKKGCNCKKSGCLKKYCECYQAG-------------------VLCSSNCKCQ-GCKN 252 (406)
T ss_pred hcCCCCCccccchHHHHHHHhcC-------------------CCccccccCc-CCcc
Confidence 678999986 7986 59997642 4699999994 7888
No 19
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=33.35 E-value=13 Score=41.82 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCCCCCccccccccccCccccEEEEeccCCCcceeecCCCCCCCeEEEeeeeeeCHHHHHHH--------hcCCCeee
Q 008027 488 CGAFCQCPPTCRNRVSQRGLRNRLEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAQIF--------SMNGDSLI 559 (580)
Q Consensus 488 C~~~C~C~~~C~NRvvQrG~~~~LeVFrT~~kGWGVRa~~~I~kG~FIcEYvGEvIt~~Eae~~--------d~~gd~yl 559 (580)
+...|.+...|.|+-..+..... ..+ .+..+|.+| +||+|++.|...+ ...--.++
T Consensus 293 ~p~~~~~~~~~~~~~~sk~~~~e------~~~----~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~ 356 (463)
T KOG1081|consen 293 HPKVCSAEERCHNQQFSKESYPE------PQK----TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVF 356 (463)
T ss_pred cccccccccccccchhhhhcccc------cch----hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhh
Q ss_pred eCCCcccCcccCCCcccc
Q 008027 560 YPNRFSARWGEWGDLSQM 577 (580)
Q Consensus 560 f~~~~~~D~~~kGNlSr~ 577 (580)
+..+..+|+.++||+||+
T Consensus 357 ~e~~~~id~~~~~n~sr~ 374 (463)
T KOG1081|consen 357 IQKDRIIDAGPKGNYSRF 374 (463)
T ss_pred hhcccccccccccchhhh
No 20
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=30.65 E-value=28 Score=26.85 Aligned_cols=36 Identities=33% Similarity=0.880 Sum_probs=27.4
Q ss_pred CCCcccC-CCCCC-CCccccccCCCccccCCCceecCCCeeeeCCCCCCCCccccccc
Q 008027 447 GAGCDCV-SGCTD-RCFCAVKNGGEFAYDHNGYLLRGKPVIFECGAFCQCPPTCRNRV 502 (580)
Q Consensus 447 ~~gC~C~-~~C~~-~C~C~~~ngg~~~Y~~~G~Lv~~~~li~EC~~~C~C~~~C~NRv 502 (580)
..||.|. ..|.- -|.|.... ..|++.|.| ..|.|..
T Consensus 3 ~~gC~Ckks~Clk~YC~Cf~~g-------------------~~C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 3 KKGCNCKKSKCLKLYCECFQAG-------------------RFCTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCCcccCcChhhhhCHHHHCc-------------------CcCCCCccc-CCCCCcC
Confidence 4689996 46885 59997641 489999999 6888864
No 21
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=29.58 E-value=2.5e+02 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=26.7
Q ss_pred ccccceeccCCCchhhHHHHHHHHHHHHHHHHH
Q 008027 145 RSGELVRVTDLSAEDERYFRDVVRRTRMLYDSL 177 (580)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~l 177 (580)
+.=++.-.+-++.++...+.-+++++.-+|+.|
T Consensus 58 k~C~v~V~N~C~sna~~sf~lll~Al~Et~~~L 90 (226)
T PHA02662 58 RNCELVVLNRCHTDAADALALASAALAETLAEL 90 (226)
T ss_pred CCceEEEEecccCCHHHHHHHHHHHHHHHHHhC
Confidence 344666667788899999999999999999876
No 22
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=27.96 E-value=1.6e+02 Score=23.63 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=27.7
Q ss_pred ccceeEecC-eEEEEEEEEecCCCceeEEEEeEEeec
Q 008027 336 SSKVYVYDG-LYKIHDCWFDVGKSGFGVYKYKLLRIE 371 (580)
Q Consensus 336 p~~gYrYDG-LY~V~~~w~e~gk~G~~V~kFkL~R~~ 371 (580)
++..+.||| +|.|.++-.-+...|-..+|.+|+-+.
T Consensus 7 ~G~~i~~~g~~~~V~~~~~~k~gkg~a~v~~klknl~ 43 (58)
T PF08207_consen 7 KGMVIEIDGEPYVVLDFQHVKPGKGGAFVRVKLKNLR 43 (58)
T ss_dssp TTSEEEETTEEEEEEEEEEECCTTSSSEEEEEEEETT
T ss_pred CCCEEEECCEEEEEEEEEEECCCCCCeEEEEEEEECC
Confidence 456677876 899999977776667778888888764
No 23
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=26.80 E-value=34 Score=39.10 Aligned_cols=19 Identities=32% Similarity=0.994 Sum_probs=16.0
Q ss_pred CCCCcccCCCCCC-CCcccc
Q 008027 446 NGAGCDCVSGCTD-RCFCAV 464 (580)
Q Consensus 446 ~~~gC~C~~~C~~-~C~C~~ 464 (580)
.-.||+|..-|.+ .|+|.+
T Consensus 306 eeCGCsCr~~CdPETCaCSq 325 (640)
T KOG3813|consen 306 EECGCSCRGVCDPETCACSQ 325 (640)
T ss_pred HhhCCcccceeChhhcchhc
Confidence 4579999999997 699976
No 24
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=26.28 E-value=98 Score=29.01 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=30.6
Q ss_pred ccceeEecC-eEEEEEEE-EecCCCceeEEEEeEEeecCCCC
Q 008027 336 SSKVYVYDG-LYKIHDCW-FDVGKSGFGVYKYKLLRIEGQPE 375 (580)
Q Consensus 336 p~~gYrYDG-LY~V~~~w-~e~gk~G~~V~kFkL~R~~gQp~ 375 (580)
++..+.||| +|+|+++- .-+|+.|....+.+|+.+..-..
T Consensus 13 kG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~ 54 (129)
T PRK03999 13 EGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQK 54 (129)
T ss_pred CCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCE
Confidence 567789999 99999964 45566687888999998865433
No 25
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.57 E-value=1.9e+02 Score=35.18 Aligned_cols=7 Identities=29% Similarity=0.235 Sum_probs=4.4
Q ss_pred CceeecC
Q 008027 120 RAIVTVT 126 (580)
Q Consensus 120 ~~~~~~~ 126 (580)
++|||..
T Consensus 632 ~kI~p~d 638 (1102)
T KOG1924|consen 632 SKIVPRD 638 (1102)
T ss_pred cccCccc
Confidence 6677743
No 26
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=21.48 E-value=1.1e+02 Score=35.18 Aligned_cols=56 Identities=34% Similarity=0.545 Sum_probs=32.0
Q ss_pred CCCeeee--CCCCCC-CCcccccc-ccccCccccEE---EEeccCCCcceeecCCCCCCCeEEE
Q 008027 481 GKPVIFE--CGAFCQ-CPPTCRNR-VSQRGLRNRLE---VFRSRETGWGVRSLDLIHAGAFICE 537 (580)
Q Consensus 481 ~~~li~E--C~~~C~-C~~~C~NR-vvQrG~~~~Le---VFrT~~kGWGVRa~~~I~kG~FIcE 537 (580)
.+|+|.| |.- |+ |-..|+=- ..--++.-.|+ +-|-+.-||-|+.+-..+.|..+.-
T Consensus 43 gkpvIsE~lCiG-CGICvkkCPF~AI~IvnLP~eLe~e~vHRYg~NgFkL~~LP~pr~G~V~Gi 105 (591)
T COG1245 43 GKPVISEELCIG-CGICVKKCPFDAISIVNLPEELEEEVVHRYGVNGFKLYRLPTPRPGKVVGI 105 (591)
T ss_pred CCceeEhhhhcc-chhhhccCCcceEEEecCchhhcccceeeccCCceEEecCCCCCCCcEEEE
Confidence 3688888 543 65 66777632 22223333333 4444556777777766666766543
No 27
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=20.19 E-value=36 Score=28.60 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=11.5
Q ss_pred cCCCceeEEEEeEEeecCCCC
Q 008027 355 VGKSGFGVYKYKLLRIEGQPE 375 (580)
Q Consensus 355 ~gk~G~~V~kFkL~R~~gQp~ 375 (580)
...+-|.=-+|-.+|++|||-
T Consensus 39 Pd~srf~N~rF~~eri~gqpl 59 (67)
T PF12218_consen 39 PDISRFKNARFVYERIPGQPL 59 (67)
T ss_dssp --GGGEES-EEEE-SSTT--E
T ss_pred ccHHhhccceEEEeecCCCce
Confidence 345556656888899999995
Done!