BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008028
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/527 (62%), Positives = 382/527 (72%), Gaps = 31/527 (5%)
Query: 85 MNLVFVGAEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMSVAPRYDQYKDAWDTSVLAEVK 144
MN+VFVGAE+APWSKT HRVM ++PRYDQYKDAWDTSV+AE+K
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 145 VGDSIETVRFFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLC 204
V D E VRFFHCYKRGVDRVF+DHP FLEKVWGKTG KIYGP G+DY+DNQ+RFSLLC
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 205 QAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPCYLKFMYQSKGIHKNAK-RLC 263
QAALEAPRILNLNNN YF G YGEDV+F+ NDWHT L YLK YQ GI++NAK C
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 264 ----------------------RPR--------YDKPVKGRKINWMKAGILESDRVLTVS 293
R R YD PV+GRKINWMKAGILE+DRVLTVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 294 PHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKP 353
P+YA+ELISG +G ELDNI+R TGI+GIVNGMDV EW+PS D+YI YDATT + AK
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKA 309
Query: 354 LVKEALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPM 413
L KEALQ++ GLPVDR IPLI FIGRLEEQKG D++A AIP+ M +VQIV+LGTGKK
Sbjct: 310 LNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKF 369
Query: 414 EQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPI 473
E+ ++ +E P K R + KF+ PLAH I+AGAD + VPSRFEPCGLIQL MRYGT
Sbjct: 370 EKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCA 429
Query: 474 VASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQN 533
ASTGGL DTV EG TGF M V+C V+ +DV +A + RA+ GTPA +EM++N
Sbjct: 430 CASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRN 489
Query: 534 CMALDLSWKEPARLWEKMLLSMEVAGSEPGIEGDEIAPLARENLATP 580
CM DLSWK PA+ WE +LL + VAGS PGIEGDEIAPLA+EN+A P
Sbjct: 490 CMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 536
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/441 (28%), Positives = 201/441 (45%), Gaps = 64/441 (14%)
Query: 151 TVRFFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEA 210
T+ F H GV +D P ++ + GS Y Y DN LRF+LL E
Sbjct: 68 TLLFGHY--NGVGIYLIDAP----HLYDRPGSP-YHDTNLFAYTDNVLRFALLGWVGAEM 120
Query: 211 PRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPCYL--------------KFMYQSKGIH 256
L+ P+ + +DWH L P YL YQ
Sbjct: 121 ASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYA 171
Query: 257 KNAKRLCRPRYDKPVKGRKIN----WMKAGILESDRVLTVSPHYAKELISGE-EKGVE-- 309
+ + P + G + N ++KAG+ +D + VSP YA+E+ + G+E
Sbjct: 172 HHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGL 231
Query: 310 LDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDR 369
L R+ +SG++NG+D + W+P TD + Y T+ + K K LQ +GL VD
Sbjct: 232 LQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED-KAENKRQLQIAMGLKVDD 290
Query: 370 NIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKAR 429
+PL + RL QKG D++ +A+P + Q+ +LG G +++ P +
Sbjct: 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVG 350
Query: 430 GITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGIT 489
+ +H+I+ GAD +LVPSRFEPCGL QL+ ++YGT+P+V TGGL DTV
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVS---- 406
Query: 490 GFQMRSFHVECDRVDLADVAA------------IAKHVNRAVATYGTPALKEMIQ-NCMA 536
+C +LAD A + + + RA + P+L +Q MA
Sbjct: 407 ---------DCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA 457
Query: 537 LDLSWKEPARLWEKMLLSMEV 557
+D SW+ A+ + ++ +++
Sbjct: 458 MDFSWQVAAKSYRELYYRLKL 478
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 172 bits (435), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 203/429 (47%), Gaps = 42/429 (9%)
Query: 151 TVRFFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEA 210
T+ F H GV +D P ++ + GS Y Y DN LRF+LL E
Sbjct: 68 TLLFGHY--NGVGIYLIDAP----HLYDRPGSP-YHDTNLFAYTDNVLRFALLGWVGAEM 120
Query: 211 PRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPCYL--------------KFMYQSKGIH 256
L+ P+ + +DWH L P YL YQ
Sbjct: 121 ASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYA 171
Query: 257 KNAKRLCRPRYDKPVKGRKIN----WMKAGILESDRVLTVSPHYAKELISGE-EKGVE-- 309
+ + P + G + N ++KAG+ +D + VSP YA+E+ + G+E
Sbjct: 172 HHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGL 231
Query: 310 LDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDR 369
L R+ +SG++NG+D + W+P TD + Y T+ + K K LQ +GL VD
Sbjct: 232 LQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED-KAENKRQLQIAMGLKVDD 290
Query: 370 NIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKAR 429
+PL + RL QKG D++ +A+P + Q+ +LG G +++ P +
Sbjct: 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVG 350
Query: 430 GITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGIT 489
+ +H+I+ GAD +LVPSRFEPCGL QL+ ++YGT+P+V TGGL DTV + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD--S 408
Query: 490 GFQMRSFHVECDRV-DLADVAAIAKHVNRAVATYGTPALKEMIQ-NCMALDLSWKEPARL 547
+ + V V + ++ ++ + + RA + P+L +Q MA+D SW+ A+
Sbjct: 409 SLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKS 468
Query: 548 WEKMLLSME 556
+ ++ ++
Sbjct: 469 YRELYYRLK 477
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 200/441 (45%), Gaps = 64/441 (14%)
Query: 151 TVRFFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEA 210
T+ F H GV +D P ++ + GS Y Y DN LRF+LL E
Sbjct: 68 TLLFGHY--NGVGIYLIDAP----HLYDRPGSP-YHDTNLFAYTDNVLRFALLGWVGAEM 120
Query: 211 PRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPCYL--------------KFMYQSKGIH 256
L+ P+ + +DWH L P YL YQ
Sbjct: 121 ASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYA 171
Query: 257 KNAKRLCRPRYDKPVKGRKIN----WMKAGILESDRVLTVSPHYAKELISGE-EKGVE-- 309
+ + P + G + N ++KAG+ +D + VSP YA+E+ + G+E
Sbjct: 172 HHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGL 231
Query: 310 LDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDR 369
L R+ +SG++NG+D + W+P TD + Y T+ + K K LQ +GL VD
Sbjct: 232 LQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED-KAENKRQLQIAMGLKVDD 290
Query: 370 NIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKAR 429
+PL + RL QKG D++ +A+P + Q+ +LG G +++ P +
Sbjct: 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVG 350
Query: 430 GITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGIT 489
+ +H+I+ GAD +LVPSRF PCGL QL+ ++YGT+P+V TGGL DTV
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTLPLVRRTGGLADTVS---- 406
Query: 490 GFQMRSFHVECDRVDLADVAA------------IAKHVNRAVATYGTPALKEMIQ-NCMA 536
+C +LAD A + + + RA + P+L +Q MA
Sbjct: 407 ---------DCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA 457
Query: 537 LDLSWKEPARLWEKMLLSMEV 557
+D SW+ A+ + ++ +++
Sbjct: 458 MDFSWQVAAKSYRELYYRLKL 478
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 226/498 (45%), Gaps = 58/498 (11%)
Query: 85 MNLVFVGAEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMSVAPRYDQYKDAWDTSVLAEVK 144
MN++ V +E+ P KT R ++ P Y K A V
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60
Query: 145 VGDSIETVRFFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLC 204
E +D + +D P + E+ G Y + G DY DN RF+ L
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL- 114
Query: 205 QAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPCYLKFMYQSK-----GIHKNA 259
+L A RI G + D++ +DW A+ P Y+++ + IH A
Sbjct: 115 --SLAAARI----GAGVLPG-WRPDMVH-AHDWQAAMTPVYMRYAETPEIPSLLTIHNIA 166
Query: 260 ----------KRLCRPRYDKPVKG----RKINWMKAGILESDRVLTVSPHYAKELISGEE 305
+L P + ++G ++++K G+ + + TVSP YA+E+++ E
Sbjct: 167 FQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAE- 225
Query: 306 KGVELDNII--RKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQL 363
G+ L+ +I R + GIVNG+D WNP+TD I+ NY A + N + L K+A+
Sbjct: 226 FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN-RALNKKAVAEHF 284
Query: 364 GLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEII 423
+ D PL I RL QKG D++A+A+ + + ++VVLG G +E +
Sbjct: 285 RID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASR 343
Query: 424 CPEKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDT 483
+ ++ PL+H + AG D +++PSRFEPCGL QL+A+RYG +P+VA TGGL DT
Sbjct: 344 HHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADT 403
Query: 484 V---------KEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNC 534
V + TG Q ++ + + + R V Y P L +Q
Sbjct: 404 VIDANHAALASKAATGVQFSPVTLD----------GLKQAIRRTVRYYHDPKLWTQMQKL 453
Query: 535 -MALDLSWKEPARLWEKM 551
M D+SW++ A L+ +
Sbjct: 454 GMKSDVSWEKSAGLYAAL 471
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 196/428 (45%), Gaps = 72/428 (16%)
Query: 162 VDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKY 221
+D + +D P + E+ G Y + G DY DN RF+ L +L A RI
Sbjct: 78 LDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL---SLAAARI-------- 121
Query: 222 FSGPYGEDVL-------FIGNDWHTALLPCYLKFMYQSK-----GIHKNA---------- 259
G VL +DW A P Y ++ + IH A
Sbjct: 122 -----GAGVLPGWRPDXVHAHDWQAAXTPVYXRYAETPEIPSLLTIHNIAFQGQFGANIF 176
Query: 260 KRLCRPRYDKPVKG----RKINWMKAGILESDRVLTVSPHYAKELISGEEKGVELDNII- 314
+L P + +G ++++K G+ + + TVSP YA+E+++ E G L+ +I
Sbjct: 177 SKLALPAHAFGXEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAE-FGXGLEGVIG 235
Query: 315 -RKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPL 373
R + GIVNG+D WNP+TD I+ NY A + N + L K+A+ + D PL
Sbjct: 236 SRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN-RALNKKAVAEHFRID-DDGSPL 293
Query: 374 IGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITK 433
I RL QKG D+ A+A+ + + ++VVLG G +E + +
Sbjct: 294 FCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIG 353
Query: 434 FSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTV--------- 484
++ PL+H AG D +++PSRFEPCGL QL+A+RYG +P+VA TGGL DTV
Sbjct: 354 YNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALA 413
Query: 485 KEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNC-MALDLSWKE 543
+ TG Q ++ + + + R V Y P L Q D+SW++
Sbjct: 414 SKAATGVQFSPVTLD----------GLKQAIRRTVRYYHDPKLWTQXQKLGXKSDVSWEK 463
Query: 544 PARLWEKM 551
A L+ +
Sbjct: 464 SAGLYAAL 471
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 57/335 (17%)
Query: 235 NDWHTALLPCYLKFMYQSKGIHKNAKRLCRPRYDKPVKGRKINWMKAGILESDRVLTVSP 294
+DWHT +K ++ + RL + + + +AG+ E + P
Sbjct: 130 HDWHTVFAGALIKKYFKIPAVF-TIHRLNKSKLPA------FYFHEAGLSELAPYPDIDP 182
Query: 295 H----YAKELISGEEKGVELDN--IIR--KTGISGIVNGMDVQEWNPSTDRYINVNYDAT 346
Y ++++ +G +D R + I+ + NG+D WN S Y+ + D
Sbjct: 183 EHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNES---YLTGSRDER 239
Query: 347 TVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEE-QKGSDILAQAI----PKFMGGNV 401
K++L S+ G+ D + + FIGR + QKG D+L +AI K +
Sbjct: 240 ---------KKSLLSKFGM--DEGVTFM-FIGRFDRGQKGVDVLLKAIEILSSKKEFQEM 287
Query: 402 QIVVLGTGKKPMEQQIEQLEIICPEK---ARGITK-FSTPLAHKIIAGADFMLVPSRFEP 457
+ +++G G +E LE EK + IT+ S ++ DF+++PS FEP
Sbjct: 288 RFIIIGKGDPELEGWARSLE----EKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEP 343
Query: 458 CGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNR 517
GL+ L AM G +PI ++ GGL D + TG +++ D +LA+ A ++R
Sbjct: 344 FGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKA----GDPGELANAILKALELSR 398
Query: 518 AVATYGTPALKEMIQNC--MALDLSWKEPARLWEK 550
+ L + +NC A+ SW++ A + K
Sbjct: 399 S-------DLSKFRENCKKRAMSFSWEKSAERYVK 426
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 57/335 (17%)
Query: 235 NDWHTALLPCYLKFMYQSKGIHKNAKRLCRPRYDKPVKGRKINWMKAGILESDRVLTVSP 294
+DWHT +K ++ + RL + + + +AG+ E + P
Sbjct: 129 HDWHTVFAGALIKKYFKIPAVF-TIHRLNKSKLPA------FYFHEAGLSELAPYPDIDP 181
Query: 295 H----YAKELISGEEKGVELDN--IIR--KTGISGIVNGMDVQEWNPSTDRYINVNYDAT 346
Y ++++ +G +D R + I+ + NG+D WN S Y+ + D
Sbjct: 182 EHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNES---YLTGSRDER 238
Query: 347 TVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEE-QKGSDILAQAI----PKFMGGNV 401
K++L S+ G+ D + + FIGR + QKG D+L +AI K +
Sbjct: 239 ---------KKSLLSKFGM--DEGVTFM-FIGRFDRGQKGVDVLLKAIEILSSKKEFQEM 286
Query: 402 QIVVLGTGKKPMEQQIEQLEIICPEK---ARGITK-FSTPLAHKIIAGADFMLVPSRFEP 457
+ +++G G +E LE EK + IT+ S ++ DF+++PS FEP
Sbjct: 287 RFIIIGKGDPELEGWARSLE----EKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEP 342
Query: 458 CGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNR 517
GL+ L AM G +PI ++ GGL D + TG +++ D +LA+ A ++R
Sbjct: 343 FGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKA----GDPGELANAILKALELSR 397
Query: 518 AVATYGTPALKEMIQNC--MALDLSWKEPARLWEK 550
+ L + +NC A+ SW++ A + K
Sbjct: 398 S-------DLSKFRENCKKRAMSFSWEKSAERYVK 425
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 57/335 (17%)
Query: 235 NDWHTALLPCYLKFMYQSKGIHKNAKRLCRPRYDKPVKGRKINWMKAGILESDRVLTVSP 294
+DWHT +K ++ + RL + + + +AG+ E + P
Sbjct: 129 HDWHTVFAGALIKKYFKIPAVF-TIHRLNKSKLPA------FYFHEAGLSELAPYPDIDP 181
Query: 295 H----YAKELISGEEKGVELDN--IIR--KTGISGIVNGMDVQEWNPSTDRYINVNYDAT 346
Y ++++ +G +D R + I+ + NG+D WN S Y+ + D
Sbjct: 182 EHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNES---YLTGSRDER 238
Query: 347 TVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEE-QKGSDILAQAI----PKFMGGNV 401
K++L S+ G+ D + + FIGR + QKG D+L +AI K +
Sbjct: 239 ---------KKSLLSKFGM--DEGVTFM-FIGRFDRGQKGVDVLLKAIEILSSKKEFQEM 286
Query: 402 QIVVLGTGKKPMEQQIEQLEIICPEK---ARGITK-FSTPLAHKIIAGADFMLVPSRFEP 457
+ +++G G +E LE EK + IT+ S ++ DF+++PS FEP
Sbjct: 287 RFIIIGKGDPELEGWARSLE----EKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEP 342
Query: 458 CGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNR 517
GL+ L AM G +PI ++ GGL D + TG +++ D +LA+ A ++R
Sbjct: 343 FGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKA----GDPGELANAILKALELSR 397
Query: 518 AVATYGTPALKEMIQNC--MALDLSWKEPARLWEK 550
+ L + +NC A+ SW++ A + K
Sbjct: 398 S-------DLSKFRENCKKRAMSFSWEKSAERYVK 425
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 28/170 (16%)
Query: 324 NGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEE- 382
NG+D WN S Y+ + D K++L S+ G+ D + + FIGR +
Sbjct: 4 NGIDCSFWNES---YLTGSRDER---------KKSLLSKFGM--DEGVTFM-FIGRFDRG 48
Query: 383 QKGSDILAQAI----PKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEK---ARGITK-F 434
QKG D+L +AI K ++ +++G G +E LE EK + IT+
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLE----EKHGNVKVITEML 104
Query: 435 STPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTV 484
S ++ DF+++PS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 105 SREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 154
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 49/192 (25%)
Query: 319 ISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIG 378
IS + G DV+ ++P DR E + +LG+P+ + + F+G
Sbjct: 190 ISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPLHTKV--VAFVG 230
Query: 379 RLEEQKGSDILAQAIPKFMGG----NVQIVVLGTGKKP---------------MEQQIEQ 419
RL+ KG +L +A+ N+++++ G P +E++I
Sbjct: 231 RLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 290
Query: 420 LEIICPEKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG 479
L+ P + + + AD + VPS E GL+ + A GT I A GG
Sbjct: 291 LDPRPPSELVAVYR-----------AADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG 339
Query: 480 LFDTVKEGITGF 491
L V EG TG
Sbjct: 340 LPIAVAEGETGL 351
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 49/192 (25%)
Query: 319 ISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIG 378
IS + G DV+ ++P DR E + +LG+P+ + + F+G
Sbjct: 210 ISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPLHTKV--VAFVG 250
Query: 379 RLEEQKGSDILAQAIPKFMGG----NVQIVVLGTGKKP---------------MEQQIEQ 419
RL+ KG +L +A+ N+++++ G P +E++I
Sbjct: 251 RLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 310
Query: 420 LEIICPEKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG 479
L+ P + + + AD + VPS E GL+ + A GT I A GG
Sbjct: 311 LDPRPPSELVAVYR-----------AADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG 359
Query: 480 LFDTVKEGITGF 491
L V EG TG
Sbjct: 360 LPIAVAEGETGL 371
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 324 NGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQ 383
+G+DV+ + P+T P K A + +LG P+I RL +
Sbjct: 170 SGVDVKRFTPAT-----------------PEDKSATRKKLGF--TDTTPVIACNSRLVPR 210
Query: 384 KGSDILAQAIPKFMGG--NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHK 441
KG D L +A+P+ + + Q++++G+G+ E + +L + + + +
Sbjct: 211 KGQDSLIKAMPQVIAARPDAQLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMIN 268
Query: 442 IIAGADFMLVPSR-------FEPCGLIQLHAMRYGTVPIVASTGG 479
+A AD +P+R E G++ L A G VP++A T G
Sbjct: 269 TLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACG-VPVIAGTSG 312
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 324 NGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQ 383
+G+DV+ + P+T P K A + +LG P+I RL +
Sbjct: 170 SGVDVKRFTPAT-----------------PEDKSATRKKLGF--TDTTPVIACNSRLVPR 210
Query: 384 KGSDILAQAIPKFMGG--NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHK 441
KG D L +A+P+ + + Q++++G+G+ E + +L + + + +
Sbjct: 211 KGQDSLIKAMPQVIAARPDAQLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMIN 268
Query: 442 IIAGADFMLVPSR-------FEPCGLIQLHAMRYGTVPIVASTGG 479
+A AD +P+R E G++ L A G VP++A T G
Sbjct: 269 TLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACG-VPVIAGTSG 312
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 441 KIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGF 491
+++A +D ML+ S E GL+ L AM G I GG+ + ++ G TG+
Sbjct: 280 ELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 330
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 441 KIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGF 491
+++A +D ML+ S E GL+ L AM G I GG+ + ++ G TG+
Sbjct: 300 ELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 350
>pdb|2F2L|X Chain X, Crystal Structure Of Tracheal Cytotoxin (Tct) Bound To The
Ectodomain Complex Of Peptidoglycan Recognition Proteins
Lca (Pgrp-Lca) And Lcx (Pgrp-Lcx)
Length = 167
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 373 LIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLG--TGKKPMEQQIEQLEIICPEKARG 430
L+G GR+ E +G D + + G++ I +G T +KP E+Q+E +++ E R
Sbjct: 69 LVGGDGRVYEGRGWDYVGAHTKGYNRGSIGISFIGTFTTRKPNERQLEACQLLLQEGVR- 127
Query: 431 ITKFST 436
+ K +T
Sbjct: 128 LKKLTT 133
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 132 KDAWDTSVLAEVKVGDSIETVRFFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKA 189
K A +++V E ++G S+ + F C+ +G D V L+ TG K GP A
Sbjct: 19 KSAVNSAVAKEARMGASLLRLHFHDCFVQGCDA-----SVLLDDTSNFTGEKTAGPNA 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,844,653
Number of Sequences: 62578
Number of extensions: 713542
Number of successful extensions: 1600
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 26
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)