Query 008028
Match_columns 580
No_of_seqs 261 out of 2846
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 16:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 6.5E-77 2.2E-81 654.2 48.0 499 82-580 7-536 (536)
2 2qzs_A Glycogen synthase; glyc 100.0 1.6E-45 5.5E-50 400.5 40.6 438 85-558 1-479 (485)
3 1rzu_A Glycogen synthase 1; gl 100.0 2E-45 6.7E-50 399.9 37.3 442 85-560 1-480 (485)
4 3fro_A GLGA glycogen synthase; 100.0 1E-43 3.4E-48 379.5 42.0 408 83-558 1-433 (439)
5 3c48_A Predicted glycosyltrans 100.0 4.5E-38 1.5E-42 336.9 36.5 392 75-563 11-433 (438)
6 2r60_A Glycosyl transferase, g 100.0 9.4E-38 3.2E-42 340.8 30.5 391 84-562 7-466 (499)
7 3okp_A GDP-mannose-dependent a 100.0 4.8E-37 1.7E-41 323.3 32.3 366 83-561 3-385 (394)
8 2c4m_A Glycogen phosphorylase; 100.0 4.5E-37 1.5E-41 339.2 26.5 440 100-557 113-721 (796)
9 2jjm_A Glycosyl transferase, g 100.0 8.8E-36 3E-40 314.9 34.2 374 75-558 3-388 (394)
10 1l5w_A Maltodextrin phosphoryl 100.0 6.7E-37 2.3E-41 337.9 26.1 441 100-557 112-732 (796)
11 3s28_A Sucrose synthase 1; gly 100.0 2.7E-35 9.1E-40 334.3 27.9 410 85-556 279-770 (816)
12 2iw1_A Lipopolysaccharide core 100.0 6.7E-36 2.3E-40 312.5 20.9 358 85-556 1-372 (374)
13 3oy2_A Glycosyltransferase B73 100.0 3.9E-35 1.3E-39 311.8 26.8 356 85-559 1-394 (413)
14 2x6q_A Trehalose-synthase TRET 100.0 7E-35 2.4E-39 310.3 27.7 362 82-556 38-415 (416)
15 2gj4_A Glycogen phosphorylase, 100.0 1.8E-34 6.1E-39 319.6 27.0 436 100-557 122-756 (824)
16 2gek_A Phosphatidylinositol ma 100.0 3E-34 1E-38 303.4 27.1 362 82-560 18-388 (406)
17 2iuy_A Avigt4, glycosyltransfe 100.0 2E-34 6.9E-39 298.6 25.2 315 82-558 1-338 (342)
18 3nb0_A Glycogen [starch] synth 100.0 3.1E-32 1.1E-36 296.5 23.9 417 90-558 33-636 (725)
19 2x0d_A WSAF; GT4 family, trans 100.0 9.4E-31 3.2E-35 278.8 14.4 356 82-557 44-411 (413)
20 2hy7_A Glucuronosyltransferase 99.9 1.3E-27 4.3E-32 254.2 17.8 203 277-558 170-382 (406)
21 1f0k_A MURG, UDP-N-acetylgluco 99.9 2.6E-26 8.7E-31 239.4 21.9 338 84-556 6-358 (364)
22 1uqt_A Alpha, alpha-trehalose- 99.9 8.1E-25 2.8E-29 236.5 28.3 289 228-555 124-454 (482)
23 3beo_A UDP-N-acetylglucosamine 99.9 7.1E-25 2.4E-29 229.2 22.7 224 278-553 142-374 (375)
24 2vsy_A XCC0866; transferase, g 99.9 4.6E-25 1.6E-29 244.2 21.6 215 285-563 328-567 (568)
25 2bfw_A GLGA glycogen synthase; 99.9 1.3E-24 4.3E-29 207.2 20.2 183 321-534 1-192 (200)
26 1ygp_A Yeast glycogen phosphor 99.9 2.3E-23 7.9E-28 229.1 30.1 366 183-552 314-872 (879)
27 1vgv_A UDP-N-acetylglucosamine 99.9 1.3E-24 4.4E-29 228.1 19.6 279 227-556 86-377 (384)
28 3t5t_A Putative glycosyltransf 99.9 8E-24 2.7E-28 226.8 23.4 286 229-557 151-475 (496)
29 3qhp_A Type 1 capsular polysac 99.9 4E-23 1.4E-27 190.8 16.9 159 372-547 3-166 (166)
30 1v4v_A UDP-N-acetylglucosamine 99.9 7.2E-20 2.5E-24 191.6 27.6 219 282-557 143-366 (376)
31 2f9f_A First mannosyl transfer 99.8 2.8E-20 9.6E-25 174.1 16.7 140 369-521 21-162 (177)
32 2xci_A KDO-transferase, 3-deox 99.8 4.2E-18 1.4E-22 178.7 22.0 186 278-521 146-346 (374)
33 3ot5_A UDP-N-acetylglucosamine 99.7 1.4E-15 4.7E-20 161.1 24.2 226 279-557 162-393 (403)
34 3dzc_A UDP-N-acetylglucosamine 99.7 6.2E-16 2.1E-20 163.5 20.7 229 278-552 158-394 (396)
35 3otg_A CALG1; calicheamicin, T 99.7 7.4E-16 2.5E-20 162.9 19.4 159 371-554 243-409 (412)
36 3rhz_A GTF3, nucleotide sugar 99.7 9.3E-16 3.2E-20 158.2 17.2 241 227-548 74-329 (339)
37 3s2u_A UDP-N-acetylglucosamine 99.6 4E-13 1.4E-17 140.3 24.5 159 373-552 183-355 (365)
38 2iyf_A OLED, oleandomycin glyc 99.5 3.6E-13 1.2E-17 143.3 16.1 160 370-555 232-401 (430)
39 4fzr_A SSFS6; structural genom 99.5 1.1E-13 3.8E-18 145.8 12.0 152 370-549 227-396 (398)
40 3oti_A CALG3; calicheamicin, T 99.4 7.6E-12 2.6E-16 131.7 16.4 153 371-552 233-396 (398)
41 3tsa_A SPNG, NDP-rhamnosyltran 99.4 6.8E-13 2.3E-17 139.2 8.3 156 372-552 220-387 (391)
42 4hwg_A UDP-N-acetylglucosamine 99.4 5.6E-12 1.9E-16 132.4 14.6 195 279-521 139-342 (385)
43 3ia7_A CALG4; glycosysltransfe 99.3 7.8E-11 2.7E-15 123.6 18.3 157 370-554 231-399 (402)
44 2p6p_A Glycosyl transferase; X 99.2 8E-10 2.7E-14 115.5 21.9 153 371-552 211-378 (384)
45 3rsc_A CALG2; TDP, enediyne, s 99.2 2.4E-10 8.1E-15 120.7 15.6 156 370-553 247-413 (415)
46 4amg_A Snogd; transferase, pol 98.8 4E-08 1.4E-12 102.8 15.0 152 372-550 239-397 (400)
47 3q3e_A HMW1C-like glycosyltran 98.8 4.2E-08 1.4E-12 106.9 14.2 175 362-556 432-624 (631)
48 2o6l_A UDP-glucuronosyltransfe 98.7 8.8E-08 3E-12 88.0 10.2 122 371-521 22-154 (170)
49 3h4t_A Glycosyltransferase GTF 98.6 3.8E-07 1.3E-11 96.0 16.1 123 371-520 222-351 (404)
50 2yjn_A ERYCIII, glycosyltransf 98.4 6.3E-07 2.2E-11 95.4 10.1 153 372-552 269-434 (441)
51 2iya_A OLEI, oleandomycin glyc 98.0 6.7E-05 2.3E-09 79.0 14.5 157 370-552 255-420 (424)
52 1iir_A Glycosyltransferase GTF 98.0 3.1E-05 1E-09 81.5 11.2 155 371-558 239-401 (415)
53 4gyw_A UDP-N-acetylglucosamine 97.7 0.00092 3.1E-08 75.5 18.6 178 360-557 514-707 (723)
54 1rrv_A Glycosyltransferase GTF 97.6 0.00023 7.9E-09 74.7 11.2 155 371-557 238-401 (416)
55 1psw_A ADP-heptose LPS heptosy 95.7 0.052 1.8E-06 54.9 11.0 113 356-476 167-287 (348)
56 3hbm_A UDP-sugar hydrolase; PS 94.7 0.15 5E-06 50.4 10.2 93 372-476 159-251 (282)
57 3l7i_A Teichoic acid biosynthe 93.4 0.58 2E-05 52.6 13.3 230 283-556 476-718 (729)
58 3hbf_A Flavonoid 3-O-glucosylt 92.8 0.71 2.4E-05 48.7 12.1 133 372-521 275-414 (454)
59 2c1x_A UDP-glucose flavonoid 3 92.5 0.41 1.4E-05 50.6 9.8 129 372-521 273-412 (456)
60 2pq6_A UDP-glucuronosyl/UDP-gl 91.7 1.3 4.3E-05 47.1 12.5 132 372-521 297-439 (482)
61 3tov_A Glycosyl transferase fa 91.1 1.3 4.5E-05 44.8 11.5 109 360-477 176-288 (349)
62 2vch_A Hydroquinone glucosyltr 87.5 4.7 0.00016 42.6 12.9 73 441-520 351-428 (480)
63 2gt1_A Lipopolysaccharide hept 86.7 3.7 0.00013 40.6 11.0 139 372-521 180-322 (326)
64 2jzc_A UDP-N-acetylglucosamine 84.3 1.2 4.2E-05 42.1 5.6 41 433-478 120-161 (224)
65 2acv_A Triterpene UDP-glucosyl 84.1 13 0.00043 39.0 14.1 132 372-520 278-424 (463)
66 2yjn_A ERYCIII, glycosyltransf 77.4 1.2 4.2E-05 46.3 3.3 45 77-127 13-57 (441)
67 1rrv_A Glycosyltransferase GTF 74.1 2.4 8.1E-05 43.7 4.3 37 85-127 1-37 (416)
68 2iya_A OLEI, oleandomycin glyc 72.8 2.5 8.7E-05 43.5 4.2 39 83-127 11-49 (424)
69 1iir_A Glycosyltransferase GTF 70.3 2.9 9.9E-05 43.0 4.0 38 85-128 1-38 (415)
70 4b4o_A Epimerase family protei 64.8 3.7 0.00013 40.0 3.2 27 100-126 6-32 (298)
71 2d1p_A TUSD, hypothetical UPF0 63.9 7.6 0.00026 33.6 4.7 41 84-127 12-53 (140)
72 2hy5_A Putative sulfurtransfer 62.6 8.3 0.00028 32.7 4.7 40 85-127 1-41 (130)
73 4f3y_A DHPR, dihydrodipicolina 58.3 12 0.00042 36.2 5.6 41 439-479 67-107 (272)
74 3ew7_A LMO0794 protein; Q8Y8U8 55.2 8.4 0.00029 35.1 3.7 33 85-127 1-33 (221)
75 3bq9_A Predicted rossmann fold 55.1 81 0.0028 32.7 11.2 69 441-521 241-332 (460)
76 3h2s_A Putative NADH-flavin re 54.4 8.8 0.0003 35.2 3.7 33 85-127 1-33 (224)
77 4gi5_A Quinone reductase; prot 54.4 12 0.0004 36.6 4.7 43 80-126 18-61 (280)
78 1rcu_A Conserved hypothetical 54.0 12 0.00041 34.4 4.4 40 441-482 114-155 (195)
79 3kjh_A CO dehydrogenase/acetyl 53.6 8 0.00027 36.2 3.3 36 85-128 1-38 (254)
80 3heb_A Response regulator rece 53.2 97 0.0033 25.7 10.7 111 400-521 4-135 (152)
81 2zay_A Response regulator rece 52.6 96 0.0033 25.4 10.0 109 400-521 8-128 (147)
82 1hdo_A Biliverdin IX beta redu 51.6 12 0.00042 33.5 4.2 34 84-127 3-36 (206)
83 3ijp_A DHPR, dihydrodipicolina 50.1 18 0.00061 35.4 5.2 41 439-479 82-122 (288)
84 3e8x_A Putative NAD-dependent 49.9 12 0.0004 34.8 3.8 36 82-127 19-54 (236)
85 3kht_A Response regulator; PSI 48.5 1.1E+02 0.0038 25.0 11.9 111 400-521 5-128 (144)
86 3nbm_A PTS system, lactose-spe 48.3 20 0.00069 29.4 4.5 44 83-132 5-48 (108)
87 3dqp_A Oxidoreductase YLBE; al 47.3 11 0.00038 34.5 3.2 33 85-127 1-33 (219)
88 3cg4_A Response regulator rece 47.0 1.1E+02 0.0039 24.7 10.2 110 399-521 6-127 (142)
89 4dzz_A Plasmid partitioning pr 46.8 11 0.00038 34.0 3.0 37 85-127 1-39 (206)
90 2pq6_A UDP-glucuronosyl/UDP-gl 45.0 16 0.00054 38.5 4.2 40 83-128 7-46 (482)
91 3gt7_A Sensor protein; structu 44.9 1.2E+02 0.0041 25.3 9.5 110 399-521 6-127 (154)
92 3grc_A Sensor protein, kinase; 43.8 1.3E+02 0.0044 24.4 10.5 109 400-521 6-127 (140)
93 3mc3_A DSRE/DSRF-like family p 43.3 26 0.00089 29.7 4.7 41 84-127 15-55 (134)
94 1fjh_A 3alpha-hydroxysteroid d 42.9 19 0.00064 33.9 4.1 34 85-127 1-34 (257)
95 1jx7_A Hypothetical protein YC 42.3 22 0.00075 28.9 3.9 40 85-127 2-43 (117)
96 3guy_A Short-chain dehydrogena 41.1 17 0.00058 33.6 3.4 34 85-127 1-34 (230)
97 1p9l_A Dihydrodipicolinate red 40.7 82 0.0028 29.7 8.2 75 402-479 2-79 (245)
98 2dkn_A 3-alpha-hydroxysteroid 40.5 21 0.00071 33.2 4.0 34 85-127 1-34 (255)
99 3hly_A Flavodoxin-like domain; 39.6 25 0.00085 30.8 4.1 38 85-127 1-38 (161)
100 1wcv_1 SOJ, segregation protei 39.5 21 0.00073 33.7 3.9 39 84-128 5-45 (257)
101 3d7l_A LIN1944 protein; APC893 37.8 21 0.00072 32.0 3.4 33 84-127 3-35 (202)
102 3kb6_A D-lactate dehydrogenase 37.5 50 0.0017 32.8 6.4 44 440-483 189-237 (334)
103 2pzm_A Putative nucleotide sug 37.3 22 0.00074 34.9 3.7 36 82-127 18-53 (330)
104 4id9_A Short-chain dehydrogena 37.3 19 0.00066 35.4 3.3 36 82-127 17-52 (347)
105 2vch_A Hydroquinone glucosyltr 36.4 20 0.00069 37.7 3.4 39 84-128 6-45 (480)
106 4e7p_A Response regulator; DNA 36.3 1.8E+02 0.0061 23.9 10.9 111 400-521 20-140 (150)
107 1lss_A TRK system potassium up 36.3 31 0.0011 28.5 4.1 33 84-127 4-36 (140)
108 2d1p_B TUSC, hypothetical UPF0 36.0 35 0.0012 28.2 4.2 39 86-127 3-41 (119)
109 2afh_E Nitrogenase iron protei 35.5 23 0.00078 34.1 3.4 38 84-128 1-40 (289)
110 2pln_A HP1043, response regula 35.5 1.4E+02 0.0049 24.0 8.2 106 400-521 18-133 (137)
111 3f6r_A Flavodoxin; FMN binding 35.1 37 0.0013 28.8 4.4 38 85-127 2-39 (148)
112 3ea0_A ATPase, para family; al 34.8 21 0.00071 33.2 2.9 39 84-128 3-44 (245)
113 2hy5_B Intracellular sulfur ox 34.7 31 0.0011 29.5 3.8 41 84-127 4-45 (136)
114 4g65_A TRK system potassium up 34.3 13 0.00043 39.1 1.4 101 373-476 211-332 (461)
115 2x4g_A Nucleoside-diphosphate- 34.3 29 0.001 33.9 4.1 34 84-127 13-46 (342)
116 3pg5_A Uncharacterized protein 33.5 25 0.00087 35.3 3.5 38 85-128 1-40 (361)
117 2z1m_A GDP-D-mannose dehydrata 33.3 26 0.00089 34.3 3.5 34 84-127 3-36 (345)
118 3l77_A Short-chain alcohol deh 33.0 35 0.0012 31.5 4.1 34 85-127 2-35 (235)
119 1zmt_A Haloalcohol dehalogenas 32.8 21 0.0007 33.7 2.5 33 85-126 1-33 (254)
120 1cp2_A CP2, nitrogenase iron p 32.1 26 0.0009 33.1 3.2 36 85-127 1-38 (269)
121 2xj4_A MIPZ; replication, cell 31.4 28 0.00097 33.5 3.3 38 85-128 4-43 (286)
122 2qsj_A DNA-binding response re 31.3 2.2E+02 0.0074 23.4 9.3 111 400-521 3-124 (154)
123 3q9l_A Septum site-determining 31.2 29 0.001 32.4 3.3 38 85-128 2-41 (260)
124 2ph1_A Nucleotide-binding prot 31.1 33 0.0011 32.4 3.7 38 85-128 18-57 (262)
125 1f4p_A Flavodoxin; electron tr 31.1 38 0.0013 28.6 3.8 38 85-127 1-38 (147)
126 3ko8_A NAD-dependent epimerase 30.9 29 0.001 33.4 3.4 33 85-127 1-33 (312)
127 3dhn_A NAD-dependent epimerase 30.7 32 0.0011 31.4 3.4 33 85-127 5-37 (227)
128 2j48_A Two-component sensor ki 30.6 1.3E+02 0.0044 23.0 6.9 105 402-519 3-116 (119)
129 3gpi_A NAD-dependent epimerase 30.4 37 0.0013 32.3 4.0 33 84-127 3-35 (286)
130 3ty2_A 5'-nucleotidase SURE; s 30.3 32 0.0011 33.0 3.3 39 83-129 10-48 (261)
131 3end_A Light-independent proto 30.1 31 0.0011 33.5 3.4 38 84-128 40-79 (307)
132 3f6c_A Positive transcription 30.1 2.1E+02 0.0071 22.7 10.3 110 401-521 2-120 (134)
133 3i6i_A Putative leucoanthocyan 30.1 33 0.0011 33.9 3.6 34 84-127 10-43 (346)
134 3l6e_A Oxidoreductase, short-c 30.0 42 0.0014 31.1 4.2 34 85-127 3-36 (235)
135 2qr3_A Two-component system re 29.4 1.6E+02 0.0055 23.6 7.5 108 401-521 4-126 (140)
136 3to5_A CHEY homolog; alpha(5)b 29.4 2.5E+02 0.0085 23.4 9.7 112 397-520 9-132 (134)
137 2q1w_A Putative nucleotide sug 29.3 37 0.0013 33.2 3.8 34 84-127 21-54 (333)
138 1rpn_A GDP-mannose 4,6-dehydra 29.0 36 0.0012 33.1 3.7 36 82-127 12-47 (335)
139 2b69_A UDP-glucuronate decarbo 29.0 38 0.0013 33.3 3.8 35 83-127 26-60 (343)
140 3r6d_A NAD-dependent epimerase 28.5 46 0.0016 30.2 4.1 34 85-127 5-39 (221)
141 3qvo_A NMRA family protein; st 28.4 35 0.0012 31.6 3.3 35 84-127 22-57 (236)
142 3auf_A Glycinamide ribonucleot 28.4 1.8E+02 0.0063 27.0 8.3 36 83-127 21-58 (229)
143 1g3q_A MIND ATPase, cell divis 28.0 36 0.0012 31.3 3.3 37 86-128 3-41 (237)
144 3ug7_A Arsenical pump-driving 27.8 45 0.0015 33.3 4.1 29 100-128 34-64 (349)
145 1ydh_A AT5G11950; structural g 27.7 2.4E+02 0.0082 25.9 8.8 40 441-482 101-148 (216)
146 3ruf_A WBGU; rossmann fold, UD 27.6 39 0.0013 33.2 3.6 34 84-127 25-58 (351)
147 3enk_A UDP-glucose 4-epimerase 27.3 41 0.0014 32.8 3.8 25 100-127 14-38 (341)
148 3zq6_A Putative arsenical pump 27.2 39 0.0013 33.3 3.5 39 84-128 12-52 (324)
149 4dad_A Putative pilus assembly 26.5 2.1E+02 0.007 23.3 7.8 68 444-521 66-141 (146)
150 2a5l_A Trp repressor binding p 26.5 61 0.0021 28.9 4.5 38 85-127 6-43 (200)
151 1dhr_A Dihydropteridine reduct 26.5 51 0.0017 30.5 4.1 34 85-127 7-40 (241)
152 2hun_A 336AA long hypothetical 26.4 36 0.0012 33.1 3.2 34 83-126 2-37 (336)
153 4hb9_A Similarities with proba 26.4 35 0.0012 34.1 3.1 30 84-124 1-30 (412)
154 3sbx_A Putative uncharacterize 26.3 1.8E+02 0.0062 26.2 7.6 41 441-483 104-152 (189)
155 1hyq_A MIND, cell division inh 26.3 40 0.0014 31.6 3.4 38 85-128 2-41 (263)
156 2p5y_A UDP-glucose 4-epimerase 26.3 40 0.0014 32.5 3.4 24 100-126 9-32 (311)
157 3eul_A Possible nitrate/nitrit 26.3 2.7E+02 0.0091 22.8 11.1 112 399-521 14-135 (152)
158 3jte_A Response regulator rece 26.3 2.5E+02 0.0087 22.5 11.3 108 401-521 4-123 (143)
159 3t6k_A Response regulator rece 26.1 2.5E+02 0.0087 22.5 10.5 109 400-521 4-124 (136)
160 3eod_A Protein HNR; response r 26.1 2.4E+02 0.0082 22.2 8.0 109 400-521 7-126 (130)
161 1y1p_A ARII, aldehyde reductas 25.9 59 0.002 31.5 4.6 34 83-126 10-43 (342)
162 3bfv_A CAPA1, CAPB2, membrane 25.8 43 0.0015 32.1 3.5 39 84-128 81-121 (271)
163 1xq6_A Unknown protein; struct 25.8 55 0.0019 30.0 4.2 25 100-127 13-39 (253)
164 2gdz_A NAD+-dependent 15-hydro 25.7 56 0.0019 30.7 4.3 32 86-126 8-39 (267)
165 3oh8_A Nucleoside-diphosphate 25.7 47 0.0016 35.0 4.1 34 84-127 147-180 (516)
166 3n53_A Response regulator rece 25.7 2.6E+02 0.0088 22.4 9.9 107 401-521 4-122 (140)
167 3iqw_A Tail-anchored protein t 25.7 37 0.0013 33.8 3.0 38 84-128 15-54 (334)
168 3c1o_A Eugenol synthase; pheny 25.6 40 0.0014 32.7 3.3 33 85-127 5-37 (321)
169 2bka_A CC3, TAT-interacting pr 25.5 40 0.0014 31.0 3.1 34 84-127 18-53 (242)
170 1rkx_A CDP-glucose-4,6-dehydra 25.1 45 0.0015 32.8 3.6 34 84-127 9-42 (357)
171 1i3c_A Response regulator RCP1 24.9 2.8E+02 0.0097 22.6 11.9 111 400-521 8-137 (149)
172 3i4f_A 3-oxoacyl-[acyl-carrier 24.8 47 0.0016 31.2 3.5 35 84-127 6-40 (264)
173 2ph3_A 3-oxoacyl-[acyl carrier 24.8 43 0.0015 30.8 3.2 32 85-125 1-32 (245)
174 1kjn_A MTH0777; hypotethical p 24.6 91 0.0031 27.1 4.8 42 82-127 4-45 (157)
175 2ydy_A Methionine adenosyltran 24.6 44 0.0015 32.2 3.4 32 85-126 3-34 (315)
176 2f62_A Nucleoside 2-deoxyribos 24.5 3.5E+02 0.012 23.5 9.2 37 441-477 63-106 (161)
177 3kux_A Putative oxidoreductase 24.3 2.8E+02 0.0095 27.2 9.4 90 371-476 7-98 (352)
178 2rjn_A Response regulator rece 24.2 2.9E+02 0.01 22.5 8.7 110 399-521 6-126 (154)
179 3mcu_A Dipicolinate synthase, 24.1 59 0.002 29.9 3.9 36 84-127 5-42 (207)
180 3tem_A Ribosyldihydronicotinam 24.1 59 0.002 30.3 3.9 40 84-127 1-41 (228)
181 1udb_A Epimerase, UDP-galactos 24.0 51 0.0017 32.1 3.7 24 100-126 9-32 (338)
182 1e6u_A GDP-fucose synthetase; 23.9 33 0.0011 33.2 2.3 32 84-125 3-34 (321)
183 4e3z_A Putative oxidoreductase 23.9 54 0.0019 31.0 3.8 35 84-127 25-59 (272)
184 1wma_A Carbonyl reductase [NAD 23.9 56 0.0019 30.5 3.9 34 85-127 4-38 (276)
185 3hzh_A Chemotaxis response reg 23.8 3.1E+02 0.011 22.6 9.4 109 400-520 36-156 (157)
186 3of5_A Dethiobiotin synthetase 23.8 79 0.0027 29.3 4.8 39 83-125 2-40 (228)
187 3lqk_A Dipicolinate synthase s 23.8 52 0.0018 30.2 3.4 36 84-127 7-44 (201)
188 3k9g_A PF-32 protein; ssgcid, 23.8 36 0.0012 32.2 2.4 38 84-128 26-65 (267)
189 3sju_A Keto reductase; short-c 23.7 60 0.0021 30.9 4.1 35 84-127 23-57 (279)
190 2e6c_A 5'-nucleotidase SURE; S 23.7 48 0.0016 31.4 3.2 37 85-129 1-37 (244)
191 1t35_A Hypothetical protein YV 23.7 62 0.0021 29.3 3.9 40 441-482 93-140 (191)
192 2phj_A 5'-nucleotidase SURE; S 23.7 48 0.0016 31.6 3.2 37 85-129 2-38 (251)
193 2czc_A Glyceraldehyde-3-phosph 23.6 1.3E+02 0.0044 29.7 6.6 37 441-477 75-111 (334)
194 3ghy_A Ketopantoate reductase 23.5 49 0.0017 32.6 3.5 33 83-126 2-34 (335)
195 1k68_A Phytochrome response re 23.5 2.7E+02 0.0094 21.9 11.5 110 401-521 3-131 (140)
196 4egb_A DTDP-glucose 4,6-dehydr 23.5 41 0.0014 33.0 2.9 35 82-126 22-56 (346)
197 1cyd_A Carbonyl reductase; sho 23.2 66 0.0023 29.5 4.2 25 100-127 16-40 (244)
198 1sb8_A WBPP; epimerase, 4-epim 23.2 52 0.0018 32.3 3.6 34 84-127 27-60 (352)
199 3r0j_A Possible two component 22.9 4.3E+02 0.015 23.9 10.9 108 400-520 23-140 (250)
200 3igf_A ALL4481 protein; two-do 22.7 69 0.0024 32.4 4.4 35 85-126 2-38 (374)
201 2pju_A Propionate catabolism o 22.6 2.5E+02 0.0086 25.9 8.0 77 387-471 93-174 (225)
202 4b4t_W RPN10, 26S proteasome r 22.6 1.9E+02 0.0065 27.6 7.3 38 372-410 109-146 (268)
203 3h5i_A Response regulator/sens 22.5 3E+02 0.01 22.1 13.2 109 400-521 5-124 (140)
204 3hdg_A Uncharacterized protein 22.5 2.9E+02 0.01 21.9 10.1 109 400-521 7-125 (137)
205 1j9j_A Stationary phase surviV 22.4 52 0.0018 31.2 3.2 37 85-129 1-37 (247)
206 2gas_A Isoflavone reductase; N 22.4 44 0.0015 32.0 2.8 33 85-127 3-35 (307)
207 1ydg_A Trp repressor binding p 22.3 84 0.0029 28.3 4.6 39 84-127 6-44 (211)
208 3fgn_A Dethiobiotin synthetase 22.3 90 0.0031 29.5 4.9 40 83-126 24-63 (251)
209 1ooe_A Dihydropteridine reduct 22.2 61 0.0021 29.8 3.7 33 86-127 4-36 (236)
210 1qyc_A Phenylcoumaran benzylic 22.2 50 0.0017 31.6 3.2 33 85-127 5-37 (308)
211 3hdv_A Response regulator; PSI 22.2 3E+02 0.01 21.8 10.0 109 400-521 7-127 (136)
212 3orf_A Dihydropteridine reduct 22.1 69 0.0024 29.9 4.1 33 86-127 23-55 (251)
213 3l4b_C TRKA K+ channel protien 22.1 57 0.002 29.7 3.4 24 104-127 9-32 (218)
214 1e2b_A Enzyme IIB-cellobiose; 22.0 1.1E+02 0.0036 24.7 4.7 44 84-133 3-46 (106)
215 3cwq_A Para family chromosome 22.0 50 0.0017 30.1 2.9 36 85-128 1-38 (209)
216 2rhc_B Actinorhodin polyketide 21.9 84 0.0029 29.8 4.7 33 86-127 23-55 (277)
217 2iz6_A Molybdenum cofactor car 21.7 3.8E+02 0.013 23.6 8.7 66 442-520 104-173 (176)
218 1dxy_A D-2-hydroxyisocaproate 21.6 1.9E+02 0.0066 28.4 7.5 45 439-483 191-240 (333)
219 2ywr_A Phosphoribosylglycinami 21.6 2E+02 0.0068 26.4 7.0 34 85-127 2-37 (216)
220 1qyd_A Pinoresinol-lariciresin 21.6 52 0.0018 31.6 3.2 34 84-127 4-37 (313)
221 3slg_A PBGP3 protein; structur 21.5 56 0.0019 32.4 3.5 34 84-127 24-58 (372)
222 3e48_A Putative nucleoside-dip 21.4 54 0.0018 31.1 3.2 33 85-127 1-34 (289)
223 2q5c_A NTRC family transcripti 21.4 1.9E+02 0.0064 26.0 6.7 79 387-473 81-164 (196)
224 3sxp_A ADP-L-glycero-D-mannohe 21.2 68 0.0023 31.7 4.0 34 84-127 10-45 (362)
225 1gy8_A UDP-galactose 4-epimera 21.2 67 0.0023 32.1 4.0 34 84-127 2-36 (397)
226 3m1a_A Putative dehydrogenase; 21.2 61 0.0021 30.7 3.5 34 85-127 5-38 (281)
227 1j4a_A D-LDH, D-lactate dehydr 20.9 2E+02 0.0067 28.4 7.3 44 439-482 193-241 (333)
228 1byi_A Dethiobiotin synthase; 20.8 60 0.0021 29.5 3.3 25 100-124 10-36 (224)
229 2nwq_A Probable short-chain de 20.7 59 0.002 31.0 3.3 33 86-127 22-54 (272)
230 3e82_A Putative oxidoreductase 20.7 2.6E+02 0.009 27.6 8.4 90 371-476 7-98 (364)
231 2ew2_A 2-dehydropantoate 2-red 20.7 69 0.0024 30.8 3.8 32 84-126 3-34 (316)
232 4ep1_A Otcase, ornithine carba 20.6 6.2E+02 0.021 25.0 11.1 85 357-454 168-256 (340)
233 3fkq_A NTRC-like two-domain pr 20.6 52 0.0018 33.1 3.0 38 84-127 142-181 (373)
234 3tfo_A Putative 3-oxoacyl-(acy 20.6 77 0.0026 30.0 4.1 33 86-127 5-37 (264)
235 1l5x_A SurviVal protein E; str 20.5 57 0.002 31.6 3.1 37 85-129 1-37 (280)
236 1o5i_A 3-oxoacyl-(acyl carrier 20.5 89 0.003 29.1 4.5 34 85-127 19-52 (249)
237 3gl9_A Response regulator; bet 20.4 3.1E+02 0.011 21.4 9.5 106 402-520 4-121 (122)
238 3rft_A Uronate dehydrogenase; 20.4 40 0.0014 31.8 2.0 34 85-127 3-36 (267)
239 1vl8_A Gluconate 5-dehydrogena 20.3 76 0.0026 30.0 4.0 34 85-127 21-54 (267)
240 1g0o_A Trihydroxynaphthalene r 20.3 1.1E+02 0.0038 28.9 5.3 33 86-127 30-62 (283)
241 2cfc_A 2-(R)-hydroxypropyl-COM 20.2 79 0.0027 29.1 4.1 33 86-127 3-35 (250)
242 2a35_A Hypothetical protein PA 20.2 54 0.0019 29.3 2.8 34 84-127 5-40 (215)
243 3e18_A Oxidoreductase; dehydro 20.2 2.9E+02 0.01 27.1 8.6 89 372-476 6-96 (359)
244 1f06_A MESO-diaminopimelate D- 20.2 1.3E+02 0.0046 29.3 5.9 38 442-479 55-92 (320)
245 3fwz_A Inner membrane protein 20.1 39 0.0013 28.5 1.6 24 104-127 16-39 (140)
246 3io3_A DEHA2D07832P; chaperone 20.0 62 0.0021 32.3 3.4 39 82-127 15-57 (348)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=6.5e-77 Score=654.22 Aligned_cols=499 Identities=68% Similarity=1.150 Sum_probs=426.5
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEEEEEEEecC
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVRFFHCYKRG 161 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (580)
...|||+||+.|++|+.|+||+|++++.|+++|+++||+|.||+|.|+.+++.++......+..+++...+++++...+|
T Consensus 7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 86 (536)
T 3vue_A 7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRG 86 (536)
T ss_dssp -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETT
T ss_pred CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred eeEEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccch
Q 008028 162 VDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTAL 241 (580)
Q Consensus 162 v~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~ 241 (580)
|++|+++++.++.+.+++++..+|++..+.||.++..+|.+|+++++++++.+++...+++.+.+++|+|+|+||||+++
T Consensus 87 v~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l 166 (536)
T 3vue_A 87 VDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGP 166 (536)
T ss_dssp EEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGST
T ss_pred ceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHH
Confidence 99999999999999888888899999999999999999999999999999999998889999999999899999999999
Q ss_pred HHHHHHHhhhccCccccceE-EEcCCCC------------------------------CCCCCccchHHHHHHhcCceeE
Q 008028 242 LPCYLKFMYQSKGIHKNAKR-LCRPRYD------------------------------KPVKGRKINWMKAGILESDRVL 290 (580)
Q Consensus 242 l~~~l~~~~~~~gi~~~~~~-~~l~~~~------------------------------~~~~~~~~~~~~~~~~~ad~vi 290 (580)
++.+++..+...+.+...++ +|+|... .......+++++.++..||+|+
T Consensus 167 ~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~ 246 (536)
T 3vue_A 167 LASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVL 246 (536)
T ss_dssp HHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEE
T ss_pred HHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEE
Confidence 99999998887788888888 9988321 1122235689999999999999
Q ss_pred eeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCC
Q 008028 291 TVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRN 370 (580)
Q Consensus 291 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~ 370 (580)
|||+.+++++.+.+..|...+...+..++.+|+||||.+.|+|.++..+..+|+..+....|..+|..+++++|++.+++
T Consensus 247 tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~ 326 (536)
T 3vue_A 247 TVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRK 326 (536)
T ss_dssp ESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred EcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCC
Confidence 99999999998866677776666777899999999999999999999999999998888899999999999999999999
Q ss_pred CcEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEE
Q 008028 371 IPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFML 450 (580)
Q Consensus 371 ~~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l 450 (580)
.|+|+|+||+.++||++.|++|++++.+++.+|+|+|.|.......++.+...+++++.+...++.+..+.+|++||++|
T Consensus 327 ~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v 406 (536)
T 3vue_A 327 IPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLA 406 (536)
T ss_dssp SCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhheee
Confidence 99999999999999999999999999888999999999998888899999999999999999999999999999999999
Q ss_pred ecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHH
Q 008028 451 VPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEM 530 (580)
Q Consensus 451 ~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~ 530 (580)
+||++|+||++++|||+||+|||+|++||+.|++.++.+||.++..+.+|.+|++.|+++++++|.++++.++++.|.+|
T Consensus 407 ~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~ 486 (536)
T 3vue_A 407 VPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEM 486 (536)
T ss_dssp ECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred cccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhcCcHHHHHH
Confidence 99999999999999999999999999999999999999999999888888999999999999999999997778889999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCCCCCcccccchhhhcCCC
Q 008028 531 IQNCMALDLSWKEPARLWEKMLLSMEVAGSEPGIEGDEIAPLARENLATP 580 (580)
Q Consensus 531 ~~~~~~~~fs~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (580)
++++|+++|||++++++|+++|+++...++.|+.++++++|+|+|++|||
T Consensus 487 ~~~am~~~fSW~~~A~~y~~ly~~L~~~~~~p~~~~~~~aP~~~~~~~~p 536 (536)
T 3vue_A 487 VRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 536 (536)
T ss_dssp HHHHHHSCCSSHHHHHHHHHHHHTTCC-----------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCCCCCCC
Confidence 99999999999999999999999998889999999999999999999998
No 2
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.6e-45 Score=400.55 Aligned_cols=438 Identities=30% Similarity=0.546 Sum_probs=331.0
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEE-EEE-eCCeEEEEEEEEEEecCe
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLA-EVK-VGDSIETVRFFHCYKRGV 162 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~gv 162 (580)
|||++|+.+++|....||++.++.+|+++|+++||+|+|+++.++.....+...... ... .++ ...+......|+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~gv 77 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAG---HITLLFGHYNGV 77 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTC---CEEEEEEEETTE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCC---cEEEEEEEECCc
Confidence 899999999888645799999999999999999999999999764322211111100 000 010 112223335789
Q ss_pred eEEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccchH
Q 008028 163 DRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTALL 242 (580)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~l 242 (580)
+++.++.+.++.+ .+ .+|+...+.+|.++..++.++.....++++.+.. ..+|| |||+|+|+++++
T Consensus 78 ~v~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~D-ivh~~~~~~~~~ 143 (485)
T 2qzs_A 78 GIYLIDAPHLYDR----PG-SPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDP--------FWRPD-VVHAHDWHAGLA 143 (485)
T ss_dssp EEEEEECHHHHCC----SS-CSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSST--------TCCCS-EEEEETGGGTTH
T ss_pred EEEEEeChhhccC----CC-CccCCcccCCCCchHHHHHHHHHHHHHHHHHhcc--------CCCCC-EEEeeccchhHH
Confidence 9998876543322 10 1555444455667777777777776666655321 02599 899999998888
Q ss_pred HHHHHH-hhhccCccccceE-EEcCCCCCCC-----------------------CCccchHHHHHHhcCceeEeeCHHHH
Q 008028 243 PCYLKF-MYQSKGIHKNAKR-LCRPRYDKPV-----------------------KGRKINWMKAGILESDRVLTVSPHYA 297 (580)
Q Consensus 243 ~~~l~~-~~~~~gi~~~~~~-~~l~~~~~~~-----------------------~~~~~~~~~~~~~~ad~vi~vS~~~~ 297 (580)
+.+++. . ...++ +++|+..... ......+++..++.+|.++++|+.++
T Consensus 144 ~~~~~~~~-------~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 216 (485)
T 2qzs_A 144 PAYLAARG-------RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYA 216 (485)
T ss_dssp HHHHHHTT-------CSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHH
T ss_pred HHHHhhcc-------CCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHH
Confidence 777652 2 13345 7777542110 00123567888999999999999999
Q ss_pred HHHHccccCCcchhhhh--hc--CCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcE
Q 008028 298 KELISGEEKGVELDNII--RK--TGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPL 373 (580)
Q Consensus 298 ~~l~~~~~~g~~~~~~~--~~--~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~ 373 (580)
+.+.+. .+|+..+.++ +. .++.+|+||+|.+.|.|..+..+..+|+..++ ..+...+..+++++|++.+++.++
T Consensus 217 ~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~ 294 (485)
T 2qzs_A 217 REITEP-QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTL-EDKAENKRQLQIAMGLKVDDKVPL 294 (485)
T ss_dssp HHTTSH-HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCG-GGGHHHHHHHHHHHTCCCCTTSCE
T ss_pred HHHhcc-ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccch-hHHHHhHHHHHHHcCCCCCCCCeE
Confidence 998752 0232221111 11 48999999999999988876666677776664 566667888999999986557789
Q ss_pred EEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecC
Q 008028 374 IGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPS 453 (580)
Q Consensus 374 i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps 453 (580)
|+|+||+.++||++.|++|++++.+++++|+|+|+|+..+.+.++++..++++++.++..+..+.+..+|+.||++|+||
T Consensus 295 i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS 374 (485)
T 2qzs_A 295 FAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPS 374 (485)
T ss_dssp EEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCSEEEECC
T ss_pred EEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhCCEEEECC
Confidence 99999999999999999999999777999999999987788889999888877787666677777788999999999999
Q ss_pred CCCCccHHHHHHHHcCCceEEcCCCCcceeEecC---------ceeEEEeecccccccCCcccHHHHHHHHHHHHHhc-C
Q 008028 454 RFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEG---------ITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATY-G 523 (580)
Q Consensus 454 ~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~---------~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~-~ 523 (580)
++|+||++++|||+||+|||+|+.||..|++.++ .+|+++ ++.|+++++++|.++++.+ +
T Consensus 375 ~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~ll~~~~~ 444 (485)
T 2qzs_A 375 RFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVF----------EDSNAWSLLRAIRRAFVLWSR 444 (485)
T ss_dssp SCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE----------CSSSHHHHHHHHHHHHHHHTS
T ss_pred ccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEE----------CCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999998 899998 9999999999999999421 2
Q ss_pred hhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Q 008028 524 TPALKEMIQNCMALDLSWKEPARLWEKMLLSMEVA 558 (580)
Q Consensus 524 ~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~~ 558 (580)
++.+.+|++++.++.|||+.++++|+++|+++...
T Consensus 445 ~~~~~~~~~~~~~~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 445 PSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhhhh
Confidence 67788899888889999999999999999998643
No 3
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=2e-45 Score=399.89 Aligned_cols=442 Identities=32% Similarity=0.535 Sum_probs=330.9
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCC-cEEEEEEeCCeEEEEEEEEEEecCee
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDT-SVLAEVKVGDSIETVRFFHCYKRGVD 163 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (580)
|||++|+.+++|....||++.++.+|+++|+++||+|+|+++.++........ ....+...... ...++......|++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gv~ 79 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLG-EKADLLEVQHERLD 79 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSS-CCEEEEEEEETTEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecC-CeEEEEEEEecCce
Confidence 89999999998864479999999999999999999999999976432221111 01111100000 01233333457899
Q ss_pred EEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHh-ccCCCCCCCCCCCCceEEEecCCccchH
Q 008028 164 RVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRIL-NLNNNKYFSGPYGEDVLFIGNDWHTALL 242 (580)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l-~~~~~~~~~~~~~pDvVih~~~~~~~~l 242 (580)
++.++.+.++.+ . ..+|+...+.+|.++..++..+..+..++++.+ +. .+|| |||+|+|+++++
T Consensus 80 v~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~D-iIh~~~~~~~~~ 144 (485)
T 1rzu_A 80 LLILDAPAYYER----S-GGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPG---------WRPD-MVHAHDWQAAMT 144 (485)
T ss_dssp EEEEECHHHHCS----S-SCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSS---------CCCS-EEEEEHHHHTTH
T ss_pred EEEEeChHHhCC----C-ccccCCcccccccchHHHHHHHHHHHHHHHHHhccC---------CCCC-EEEecccchhHH
Confidence 998876543321 1 125654445567777777777777777766554 21 2699 899999888888
Q ss_pred HHHHHHhhhccCccccceE-EEcCCCCCCC------------C-----------CccchHHHHHHhcCceeEeeCHHHHH
Q 008028 243 PCYLKFMYQSKGIHKNAKR-LCRPRYDKPV------------K-----------GRKINWMKAGILESDRVLTVSPHYAK 298 (580)
Q Consensus 243 ~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~------------~-----------~~~~~~~~~~~~~ad~vi~vS~~~~~ 298 (580)
+.+++... . ...++ +++|+..... . .....+++.+++.+|.++++|+.+++
T Consensus 145 ~~~~~~~~----~-~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 219 (485)
T 1rzu_A 145 PVYMRYAE----T-PEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAE 219 (485)
T ss_dssp HHHHHHSS----S-CCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHH
T ss_pred HHHHhhcc----c-CCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHH
Confidence 77766530 0 12344 6777542110 0 00135778889999999999999999
Q ss_pred HHHccccCCcchhhhh--hcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEE
Q 008028 299 ELISGEEKGVELDNII--RKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGF 376 (580)
Q Consensus 299 ~l~~~~~~g~~~~~~~--~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f 376 (580)
.+.+. .+|+..+.++ +..++.+|+||+|.+.|.|..+..+...|...++ ..+...+..+++++|++.++ .++|+|
T Consensus 220 ~~~~~-~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~-~~~i~~ 296 (485)
T 1rzu_A 220 EILTA-EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRIDDDG-SPLFCV 296 (485)
T ss_dssp HTTSH-HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBC-TTHHHHHHHHHHHHTCCCSS-SCEEEE
T ss_pred HHhcc-ccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccch-hhHHHhHHHHHHhcCCCCCC-CeEEEE
Confidence 98752 0121111111 2338999999999999988776666666665554 46666788899999997532 469999
Q ss_pred EccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecCCCC
Q 008028 377 IGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSRFE 456 (580)
Q Consensus 377 ~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps~~E 456 (580)
+||+.++||++.|++|+.++.+++++|+|+|+|+..+.+.++++..++++++.++..++.+.+..+++.||++|+||.+|
T Consensus 297 vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E 376 (485)
T 1rzu_A 297 ISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFE 376 (485)
T ss_dssp ESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCC
T ss_pred EccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCCEEEECcccC
Confidence 99999999999999999999777999999999987788899999888877888666678777788999999999999999
Q ss_pred CccHHHHHHHHcCCceEEcCCCCcceeEecC---------ceeEEEeecccccccCCcccHHHHHHHHHHHHHhc-ChhH
Q 008028 457 PCGLIQLHAMRYGTVPIVASTGGLFDTVKEG---------ITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATY-GTPA 526 (580)
Q Consensus 457 ~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~---------~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~-~~~~ 526 (580)
+||++++|||+||+|||+|+.||..|++.++ .+|+++ ++.|+++++++|.++++.+ +++.
T Consensus 377 ~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~ll~~~~~~~~ 446 (485)
T 1rzu_A 377 PCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQF----------SPVTLDGLKQAIRRTVRYYHDPKL 446 (485)
T ss_dssp SSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE----------SSCSHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEe----------CCCCHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999998 899998 9999999999999999421 2677
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Q 008028 527 LKEMIQNCMALDLSWKEPARLWEKMLLSMEVAGS 560 (580)
Q Consensus 527 ~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~~~~ 560 (580)
+.+|++++.++.|||+.++++|+++|++++..+.
T Consensus 447 ~~~~~~~~~~~~fs~~~~~~~~~~~y~~~~~~~~ 480 (485)
T 1rzu_A 447 WTQMQKLGMKSDVSWEKSAGLYAALYSQLISKGH 480 (485)
T ss_dssp HHHHHHHHHTCCCBHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHhhCCCC
Confidence 8899998888899999999999999999876543
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=1e-43 Score=379.53 Aligned_cols=408 Identities=25% Similarity=0.352 Sum_probs=319.6
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEEEEEEEecCe
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVRFFHCYKRGV 162 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (580)
++|||++|+.+++| ...||.+.++.+|+++|+++||+|+|+++.++...+.. ...+.+ -+.....+.+....+|+
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~gv 75 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEE--IGKIRV--FGEEVQVKVSYEERGNL 75 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEE--EEEEEE--TTEEEEEEEEEEEETTE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhh--hccccc--cCcccceeeeeccCCCc
Confidence 36999999999888 34799999999999999999999999999876544421 111122 23455666676678999
Q ss_pred eEEEecCccchhhhccCCCCcccCCCCCCCCCch-HHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccch
Q 008028 163 DRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDN-QLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTAL 241 (580)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~ 241 (580)
+++.++. .++.+ ..+|+. +.++ ..++..+.......++.+-.+ ..+|| |+|+|++++++
T Consensus 76 ~v~~~~~-~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~D-ii~~~~~~~~~ 135 (439)
T 3fro_A 76 RIYRIGG-GLLDS------EDVYGP-----GWDGLIRKAVTFGRASVLLLNDLLRE-------EPLPD-VVHFHDWHTVF 135 (439)
T ss_dssp EEEEEES-GGGGC------SSTTCS-----HHHHHHHHHHHHHHHHHHHHHHHTTT-------SCCCS-EEEEESGGGHH
T ss_pred eEEEecc-hhccc------cccccC-----CcchhhhhhHHHHHHHHHHHHHHhcc-------CCCCe-EEEecchhhhh
Confidence 9999987 44332 345542 4455 667777888888887766110 12599 89999999888
Q ss_pred HHHHHHHhhhccCccccceE-EEcCCCCCCC---------------CCccchHHHHHHhcCceeEeeCHHHHHHHHcccc
Q 008028 242 LPCYLKFMYQSKGIHKNAKR-LCRPRYDKPV---------------KGRKINWMKAGILESDRVLTVSPHYAKELISGEE 305 (580)
Q Consensus 242 l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~---------------~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~ 305 (580)
++.+++... ..++ +++|+..... ......+++..++.+|.++++|+.+++.... .
T Consensus 136 ~~~~~~~~~-------~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~--~ 206 (439)
T 3fro_A 136 AGALIKKYF-------KIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWG--F 206 (439)
T ss_dssp HHHHHHHHH-------CCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHH--H
T ss_pred hHHHHhhcc-------CCCEEEEecccccccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHhh--h
Confidence 888776543 2344 6666543221 2223367888999999999999998888432 1
Q ss_pred CCcchhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccCc-ccc
Q 008028 306 KGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLE-EQK 384 (580)
Q Consensus 306 ~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~-~~K 384 (580)
++.+ ..++.+|+||+|.+.|.|.... ..+...+..++++++++ ++ ++|+|+||+. +.|
T Consensus 207 ~~~~------~~~i~vi~ngvd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~--~~-~~i~~~G~~~~~~K 265 (439)
T 3fro_A 207 FRNF------EGKITYVFNGIDCSFWNESYLT------------GSRDERKKSLLSKFGMD--EG-VTFMFIGRFDRGQK 265 (439)
T ss_dssp HGGG------TTSEEECCCCCCTTTSCGGGSC------------SCHHHHHHHHHHHHTCC--SC-EEEEEECCSSCTTB
T ss_pred hhhc------CCceeecCCCCCchhcCccccc------------chhhhhHHHHHHHcCCC--CC-cEEEEEcccccccc
Confidence 1222 3399999999999998775321 23344578899999995 34 8999999999 999
Q ss_pred CHHHHHHHHhhhcC----CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecCCCCCccH
Q 008028 385 GSDILAQAIPKFMG----GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGL 460 (580)
Q Consensus 385 g~~~ll~a~~~l~~----~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~ 460 (580)
|++.+++|++++.+ ++++|+|+|+|...+.+.++++..++++.+.+.+..+.+.+..+++.||++++||.+|++|+
T Consensus 266 g~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~ 345 (439)
T 3fro_A 266 GVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGL 345 (439)
T ss_dssp CHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCH
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccH
Confidence 99999999999977 68999999999977789999999988844555555788888899999999999999999999
Q ss_pred HHHHHHHcCCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHH-hcChhHHHHHHHHHHH--h
Q 008028 461 IQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVA-TYGTPALKEMIQNCMA--L 537 (580)
Q Consensus 461 ~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~-~~~~~~~~~~~~~~~~--~ 537 (580)
+++|||+||+|||+|+.||..|++.++ +|+++ ++.|+++++++|.++++ + ++.+.++++++.+ +
T Consensus 346 ~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~----------~~~d~~~la~~i~~ll~~~--~~~~~~~~~~~~~~~~ 412 (439)
T 3fro_A 346 VALEAMCLGAIPIASAVGGLRDIITNE-TGILV----------KAGDPGELANAILKALELS--RSDLSKFRENCKKRAM 412 (439)
T ss_dssp HHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEE----------CTTCHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEe----------CCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887 99998 99999999999999999 5 5666677766633 7
Q ss_pred cCCchHHHHHHHHHHHHHHhc
Q 008028 538 DLSWKEPARLWEKMLLSMEVA 558 (580)
Q Consensus 538 ~fs~~~~a~~~~~~~~~l~~~ 558 (580)
+|||+.++++|.++|++++.+
T Consensus 413 ~~s~~~~~~~~~~~~~~~~~~ 433 (439)
T 3fro_A 413 SFSWEKSAERYVKAYTGSIDR 433 (439)
T ss_dssp TSCHHHHHHHHHHHHHTCSCC
T ss_pred hCcHHHHHHHHHHHHHHHHHh
Confidence 799999999999999988743
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=4.5e-38 Score=336.85 Aligned_cols=392 Identities=18% Similarity=0.237 Sum_probs=275.2
Q ss_pred CCcccccCCCceEEEEeecccCcc-----ccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeE
Q 008028 75 PSKKIICQQGMNLVFVGAEVAPWS-----KTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSI 149 (580)
Q Consensus 75 ~~~~~~~~~~mkI~~vs~e~~P~~-----~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~ 149 (580)
+.+....++.|||++|+..++|.. ..||.+.++..|+++|+++||+|+++++........ .
T Consensus 11 ~~~~~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-----~--------- 76 (438)
T 3c48_A 11 SSGLVPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE-----I--------- 76 (438)
T ss_dssp --------CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS-----E---------
T ss_pred ccCcccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc-----c---------
Confidence 334444467799999999988842 269999999999999999999999999864211110 0
Q ss_pred EEEEEEEEEecCeeEEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHH-hHHhccCCCCCCCCCCCC
Q 008028 150 ETVRFFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEA-PRILNLNNNKYFSGPYGE 228 (580)
Q Consensus 150 ~~~~~~~~~~~gv~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~-~r~l~~~~~~~~~~~~~p 228 (580)
.....++.++.+....+... ........+..+....++. ++... +|
T Consensus 77 ------~~~~~~v~v~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 123 (438)
T 3c48_A 77 ------VRVAENLRVINIAAGPYEGL----------------SKEELPTQLAAFTGGMLSFTRREKV-----------TY 123 (438)
T ss_dssp ------EEEETTEEEEEECCSCSSSC----------------CGGGGGGGHHHHHHHHHHHHHHHTC-----------CC
T ss_pred ------ccccCCeEEEEecCCCcccc----------------chhHHHHHHHHHHHHHHHHHHhccC-----------CC
Confidence 01134666666643221100 0000000111122222332 22221 38
Q ss_pred ceEEEecCCccchHHHHHHHhhhccCccccceE-EEcCCCCCCCCC-----------ccchHHHHHHhcCceeEeeCHHH
Q 008028 229 DVLFIGNDWHTALLPCYLKFMYQSKGIHKNAKR-LCRPRYDKPVKG-----------RKINWMKAGILESDRVLTVSPHY 296 (580)
Q Consensus 229 DvVih~~~~~~~~l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~~~-----------~~~~~~~~~~~~ad~vi~vS~~~ 296 (580)
| |+|+|.+..++++..++... ..++ +++|+....... ....+.+..++.+|.++++|+..
T Consensus 124 D-iv~~~~~~~~~~~~~~~~~~-------~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 195 (438)
T 3c48_A 124 D-LIHSHYWLSGQVGWLLRDLW-------RIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNTQEE 195 (438)
T ss_dssp S-EEEEEHHHHHHHHHHHHHHH-------TCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHHHHHHCSEEEESSHHH
T ss_pred C-EEEeCCccHHHHHHHHHHHc-------CCCEEEEecCCcccccccccccCCcchHHHHHHHHHHHhcCCEEEEcCHHH
Confidence 9 89999877666665555443 2234 666654211100 01123466778999999999999
Q ss_pred HHHHHccccCCcchhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEE
Q 008028 297 AKELISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGF 376 (580)
Q Consensus 297 ~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f 376 (580)
++.+.+ .+|++.+ ++.+|+||+|...|.+.... .+..++++++++ ++.++|+|
T Consensus 196 ~~~~~~--~~g~~~~------k~~vi~ngvd~~~~~~~~~~-----------------~~~~~r~~~~~~--~~~~~i~~ 248 (438)
T 3c48_A 196 MQDLMH--HYDADPD------RISVVSPGADVELYSPGNDR-----------------ATERSRRELGIP--LHTKVVAF 248 (438)
T ss_dssp HHHHHH--HHCCCGG------GEEECCCCCCTTTSCCC---------------------CHHHHHHTTCC--SSSEEEEE
T ss_pred HHHHHH--HhCCChh------heEEecCCccccccCCcccc-----------------hhhhhHHhcCCC--CCCcEEEE
Confidence 999876 2455544 89999999999888765321 123478888885 35589999
Q ss_pred EccCccccCHHHHHHHHhhhcC--C--CeEEEEEec----CChhhHHHHHHHHHHCC--CCeeEeccCChHHHHHHHhcC
Q 008028 377 IGRLEEQKGSDILAQAIPKFMG--G--NVQIVVLGT----GKKPMEQQIEQLEIICP--EKARGITKFSTPLAHKIIAGA 446 (580)
Q Consensus 377 ~Grl~~~Kg~~~ll~a~~~l~~--~--~v~lii~G~----g~~~~~~~i~~l~~~~~--~~v~~~~~~~~~~~~~~~~~a 446 (580)
+||+.++||++.+++|+.++.+ + +++|+|+|. |. ..+.++++..+++ +++.+.+..+.+.+..+|+.|
T Consensus 249 ~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~--~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~a 326 (438)
T 3c48_A 249 VGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNA--TPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAA 326 (438)
T ss_dssp ESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC--------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHC
T ss_pred EeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCc--HHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhC
Confidence 9999999999999999999865 2 799999998 53 4556666666543 578888888878888899999
Q ss_pred CEEEecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhH
Q 008028 447 DFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPA 526 (580)
Q Consensus 447 Di~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~ 526 (580)
|++|+||..|++|++++|||+||+|||+++.||..|++.++.+|+++ ++.|+++++++|.+++++ ++.
T Consensus 327 dv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~d~~~la~~i~~l~~~--~~~ 394 (438)
T 3c48_A 327 DIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV----------DGHSPHAWADALATLLDD--DET 394 (438)
T ss_dssp SEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEE----------SSCCHHHHHHHHHHHHHC--HHH
T ss_pred CEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEEC----------CCCCHHHHHHHHHHHHcC--HHH
Confidence 99999999999999999999999999999999999999999999998 999999999999999997 667
Q ss_pred HHHHHHHH---HHhcCCchHHHHHHHHHHHHHHhcCCCCC
Q 008028 527 LKEMIQNC---MALDLSWKEPARLWEKMLLSMEVAGSEPG 563 (580)
Q Consensus 527 ~~~~~~~~---~~~~fs~~~~a~~~~~~~~~l~~~~~~~~ 563 (580)
+.+|++++ +.+ |||+.++++|.++|++++......+
T Consensus 395 ~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T 3c48_A 395 RIRMGEDAVEHART-FSWAATAAQLSSLYNDAIANENVDG 433 (438)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhcccCC
Confidence 77777665 334 9999999999999999997654433
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=9.4e-38 Score=340.83 Aligned_cols=391 Identities=16% Similarity=0.127 Sum_probs=279.0
Q ss_pred CceEEEEeecccCcc---------ccccHHHHhccchHHHHhCCCeEEEEEecCCccc-cccCCcEEEEEEeCCeEEEEE
Q 008028 84 GMNLVFVGAEVAPWS---------KTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYK-DAWDTSVLAEVKVGDSIETVR 153 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~---------~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~ 153 (580)
.|||++|+..++|.. ..||.+.++.+|+++|+++||+|+|+++...... ..+...
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~--------------- 71 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGE--------------- 71 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCS---------------
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhh---------------
Confidence 599999999887742 3699999999999999999999999998643211 100000
Q ss_pred EEEEE--ecCeeEEEecCccc--hhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCc
Q 008028 154 FFHCY--KRGVDRVFVDHPVF--LEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGED 229 (580)
Q Consensus 154 ~~~~~--~~gv~~~~l~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pD 229 (580)
.... ..|++++.+..... ..+ ..++ .. ...+.....+.++.... +||
T Consensus 72 -~~~~~~~~gv~v~~~~~~~~~~~~~------~~~~---------~~---~~~~~~~l~~~l~~~~~----------~~D 122 (499)
T 2r60_A 72 -IDYYQETNKVRIVRIPFGGDKFLPK------EELW---------PY---LHEYVNKIINFYREEGK----------FPQ 122 (499)
T ss_dssp -EEECTTCSSEEEEEECCSCSSCCCG------GGCG---------GG---HHHHHHHHHHHHHHHTC----------CCS
T ss_pred -HHhccCCCCeEEEEecCCCcCCcCH------HHHH---------HH---HHHHHHHHHHHHHhcCC----------CCC
Confidence 0000 24566665543211 000 0000 00 11122333444444211 489
Q ss_pred eEEEecCCccchHHHHHHHhhhccCccccceE-EEcCCCCCCCC------C-------------ccchHHHHHHhcCcee
Q 008028 230 VLFIGNDWHTALLPCYLKFMYQSKGIHKNAKR-LCRPRYDKPVK------G-------------RKINWMKAGILESDRV 289 (580)
Q Consensus 230 vVih~~~~~~~~l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~~------~-------------~~~~~~~~~~~~ad~v 289 (580)
|||+|.+..++++..++...+ .++ ++.|+...... . ....+++..++.+|.+
T Consensus 123 -ivh~~~~~~~~~~~~~~~~~~-------~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 194 (499)
T 2r60_A 123 -VVTTHYGDGGLAGVLLKNIKG-------LPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKI 194 (499)
T ss_dssp -EEEEEHHHHHHHHHHHHHHHC-------CCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEE
T ss_pred -EEEEcCCcchHHHHHHHHhcC-------CcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEE
Confidence 899998776666665554432 234 67775321100 0 0112346778899999
Q ss_pred EeeCHHHHHHHHccccCC-c----chhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcC
Q 008028 290 LTVSPHYAKELISGEEKG-V----ELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLG 364 (580)
Q Consensus 290 i~vS~~~~~~l~~~~~~g-~----~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 364 (580)
+++|+..++.+.+...+| + +.+ ++.+|+||+|.+.|.+... ...+..+++++|
T Consensus 195 i~~S~~~~~~~~~~~~~g~~~~~~~~~------ki~vi~ngvd~~~~~~~~~----------------~~~~~~~r~~~~ 252 (499)
T 2r60_A 195 IVSTSQERFGQYSHDLYRGAVNVEDDD------KFSVIPPGVNTRVFDGEYG----------------DKIKAKITKYLE 252 (499)
T ss_dssp EESSHHHHHHTTTSGGGTTTCCTTCGG------GEEECCCCBCTTTSSSCCC----------------HHHHHHHHHHHH
T ss_pred EECCHHHHHHHHhhhcccccccccCCC------CeEEECCCcChhhcCccch----------------hhhHHHHHHHhc
Confidence 999999999987620024 3 333 8999999999988876532 112456777777
Q ss_pred -----CCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC---CCeEEEEEec--CC----h-------hhHHHHHHHHHH
Q 008028 365 -----LPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG---GNVQIVVLGT--GK----K-------PMEQQIEQLEII 423 (580)
Q Consensus 365 -----lp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~---~~v~lii~G~--g~----~-------~~~~~i~~l~~~ 423 (580)
++ ++.++|+|+||+.++||++.+++|+.++.+ ..++++|+|+ |+ . .+.+.++++..+
T Consensus 253 ~~~~~~~--~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~ 330 (499)
T 2r60_A 253 RDLGSER--MELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDN 330 (499)
T ss_dssp HHSCGGG--TTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccccccC--CCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHh
Confidence 64 355899999999999999999999999865 2468999998 32 1 126777777776
Q ss_pred CC--CCeeEeccCChHHHHHHHhcC----CEEEecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEecCceeEEEeecc
Q 008028 424 CP--EKARGITKFSTPLAHKIIAGA----DFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFH 497 (580)
Q Consensus 424 ~~--~~v~~~~~~~~~~~~~~~~~a----Di~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~~~~~~~ 497 (580)
++ ++|.+.+..+.+.+..+|+.| |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|+++
T Consensus 331 ~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~---- 406 (499)
T 2r60_A 331 NDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLV---- 406 (499)
T ss_dssp TTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEE----
T ss_pred cCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEe----
Confidence 54 568888888888888899999 99999999999999999999999999999999999999999999998
Q ss_pred cccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHHH---HHhcCCchHHHHHHHHHHHHHHhcCCCC
Q 008028 498 VECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNC---MALDLSWKEPARLWEKMLLSMEVAGSEP 562 (580)
Q Consensus 498 ~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~~~l~~~~~~~ 562 (580)
++.|+++++++|.+++++ ++.+.++++++ +.+.|||+.++++|.++|++++......
T Consensus 407 ------~~~d~~~la~~i~~ll~~--~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~~~ 466 (499)
T 2r60_A 407 ------DPEDPEDIARGLLKAFES--EETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDEE 466 (499)
T ss_dssp ------CTTCHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC----
T ss_pred ------CCCCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999996 66777777666 4456999999999999999998765443
No 7
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=4.8e-37 Score=323.27 Aligned_cols=366 Identities=19% Similarity=0.239 Sum_probs=273.0
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccc-cccCCcEEEEEEeCCeEEEEEEEEEEecC
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYK-DAWDTSVLAEVKVGDSIETVRFFHCYKRG 161 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (580)
+.|||++|+..++|. .||.+.++..++++| .||+|+|+++...... ...+ ...+
T Consensus 3 ~~mkIl~v~~~~~p~--~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~---------------------~~~~ 57 (394)
T 3okp_A 3 ASRKTLVVTNDFPPR--IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYD---------------------KTLD 57 (394)
T ss_dssp -CCCEEEEESCCTTS--CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHH---------------------TTCS
T ss_pred CCceEEEEeCccCCc--cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhc---------------------cccc
Confidence 469999999998887 699999999999999 6999999999754221 0000 0123
Q ss_pred eeEEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccc-
Q 008028 162 VDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTA- 240 (580)
Q Consensus 162 v~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~- 240 (580)
+.++.+........ ..+.....+.++.. +|| |+|+|.....
T Consensus 58 ~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~~~------------~~D-vv~~~~~~~~~ 99 (394)
T 3okp_A 58 YEVIRWPRSVMLPT-------------------------PTTAHAMAEIIRER------------EID-NVWFGAAAPLA 99 (394)
T ss_dssp SEEEEESSSSCCSC-------------------------HHHHHHHHHHHHHT------------TCS-EEEESSCTTGG
T ss_pred eEEEEccccccccc-------------------------hhhHHHHHHHHHhc------------CCC-EEEECCcchHH
Confidence 44444432211110 01233344444443 589 7888765443
Q ss_pred hHHHHHHHhhhccCccccceE-EEcCCCCCCC--CCccchHHHHHHhcCceeEeeCHHHHHHHHccccCCcchhhhhhcC
Q 008028 241 LLPCYLKFMYQSKGIHKNAKR-LCRPRYDKPV--KGRKINWMKAGILESDRVLTVSPHYAKELISGEEKGVELDNIIRKT 317 (580)
Q Consensus 241 ~l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~--~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~ 317 (580)
++...++.. + ..++ ++.|+..... ......+++..++.+|.++++|+..++.+.+.+ +. ..
T Consensus 100 ~~~~~~~~~----~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~--~~-------~~ 163 (394)
T 3okp_A 100 LMAGTAKQA----G---ASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAF--GS-------HP 163 (394)
T ss_dssp GGHHHHHHT----T---CSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHHHH--CS-------SS
T ss_pred HHHHHHHhc----C---CCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHHhc--CC-------CC
Confidence 333333332 1 2234 6677543221 112234457788999999999999999998622 21 22
Q ss_pred CeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhc
Q 008028 318 GISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFM 397 (580)
Q Consensus 318 ~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~ 397 (580)
++.+|+||+|.+.|.+... ..+..++++++++ ++.++|+|+||+.+.||++.+++++.++.
T Consensus 164 ~~~vi~ngv~~~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~~i~~~G~~~~~Kg~~~li~a~~~l~ 224 (394)
T 3okp_A 164 TFEHLPSGVDVKRFTPATP-----------------EDKSATRKKLGFT--DTTPVIACNSRLVPRKGQDSLIKAMPQVI 224 (394)
T ss_dssp EEEECCCCBCTTTSCCCCH-----------------HHHHHHHHHTTCC--TTCCEEEEESCSCGGGCHHHHHHHHHHHH
T ss_pred CeEEecCCcCHHHcCCCCc-----------------hhhHHHHHhcCCC--cCceEEEEEeccccccCHHHHHHHHHHHH
Confidence 8999999999998876321 2367788999986 44589999999999999999999999986
Q ss_pred C--CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecCCC-------CCccHHHHHHHHc
Q 008028 398 G--GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSRF-------EPCGLIQLHAMRY 468 (580)
Q Consensus 398 ~--~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps~~-------E~~g~~~lEAma~ 468 (580)
+ ++++|+|+|+|. ..+.++++.....+++.+.+..+.+.+..+++.||++++||.+ |++|++++|||++
T Consensus 225 ~~~~~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~ 302 (394)
T 3okp_A 225 AARPDAQLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQAC 302 (394)
T ss_dssp HHSTTCEEEEECCCT--THHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHT
T ss_pred hhCCCeEEEEEcCch--HHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHc
Confidence 5 689999999987 4566666665555679998888888888999999999999999 9999999999999
Q ss_pred CCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHHH---HHhcCCchHHH
Q 008028 469 GTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNC---MALDLSWKEPA 545 (580)
Q Consensus 469 G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a 545 (580)
|+|||+++.||..|++.++ +|+++ ++.|+++++++|.+++++ ++.+.++++++ +.+.|||+.++
T Consensus 303 G~PvI~~~~~~~~e~i~~~-~g~~~----------~~~d~~~l~~~i~~l~~~--~~~~~~~~~~~~~~~~~~~s~~~~~ 369 (394)
T 3okp_A 303 GVPVIAGTSGGAPETVTPA-TGLVV----------EGSDVDKLSELLIELLDD--PIRRAAMGAAGRAHVEAEWSWEIMG 369 (394)
T ss_dssp TCCEEECSSTTGGGGCCTT-TEEEC----------CTTCHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred CCCEEEeCCCChHHHHhcC-CceEe----------CCCCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999998 99997 899999999999999996 77777777766 44679999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 008028 546 RLWEKMLLSMEVAGSE 561 (580)
Q Consensus 546 ~~~~~~~~~l~~~~~~ 561 (580)
++|.++|+++......
T Consensus 370 ~~~~~~~~~~~r~~~~ 385 (394)
T 3okp_A 370 ERLTNILQSEPRKLAA 385 (394)
T ss_dssp HHHHHHHHSCCC----
T ss_pred HHHHHHHHHhccCcch
Confidence 9999999988765444
No 8
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=100.00 E-value=4.5e-37 Score=339.23 Aligned_cols=440 Identities=14% Similarity=0.134 Sum_probs=311.1
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEEecCC--------------ccccccCC----------cEEEEEEeCCe-------
Q 008028 100 TGGLGDVLGGLPPALAARGHRVMSVAPRYD--------------QYKDAWDT----------SVLAEVKVGDS------- 148 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~--------------~~~~~~~~----------~~~~~~~~~~~------- 148 (580)
.||+|++++.+.++++.+|.+.+.++.+|. ..++.|.. ...+++..+++
T Consensus 113 nGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d~wl~~g~pwe~~r~~~~~~V~f~g~~v~a~~y 192 (796)
T 2c4m_A 113 NGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCFDDMKTRAIPY 192 (796)
T ss_dssp CSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCSSSSCCTTSEECGGGCEEEEETTEEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEeeCCccccCCCceeEecCCcEEEEEeCCEEEEEEEE
Confidence 899999999999999999999999999986 11233321 22333333433
Q ss_pred -----------EEEEEEEEEEecCeeEEEecC---cc----chhhhccC--CCCcccCCCCC-CCCCchHHHHHHHHHHH
Q 008028 149 -----------IETVRFFHCYKRGVDRVFVDH---PV----FLEKVWGK--TGSKIYGPKAG-LDYEDNQLRFSLLCQAA 207 (580)
Q Consensus 149 -----------~~~~~~~~~~~~gv~~~~l~~---~~----~~~~~~~~--~~~~~y~~~~~-~~~~~~~~~~~~l~~~~ 207 (580)
+.+.|+|...... .+.++. .. ..++.+.+ |. .+|++.+. .....|+.|..+|+.++
T Consensus 193 d~pi~gy~~~~~n~lrlW~a~~~~--~f~l~~fn~gdy~~a~~~~~~~~~It~-~LYp~D~~~~Gk~lRL~Qe~ff~~a~ 269 (796)
T 2c4m_A 193 DMPITGYGTHNVGTLRLWKAEPWE--EFDYDAFNAQRFTDAIIERERVSDICR-VLYPNDTTYEGKKLRVRQQYFFTSAS 269 (796)
T ss_dssp EEEECCTTCCCCEEEEEEEEEESS--SSCHHHHHTTCHHHHHHHHHHHHHHHH-SSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred eccccCcCCCceEEEEEEeccccc--ccchhhccCcchhhhhhchHhhhchhh-cCcCCCCCcchHHHHHHhHHHHHHHH
Confidence 3444455443322 111111 01 01112222 22 68986320 01466889999999999
Q ss_pred HHH-hHHhccCCCCCCCCCCCCceEEEecCCccchHHH-HHHHhhhccCcc-------ccceE-EEcCCCCCC-------
Q 008028 208 LEA-PRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPC-YLKFMYQSKGIH-------KNAKR-LCRPRYDKP------- 270 (580)
Q Consensus 208 ~~~-~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~l~~-~l~~~~~~~gi~-------~~~~~-~~l~~~~~~------- 270 (580)
++. ++.+......|-.=+ .|+ |||+||||+++++. +++.++...|+. ...++ ||.|...+.
T Consensus 270 lq~ilr~~~~~~~~l~~l~-~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~ 347 (796)
T 2c4m_A 270 LQAMIQDHLAHHKDLSNFA-EFH-SVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDE 347 (796)
T ss_dssp HHHHHHHHHHHSSCSTTHH-HHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEH
T ss_pred HHHHHHHHHHhCCChhhcC-CCe-EEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCH
Confidence 986 664422100000000 377 99999999999998 476665333332 12334 776621110
Q ss_pred ----------------------------------------CCCccchHHHHHHhcCceeEeeCHHHHHHHHccccCCcch
Q 008028 271 ----------------------------------------VKGRKINWMKAGILESDRVLTVSPHYAKELISGEEKGVEL 310 (580)
Q Consensus 271 ----------------------------------------~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~ 310 (580)
.....++|++.++..|+.|++||+.+++.++.....++-
T Consensus 348 ~l~~~~lpr~~~ii~~I~~~~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~~~~- 426 (796)
T 2c4m_A 348 QIFQQLFWRVWEIIAEIDRRFRLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLADWY- 426 (796)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTHHHH-
T ss_pred HHHHHHhHHHHHHHcCcCHHHHHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhhhhhHH-
Confidence 112368999999999999999999999999853222221
Q ss_pred hhhhhcCCeeEecCCCCCCCc----CCCCccccccccC-----------------chh------hhccchHHHHH----H
Q 008028 311 DNIIRKTGISGIVNGMDVQEW----NPSTDRYINVNYD-----------------ATT------VMNAKPLVKEA----L 359 (580)
Q Consensus 311 ~~~~~~~~i~~I~NGvd~~~~----~~~~~~~l~~~~~-----------------~~~------~~~~~~~~~~~----~ 359 (580)
+ +...++..|+||||...| +|..++.|...|. .++ +...|..+|.. +
T Consensus 427 -~-~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l 504 (796)
T 2c4m_A 427 -A-LWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWI 504 (796)
T ss_dssp -H-HCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -H-cCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 123489999999999999 6776666666555 333 34567777877 5
Q ss_pred HHHcCCCCCCCCcEEEEEccCccccCHHH-HHHHHhhhcC---------CCeEEEEEecCC------hhhHHHHHHHHH-
Q 008028 360 QSQLGLPVDRNIPLIGFIGRLEEQKGSDI-LAQAIPKFMG---------GNVQIVVLGTGK------KPMEQQIEQLEI- 422 (580)
Q Consensus 360 ~~~~glp~~~~~~~i~f~Grl~~~Kg~~~-ll~a~~~l~~---------~~v~lii~G~g~------~~~~~~i~~l~~- 422 (580)
++++|++.+++.++++++.|+.++||.++ ++.++.++.+ .++||||+|++. +.+++.+.+++.
T Consensus 505 ~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~ 584 (796)
T 2c4m_A 505 LERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADL 584 (796)
T ss_dssp HHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999 8999887753 489999999986 455666888887
Q ss_pred -----HCCC--CeeEeccCChHHHHHHHhcCCEEEecCC--CCCccHHHHHHHHcCCceEEcCCCCcceeEec--CceeE
Q 008028 423 -----ICPE--KARGITKFSTPLAHKIIAGADFMLVPSR--FEPCGLIQLHAMRYGTVPIVASTGGLFDTVKE--GITGF 491 (580)
Q Consensus 423 -----~~~~--~v~~~~~~~~~~~~~~~~~aDi~l~ps~--~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G~ 491 (580)
++++ +|+|+..|+..+++.++++||++++||+ +|+||++.|.+|.+|++.|.+-.|.+.|+.++ .+|||
T Consensus 585 in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF 664 (796)
T 2c4m_A 585 VNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAY 664 (796)
T ss_dssp HHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSE
T ss_pred hccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEE
Confidence 7788 8999999999999999999999999999 99999999999999998886666666665443 46999
Q ss_pred EEeecccccccCCcccHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Q 008028 492 QMRSFHVECDRVDLADVAAIAKHVNRAVATYG-TPALKEMIQNCMALDLSWKEPARLWEKMLLSMEV 557 (580)
Q Consensus 492 ~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~-~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~ 557 (580)
.||. ...++.++-.+ ++..+.|. .+.+.++..+.+...|||... .+|.++|.+++.
T Consensus 665 ~FG~--------~~~ev~~l~~~-y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 665 IFGA--------RVEELPALRES-YKPYELYETVPGLKRALDALDNGTLNDNNS-GLFYDLKHSLIH 721 (796)
T ss_dssp EESC--------CTTTHHHHHHT-CCHHHHHHHSTTHHHHHHTTTSSSSCCTTC-CHHHHHHHHHHS
T ss_pred EecC--------chhhHHHHHHh-hChHHHhhcCHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHh
Confidence 9951 22667777666 66655442 246888888888899999887 889999999874
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=8.8e-36 Score=314.93 Aligned_cols=374 Identities=19% Similarity=0.167 Sum_probs=258.0
Q ss_pred CCccccc-CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEE
Q 008028 75 PSKKIIC-QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVR 153 (580)
Q Consensus 75 ~~~~~~~-~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (580)
|+|.... ...|+.-+.+..+ |. .||.+.++..|+++|+++||+|+++++..+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-p~--~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~-------------------- 59 (394)
T 2jjm_A 3 YMGSSHHHHHHMKLKIGITCY-PS--VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN-------------------- 59 (394)
T ss_dssp ------------CCEEEEECC-C----CHHHHHHHHHHHHHHHTTCEEEEECSSCC------------------------
T ss_pred cccccccchhhheeeeehhcC-CC--CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc--------------------
Confidence 4443332 3458877777775 54 5999999999999999999999999985321000
Q ss_pred EEEEEecCeeEEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEE
Q 008028 154 FFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFI 233 (580)
Q Consensus 154 ~~~~~~~gv~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih 233 (580)
....++.++.++.+.+. .+. +... ...+.....+.++.. +|| |+|
T Consensus 60 ---~~~~~i~~~~~~~~~~~----------~~~------~~~~---~~~~~~~l~~~l~~~------------~~D-vv~ 104 (394)
T 2jjm_A 60 ---KVYPNIYFHEVTVNQYS----------VFQ------YPPY---DLALASKMAEVAQRE------------NLD-ILH 104 (394)
T ss_dssp ---CCCTTEEEECCCCC--------------CC------SCCH---HHHHHHHHHHHHHHH------------TCS-EEE
T ss_pred ---ccCCceEEEeccccccc----------ccc------cccc---cHHHHHHHHHHHHHc------------CCC-EEE
Confidence 01123333222211110 000 0000 111223334444443 599 899
Q ss_pred ecCCccchHHHH-HHHhhhccCccccceE-EEcCCCCC---CCCCccchHHHHHHhcCceeEeeCHHHHHHHHccccCCc
Q 008028 234 GNDWHTALLPCY-LKFMYQSKGIHKNAKR-LCRPRYDK---PVKGRKINWMKAGILESDRVLTVSPHYAKELISGEEKGV 308 (580)
Q Consensus 234 ~~~~~~~~l~~~-l~~~~~~~gi~~~~~~-~~l~~~~~---~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~ 308 (580)
+|.+....+... .+...+ ...++ +++|+... ........+++..++.+|.++++|+..++.+.+.+ +.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~-----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~--~~ 177 (394)
T 2jjm_A 105 VHYAIPHAICAYLAKQMIG-----ERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELV--KP 177 (394)
T ss_dssp ECSSTTHHHHHHHHHHHTT-----TCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHHHHHHHT--CC
T ss_pred EcchhHHHHHHHHHHHhhc-----CCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhh--CC
Confidence 986654433333 333321 13455 66665311 11122234567788999999999999999988621 21
Q ss_pred chhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccCccccCHHH
Q 008028 309 ELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQKGSDI 388 (580)
Q Consensus 309 ~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ 388 (580)
..++.+|+||+|.+.|.+.. +..++++++++ ++.++|+|+||+.++||++.
T Consensus 178 -------~~~~~vi~ngv~~~~~~~~~--------------------~~~~~~~~~~~--~~~~~i~~~G~~~~~Kg~~~ 228 (394)
T 2jjm_A 178 -------NKDIQTVYNFIDERVYFKRD--------------------MTQLKKEYGIS--ESEKILIHISNFRKVKRVQD 228 (394)
T ss_dssp -------SSCEEECCCCCCTTTCCCCC--------------------CHHHHHHTTCC-----CEEEEECCCCGGGTHHH
T ss_pred -------cccEEEecCCccHHhcCCcc--------------------hHHHHHHcCCC--CCCeEEEEeeccccccCHHH
Confidence 12899999999998887653 24567788875 34589999999999999999
Q ss_pred HHHHHhhhcC-CCeEEEEEecCChhhHHHHHHHHHHCC--CCeeEeccCChHHHHHHHhcCCEEEecCCCCCccHHHHHH
Q 008028 389 LAQAIPKFMG-GNVQIVVLGTGKKPMEQQIEQLEIICP--EKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHA 465 (580)
Q Consensus 389 ll~a~~~l~~-~~v~lii~G~g~~~~~~~i~~l~~~~~--~~v~~~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEA 465 (580)
+++|+.++.+ .+++|+|+|+|. ..+.++++..+++ +++.+.+. . +.+..+++.||++++||.+|++|++++||
T Consensus 229 li~a~~~l~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~g~-~-~~~~~~~~~adv~v~ps~~e~~~~~~~EA 304 (394)
T 2jjm_A 229 VVQAFAKIVTEVDAKLLLVGDGP--EFCTILQLVKNLHIEDRVLFLGK-Q-DNVAELLAMSDLMLLLSEKESFGLVLLEA 304 (394)
T ss_dssp HHHHHHHHHHSSCCEEEEECCCT--THHHHHHHHHTTTCGGGBCCCBS-C-SCTHHHHHTCSEEEECCSCCSCCHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCch--HHHHHHHHHHHcCCCCeEEEeCc-h-hhHHHHHHhCCEEEeccccCCCchHHHHH
Confidence 9999999865 579999999987 4566666666554 45777663 3 34556999999999999999999999999
Q ss_pred HHcCCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHHH---HHhcCCch
Q 008028 466 MRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNC---MALDLSWK 542 (580)
Q Consensus 466 ma~G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~~---~~~~fs~~ 542 (580)
|+||+|||+++.||..|++.++.+|+++ ++.|+++++++|.+++++ ++.+.+|++++ +.+.|||+
T Consensus 305 ma~G~PvI~~~~~~~~e~v~~~~~g~~~----------~~~d~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~~s~~ 372 (394)
T 2jjm_A 305 MACGVPCIGTRVGGIPEVIQHGDTGYLC----------EVGDTTGVADQAIQLLKD--EELHRNMGERARESVYEQFRSE 372 (394)
T ss_dssp HHTTCCEEEECCTTSTTTCCBTTTEEEE----------CTTCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHSCHH
T ss_pred HhcCCCEEEecCCChHHHhhcCCceEEe----------CCCCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999998 999999999999999997 66777777666 34789999
Q ss_pred HHHHHHHHHHHHHHhc
Q 008028 543 EPARLWEKMLLSMEVA 558 (580)
Q Consensus 543 ~~a~~~~~~~~~l~~~ 558 (580)
.++++|+++|++++..
T Consensus 373 ~~~~~~~~~~~~~~~~ 388 (394)
T 2jjm_A 373 KIVSQYETIYYDVLRD 388 (394)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998754
No 10
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=100.00 E-value=6.7e-37 Score=337.89 Aligned_cols=441 Identities=14% Similarity=0.177 Sum_probs=308.2
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEEecCC--------------ccccccCC----------cEEEEEEeCC--------
Q 008028 100 TGGLGDVLGGLPPALAARGHRVMSVAPRYD--------------QYKDAWDT----------SVLAEVKVGD-------- 147 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~--------------~~~~~~~~----------~~~~~~~~~~-------- 147 (580)
.||+|++++.+.++++.+|.+.+.++.+|. ..++.|.. ...+++.+++
T Consensus 112 nGGLGrLAacfldS~a~l~~p~~G~Gi~Y~~G~F~Q~i~dG~Q~E~~d~wl~~~~pwe~~r~~~~~~V~f~g~~~~~~~w 191 (796)
T 1l5w_A 112 NGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKVTKDGRW 191 (796)
T ss_dssp CSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCCCGGGCTTCEECGGGCEEEEESCEECTTSCE
T ss_pred CCcHHHHHHHHHHHHHhCCCCeEEEeeeecCCceeEEecCCeeEEecCccccCCCcceeecCCcEEEEeeCCEEeeccee
Confidence 799999999999999999999999999986 11232321 1222333333
Q ss_pred ---------------------eEEEEEEEEEEecCeeEEEecC---cc----chhhhccC--CCCcccCCCCC-CCCCch
Q 008028 148 ---------------------SIETVRFFHCYKRGVDRVFVDH---PV----FLEKVWGK--TGSKIYGPKAG-LDYEDN 196 (580)
Q Consensus 148 ---------------------~~~~~~~~~~~~~gv~~~~l~~---~~----~~~~~~~~--~~~~~y~~~~~-~~~~~~ 196 (580)
++.+.|+|...... .+.++. .. ..++.+.+ | ..+|++.+. .....|
T Consensus 192 ~~~~~v~av~yd~pi~Gy~~~~~n~lrlW~a~~~~--~f~l~~fn~gdy~~a~~~~~~~~~It-~~LYp~D~~~~Gk~lR 268 (796)
T 1l5w_A 192 EPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAH--PFDLTKFNDGDFLRAEQQGINAEKLT-KVLYPNDNAFEGKKLR 268 (796)
T ss_dssp ECSEEEEEEEEEEEEECSSSCCEEEEEEEEEECSS--CCCHHHHHTTCTTGGGHHHHHHHGGG-TCSSCCCSSHHHHHHH
T ss_pred cCCceEEEEEecccccCCCCCceEEEEEEEeccCc--ccChhhcCCccHhhhhhchHhHhhhh-hcCcCCCCccchHHHH
Confidence 33444555444332 111111 01 11122222 3 378986220 114468
Q ss_pred HHHHHHHHHHHHHH-hHHhccCCCCCCCCCCCCceEEEecCCccchHHH-HHHHhhhccCcc-------ccceE-EEcCC
Q 008028 197 QLRFSLLCQAALEA-PRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPC-YLKFMYQSKGIH-------KNAKR-LCRPR 266 (580)
Q Consensus 197 ~~~~~~l~~~~~~~-~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~l~~-~l~~~~~~~gi~-------~~~~~-~~l~~ 266 (580)
+.|..+|+.++++. ++.+......|-.=+ .|+ |||+||||+++++. +++.++...|+. ...++ ||.|.
T Consensus 269 L~Qe~ff~~a~lq~ilr~~~~~~~~~~~l~-~p~-viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HT 346 (796)
T 1l5w_A 269 LMQQYFQCACSVADILRRHHLAGRKLHELA-DYE-VIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHT 346 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCGGGHH-HHE-EEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhcC-Ccc-EEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecC
Confidence 89999999999986 654421100000000 377 99999999999998 476665433332 23334 77662
Q ss_pred CCCC------------------------------------------------CCCccchHHHHHHhcCceeEeeCHHHHH
Q 008028 267 YDKP------------------------------------------------VKGRKINWMKAGILESDRVLTVSPHYAK 298 (580)
Q Consensus 267 ~~~~------------------------------------------------~~~~~~~~~~~~~~~ad~vi~vS~~~~~ 298 (580)
..+. .....++|++.++..|+.|++||+.+++
T Consensus 347 l~~egle~wp~~l~~~~lpr~~~ii~~I~~~f~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e 426 (796)
T 1l5w_A 347 LMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSD 426 (796)
T ss_dssp CSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHH
T ss_pred CcHhhhhcCCHHHHHHHhHHHHHHHhccCHHHHHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHH
Confidence 1110 1122678999999999999999999999
Q ss_pred HHHccccCCcchhhhhhcCCeeEecCCCCCCCc----CCCCccccccccC----------------chh------hhccc
Q 008028 299 ELISGEEKGVELDNIIRKTGISGIVNGMDVQEW----NPSTDRYINVNYD----------------ATT------VMNAK 352 (580)
Q Consensus 299 ~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~----~~~~~~~l~~~~~----------------~~~------~~~~~ 352 (580)
.++.....++ -+ +...++..|+||||...| +|..++.+...|+ .++ +...|
T Consensus 427 ~ik~~~f~~~--~~-~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K 503 (796)
T 1l5w_A 427 LVVKDLFPEY--HQ-LWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIK 503 (796)
T ss_dssp HHHHTTSHHH--HH-HCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHH
T ss_pred HHHhHHhhHH--HH-hCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9975322211 11 123489999999999999 6776666666665 333 44677
Q ss_pred hHHHHH----HHHHcCCCCCCCCcEEEEEccCccccCHHH-HHHHHhhhcC---------CCeEEEEEecCC------hh
Q 008028 353 PLVKEA----LQSQLGLPVDRNIPLIGFIGRLEEQKGSDI-LAQAIPKFMG---------GNVQIVVLGTGK------KP 412 (580)
Q Consensus 353 ~~~~~~----~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~-ll~a~~~l~~---------~~v~lii~G~g~------~~ 412 (580)
..+|.. +++++|++.+++.++++++.|+.++||.++ ++.++.++.+ .++||||+|++. +.
T Consensus 504 ~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~ 583 (796)
T 1l5w_A 504 QANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKN 583 (796)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHH
Confidence 778887 589999999999999999999999999999 8998887755 589999999986 45
Q ss_pred hHHHHHHHHH------HCCC--CeeEeccCChHHHHHHHhcCCEEEecCC--CCCccHHHHHHHHcCCceEEcCCCCcce
Q 008028 413 MEQQIEQLEI------ICPE--KARGITKFSTPLAHKIIAGADFMLVPSR--FEPCGLIQLHAMRYGTVPIVASTGGLFD 482 (580)
Q Consensus 413 ~~~~i~~l~~------~~~~--~v~~~~~~~~~~~~~~~~~aDi~l~ps~--~E~~g~~~lEAma~G~PvI~s~~gg~~e 482 (580)
+++.+.+++. ++++ +|+|+..|+..+++.++++||++++||+ +|+||++.|.+|.+|++.|.+-.|.+.|
T Consensus 584 iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvE 663 (796)
T 1l5w_A 584 IIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVE 663 (796)
T ss_dssp HHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHH
T ss_pred HHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeee
Confidence 5666888887 6777 8999999999999999999999999999 9999999999999999888666666666
Q ss_pred eEec--CceeEEEeecccccccCCcccHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Q 008028 483 TVKE--GITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYG-TPALKEMIQNCMALDLSWKEPARLWEKMLLSMEV 557 (580)
Q Consensus 483 ~i~~--~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~-~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~ 557 (580)
+.++ .+|||.||. ...++.++-.+.++..+.|. .+.+.++..+.+...|||... .+|.++|.+++.
T Consensus 664 i~e~vG~~NgF~FG~--------~~~ev~~l~~~~y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 664 IAEKVGEENIFIFGH--------TVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDK-HAFDQMLHSIGK 732 (796)
T ss_dssp HHHHHCGGGSEECSC--------CHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTTTTCT-TTTHHHHHHTST
T ss_pred hhhccCCCcEEEecC--------CHHHHHHHHHcccCHHHHhhcCHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHhc
Confidence 6543 479999841 11223333354444455442 347888888889999999886 889999998864
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=2.7e-35 Score=334.33 Aligned_cols=410 Identities=15% Similarity=0.136 Sum_probs=270.0
Q ss_pred ceEEEEeeccc---------CccccccHHHHhcc--------chHHHHhCCCeEE----EEEecCCccccccCCcEEEEE
Q 008028 85 MNLVFVGAEVA---------PWSKTGGLGDVLGG--------LPPALAARGHRVM----SVAPRYDQYKDAWDTSVLAEV 143 (580)
Q Consensus 85 mkI~~vs~e~~---------P~~~~GG~g~~~~~--------l~~aL~~~G~~V~----vi~~~y~~~~~~~~~~~~~~~ 143 (580)
|+|++||...+ |. +||...++.+ |+++|+++||+|+ |+|...+.-.. .+-....+.
T Consensus 279 ~~i~~is~hg~~~~~~~lG~~d--tGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g-~~y~~~~e~ 355 (816)
T 3s28_A 279 FNVVILSPHGYFAQDNVLGYPD--TGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVG-TTCGERLER 355 (816)
T ss_dssp CEEEEECCSSCCCSSSCTTSTT--CSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTT-SSTTSSEEE
T ss_pred eEEEEEcCCcccCccccCCCCC--CCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCC-CccCCccee
Confidence 89999999876 76 8999999985 6666778999886 89887542211 000000000
Q ss_pred EeCCeEEEEEEEEEEecCeeEEEecCccc---hhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCC
Q 008028 144 KVGDSIETVRFFHCYKRGVDRVFVDHPVF---LEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNK 220 (580)
Q Consensus 144 ~~~~~~~~~~~~~~~~~gv~~~~l~~~~~---~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~ 220 (580)
.. ..+|+.++.+..... ..+ |- ....++. .... +........++..+.
T Consensus 356 i~------------~~~gv~I~RvP~~~~~g~l~~-~l-~k~~L~~---------~L~~--F~~~~l~~il~~~~~---- 406 (816)
T 3s28_A 356 VY------------DSEYCDILRVPFRTEKGIVRK-WI-SRFEVWP---------YLET--YTEDAAVELSKELNG---- 406 (816)
T ss_dssp CT------------TCSSEEEEEECEEETTEEECS-CC-CTTTCGG---------GHHH--HHHHHHHHHHHHCSS----
T ss_pred ec------------CcCCeEEEEecCCCccccccc-cc-cHHHHHH---------HHHH--HHHHHHHHHHHhcCC----
Confidence 00 013555555432210 000 00 0011111 1111 121223333333321
Q ss_pred CCCCCCCCceEEEecCCccchHHHHHHHhhhccCccccceE-EEcCCCCCCC--CCc--------------cchHHHHHH
Q 008028 221 YFSGPYGEDVLFIGNDWHTALLPCYLKFMYQSKGIHKNAKR-LCRPRYDKPV--KGR--------------KINWMKAGI 283 (580)
Q Consensus 221 ~~~~~~~pDvVih~~~~~~~~l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~--~~~--------------~~~~~~~~~ 283 (580)
+|| |||+|.|.+++++..++...+. ++ ++.|...... ... .+..++.++
T Consensus 407 ------~PD-VIHsH~~~sglva~llar~~gv-------P~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l 472 (816)
T 3s28_A 407 ------KPD-LIIGNYSDGNLVASLLAHKLGV-------TQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAM 472 (816)
T ss_dssp ------CCS-EEEEEHHHHHHHHHHHHHHHTC-------CEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHH
T ss_pred ------CCe-EEEeCCchHHHHHHHHHHHcCC-------CEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 499 8999999988888887766533 33 6666432110 000 011134478
Q ss_pred hcCceeEeeCHHHHHHHHccc-cCCc----chhh---------hhhcCCeeEecCCCCCCCcCCCCccc--cccccCchh
Q 008028 284 LESDRVLTVSPHYAKELISGE-EKGV----ELDN---------IIRKTGISGIVNGMDVQEWNPSTDRY--INVNYDATT 347 (580)
Q Consensus 284 ~~ad~vi~vS~~~~~~l~~~~-~~g~----~~~~---------~~~~~~i~~I~NGvd~~~~~~~~~~~--l~~~~~~~~ 347 (580)
+.||.|+++|+..++.+.... .++. .... .+ ..++.+||||+|.+.|.|...+. +...++.-
T Consensus 473 ~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~-~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i- 550 (816)
T 3s28_A 473 NHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVF-DPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEI- 550 (816)
T ss_dssp HHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTT-CTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHH-
T ss_pred HhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccC-CCCEEEECCCcCHHHcCccchhhhhhhhccccc-
Confidence 899999999999888643210 0110 0000 11 12899999999999998865321 11100000
Q ss_pred hhccchHHHHHHHHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC--CCeEEEEEecCCh---------hhHHH
Q 008028 348 VMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG--GNVQIVVLGTGKK---------PMEQQ 416 (580)
Q Consensus 348 ~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~--~~v~lii~G~g~~---------~~~~~ 416 (580)
.....++..+++.+|+..+++.++|+|+||+.+.||++.+++|+.++.+ ++++|+|+|+|.. ...+.
T Consensus 551 --~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~ 628 (816)
T 3s28_A 551 --EELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKK 628 (816)
T ss_dssp --HHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHH
T ss_pred --cccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHH
Confidence 0000011123455676555678999999999999999999999999865 6899999999872 25566
Q ss_pred HHHHHHHCC--CCeeEeccCC----hHHHHHHHh-cCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEecCce
Q 008028 417 IEQLEIICP--EKARGITKFS----TPLAHKIIA-GADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGIT 489 (580)
Q Consensus 417 i~~l~~~~~--~~v~~~~~~~----~~~~~~~~~-~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~~~ 489 (580)
++++..+++ ++|.+.+... .+.+..+++ ++|++++||.+|+||++++|||+||+|||+|+.||..|++.++.+
T Consensus 629 L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~ 708 (816)
T 3s28_A 629 MYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKS 708 (816)
T ss_dssp HHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTT
T ss_pred HHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCc
Confidence 777777655 5687876433 244555666 789999999999999999999999999999999999999999999
Q ss_pred eEEEeecccccccCCcccHHHHHHHHHHHH----HhcChhHHHHHHHHH---HHhcCCchHHHHHHHHHHHHHH
Q 008028 490 GFQMRSFHVECDRVDLADVAAIAKHVNRAV----ATYGTPALKEMIQNC---MALDLSWKEPARLWEKMLLSME 556 (580)
Q Consensus 490 G~~~~~~~~~~~~v~~~d~~~la~~l~~ll----~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~~~l~ 556 (580)
|+++ ++.|+++++++|.+++ .+ ++.+.+|++++ +.+.|||+.++++|.++|....
T Consensus 709 Gllv----------~p~D~e~LA~aI~~lL~~Ll~d--~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 709 GFHI----------DPYHGDQAADTLADFFTKCKED--PSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp BEEE----------CTTSHHHHHHHHHHHHHHHHHC--THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred EEEe----------CCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 9998 9999999999998877 55 67778888777 3478999999999999998764
No 12
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=6.7e-36 Score=312.55 Aligned_cols=358 Identities=15% Similarity=0.160 Sum_probs=252.8
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEEEEEEEecCeeE
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVRFFHCYKRGVDR 164 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (580)
|||++++..++| .||.+.++..++++|+++||+|+++++...... ..++++
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--------------------------~~~~~v 51 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC--------------------------PKAFEL 51 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC--------------------------CTTCEE
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC--------------------------CCCcEE
Confidence 899999998777 499999999999999999999999998532100 024555
Q ss_pred EEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccchHHH
Q 008028 165 VFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPC 244 (580)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~l~~ 244 (580)
+.+..+.+. +..+...+.....+.++.. +|| |+|+|.+..++...
T Consensus 52 ~~~~~~~~~----------------------~~~~~~~~~~~l~~~i~~~------------~~D-vv~~~~~~~~~~~~ 96 (374)
T 2iw1_A 52 IQVPVKSHT----------------------NHGRNAEYYAWVQNHLKEH------------PAD-RVVGFNKMPGLDVY 96 (374)
T ss_dssp EECCCCCSS----------------------HHHHHHHHHHHHHHHHHHS------------CCS-EEEESSCCTTCSEE
T ss_pred EEEccCccc----------------------chhhHHHHHHHHHHHHhcc------------CCC-EEEEecCCCCceee
Confidence 544322111 1112222333344444433 599 78888654432211
Q ss_pred HHHHhhhccCccccceE-EEcCCCCCCCCC--cc-chHHHHHHh--cCceeEeeCHHHHHHHHccccCCcchhhhhhcCC
Q 008028 245 YLKFMYQSKGIHKNAKR-LCRPRYDKPVKG--RK-INWMKAGIL--ESDRVLTVSPHYAKELISGEEKGVELDNIIRKTG 318 (580)
Q Consensus 245 ~l~~~~~~~gi~~~~~~-~~l~~~~~~~~~--~~-~~~~~~~~~--~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~ 318 (580)
+..... .... .+.++....... .. ..+.+..+. .+|.++++|+..++.+.+ .+|++.+ +
T Consensus 97 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~--~~~~~~~------~ 161 (374)
T 2iw1_A 97 FAADVC-------YAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQK--HYQTEPE------R 161 (374)
T ss_dssp ECCSCC-------HHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHH--HHCCCGG------G
T ss_pred eccccc-------cceeeeecccchhhhcHHHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHH--HhCCChh------h
Confidence 000000 0000 011111110000 01 112233333 699999999999999886 2355544 8
Q ss_pred eeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC
Q 008028 319 ISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG 398 (580)
Q Consensus 319 i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~ 398 (580)
+.+|+||+|.+.|.+... ...+..++++++++ ++.++|+|+||+.+.||++.+++++.++.+
T Consensus 162 ~~vi~ngv~~~~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~i~~~G~~~~~K~~~~li~a~~~l~~ 223 (374)
T 2iw1_A 162 FQILPPGIYPDRKYSEQI----------------PNSREIYRQKNGIK--EQQNLLLQVGSDFGRKGVDRSIEALASLPE 223 (374)
T ss_dssp EEECCCCCCGGGSGGGSC----------------TTHHHHHHHHTTCC--TTCEEEEEECSCTTTTTHHHHHHHHHTSCH
T ss_pred eEEecCCcCHHhcCcccc----------------hhHHHHHHHHhCCC--CCCeEEEEeccchhhcCHHHHHHHHHHhHh
Confidence 999999999988766432 11256788999986 345899999999999999999999999865
Q ss_pred ---CCeEEEEEecCChhhHHHHHHHHHHCC--CCeeEeccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceE
Q 008028 399 ---GNVQIVVLGTGKKPMEQQIEQLEIICP--EKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPI 473 (580)
Q Consensus 399 ---~~v~lii~G~g~~~~~~~i~~l~~~~~--~~v~~~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI 473 (580)
++++|+|+|+|.. +.++++..+++ +++.+.+. . +.+..+++.||++++||.+|++|++++|||+||+|+|
T Consensus 224 ~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~v~~~g~-~-~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi 298 (374)
T 2iw1_A 224 SLRHNTLLFVVGQDKP---RKFEALAEKLGVRSNVHFFSG-R-NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVL 298 (374)
T ss_dssp HHHHTEEEEEESSSCC---HHHHHHHHHHTCGGGEEEESC-C-SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEE
T ss_pred ccCCceEEEEEcCCCH---HHHHHHHHHcCCCCcEEECCC-c-ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEE
Confidence 4899999999863 34444444432 46777774 3 3456799999999999999999999999999999999
Q ss_pred EcCCCCcceeEecCceeEEEeecccccccCC-cccHHHHHHHHHHHHHhcChhHHHHHHHHH--HHhcCCchHHHHHHHH
Q 008028 474 VASTGGLFDTVKEGITGFQMRSFHVECDRVD-LADVAAIAKHVNRAVATYGTPALKEMIQNC--MALDLSWKEPARLWEK 550 (580)
Q Consensus 474 ~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~-~~d~~~la~~l~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~ 550 (580)
+++.||..+++.++.+|+++ + +.|+++++++|.+++++ ++.+.++++++ ..+.++|..+++++.+
T Consensus 299 ~~~~~~~~e~i~~~~~g~~~----------~~~~~~~~l~~~i~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (374)
T 2iw1_A 299 TTAVCGYAHYIADANCGTVI----------AEPFSQEQLNEVLRKALTQ--SPLRMAWAENARHYADTQDLYSLPEKAAD 366 (374)
T ss_dssp EETTSTTTHHHHHHTCEEEE----------CSSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred EecCCCchhhhccCCceEEe----------CCCCCHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999998 7 88999999999999996 77777887776 3357899999999999
Q ss_pred HHHHHH
Q 008028 551 MLLSME 556 (580)
Q Consensus 551 ~~~~l~ 556 (580)
+++..+
T Consensus 367 ~l~~~l 372 (374)
T 2iw1_A 367 IITGGL 372 (374)
T ss_dssp HHHCC-
T ss_pred HHHHhh
Confidence 988654
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=3.9e-35 Score=311.78 Aligned_cols=356 Identities=15% Similarity=0.142 Sum_probs=253.2
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEEEEEEEecCeeE
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVRFFHCYKRGVDR 164 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (580)
|||++|+.. +|. .||.+.++..|+++|+++ |+|++++........ ......
T Consensus 1 MkI~~v~~~-~p~--~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~-------------------------~~~~~~ 51 (413)
T 3oy2_A 1 MKLIIVGAH-SSV--PSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSV-------------------------HANIEE 51 (413)
T ss_dssp CEEEEEEEC-TTC--CSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCS-------------------------CSSSEE
T ss_pred CeEEEecCC-CCC--CCCHHHHHHHHHHHHHhc-CCeEEEeecCCCccc-------------------------cccccc
Confidence 899999986 454 699999999999999999 999999975320000 000010
Q ss_pred EEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccchHHH
Q 008028 165 VFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPC 244 (580)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~l~~ 244 (580)
+... ....+ ..+.+ .. +......+.++.. +|| |+|+|.|...+ +.
T Consensus 52 ~~~~---~~~~~------~~~~~-----~~-------~~~~~l~~~l~~~------------~~D-iv~~~~~~~~~-~~ 96 (413)
T 3oy2_A 52 FDAQ---TAEHV------RGLNE-----QG-------FYYSGLSEFIDVH------------KPD-IVMIYNDPIVI-GN 96 (413)
T ss_dssp EEHH---HHHHH------TTCCS-----TT-------CCHHHHHHHHHHH------------CCS-EEEEEECHHHH-HH
T ss_pred CCcc---ccccc------ccccc-----cc-------chHHHHHHHHHhc------------CCC-EEEEcchHHHH-HH
Confidence 0000 00000 01100 00 0111122333333 599 89998554433 33
Q ss_pred HHHHhhhccCccccceE-EEcCCCCCCCCCccchHHHHHHhcCc--eeEeeCHHHHHHHHccccCCcchhhhhhcCCeeE
Q 008028 245 YLKFMYQSKGIHKNAKR-LCRPRYDKPVKGRKINWMKAGILESD--RVLTVSPHYAKELISGEEKGVELDNIIRKTGISG 321 (580)
Q Consensus 245 ~l~~~~~~~gi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ad--~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~ 321 (580)
.+..... +.....+ ...+...... . ...+..++.+| .++++|+..++.+.+ .|.+ . ++.+
T Consensus 97 ~~~~~~~---~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~ii~~S~~~~~~~~~---~~~~-~------~~~v 159 (413)
T 3oy2_A 97 YLLAMGK---CSHRTKIVLYVDLVSKNI-R---ENLWWIFSHPKVVGVMAMSKCWISDICN---YGCK-V------PINI 159 (413)
T ss_dssp HHHHGGG---CCSCCEEEEEECCCSBSC-C---GGGGGGGGCTTEEEEEESSTHHHHHHHH---TTCC-S------CEEE
T ss_pred HHHHhcc---CCCCCceeeeccccchhh-H---HHHHHHHhccCCceEEEcCHHHHHHHHH---cCCC-C------ceEE
Confidence 3333322 2112333 3333222211 1 12466788988 999999999999987 4442 2 8999
Q ss_pred ecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC--C
Q 008028 322 IVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG--G 399 (580)
Q Consensus 322 I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~--~ 399 (580)
|+||+|.+.|. ..+++++++...+.++|+|+||+.++||++.+++|+.++.+ +
T Consensus 160 i~ngvd~~~~~-------------------------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~ 214 (413)
T 3oy2_A 160 VSHFVDTKTIY-------------------------DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYP 214 (413)
T ss_dssp CCCCCCCCCCT-------------------------THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCT
T ss_pred eCCCCCHHHHH-------------------------HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCC
Confidence 99999988771 13566777643467899999999999999999999999855 7
Q ss_pred CeEEEEEecCChh----hHHHHHHHHHHCC--CC-------eeEeccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHH
Q 008028 400 NVQIVVLGTGKKP----MEQQIEQLEIICP--EK-------ARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAM 466 (580)
Q Consensus 400 ~v~lii~G~g~~~----~~~~i~~l~~~~~--~~-------v~~~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAm 466 (580)
+++|+|+|+|... +++.++++..+++ ++ +.+.+..+.+.+..+|+.||++++||.+|+||++++|||
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAm 294 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGA 294 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHH
Confidence 8999999998742 4577777766544 33 555566677888889999999999999999999999999
Q ss_pred HcCCceEEcCCCCcceeEecCce---------------eE--EEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHH
Q 008028 467 RYGTVPIVASTGGLFDTVKEGIT---------------GF--QMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKE 529 (580)
Q Consensus 467 a~G~PvI~s~~gg~~e~i~~~~~---------------G~--~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~ 529 (580)
+||+|||+|+.||..|++.++.+ |+ ++ ++.|+++++++| +++++ ++.+.+
T Consensus 295 a~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~----------~~~d~~~la~~i-~l~~~--~~~~~~ 361 (413)
T 3oy2_A 295 VLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIE----------GIIDVDDLVEAF-TFFKD--EKNRKE 361 (413)
T ss_dssp TTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEE----------EECCHHHHHHHH-HHTTS--HHHHHH
T ss_pred HcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceee----------CCCCHHHHHHHH-HHhcC--HHHHHH
Confidence 99999999999999999998887 88 87 889999999999 99996 777777
Q ss_pred HHHHHH---HhcCCchHHHHHHHHHHHHHHhcC
Q 008028 530 MIQNCM---ALDLSWKEPARLWEKMLLSMEVAG 559 (580)
Q Consensus 530 ~~~~~~---~~~fs~~~~a~~~~~~~~~l~~~~ 559 (580)
|++++. .+.|||+.++++|+++|++++...
T Consensus 362 ~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 362 YGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 777763 368999999999999999998653
No 14
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=7e-35 Score=310.28 Aligned_cols=362 Identities=16% Similarity=0.141 Sum_probs=250.1
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEEEEEEEecC
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVRFFHCYKRG 161 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (580)
++.|||++++.. +. .||.+.++..|+++|.++||+|++++...+. ....
T Consensus 38 ~~~mkIl~v~~~--~~--~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~--~~~~------------------------- 86 (416)
T 2x6q_A 38 LKGRSFVHVNST--SF--GGGVAEILHSLVPLLRSIGIEARWFVIEGPT--EFFN------------------------- 86 (416)
T ss_dssp TTTCEEEEEESC--SS--SSTHHHHHHHHHHHHHHTTCEEEEEECCCCH--HHHH-------------------------
T ss_pred hhccEEEEEeCC--CC--CCCHHHHHHHHHHHHHhCCCeEEEEEccCCc--chhh-------------------------
Confidence 346999999986 33 6999999999999999999999999875321 0000
Q ss_pred eeEEEecCccchhhhccCCCCcccCCCCCCCCCchHH-HHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccc
Q 008028 162 VDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQL-RFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTA 240 (580)
Q Consensus 162 v~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~ 240 (580)
. ...+...+. +...+ .+..... .+..+.....+.++.. +|| |+|+|.+...
T Consensus 87 -----~-~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~------------~~D-vv~~~~~~~~ 138 (416)
T 2x6q_A 87 -----V-TKTFHNALQ---GNESL------KLTEEMKELYLNVNRENSKFIDLS------------SFD-YVLVHDPQPA 138 (416)
T ss_dssp -----H-HHHHHHHHT---TCCSC------CCCHHHHHHHHHHHHHHHHSSCGG------------GSS-EEEEESSTTG
T ss_pred -----h-hcccceeec---ccccc------cccHHHHHHHHHHHHHHHHHHhhc------------CCC-EEEEeccchh
Confidence 0 000000000 00000 0111111 1111112222222221 599 8999977654
Q ss_pred hHHHHHHHhhhccCccccceE-EEcCCCCCCCCCccchHHHHHHhcCceeE-eeCHHHHHHHHccccCCcchhhhhhcCC
Q 008028 241 LLPCYLKFMYQSKGIHKNAKR-LCRPRYDKPVKGRKINWMKAGILESDRVL-TVSPHYAKELISGEEKGVELDNIIRKTG 318 (580)
Q Consensus 241 ~l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ad~vi-~vS~~~~~~l~~~~~~g~~~~~~~~~~~ 318 (580)
.+...++ ...++ ++.|+...........+++..+..+|.++ ++|+...+. ++ ..+
T Consensus 139 ~~~~~~~---------~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~--------~~------~~~ 195 (416)
T 2x6q_A 139 ALIEFYE---------KKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQPE--------LD------RNK 195 (416)
T ss_dssp GGGGGSC---------CCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESSGGGSCTT--------SC------TTT
T ss_pred hHHHHHH---------hcCCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEechHHHHhh--------CC------ccc
Confidence 4422211 01345 77775443322233345566677888876 566543321 11 128
Q ss_pred eeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC
Q 008028 319 ISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG 398 (580)
Q Consensus 319 i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~ 398 (580)
+.+|+||+|...+.+... .+..+..++++++++ ++.++|+|+||+.++||++.+++|+.++.+
T Consensus 196 ~~vi~ngvd~~~~~~~~~---------------~~~~~~~~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~ 258 (416)
T 2x6q_A 196 AVIMPPSIDPLSEKNVEL---------------KQTEILRILERFDVD--PEKPIITQVSRFDPWKGIFDVIEIYRKVKE 258 (416)
T ss_dssp EEECCCCBCTTSTTTSCC---------------CHHHHHHHHHHTTCC--TTSCEEEEECCCCTTSCHHHHHHHHHHHHH
T ss_pred eEEeCCCCChhhhccccc---------------ChhhHHHHHHHhCCC--CCCcEEEEEeccccccCHHHHHHHHHHHHH
Confidence 999999999876654321 122356788899986 455899999999999999999999999865
Q ss_pred --CCeEEEEEecCCh---hhHHHHHHHHHHCC--CCeeEeccC---ChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHc
Q 008028 399 --GNVQIVVLGTGKK---PMEQQIEQLEIICP--EKARGITKF---STPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRY 468 (580)
Q Consensus 399 --~~v~lii~G~g~~---~~~~~i~~l~~~~~--~~v~~~~~~---~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~ 468 (580)
++++|+|+|+|+. ...+.++++..+++ +++.+.+.+ +......+++.||++++||.+|++|++++|||+|
T Consensus 259 ~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~ 338 (416)
T 2x6q_A 259 KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWK 338 (416)
T ss_dssp HCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHT
T ss_pred hCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHc
Confidence 6899999999862 34555666655443 468887744 3566778999999999999999999999999999
Q ss_pred CCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHHH---HHhcCCchHHH
Q 008028 469 GTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNC---MALDLSWKEPA 545 (580)
Q Consensus 469 G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a 545 (580)
|+|||+++.||..|++.++.+|+++ + |+++++++|.+++++ ++.+.+|++++ +.+.|||+.++
T Consensus 339 G~PvI~~~~~g~~e~i~~~~~g~l~----------~--d~~~la~~i~~ll~~--~~~~~~~~~~a~~~~~~~fs~~~~~ 404 (416)
T 2x6q_A 339 GKPVIGRAVGGIKFQIVDGETGFLV----------R--DANEAVEVVLYLLKH--PEVSKEMGAKAKERVRKNFIITKHM 404 (416)
T ss_dssp TCCEEEESCHHHHHHCCBTTTEEEE----------S--SHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred CCCEEEccCCCChhheecCCCeEEE----------C--CHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 9999999999999999999999997 5 899999999999997 77777777766 44689999999
Q ss_pred HHHHHHHHHHH
Q 008028 546 RLWEKMLLSME 556 (580)
Q Consensus 546 ~~~~~~~~~l~ 556 (580)
++|.++|++++
T Consensus 405 ~~~~~~~~~l~ 415 (416)
T 2x6q_A 405 ERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 15
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=100.00 E-value=1.8e-34 Score=319.61 Aligned_cols=436 Identities=17% Similarity=0.195 Sum_probs=295.9
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEEecCC--------------cccccc-------C---CcEEEEEEeCCeE------
Q 008028 100 TGGLGDVLGGLPPALAARGHRVMSVAPRYD--------------QYKDAW-------D---TSVLAEVKVGDSI------ 149 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~--------------~~~~~~-------~---~~~~~~~~~~~~~------ 149 (580)
.||+|++++.+.++++.+|.+.+.++.+|. ..++.| + ....+++.++++.
T Consensus 122 nGGLGrLAacfldS~AtL~~P~~G~Gi~Y~~G~F~Q~i~dG~Q~E~~d~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g 201 (824)
T 2gj4_A 122 NGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQG 201 (824)
T ss_dssp CSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEETTEEEEECCCTTTTCCTTCEECGGGCEEEEESCEEEECSSS
T ss_pred CCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeeEEeeCCEEEEcCccccccCCcccccCCCceEEEEeCCEEEecCCC
Confidence 799999999999999999999999999986 122233 1 0123333333322
Q ss_pred --------------------------EEEEEEEEEe-----------cCeeEEEecCccchhhhccCCCCcccCCCC-CC
Q 008028 150 --------------------------ETVRFFHCYK-----------RGVDRVFVDHPVFLEKVWGKTGSKIYGPKA-GL 191 (580)
Q Consensus 150 --------------------------~~~~~~~~~~-----------~gv~~~~l~~~~~~~~~~~~~~~~~y~~~~-~~ 191 (580)
.++|+|.... +++..++++... ...+ | ..+|++.+ ..
T Consensus 202 ~~w~~~~~v~av~yD~pi~Gy~~~~vn~lRlW~a~~~~~f~~~~fn~G~~~~a~~d~~~-~enI---t-~~LYp~D~~~~ 276 (824)
T 2gj4_A 202 AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNL-AENI---S-RVLYPNDNFFE 276 (824)
T ss_dssp EEEESCEEEEEEEEEEEEECSSSSCEEEEEEEEEECCC----------CHHHHHHTHHH-HHGG---G-SBCCCCSSCCC
T ss_pred ceecccceEEEeeccCCcCCCCCCceEEEEEEEeecCcccchhhccCccHHHHHhcccc-hhhc---C-cCCCCCCCccc
Confidence 2444443321 111111111111 0111 2 37898743 22
Q ss_pred CCCchHHHHHHHHHHHHHH-hHHh-----ccCC--CCCCCCCCCCceEEEecCCccchHHH-HHHHhhhccCccc-----
Q 008028 192 DYEDNQLRFSLLCQAALEA-PRIL-----NLNN--NKYFSGPYGEDVLFIGNDWHTALLPC-YLKFMYQSKGIHK----- 257 (580)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~-~r~l-----~~~~--~~~~~~~~~pDvVih~~~~~~~~l~~-~l~~~~~~~gi~~----- 257 (580)
....|+.|..+++.++++. +|.. +... ..-|+.--.|+ |||+||||+++++. +++.++...++-.
T Consensus 277 Gk~lRL~Qeyf~~sa~lqdilr~~~~~~~g~~~~~~~~~~~~~~p~-viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~ 355 (824)
T 2gj4_A 277 GKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKV-AIQLNDTHPSLAIPELMRVLVDLERLDWDKAWE 355 (824)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHC-----------CGGGHHHHE-EEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHH
T ss_pred hHhHhhhhhhhhhhhHHHHHHHHHHHhccccccccccchhhcCCCc-EEEccCCchHhHHHHHHHHHHHhcCCCHHHHHH
Confidence 3567889999999888874 3432 1100 00000111367 99999999999999 4766553333221
Q ss_pred --cceE-EEcCCCCC------------------------------------------------C-C--CCccchHHHHHH
Q 008028 258 --NAKR-LCRPRYDK------------------------------------------------P-V--KGRKINWMKAGI 283 (580)
Q Consensus 258 --~~~~-~~l~~~~~------------------------------------------------~-~--~~~~~~~~~~~~ 283 (580)
..++ ||.|...+ . . ....++|++.++
T Consensus 356 i~~~~~vfT~HTl~~eglE~wp~~l~~~lLPr~~~ii~~in~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~vnMa~lai 435 (824)
T 2gj4_A 356 VTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCI 435 (824)
T ss_dssp HHHHHEEEECCCCCGGGSCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHCSEECSSSCEEEHHHHHH
T ss_pred HhcCcEEEEeCCChHHHhhhchHHHHHHhCchHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhhhcCCCcccHHHHHH
Confidence 1123 66541100 0 0 234689999999
Q ss_pred hcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCCCCCCc----CCCCccccccc-----------------
Q 008028 284 LESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQEW----NPSTDRYINVN----------------- 342 (580)
Q Consensus 284 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~----~~~~~~~l~~~----------------- 342 (580)
..|+.|++||+-+++.+....+.++- + +...++..|+||||...| +|..++.|...
T Consensus 436 ~~S~~VNgVS~lH~e~ik~~~f~~~~--~-~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~ 512 (824)
T 2gj4_A 436 AGSHAVNGVARIHSEILKKTIFKDFY--E-LEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLS 512 (824)
T ss_dssp HTCSCEEESSHHHHHHHHHTTTHHHH--H-HCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGG
T ss_pred HhcCceeeEcHHHHHHHhhHHhHHHH--H-cChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHh
Confidence 99999999999999999753322211 1 123489999999999999 67655444433
Q ss_pred cCc-hhh----hccchHHHHH----HHHHcCCCCCCCCcEEEEEccCccccCHHHH-HHHHhhhc----CC-----CeEE
Q 008028 343 YDA-TTV----MNAKPLVKEA----LQSQLGLPVDRNIPLIGFIGRLEEQKGSDIL-AQAIPKFM----GG-----NVQI 403 (580)
Q Consensus 343 ~~~-~~~----~~~~~~~~~~----~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~l-l~a~~~l~----~~-----~v~l 403 (580)
|.. .++ ...|..+|.. ++++.|++.+++.++++++.||.++||.+++ +.++.++. .+ ++||
T Consensus 513 y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~ 592 (824)
T 2gj4_A 513 YVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTV 592 (824)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEE
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEE
Confidence 443 322 2456667776 8888999999999999999999999999998 88888874 22 6899
Q ss_pred EEEecCC------hhhHHHHHHHHHHC------CC--CeeEeccCChHHHHHHHhcCCEEEecCC--CCCccHHHHHHHH
Q 008028 404 VVLGTGK------KPMEQQIEQLEIIC------PE--KARGITKFSTPLAHKIIAGADFMLVPSR--FEPCGLIQLHAMR 467 (580)
Q Consensus 404 ii~G~g~------~~~~~~i~~l~~~~------~~--~v~~~~~~~~~~~~~~~~~aDi~l~ps~--~E~~g~~~lEAma 467 (580)
||+|++. +.+++.+.+++..+ ++ +|+|+..|+..+++.++++||++++||+ +|+||++.|.+|.
T Consensus 593 If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKaml 672 (824)
T 2gj4_A 593 MIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFML 672 (824)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHH
T ss_pred EEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHH
Confidence 9999986 45566688887754 56 8999999999999999999999999999 9999999999999
Q ss_pred cCCceEEcCCCCcceeEe--cCceeEEEeecccccccCCcccHHHHHHHH----HHHHHhcC-hhHHHHHHHHHHHhcCC
Q 008028 468 YGTVPIVASTGGLFDTVK--EGITGFQMRSFHVECDRVDLADVAAIAKHV----NRAVATYG-TPALKEMIQNCMALDLS 540 (580)
Q Consensus 468 ~G~PvI~s~~gg~~e~i~--~~~~G~~~~~~~~~~~~v~~~d~~~la~~l----~~ll~~~~-~~~~~~~~~~~~~~~fs 540 (580)
+|++.|++-.|.+.|+.. ..+|||+||.. .+++ ..+ ++..+.|. .++++++..+.+...||
T Consensus 673 NGaLtigtlDGanvEi~e~vG~~Ngf~FG~~-----------~~ev-~~l~~~~~~a~~~Y~~~~~l~~v~d~i~~g~fs 740 (824)
T 2gj4_A 673 NGALTIGTMDGANVEMAEEAGEENFFIFGMR-----------VEDV-DRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFS 740 (824)
T ss_dssp TTCEEEECSCTTHHHHHHHHCGGGSEECSCC-----------HHHH-HHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTC
T ss_pred cCceEEEEecCccchhhhccCCCCEEEeCCc-----------HHHH-HHHHHcCCCHHHHhcCCHHHHHHHHHHHhCCCC
Confidence 999888766666656543 35799999522 3333 333 22222222 46788888888888999
Q ss_pred chHHHHHHHHHHHHHHh
Q 008028 541 WKEPARLWEKMLLSMEV 557 (580)
Q Consensus 541 ~~~~a~~~~~~~~~l~~ 557 (580)
|... ..|.++|.+++.
T Consensus 741 ~~~~-~~y~~ly~~l~~ 756 (824)
T 2gj4_A 741 PKQP-DLFKDIVNMLMH 756 (824)
T ss_dssp TTST-TTTHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHc
Confidence 9887 789999998864
No 16
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=3e-34 Score=303.41 Aligned_cols=362 Identities=16% Similarity=0.169 Sum_probs=256.4
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEEEEEEEecC
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVRFFHCYKRG 161 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (580)
.+.|||++++..++|. .||.+.++..++++|+++||+|++++....... ...... ..+
T Consensus 18 ~~~MkIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~~~~~~------------------~~~ 75 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDV--PGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK--LPDYVV------------------SGG 75 (406)
T ss_dssp ---CEEEEECSSCTTS--CCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSC--CCTTEE------------------ECC
T ss_pred CCcceEEEEeccCCCC--CCcHHHHHHHHHHHHHHCCCeEEEEecCCcccc--CCcccc------------------cCC
Confidence 4569999999865554 699999999999999999999999998753220 000000 001
Q ss_pred eeEEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccch
Q 008028 162 VDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTAL 241 (580)
Q Consensus 162 v~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~ 241 (580)
.++.+....... .+. +. . .......+.++.. +|| |+|+|.+....
T Consensus 76 -~~~~~~~~~~~~--------~~~-------~~--~----~~~~~l~~~l~~~------------~~D-ii~~~~~~~~~ 120 (406)
T 2gek_A 76 -KAVPIPYNGSVA--------RLR-------FG--P----ATHRKVKKWIAEG------------DFD-VLHIHEPNAPS 120 (406)
T ss_dssp -CCC---------------------------CC--H----HHHHHHHHHHHHH------------CCS-EEEEECCCSSS
T ss_pred -cEEeccccCCcc--------ccc-------cc--H----HHHHHHHHHHHhc------------CCC-EEEECCccchH
Confidence 111110000000 000 00 0 1122333444443 589 78888776665
Q ss_pred HHHHHHHhhhccCccccceE-EEcCCCCCCCC--CccchHHHHHHhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCC
Q 008028 242 LPCYLKFMYQSKGIHKNAKR-LCRPRYDKPVK--GRKINWMKAGILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTG 318 (580)
Q Consensus 242 l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~~--~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~ 318 (580)
++..+.... ..++ +++|+...... .....+++..++.+|.++++|+..++.+.+. .+ ..+
T Consensus 121 ~~~~~~~~~-------~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~--~~--------~~~ 183 (406)
T 2gek_A 121 LSMLALQAA-------EGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARRWQMEA--LG--------SDA 183 (406)
T ss_dssp HHHHHHHHE-------ESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHHHHHHHH--HS--------SCE
T ss_pred HHHHHHHhc-------CCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHh--cC--------CCc
Confidence 544444332 2344 66665432210 0111233467789999999999999988752 12 227
Q ss_pred eeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccC-ccccCHHHHHHHHhhhc
Q 008028 319 ISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRL-EEQKGSDILAQAIPKFM 397 (580)
Q Consensus 319 i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl-~~~Kg~~~ll~a~~~l~ 397 (580)
+ +|+||+|...+.+.... .+++ .+.++|+|+||+ .+.||++.+++++.++.
T Consensus 184 ~-vi~~~v~~~~~~~~~~~-------------------------~~~~--~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~ 235 (406)
T 2gek_A 184 V-EIPNGVDVASFADAPLL-------------------------DGYP--REGRTVLFLGRYDEPRKGMAVLLAALPKLV 235 (406)
T ss_dssp E-ECCCCBCHHHHHTCCCC-------------------------TTCS--CSSCEEEEESCTTSGGGCHHHHHHHHHHHH
T ss_pred E-EecCCCChhhcCCCchh-------------------------hhcc--CCCeEEEEEeeeCccccCHHHHHHHHHHHH
Confidence 8 99999998776554321 0121 245799999999 99999999999999997
Q ss_pred C--CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecCC-CCCccHHHHHHHHcCCceEE
Q 008028 398 G--GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSR-FEPCGLIQLHAMRYGTVPIV 474 (580)
Q Consensus 398 ~--~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps~-~E~~g~~~lEAma~G~PvI~ 474 (580)
+ ++++|+|+|.|.. +.++++..++.+++.+.+..+...+..+++.||++|+||. .|++|++++|||+||+|||+
T Consensus 236 ~~~~~~~l~i~G~~~~---~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~ 312 (406)
T 2gek_A 236 ARFPDVEILIVGRGDE---DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVA 312 (406)
T ss_dssp TTSTTCEEEEESCSCH---HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEE
T ss_pred HHCCCeEEEEEcCCcH---HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEE
Confidence 6 6899999999874 5666665555567888888888888889999999999996 99999999999999999999
Q ss_pred cCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHHH--HHhcCCchHHHHHHHHHH
Q 008028 475 ASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNC--MALDLSWKEPARLWEKML 552 (580)
Q Consensus 475 s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~ 552 (580)
++.||..|++.++.+|+++ ++.|+++++++|.+++++ ++.+.++++++ ..+.|||+.++++|.++|
T Consensus 313 ~~~~~~~e~i~~~~~g~~~----------~~~d~~~l~~~i~~l~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 380 (406)
T 2gek_A 313 SDLDAFRRVLADGDAGRLV----------PVDDADGMAAALIGILED--DQLRAGYVARASERVHRYDWSVVSAQIMRVY 380 (406)
T ss_dssp CCCHHHHHHHTTTTSSEEC----------CTTCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHGGGGBHHHHHHHHHHHH
T ss_pred ecCCcHHHHhcCCCceEEe----------CCCCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999997 899999999999999997 66677777665 224899999999999999
Q ss_pred HHHHhcCC
Q 008028 553 LSMEVAGS 560 (580)
Q Consensus 553 ~~l~~~~~ 560 (580)
++++....
T Consensus 381 ~~~~~~~~ 388 (406)
T 2gek_A 381 ETVSGAGI 388 (406)
T ss_dssp HHHCCTTC
T ss_pred HHHHhhcc
Confidence 99986543
No 17
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2e-34 Score=298.60 Aligned_cols=315 Identities=14% Similarity=0.109 Sum_probs=239.8
Q ss_pred CCCceEEEEeec--------c---cCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEE
Q 008028 82 QQGMNLVFVGAE--------V---APWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIE 150 (580)
Q Consensus 82 ~~~mkI~~vs~e--------~---~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~ 150 (580)
|+.|||++++.. + +|. ..||.+.++..++++|+++||+|+++++.......
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~-~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~----------------- 62 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQ-GYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR----------------- 62 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCS-SSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----------------
T ss_pred CCccEEEEEeccccccCcccccccCcc-cCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----------------
Confidence 346999999998 3 443 26999999999999999999999999986422110
Q ss_pred EEEEEEEEecCeeEEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCce
Q 008028 151 TVRFFHCYKRGVDRVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDV 230 (580)
Q Consensus 151 ~~~~~~~~~~gv~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDv 230 (580)
.++.++ ..+ .. ....+.++.. +||
T Consensus 63 ---------~~~~~~--~~~-------------------------~~-------~~l~~~l~~~------------~~D- 86 (342)
T 2iuy_A 63 ---------PGLTVV--PAG-------------------------EP-------EEIERWLRTA------------DVD- 86 (342)
T ss_dssp ---------TTEEEC--SCC-------------------------SH-------HHHHHHHHHC------------CCS-
T ss_pred ---------Ccceec--cCC-------------------------cH-------HHHHHHHHhc------------CCC-
Confidence 112211 000 00 0222333332 589
Q ss_pred EEEecCCccchHHHHHHHhhhccCccccceEEEcCCCCCCCCCccchHHHHHHhcCceeEeeCHHHHHHHHccccCCcch
Q 008028 231 LFIGNDWHTALLPCYLKFMYQSKGIHKNAKRLCRPRYDKPVKGRKINWMKAGILESDRVLTVSPHYAKELISGEEKGVEL 310 (580)
Q Consensus 231 Vih~~~~~~~~l~~~l~~~~~~~gi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~ 310 (580)
|+|+|.+...++. . ...... ++++|+...... .+|.++++|+..++.+.+
T Consensus 87 vi~~~~~~~~~~~---~------~~~~~p-v~~~h~~~~~~~------------~~d~ii~~S~~~~~~~~~-------- 136 (342)
T 2iuy_A 87 VVHDHSGGVIGPA---G------LPPGTA-FISSHHFTTRPV------------NPVGCTYSSRAQRAHCGG-------- 136 (342)
T ss_dssp EEEECSSSSSCST---T------CCTTCE-EEEEECSSSBCS------------CCTTEEESCHHHHHHTTC--------
T ss_pred EEEECCchhhHHH---H------hhcCCC-EEEecCCCCCcc------------cceEEEEcCHHHHHHHhc--------
Confidence 8999877655432 1 111223 555665433211 299999999999998864
Q ss_pred hhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccCccccCHHHHH
Q 008028 311 DNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILA 390 (580)
Q Consensus 311 ~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll 390 (580)
..++.+|+||+|.+.|.+.... . ++.++|+|+||+.+.||++.++
T Consensus 137 -----~~~~~vi~ngvd~~~~~~~~~~---------------------------~---~~~~~i~~vG~~~~~Kg~~~li 181 (342)
T 2iuy_A 137 -----GDDAPVIPIPVDPARYRSAADQ---------------------------V---AKEDFLLFMGRVSPHKGALEAA 181 (342)
T ss_dssp -----CTTSCBCCCCBCGGGSCCSTTC---------------------------C---CCCSCEEEESCCCGGGTHHHHH
T ss_pred -----CCceEEEcCCCChhhcCccccc---------------------------C---CCCCEEEEEeccccccCHHHHH
Confidence 1189999999998888665320 1 2446899999999999999999
Q ss_pred HHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecCC----------CCCccH
Q 008028 391 QAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSR----------FEPCGL 460 (580)
Q Consensus 391 ~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps~----------~E~~g~ 460 (580)
++++++ +++|+|+|+|+ ..+.++++..++++++.+.+..+...+..+++.||++++||. .|++|+
T Consensus 182 ~a~~~~---~~~l~i~G~g~--~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~ 256 (342)
T 2iuy_A 182 AFAHAC---GRRLVLAGPAW--EPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGAT 256 (342)
T ss_dssp HHHHHH---TCCEEEESCCC--CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCH
T ss_pred HHHHhc---CcEEEEEeCcc--cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccH
Confidence 999998 89999999987 456666666666678999888888888889999999999999 799999
Q ss_pred HHHHHHHcCCceEEcCCCCcceeEec--CceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHHHHHhc
Q 008028 461 IQLHAMRYGTVPIVASTGGLFDTVKE--GITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNCMALD 538 (580)
Q Consensus 461 ~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~~~~~~ 538 (580)
+++|||+||+|||+|+.||..|++.+ +.+|+++ ++ |+++++++|.++++ .+.+++.+.+.
T Consensus 257 ~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~----------~~-d~~~l~~~i~~l~~-------~~~~~~~~~~~ 318 (342)
T 2iuy_A 257 VVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGT----------DF-APDEARRTLAGLPA-------SDEVRRAAVRL 318 (342)
T ss_dssp HHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSS----------CC-CHHHHHHHHHTSCC-------HHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEc----------CC-CHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 99999999999999999999999999 8999987 88 99999999998876 33444456688
Q ss_pred CCchHHHHHHHHHHHHHHhc
Q 008028 539 LSWKEPARLWEKMLLSMEVA 558 (580)
Q Consensus 539 fs~~~~a~~~~~~~~~l~~~ 558 (580)
|||+.++++|.++|++++..
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 319 WGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp HBHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999864
No 18
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=3.1e-32 Score=296.46 Aligned_cols=417 Identities=15% Similarity=0.143 Sum_probs=273.4
Q ss_pred EeecccCccccccHHHHhccchHHHHh-CCCeEEEEEecCCccccc------cCCcE--------EEEE--EeCCeEEEE
Q 008028 90 VGAEVAPWSKTGGLGDVLGGLPPALAA-RGHRVMSVAPRYDQYKDA------WDTSV--------LAEV--KVGDSIETV 152 (580)
Q Consensus 90 vs~e~~P~~~~GG~g~~~~~l~~aL~~-~G~~V~vi~~~y~~~~~~------~~~~~--------~~~~--~~~~~~~~~ 152 (580)
++.|+.. |.||+-.++..-++.+.+ .|-+.+.|+|........ ..+.. .... .+..+-..+
T Consensus 33 ~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 110 (725)
T 3nb0_A 33 TATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHF 110 (725)
T ss_dssp EETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTTTCCE
T ss_pred eehhhhc--ccCCeEEEEecchhHHHHHhCCeEEEECCCCCCcCCcceeecCCCCchhhcchhHHHHHHHHHHHHCCCeE
Confidence 4555444 489999988887777664 588888998853211110 00000 0000 001112234
Q ss_pred EEEEEEecCeeEE-EecCccchh-------hhccCCC---CcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCC
Q 008028 153 RFFHCYKRGVDRV-FVDHPVFLE-------KVWGKTG---SKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKY 221 (580)
Q Consensus 153 ~~~~~~~~gv~~~-~l~~~~~~~-------~~~~~~~---~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~ 221 (580)
++-+..++|.+.+ ++|...++. .+|...| ..-|+ ..+...+|.+++.+.++.+..++.
T Consensus 111 ~~GrW~i~G~P~viL~d~~~~~~~~~~~~~~lw~~~~i~s~~~yg------~~dd~~~F~y~~~avl~~l~~~~~----- 179 (725)
T 3nb0_A 111 VYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDF------ETNDAILLGYTVAWFLGEVAHLDS----- 179 (725)
T ss_dssp EEEEESSTTCCEEEEECSGGGGGGHHHHHHHHHHHHCCCCCSSCH------HHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred EEEEEecCCCceEEEEeChHHHHHHHHHHHHHHHHhCcCCCCccc------chhHHHHHHHHHHHHHHHHHhcCC-----
Confidence 5556667777765 446655443 3554321 12222 334677899999999988876541
Q ss_pred CCCCCCCceEEEecCCccchHHHHHHHhhhccCccccceE-EEcCCCC-------CCCC--------------------C
Q 008028 222 FSGPYGEDVLFIGNDWHTALLPCYLKFMYQSKGIHKNAKR-LCRPRYD-------KPVK--------------------G 273 (580)
Q Consensus 222 ~~~~~~pDvVih~~~~~~~~l~~~l~~~~~~~gi~~~~~~-~~l~~~~-------~~~~--------------------~ 273 (580)
+.|| |+|+|||++++++.+++... ...++ +|+|... .... .
T Consensus 180 ----~~pd-IiH~HDW~tg~~~~~Lk~~~------~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~ 248 (725)
T 3nb0_A 180 ----QHAI-VAHFHEWLAGVALPLCRKRR------IDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIY 248 (725)
T ss_dssp ----SEEE-EEEEESGGGCTHHHHHHHTT------CSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCH
T ss_pred ----CCCc-EEEeCchhhhHHHHHHHHhC------CCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchh
Confidence 2478 99999999999999998652 24455 8877431 0100 0
Q ss_pred ccchHHHHHHhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccch
Q 008028 274 RKINWMKAGILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKP 353 (580)
Q Consensus 274 ~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~ 353 (580)
...++++.++..||+|+|||+.+++++... ++.+. -.+|+||+|...|+|... ....+.
T Consensus 249 ~~~~~EKaga~~AD~ITTVS~~yA~Ei~~L--l~r~~--------d~iIpNGID~~~f~p~~~-----------~~~~k~ 307 (725)
T 3nb0_A 249 HRYCIERAAAHSADVFTTVSQITAFEAEHL--LKRKP--------DGILPNGLNVIKFQAFHE-----------FQNLHA 307 (725)
T ss_dssp HHHHHHHHHHHHSSEEEESSHHHHHHHHHH--TSSCC--------SEECCCCBCCCCCSSTTH-----------HHHHHH
T ss_pred HHHHHHHHHHHhCCEEEECCHHHHHHHHHH--hcCCC--------CEEEcCCccccccCcchh-----------hHHHHH
Confidence 235678999999999999999999999862 23332 233999999999998521 113344
Q ss_pred HHHHHHHHHc------CCCCC-CCCcEEEEEccCc-cccCHHHHHHHHhhhcC---------CCeEEEEEecCChh----
Q 008028 354 LVKEALQSQL------GLPVD-RNIPLIGFIGRLE-EQKGSDILAQAIPKFMG---------GNVQIVVLGTGKKP---- 412 (580)
Q Consensus 354 ~~~~~~~~~~------glp~~-~~~~~i~f~Grl~-~~Kg~~~ll~a~~~l~~---------~~v~lii~G~g~~~---- 412 (580)
.+|..+++.+ +++.+ ++.++|+.+||++ .+||+|++++|+.+|.. .-+.|+|+..+...
T Consensus 308 ~aK~klq~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~ 387 (725)
T 3nb0_A 308 LKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVE 387 (725)
T ss_dssp HHHHHHHHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHH
T ss_pred HHHHHHHHHHHhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchh
Confidence 5566665544 44444 3456666789999 79999999999999863 13677777664211
Q ss_pred ----------hHH-------------------------------------------------------------------
Q 008028 413 ----------MEQ------------------------------------------------------------------- 415 (580)
Q Consensus 413 ----------~~~------------------------------------------------------------------- 415 (580)
+.+
T Consensus 388 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~ 467 (725)
T 3nb0_A 388 ALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNM 467 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEE
T ss_pred hhcchhHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeec
Confidence 000
Q ss_pred ----------HHHHHHHH----CCCCeeEeccCChH-------HHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEE
Q 008028 416 ----------QIEQLEII----CPEKARGITKFSTP-------LAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIV 474 (580)
Q Consensus 416 ----------~i~~l~~~----~~~~v~~~~~~~~~-------~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~ 474 (580)
.++++... .+.++++++.|... ....++++||++|+||++|+||++++|||+||+|+|+
T Consensus 468 ~~~~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~ 547 (725)
T 3nb0_A 468 VDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSIT 547 (725)
T ss_dssp TTGGGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEE
T ss_pred ccCCccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEE
Confidence 01111110 01136677666433 3567999999999999999999999999999999999
Q ss_pred cCCCCcceeEecC-------ceeEEEeecccccccCCcccHHHHHHHHHHHHHhc---ChhHHHHHHHHH--HHhcCCch
Q 008028 475 ASTGGLFDTVKEG-------ITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATY---GTPALKEMIQNC--MALDLSWK 542 (580)
Q Consensus 475 s~~gg~~e~i~~~-------~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~---~~~~~~~~~~~~--~~~~fs~~ 542 (580)
|+.||+.|++.++ .+|+++... ++.++++++++|.+++..+ ++..+..|++++ +++.|||+
T Consensus 548 s~~gG~~d~V~dg~~~~~~~~tG~lV~~r-------d~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe 620 (725)
T 3nb0_A 548 TNVSGFGSYMEDLIETNQAKDYGIYIVDR-------RFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWK 620 (725)
T ss_dssp ETTBHHHHHHHTTSCHHHHHHTTEEEECC-------SSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHH
T ss_pred eCCCChhhhhhccccccCCCCceEEEeCC-------CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999998875 479876100 2456777777777666532 244556666665 55789999
Q ss_pred HHHHHHHHHHHHHHhc
Q 008028 543 EPARLWEKMLLSMEVA 558 (580)
Q Consensus 543 ~~a~~~~~~~~~l~~~ 558 (580)
+++++|+++|+.++..
T Consensus 621 ~iA~~Yl~~Ye~aL~~ 636 (725)
T 3nb0_A 621 RMGLEYVKARQLALRR 636 (725)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998754
No 19
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.97 E-value=9.4e-31 Score=278.79 Aligned_cols=356 Identities=12% Similarity=0.070 Sum_probs=223.5
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEEEEEEEecC
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVRFFHCYKRG 161 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (580)
..+|||++|+..+.|....||.. .+.+++++|+++||+|+|+++.... +. ... . ...+
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~-~v~~la~~L~~~GheV~Vvt~~~~~--~~---~~~------~----------~~~~ 101 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGIS-TALKLFEQFDNKKFKKRIILTDATP--NP---KDL------Q----------SFKS 101 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHH-HHHHHHTTSCTTTCEEEEEESSCCC--CH---HHH------G----------GGTT
T ss_pred CCCceEEEEeCCCCccccccHHH-HHHHHHHHHHHcCCceEEEEecCCC--Ch---HHH------H----------hhhc
Confidence 45799999999988853247775 5789999999999999999986421 10 000 0 0000
Q ss_pred eeEEEecCcc-chhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccc
Q 008028 162 VDRVFVDHPV-FLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTA 240 (580)
Q Consensus 162 v~~~~l~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~ 240 (580)
.....+.... +.. .+.. +. .. ..+.+... ++| |+|+|.|.++
T Consensus 102 ~~~~~~~~~~~~~~--------~i~~------~~----------~~---~~~~~~~~---------~~D-vv~a~~~~~~ 144 (413)
T 2x0d_A 102 FKYVMPEEDKDFAL--------QIVP------FN----------DR---YNRTIPVA---------KHD-IFIATAWWTA 144 (413)
T ss_dssp SEECCTTCCCCCSE--------EEEE------CS----------CC---TTCCEEEC---------TTE-EEEECSHHHH
T ss_pred cceeeccCCccccc--------eeee------cc----------cc---ccccccCC---------CCC-EEEEehHHHH
Confidence 0000000000 000 0000 00 00 00000111 489 7899888766
Q ss_pred hHHHHHH-HhhhccCccccceEEEcCCCCCCCCCc--cchHHHHHHhcCc--eeEeeCHHHHHHHHccccCCcchhhhhh
Q 008028 241 LLPCYLK-FMYQSKGIHKNAKRLCRPRYDKPVKGR--KINWMKAGILESD--RVLTVSPHYAKELISGEEKGVELDNIIR 315 (580)
Q Consensus 241 ~l~~~l~-~~~~~~gi~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~ad--~vi~vS~~~~~~l~~~~~~g~~~~~~~~ 315 (580)
.....+. ......+......++..+++.+..... ...+.+..+..++ .++++|+.+++.+.+ .|++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~~~~~l~~---~g~~~~---- 217 (413)
T 2x0d_A 145 YAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSELLKQYFNN---KGYNFT---- 217 (413)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEEESHHHHHHHHH---HTCCCS----
T ss_pred HHHHHhhhhhhhhcccccCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEEcCHHHHHHHHH---cCCCCC----
Confidence 5554431 111111211222223333332211111 1112334455555 589999999999986 344322
Q ss_pred cCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccC-ccccCHHHHHHHHh
Q 008028 316 KTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRL-EEQKGSDILAQAIP 394 (580)
Q Consensus 316 ~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl-~~~Kg~~~ll~a~~ 394 (580)
++.+++||+|.+.|.+... + .++.+.|+|+||+ .+.||++.+++|+.
T Consensus 218 --~~~~i~~g~d~~~~~~~~~---------------------------~---~~~~~~il~~gr~~~~~Kg~~~li~A~~ 265 (413)
T 2x0d_A 218 --DEYFFQPKINTTLKNYIND---------------------------K---RQKEKIILVYGRPSVKRNAFTLIVEALK 265 (413)
T ss_dssp --EEEEECCCCCHHHHTTTTS---------------------------C---CCCCSEEEEEECTTCGGGCHHHHHHHHH
T ss_pred --ceEEeCCCcCchhhccccc---------------------------c---cCCCCEEEEEecCchhccCHHHHHHHHH
Confidence 6889999998765433210 0 1244689999996 68999999999999
Q ss_pred hhcC--C---CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcC
Q 008028 395 KFMG--G---NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYG 469 (580)
Q Consensus 395 ~l~~--~---~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G 469 (580)
++.+ + +++|+|+|+|.... ++ ...+++.+.+..+.+.+..+|+.||++++||..|++|++++||||||
T Consensus 266 ~l~~~~~~~~~~~l~ivG~~~~~~-----~l--~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G 338 (413)
T 2x0d_A 266 IFVQKYDRSNEWKIISVGEKHKDI-----AL--GKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFG 338 (413)
T ss_dssp HHHHHCTTGGGCEEEEEESCCCCE-----EE--ETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTT
T ss_pred HHHHhCCCCCceEEEEEcCCchhh-----hc--CCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCC
Confidence 9854 3 38999999986420 11 12346888888888888899999999999999999999999999999
Q ss_pred CceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCchHHHHHHH
Q 008028 470 TVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNCMALDLSWKEPARLWE 549 (580)
Q Consensus 470 ~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~ 549 (580)
+|||++ .+|..|++.++.+|+++ ++.|+++++++|.+++++ ++.+.+ ......+.|||+..+++ .
T Consensus 339 ~PVV~~-~~g~~e~v~~~~~G~lv----------~~~d~~~la~ai~~ll~~--~~~~~~-~~~~~~~~~~W~~~~~~-~ 403 (413)
T 2x0d_A 339 LRVITN-KYENKDLSNWHSNIVSL----------EQLNPENIAETLVELCMS--FNNRDV-DKKESSNMMFYINEFNE-F 403 (413)
T ss_dssp CEEEEE-CBTTBCGGGTBTTEEEE----------SSCSHHHHHHHHHHHHHH--TC--------CCBSCGGGCCCC----
T ss_pred CcEEEe-CCCcchhhhcCCCEEEe----------CCCCHHHHHHHHHHHHcC--HHHHHH-hHHHHHHhCCHHHHHHH-H
Confidence 999995 56778999999999987 999999999999999997 444333 11123358999999887 6
Q ss_pred HHHHHHHh
Q 008028 550 KMLLSMEV 557 (580)
Q Consensus 550 ~~~~~l~~ 557 (580)
+.|+++..
T Consensus 404 ~~~~~l~~ 411 (413)
T 2x0d_A 404 SFIKEIEE 411 (413)
T ss_dssp TTHHHHHT
T ss_pred HHHHHHHh
Confidence 67776653
No 20
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.95 E-value=1.3e-27 Score=254.23 Aligned_cols=203 Identities=13% Similarity=0.059 Sum_probs=162.9
Q ss_pred hHHHHHHhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHH
Q 008028 277 NWMKAGILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVK 356 (580)
Q Consensus 277 ~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 356 (580)
.+++..++.+|.++++|+..++.+.+ .| ++.+|+||+|.+.|.+....
T Consensus 170 ~~~~~~~~~ad~vi~~S~~~~~~~~~---~~----------~i~vipngvd~~~f~~~~~~------------------- 217 (406)
T 2hy7_A 170 REFDRVAPTLDVIALVSPAMAAEVVS---RD----------NVFHVGHGVDHNLDQLGDPS------------------- 217 (406)
T ss_dssp HHHHHHGGGCSEEEESCGGGGGGCSC---ST----------TEEECCCCBCTTHHHHHCSC-------------------
T ss_pred HHHHHHHHhCCEEEEcCHHHHHHHHh---cC----------CEEEEcCCcChHhcCccccc-------------------
Confidence 45677889999999999998888764 22 78999999998877543210
Q ss_pred HHHHHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCCh
Q 008028 357 EALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFST 436 (580)
Q Consensus 357 ~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~ 436 (580)
+ ..+.++|+|+||+.+.||+ ++++.+. .++++|+|+|+|+ ++++ ...++|.+.+..+.
T Consensus 218 ---------~-~~~~~~i~~vGrl~~~Kg~---~~~l~~~-~~~~~l~ivG~g~------~~~~--~l~~~V~f~G~~~~ 275 (406)
T 2hy7_A 218 ---------P-YAEGIHAVAVGSMLFDPEF---FVVASKA-FPQVTFHVIGSGM------GRHP--GYGDNVIVYGEMKH 275 (406)
T ss_dssp ---------S-CCSSEEEEEECCTTBCHHH---HHHHHHH-CTTEEEEEESCSS------CCCT--TCCTTEEEECCCCH
T ss_pred ---------c-cCCCcEEEEEeccccccCH---HHHHHHh-CCCeEEEEEeCch------HHhc--CCCCCEEEcCCCCH
Confidence 1 1233799999999999998 4444332 3789999999886 1111 23457999888888
Q ss_pred HHHHHHHhcCCEEEecCCCCCccHHHHHHH-------HcCCceEEcCCCCcceeEecCceeEE-EeecccccccCCcccH
Q 008028 437 PLAHKIIAGADFMLVPSRFEPCGLIQLHAM-------RYGTVPIVASTGGLFDTVKEGITGFQ-MRSFHVECDRVDLADV 508 (580)
Q Consensus 437 ~~~~~~~~~aDi~l~ps~~E~~g~~~lEAm-------a~G~PvI~s~~gg~~e~i~~~~~G~~-~~~~~~~~~~v~~~d~ 508 (580)
+.+..+|+.||++++||+.|++|++++||| +||+|||+|+. +.++.+|++ + +++|+
T Consensus 276 ~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v----------~~~d~ 339 (406)
T 2hy7_A 276 AQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGY----------TPGNA 339 (406)
T ss_dssp HHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEE----------CTTCH
T ss_pred HHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEe----------CCCCH
Confidence 888889999999999999999999999999 99999999987 567789998 8 99999
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCchHHHHHHHHH--HHHHHhc
Q 008028 509 AAIAKHVNRAVATYGTPALKEMIQNCMALDLSWKEPARLWEKM--LLSMEVA 558 (580)
Q Consensus 509 ~~la~~l~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~--~~~l~~~ 558 (580)
++++++|.+++++. + + ...+.|||+.++++++++ |.++...
T Consensus 340 ~~la~ai~~ll~~~--~------~-~~~~~~sw~~~a~~~~~~~~y~~~~~~ 382 (406)
T 2hy7_A 340 DSVIAAITQALEAP--R------V-RYRQCLNWSDTTDRVLDPRAYPETRLY 382 (406)
T ss_dssp HHHHHHHHHHHHCC--C------C-CCSCCCBHHHHHHHHHCGGGSGGGBSS
T ss_pred HHHHHHHHHHHhCc--c------h-hhhhcCCHHHHHHHHHHhhcccccCcC
Confidence 99999999999973 3 1 235789999999999999 8877643
No 21
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.94 E-value=2.6e-26 Score=239.38 Aligned_cols=338 Identities=15% Similarity=0.042 Sum_probs=220.0
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccccccCCcEEEEEEeCCeEEEEEEEEEEecCee
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKDAWDTSVLAEVKVGDSIETVRFFHCYKRGVD 163 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (580)
.|||++++.. .||....+..|+++|.++||+|.++++......... ...|++
T Consensus 6 ~mkIl~~~~~------~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~----------------------~~~g~~ 57 (364)
T 1f0k_A 6 GKRLMVMAGG------TGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLV----------------------PKHGIE 57 (364)
T ss_dssp -CEEEEECCS------SHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHG----------------------GGGTCE
T ss_pred CcEEEEEeCC------CccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhc----------------------cccCCc
Confidence 3899999832 588888999999999999999999998642111100 001344
Q ss_pred EEEecCccchhhhccCCCCcccCCCCCCCCCchHHHHHHHHHHHHHHhHHhccCCCCCCCCCCCCceEEEecCCccchHH
Q 008028 164 RVFVDHPVFLEKVWGKTGSKIYGPKAGLDYEDNQLRFSLLCQAALEAPRILNLNNNKYFSGPYGEDVLFIGNDWHTALLP 243 (580)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~l~ 243 (580)
++.+..+.+... .... ................+.++.. +|| |+|+|.....+.+
T Consensus 58 ~~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~l~~~l~~~------------~pD-vv~~~~~~~~~~~ 111 (364)
T 1f0k_A 58 IDFIRISGLRGK-------GIKA------LIAAPLRIFNAWRQARAIMKAY------------KPD-VVLGMGGYVSGPG 111 (364)
T ss_dssp EEECCCCCCTTC-------CHHH------HHTCHHHHHHHHHHHHHHHHHH------------CCS-EEEECSSTTHHHH
T ss_pred eEEecCCccCcC-------ccHH------HHHHHHHHHHHHHHHHHHHHhc------------CCC-EEEEeCCcCchHH
Confidence 443332211000 0000 0000111111223333444443 599 7888755444443
Q ss_pred HHHHHhhhccCccccceE-EEcCCCCCCCCCccchHHHHHHhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEe
Q 008028 244 CYLKFMYQSKGIHKNAKR-LCRPRYDKPVKGRKINWMKAGILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGI 322 (580)
Q Consensus 244 ~~l~~~~~~~gi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I 322 (580)
..+....+ .++ ++.|+... + ...+...+.+|.+++.|+.. ++ ++.+|
T Consensus 112 ~~~~~~~~-------~p~v~~~~~~~~---~---~~~~~~~~~~d~v~~~~~~~-----------~~--------~~~~i 159 (364)
T 1f0k_A 112 GLAAWSLG-------IPVVLHEQNGIA---G---LTNKWLAKIATKVMQAFPGA-----------FP--------NAEVV 159 (364)
T ss_dssp HHHHHHTT-------CCEEEEECSSSC---C---HHHHHHTTTCSEEEESSTTS-----------SS--------SCEEC
T ss_pred HHHHHHcC-------CCEEEEecCCCC---c---HHHHHHHHhCCEEEecChhh-----------cC--------CceEe
Confidence 34433322 233 44443221 1 12345567899999988653 11 57899
Q ss_pred cCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCc-EEEEEccCccccCHHHHHHHHhhhcCCCe
Q 008028 323 VNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIP-LIGFIGRLEEQKGSDILAQAIPKFMGGNV 401 (580)
Q Consensus 323 ~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~-~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v 401 (580)
+||++...+.+.. .+++++++ ++.+ ++++.|++.+.|+.+.+++++.++.+ ++
T Consensus 160 ~n~v~~~~~~~~~-----------------------~~~~~~~~--~~~~~il~~~g~~~~~k~~~~li~a~~~l~~-~~ 213 (364)
T 1f0k_A 160 GNPVRTDVLALPL-----------------------PQQRLAGR--EGPVRVLVVGGSQGARILNQTMPQVAAKLGD-SV 213 (364)
T ss_dssp CCCCCHHHHTSCC-----------------------HHHHHTTC--CSSEEEEEECTTTCCHHHHHHHHHHHHHHGG-GE
T ss_pred CCccchhhcccch-----------------------hhhhcccC--CCCcEEEEEcCchHhHHHHHHHHHHHHHhcC-Cc
Confidence 9999976654421 12445554 2334 45566799999999999999999865 78
Q ss_pred E-EEEEecCChhhHHHHHHHHHHCC-CCeeEeccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCC
Q 008028 402 Q-IVVLGTGKKPMEQQIEQLEIICP-EKARGITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG 479 (580)
Q Consensus 402 ~-lii~G~g~~~~~~~i~~l~~~~~-~~v~~~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg 479 (580)
+ ++++|+|. .+.++++..+++ .++.+.+.. +....+|+.||++++||. |++++|||++|+|+|+++.+|
T Consensus 214 ~~l~i~G~~~---~~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g 284 (364)
T 1f0k_A 214 TIWHQSGKGS---QQSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQH 284 (364)
T ss_dssp EEEEECCTTC---HHHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCC
T ss_pred EEEEEcCCch---HHHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCC
Confidence 8 56788887 245555555554 367777655 445569999999999983 999999999999999999998
Q ss_pred cce-------eEecCceeEEEeecccccccCCccc--HHHHHHHHHHHHHhcChhHHHHHHHHHH--HhcCCchHHHHHH
Q 008028 480 LFD-------TVKEGITGFQMRSFHVECDRVDLAD--VAAIAKHVNRAVATYGTPALKEMIQNCM--ALDLSWKEPARLW 548 (580)
Q Consensus 480 ~~e-------~i~~~~~G~~~~~~~~~~~~v~~~d--~~~la~~l~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~ 548 (580)
..+ .+.+.+.|+++ ++.| +++++++|.++ + ++.+.+|++++. .+.|+|++++++|
T Consensus 285 ~~~~q~~~~~~~~~~g~g~~~----------~~~d~~~~~la~~i~~l--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (364)
T 1f0k_A 285 KDRQQYWNALPLEKAGAAKII----------EQPQLSVDAVANTLAGW--S--RETLLTMAERARAASIPDATERVANEV 350 (364)
T ss_dssp TTCHHHHHHHHHHHTTSEEEC----------CGGGCCHHHHHHHHHTC--C--HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred CchhHHHHHHHHHhCCcEEEe----------ccccCCHHHHHHHHHhc--C--HHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 643 34444569987 8888 99999999988 4 777778877763 3589999999999
Q ss_pred HHHHHHHH
Q 008028 549 EKMLLSME 556 (580)
Q Consensus 549 ~~~~~~l~ 556 (580)
+++|++..
T Consensus 351 ~~~y~~~~ 358 (364)
T 1f0k_A 351 SRVARALE 358 (364)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHHH
Confidence 99998653
No 22
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.94 E-value=8.1e-25 Score=236.53 Aligned_cols=289 Identities=12% Similarity=0.061 Sum_probs=204.2
Q ss_pred CceEEEecCCccchHHHHHHHhhhccCccccceE-EEcCCCCCCC-CCccchH---HHHHHhcCceeEeeCHHHHHHHHc
Q 008028 228 EDVLFIGNDWHTALLPCYLKFMYQSKGIHKNAKR-LCRPRYDKPV-KGRKINW---MKAGILESDRVLTVSPHYAKELIS 302 (580)
Q Consensus 228 pDvVih~~~~~~~~l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~-~~~~~~~---~~~~~~~ad~vi~vS~~~~~~l~~ 302 (580)
+| |||+||+|..+++.+++... .+.++ +++|...+.. ..+.+.+ +...+..+|.+.+.+..+.+.+.+
T Consensus 124 ~D-iV~vHdyhl~~l~~~lr~~~------~~~~i~~~~H~pfp~~~~~~~lp~~~~il~~ll~~d~i~f~~~~~~~~f~~ 196 (482)
T 1uqt_A 124 DD-IIWIHDYHLLPFAHELRKRG------VNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLD 196 (482)
T ss_dssp TC-EEEEESGGGTTHHHHHHHTT------CCSCEEEECCSCCCCHHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHH
T ss_pred CC-EEEEECchHHHHHHHHHHhC------CCCcEEEEEcCCCCCHHHHhhCccHHHHHHhhhccCeEEEECHHHHHHHHH
Confidence 58 99999999999998887642 23456 7777532211 0111222 233455789999998887777653
Q ss_pred cccC--Ccc------hhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEE
Q 008028 303 GEEK--GVE------LDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLI 374 (580)
Q Consensus 303 ~~~~--g~~------~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i 374 (580)
.... +.+ .+..-+..++.+||||||.+.|.+.... ..... ...++++++ +.++|
T Consensus 197 ~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~------------~~~~~-~~~lr~~~~-----~~~vi 258 (482)
T 1uqt_A 197 CLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAG------------PLPPK-LAQLKAELK-----NVQNI 258 (482)
T ss_dssp HHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHS------------CCCHH-HHHHHHHTT-----TCEEE
T ss_pred HHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcC------------cchHH-HHHHHHHhC-----CCEEE
Confidence 2110 100 0000112479999999998877542110 00011 345777775 45799
Q ss_pred EEEccCccccCHHHHHHHHhhhcC--C----CeEEEEEecCC-------hhhHHHHHHHHHH----CC----CCeeEe-c
Q 008028 375 GFIGRLEEQKGSDILAQAIPKFMG--G----NVQIVVLGTGK-------KPMEQQIEQLEII----CP----EKARGI-T 432 (580)
Q Consensus 375 ~f~Grl~~~Kg~~~ll~a~~~l~~--~----~v~lii~G~g~-------~~~~~~i~~l~~~----~~----~~v~~~-~ 432 (580)
+++||+++.||++.+|+|++++.+ + +++|+++|.+. ..++++++++..+ ++ ..++++ +
T Consensus 259 l~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g 338 (482)
T 1uqt_A 259 FSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQ 338 (482)
T ss_dssp EEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCC
Confidence 999999999999999999998854 2 58899999632 1355666666443 22 125544 5
Q ss_pred cCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCC-----ceEEcCCCCcceeEecCceeEEEeecccccccCCccc
Q 008028 433 KFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGT-----VPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLAD 507 (580)
Q Consensus 433 ~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~-----PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d 507 (580)
..+.+.+..+|+.||++++||..|+||++.+|||+||+ |+|+|+.+|..+.+ + +|+++ +|.|
T Consensus 339 ~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l-~--~g~lv----------~p~d 405 (482)
T 1uqt_A 339 HFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-T--SALIV----------NPYD 405 (482)
T ss_dssp CCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC-T--TSEEE----------CTTC
T ss_pred CCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh-C--CeEEE----------CCCC
Confidence 55778888899999999999999999999999999997 89999988888877 2 78887 9999
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHH--HhcCCchHHHHHHHHHHHHH
Q 008028 508 VAAIAKHVNRAVATYGTPALKEMIQNCM--ALDLSWKEPARLWEKMLLSM 555 (580)
Q Consensus 508 ~~~la~~l~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~~~~~l 555 (580)
++++|++|.+++++ .++++.+++++.. .+.|||+..+++|++.|+++
T Consensus 406 ~~~lA~ai~~lL~~-~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 406 RDEVAAALDRALTM-SLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99999999999986 2345556655542 35699999999999999876
No 23
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.93 E-value=7.1e-25 Score=229.20 Aligned_cols=224 Identities=15% Similarity=0.058 Sum_probs=167.8
Q ss_pred HHHHHH-hcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCC-CCCCCcCCCCccccccccCchhhhccchHH
Q 008028 278 WMKAGI-LESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNG-MDVQEWNPSTDRYINVNYDATTVMNAKPLV 355 (580)
Q Consensus 278 ~~~~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NG-vd~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 355 (580)
+.+..+ +.+|.++++|+..++.+.+ .|++.+ ++.+|+|| +|...+.+....
T Consensus 142 ~~~~~~~~~~d~ii~~s~~~~~~~~~---~g~~~~------~i~vi~n~~~d~~~~~~~~~~------------------ 194 (375)
T 3beo_A 142 MNRQLTGVMADLHFSPTAKSATNLQK---ENKDES------RIFITGNTAIDALKTTVKETY------------------ 194 (375)
T ss_dssp HHHHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHCCSSC------------------
T ss_pred hhhhHHhhhhheeeCCCHHHHHHHHH---cCCCcc------cEEEECChhHhhhhhhhhhhh------------------
Confidence 344444 3599999999999999876 566655 89999999 786555432100
Q ss_pred HHHHHHHcCCCCCCCCcEEEEEccCccc-cCHHHHHHHHhhhcC--CCeEEEEEecCC-hhhHHHHHHHHHHCCCCeeEe
Q 008028 356 KEALQSQLGLPVDRNIPLIGFIGRLEEQ-KGSDILAQAIPKFMG--GNVQIVVLGTGK-KPMEQQIEQLEIICPEKARGI 431 (580)
Q Consensus 356 ~~~~~~~~glp~~~~~~~i~f~Grl~~~-Kg~~~ll~a~~~l~~--~~v~lii~G~g~-~~~~~~i~~l~~~~~~~v~~~ 431 (580)
+..+++++ + ++.++++++||+.+. ||++.+++|+.++.+ +++++++ |.|+ ..+.+.++++... .+++.+.
T Consensus 195 ~~~~~~~~--~--~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~-~~~v~~~ 268 (375)
T 3beo_A 195 SHPVLEKL--G--NNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNPVVRETANDILGD-YGRIHLI 268 (375)
T ss_dssp CCHHHHTT--T--TSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHTT-CTTEEEE
T ss_pred hHHHHHhc--c--CCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhhc-cCCEEEe
Confidence 11233333 2 234578899999876 999999999999865 5888665 5554 3456666665322 2468887
Q ss_pred ccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCC-CCcceeEecCceeEEEeecccccccCCcccHHH
Q 008028 432 TKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVAST-GGLFDTVKEGITGFQMRSFHVECDRVDLADVAA 510 (580)
Q Consensus 432 ~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~-gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~ 510 (580)
+.........+|+.||++++|| |.+++|||++|+|+|+++. ||..+++.++ +|+++ ++ |+++
T Consensus 269 g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v----------~~-d~~~ 331 (375)
T 3beo_A 269 EPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLA----------GT-DEET 331 (375)
T ss_dssp CCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEEC----------CS-CHHH
T ss_pred CCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEc----------CC-CHHH
Confidence 6666666778999999999998 7789999999999999964 8999988777 99986 65 9999
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHH--HHhcCCchHHHHHHHHHHH
Q 008028 511 IAKHVNRAVATYGTPALKEMIQNC--MALDLSWKEPARLWEKMLL 553 (580)
Q Consensus 511 la~~l~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~ 553 (580)
++++|.+++++ ++.+.+|++++ +.+.|+|+++++.+.+.++
T Consensus 332 la~~i~~ll~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 332 IFSLADELLSD--KEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp HHHHHHHHHHC--HHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--hHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 99999999997 67777777655 3357999999998887653
No 24
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.93 E-value=4.6e-25 Score=244.22 Aligned_cols=215 Identities=13% Similarity=0.063 Sum_probs=166.1
Q ss_pred cCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcC
Q 008028 285 ESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLG 364 (580)
Q Consensus 285 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 364 (580)
.+|.++++|+...+ ++ .++.+|||.++.....+... +...++++|
T Consensus 328 ~~d~~i~~s~~~~~-------~~---------~~i~~ipn~~~~~~~~~~~~-------------------~~~~r~~~~ 372 (568)
T 2vsy_A 328 LGDAFALPPALEPF-------YS---------EHVLRLQGAFQPSDTSRVVA-------------------EPPSRTQCG 372 (568)
T ss_dssp EECTTTSCTTTGGG-------CS---------SEEEECSSCSCCCCTTCCCC-------------------CCCCTGGGT
T ss_pred EECCCcCCcccccC-------Cc---------ceeEcCCCcCCCCCCCCCCC-------------------CCCCccccC
Confidence 58999999986432 11 18899999544322111111 112356778
Q ss_pred CCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC--CCeEEEEEe-cCChhhHHHHHHHHHHCC---CCeeEeccCChHH
Q 008028 365 LPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG--GNVQIVVLG-TGKKPMEQQIEQLEIICP---EKARGITKFSTPL 438 (580)
Q Consensus 365 lp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~--~~v~lii~G-~g~~~~~~~i~~l~~~~~---~~v~~~~~~~~~~ 438 (580)
++.+ .+++++||+.+ ||++.+++++.++.+ ++++|+|+| +|+ ..+.++++..+.+ ++|.+.+..+.+.
T Consensus 373 ~~~~---~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~--~~~~l~~~~~~~~l~~~~v~~~g~~~~~~ 446 (568)
T 2vsy_A 373 LPEQ---GVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGE--ADARLRAFAHAQGVDAQRLVFMPKLPHPQ 446 (568)
T ss_dssp CCTT---SCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTT--HHHHHHHHHHHTTCCGGGEEEECCCCHHH
T ss_pred CCCC---CEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHH--HHHHHHHHHHHcCCChhHEEeeCCCCHHH
Confidence 8632 35669999999 999999999999854 789999999 665 5666766666553 5688888877777
Q ss_pred HHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEE-------cCCC-------CcceeEecCceeEEEeecccccccCC
Q 008028 439 AHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIV-------ASTG-------GLFDTVKEGITGFQMRSFHVECDRVD 504 (580)
Q Consensus 439 ~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~-------s~~g-------g~~e~i~~~~~G~~~~~~~~~~~~v~ 504 (580)
...+|+.||++|+||.+ ++|++++|||+||+|||+ |+.| |+.|++.
T Consensus 447 ~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~------------------- 506 (568)
T 2vsy_A 447 YLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV------------------- 506 (568)
T ss_dssp HHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBC-------------------
T ss_pred HHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhc-------------------
Confidence 88899999999999999 999999999999999999 9998 8877652
Q ss_pred cccHHHHHHHHHHHHHhcChhHHHHHHHHH---H--HhcCCchHHHHHHHHHHHHHHhcCCCCC
Q 008028 505 LADVAAIAKHVNRAVATYGTPALKEMIQNC---M--ALDLSWKEPARLWEKMLLSMEVAGSEPG 563 (580)
Q Consensus 505 ~~d~~~la~~l~~ll~~~~~~~~~~~~~~~---~--~~~fs~~~~a~~~~~~~~~l~~~~~~~~ 563 (580)
.|+++++++|.+++++ ++.+.+|++++ + .+.|||+.++++|+++|++++......+
T Consensus 507 -~~~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~~~ 567 (568)
T 2vsy_A 507 -ADDAAFVAKAVALASD--PAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHGWLG 567 (568)
T ss_dssp -SSHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred -CCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2789999999999997 66777777665 3 3679999999999999999987655544
No 25
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.93 E-value=1.3e-24 Score=207.15 Aligned_cols=183 Identities=30% Similarity=0.532 Sum_probs=155.5
Q ss_pred EecCCCCCCCcC--CCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccCc-cccCHHHHHHHHhhhc
Q 008028 321 GIVNGMDVQEWN--PSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRLE-EQKGSDILAQAIPKFM 397 (580)
Q Consensus 321 ~I~NGvd~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl~-~~Kg~~~ll~a~~~l~ 397 (580)
.||||+|.+.|. |... .....+..++++++++ +.++|+|+||+. +.||++.+++++.++.
T Consensus 1 gipngvd~~~f~~~~~~~--------------~~~~~~~~~r~~~~~~---~~~~i~~~G~~~~~~K~~~~li~a~~~l~ 63 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTG--------------SRDERKKSLLSKFGMD---EGVTFMFIGRFDRGQKGVDVLLKAIEILS 63 (200)
T ss_dssp ----CCCTTTSSGGGSCS--------------CHHHHHHHHHHHTTCC---SCEEEEEESCBCSSSSCHHHHHHHHHHHT
T ss_pred CCCCccChhhcccccccc--------------chhhHHHHHHHHcCCC---CCCEEEEeeccccccCCHHHHHHHHHHHH
Confidence 479999999998 7531 1112256788999986 335999999999 9999999999999985
Q ss_pred --C--CCeEEEEEecCChhhHHHHHHHHHHCCCCeeE-eccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCce
Q 008028 398 --G--GNVQIVVLGTGKKPMEQQIEQLEIICPEKARG-ITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVP 472 (580)
Q Consensus 398 --~--~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~-~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~Pv 472 (580)
+ ++++|+|+|.+.+...+.++++..+++ ++.+ .+..+...+..+++.||++++||..|++|++++|||++|+||
T Consensus 64 ~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~Pv 142 (200)
T 2bfw_A 64 SKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIP 142 (200)
T ss_dssp TSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEE
T ss_pred hhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCE
Confidence 3 689999999988667778888888776 7888 777787788899999999999999999999999999999999
Q ss_pred EEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHH-hcChhHHHHHHHHH
Q 008028 473 IVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVA-TYGTPALKEMIQNC 534 (580)
Q Consensus 473 I~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~-~~~~~~~~~~~~~~ 534 (580)
|+++.++..+++ ++.+|+++ ++.|+++++++|.++++ + ++.+.+|++++
T Consensus 143 I~~~~~~~~e~~-~~~~g~~~----------~~~~~~~l~~~i~~l~~~~--~~~~~~~~~~a 192 (200)
T 2bfw_A 143 IASAVGGLRDII-TNETGILV----------KAGDPGELANAILKALELS--RSDLSKFRENC 192 (200)
T ss_dssp EEESCHHHHHHC-CTTTCEEE----------CTTCHHHHHHHHHHHHHCC--HHHHHHHHHHH
T ss_pred EEeCCCChHHHc-CCCceEEe----------cCCCHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 999999999999 99999998 89999999999999999 7 77777887776
No 26
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=99.92 E-value=2.3e-23 Score=229.14 Aligned_cols=366 Identities=13% Similarity=0.083 Sum_probs=242.4
Q ss_pred cccCCCCC-CCCCchHHHHHHHHHHHHH-HhHHhccCCCCCCCCCCCCceEEEecCCccchHHHH-HHHhhhccCcccc-
Q 008028 183 KIYGPKAG-LDYEDNQLRFSLLCQAALE-APRILNLNNNKYFSGPYGEDVLFIGNDWHTALLPCY-LKFMYQSKGIHKN- 258 (580)
Q Consensus 183 ~~y~~~~~-~~~~~~~~~~~~l~~~~~~-~~r~l~~~~~~~~~~~~~pDvVih~~~~~~~~l~~~-l~~~~~~~gi~~~- 258 (580)
.||++.+. .....|+.|..+|+.++++ ++|.+...... ++.--.+. +||+||.|++++..+ ++.+....|+-..
T Consensus 314 vLYp~D~~~~GkeLRLkQEyfl~sa~lqdilr~~~~~~~~-l~~l~~~~-~ihlNDtHpalai~ELmR~L~d~~gl~wd~ 391 (879)
T 1ygp_A 314 VLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFKKSKRP-WTEFPDQV-AIQLNDTHPTLAIVELQRVLVDLEKLDWHE 391 (879)
T ss_dssp SSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-GGGHHHHE-EEEEESSTTTHHHHHHHHHHHHTTCCCHHH
T ss_pred cCCCCCCCccchhhheehhhhhhhhHHHHHHHHHHHhCCC-hhhcCCce-EEEccCCcHHHHHHHHHHHHhhhcCCCHHH
Confidence 68886210 0134488899999999887 44544221000 00000134 999999999998877 5555544444331
Q ss_pred ------ceE-EEcC------------------------------------------CCC-------CCCCC---ccchHH
Q 008028 259 ------AKR-LCRP------------------------------------------RYD-------KPVKG---RKINWM 279 (580)
Q Consensus 259 ------~~~-~~l~------------------------------------------~~~-------~~~~~---~~~~~~ 279 (580)
... ||-| +.. -...+ +.++|.
T Consensus 392 Aw~iv~~t~~yTnHT~lpealE~wpv~l~~~lLpr~~~II~ein~~f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~MA 471 (879)
T 1ygp_A 392 AWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFPKDVDLLSRISIIEENSPERQIRMA 471 (879)
T ss_dssp HHHHHHHHEEEEECCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSTTCTHHHHHHCSEECCSSSCEEEHH
T ss_pred HHHHHHHheeeecCcCchHhhccCCHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHhcceeccCCCcceeehH
Confidence 122 5522 100 00011 478999
Q ss_pred HHHHhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCCCCCCcCCCCccc---cccccC------------
Q 008028 280 KAGILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRY---INVNYD------------ 344 (580)
Q Consensus 280 ~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~---l~~~~~------------ 344 (580)
..++..|..|++||+-..+-+.+..+..+ .++++..++..++|||+..+|.....+. +..++.
T Consensus 472 ~LAi~~S~~vNGVs~LH~ev~k~~~f~df--~~l~P~~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~iG~~~~~W~~d~~ 549 (879)
T 1ygp_A 472 FLAIVGSHKVNGVVELHSELIKTTIFKDF--IKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEYLLDMA 549 (879)
T ss_dssp HHHHHHEEEEEESSHHHHHHHHHTTTHHH--HHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHTTCTTCGGGTCGG
T ss_pred HHHHHhcCceeEehHHHHHHHHHHHhHHH--HHhCCCCcccCcCCCcCCchhhhhcCHHHHHHHHHhcCCChhhhhhCHH
Confidence 99999999999999977777754322222 1334444899999999998886322111 111111
Q ss_pred ----------c----hhhhccchHHHHH----HHHHc-CCCCC-----CCCcEEEEEccCccccCHHH-HHHHHhhhcC-
Q 008028 345 ----------A----TTVMNAKPLVKEA----LQSQL-GLPVD-----RNIPLIGFIGRLEEQKGSDI-LAQAIPKFMG- 398 (580)
Q Consensus 345 ----------~----~~~~~~~~~~~~~----~~~~~-glp~~-----~~~~~i~f~Grl~~~Kg~~~-ll~a~~~l~~- 398 (580)
+ ..+...|..+|.. +++.. |+..+ ++..+++++.|+.+||+..+ ++..+.++.+
T Consensus 550 ~L~~l~~~~~D~~f~~~l~~iK~~nK~~La~~i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~I 629 (879)
T 1ygp_A 550 KLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAM 629 (879)
T ss_dssp GGGGGGGGGGCTHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHH
Confidence 1 1133444445544 35567 88888 88999999999999999999 7877665521
Q ss_pred -----------------CCeEEEEEecCC------hhhHHHHHHHHH------HCCC--CeeEeccCChHHHHHHHhcCC
Q 008028 399 -----------------GNVQIVVLGTGK------KPMEQQIEQLEI------ICPE--KARGITKFSTPLAHKIIAGAD 447 (580)
Q Consensus 399 -----------------~~v~lii~G~g~------~~~~~~i~~l~~------~~~~--~v~~~~~~~~~~~~~~~~~aD 447 (580)
.|+++||.|+.. +.+++.|.+++. +..+ +|+|+.+|+..++..++.+||
T Consensus 630 k~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaD 709 (879)
T 1ygp_A 630 KNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASD 709 (879)
T ss_dssp HHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCS
T ss_pred HhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhhCCceEEEEeCCCCHHHHHHhhhhhh
Confidence 479999999954 567777777765 3445 799999999999999999999
Q ss_pred EEEecCC--CCCccHHHHHHHHcCCceEEcCCCCcceeEec--CceeEEEee----------------cccc--c-----
Q 008028 448 FMLVPSR--FEPCGLIQLHAMRYGTVPIVASTGGLFDTVKE--GITGFQMRS----------------FHVE--C----- 500 (580)
Q Consensus 448 i~l~ps~--~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G~~~~~----------------~~~~--~----- 500 (580)
++.+.|+ .|++|++.|++|.+|.+.|.+-.|.+.|+.++ .+|+|+||. |..+ .
T Consensus 710 vseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~~~~~~~~~~y~~~~~l~~v~d 789 (879)
T 1ygp_A 710 LSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNLSENVEELRYNHQYHPQDLPSSLDSVLS 789 (879)
T ss_dssp EEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSEEESCCHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred hhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEEEccCCHHHHHHHHHhCchhccCCCHHHHHHHH
Confidence 9999998 69999999999999998777777777777655 569999993 1111 0
Q ss_pred ----ccC---CcccHHHHHHHHHH------HH---Hhc------------Chh-HHHHHHHHHHH--hcCCchHHHHHHH
Q 008028 501 ----DRV---DLADVAAIAKHVNR------AV---ATY------------GTP-ALKEMIQNCMA--LDLSWKEPARLWE 549 (580)
Q Consensus 501 ----~~v---~~~d~~~la~~l~~------ll---~~~------------~~~-~~~~~~~~~~~--~~fs~~~~a~~~~ 549 (580)
-.+ ++.+-+.+.+.|.. ++ ..| +++ +|.+|+...++ -.||-++++++|.
T Consensus 790 ~i~~g~f~~~~~~~f~~l~~~L~~~~D~y~vl~Df~sY~~~q~~v~~~Y~d~~~~W~~~~i~NiA~~G~FSSDRtI~eYa 869 (879)
T 1ygp_A 790 YIESGQFSPENPNEFKPLVDSIKYHGDYYLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYS 869 (879)
T ss_dssp HTC--CCCTTSTTTTHHHHHHHHHSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHGGGBHHHHHHHHH
T ss_pred HHhcCCCCCCChHHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCccCchHHHHHHH
Confidence 011 23445556666643 33 122 245 78888776644 4899999999997
Q ss_pred HHH
Q 008028 550 KML 552 (580)
Q Consensus 550 ~~~ 552 (580)
+-+
T Consensus 870 ~~I 872 (879)
T 1ygp_A 870 DTI 872 (879)
T ss_dssp HHT
T ss_pred HHh
Confidence 643
No 27
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.92 E-value=1.3e-24 Score=228.14 Aligned_cols=279 Identities=13% Similarity=0.034 Sum_probs=190.0
Q ss_pred CCceEEEecCC-ccchHHHHHHHhhhccCccccceE-EEcCCCCCCCC--CccchHHHHH-HhcCceeEeeCHHHHHHHH
Q 008028 227 GEDVLFIGNDW-HTALLPCYLKFMYQSKGIHKNAKR-LCRPRYDKPVK--GRKINWMKAG-ILESDRVLTVSPHYAKELI 301 (580)
Q Consensus 227 ~pDvVih~~~~-~~~~l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~~--~~~~~~~~~~-~~~ad~vi~vS~~~~~~l~ 301 (580)
+|| |+|+|.. ...+.+..+.... ..++ ++.++...... .....+.+.. .+.+|.++++|+..++.+.
T Consensus 86 ~pD-vv~~~~~~~~~~~~~~~a~~~-------~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l~ 157 (384)
T 1vgv_A 86 KPD-VVLVHGDTTTTLATSLAAFYQ-------RIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLL 157 (384)
T ss_dssp CCS-EEEEETTCHHHHHHHHHHHTT-------TCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEESSHHHHHHHH
T ss_pred CCC-EEEEeCCchHHHHHHHHHHHH-------CCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcCcHHHHHHHH
Confidence 599 7888764 3333333333322 2334 55554321111 1111223344 3469999999999999987
Q ss_pred ccccCCcchhhhhhcCCeeEecCCC-CCCCcCCCCccccccccCchhhhccchHHHHHHHHHcC-CCCCCCCcEEEEEcc
Q 008028 302 SGEEKGVELDNIIRKTGISGIVNGM-DVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLG-LPVDRNIPLIGFIGR 379 (580)
Q Consensus 302 ~~~~~g~~~~~~~~~~~i~~I~NGv-d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-lp~~~~~~~i~f~Gr 379 (580)
+ .|++.+ ++.+++||+ |...+.+... ..+...+..+++++| ++. ++.++++++||
T Consensus 158 ~---~g~~~~------~i~vi~n~~~d~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~vl~~~gr 214 (384)
T 1vgv_A 158 R---ENVADS------RIFITGNTVIDALLWVRDQV-------------MSSDKLRSELAANYPFIDP-DKKMILVTGHR 214 (384)
T ss_dssp H---TTCCGG------GEEECCCHHHHHHHHHHHHT-------------TTCHHHHHHHHTTCTTCCT-TSEEEEEECCC
T ss_pred H---cCCChh------hEEEeCChHHHHHHhhhhcc-------------ccchhhhHHHHHhccccCC-CCCEEEEEeCC
Confidence 5 576654 889999995 4221111000 000001235667777 642 23357889999
Q ss_pred Cccc-cCHHHHHHHHhhhcC--CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecCCCC
Q 008028 380 LEEQ-KGSDILAQAIPKFMG--GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSRFE 456 (580)
Q Consensus 380 l~~~-Kg~~~ll~a~~~l~~--~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps~~E 456 (580)
+.+. ||++.+++|+.++.+ ++++|++++..+..+.+.++++... .+++.+.+.........+|+.||+++.||
T Consensus 215 ~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~v~~S--- 290 (384)
T 1vgv_A 215 RESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGH-VKNVILIDPQEYLPFVWLMNHAWLILTDS--- 290 (384)
T ss_dssp BSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHHCSEEEESS---
T ss_pred ccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhc-CCCEEEeCCCCHHHHHHHHHhCcEEEECC---
Confidence 9876 999999999999865 5899988633223466667666432 24677765444456778999999999999
Q ss_pred CccHHHHHHHHcCCceEEcCC-CCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHHH-
Q 008028 457 PCGLIQLHAMRYGTVPIVAST-GGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQNC- 534 (580)
Q Consensus 457 ~~g~~~lEAma~G~PvI~s~~-gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~~- 534 (580)
|.+++|||++|+|+|+++. ||..+++.++ +|+++ ++ |+++++++|.+++++ ++.+.+|++++
T Consensus 291 --g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv----------~~-d~~~la~~i~~ll~d--~~~~~~~~~~~~ 354 (384)
T 1vgv_A 291 --GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLV----------GT-DKQRIVEEVTRLLKD--ENEYQAMSRAHN 354 (384)
T ss_dssp --STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEE----------CS-SHHHHHHHHHHHHHC--HHHHHHHHSSCC
T ss_pred --cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEe----------CC-CHHHHHHHHHHHHhC--hHHHhhhhhccC
Confidence 4458999999999999986 8999988777 99987 66 999999999999997 77777887665
Q ss_pred -HHhcCCchHHHHHHHHHHHHHH
Q 008028 535 -MALDLSWKEPARLWEKMLLSME 556 (580)
Q Consensus 535 -~~~~fs~~~~a~~~~~~~~~l~ 556 (580)
+.+.|+|+++++.+.++|.+++
T Consensus 355 ~~~~~~~~~~i~~~~~~~~~~~~ 377 (384)
T 1vgv_A 355 PYGDGQACSRILEALKNNRISLG 377 (384)
T ss_dssp TTCCSCHHHHHHHHHHHTCCCC-
T ss_pred CCcCCCHHHHHHHHHHHHHHhhc
Confidence 3357999999999988877665
No 28
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.92 E-value=8e-24 Score=226.75 Aligned_cols=286 Identities=13% Similarity=0.086 Sum_probs=209.4
Q ss_pred ceEEEecCCccchHHHHHHHhhhccCccccceE-EEcCCCCC-CCCCccch-----HHHHHHhcCceeEeeCHHHHHHHH
Q 008028 229 DVLFIGNDWHTALLPCYLKFMYQSKGIHKNAKR-LCRPRYDK-PVKGRKIN-----WMKAGILESDRVLTVSPHYAKELI 301 (580)
Q Consensus 229 DvVih~~~~~~~~l~~~l~~~~~~~gi~~~~~~-~~l~~~~~-~~~~~~~~-----~~~~~~~~ad~vi~vS~~~~~~l~ 301 (580)
| +|..||+|..++|.+++... .+.++ |.+|--.+ ....+.+. .+..++..+|.|.+.++.+++.+.
T Consensus 151 D-~VwVhDYhL~llp~~lR~~~------~~~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl 223 (496)
T 3t5t_A 151 P-VYLVHDYQLVGVPALLREQR------PDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFL 223 (496)
T ss_dssp C-EEEEESGGGTTHHHHHHHHC------TTSCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHH
T ss_pred C-EEEEeCccHhHHHHHHHhhC------CCCeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 5 89999999999999998764 34567 66663322 22222232 334577799999999999999876
Q ss_pred ccccC---Ccchhh-------hhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCC
Q 008028 302 SGEEK---GVELDN-------IIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNI 371 (580)
Q Consensus 302 ~~~~~---g~~~~~-------~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~ 371 (580)
+.+.. |.+.+. .-+..+|.++|+|||...|.+.... .+..++++++ +.
T Consensus 224 ~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-----------------~~~~lr~~~~-----~~ 281 (496)
T 3t5t_A 224 ESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-----------------LPEGIEEWAD-----GH 281 (496)
T ss_dssp HHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC-----------------CCTTHHHHHT-----TS
T ss_pred HHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH-----------------HHHHHHHHhC-----Cc
Confidence 53322 322110 0122478999999999998765320 0134566665 45
Q ss_pred cEEEEEccCccccCHHHHHHHHhhhcC--C---CeEEEEEecC-----C--hhhHHHHHHHHHHC----CC-CeeEeccC
Q 008028 372 PLIGFIGRLEEQKGSDILAQAIPKFMG--G---NVQIVVLGTG-----K--KPMEQQIEQLEIIC----PE-KARGITKF 434 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~~~ll~a~~~l~~--~---~v~lii~G~g-----~--~~~~~~i~~l~~~~----~~-~v~~~~~~ 434 (580)
++|+++||+++.||++.+|+|+ ++.+ + ++.|+++|.+ + .+++++++++..+. +. .|.+....
T Consensus 282 ~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v 360 (496)
T 3t5t_A 282 RLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDN 360 (496)
T ss_dssp EEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECC
T ss_pred eEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCC
Confidence 7999999999999999999999 7754 3 4678888742 1 24566666665432 21 47777766
Q ss_pred ChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcC---CceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHH
Q 008028 435 STPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYG---TVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAI 511 (580)
Q Consensus 435 ~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G---~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~l 511 (580)
+.+....+|+.||++++||..|++|++.+|||+|| .|+|+|..+|..+.+. .+|+++ +|.|++++
T Consensus 361 ~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~--~~allV----------nP~D~~~l 428 (496)
T 3t5t_A 361 DVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLG--EYCRSV----------NPFDLVEQ 428 (496)
T ss_dssp CHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG--GGSEEE----------CTTBHHHH
T ss_pred CHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC--CCEEEE----------CCCCHHHH
Confidence 77778889999999999999999999999999996 8999999999888883 478987 99999999
Q ss_pred HHHHHHHHHhcChhHHHHHHHHH--HHhcCCchHHHHHHHHHHHHHHh
Q 008028 512 AKHVNRAVATYGTPALKEMIQNC--MALDLSWKEPARLWEKMLLSMEV 557 (580)
Q Consensus 512 a~~l~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~~l~~ 557 (580)
|++|.++|++. .+++.+++++. ..+.+++...++.+++.+.....
T Consensus 429 A~AI~~aL~m~-~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 429 AEAISAALAAG-PRQRAEAAARRRDAARPWTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhccc
Confidence 99999999972 35555555554 33679999999999988877644
No 29
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.90 E-value=4e-23 Score=190.77 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=130.2
Q ss_pred cEEEEEccCccccCHHHHHHHHhhhcC-CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEE
Q 008028 372 PLIGFIGRLEEQKGSDILAQAIPKFMG-GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFML 450 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~~~ll~a~~~l~~-~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l 450 (580)
++|+|+||+.++||++.+++++.++.+ ++++|+|+|+|+ ..+.++++..+++.++.+ +..+.+.+..+|+.||+++
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v 79 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGP--DEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYV 79 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCST--THHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEE
T ss_pred eEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCc--cHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEE
Confidence 689999999999999999999999865 689999999987 356677777666656666 6667777888999999999
Q ss_pred ecCCCCCccHHHHHHHHcCC-ceEE-cCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHH
Q 008028 451 VPSRFEPCGLIQLHAMRYGT-VPIV-ASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALK 528 (580)
Q Consensus 451 ~ps~~E~~g~~~lEAma~G~-PvI~-s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~ 528 (580)
+||.+|++|++++|||++|+ |||+ ++.|+..+++.++.+ ++ ++.|+++++++|.+++++ ++.+.
T Consensus 80 ~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~----------~~~~~~~l~~~i~~l~~~--~~~~~ 145 (166)
T 3qhp_A 80 HAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LF----------EPNNAKDLSAKIDWWLEN--KLERE 145 (166)
T ss_dssp ECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EE----------CTTCHHHHHHHHHHHHHC--HHHHH
T ss_pred ECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EE----------cCCCHHHHHHHHHHHHhC--HHHHH
Confidence 99999999999999999998 9999 568889998887655 44 899999999999999997 77777
Q ss_pred HHHHHH--HHhcCCchHHHHH
Q 008028 529 EMIQNC--MALDLSWKEPARL 547 (580)
Q Consensus 529 ~~~~~~--~~~~fs~~~~a~~ 547 (580)
++++++ ..++|||+.++++
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 146 RMQNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHCChhhhhcC
Confidence 777766 3378999998764
No 30
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.86 E-value=7.2e-20 Score=191.59 Aligned_cols=219 Identities=13% Similarity=0.019 Sum_probs=159.7
Q ss_pred HHhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCC-CCCCcCCCCccccccccCchhhhccchHHHHHHH
Q 008028 282 GILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGM-DVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQ 360 (580)
Q Consensus 282 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGv-d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (580)
..+.+|.++++|+..++.+.+ .|++.+ ++.+++|++ |...+.+. +..++
T Consensus 143 ~~~~~~~~~~~s~~~~~~l~~---~g~~~~------ki~vi~n~~~d~~~~~~~---------------------~~~~~ 192 (376)
T 1v4v_A 143 TDVLTDLDFAPTPLAKANLLK---EGKREE------GILVTGQTGVDAVLLAAK---------------------LGRLP 192 (376)
T ss_dssp HHHHCSEEEESSHHHHHHHHT---TTCCGG------GEEECCCHHHHHHHHHHH---------------------HCCCC
T ss_pred HHHHhceeeCCCHHHHHHHHH---cCCCcc------eEEEECCchHHHHhhhhh---------------------hhHHH
Confidence 445799999999999999986 577655 889999965 42111000 00011
Q ss_pred HHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC--CCeEEEEE-ecCChhhHHHHHHHHHHCCCCeeEeccCChH
Q 008028 361 SQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG--GNVQIVVL-GTGKKPMEQQIEQLEIICPEKARGITKFSTP 437 (580)
Q Consensus 361 ~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~--~~v~lii~-G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~ 437 (580)
+++ + ++.++++++||+...||++.+++|+.++.+ ++++++++ |+++ .+.+.++++... .+++.+.+.....
T Consensus 193 ~~~--~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~-~~~~~l~~~~~~-~~~v~~~g~~g~~ 266 (376)
T 1v4v_A 193 EGL--P--EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNP-VVREAVFPVLKG-VRNFVLLDPLEYG 266 (376)
T ss_dssp TTC--C--SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCH-HHHHHHHHHHTT-CTTEEEECCCCHH
T ss_pred Hhc--C--CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCH-HHHHHHHHHhcc-CCCEEEECCCCHH
Confidence 111 1 233567889999989999999999998854 57898886 6553 355666666432 2467777554444
Q ss_pred HHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEc-CCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHH
Q 008028 438 LAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVA-STGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVN 516 (580)
Q Consensus 438 ~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s-~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~ 516 (580)
....+|+.||+++.|| .|+ ++|||++|+|+|++ +.++..+++.+ ++|+++ + .|+++++++|.
T Consensus 267 ~~~~~~~~ad~~v~~S----~g~-~lEA~a~G~PvI~~~~~~~~~~~~~~-g~g~lv----------~-~d~~~la~~i~ 329 (376)
T 1v4v_A 267 SMAALMRASLLLVTDS----GGL-QEEGAALGVPVVVLRNVTERPEGLKA-GILKLA----------G-TDPEGVYRVVK 329 (376)
T ss_dssp HHHHHHHTEEEEEESC----HHH-HHHHHHTTCCEEECSSSCSCHHHHHH-TSEEEC----------C-SCHHHHHHHHH
T ss_pred HHHHHHHhCcEEEECC----cCH-HHHHHHcCCCEEeccCCCcchhhhcC-CceEEC----------C-CCHHHHHHHHH
Confidence 5667999999999998 244 88999999999987 47888887654 478875 4 59999999999
Q ss_pred HHHHhcChhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Q 008028 517 RAVATYGTPALKEMIQNCMALDLSWKEPARLWEKMLLSMEV 557 (580)
Q Consensus 517 ~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~ 557 (580)
+++++ ++.+.+|+++ .+.|.+...++++.+.+.+++.
T Consensus 330 ~ll~d--~~~~~~~~~~--~~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 330 GLLEN--PEELSRMRKA--KNPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp HHHTC--HHHHHHHHHS--CCSSCCSCHHHHHHHHHHHHTT
T ss_pred HHHhC--hHhhhhhccc--CCCCCCChHHHHHHHHHHHHhc
Confidence 99996 6777777753 3668888889999999888874
No 31
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.84 E-value=2.8e-20 Score=174.15 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=125.4
Q ss_pred CCCcEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCCh--hhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcC
Q 008028 369 RNIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKK--PMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGA 446 (580)
Q Consensus 369 ~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~--~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 446 (580)
.+.++|+|+||+.+.||++.+++++.++ ++++|+|+|.+.. .+++.++++....++++.+.+..+...+..+++.|
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 98 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRC 98 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHC
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 4668999999999999999999999998 6899999999863 56666664444566789999888888888999999
Q ss_pred CEEEecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 447 DFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 447 Di~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|++++||..|++|++++|||+||+|||+++.++..+++.++.+|+++ +.|+++++++|.+++++
T Consensus 99 di~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-----------~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 99 KGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-----------NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp SEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-----------CSCHHHHHHHHHHHHHC
T ss_pred CEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-----------CCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999973 67999999999999997
No 32
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.79 E-value=4.2e-18 Score=178.74 Aligned_cols=186 Identities=10% Similarity=0.027 Sum_probs=136.8
Q ss_pred HHHHHHhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHH
Q 008028 278 WMKAGILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKE 357 (580)
Q Consensus 278 ~~~~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 357 (580)
+.+..++.+|.++++|+..++.+.+ .|++ ++.+|+|+. |.+....
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~l~~---~g~~--------ki~vi~n~~----f~~~~~~-------------------- 190 (374)
T 2xci_A 146 IEKILSKKFDLIIMRTQEDVEKFKT---FGAK--------RVFSCGNLK----FICQKGK-------------------- 190 (374)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHT---TTCC--------SEEECCCGG----GCCCCCS--------------------
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH---cCCC--------eEEEcCCCc----cCCCcCh--------------------
Confidence 6678889999999999999999986 4654 688999973 2211100
Q ss_pred HHHHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC--CCeEEEEEecCChhhHHHHHHHHHHCCC---------
Q 008028 358 ALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG--GNVQIVVLGTGKKPMEQQIEQLEIICPE--------- 426 (580)
Q Consensus 358 ~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~--~~v~lii~G~g~~~~~~~i~~l~~~~~~--------- 426 (580)
++ .+ ..+++++.|+ ..||.+.+++|+.++.+ ++++|+|+|+|+.. .+.++++..+.+.
T Consensus 191 --~~--~l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~~-~~~l~~~~~~~gl~~~~~~~~~ 259 (374)
T 2xci_A 191 --GI--KL----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIEN-AKIFEKKARDFGFKTSFFENLE 259 (374)
T ss_dssp --CC--CC----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGGG-HHHHHHHHHHTTCCEEETTCCC
T ss_pred --hh--hh----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHHH-HHHHHHHHHHCCCceEEecCCC
Confidence 00 01 1256777775 46899999999999865 68999999988632 2345555544432
Q ss_pred -CeeEeccCChHHHHHHHhcCCEEEecCCC-CCccHHHHHHHHcCCceEEc-CCCCcceeEecC-ceeEEEeeccccccc
Q 008028 427 -KARGITKFSTPLAHKIIAGADFMLVPSRF-EPCGLIQLHAMRYGTVPIVA-STGGLFDTVKEG-ITGFQMRSFHVECDR 502 (580)
Q Consensus 427 -~v~~~~~~~~~~~~~~~~~aDi~l~ps~~-E~~g~~~lEAma~G~PvI~s-~~gg~~e~i~~~-~~G~~~~~~~~~~~~ 502 (580)
++.+ ..+. ..+..+|+.||++++||.+ |.+|++++|||+||+|||++ +.+++.|.+.+. .+|+++
T Consensus 260 ~~v~~-~~~~-~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~--------- 328 (374)
T 2xci_A 260 GDVIL-VDRF-GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGF--------- 328 (374)
T ss_dssp SSEEE-CCSS-SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEE---------
T ss_pred CcEEE-ECCH-HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEE---------
Confidence 2222 3333 3456799999998888765 67899999999999999975 688888887653 477776
Q ss_pred CCcccHHHHHHHHHHHHHh
Q 008028 503 VDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 503 v~~~d~~~la~~l~~ll~~ 521 (580)
.+.|+++++++|.+++++
T Consensus 329 -~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 329 -EVKNETELVTKLTELLSV 346 (374)
T ss_dssp -ECCSHHHHHHHHHHHHHS
T ss_pred -EeCCHHHHHHHHHHHHhH
Confidence 788999999999999996
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.70 E-value=1.4e-15 Score=161.13 Aligned_cols=226 Identities=13% Similarity=0.052 Sum_probs=156.4
Q ss_pred HHHHH-hcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCC-CCCCCcCCCCccccccccCchhhhccchHHH
Q 008028 279 MKAGI-LESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNG-MDVQEWNPSTDRYINVNYDATTVMNAKPLVK 356 (580)
Q Consensus 279 ~~~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NG-vd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 356 (580)
.+..+ +.+|.+++.|+..++.+.+ .|++.+ +|.++.|. +|...+.+.... +
T Consensus 162 ~r~~~~~~a~~~~~~se~~~~~l~~---~Gi~~~------~i~vvGn~~~D~~~~~~~~~~------------------~ 214 (403)
T 3ot5_A 162 NRQLTGVMADIHFSPTKQAKENLLA---EGKDPA------TIFVTGNTAIDALKTTVQKDY------------------H 214 (403)
T ss_dssp HHHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHSCTTC------------------C
T ss_pred HHHHHHHhcCEEECCCHHHHHHHHH---cCCCcc------cEEEeCCchHHHHHhhhhhhc------------------c
Confidence 34433 4689999999999999987 687766 88999884 554333222100 1
Q ss_pred HHHHHHcCCCCCCCCcEEEEEccCcc-ccCHHHHHHHHhhhcC--CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEecc
Q 008028 357 EALQSQLGLPVDRNIPLIGFIGRLEE-QKGSDILAQAIPKFMG--GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITK 433 (580)
Q Consensus 357 ~~~~~~~glp~~~~~~~i~f~Grl~~-~Kg~~~ll~a~~~l~~--~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~ 433 (580)
...++++ + ++..++++.+|.+. .|+++.+++|+.++.+ +++++++.+..++...+.++++... ..++.+...
T Consensus 215 ~~~~~~l--~--~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~~v~l~~~ 289 (403)
T 3ot5_A 215 HPILENL--G--DNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGG-HERIHLIEP 289 (403)
T ss_dssp CHHHHSC--T--TCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTT-CTTEEEECC
T ss_pred hHHHHhc--c--CCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCC-CCCEEEeCC
Confidence 1223333 2 23345667778654 4778999999998865 6899998743333456666664322 246777766
Q ss_pred CChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEc-CCCCcceeEecCceeEEEeecccccccCCcccHHHHH
Q 008028 434 FSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVA-STGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIA 512 (580)
Q Consensus 434 ~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s-~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la 512 (580)
........+++.||+++.+| |...+||+++|+|+|++ +.++..+.+..| +|+++ .+ |.++++
T Consensus 290 l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv----------~~-d~~~l~ 352 (403)
T 3ot5_A 290 LDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLI----------GT-NKENLI 352 (403)
T ss_dssp CCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEEC----------CS-CHHHHH
T ss_pred CCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEc----------CC-CHHHHH
Confidence 66556777999999999887 55669999999999999 678887876554 78875 44 899999
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Q 008028 513 KHVNRAVATYGTPALKEMIQNCMALDLSWKEPARLWEKMLLSMEV 557 (580)
Q Consensus 513 ~~l~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~ 557 (580)
+++.+++++ ++.+.+|.+++ ..|.....+++..+.+.+.+.
T Consensus 353 ~ai~~ll~~--~~~~~~m~~~~--~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 353 KEALDLLDN--KESHDKMAQAA--NPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHHC--HHHHHHHHHSC--CTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--HHHHHHHHhhc--CcccCCcHHHHHHHHHHHHhC
Confidence 999999997 66677775432 346656667777777766664
No 34
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.70 E-value=6.2e-16 Score=163.45 Aligned_cols=229 Identities=15% Similarity=0.047 Sum_probs=154.5
Q ss_pred HHHHH-HhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCC-CCCCcCCCCccccccccCchhhhccchHH
Q 008028 278 WMKAG-ILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGM-DVQEWNPSTDRYINVNYDATTVMNAKPLV 355 (580)
Q Consensus 278 ~~~~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGv-d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 355 (580)
..+.. .+.+|.+++.|+..++.+.+ .|++.+ +|.++.|.+ |...+.+... ......
T Consensus 158 ~~r~~~~~~a~~~~~~se~~~~~l~~---~G~~~~------ki~vvGn~~~d~~~~~~~~~-------------~~~~~~ 215 (396)
T 3dzc_A 158 GNRKLTAALTQYHFAPTDTSRANLLQ---ENYNAE------NIFVTGNTVIDALLAVREKI-------------HTDMDL 215 (396)
T ss_dssp HHHHHHHHTCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCHHHHHHHHHHHHH-------------HHCHHH
T ss_pred HHHHHHHHhcCEEECCCHHHHHHHHH---cCCCcC------cEEEECCcHHHHHHHhhhhc-------------ccchhh
Confidence 34554 46889999999999999986 687765 788888854 4221111000 000011
Q ss_pred HHHHHHHcC-CCCCCCCcEEEEEccCc-cccCHHHHHHHHhhhcC--CCeEEEEE-ecCChhhHHHHHHHHHHCCCCeeE
Q 008028 356 KEALQSQLG-LPVDRNIPLIGFIGRLE-EQKGSDILAQAIPKFMG--GNVQIVVL-GTGKKPMEQQIEQLEIICPEKARG 430 (580)
Q Consensus 356 ~~~~~~~~g-lp~~~~~~~i~f~Grl~-~~Kg~~~ll~a~~~l~~--~~v~lii~-G~g~~~~~~~i~~l~~~~~~~v~~ 430 (580)
++.+++++| ++.+ +..++++.+|.+ ..|+++.+++|+.++.+ +++++++. |.+ +...+.++++.. ...++.+
T Consensus 216 ~~~~r~~lg~l~~~-~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~-~~~~~~l~~~~~-~~~~v~~ 292 (396)
T 3dzc_A 216 QATLESQFPMLDAS-KKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLN-PNVREPVNKLLK-GVSNIVL 292 (396)
T ss_dssp HHHHHHTCTTCCTT-SEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBC-HHHHHHHHHHTT-TCTTEEE
T ss_pred HHHHHHHhCccCCC-CCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCC-hHHHHHHHHHHc-CCCCEEE
Confidence 366788888 4422 223445555654 35789999999999865 68999986 544 345666666422 2245766
Q ss_pred eccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEc-CCCCcceeEecCceeEEEeecccccccCCcccHH
Q 008028 431 ITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVA-STGGLFDTVKEGITGFQMRSFHVECDRVDLADVA 509 (580)
Q Consensus 431 ~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s-~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~ 509 (580)
...........+|+.||+++.+| |.+++|||++|+|+|++ +.++..+.+..| +++++ . .|.+
T Consensus 293 ~~~lg~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv----------~-~d~~ 355 (396)
T 3dzc_A 293 IEPQQYLPFVYLMDRAHIILTDS-----GGIQEEAPSLGKPVLVMRETTERPEAVAAG-TVKLV----------G-TNQQ 355 (396)
T ss_dssp ECCCCHHHHHHHHHHCSEEEESC-----SGGGTTGGGGTCCEEECCSSCSCHHHHHHT-SEEEC----------T-TCHH
T ss_pred eCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHcCCCEEEccCCCcchHHHHcC-ceEEc----------C-CCHH
Confidence 65554445557999999999998 34448999999999999 688888877666 56664 4 4899
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 008028 510 AIAKHVNRAVATYGTPALKEMIQNCMALDLSWKEPARLWEKML 552 (580)
Q Consensus 510 ~la~~l~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~ 552 (580)
++++++.+++++ ++.+.+|.++. ..|.....+++..+.+
T Consensus 356 ~l~~ai~~ll~d--~~~~~~m~~~~--~~~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 356 QICDALSLLLTD--PQAYQAMSQAH--NPYGDGKACQRIADIL 394 (396)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHTSC--CTTCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--HHHHHHHhhcc--CCCcCChHHHHHHHHH
Confidence 999999999997 66777776543 3465556666666554
No 35
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.68 E-value=7.4e-16 Score=162.91 Aligned_cols=159 Identities=13% Similarity=0.062 Sum_probs=118.7
Q ss_pred CcEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEE
Q 008028 371 IPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFML 450 (580)
Q Consensus 371 ~~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l 450 (580)
..++++.|++. .++.+.+.++++.+.+.++++++++.+.. ..+.++ +.+.++.+.+..+ ...+++.||++|
T Consensus 243 ~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~l~----~~~~~v~~~~~~~---~~~~l~~ad~~v 313 (412)
T 3otg_A 243 PLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSL-DVSGLG----EVPANVRLESWVP---QAALLPHVDLVV 313 (412)
T ss_dssp CEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSC-CCTTCC----CCCTTEEEESCCC---HHHHGGGCSEEE
T ss_pred CEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCC-Chhhhc----cCCCcEEEeCCCC---HHHHHhcCcEEE
Confidence 35678889986 78888888888887766788887776542 111111 2345677766553 446899999999
Q ss_pred ecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHHHhcCh
Q 008028 451 VPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAVATYGT 524 (580)
Q Consensus 451 ~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll~~~~~ 524 (580)
.++ .+++++|||++|+|+|+...++ ..+.+.+.++|+++ ++. |+++++++|.+++++ +
T Consensus 314 ~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~----------~~~~~~~~~l~~ai~~ll~~--~ 377 (412)
T 3otg_A 314 HHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHL----------LPDNISPDSVSGAAKRLLAE--E 377 (412)
T ss_dssp ESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------CGGGCCHHHHHHHHHHHHHC--H
T ss_pred ECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEec----------CcccCCHHHHHHHHHHHHhC--H
Confidence 765 3488999999999999976554 66777778899987 766 899999999999997 6
Q ss_pred hHHHHHHHHH--HHhcCCchHHHHHHHHHHHH
Q 008028 525 PALKEMIQNC--MALDLSWKEPARLWEKMLLS 554 (580)
Q Consensus 525 ~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~~ 554 (580)
+.+.+|.+.+ +...++++++++.+++++.+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 378 SYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 6666666554 55678999999999888753
No 36
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.67 E-value=9.3e-16 Score=158.19 Aligned_cols=241 Identities=14% Similarity=0.003 Sum_probs=162.0
Q ss_pred CCceEEEecCC-ccch-HHHHHHHhhhccCccccceE-EEcCCCCCCC---CCccchHHHHHHhcCceeEeeCHHHHHHH
Q 008028 227 GEDVLFIGNDW-HTAL-LPCYLKFMYQSKGIHKNAKR-LCRPRYDKPV---KGRKINWMKAGILESDRVLTVSPHYAKEL 300 (580)
Q Consensus 227 ~pDvVih~~~~-~~~~-l~~~l~~~~~~~gi~~~~~~-~~l~~~~~~~---~~~~~~~~~~~~~~ad~vi~vS~~~~~~l 300 (580)
++|+|+..++. +... ...+++.+. . .+.++ +++|+..+.. .......++..++.||.|+++|+.+++.+
T Consensus 74 ~~DvIi~q~P~~~~~~~~~~~~~~lk----~-~~~k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~~~~~~l 148 (339)
T 3rhz_A 74 HGDVVIFQTPTWNTTEFDEKLMNKLK----L-YDIKIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKL 148 (339)
T ss_dssp TTCEEEEEECCSSCHHHHHHHHHHHT----T-SSCEEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCcchhhHHHHHHHHHH----h-cCCEEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCHHHHHHH
Confidence 57965554443 2222 233444431 1 14566 7777653321 11122356888999999999999999999
Q ss_pred HccccCCcchhhhhhcCCeeEecCCCCCCCcCCCCccccccccCchhhhccchHHHHHHHHHcCCCCCCCCcEEEEEccC
Q 008028 301 ISGEEKGVELDNIIRKTGISGIVNGMDVQEWNPSTDRYINVNYDATTVMNAKPLVKEALQSQLGLPVDRNIPLIGFIGRL 380 (580)
Q Consensus 301 ~~~~~~g~~~~~~~~~~~i~~I~NGvd~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~i~f~Grl 380 (580)
.+ .|++.. ++..+++. | ......+ .. ..+.++|+|+|++
T Consensus 149 ~~---~G~~~~------ki~~~~~~-~-----~~~~~~~------------------------~~--~~~~~~i~yaG~l 187 (339)
T 3rhz_A 149 RD---FGMNVS------KTVVQGMW-D-----HPTQAPM------------------------FP--AGLKREIHFPGNP 187 (339)
T ss_dssp HH---TTCCCS------EEEECCSC-C-----CCCCCCC------------------------CC--CEEEEEEEECSCT
T ss_pred HH---cCCCcC------ceeecCCC-C-----ccCcccc------------------------cc--cCCCcEEEEeCCc
Confidence 87 576533 55433321 1 1110000 00 1244789999999
Q ss_pred ccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEecCC------
Q 008028 381 EEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLVPSR------ 454 (580)
Q Consensus 381 ~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ps~------ 454 (580)
+... .+..+ .++++|+|+|+|+.. +.+ ++.+.+..+.+++..+++.+|+.++...
T Consensus 188 ~k~~-------~L~~l-~~~~~f~ivG~G~~~----------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y 248 (339)
T 3rhz_A 188 ERFS-------FVKEW-KYDIPLKVYTWQNVE----------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEY 248 (339)
T ss_dssp TTCG-------GGGGC-CCSSCEEEEESCCCC----------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHH
T ss_pred chhh-------HHHhC-CCCCeEEEEeCCccc----------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHH
Confidence 8422 22233 368999999999853 244 7999999999999999988899888621
Q ss_pred -CCCccHHHHHHHHcCCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhHHHHHHHH
Q 008028 455 -FEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPALKEMIQN 533 (580)
Q Consensus 455 -~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~~~~~~~~ 533 (580)
...+|.+++|||++|+|||+++.+++.+++.++.+|+.+ + +.++++++|..+. ++++.+|+++
T Consensus 249 ~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~----------~--~~~e~~~~i~~l~----~~~~~~m~~n 312 (339)
T 3rhz_A 249 QSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIV----------K--DVEEAIMKVKNVN----EDEYIELVKN 312 (339)
T ss_dssp HTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEE----------S--SHHHHHHHHHHCC----HHHHHHHHHH
T ss_pred HHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEe----------C--CHHHHHHHHHHhC----HHHHHHHHHH
Confidence 124689999999999999999999999999999999986 4 5788888887753 4567888888
Q ss_pred HH--HhcCCchHHHHHH
Q 008028 534 CM--ALDLSWKEPARLW 548 (580)
Q Consensus 534 ~~--~~~fs~~~~a~~~ 548 (580)
+. .+.+++...+++.
T Consensus 313 a~~~a~~~~~~~f~k~~ 329 (339)
T 3rhz_A 313 VRSFNPILRKGFFTRRL 329 (339)
T ss_dssp HHHHTHHHHTTHHHHHH
T ss_pred HHHHHHHhhccHHHHHH
Confidence 73 3456666655544
No 37
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.56 E-value=4e-13 Score=140.27 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=103.9
Q ss_pred EEEEEccCccccCHHHHHHHHhhhcC-CCeEEEEE-ecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEE
Q 008028 373 LIGFIGRLEEQKGSDILAQAIPKFMG-GNVQIVVL-GTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFML 450 (580)
Q Consensus 373 ~i~f~Grl~~~Kg~~~ll~a~~~l~~-~~v~lii~-G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l 450 (580)
++++.|++...+.-+.+.+++.++.. .++++++. |.+. .+ .+.+...+.+.++.... |..+ +..+|+.||++|
T Consensus 183 ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~--~~-~~~~~~~~~~~~~~v~~-f~~d-m~~~l~~aDlvI 257 (365)
T 3s2u_A 183 LLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQH--AE-ITAERYRTVAVEADVAP-FISD-MAAAYAWADLVI 257 (365)
T ss_dssp EEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTT--HH-HHHHHHHHTTCCCEEES-CCSC-HHHHHHHCSEEE
T ss_pred EEEECCcCCccccchhhHHHHHhcccccceEEEEecCccc--cc-cccceeccccccccccc-chhh-hhhhhccceEEE
Confidence 45566788888888899999988854 45665544 4333 33 33333344554555543 4333 345899999999
Q ss_pred ecCCCCCccHHHHHHHHcCCceEEcCCCCcc--------eeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHHH
Q 008028 451 VPSRFEPCGLIQLHAMRYGTVPIVASTGGLF--------DTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAVA 520 (580)
Q Consensus 451 ~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~--------e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll~ 520 (580)
.-+ -++++.|+|++|+|+|.....+.. +.+.+.+.|+++ +.. +++.++++|.++++
T Consensus 258 ~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l----------~~~~~~~~~L~~~i~~ll~ 323 (365)
T 3s2u_A 258 CRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLL----------PQKSTGAAELAAQLSEVLM 323 (365)
T ss_dssp ECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEEC----------CTTTCCHHHHHHHHHHHHH
T ss_pred ecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEe----------ecCCCCHHHHHHHHHHHHC
Confidence 543 368899999999999987754322 235555678876 433 58999999999999
Q ss_pred hcChhHHHHHHHHHHH--hcCCchHHHHHHHHHH
Q 008028 521 TYGTPALKEMIQNCMA--LDLSWKEPARLWEKML 552 (580)
Q Consensus 521 ~~~~~~~~~~~~~~~~--~~fs~~~~a~~~~~~~ 552 (580)
+ ++.+.+|.+++.+ .....+++++.++++.
T Consensus 324 d--~~~~~~m~~~a~~~~~~~aa~~ia~~i~~la 355 (365)
T 3s2u_A 324 H--PETLRSMADQARSLAKPEATRTVVDACLEVA 355 (365)
T ss_dssp C--THHHHHHHHHHHHTCCTTHHHHHHHHHHHHC
T ss_pred C--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 8 7888888887643 2334445555554443
No 38
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.48 E-value=3.6e-13 Score=143.28 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=109.5
Q ss_pred CCcEEEEEccCccccCHHHHHHHHhhhcC-CCeEE-EEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCC
Q 008028 370 NIPLIGFIGRLEEQKGSDILAQAIPKFMG-GNVQI-VVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGAD 447 (580)
Q Consensus 370 ~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~-~~v~l-ii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aD 447 (580)
+.+++++.|++. .++.+.+.++++.+.+ +++++ +++|.+.. .+.++ +.++++.+.+..+.. .+++.||
T Consensus 232 ~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~--~~~l~----~~~~~v~~~~~~~~~---~~l~~ad 301 (430)
T 2iyf_A 232 EKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVT--PAELG----ELPDNVEVHDWVPQL---AILRQAD 301 (430)
T ss_dssp SEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---C--GGGGC----SCCTTEEEESSCCHH---HHHTTCS
T ss_pred CCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC--hHHhc----cCCCCeEEEecCCHH---HHhhccC
Confidence 346788999998 5665665555555544 47888 46787652 11111 245567776655443 5899999
Q ss_pred EEEecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHHHh
Q 008028 448 FMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAVAT 521 (580)
Q Consensus 448 i~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll~~ 521 (580)
++|..+ -+++++|||++|+|+|++..++ ..+.+.+.+.|+.+ ++. |.++++++|.+++++
T Consensus 302 ~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~~ 367 (430)
T 2iyf_A 302 LFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKL----------ATEEATADLLRETALALVDD 367 (430)
T ss_dssp EEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEEC----------CCC-CCHHHHHHHHHHHHHC
T ss_pred EEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEc----------CCCCCCHHHHHHHHHHHHcC
Confidence 998754 2378999999999999998765 34556677789886 655 889999999999986
Q ss_pred cChhHHHHHHHHH--HHhcCCchHHHHHHHHHHHHH
Q 008028 522 YGTPALKEMIQNC--MALDLSWKEPARLWEKMLLSM 555 (580)
Q Consensus 522 ~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~~l 555 (580)
++.+.++.+.+ +...++++++++.+++++.+.
T Consensus 368 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 368 --PEVARRLRRIQAEMAQEGGTRRAADLIEAELPAR 401 (430)
T ss_dssp --HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC-
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcc
Confidence 55555555443 445678888888888877544
No 39
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.48 E-value=1.1e-13 Score=145.77 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=99.9
Q ss_pred CCcEEEEEccCccc----------cCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHH
Q 008028 370 NIPLIGFIGRLEEQ----------KGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLA 439 (580)
Q Consensus 370 ~~~~i~f~Grl~~~----------Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~ 439 (580)
..+++++.|++... +.+..+++++.++ ++++++++.+.. .+.+. ..+.++.+....+ .
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~---~ 294 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL---GFEVVVAVSDKL--AQTLQ----PLPEGVLAAGQFP---L 294 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGGG---TCEEEECCCC--------------CCTTEEEESCCC---H
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHhC---CCEEEEEeCCcc--hhhhc----cCCCcEEEeCcCC---H
Confidence 34577788999644 4567777777765 789998887652 22222 3456777776553 3
Q ss_pred HHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEc----CCCCcceeEecCceeEEEeecccccccCCcc--cHHHHHH
Q 008028 440 HKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVA----STGGLFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAK 513 (580)
Q Consensus 440 ~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s----~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~ 513 (580)
..+++.||++|. ++.+.+++|||++|+|+|+. +..+..+.+.+.+.|+.+ ++. +.+++++
T Consensus 295 ~~ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~ 360 (398)
T 4fzr_A 295 SAIMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEV----------PWEQAGVESVLA 360 (398)
T ss_dssp HHHGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEEC----------C-------CHHH
T ss_pred HHHHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEec----------CcccCCHHHHHH
Confidence 458999999995 34568899999999999994 444667778888899986 655 7899999
Q ss_pred HHHHHHHhcChhHHHHHHHHH--HHhcCCchHHHHHHH
Q 008028 514 HVNRAVATYGTPALKEMIQNC--MALDLSWKEPARLWE 549 (580)
Q Consensus 514 ~l~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~ 549 (580)
+|.+++++ ++.+.+|.+.+ +....+++++++.++
T Consensus 361 ai~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 361 ACARIRDD--SSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHC--THHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHhC--HHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 99999997 55566665544 556789988887764
No 40
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.36 E-value=7.6e-12 Score=131.75 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=107.6
Q ss_pred CcEEEEEccCccc-cCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEE
Q 008028 371 IPLIGFIGRLEEQ-KGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFM 449 (580)
Q Consensus 371 ~~~i~f~Grl~~~-Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~ 449 (580)
.+++++.|++... ++.+.+.++++.+.+.++++++++++.. .+.+. ..+.++.+....+. ..+++.||++
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~--~~~l~----~~~~~v~~~~~~~~---~~ll~~ad~~ 303 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD--ISPLG----TLPRNVRAVGWTPL---HTLLRTCTAV 303 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSC--CGGGC----SCCTTEEEESSCCH---HHHHTTCSEE
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcC--hhhhc----cCCCcEEEEccCCH---HHHHhhCCEE
Confidence 3577788999665 4666666666666555899999987752 11111 34566777765532 3489999999
Q ss_pred EecCCCCCccHHHHHHHHcCCceEE----cCCCCcc--eeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHHHh
Q 008028 450 LVPSRFEPCGLIQLHAMRYGTVPIV----ASTGGLF--DTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAVAT 521 (580)
Q Consensus 450 l~ps~~E~~g~~~lEAma~G~PvI~----s~~gg~~--e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll~~ 521 (580)
|.. +-+.+++|||++|+|+|+ .+..+.. +.+.+.+.|+.+ ++. +.+.++ +++++
T Consensus 304 v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~----------~~~~~~~~~l~----~ll~~ 365 (398)
T 3oti_A 304 VHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVS----------TSDKVDADLLR----RLIGD 365 (398)
T ss_dssp EEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEEC----------CGGGCCHHHHH----HHHHC
T ss_pred EEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEee----------CCCCCCHHHHH----HHHcC
Confidence 953 445789999999999999 6667778 888888899987 555 455555 77776
Q ss_pred cChhHHHHHHHHH--HHhcCCchHHHHHHHHHH
Q 008028 522 YGTPALKEMIQNC--MALDLSWKEPARLWEKML 552 (580)
Q Consensus 522 ~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~ 552 (580)
++.+.+|.+.+ +....+++++++.+++++
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 366 --ESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp --HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 55555555444 557889999998887664
No 41
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.36 E-value=6.8e-13 Score=139.22 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=107.3
Q ss_pred cEEEEEccCccccCH-HHHHHHHhhhcC-CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEE
Q 008028 372 PLIGFIGRLEEQKGS-DILAQAIPKFMG-GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFM 449 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~-~~ll~a~~~l~~-~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~ 449 (580)
.++++.|++...|+. ..+++++.+..+ ++++++++|.+.. .+.+. ..+.++.+....+.. .+++.||++
T Consensus 220 ~vlv~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~ad~~ 290 (391)
T 3tsa_A 220 RVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEH--RALLT----DLPDNARIAESVPLN---LFLRTCELV 290 (391)
T ss_dssp EEEEECCHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGG--GGGCT----TCCTTEEECCSCCGG---GTGGGCSEE
T ss_pred EEEEEcCCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcc--hhhcc----cCCCCEEEeccCCHH---HHHhhCCEE
Confidence 466667988765443 555555544433 4899999987652 11111 234567766554433 267999999
Q ss_pred EecCCCCCccHHHHHHHHcCCceEEcC----CCCcceeEecCceeEEEeecccccccCCc----ccHHHHHHHHHHHHHh
Q 008028 450 LVPSRFEPCGLIQLHAMRYGTVPIVAS----TGGLFDTVKEGITGFQMRSFHVECDRVDL----ADVAAIAKHVNRAVAT 521 (580)
Q Consensus 450 l~ps~~E~~g~~~lEAma~G~PvI~s~----~gg~~e~i~~~~~G~~~~~~~~~~~~v~~----~d~~~la~~l~~ll~~ 521 (580)
|.. +-+.+++|||++|+|+|+.. ..+..+.+.+.+.|..+ ++ .++++++++|.+++++
T Consensus 291 v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~~~l~~ai~~ll~~ 356 (391)
T 3tsa_A 291 ICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICL----------PDEQAQSDHEQFTDSIATVLGD 356 (391)
T ss_dssp EEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEEC----------CSHHHHTCHHHHHHHHHHHHTC
T ss_pred EeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEec----------CcccccCCHHHHHHHHHHHHcC
Confidence 953 44578999999999999954 34455667778899987 66 6899999999999997
Q ss_pred cChhHHHHHHHHH--HHhcCCchHHHHHHHHHH
Q 008028 522 YGTPALKEMIQNC--MALDLSWKEPARLWEKML 552 (580)
Q Consensus 522 ~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~ 552 (580)
++.+.+|.+.+ +....+++++++.+++++
T Consensus 357 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (391)
T 3tsa_A 357 --TGFAAAAIKLSDEITAMPHPAALVRTLENTA 387 (391)
T ss_dssp --THHHHHHHHHHHHHHTSCCHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55555555443 556788988888777654
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.35 E-value=5.6e-12 Score=132.39 Aligned_cols=195 Identities=17% Similarity=0.115 Sum_probs=132.8
Q ss_pred HHHHH-hcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCC-CCCCcCCCCccccccccCchhhhccchHHH
Q 008028 279 MKAGI-LESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGM-DVQEWNPSTDRYINVNYDATTVMNAKPLVK 356 (580)
Q Consensus 279 ~~~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGv-d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 356 (580)
.+..+ +.+|.+++.|+..++.+.+ .|++.+ +|.++.|.+ |...+.. ....+
T Consensus 139 nR~~~~~~a~~~~~~te~~~~~l~~---~G~~~~------~I~vtGnp~~D~~~~~~------------------~~~~~ 191 (385)
T 4hwg_A 139 NRKIIDHISDVNITLTEHARRYLIA---EGLPAE------LTFKSGSHMPEVLDRFM------------------PKILK 191 (385)
T ss_dssp HHHHHHHHCSEEEESSHHHHHHHHH---TTCCGG------GEEECCCSHHHHHHHHH------------------HHHHH
T ss_pred HHHHHHhhhceeecCCHHHHHHHHH---cCCCcC------cEEEECCchHHHHHHhh------------------hhcch
Confidence 34444 5789999999999999987 687766 788888743 4211100 01124
Q ss_pred HHHHHHcCCCCCCCCcEEEEEccCc---cccCHHHHHHHHhhhcCC-CeEEEEEecCChhhHHHHHHH-H-HHCCCCeeE
Q 008028 357 EALQSQLGLPVDRNIPLIGFIGRLE---EQKGSDILAQAIPKFMGG-NVQIVVLGTGKKPMEQQIEQL-E-IICPEKARG 430 (580)
Q Consensus 357 ~~~~~~~glp~~~~~~~i~f~Grl~---~~Kg~~~ll~a~~~l~~~-~v~lii~G~g~~~~~~~i~~l-~-~~~~~~v~~ 430 (580)
..+++++|++. +..+++..+|.+ ..|++..+++|+.++.+. ++++++... +...+.++++ . .....++.+
T Consensus 192 ~~~~~~lgl~~--~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~--p~~~~~l~~~~~~~~~~~~v~l 267 (385)
T 4hwg_A 192 SDILDKLSLTP--KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTH--PRTKKRLEDLEGFKELGDKIRF 267 (385)
T ss_dssp CCHHHHTTCCT--TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEEC--HHHHHHHHTSGGGGGTGGGEEE
T ss_pred hHHHHHcCCCc--CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECC--hHHHHHHHHHHHHhcCCCCEEE
Confidence 55778889863 335566677754 347899999999988542 688777543 3355555554 2 111235666
Q ss_pred eccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCC-cceeEecCceeEEEeecccccccCCcccHH
Q 008028 431 ITKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG-LFDTVKEGITGFQMRSFHVECDRVDLADVA 509 (580)
Q Consensus 431 ~~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg-~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~ 509 (580)
...+.......+++.||+++.+| |.++.||+++|+|+|+..... ..|.+..| ++.++ . .|.+
T Consensus 268 ~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv----------~-~d~~ 330 (385)
T 4hwg_A 268 LPAFSFTDYVKLQMNAFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDAG-TLIMS----------G-FKAE 330 (385)
T ss_dssp CCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEEC----------C-SSHH
T ss_pred EcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEc----------C-CCHH
Confidence 55555545667999999999666 667899999999999987543 55665544 56653 3 4899
Q ss_pred HHHHHHHHHHHh
Q 008028 510 AIAKHVNRAVAT 521 (580)
Q Consensus 510 ~la~~l~~ll~~ 521 (580)
++++++.+++++
T Consensus 331 ~i~~ai~~ll~d 342 (385)
T 4hwg_A 331 RVLQAVKTITEE 342 (385)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999999987
No 43
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.28 E-value=7.8e-11 Score=123.56 Aligned_cols=157 Identities=16% Similarity=0.043 Sum_probs=104.9
Q ss_pred CCcEEEEEccCcccc--CHHHHHHHHhhhcCCCeEEEE-EecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcC
Q 008028 370 NIPLIGFIGRLEEQK--GSDILAQAIPKFMGGNVQIVV-LGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGA 446 (580)
Q Consensus 370 ~~~~i~f~Grl~~~K--g~~~ll~a~~~l~~~~v~lii-~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 446 (580)
...++++.|+....+ .+..+++++.. .++++++ +|.+.. .+.+. +.+.++.+....+.. .+++.|
T Consensus 231 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~--~~~~~----~~~~~v~~~~~~~~~---~ll~~a 298 (402)
T 3ia7_A 231 APVLLVSLGNQFNEHPEFFRACAQAFAD---TPWHVVMAIGGFLD--PAVLG----PLPPNVEAHQWIPFH---SVLAHA 298 (402)
T ss_dssp CCEEEEECCSCSSCCHHHHHHHHHHHTT---SSCEEEEECCTTSC--GGGGC----SCCTTEEEESCCCHH---HHHTTE
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHHhc---CCcEEEEEeCCcCC--hhhhC----CCCCcEEEecCCCHH---HHHhhC
Confidence 345678888886655 34445555443 3577666 454431 11111 245567776544443 589999
Q ss_pred CEEEecCCCCCccHHHHHHHHcCCceEEcCC-----CCcceeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHH
Q 008028 447 DFMLVPSRFEPCGLIQLHAMRYGTVPIVAST-----GGLFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAV 519 (580)
Q Consensus 447 Di~l~ps~~E~~g~~~lEAma~G~PvI~s~~-----gg~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll 519 (580)
|++|..+ -..+++|||++|+|+|+... .+..+.+.+.+.|..+ ++. +++.++++|.+++
T Consensus 299 d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~~~~ll 364 (402)
T 3ia7_A 299 RACLTHG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVL----------RPDQLEPASIREAVERLA 364 (402)
T ss_dssp EEEEECC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEEC----------CGGGCSHHHHHHHHHHHH
T ss_pred CEEEECC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEc----------cCCCCCHHHHHHHHHHHH
Confidence 9999664 23678999999999995543 4556666777888886 655 8999999999999
Q ss_pred HhcChhHHHHHHHHH--HHhcCCchHHHHHHHHHHHH
Q 008028 520 ATYGTPALKEMIQNC--MALDLSWKEPARLWEKMLLS 554 (580)
Q Consensus 520 ~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~~ 554 (580)
++ ++.+.++.+.+ +....+++++++.+++++.+
T Consensus 365 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 365 AD--SAVRERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HC--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cC--HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 97 54444444433 45678888888888887754
No 44
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.22 E-value=8e-10 Score=115.47 Aligned_cols=153 Identities=12% Similarity=0.083 Sum_probs=104.6
Q ss_pred CcEEEEEccCccc-------cCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH
Q 008028 371 IPLIGFIGRLEEQ-------KGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII 443 (580)
Q Consensus 371 ~~~i~f~Grl~~~-------Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~ 443 (580)
..++++.|++... +.+..+++++.++ ++++++++.+. ..+.++. .++++.+ ...+. ..++
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~--~~~~l~~----~~~~v~~-~~~~~---~~~l 277 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---DVELIVAAPDT--VAEALRA----EVPQARV-GWTPL---DVVA 277 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---TCEEEEECCHH--HHHHHHH----HCTTSEE-ECCCH---HHHG
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC---CcEEEEEeCCC--CHHhhCC----CCCceEE-cCCCH---HHHH
Confidence 3578889999865 6677888888765 78888875432 2222322 3456766 54442 3478
Q ss_pred hcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecCceeEEEeecccccccCCcc--cHHHHHHHHHH
Q 008028 444 AGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNR 517 (580)
Q Consensus 444 ~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ 517 (580)
+.||++|..+ -+++++|||++|+|+|+...++ ..+.+.+.+.|+.+ ++. +.++++++|.+
T Consensus 278 ~~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~----------~~~~~~~~~l~~~i~~ 343 (384)
T 2p6p_A 278 PTCDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIAL----------LPGEDSTEAIADSCQE 343 (384)
T ss_dssp GGCSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEEC----------CTTCCCHHHHHHHHHH
T ss_pred hhCCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEec----------CcCCCCHHHHHHHHHH
Confidence 9999999763 3468999999999999998753 55556666788876 543 78999999999
Q ss_pred HHHhcChhHHHHHHHHH--HHhcCCchHHHHHHHHHH
Q 008028 518 AVATYGTPALKEMIQNC--MALDLSWKEPARLWEKML 552 (580)
Q Consensus 518 ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~ 552 (580)
++++ ++.+.++.+.+ +...-..+++++.+++++
T Consensus 344 ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 344 LQAK--DTYARRAQDLSREISGMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHC--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHcC--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9996 55555554443 344445666665555443
No 45
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.18 E-value=2.4e-10 Score=120.72 Aligned_cols=156 Identities=13% Similarity=0.028 Sum_probs=101.9
Q ss_pred CCcEEEEEccCcccc--CHHHHHHHHhhhcCCCeEEEE-EecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcC
Q 008028 370 NIPLIGFIGRLEEQK--GSDILAQAIPKFMGGNVQIVV-LGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGA 446 (580)
Q Consensus 370 ~~~~i~f~Grl~~~K--g~~~ll~a~~~l~~~~v~lii-~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 446 (580)
...++++.|+..... .+..+++++..+ ++++++ +|.+.. .+.+. ..+.++.+....+.. .+++.|
T Consensus 247 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~--~~~l~----~~~~~v~~~~~~~~~---~ll~~a 314 (415)
T 3rsc_A 247 LPVVLVSLGTTFNDRPGFFRDCARAFDGQ---PWHVVMTLGGQVD--PAALG----DLPPNVEAHRWVPHV---KVLEQA 314 (415)
T ss_dssp CCEEEEECTTTSCCCHHHHHHHHHHHTTS---SCEEEEECTTTSC--GGGGC----CCCTTEEEESCCCHH---HHHHHE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHhcC---CcEEEEEeCCCCC--hHHhc----CCCCcEEEEecCCHH---HHHhhC
Confidence 335677888875433 244455554443 588877 565431 11111 235567776544433 589999
Q ss_pred CEEEecCCCCCccHHHHHHHHcCCceEEcC----CCCcceeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHHH
Q 008028 447 DFMLVPSRFEPCGLIQLHAMRYGTVPIVAS----TGGLFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAVA 520 (580)
Q Consensus 447 Di~l~ps~~E~~g~~~lEAma~G~PvI~s~----~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll~ 520 (580)
|++|..+ -..+++|||++|+|+|+.. .....+.+.+.+.|..+ +.. +.+.++++|.++++
T Consensus 315 d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~ 380 (415)
T 3rsc_A 315 TVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVL----------PGEKADGDTLLAAVGAVAA 380 (415)
T ss_dssp EEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEEC----------CGGGCCHHHHHHHHHHHHT
T ss_pred CEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEc----------ccCCCCHHHHHHHHHHHHc
Confidence 9999654 2367899999999999954 33455566666788876 554 88999999999999
Q ss_pred hcChhHHHHHHHHH--HHhcCCchHHHHHHHHHHH
Q 008028 521 TYGTPALKEMIQNC--MALDLSWKEPARLWEKMLL 553 (580)
Q Consensus 521 ~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~ 553 (580)
+ ++.+..+.+.+ +....+++++++.+++++.
T Consensus 381 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 381 D--PALLARVEAMRGHVRRAGGAARAADAVEAYLA 413 (415)
T ss_dssp C--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 7 55445544433 4566788888888777664
No 46
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.81 E-value=4e-08 Score=102.84 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=87.0
Q ss_pred cEEEEEccCccccC-HHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEE
Q 008028 372 PLIGFIGRLEEQKG-SDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFML 450 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg-~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l 450 (580)
.+++..|++...++ .+.+.++++.+.+.+.++++.+.+...- .....++++....+.+.. .++..||++|
T Consensus 239 ~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~------~~~~~~~~v~~~~~~p~~---~lL~~~~~~v 309 (400)
T 4amg_A 239 RIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLA------LLGELPANVRVVEWIPLG---ALLETCDAII 309 (400)
T ss_dssp EEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCC------CCCCCCTTEEEECCCCHH---HHHTTCSEEE
T ss_pred EEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCcccc------ccccCCCCEEEEeecCHH---HHhhhhhhee
Confidence 45666777765443 3455555555555577877776543100 011345567665555433 3789999988
Q ss_pred ecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhcChhH
Q 008028 451 VPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATYGTPA 526 (580)
Q Consensus 451 ~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~~~~~ 526 (580)
.- +-..+++|||++|+|+|+....+ +.+.+.+.+.|..+ +. .+..+++|.++|++ +..
T Consensus 310 ~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l----------~~--~~~~~~al~~lL~d--~~~ 371 (400)
T 4amg_A 310 HH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA----------EA--GSLGAEQCRRLLDD--AGL 371 (400)
T ss_dssp EC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEEC----------CT--TTCSHHHHHHHHHC--HHH
T ss_pred cc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEc----------CC--CCchHHHHHHHHcC--HHH
Confidence 43 34568999999999999866543 33444455567754 43 33467889999996 332
Q ss_pred HHHHH--HHHHHhcCCchHHHHHHHH
Q 008028 527 LKEMI--QNCMALDLSWKEPARLWEK 550 (580)
Q Consensus 527 ~~~~~--~~~~~~~fs~~~~a~~~~~ 550 (580)
+..+. ++.++..-+....++.+++
T Consensus 372 r~~a~~l~~~~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 372 REAALRVRQEMSEMPPPAETAAXLVA 397 (400)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22221 1223344455556655544
No 47
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.78 E-value=4.2e-08 Score=106.90 Aligned_cols=175 Identities=13% Similarity=0.130 Sum_probs=117.4
Q ss_pred HcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC--CCeEEE--EEecCC---hhhHHHHHHHHHHCCCCeeEeccC
Q 008028 362 QLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG--GNVQIV--VLGTGK---KPMEQQIEQLEIICPEKARGITKF 434 (580)
Q Consensus 362 ~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~--~~v~li--i~G~g~---~~~~~~i~~l~~~~~~~v~~~~~~ 434 (580)
.+++|.+.+.++|+.++|+ .|..+.+++++.++.+ ++..++ ++|.+. ..+.+++.+.... +++.+.+..
T Consensus 432 ~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~--~Rv~F~g~~ 507 (631)
T 3q3e_A 432 DYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLG--DSATAHPHS 507 (631)
T ss_dssp CCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHG--GGEEEECCC
T ss_pred cccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCC--ccEEEcCCC
Confidence 4566644346788888875 7999999999998866 555553 367432 2344444444443 468888777
Q ss_pred ChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEe------cCceeEEEeecccccccCCcccH
Q 008028 435 STPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVK------EGITGFQMRSFHVECDRVDLADV 508 (580)
Q Consensus 435 ~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~------~~~~G~~~~~~~~~~~~v~~~d~ 508 (580)
+.......++.+|++|.|+.+.+ |++.+|||+||+|||+...+++..-+. -|-.+|++ ..|.
T Consensus 508 p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LI-----------A~d~ 575 (631)
T 3q3e_A 508 PYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLI-----------ANTV 575 (631)
T ss_dssp CHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGE-----------ESSH
T ss_pred CHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCccee-----------cCCH
Confidence 76666678999999999998765 999999999999999977665544332 13333311 2578
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHH
Q 008028 509 AAIAKHVNRAVATYGTPALKEMIQNCMAL-----DLSWKEPARLWEKMLLSME 556 (580)
Q Consensus 509 ~~la~~l~~ll~~~~~~~~~~~~~~~~~~-----~fs~~~~a~~~~~~~~~l~ 556 (580)
+++++...++..+ ++.+.++.++.... -|+ ..+++|++.|+++.
T Consensus 576 eeYv~~Av~La~D--~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~ 624 (631)
T 3q3e_A 576 DEYVERAVRLAEN--HQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKL 624 (631)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHH
Confidence 8999999999997 66666665554332 233 33455555555443
No 48
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.66 E-value=8.8e-08 Score=88.01 Aligned_cols=122 Identities=10% Similarity=0.076 Sum_probs=92.1
Q ss_pred CcEEEEEccCc---cccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH--hc
Q 008028 371 IPLIGFIGRLE---EQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII--AG 445 (580)
Q Consensus 371 ~~~i~f~Grl~---~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~--~~ 445 (580)
..++++.|++. +.|.+..+++++.++ +.++++++++... ...+.++.+....+... ++ +.
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~~~---------~~~~~~v~~~~~~~~~~---~l~~~~ 86 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI---PQKVLWRFDGNKP---------DTLGLNTRLYKWIPQND---LLGHPK 86 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS---SSEEEEECCSSCC---------TTCCTTEEEESSCCHHH---HHTSTT
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC---CCeEEEEECCcCc---------ccCCCcEEEecCCCHHH---HhcCCC
Confidence 45788899985 678888899988765 5788888765421 12355677776555532 45 89
Q ss_pred CCEEEecCCCCCccHHHHHHHHcCCceEEcCCC----CcceeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHH
Q 008028 446 ADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTG----GLFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAV 519 (580)
Q Consensus 446 aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~g----g~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll 519 (580)
||++|.. +-+.+++|||++|+|+|+.... +..+.+.+.+.|+.+ ++. +.++++++|.+++
T Consensus 87 ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll 152 (170)
T 2o6l_A 87 TRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRV----------DFNTMSSTDLLNALKRVI 152 (170)
T ss_dssp EEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEEC----------CTTTCCHHHHHHHHHHHH
T ss_pred cCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEe----------ccccCCHHHHHHHHHHHH
Confidence 9999964 4468999999999999999864 345556677889886 555 8899999999999
Q ss_pred Hh
Q 008028 520 AT 521 (580)
Q Consensus 520 ~~ 521 (580)
++
T Consensus 153 ~~ 154 (170)
T 2o6l_A 153 ND 154 (170)
T ss_dssp HC
T ss_pred cC
Confidence 86
No 49
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.64 E-value=3.8e-07 Score=96.02 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=84.0
Q ss_pred CcEEEEEccCc-cccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEE
Q 008028 371 IPLIGFIGRLE-EQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFM 449 (580)
Q Consensus 371 ~~~i~f~Grl~-~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~ 449 (580)
.++++..|++. ..+.+..+++++.++ ++++++.++... ... ...+.++......+. ..++..||++
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~---~~~vv~~~g~~~-~~~------~~~~~~v~~~~~~~~---~~ll~~~d~~ 288 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQ---GRRVVLSSGWAG-LGR------IDEGDDCLVVGEVNH---QVLFGRVAAV 288 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHT---TCCEEEECTTTT-CCC------SSCCTTEEEESSCCH---HHHGGGSSEE
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhC---CCEEEEEeCCcc-ccc------ccCCCCEEEecCCCH---HHHHhhCcEE
Confidence 45777889987 677788888888776 677777654331 100 123456766655443 3478999999
Q ss_pred EecCCCCCccHHHHHHHHcCCceEEcCCCCc----ceeEecCceeEEEeecccccccCCc--ccHHHHHHHHHHHHH
Q 008028 450 LVPSRFEPCGLIQLHAMRYGTVPIVASTGGL----FDTVKEGITGFQMRSFHVECDRVDL--ADVAAIAKHVNRAVA 520 (580)
Q Consensus 450 l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~----~e~i~~~~~G~~~~~~~~~~~~v~~--~d~~~la~~l~~ll~ 520 (580)
|..+ -..++.||+++|+|+|+....+- .+.+.+.+.|..+ +. .+.+.++++|.++++
T Consensus 289 v~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l----------~~~~~~~~~l~~ai~~ll~ 351 (404)
T 3h4t_A 289 VHHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAH----------DGPTPTVESLSAALATALT 351 (404)
T ss_dssp EECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------SSSSCCHHHHHHHHHHHTS
T ss_pred EECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEecc----------CcCCCCHHHHHHHHHHHhC
Confidence 9553 23688999999999999865442 2234455677765 33 378999999999986
No 50
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.41 E-value=6.3e-07 Score=95.39 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=104.3
Q ss_pred cEEEEEccCcc-----ccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcC
Q 008028 372 PLIGFIGRLEE-----QKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGA 446 (580)
Q Consensus 372 ~~i~f~Grl~~-----~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 446 (580)
.++++.|++.. .|.+..+++++..+ ++++++++.+.. . +.+. ..+.++.+....+. ..++..|
T Consensus 269 ~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~-~-~~l~----~~~~~v~~~~~~~~---~~ll~~a 336 (441)
T 2yjn_A 269 RVCLTLGISSRENSIGQVSIEELLGAVGDV---DAEIIATFDAQQ-L-EGVA----NIPDNVRTVGFVPM---HALLPTC 336 (441)
T ss_dssp EEEEEC----------CCSTTTTHHHHHTS---SSEEEECCCTTT-T-SSCS----SCCSSEEECCSCCH---HHHGGGC
T ss_pred EEEEECCCCcccccChHHHHHHHHHHHHcC---CCEEEEEECCcc-h-hhhc----cCCCCEEEecCCCH---HHHHhhC
Confidence 47788899875 48888999998776 688888766542 1 1111 24556766655443 3478999
Q ss_pred CEEEecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHHH
Q 008028 447 DFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAVA 520 (580)
Q Consensus 447 Di~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll~ 520 (580)
|++|.. +-+.+++|||++|+|+|+....+ ..+.+.+.+.|+.+ ++. +.+.++++|.++++
T Consensus 337 d~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~ 402 (441)
T 2yjn_A 337 AATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIAL----------PVPELTPDQLRESVKRVLD 402 (441)
T ss_dssp SEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEEC----------CTTTCCHHHHHHHHHHHHH
T ss_pred CEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEc----------ccccCCHHHHHHHHHHHhc
Confidence 999963 34578999999999999998743 44556666788876 544 88999999999998
Q ss_pred hcChhHHHHHHHHH--HHhcCCchHHHHHHHHHH
Q 008028 521 TYGTPALKEMIQNC--MALDLSWKEPARLWEKML 552 (580)
Q Consensus 521 ~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~ 552 (580)
+ ++.+.++.+.+ +......+++++.+++++
T Consensus 403 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 434 (441)
T 2yjn_A 403 D--PAHRAGAARMRDDMLAEPSPAEVVGICEELA 434 (441)
T ss_dssp C--HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6 55555554433 455677778877776654
No 51
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=97.98 E-value=6.7e-05 Score=79.01 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=96.8
Q ss_pred CCcEEEEEccCccccCHHHHHHHHhhhcCCCeEEE-EEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCE
Q 008028 370 NIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIV-VLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADF 448 (580)
Q Consensus 370 ~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~li-i~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi 448 (580)
...++++.|+.. .+..+.+.+.++.+.+.+++++ ++|.+... +.+. ..+.++......+.. .+++.||+
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~--~~~~----~~~~~v~~~~~~~~~---~~l~~~d~ 324 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVDGLDWHVVLSVGRFVDP--ADLG----EVPPNVEVHQWVPQL---DILTKASA 324 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHTTCSSEEEEECCTTSCG--GGGC----SCCTTEEEESSCCHH---HHHTTCSE
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHhcCCcEEEEEECCcCCh--HHhc----cCCCCeEEecCCCHH---HHHhhCCE
Confidence 345677788886 3344444444444444567875 45765421 1111 245567666544433 48999999
Q ss_pred EEecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecCceeEEEeecccccccCCcc--cHHHHHHHHHHHHHhc
Q 008028 449 MLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLA--DVAAIAKHVNRAVATY 522 (580)
Q Consensus 449 ~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~--d~~~la~~l~~ll~~~ 522 (580)
+|..+ -.++++||+++|+|+|+....+ ..+.+.+.+.|+.+ +.. +.++++++|.+++++
T Consensus 325 ~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~ll~~- 389 (424)
T 2iya_A 325 FITHA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHI----------PRDQVTAEKLREAVLAVASD- 389 (424)
T ss_dssp EEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEEC----------CGGGCCHHHHHHHHHHHHHC-
T ss_pred EEECC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEc----------CcCCCCHHHHHHHHHHHHcC-
Confidence 88642 2378999999999999998643 33445566778875 544 789999999999986
Q ss_pred ChhHHHHHHHHH--HHhcCCchHHHHHHHHHH
Q 008028 523 GTPALKEMIQNC--MALDLSWKEPARLWEKML 552 (580)
Q Consensus 523 ~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~ 552 (580)
++.+.++.+.+ +......++.++.+++++
T Consensus 390 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 390 -PGVAERLAAVRQEIREAGGARAAADILEGIL 420 (424)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44333433322 334445555665555543
No 52
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.95 E-value=3.1e-05 Score=81.54 Aligned_cols=155 Identities=13% Similarity=0.035 Sum_probs=101.6
Q ss_pred CcEEEEEccC-ccccCHHHHHHHHhhhcCCCeEEEEE-ecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCE
Q 008028 371 IPLIGFIGRL-EEQKGSDILAQAIPKFMGGNVQIVVL-GTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADF 448 (580)
Q Consensus 371 ~~~i~f~Grl-~~~Kg~~~ll~a~~~l~~~~v~lii~-G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi 448 (580)
..++++.|++ ...+..+.++++++++ +.+++++ |.+.... ...+.++.+....+.. .++..||+
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~~--------~~~~~~v~~~~~~~~~---~~l~~~d~ 304 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH---GRRVILSRGWADLVL--------PDDGADCFAIGEVNHQ---VLFGRVAA 304 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT---TCCEEECTTCTTCCC--------SSCGGGEEECSSCCHH---HHGGGSSE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC---CCeEEEEeCCCcccc--------cCCCCCEEEeCcCChH---HHHhhCCE
Confidence 3578888998 4888889999999876 4566665 6654211 1233456665554443 36899999
Q ss_pred EEecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecCceeEEEeecccccccCCc--ccHHHHHHHHHHHHHhc
Q 008028 449 MLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEGITGFQMRSFHVECDRVDL--ADVAAIAKHVNRAVATY 522 (580)
Q Consensus 449 ~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~--~d~~~la~~l~~ll~~~ 522 (580)
+|..+ -..+++|||++|+|+|+....+ ..+.+.+.+.|+.+ +. .+.++++++|.++ ++
T Consensus 305 ~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~----------~~~~~~~~~l~~~i~~l-~~- 368 (415)
T 1iir_A 305 VIHHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAH----------DGPIPTFDSLSAALATA-LT- 368 (415)
T ss_dssp EEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEEC----------SSSSCCHHHHHHHHHHH-TS-
T ss_pred EEeCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccC----------CcCCCCHHHHHHHHHHH-cC-
Confidence 99642 2369999999999999987654 34455566678875 43 4789999999998 65
Q ss_pred ChhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Q 008028 523 GTPALKEMIQNCMALDLSWKEPARLWEKMLLSMEVA 558 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~~ 558 (580)
++.+.++.+. ++.+....-+++..+.+++++..
T Consensus 369 -~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 369 -PETHARATAV--AGTIRTDGAAVAARLLLDAVSRE 401 (415)
T ss_dssp -HHHHHHHHHH--HHHSCSCHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHH--HHHHhhcChHHHHHHHHHHHHhc
Confidence 4433333332 23344555666666666666643
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.71 E-value=0.00092 Score=75.46 Aligned_cols=178 Identities=15% Similarity=0.001 Sum_probs=118.2
Q ss_pred HHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcC--CCeEEEEEecCChhhHHHHHHHHHHCC---CCeeEeccC
Q 008028 360 QSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMG--GNVQIVVLGTGKKPMEQQIEQLEIICP---EKARGITKF 434 (580)
Q Consensus 360 ~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~--~~v~lii~G~g~~~~~~~i~~l~~~~~---~~v~~~~~~ 434 (580)
|..+|||. +.++|+.+.++ +|=-+..++.+.++.+ ++.+|++..... ..++.+.+...+.+ ++++|....
T Consensus 514 R~~~gLp~--~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~-~~~~~l~~~~~~~gi~~~r~~f~~~~ 588 (723)
T 4gyw_A 514 RSQYGLPE--DAIVYCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPA-VGEPNIQQYAQNMGLPQNRIIFSPVA 588 (723)
T ss_dssp GGGGTCCT--TSEEEECCSCG--GGCCHHHHHHHHHHHHHCSSEEEEEEETTG-GGHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred hhhcCCCC--CCEEEEeCCcc--ccCCHHHHHHHHHHHHhCCCCeEEEEeCcH-HHHHHHHHHHHhcCCCcCeEEECCCC
Confidence 66788874 44556555554 7777788888877755 899998887654 23455555555543 468887766
Q ss_pred ChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEec------CceeEEEeecccccccCCcccH
Q 008028 435 STPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKE------GITGFQMRSFHVECDRVDLADV 508 (580)
Q Consensus 435 ~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~------~~~G~~~~~~~~~~~~v~~~d~ 508 (580)
+...-...+..+|++|=|..+ +-|++.+||+.+|+|||+-....+..=+.. |-.-| -..|.
T Consensus 589 ~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~------------ia~~~ 655 (723)
T 4gyw_A 589 PKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLEL------------IAKNR 655 (723)
T ss_dssp CHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGG------------BCSSH
T ss_pred CHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCccc------------ccCCH
Confidence 655555689999999988766 458999999999999888663322211100 11111 13567
Q ss_pred HHHHHHHHHHHHhcChhHHHHHH---HHHHHh--cCCchHHHHHHHHHHHHHHh
Q 008028 509 AAIAKHVNRAVATYGTPALKEMI---QNCMAL--DLSWKEPARLWEKMLLSMEV 557 (580)
Q Consensus 509 ~~la~~l~~ll~~~~~~~~~~~~---~~~~~~--~fs~~~~a~~~~~~~~~l~~ 557 (580)
++..+.-.++..+ .+.+.++. ++.+.. -|+.++.++++++.|.++..
T Consensus 656 ~~Y~~~a~~la~d--~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~ 707 (723)
T 4gyw_A 656 QEYEDIAVKLGTD--LEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWE 707 (723)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHH
Confidence 7777777777776 44433332 222222 58999999999999998875
No 54
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.61 E-value=0.00023 Score=74.71 Aligned_cols=155 Identities=9% Similarity=0.001 Sum_probs=97.2
Q ss_pred CcEEEEEccCc---cccCHHHHHHHHhhhcCCCeEEEEE-ecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcC
Q 008028 371 IPLIGFIGRLE---EQKGSDILAQAIPKFMGGNVQIVVL-GTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGA 446 (580)
Q Consensus 371 ~~~i~f~Grl~---~~Kg~~~ll~a~~~l~~~~v~lii~-G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~a 446 (580)
..++++.|++. ..+..+.++++++.+ +++++++ |.+.... ...+.++......+. ..++..|
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~~~--------~~~~~~v~~~~~~~~---~~ll~~~ 303 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---GRRVILSRGWTELVL--------PDDRDDCFAIDEVNF---QALFRRV 303 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---TCCEEEECTTTTCCC--------SCCCTTEEEESSCCH---HHHGGGS
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---CCeEEEEeCCccccc--------cCCCCCEEEeccCCh---HHHhccC
Confidence 35778889984 567788888888776 5677665 6554211 234556766655543 3478999
Q ss_pred CEEEecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHhc
Q 008028 447 DFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVATY 522 (580)
Q Consensus 447 Di~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~~ 522 (580)
|++|.- +-..+++||+++|+|+|+....+ ..+.+.+.+.|..+. .+..+.+.++++|.++ ++
T Consensus 304 d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~--------~~~~~~~~l~~~i~~l-~~- 369 (416)
T 1rrv_A 304 AAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHD--------GPTPTFESLSAALTTV-LA- 369 (416)
T ss_dssp SEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECS--------SSCCCHHHHHHHHHHH-TS-
T ss_pred CEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCC--------CCCCCHHHHHHHHHHh-hC-
Confidence 999963 33469999999999999977543 333455566777651 0225789999999998 65
Q ss_pred ChhHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHh
Q 008028 523 GTPALKEMIQNCMALDLSWKEPARLWEKML-LSMEV 557 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~-~~l~~ 557 (580)
++.+.++.+. ++.+....-+ +..+.+ +.+..
T Consensus 370 -~~~~~~~~~~--~~~~~~~~~~-~~~~~i~e~~~~ 401 (416)
T 1rrv_A 370 -PETRARAEAV--AGMVLTDGAA-AAADLVLAAVGR 401 (416)
T ss_dssp -HHHHHHHHHH--TTTCCCCHHH-HHHHHHHHHHHC
T ss_pred -HHHHHHHHHH--HHHHhhcCcH-HHHHHHHHHHhc
Confidence 4433333332 2223223333 445555 55553
No 55
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=95.69 E-value=0.052 Score=54.94 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=74.0
Q ss_pred HHHHHHHcCCCCCCCCcEEEEEcc-CccccCHH--HHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCC----CCe
Q 008028 356 KEALQSQLGLPVDRNIPLIGFIGR-LEEQKGSD--ILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICP----EKA 428 (580)
Q Consensus 356 ~~~~~~~~glp~~~~~~~i~f~Gr-l~~~Kg~~--~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~----~~v 428 (580)
.+.+++.++++.. ...+++..|. ..+.|.+. .+.++++.|.+.++++++.|...+ .+..+++....+ .++
T Consensus 167 ~~~~~~~~~~~~~-~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e--~~~~~~i~~~~~~~~~~~~ 243 (348)
T 1psw_A 167 KSYTCNQFSLSSE-RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKD--HEAGNEILAALNTEQQAWC 243 (348)
T ss_dssp HHHHHHHTTCCSS-SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGG--HHHHHHHHTTSCHHHHTTE
T ss_pred HHHHHHHhCCCCC-CcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhh--HHHHHHHHHhhhhccccce
Confidence 4566777787422 2234555665 55777765 888888888666899999886542 344455544332 134
Q ss_pred eEe-ccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcC
Q 008028 429 RGI-TKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVAS 476 (580)
Q Consensus 429 ~~~-~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~ 476 (580)
..+ +..+-.+...+++.||++|-+. .|..-+ |.++|+|+|+--
T Consensus 244 ~~l~g~~sl~e~~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~lf 287 (348)
T 1psw_A 244 RNLAGETQLDQAVILIAACKAIVTND----SGLMHV-AAALNRPLVALY 287 (348)
T ss_dssp EECTTTSCHHHHHHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEEE
T ss_pred EeccCcCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEEE
Confidence 333 3445566778999999999775 466655 899999987743
No 56
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=94.66 E-value=0.15 Score=50.41 Aligned_cols=93 Identities=9% Similarity=0.059 Sum_probs=60.5
Q ss_pred cEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEEEe
Q 008028 372 PLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFMLV 451 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~l~ 451 (580)
.++++.|..+...-...+++++... .. -.+|.|.+.+ ..+++++...+.+ ++... .|..+ +..+|+.||++|.
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~~--~~-i~vv~G~~~~-~~~~l~~~~~~~~-~v~v~-~~~~~-m~~~m~~aDlvI~ 231 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPKT--KI-ISIATSSSNP-NLKKLQKFAKLHN-NIRLF-IDHEN-IAKLMNESNKLII 231 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCTT--SC-EEEEECTTCT-THHHHHHHHHTCS-SEEEE-ESCSC-HHHHHHTEEEEEE
T ss_pred eEEEEECCCchhhHHHHHHHHhhcC--CC-EEEEECCCch-HHHHHHHHHhhCC-CEEEE-eCHHH-HHHHHHHCCEEEE
Confidence 3566778766554444566666543 22 3456687765 4555666555444 45544 34444 4459999999997
Q ss_pred cCCCCCccHHHHHHHHcCCceEEcC
Q 008028 452 PSRFEPCGLIQLHAMRYGTVPIVAS 476 (580)
Q Consensus 452 ps~~E~~g~~~lEAma~G~PvI~s~ 476 (580)
+ .|+++.|++++|+|.|.-.
T Consensus 232 ~-----gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 232 S-----ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp E-----SSHHHHHHHHTTCCEEEEC
T ss_pred C-----CcHHHHHHHHcCCCEEEEe
Confidence 3 4789999999999988765
No 57
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=93.38 E-value=0.58 Score=52.57 Aligned_cols=230 Identities=11% Similarity=0.088 Sum_probs=119.2
Q ss_pred HhcCceeEeeCHHHHHHHHccccCCcchhhhhhcCCeeEecCCCCCC-C-cCCCCccccccccCchhhhccchHHHHHHH
Q 008028 283 ILESDRVLTVSPHYAKELISGEEKGVELDNIIRKTGISGIVNGMDVQ-E-WNPSTDRYINVNYDATTVMNAKPLVKEALQ 360 (580)
Q Consensus 283 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~~I~NGvd~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 360 (580)
....|.+++.|+...+.+.+. ++.+.+ .++.-|..-. . ++.. .....++.++
T Consensus 476 ~~~~D~~~~~s~~~~~~~~~~--f~~~~~--------~i~~~G~PR~D~l~~~~----------------~~~~~~~~~~ 529 (729)
T 3l7i_A 476 TSRWDYLISPNRYSTEIFRSA--FWMDEE--------RILEIGYPRNDVLVNRA----------------NDQEYLDEIR 529 (729)
T ss_dssp HTTCSEEEESSHHHHHHHHHH--TCCCGG--------GEEESCCGGGHHHHHST----------------TCHHHHHHHH
T ss_pred hccCCEEEeCCHHHHHHHHHH--hCCCcc--------eEEEcCCCchHHHhccc----------------chHHHHHHHH
Confidence 345799999999988888763 344322 3445555311 1 1111 1122356788
Q ss_pred HHcCCCCCCCCcEEEEEccCcccc----C-----HHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEe
Q 008028 361 SQLGLPVDRNIPLIGFIGRLEEQK----G-----SDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGI 431 (580)
Q Consensus 361 ~~~glp~~~~~~~i~f~Grl~~~K----g-----~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~ 431 (580)
++++++ +++++|+|+-.+.... + ...-++.+.+....+..+++-. .+.+...+. + ..+.+.+...
T Consensus 530 ~~~~~~--~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~--Hp~~~~~~~-~-~~~~~~~~~~ 603 (729)
T 3l7i_A 530 THLNLP--SDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRM--HYLISNALD-L-SGYENFAIDV 603 (729)
T ss_dssp HHTTCC--SSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECC--CHHHHTTCC-C-TTCTTTEEEC
T ss_pred HHhCCC--CCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcCCCeEEEEec--Ccchhcccc-c-cccCCcEEeC
Confidence 889986 4668999998776531 1 1122333333333567666633 221111110 0 1223334444
Q ss_pred ccCChHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEecCceeEEEeecccccccCCcccHHHH
Q 008028 432 TKFSTPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAI 511 (580)
Q Consensus 432 ~~~~~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~l 511 (580)
..+. ....++..||++|. -+.-+++|++..++|+|...-+- .+. .+...|+.+. |..+..-.-..+.+++
T Consensus 604 ~~~~--di~~ll~~aD~lIT-----DySSv~fD~~~l~kPiif~~~D~-~~Y-~~~~rg~y~d-~~~~~pg~~~~~~~eL 673 (729)
T 3l7i_A 604 SNYN--DVSELFLISDCLIT-----DYSSVMFDYGILKRPQFFFAYDI-DKY-DKGLRGFYMN-YMEDLPGPIYTEPYGL 673 (729)
T ss_dssp TTCS--CHHHHHHTCSEEEE-----SSCTHHHHHGGGCCCEEEECTTT-TTT-TSSCCSBSSC-TTSSSSSCEESSHHHH
T ss_pred CCCc--CHHHHHHHhCEEEe-----echHHHHhHHhhCCCEEEecCCH-HHH-hhccCCcccC-hhHhCCCCeECCHHHH
Confidence 4332 34458999999883 26778999999999999885321 111 1112343321 1100000012678899
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHH
Q 008028 512 AKHVNRAVATYGTPALKEMIQNCMALDLSWK--EPARLWEKMLLSME 556 (580)
Q Consensus 512 a~~l~~ll~~~~~~~~~~~~~~~~~~~fs~~--~~a~~~~~~~~~l~ 556 (580)
.++|...... .+.+.+..++...+.+.++ ..+++..+.+.+..
T Consensus 674 ~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~ 718 (729)
T 3l7i_A 674 AKELKNLDKV--QQQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDI 718 (729)
T ss_dssp HHHHTTHHHH--HHHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhcc--chhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcC
Confidence 9998887663 2333333333333333332 45555555544433
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=92.78 E-value=0.71 Score=48.71 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=75.4
Q ss_pred cEEEEEccCccc--cCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEE
Q 008028 372 PLIGFIGRLEEQ--KGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFM 449 (580)
Q Consensus 372 ~~i~f~Grl~~~--Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~ 449 (580)
.+++..|..... .-+..++++++.. +.+++.+-.... ....-..+..+.++++....+.+. . .+++.+++.
T Consensus 275 vVyvsfGS~~~~~~~~~~el~~~l~~~---~~~flw~~~~~~-~~~lp~~~~~~~~~~~~vv~w~Pq-~--~vL~h~~v~ 347 (454)
T 3hbf_A 275 VVYISFGSVVTPPPHELTALAESLEEC---GFPFIWSFRGDP-KEKLPKGFLERTKTKGKIVAWAPQ-V--EILKHSSVG 347 (454)
T ss_dssp EEEEECCSSCCCCHHHHHHHHHHHHHH---CCCEEEECCSCH-HHHSCTTHHHHTTTTEEEESSCCH-H--HHHHSTTEE
T ss_pred eEEEecCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCcc-hhcCCHhHHhhcCCceEEEeeCCH-H--HHHhhcCcC
Confidence 355666766532 2244455555443 567666543321 111111222334455666544333 2 489999965
Q ss_pred EecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecC-ceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 450 LVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEG-ITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 450 l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~-~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
++-++ +--.+.+||+++|+|.|+--..+ ....+.+. +.|..+. . ..-+.++++++|.+++++
T Consensus 348 ~fvtH--~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~---~-----~~~~~~~l~~av~~ll~~ 414 (454)
T 3hbf_A 348 VFLTH--SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD---N-----GVLTKESIKKALELTMSS 414 (454)
T ss_dssp EEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECG---G-----GSCCHHHHHHHHHHHHSS
T ss_pred eEEec--CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEec---C-----CCCCHHHHHHHHHHHHCC
Confidence 55554 22367999999999999977532 12223343 6677651 0 124688999999999975
No 59
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=92.52 E-value=0.41 Score=50.62 Aligned_cols=129 Identities=6% Similarity=-0.049 Sum_probs=71.2
Q ss_pred cEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEE-ecCC-hhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCC
Q 008028 372 PLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVL-GTGK-KPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GAD 447 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~-G~g~-~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aD 447 (580)
.+++..|..... ..+.+.+.+..|.+.+++++++ |... ..+.+.+ ....+.++....+.+. . .+++ .+|
T Consensus 273 vv~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~---~~~~~~~~~v~~w~pq-~--~vL~h~~~~ 345 (456)
T 2c1x_A 273 VVYISFGTVTTP-PPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF---LEKTRGYGMVVPWAPQ-A--EVLAHEAVG 345 (456)
T ss_dssp EEEEECCSSCCC-CHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTH---HHHHTTTEEEESCCCH-H--HHHTSTTEE
T ss_pred eEEEecCccccC-CHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHH---HhhcCCceEEecCCCH-H--HHhcCCcCC
Confidence 455666766532 2333333333333335665544 4332 1111111 1112345555543333 2 3788 667
Q ss_pred EEEecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeEecC-ceeEEEeecccccccCCc--ccHHHHHHHHHHHHH
Q 008028 448 FMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTVKEG-ITGFQMRSFHVECDRVDL--ADVAAIAKHVNRAVA 520 (580)
Q Consensus 448 i~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i~~~-~~G~~~~~~~~~~~~v~~--~d~~~la~~l~~ll~ 520 (580)
++|.= +-..+.+||+++|+|+|+-...+ ....+.+. +.|..+ +. -+.+.++++|.++++
T Consensus 346 ~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l----------~~~~~~~~~l~~~i~~ll~ 411 (456)
T 2c1x_A 346 AFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI----------EGGVFTKSGLMSCFDQILS 411 (456)
T ss_dssp EEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC----------GGGSCCHHHHHHHHHHHHH
T ss_pred EEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEe----------cCCCcCHHHHHHHHHHHHC
Confidence 77732 33568999999999999887532 12223344 566665 32 368999999999998
Q ss_pred h
Q 008028 521 T 521 (580)
Q Consensus 521 ~ 521 (580)
+
T Consensus 412 ~ 412 (456)
T 2c1x_A 412 Q 412 (456)
T ss_dssp S
T ss_pred C
Confidence 6
No 60
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=91.65 E-value=1.3 Score=47.07 Aligned_cols=132 Identities=8% Similarity=-0.052 Sum_probs=73.3
Q ss_pred cEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCC-----h-hhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhc
Q 008028 372 PLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGK-----K-PMEQQIEQLEIICPEKARGITKFSTPLAHKIIAG 445 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~-----~-~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 445 (580)
.+++..|.+.. ...+.+.+.+..|.+.+.+++++-... . .+.+.+ ....++++.... |-+.. .+++.
T Consensus 297 vv~vs~GS~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~---~~~~~~~~~v~~-~~pq~--~~L~h 369 (482)
T 2pq6_A 297 VVYVNFGSTTV-MTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF---TNEIADRGLIAS-WCPQD--KVLNH 369 (482)
T ss_dssp EEEEECCSSSC-CCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHH---HHHHTTTEEEES-CCCHH--HHHTS
T ss_pred eEEEecCCccc-CCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhH---HHhcCCCEEEEe-ecCHH--HHhcC
Confidence 35556666542 223333333333333467777653321 0 021222 222345566555 43333 38877
Q ss_pred CCEEEecCCCCCccHHHHHHHHcCCceEEcCCCCc----ceeEe-cCceeEEEeecccccccCCcccHHHHHHHHHHHHH
Q 008028 446 ADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGL----FDTVK-EGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVA 520 (580)
Q Consensus 446 aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~----~e~i~-~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~ 520 (580)
+++-++-++ +-..+++||+++|+|+|+--..+- ...+. +.+.|..+. ..-+.+.++++|.++++
T Consensus 370 ~~~~~~vth--~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~---------~~~~~~~l~~~i~~ll~ 438 (482)
T 2pq6_A 370 PSIGGFLTH--CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID---------TNVKREELAKLINEVIA 438 (482)
T ss_dssp TTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC---------SSCCHHHHHHHHHHHHT
T ss_pred CCCCEEEec--CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC---------CCCCHHHHHHHHHHHHc
Confidence 776333333 335689999999999999876431 11232 345666651 13478999999999998
Q ss_pred h
Q 008028 521 T 521 (580)
Q Consensus 521 ~ 521 (580)
+
T Consensus 439 ~ 439 (482)
T 2pq6_A 439 G 439 (482)
T ss_dssp S
T ss_pred C
Confidence 6
No 61
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=91.14 E-value=1.3 Score=44.80 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=71.4
Q ss_pred HHHcCCCCCCCCcEE-EEEccCccccCH--HHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEe-ccCC
Q 008028 360 QSQLGLPVDRNIPLI-GFIGRLEEQKGS--DILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGI-TKFS 435 (580)
Q Consensus 360 ~~~~glp~~~~~~~i-~f~Grl~~~Kg~--~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~-~~~~ 435 (580)
.+..|++ ++.++| +..|.-.+.|.+ +.+.+.++.|.+.+.++++.|... -++..+++....+.++..+ +..+
T Consensus 176 l~~~g~~--~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~--e~~~~~~i~~~~~~~~~~l~g~~s 251 (349)
T 3tov_A 176 YSSHGLT--DTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPM--DLEMVQPVVEQMETKPIVATGKFQ 251 (349)
T ss_dssp HHHTTCC--TTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTT--THHHHHHHHHTCSSCCEECTTCCC
T ss_pred HHHcCCC--CCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcc--hHHHHHHHHHhcccccEEeeCCCC
Confidence 3455664 233444 445644456665 577888887766678888887654 2445566655554333333 4456
Q ss_pred hHHHHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCC
Q 008028 436 TPLAHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVAST 477 (580)
Q Consensus 436 ~~~~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~ 477 (580)
-.+...+++.||++|-+- .|..=+ |.+.|+|+|+--.
T Consensus 252 l~e~~ali~~a~~~i~~D----sG~~Hl-Aaa~g~P~v~lfg 288 (349)
T 3tov_A 252 LGPLAAAMNRCNLLITND----SGPMHV-GISQGVPIVALYG 288 (349)
T ss_dssp HHHHHHHHHTCSEEEEES----SHHHHH-HHTTTCCEEEECS
T ss_pred HHHHHHHHHhCCEEEECC----CCHHHH-HHhcCCCEEEEEC
Confidence 667778999999999662 577777 8999999888643
No 62
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=87.48 E-value=4.7 Score=42.62 Aligned_cols=73 Identities=11% Similarity=-0.054 Sum_probs=47.3
Q ss_pred HHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCC----cceeE-ecCceeEEEeecccccccCCcccHHHHHHHH
Q 008028 441 KIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDTV-KEGITGFQMRSFHVECDRVDLADVAAIAKHV 515 (580)
Q Consensus 441 ~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~i-~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l 515 (580)
.+++.+++-++-++ +--.+.+||+++|+|+|+--..+ ....+ .+-+.|..+....+ ..-+.+.++++|
T Consensus 351 ~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~-----~~~~~~~l~~av 423 (480)
T 2vch_A 351 QVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDD-----GLVRREEVARVV 423 (480)
T ss_dssp HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTT-----SCCCHHHHHHHH
T ss_pred HHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccC-----CccCHHHHHHHH
Confidence 48999996444443 23367999999999999977543 22222 34456665410000 034789999999
Q ss_pred HHHHH
Q 008028 516 NRAVA 520 (580)
Q Consensus 516 ~~ll~ 520 (580)
.++++
T Consensus 424 ~~vl~ 428 (480)
T 2vch_A 424 KGLME 428 (480)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99997
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=86.74 E-value=3.7 Score=40.63 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=80.5
Q ss_pred cEEEEEccCccccCHH--HHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhcCCEE
Q 008028 372 PLIGFIGRLEEQKGSD--ILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAGADFM 449 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~~--~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~aDi~ 449 (580)
.+++..|.-.+.|.+. .+.+.++.|.+.++++++.+.++ .-.+..+++....+ .+...+..+-.+...+++.||++
T Consensus 180 ~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~-~e~~~~~~i~~~~~-~~~l~g~~sl~el~ali~~a~l~ 257 (326)
T 2gt1_A 180 YAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAP-HEEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAKFV 257 (326)
T ss_dssp EEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSH-HHHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCSEE
T ss_pred EEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCH-HHHHHHHHHHhhCC-cccccCCCCHHHHHHHHHhCCEE
Confidence 3445556545566654 78888888876788988874333 22334555554444 24444555667777899999999
Q ss_pred EecCCCCCccHHHHHHHHcCCceEEcCCCCcceeEec-CceeEEE-eecccccccCCcccHHHHHHHHHHHHHh
Q 008028 450 LVPSRFEPCGLIQLHAMRYGTVPIVASTGGLFDTVKE-GITGFQM-RSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 450 l~ps~~E~~g~~~lEAma~G~PvI~s~~gg~~e~i~~-~~~G~~~-~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|-+- .|..=+ |.+.|+|+|+--...-...... +.....+ +. ..| +..-+++++.+++.++++.
T Consensus 258 I~~D----SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~--~~c--m~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 258 VSVD----TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAP--GNE--LSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEES----SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECG--GGC--GGGCCHHHHHHHHHHTTTT
T ss_pred EecC----CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCC--ccc--ccCCCHHHHHHHHHHHHHH
Confidence 9663 477767 7779999877532211111000 1111111 11 112 2445678888888777763
No 64
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=84.27 E-value=1.2 Score=42.09 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=30.2
Q ss_pred cCChHHHHHHHh-cCCEEEecCCCCCccHHHHHHHHcCCceEEcCCC
Q 008028 433 KFSTPLAHKIIA-GADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTG 478 (580)
Q Consensus 433 ~~~~~~~~~~~~-~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~g 478 (580)
.|..+ +..+++ .||++|.= +-..+++|++++|+|.|+-...
T Consensus 120 ~f~~~-m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 120 DFSTK-MQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp CSSSS-HHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCS
T ss_pred eccch-HHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCc
Confidence 45433 345899 99999943 4457899999999998776543
No 65
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=84.14 E-value=13 Score=39.04 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=71.5
Q ss_pred cEEEEEccCccccC---HHHHHHHHhhhcCCCeEEEEEecCC-hhhHHHHH-HHHHHCCCCeeEeccCChHHHHHHHh--
Q 008028 372 PLIGFIGRLEEQKG---SDILAQAIPKFMGGNVQIVVLGTGK-KPMEQQIE-QLEIICPEKARGITKFSTPLAHKIIA-- 444 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg---~~~ll~a~~~l~~~~v~lii~G~g~-~~~~~~i~-~l~~~~~~~v~~~~~~~~~~~~~~~~-- 444 (580)
.+++..|.....-+ +..++++++. .+++++++-... +.+.+.+. +... ++++.... |-... .+++
T Consensus 278 vv~vs~GS~~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~l~~~~~~~~~~--~~~~~v~~-w~pq~--~vL~h~ 349 (463)
T 2acv_A 278 VVFLCFGSMGVSFGPSQIREIALGLKH---SGVRFLWSNSAEKKVFPEGFLEWMEL--EGKGMICG-WAPQV--EVLAHK 349 (463)
T ss_dssp EEEEECCSSCCCCCHHHHHHHHHHHHH---HTCEEEEECCCCGGGSCTTHHHHHHH--HCSEEEES-SCCHH--HHHHST
T ss_pred eEEEEeccccccCCHHHHHHHHHHHHh---CCCcEEEEECCCcccCChhHHHhhcc--CCCEEEEc-cCCHH--HHhCCC
Confidence 45666677652223 4445555544 367776654322 11211111 1110 23455444 43333 2676
Q ss_pred cCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCC----ccee-EecCceeEEEe-ecccccccCC--cccHHHHHHHHH
Q 008028 445 GADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG----LFDT-VKEGITGFQMR-SFHVECDRVD--LADVAAIAKHVN 516 (580)
Q Consensus 445 ~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg----~~e~-i~~~~~G~~~~-~~~~~~~~v~--~~d~~~la~~l~ 516 (580)
.+|++|.- +-..+.+||+++|+|+|+--..+ .... +.+.+.|..+. .+.. . .-+.+.++++|.
T Consensus 350 ~~~~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~-----~~~~~~~~~l~~ai~ 420 (463)
T 2acv_A 350 AIGGFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRK-----GSDVVAAEEIEKGLK 420 (463)
T ss_dssp TEEEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCT-----TCCCCCHHHHHHHHH
T ss_pred ccCeEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCC-----CCccccHHHHHHHHH
Confidence 57777732 33578999999999999987533 1222 24455666541 0000 1 347899999999
Q ss_pred HHHH
Q 008028 517 RAVA 520 (580)
Q Consensus 517 ~ll~ 520 (580)
++++
T Consensus 421 ~ll~ 424 (463)
T 2acv_A 421 DLMD 424 (463)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 9996
No 66
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=77.40 E-value=1.2 Score=46.29 Aligned_cols=45 Identities=27% Similarity=0.138 Sum_probs=31.8
Q ss_pred cccccCCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 77 KKIICQQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 77 ~~~~~~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+.......|||+|++. | ++|.-.-+..++++|.++||+|+++++.
T Consensus 13 ~~~~~~~~mrIl~~~~---~---~~GHv~p~l~la~~L~~~GheV~~~~~~ 57 (441)
T 2yjn_A 13 GLVPRGSHMRVVFSSM---A---SKSHLFGLVPLAWAFRAAGHEVRVVASP 57 (441)
T ss_dssp ------CCCEEEEECC---S---CHHHHTTTHHHHHHHHHTTCEEEEEECG
T ss_pred cccccCCccEEEEEcC---C---CcchHhHHHHHHHHHHHCCCeEEEEeCc
Confidence 3333355699999954 2 4566667778999999999999999975
No 67
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=74.07 E-value=2.4 Score=43.68 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=31.8
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||++++. | ++|.-.-...++++|.++||+|+++++.
T Consensus 1 MrIl~~~~---~---~~GH~~p~l~la~~L~~~Gh~V~~~~~~ 37 (416)
T 1rrv_A 1 MRVLLSVC---G---TRGDVEIGVALADRLKALGVQTRMCAPP 37 (416)
T ss_dssp CEEEEEEE---S---CHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CeEEEEec---C---CCccHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 89999964 2 5777788889999999999999999985
No 68
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=72.75 E-value=2.5 Score=43.49 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=32.1
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
..|||++++. | ..|.-.-...|+++|.++||+|+++++.
T Consensus 11 ~~~~Il~~~~---~---~~GHv~p~l~la~~L~~~Gh~V~~~~~~ 49 (424)
T 2iya_A 11 TPRHISFFNI---P---GHGHVNPSLGIVQELVARGHRVSYAITD 49 (424)
T ss_dssp CCCEEEEECC---S---CHHHHHHHHHHHHHHHHTTCEEEEEECG
T ss_pred ccceEEEEeC---C---CCcccchHHHHHHHHHHCCCeEEEEeCH
Confidence 3579999853 3 4677777889999999999999999985
No 69
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=70.33 E-value=2.9 Score=43.01 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=32.2
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
|||++++. | ++|.-.-+..++++|+++||+|+++++..
T Consensus 1 M~Il~~~~---~---~~GHv~P~l~la~~L~~~Gh~V~~~~~~~ 38 (415)
T 1iir_A 1 MRVLLATC---G---SRGDTEPLVALAVRVRDLGADVRMCAPPD 38 (415)
T ss_dssp CEEEEECC---S---CHHHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred CeEEEEcC---C---CchhHHHHHHHHHHHHHCCCeEEEEcCHH
Confidence 89999863 3 57888888899999999999999999863
No 70
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=64.82 E-value=3.7 Score=40.00 Aligned_cols=27 Identities=41% Similarity=0.517 Sum_probs=22.3
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 100 TGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
+||.|-+-..|++.|.++||+|++++-
T Consensus 6 TGatGfIG~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 6 GGGTGFIGTALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 366666667899999999999999874
No 71
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=63.94 E-value=7.6 Score=33.62 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=32.7
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeE-EEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRV-MSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V-~vi~~~ 127 (580)
.||++|+... +|+ ..-.+....+++.++.+.||+| .|+-..
T Consensus 12 ~~~~~ivv~~-~Py--g~~~a~~Al~~A~aala~g~eV~~VFf~~ 53 (140)
T 2d1p_A 12 SMRFAIVVTG-PAY--GTQQASSAFQFAQALIADGHELSSVFFYR 53 (140)
T ss_dssp CCEEEEEECS-CSS--SSSHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ceEEEEEEcC-CCC--CcHHHHHHHHHHHHHHHCCCccCEEEEec
Confidence 5999999987 665 3456777889999999999999 666543
No 72
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=62.61 E-value=8.3 Score=32.69 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=31.3
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeE-EEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRV-MSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V-~vi~~~ 127 (580)
||++++... .|+ ..-....+..++.++.+.||+| .|+-..
T Consensus 1 mk~~iiv~~-~p~--~~~~~~~al~~a~a~~~~g~~v~~vff~~ 41 (130)
T 2hy5_A 1 MKFALQINE-GPY--QHQASDSAYQFAKAALEKGHEIFRVFFYH 41 (130)
T ss_dssp CEEEEEECS-CTT--TSTHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhcCCeeCEEEEec
Confidence 789998876 565 2355677889999999999999 777554
No 73
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=58.27 E-value=12 Score=36.23 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCC
Q 008028 439 AHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG 479 (580)
Q Consensus 439 ~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg 479 (580)
+..++..+|+++--+..+..--.+..++.+|+|+|+..+|.
T Consensus 67 l~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGF 107 (272)
T ss_dssp HHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 34567899999976654444445677899999999877764
No 74
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=55.16 E-value=8.4 Score=35.15 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=25.5
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||++... +|++|. .+++.|.+.||+|.+++-.
T Consensus 1 MkvlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGIIGA-------TGRAGS---RILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CeEEEEcC-------CchhHH---HHHHHHHhCCCEEEEEEcC
Confidence 77766554 477775 6788999999999988764
No 75
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=55.13 E-value=81 Score=32.68 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=45.7
Q ss_pred HHHhcCCEEEecCCCCCccHH--HHHHHH---------cCCceEEcC---CCCcceeEec---------CceeEEEeecc
Q 008028 441 KIIAGADFMLVPSRFEPCGLI--QLHAMR---------YGTVPIVAS---TGGLFDTVKE---------GITGFQMRSFH 497 (580)
Q Consensus 441 ~~~~~aDi~l~ps~~E~~g~~--~lEAma---------~G~PvI~s~---~gg~~e~i~~---------~~~G~~~~~~~ 497 (580)
.++..||.+|.-+= ++|+- ++|++. .++|+|..+ .+|+|+-+.+ ....+++
T Consensus 241 ~mv~~SDAfIaLPG--G~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~~~~~~ii---- 314 (460)
T 3bq9_A 241 AFVRCAHGIVIFPG--GAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKI---- 314 (460)
T ss_dssp HHHHHCSEEEECSC--SHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTTGGGGCEE----
T ss_pred HHHHhCCEEEEcCC--CcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcchhhcCcEE----
Confidence 47888998886553 78887 888888 589999986 4566653321 1122221
Q ss_pred cccccCCcccHHHHHHHHHHHHHh
Q 008028 498 VECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 498 ~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
-.+|++++++.|.+.+..
T Consensus 315 ------v~ddpeEal~~l~~~~~~ 332 (460)
T 3bq9_A 315 ------IIDDPAAVAQHMHAGMAA 332 (460)
T ss_dssp ------EESCHHHHHHHHHHHHHH
T ss_pred ------EeCCHHHHHHHHHHHHHH
Confidence 247888888888776663
No 76
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=54.44 E-value=8.8 Score=35.21 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=25.1
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||++... +|++|. .+++.|.+.|++|.+++-.
T Consensus 1 MkilVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVLGA-------TGRAGS---AIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp CEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEcC-------CCHHHH---HHHHHHHHCCCEEEEEEec
Confidence 77665554 477775 7888999999999998754
No 77
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=54.43 E-value=12 Score=36.58 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=29.6
Q ss_pred ccCCCceEEEEeecccCccccccH-HHHhccchHHHHhCCCeEEEEEe
Q 008028 80 ICQQGMNLVFVGAEVAPWSKTGGL-GDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 80 ~~~~~mkI~~vs~e~~P~~~~GG~-g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
.+++.|||++|... |. .++. ..++....++|.+.||+|.++-+
T Consensus 18 ~~m~~MKiLII~aH--P~--~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 18 LYFQSMKVLLIYAH--PE--PRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ----CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred chhhCCeEEEEEeC--CC--CccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34778999999985 54 3444 34556678889999999999865
No 78
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=53.96 E-value=12 Score=34.36 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=30.4
Q ss_pred HHHhcCCEEEecCCCCCccHH--HHHHHHcCCceEEcCCCCcce
Q 008028 441 KIIAGADFMLVPSRFEPCGLI--QLHAMRYGTVPIVASTGGLFD 482 (580)
Q Consensus 441 ~~~~~aDi~l~ps~~E~~g~~--~lEAma~G~PvI~s~~gg~~e 482 (580)
.+...||.+|..+- ++|+- +.||+..|+||++-+..|.|+
T Consensus 114 ~m~~~sda~IvlpG--G~GTL~E~~eal~~~kPV~lln~~g~w~ 155 (195)
T 1rcu_A 114 VLLRNADVVVSIGG--EIGTAIEILGAYALGKPVILLRGTGGWT 155 (195)
T ss_dssp HHHTTCSEEEEESC--CHHHHHHHHHHHHTTCCEEEETTSCHHH
T ss_pred HHHHhCCEEEEecC--CCcHHHHHHHHHhcCCCEEEECCCCccH
Confidence 47788999887652 47764 899999999999997555443
No 79
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=53.62 E-value=8 Score=36.16 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=29.3
Q ss_pred ceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
|||++ +. .||.|. .+.+|+.+|+++|++|.+|-...
T Consensus 1 mkI~v-s~-------kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAV-AG-------KGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEE-EC-------SSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEE-ec-------CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 78888 64 477765 67789999999999999997764
No 80
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=53.25 E-value=97 Score=25.70 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=66.4
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH-----------hcCCEEEecCCC-CCccHHHHHHHH
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII-----------AGADFMLVPSRF-EPCGLIQLHAMR 467 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~-----------~~aDi~l~ps~~-E~~g~~~lEAma 467 (580)
+.+++|+.+.. .....+.++-.+.+........-+...+...+ ...|++++=... +.-|..+++.+.
T Consensus 4 ~~~ILivddd~-~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 4 SVTIVMIEDDL-GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp -CEEEEECCCH-HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CceEEEEeCCH-HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 45777777654 34555555555554311222223455555455 246787775543 456777787776
Q ss_pred c-----CCceEEcC-CCCc---ceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 468 Y-----GTVPIVAS-TGGL---FDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 468 ~-----G~PvI~s~-~gg~---~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
. .+|+|+-. .... .+.+..|..+++. .|.+.+.+.++|.++...
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYIT----------KPVNYENFANAIRQLGLF 135 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 5 55655443 3221 2233456788887 999999999999988664
No 81
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=52.56 E-value=96 Score=25.44 Aligned_cols=109 Identities=7% Similarity=0.016 Sum_probs=63.2
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH--hcCCEEEecCCC-CCccHHHHHHHHc-----CCc
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII--AGADFMLVPSRF-EPCGLIQLHAMRY-----GTV 471 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~--~~aDi~l~ps~~-E~~g~~~lEAma~-----G~P 471 (580)
..+++|+.+... ....+.++-...+..+. ..-+...+...+ ...|++++-... +..|..+++.+.. .+|
T Consensus 8 ~~~iLivd~~~~-~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 8 WWRIMLVDTQLP-ALAASISALSQEGFDII--QCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp CEEEEEECTTGG-GGHHHHHHHHHHTEEEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CceEEEEeCCHH-HHHHHHHHHHHcCCeEE--EeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 567788877653 22333333222222233 222333333333 257888876543 4467778887764 566
Q ss_pred eEEc-CCCCcc---eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 472 PIVA-STGGLF---DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 472 vI~s-~~gg~~---e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
+|+- ...... +.+..|..+++. .|.+.+.+...|..++..
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIA----------KPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 5543 333221 223457778887 899999999999999885
No 82
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=51.60 E-value=12 Score=33.49 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=25.4
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+|+++.. +|++|. .++++|.+.|++|.+++..
T Consensus 3 ~~~ilVtGa-------tG~iG~---~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 3 VKKIAIFGA-------TGQTGL---TTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CCEEEEEST-------TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEcC-------CcHHHH---HHHHHHHHCCCeEEEEEeC
Confidence 367766554 477765 6788899999999988764
No 83
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=50.10 E-value=18 Score=35.40 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCC
Q 008028 439 AHKIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG 479 (580)
Q Consensus 439 ~~~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg 479 (580)
+..++..+|+++--+..+..--.+..++.+|+|+|+..+|.
T Consensus 82 l~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp HHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 34577899999965543333333567889999999877763
No 84
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=49.92 E-value=12 Score=34.82 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=26.8
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.++|+|++... +||+|. .+++.|.+.||+|.+++-.
T Consensus 19 l~~~~ilVtGa-------tG~iG~---~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 19 FQGMRVLVVGA-------NGKVAR---YLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp --CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred cCCCeEEEECC-------CChHHH---HHHHHHHhCCCeEEEEECC
Confidence 34688876654 588886 6788899999999998764
No 85
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=48.50 E-value=1.1e+02 Score=24.98 Aligned_cols=111 Identities=9% Similarity=-0.001 Sum_probs=68.3
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHHc-----CCc
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMRY-----GTV 471 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma~-----G~P 471 (580)
+.+++|+.+.. .....+.++-.+.+........-+...+...+. ..|++++-... +.-|+.+++.+.. .+|
T Consensus 5 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 5 SKRVLVVEDNP-DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 46778877654 345555555555554322223334555544444 46887775543 4467778887765 566
Q ss_pred eEEcCCCCcc----eeEecCceeEEEeecccccccCCcc-cHHHHHHHHHHHHHh
Q 008028 472 PIVASTGGLF----DTVKEGITGFQMRSFHVECDRVDLA-DVAAIAKHVNRAVAT 521 (580)
Q Consensus 472 vI~s~~gg~~----e~i~~~~~G~~~~~~~~~~~~v~~~-d~~~la~~l~~ll~~ 521 (580)
+|+-....-. +.+..|..+++. .|. +.+.+.++|.++++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 84 IVILTDNVSDDRAKQCMAAGASSVVD----------KSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp EEEEETTCCHHHHHHHHHTTCSEEEE----------CCTTSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEE----------CCCCcHHHHHHHHHHHHHH
Confidence 6554432222 234457788887 898 999999999999884
No 86
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=48.30 E-value=20 Score=29.39 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCccc
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYK 132 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~ 132 (580)
+.|||+++|.. ....+.++..+-+++.++|.+|.+.+..+....
T Consensus 5 ~~mkIlL~C~a------GmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~ 48 (108)
T 3nbm_A 5 KELKVLVLCAG------SGTSAQLANAINEGANLTEVRVIANSGAYGAHY 48 (108)
T ss_dssp CCEEEEEEESS------SSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT
T ss_pred cCceEEEECCC------CCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH
Confidence 46999999974 234555677777888889999999886554433
No 87
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=47.30 E-value=11 Score=34.53 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=25.5
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||++... +|++|. .+++.|.+.|++|.+++-.
T Consensus 1 M~ilItGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIVGS-------TGRVGK---SLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEEST-------TSHHHH---HHHHHHTTSSCEEEEEESS
T ss_pred CeEEEECC-------CCHHHH---HHHHHHHHCCCEEEEEECC
Confidence 67766554 477775 7889999999999998765
No 88
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=47.03 E-value=1.1e+02 Score=24.71 Aligned_cols=110 Identities=6% Similarity=0.014 Sum_probs=64.1
Q ss_pred CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHHc-----CC
Q 008028 399 GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMRY-----GT 470 (580)
Q Consensus 399 ~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma~-----G~ 470 (580)
...+++|+.+.. ...+.+.++-...+..+. ..-+...+...+. ..|++++-... +..|..+++.+.. .+
T Consensus 6 ~~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 6 HKGDVMIVDDDA-HVRIAVKTILSDAGFHII--SADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CCCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCeEEEEcCCH-HHHHHHHHHHHHCCeEEE--EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 356778877654 344445544444443332 2223444444444 35777765543 4467777777764 45
Q ss_pred ceEEc-CCCC---cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 471 VPIVA-STGG---LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 471 PvI~s-~~gg---~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|+|+- .... ..+.+..|..+++. .|.+.+.+.+.|..+++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYIT----------KPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 55443 3222 22233446677876 899999999999998874
No 89
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=46.82 E-value=11 Score=33.99 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=29.4
Q ss_pred ceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||+.|+.. .||.|. .+..|+.+|++.|++|.+|-..
T Consensus 1 M~vi~v~s~------kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNP------KGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCS------STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeC------CCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 777777753 466664 7788999999999999999775
No 90
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=45.03 E-value=16 Score=38.46 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=32.8
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecC
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
..++|+++. +| ..|.-.-+..|++.|+++||+|+++++..
T Consensus 7 ~~~~vl~~p---~p---~~GHi~P~l~La~~L~~rG~~VT~v~t~~ 46 (482)
T 2pq6_A 7 RKPHVVMIP---YP---VQGHINPLFKLAKLLHLRGFHITFVNTEY 46 (482)
T ss_dssp -CCEEEEEC---CS---SHHHHHHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred CCCEEEEec---Cc---cchhHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 347899887 34 47888888999999999999999998753
No 91
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=44.91 E-value=1.2e+02 Score=25.28 Aligned_cols=110 Identities=11% Similarity=0.121 Sum_probs=66.2
Q ss_pred CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHHc-----CC
Q 008028 399 GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMRY-----GT 470 (580)
Q Consensus 399 ~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma~-----G~ 470 (580)
.+.+++|+.+.. .....+.++-.+.+..+. ..-+...+...+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 6 ~~~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (154)
T 3gt7_A 6 RAGEILIVEDSP-TQAEHLKHILEETGYQTE--HVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTI 82 (154)
T ss_dssp -CCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred CCCcEEEEeCCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 356777777654 344455555444443332 2234444444443 46888876553 4567777777753 56
Q ss_pred ceEEcC-CCCc---ceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 471 VPIVAS-TGGL---FDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 471 PvI~s~-~gg~---~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|+|+-. .... .+.+..|..+++. .|.+.+.+.++|.++++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 83 PVILLTILSDPRDVVRSLECGADDFIT----------KPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp CEEEEECCCSHHHHHHHHHHCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHCCCCEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 665543 2221 2223456778887 999999999999999985
No 92
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=43.76 E-value=1.3e+02 Score=24.36 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=65.3
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH--hcCCEEEecCCC-CCccHHHHHHHHc-----CCc
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII--AGADFMLVPSRF-EPCGLIQLHAMRY-----GTV 471 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~--~~aDi~l~ps~~-E~~g~~~lEAma~-----G~P 471 (580)
..+++|+.+.. .....+.++-.+.+..+... -+...+...+ ...|++++-... +.-|..+++.+.. .+|
T Consensus 6 ~~~iLivdd~~-~~~~~l~~~l~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 6 RPRILICEDDP-DIARLLNLMLEKGGFDSDMV--HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CSEEEEECSCH-HHHHHHHHHHHHTTCEEEEE--CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCEEEEcCCH-HHHHHHHHHHHHCCCeEEEE--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 45677776654 24445555444444333222 2344443333 346888776543 4567777877765 667
Q ss_pred eEEcCCCCc----c-eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 472 PIVASTGGL----F-DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 472 vI~s~~gg~----~-e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
+|+-....- . +....|..+++. .|.+.+.+.++|.++++.
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLE----------KPIDENLLILSLHRAIDN 127 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEEC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEe----------CCCCHHHHHHHHHHHHHh
Confidence 655443221 1 334456778876 899999999999999985
No 93
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=43.26 E-value=26 Score=29.72 Aligned_cols=41 Identities=7% Similarity=-0.198 Sum_probs=31.4
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.+|++++... .|+ ...-......++.++++.||+|.++-..
T Consensus 15 ~~kl~ii~~s-gP~--~~~~~~~al~lA~~A~a~g~eV~vFf~~ 55 (134)
T 3mc3_A 15 XXXILIVVTH-GPE--DLDRTYAPLFMASISASMEYETSVFFMI 55 (134)
T ss_dssp CCEEEEEECC-CGG--GTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cceEEEEEcc-CCC--CHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 4689888886 564 3455566778899999999999988765
No 94
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=42.93 E-value=19 Score=33.86 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=26.2
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
||+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 1 mk~vlVTGa------s~gIG~---~~a~~l~~~G~~V~~~~r~ 34 (257)
T 1fjh_A 1 MSIIVISGC------ATGIGA---ATRKVLEAAGHQIVGIDIR 34 (257)
T ss_dssp CCEEEEETT------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCC------CCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 677777754 578876 6888999999998887643
No 95
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=42.32 E-value=22 Score=28.93 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=30.3
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhC-CC-eEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAAR-GH-RVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~-G~-~V~vi~~~ 127 (580)
||++++... .|+ .......+..++.++.+. || +|.++-..
T Consensus 2 ~k~~ii~~~-~p~--~~~~~~~al~~a~~~~~~~g~~~v~vff~~ 43 (117)
T 1jx7_A 2 QKIVIVANG-APY--GSESLFNSLRLAIALREQESNLDLRLFLMS 43 (117)
T ss_dssp CEEEEEECC-CTT--TCSHHHHHHHHHHHHHHHCTTCEEEEEECG
T ss_pred cEEEEEEcC-CCC--CcHHHHHHHHHHHHHHhcCCCccEEEEEEc
Confidence 378888876 565 234556678899999999 99 99888765
No 96
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=41.08 E-value=17 Score=33.65 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=25.3
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
||+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 1 Mk~vlVTGa------s~gIG~---~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVITGA------SSGLGA---ELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEEST------TSHHHH---HHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEecC------CchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 677777754 578875 7889999999998887654
No 97
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=40.66 E-value=82 Score=29.75 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=45.1
Q ss_pred EEEEEec-CChhhHHHHHHHHHHCC-CCeeEeccCChHHHHHHHh-cCCEEEecCCCCCccHHHHHHHHcCCceEEcCCC
Q 008028 402 QIVVLGT-GKKPMEQQIEQLEIICP-EKARGITKFSTPLAHKIIA-GADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTG 478 (580)
Q Consensus 402 ~lii~G~-g~~~~~~~i~~l~~~~~-~~v~~~~~~~~~~~~~~~~-~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~g 478 (580)
++.|+|. |. +-+.+.+...+.+ ..+........+. ..++. .+|+++--+.-+..--.+..+..+|+|+|+..+|
T Consensus 2 kV~V~Ga~G~--mG~~i~~~~~~~~~~elva~~d~~~dl-~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGK--VGTTMVRAVAAADDLTLSAELDAGDPL-SLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSH--HHHHHHHHHHHCTTCEEEEEECTTCCT-HHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCH--HHHHHHHHHHhCCCCEEEEEEccCCCH-HHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 6788995 65 5555555554443 3454444333222 22444 8999995555455434455678999999987775
Q ss_pred C
Q 008028 479 G 479 (580)
Q Consensus 479 g 479 (580)
.
T Consensus 79 ~ 79 (245)
T 1p9l_A 79 F 79 (245)
T ss_dssp C
T ss_pred C
Confidence 4
No 98
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=40.51 E-value=21 Score=33.22 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=24.2
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
||.++|+.- +||+|. .+++.|.+.|++|.++...
T Consensus 1 Mk~vlVtGa------sg~iG~---~l~~~L~~~g~~V~~~~r~ 34 (255)
T 2dkn_A 1 MSVIAITGS------ASGIGA---ALKELLARAGHTVIGIDRG 34 (255)
T ss_dssp -CEEEEETT------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEeCC------CcHHHH---HHHHHHHhCCCEEEEEeCC
Confidence 565666643 577776 6788999999998888653
No 99
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=39.55 E-value=25 Score=30.77 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=30.2
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||+++-.. + +|....++..+++.|.+.|++|.++-..
T Consensus 1 Mkv~IvY~S--~---tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 38 (161)
T 3hly_A 1 MSVLIGYLS--D---YGYSDRLSQAIGRGLVKTGVAVEMVDLR 38 (161)
T ss_dssp -CEEEEECT--T---STTHHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred CEEEEEEEC--C---ChHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 677766542 2 6999999999999999999999888654
No 100
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=39.49 E-value=21 Score=33.71 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=30.6
Q ss_pred CceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
.|||+.|+.. .||.|. .+..|+.+|++.|++|.+|=...
T Consensus 5 ~~~vI~v~s~------kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQ------KGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEEeC------CCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 5677777643 588775 77889999999999999997653
No 101
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=37.77 E-value=21 Score=32.02 Aligned_cols=33 Identities=24% Similarity=0.565 Sum_probs=23.7
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+|||++... +||+|. .+++.|. +|++|.++...
T Consensus 3 kM~vlVtGa-------sg~iG~---~~~~~l~-~g~~V~~~~r~ 35 (202)
T 3d7l_A 3 AMKILLIGA-------SGTLGS---AVKERLE-KKAEVITAGRH 35 (202)
T ss_dssp SCEEEEETT-------TSHHHH---HHHHHHT-TTSEEEEEESS
T ss_pred CcEEEEEcC-------CcHHHH---HHHHHHH-CCCeEEEEecC
Confidence 478655543 577776 6788888 89999887653
No 102
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=37.50 E-value=50 Score=32.83 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=32.9
Q ss_pred HHHHhcCCEEEecC--CCCC---ccHHHHHHHHcCCceEEcCCCCccee
Q 008028 440 HKIIAGADFMLVPS--RFEP---CGLIQLHAMRYGTVPIVASTGGLFDT 483 (580)
Q Consensus 440 ~~~~~~aDi~l~ps--~~E~---~g~~~lEAma~G~PvI~s~~gg~~e~ 483 (580)
..+++.||++++.. .-|+ ++-..+..|--|.-+|-+..|++.+.
T Consensus 189 ~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde 237 (334)
T 3kb6_A 189 DELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDT 237 (334)
T ss_dssp HHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred HHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccH
Confidence 46899999988643 3455 45568888888888888888887664
No 103
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=37.26 E-value=22 Score=34.93 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=26.9
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.++|+|++... +|++|. .+++.|.+.||+|.++...
T Consensus 18 ~~~~~vlVTGa-------sG~iG~---~l~~~L~~~g~~V~~~~r~ 53 (330)
T 2pzm_A 18 GSHMRILITGG-------AGCLGS---NLIEHWLPQGHEILVIDNF 53 (330)
T ss_dssp TTCCEEEEETT-------TSHHHH---HHHHHHGGGTCEEEEEECC
T ss_pred CCCCEEEEECC-------CCHHHH---HHHHHHHHCCCEEEEEECC
Confidence 45688776554 477775 6788899999999988753
No 104
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=37.26 E-value=19 Score=35.45 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.+.|+|++... +|++|. .+++.|.+.||+|.++...
T Consensus 17 ~~~~~vlVtGa-------tG~iG~---~l~~~L~~~G~~V~~~~r~ 52 (347)
T 4id9_A 17 RGSHMILVTGS-------AGRVGR---AVVAALRTQGRTVRGFDLR 52 (347)
T ss_dssp ----CEEEETT-------TSHHHH---HHHHHHHHTTCCEEEEESS
T ss_pred cCCCEEEEECC-------CChHHH---HHHHHHHhCCCEEEEEeCC
Confidence 34577766554 467765 6788999999999988654
No 105
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=36.43 E-value=20 Score=37.68 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=31.7
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhC-CCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAAR-GHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~-G~~V~vi~~~y 128 (580)
.|+|+++.. | ..|.-.-...|++.|+++ ||+|+++++..
T Consensus 6 ~~~vl~~p~---p---~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 6 TPHVAIIPS---P---GMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp CCEEEEECC---S---CHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CcEEEEecC---c---chhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 478888873 3 467777788999999998 99999999864
No 106
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=36.35 E-value=1.8e+02 Score=23.90 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=62.3
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHHc---CCceE
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMRY---GTVPI 473 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma~---G~PvI 473 (580)
..+++|+.+.. ...+.+.++-.+.+........-+...+...+. ..|++++-... +..|+.+++.+.. .+|+|
T Consensus 20 m~~iLivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 20 HMKVLVAEDQS-MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred ccEEEEEcCCH-HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 45667776543 234444444443332111222223444433433 36777765543 4567777766654 45554
Q ss_pred EcC-CCC---cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 474 VAS-TGG---LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 474 ~s~-~gg---~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
+-. ... ..+.+..|..+++. .|.+.+.+.++|.++++.
T Consensus 99 ~ls~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 99 VVTTFKRAGYFERAVKAGVDAYVL----------KERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEE----------TTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEe----------cCCCHHHHHHHHHHHHcC
Confidence 433 222 22234457788887 999999999999999885
No 107
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=36.32 E-value=31 Score=28.52 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=24.0
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+|+++.. |.+|. .+++.|.+.|++|.++...
T Consensus 4 ~m~i~IiG~--------G~iG~---~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGI--------GRVGY---TLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECC--------SHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC--------CHHHH---HHHHHHHhCCCeEEEEECC
Confidence 588888752 44554 5788899999999988653
No 108
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=35.97 E-value=35 Score=28.22 Aligned_cols=39 Identities=18% Similarity=0.017 Sum_probs=29.5
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|++|+... .|+ ..-.+.-..+++.++.+.||+|.|+-..
T Consensus 3 k~~~vv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~vff~~ 41 (119)
T 2d1p_B 3 RIAFVFST-APH--GTAAGREGLDALLATSALTDDLAVFFIA 41 (119)
T ss_dssp CEEEEECS-CTT--TSTHHHHHHHHHHHHHTTCSCEEEEECG
T ss_pred EEEEEEcC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEeh
Confidence 58888886 675 2345566778999999999999887654
No 109
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=35.54 E-value=23 Score=34.15 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=29.3
Q ss_pred CceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
+|||+.|+. .||.|. .+.+|+.+|+++|++|.+|=...
T Consensus 1 ~MkvIavs~-------KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 1 AMRQCAIYG-------KGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp CCEEEEEEE-------CTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CceEEEEeC-------CCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 478777753 466665 67789999999999999987653
No 110
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=35.51 E-value=1.4e+02 Score=23.98 Aligned_cols=106 Identities=11% Similarity=0.141 Sum_probs=54.4
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCCCCccHHHHHHHH--c-CCceEE
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRFEPCGLIQLHAMR--Y-GTVPIV 474 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~E~~g~~~lEAma--~-G~PvI~ 474 (580)
..+++|+.+.. .....+.++-.+.+..+.. .-+...+...+. ..|++++| +.-|..+++.+. . .+|+|+
T Consensus 18 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ 91 (137)
T 2pln_A 18 SMRVLLIEKNS-VLGGEIEKGLNVKGFMADV--TESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLV 91 (137)
T ss_dssp CSEEEEECSCH-HHHHHHHHHHHHTTCEEEE--ESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHHcCcEEEE--eCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEE
Confidence 44566665543 2333344433333322322 222333322222 45777722 234555555554 3 666554
Q ss_pred cC-CCC---cceeEecCceeEEEeecccccccCCcc-cHHHHHHHHHHHHHh
Q 008028 475 AS-TGG---LFDTVKEGITGFQMRSFHVECDRVDLA-DVAAIAKHVNRAVAT 521 (580)
Q Consensus 475 s~-~gg---~~e~i~~~~~G~~~~~~~~~~~~v~~~-d~~~la~~l~~ll~~ 521 (580)
-. ... ..+.+..|..+++. .|. +.+.+...|..++..
T Consensus 92 ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 92 SSDNPTSEEEVHAFEQGADDYIA----------KPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEE----------SSCSCHHHHHHHHHHHTC-
T ss_pred EeCCCCHHHHHHHHHcCCceeee----------CCCCCHHHHHHHHHHHHhh
Confidence 43 222 12223456678887 888 999999999888763
No 111
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=35.12 E-value=37 Score=28.83 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.8
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||+++... .+|....++..+++.|.+.|++|.++...
T Consensus 2 ~ki~I~y~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 2 SKVLIVFGS-----STGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp CEEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 466555432 26888999999999999999999988764
No 112
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=34.84 E-value=21 Score=33.21 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=29.8
Q ss_pred CceEEEEeecccCccccccHHH--HhccchHHHHhC-CCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAAR-GHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~-G~~V~vi~~~y 128 (580)
.|||+.|+.. .||.|. .+..|+.+|++. |++|.+|-...
T Consensus 3 ~~~vI~v~s~------kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 3 AKRVFGFVSA------KGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp CCEEEEEEES------STTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred CCeEEEEECC------CCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 4676666653 466665 677899999999 99999997754
No 113
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=34.74 E-value=31 Score=29.45 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=31.0
Q ss_pred Cc-eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GM-NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~m-kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.| |++|+... .|+ ..-...-..+++.++++.||+|.|+-..
T Consensus 4 ~Mkk~~ivv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~Vff~~ 45 (136)
T 2hy5_B 4 VVKKFMYLNRK-APY--GTIYAWEALEVVLIGAAFDQDVCVLFLD 45 (136)
T ss_dssp -CCEEEEEECS-CTT--TSSHHHHHHHHHHHHGGGCCEEEEEECG
T ss_pred chhEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEEEh
Confidence 47 49999876 675 2346667788999999999999888654
No 114
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=34.30 E-value=13 Score=39.11 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=64.4
Q ss_pred EEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCCh------------------hhHHHHHHHHHHCCCCeeEeccC
Q 008028 373 LIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKK------------------PMEQQIEQLEIICPEKARGITKF 434 (580)
Q Consensus 373 ~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~------------------~~~~~i~~l~~~~~~~v~~~~~~ 434 (580)
.+.|++. .+.+..+.+.+....++.-+++|+|.|.- .-.++++.++.++++-++..++-
T Consensus 211 ~v~~i~~---~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~ 287 (461)
T 4g65_A 211 EVFFVAA---SNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVFCGDA 287 (461)
T ss_dssp EEEEEEE---TTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEEESCT
T ss_pred EEEEEec---cchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEEeccc
Confidence 4555554 56777777777665444457888887641 22356777777777655555655
Q ss_pred Ch-HHHH-HHHhcCCEEEecCCC-CCccHHHHHHHHcCCceEEcC
Q 008028 435 ST-PLAH-KIIAGADFMLVPSRF-EPCGLIQLHAMRYGTVPIVAS 476 (580)
Q Consensus 435 ~~-~~~~-~~~~~aDi~l~ps~~-E~~g~~~lEAma~G~PvI~s~ 476 (580)
.. +.+. .=+..+|+++..... |.-=++.+-|-.+|++-+.+.
T Consensus 288 td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~ 332 (461)
T 4g65_A 288 ADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVL 332 (461)
T ss_dssp TCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCcccccc
Confidence 33 3332 347889999877654 555556777888898855544
No 115
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=34.25 E-value=29 Score=33.90 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=25.4
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+|++... +|++|. .+++.|.+.||+|.+++..
T Consensus 13 ~M~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 13 HVKYAVLGA-------TGLLGH---HAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp CCEEEEEST-------TSHHHH---HHHHHHHHTTCEEEEEECT
T ss_pred CCEEEEECC-------CcHHHH---HHHHHHHHCCCEEEEEecC
Confidence 477766554 467765 6788899999999988764
No 116
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=33.54 E-value=25 Score=35.33 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.8
Q ss_pred ceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
|||+-|+.. .||.|. .+..|+.+|++.|.+|.+|=...
T Consensus 1 MkvIav~s~------KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~ 40 (361)
T 3pg5_A 1 MRTISFFNN------KGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40 (361)
T ss_dssp CEEEEBCCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 676666643 688876 66779999999999999997753
No 117
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=33.34 E-value=26 Score=34.27 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.2
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+|+|++... +|++|. .+++.|.+.||+|.++.-.
T Consensus 3 ~~~vlVtGa-------tG~iG~---~l~~~L~~~G~~V~~~~r~ 36 (345)
T 2z1m_A 3 GKRALITGI-------RGQDGA---YLAKLLLEKGYEVYGADRR 36 (345)
T ss_dssp CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECC-------CChHHH---HHHHHHHHCCCEEEEEECC
Confidence 466655443 477775 6788899999999888643
No 118
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=32.98 E-value=35 Score=31.47 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=26.5
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
||+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 2 ~k~vlITGa------s~gIG~---~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGA------SRGIGE---AIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESC------SSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 677777754 577775 7889999999998877653
No 119
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=32.81 E-value=21 Score=33.71 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=25.3
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
||+++|+.- +||+|. .+++.|++.|++|.++..
T Consensus 1 Mk~vlVTGa------s~gIG~---~ia~~l~~~G~~V~~~~r 33 (254)
T 1zmt_A 1 MSTAIVTNV------KHFGGM---GSALRLSEAGHTVACHDE 33 (254)
T ss_dssp -CEEEESST------TSTTHH---HHHHHHHHTTCEEEECCG
T ss_pred CeEEEEeCC------CchHHH---HHHHHHHHCCCEEEEEeC
Confidence 677777754 578886 688999999999887754
No 120
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=32.11 E-value=26 Score=33.11 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=28.2
Q ss_pred ceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||+.|+. .||.|. .+.+|+.+|+++|++|.+|=..
T Consensus 1 M~vI~vs~-------KGGvGKTT~a~nLA~~la~~G~~VlliD~D 38 (269)
T 1cp2_A 1 MRQVAIYG-------KGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp CEEEEEEE-------CTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CcEEEEec-------CCCCcHHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 67666653 477665 6778999999999999998765
No 121
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=31.40 E-value=28 Score=33.50 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=28.9
Q ss_pred ceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
|||+.|+.. .||.|. .+..|+.+|+++|.+|.+|=...
T Consensus 4 ~kvI~v~s~------KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 4 TRVIVVGNE------KGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp CEEEEECCS------SSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 456666543 577665 77889999999999999987654
No 122
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=31.34 E-value=2.2e+02 Score=23.37 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=59.7
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhc---CCEEEecCCC-CCccHHHHHHHHc---CCce
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAG---ADFMLVPSRF-EPCGLIQLHAMRY---GTVP 472 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~---aDi~l~ps~~-E~~g~~~lEAma~---G~Pv 472 (580)
..+++|+.+.. .....+.++-.+..+.......-+...+...+.. .|++++-... +..|+.+++.+.. .+|+
T Consensus 3 ~~~iLivdd~~-~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHH-LIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCH-HHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCH-HHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 35677777654 3444455444443111112222344444445544 7888876543 3356666666653 5676
Q ss_pred EEcCCCCcc----eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 473 IVASTGGLF----DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 473 I~s~~gg~~----e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|+-....-. +.+..|..+++. .|.+.+.+.++|..++..
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFIP----------KSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBCC----------TTSCHHHHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHHHHHHccCCEEEe----------CCCCHHHHHHHHHHHHcC
Confidence 654422212 223346677775 899999999999999884
No 123
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=31.17 E-value=29 Score=32.45 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=28.7
Q ss_pred ceEEEEeecccCccccccHH--HHhccchHHHHhCCCeEEEEEecC
Q 008028 85 MNLVFVGAEVAPWSKTGGLG--DVLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g--~~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
|||+.|+.. .||.| ..+..|+.+|+++|++|.+|=...
T Consensus 2 ~~vi~v~s~------kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSG------KGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECS------STTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECC------CCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 366666543 46655 578889999999999999997754
No 124
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=31.15 E-value=33 Score=32.44 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=28.9
Q ss_pred ceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
|||+.|+.. .||.|. .+..|+.+|++.|++|.+|=...
T Consensus 18 ~~vI~v~s~------kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 18 KSRIAVMSG------KGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp SCEEEEECS------SSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456665543 577764 77889999999999999987654
No 125
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=31.08 E-value=38 Score=28.64 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=29.7
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||+++... + +|....++..+++.+.+.|++|.++...
T Consensus 1 mki~iiy~S--~---~Gnt~~~a~~i~~~l~~~g~~v~~~~~~ 38 (147)
T 1f4p_A 1 PKALIVYGS--T---TGNTEYTAETIARELADAGYEVDSRDAA 38 (147)
T ss_dssp CEEEEEEEC--S---SSHHHHHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CeEEEEEEC--C---cCHHHHHHHHHHHHHHhcCCeeEEEehh
Confidence 677666542 2 5888889999999999999999888653
No 126
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=30.89 E-value=29 Score=33.41 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=23.5
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||++... +|++|. .+++.|.+.||+|.++...
T Consensus 1 m~vlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 33 (312)
T 3ko8_A 1 MRIVVTGG-------AGFIGS---HLVDKLVELGYEVVVVDNL 33 (312)
T ss_dssp CEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEECCC
T ss_pred CEEEEECC-------CChHHH---HHHHHHHhCCCEEEEEeCC
Confidence 56554443 466665 7789999999999988643
No 127
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=30.73 E-value=32 Score=31.38 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=23.9
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||++... +|++|. .+++.|.+.||+|.+++-.
T Consensus 5 ~~ilItGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 5 KKIVLIGA-------SGFVGS---ALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CEEEEETC-------CHHHHH---HHHHHHHTTTCEEEEECSC
T ss_pred CEEEEEcC-------CchHHH---HHHHHHHHCCCEEEEEEcC
Confidence 56655443 466664 7889999999999988764
No 128
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=30.58 E-value=1.3e+02 Score=23.03 Aligned_cols=105 Identities=9% Similarity=0.014 Sum_probs=57.0
Q ss_pred EEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH--hcCCEEEecCCC-CCccHHHHHHHH-----cCCceE
Q 008028 402 QIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII--AGADFMLVPSRF-EPCGLIQLHAMR-----YGTVPI 473 (580)
Q Consensus 402 ~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~--~~aDi~l~ps~~-E~~g~~~lEAma-----~G~PvI 473 (580)
+++|+.+.. ...+.+.+.-...+..+.... +...+...+ ...|++++-... +..|..+++.+. ..+|+|
T Consensus 3 ~iliv~~~~-~~~~~l~~~l~~~g~~v~~~~--~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 3 HILLLEEED-EAATVVCEMLTAAGFKVIWLV--DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp EEEEECCCH-HHHHHHHHHHHHTTCEEEEES--CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred EEEEEeCCH-HHHHHHHHHHHhCCcEEEEec--CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 566666654 234444444444443343322 333333232 257888776543 446777777775 356655
Q ss_pred Ec-CCCCcceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHH
Q 008028 474 VA-STGGLFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAV 519 (580)
Q Consensus 474 ~s-~~gg~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll 519 (580)
+- ......+....|..+++. .|.+.+.+.+.|.+++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVDPLLTAQASAILS----------KPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSSHHHHHHCSEECS----------SCSTTHHHHHHHHTTC
T ss_pred EEeCCCCchhhhhcCHHHhcc----------CCCCHHHHHHHHHHHh
Confidence 43 322222333345566665 7888888888887654
No 129
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=30.41 E-value=37 Score=32.31 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=24.5
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|||++.. +|++|. .+++.|.+.||+|.+++..
T Consensus 3 ~~~ilVtG--------aG~iG~---~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 3 LSKILIAG--------CGDLGL---ELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCEEEEC--------CSHHHH---HHHHHHHHTTCCEEEEECT
T ss_pred CCcEEEEC--------CCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 46777654 256665 6788899999999999765
No 130
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=30.34 E-value=32 Score=32.97 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCC
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYD 129 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~ 129 (580)
+.|||++-... ... ..-+..|.++|.+ +|+|+|++|..+
T Consensus 10 ~~m~ILlTNDD-Gi~------apGi~aL~~~l~~-~~~V~VVAP~~~ 48 (261)
T 3ty2_A 10 PKLRLLLSNDD-GVY------AKGLAILAKTLAD-LGEVDVVAPDRN 48 (261)
T ss_dssp -CCEEEEECSS-CTT------CHHHHHHHHHHTT-TSEEEEEEESSC
T ss_pred CCCeEEEEcCC-CCC------CHHHHHHHHHHHh-cCCEEEEecCCC
Confidence 45999887775 222 2334578888887 789999999754
No 131
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=30.14 E-value=31 Score=33.45 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=29.8
Q ss_pred CceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
.|||+.|+ . .||.|. .+.+|+.+|+++|.+|.+|=...
T Consensus 40 ~~~vI~v~-~------KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVY-G------KGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEE-C------STTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEE-C------CCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46777776 4 466664 77889999999999999997753
No 132
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=30.11 E-value=2.1e+02 Score=22.72 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=62.3
Q ss_pred eEEEEEecCChhhHHHHHHHHHHCCCCee-EeccCChHHHHHHHhcCCEEEecCCC-CCccHHHHHHHHc---CCceEE-
Q 008028 401 VQIVVLGTGKKPMEQQIEQLEIICPEKAR-GITKFSTPLAHKIIAGADFMLVPSRF-EPCGLIQLHAMRY---GTVPIV- 474 (580)
Q Consensus 401 v~lii~G~g~~~~~~~i~~l~~~~~~~v~-~~~~~~~~~~~~~~~~aDi~l~ps~~-E~~g~~~lEAma~---G~PvI~- 474 (580)
++++|+.+.. ...+.+.++-.+.+..+. ............--...|++++-... +..|..+++.+.. .+|+|+
T Consensus 2 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 80 (134)
T 3f6c_A 2 LNAIIIDDHP-LAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 80 (134)
T ss_dssp EEEEEECCCH-HHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred eEEEEEcCCH-HHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEE
Confidence 4677777654 344555555555443333 22222222211122467888876554 4567777766654 455444
Q ss_pred cCCCC---cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 475 ASTGG---LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 475 s~~gg---~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|.... ..+.+..|..+++. .|.+.+.+.++|..+++.
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 81 SAKNDHFYGKHCADAGANGFVS----------KKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp ECC---CTHHHHHHTTCSEEEE----------GGGCTHHHHHHHHHHHTT
T ss_pred eCCCChHHHHHHHHhCCCEEEe----------CCCCHHHHHHHHHHHHCC
Confidence 33221 22234457788887 899999999999999874
No 133
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=30.10 E-value=33 Score=33.85 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=25.3
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+|++... +|++|. .++++|.+.||+|.+++-.
T Consensus 10 ~~~IlVtGa-------tG~iG~---~l~~~L~~~g~~V~~l~R~ 43 (346)
T 3i6i_A 10 KGRVLIAGA-------TGFIGQ---FVATASLDAHRPTYILARP 43 (346)
T ss_dssp -CCEEEECT-------TSHHHH---HHHHHHHHTTCCEEEEECS
T ss_pred CCeEEEECC-------CcHHHH---HHHHHHHHCCCCEEEEECC
Confidence 467777664 477775 6778889999999988764
No 134
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=29.96 E-value=42 Score=31.14 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=26.4
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
||+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 3 ~k~vlVTGa------s~GIG~---a~a~~l~~~G~~V~~~~r~ 36 (235)
T 3l6e_A 3 LGHIIVTGA------GSGLGR---ALTIGLVERGHQVSMMGRR 36 (235)
T ss_dssp CCEEEEEST------TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CCHHHH---HHHHHHHHCCCEEEEEECC
Confidence 467777754 588886 7889999999998887654
No 135
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.38 E-value=1.6e+02 Score=23.58 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=59.9
Q ss_pred eEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC------CCccHHHHHHHH---cC
Q 008028 401 VQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF------EPCGLIQLHAMR---YG 469 (580)
Q Consensus 401 v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~------E~~g~~~lEAma---~G 469 (580)
.+++|+.+.. .....+.++-.+.+..+. ..-+...+...+. ..|++++-... +..|..+++.+. ..
T Consensus 4 ~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 4 GTIIIVDDNK-GVLTAVQLLLKNHFSKVI--TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTTSSEEE--EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred ceEEEEeCCH-HHHHHHHHHHHhCCcEEE--EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 4667776544 244445544444332333 2223444433443 35777765443 345666666554 35
Q ss_pred CceEEcC-CCC---cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 470 TVPIVAS-TGG---LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 470 ~PvI~s~-~gg---~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
+|+|+-. ... ..+.+..|..+++. .|.+.+.+.++|..+++.
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVV----------KPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEE----------ESCCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheee----------CCCCHHHHHHHHHHHHHh
Confidence 6655443 222 12223456778887 899999999999998874
No 136
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=29.36 E-value=2.5e+02 Score=23.40 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=69.4
Q ss_pred cCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHH-----c
Q 008028 397 MGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMR-----Y 468 (580)
Q Consensus 397 ~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma-----~ 468 (580)
.+++.+++|+=+.. ...+.++++-.+.+...+. ..-++..+-.++. ..|++++=-.. +--|+-+++.+. .
T Consensus 9 m~k~~rILiVDD~~-~~r~~l~~~L~~~G~~~v~-~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 9 LNKNMKILIVDDFS-TMRRIVKNLLRDLGFNNTQ-EADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp CCTTCCEEEECSCH-HHHHHHHHHHHHTTCCCEE-EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred hCCCCEEEEEeCCH-HHHHHHHHHHHHcCCcEEE-EECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 34578888886644 3555666665555533222 2235555544444 46877764443 456888888775 3
Q ss_pred CCceEEc-CCCCcce---eEecCceeEEEeecccccccCCcccHHHHHHHHHHHHH
Q 008028 469 GTVPIVA-STGGLFD---TVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVA 520 (580)
Q Consensus 469 G~PvI~s-~~gg~~e---~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~ 520 (580)
.+|+|.- ..+...+ ...-|.++++. .|-+.+.+.++|.++++
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~----------KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQAGVNGYIV----------KPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCCEEEE----------SSCCHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCCEEEE----------CCCCHHHHHHHHHHHHh
Confidence 5776644 3333222 23457788887 99999999999988765
No 137
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=29.27 E-value=37 Score=33.22 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=24.2
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+|++... +|++|. .+++.|.+.|++|.++...
T Consensus 21 ~~~vlVTGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 21 MKKVFITGI-------CGQIGS---HIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEeCC-------ccHHHH---HHHHHHHHCCCEEEEEECC
Confidence 456554443 477775 6788899999999988654
No 138
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=29.01 E-value=36 Score=33.12 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=24.7
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
++.|+|++... +|++|. .+++.|.+.||+|.++...
T Consensus 12 ~~~~~vlVTGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 47 (335)
T 1rpn_A 12 SMTRSALVTGI-------TGQDGA---YLAKLLLEKGYRVHGLVAR 47 (335)
T ss_dssp ---CEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEECC
T ss_pred ccCCeEEEECC-------CChHHH---HHHHHHHHCCCeEEEEeCC
Confidence 34578765543 467765 6788899999999988754
No 139
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=28.96 E-value=38 Score=33.26 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
..|+|++... +|++|. .+++.|.+.|++|.++...
T Consensus 26 ~~~~vlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 26 DRKRILITGG-------AGFVGS---HLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp -CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEEcC-------ccHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 3466655443 466665 6788899999999988753
No 140
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=28.47 E-value=46 Score=30.19 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=24.5
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHH-hCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALA-ARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~-~~G~~V~vi~~~ 127 (580)
||.++|+.- +||+|. .+++.|. +.||+|.+++..
T Consensus 5 mk~vlVtGa------sg~iG~---~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 5 YXYITILGA------AGQIAQ---XLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp CSEEEEEST------TSHHHH---HHHHHHHHHCCCEEEEEESS
T ss_pred EEEEEEEeC------CcHHHH---HHHHHHHhcCCceEEEEecC
Confidence 675555532 577775 6788888 899999888754
No 141
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=28.45 E-value=35 Score=31.57 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=25.6
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCC-CeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARG-HRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G-~~V~vi~~~ 127 (580)
.||.++|+.- +||+|. .+++.|.+.| ++|.+++-.
T Consensus 22 ~mk~vlVtGa------tG~iG~---~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 22 HMKNVLILGA------GGQIAR---HVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp CCEEEEEETT------TSHHHH---HHHHHHTTCTTEEEEEEESS
T ss_pred cccEEEEEeC------CcHHHH---HHHHHHHhCCCceEEEEEcC
Confidence 3666666643 577775 6788999999 898888754
No 142
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=28.40 E-value=1.8e+02 Score=26.97 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=24.1
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhC--CCeEEEEEec
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAAR--GHRVMSVAPR 127 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~--G~~V~vi~~~ 127 (580)
+.|||+|+... .+..+..+.+++.+. +++|..|...
T Consensus 21 ~~~rI~~l~SG---------~g~~~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 21 HMIRIGVLISG---------SGTNLQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp TCEEEEEEESS---------CCHHHHHHHHHHHTTSSSEEEEEEEES
T ss_pred CCcEEEEEEeC---------CcHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 34799999742 234566788888776 6787666554
No 143
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=28.02 E-value=36 Score=31.28 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=27.9
Q ss_pred eEEEEeecccCccccccHH--HHhccchHHHHhCCCeEEEEEecC
Q 008028 86 NLVFVGAEVAPWSKTGGLG--DVLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g--~~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
|++.|+.. .||.| ..+..|+.+|+++|++|.+|-...
T Consensus 3 ~~i~v~s~------kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSG------KGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECS------STTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecC------CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 56655543 46555 578889999999999999997754
No 144
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=27.83 E-value=45 Score=33.32 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.3
Q ss_pred cccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 100 TGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 100 ~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
.||.|. .+..++.+|++.|++|.+|....
T Consensus 34 KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 34 KGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 477775 67789999999999999999764
No 145
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=27.73 E-value=2.4e+02 Score=25.95 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=29.2
Q ss_pred HHHhcCCEEEecCCCCCccHH--HHHHHH------cCCceEEcCCCCcce
Q 008028 441 KIIAGADFMLVPSRFEPCGLI--QLHAMR------YGTVPIVASTGGLFD 482 (580)
Q Consensus 441 ~~~~~aDi~l~ps~~E~~g~~--~lEAma------~G~PvI~s~~gg~~e 482 (580)
.++..||.+|.-+ -++|+- ++|++. .++|++.-+..|.|+
T Consensus 101 ~~~~~sda~I~lp--GG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~ 148 (216)
T 1ydh_A 101 AMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYN 148 (216)
T ss_dssp HHHHHCSEEEECS--CSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTH
T ss_pred HHHHhCCEEEEeC--CCccHHHHHHHHHHHHHhcccCCCEEEecCCccch
Confidence 4778899988754 257765 677764 799999999766554
No 146
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=27.56 E-value=39 Score=33.23 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=25.1
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+|++... +|++|. .+++.|.+.||+|.++.-.
T Consensus 25 ~~~vlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 25 PKTWLITGV-------AGFIGS---NLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEECC-------CcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 467765543 466665 7888899999999988764
No 147
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=27.33 E-value=41 Score=32.82 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.1
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 100 TGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+||+|. .+++.|.+.||+|.++...
T Consensus 14 tG~iG~---~l~~~L~~~G~~V~~~~r~ 38 (341)
T 3enk_A 14 AGYIGS---HTAVELLAHGYDVVIADNL 38 (341)
T ss_dssp TSHHHH---HHHHHHHHTTCEEEEECCC
T ss_pred CcHHHH---HHHHHHHHCCCcEEEEecC
Confidence 577775 6889999999999888654
No 148
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=27.25 E-value=39 Score=33.30 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=28.8
Q ss_pred CceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
+|+++.|+.. .||.|. .+..|+.+|++.|++|.+|....
T Consensus 12 gm~~i~v~sg------KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 12 GKTTFVFIGG------KGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp TBCEEEEEEE------STTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEEeC------CCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5554444433 477665 67789999999999999999864
No 149
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=26.55 E-value=2.1e+02 Score=23.26 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=42.5
Q ss_pred hcCCEEEecCCC-CCccHHHHHHHHc---CCceEEcC-CCC---cceeEecCceeEEEeecccccccCCcccHHHHHHHH
Q 008028 444 AGADFMLVPSRF-EPCGLIQLHAMRY---GTVPIVAS-TGG---LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHV 515 (580)
Q Consensus 444 ~~aDi~l~ps~~-E~~g~~~lEAma~---G~PvI~s~-~gg---~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l 515 (580)
...|++++-... +.-|+.+++.+.. .+|+|+-. ... ..+.+..|..+++. .|.+.+.+..+|
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~----------Kp~~~~~L~~~i 135 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLR----------WPLEPRALDDAL 135 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEE----------SSCCHHHHHHHH
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEc----------CCCCHHHHHHHH
Confidence 456777765543 3345555555443 55655433 222 12234456778887 899999999999
Q ss_pred HHHHHh
Q 008028 516 NRAVAT 521 (580)
Q Consensus 516 ~~ll~~ 521 (580)
.++++.
T Consensus 136 ~~~~~~ 141 (146)
T 4dad_A 136 KRAAAQ 141 (146)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 999874
No 150
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=26.52 E-value=61 Score=28.87 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=31.4
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|||++|... | .|-...++..+++.+.+.|++|.++...
T Consensus 6 ~kilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 6 PYILVLYYS--R---HGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp CEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred ceEEEEEeC--C---CChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 589988864 4 4778888999999999999999988764
No 151
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=26.48 E-value=51 Score=30.53 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=25.7
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 7 ~k~vlVTGa------s~gIG~---~ia~~l~~~G~~V~~~~r~ 40 (241)
T 1dhr_A 7 ARRVLVYGG------RGALGS---RCVQAFRARNWWVASIDVV 40 (241)
T ss_dssp CCEEEEETT------TSHHHH---HHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEECC------CcHHHH---HHHHHHHhCCCEEEEEeCC
Confidence 456666653 578886 6889999999999887654
No 152
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=26.41 E-value=36 Score=33.14 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCC--CeEEEEEe
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARG--HRVMSVAP 126 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G--~~V~vi~~ 126 (580)
+.|||++... +|++|. .+++.|.+.| |+|.++..
T Consensus 2 ~~m~vlVTGa-------tG~iG~---~l~~~L~~~g~~~~V~~~~r 37 (336)
T 2hun_A 2 HSMKLLVTGG-------MGFIGS---NFIRYILEKHPDWEVINIDK 37 (336)
T ss_dssp -CCEEEEETT-------TSHHHH---HHHHHHHHHCTTCEEEEEEC
T ss_pred CCCeEEEECC-------CchHHH---HHHHHHHHhCCCCEEEEEec
Confidence 3588665443 477775 6778888886 88887754
No 153
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=26.36 E-value=35 Score=34.11 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=23.1
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEE
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSV 124 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi 124 (580)
.|||++|... | .|+ .++..|++.|++|+|+
T Consensus 1 sm~V~IVGaG--p----aGl-----~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 1 SMHVGIIGAG--I----GGT-----CLAHGLRKHGIKVTIY 30 (412)
T ss_dssp CCEEEEECCS--H----HHH-----HHHHHHHHTTCEEEEE
T ss_pred CCEEEEECcC--H----HHH-----HHHHHHHhCCCCEEEE
Confidence 3899999863 2 344 4667789999999998
No 154
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=26.34 E-value=1.8e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=30.5
Q ss_pred HHHhcCCEEEecCCCCCccHH--HHHHHH------cCCceEEcCCCCccee
Q 008028 441 KIIAGADFMLVPSRFEPCGLI--QLHAMR------YGTVPIVASTGGLFDT 483 (580)
Q Consensus 441 ~~~~~aDi~l~ps~~E~~g~~--~lEAma------~G~PvI~s~~gg~~e~ 483 (580)
.++..||.+|.-+= ++|+- ++|++. +++|++.-+..|.|+-
T Consensus 104 ~m~~~sda~IalPG--G~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~ 152 (189)
T 3sbx_A 104 VMEDRANAFITLPG--GVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDG 152 (189)
T ss_dssp HHHHHCSEEEECSC--CHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHH
T ss_pred HHHHHCCEEEEeCC--CcchHHHHHHHHHHHHhcccCCCEEEecCCccchH
Confidence 47889999886653 67775 777774 6899999998665553
No 155
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=26.30 E-value=40 Score=31.63 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=27.8
Q ss_pred ceEEEEeecccCccccccHH--HHhccchHHHHhCCCeEEEEEecC
Q 008028 85 MNLVFVGAEVAPWSKTGGLG--DVLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g--~~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
||++.|+.. .||.| ..+..|+.+|++.|++|.+|-...
T Consensus 2 ~~~I~v~s~------kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 2 VRTITVASG------KGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp CEEEEEEES------SSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECC------CCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 355555543 35555 578889999999999999997653
No 156
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=26.30 E-value=40 Score=32.50 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.7
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 100 TGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
+|++|. .+++.|.+.||+|.++..
T Consensus 9 tG~iG~---~l~~~L~~~G~~V~~~~r 32 (311)
T 2p5y_A 9 AGFIGS---HIVEDLLARGLEVAVLDN 32 (311)
T ss_dssp TSHHHH---HHHHHHHTTTCEEEEECC
T ss_pred CcHHHH---HHHHHHHHCCCEEEEEEC
Confidence 466665 678899999999988754
No 157
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=26.28 E-value=2.7e+02 Score=22.76 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH--hcCCEEEecCCC-CCccHHHHHHHHc---CCce
Q 008028 399 GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII--AGADFMLVPSRF-EPCGLIQLHAMRY---GTVP 472 (580)
Q Consensus 399 ~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~--~~aDi~l~ps~~-E~~g~~~lEAma~---G~Pv 472 (580)
...+++|+.+.. ...+.+.++-.+.+........-+...+...+ ...|++++-... +..|..+++.+.. .+|+
T Consensus 14 ~~~~iLivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 14 EKVRVVVGDDHP-LFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp CCEEEEEECSSH-HHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEEEcCCH-HHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 356677777644 23344444444333211111122333333333 357887775543 4456666666654 4555
Q ss_pred EEc-CCCCc---ceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 473 IVA-STGGL---FDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 473 I~s-~~gg~---~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|+- ..... .+.+..|..+++. .|.+.+.+.++|.+++..
T Consensus 93 i~~s~~~~~~~~~~~~~~g~~~~l~----------Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQGAAGFLL----------KDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEE----------TTCCHHHHHHHHHHHHHC
T ss_pred EEEEccCCHHHHHHHHHcCCCEEEe----------cCCCHHHHHHHHHHHHcC
Confidence 443 33221 2234457788887 999999999999999885
No 158
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.25 E-value=2.5e+02 Score=22.51 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=65.8
Q ss_pred eEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh----cCCEEEecCCC-CCccHHHHHHHHc---CCce
Q 008028 401 VQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA----GADFMLVPSRF-EPCGLIQLHAMRY---GTVP 472 (580)
Q Consensus 401 v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~----~aDi~l~ps~~-E~~g~~~lEAma~---G~Pv 472 (580)
.+++|+.+.. ...+.+.++-.+.+..+. ..-+...+...+. ..|++++-... +..|+.+++.+.. .+|+
T Consensus 4 ~~ilivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 4 AKILVIDDES-TILQNIKFLLEIDGNEVL--TASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred CEEEEEcCCH-HHHHHHHHHHHhCCceEE--EeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 4677777654 345555555555543333 2234444444444 67888876553 4567666666543 5665
Q ss_pred EEcC-CCC---cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 473 IVAS-TGG---LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 473 I~s~-~gg---~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|+-. ... ..+.+..|..+++. .|.+.+.+..+|..+++.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLR----------KPVTAQDLSIAINNAINR 123 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEe----------CCCCHHHHHHHHHHHHHH
Confidence 5433 322 22334557788887 999999999999999884
No 159
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.12 E-value=2.5e+02 Score=22.48 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=63.9
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHHc-----CCc
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMRY-----GTV 471 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma~-----G~P 471 (580)
+.+++|+.+.. .....+..+-.+.+..+. ..-+...+...+. ..|++++=... +.-|+.+++.+.. .+|
T Consensus 4 ~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~p 80 (136)
T 3t6k_A 4 PHTLLIVDDDD-TVAEMLELVLRGAGYEVR--RAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLP 80 (136)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCC
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHHCCCEEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCcc
Confidence 34666666544 344455554444443332 2234444433333 46888875543 4467777776643 566
Q ss_pred eEEcC-CCCcc---eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 472 PIVAS-TGGLF---DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 472 vI~s~-~gg~~---e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
+|+-. .+... +.+..|..+++. .|.+.+++..+|.+++..
T Consensus 81 ii~~t~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 81 ILMLTAQGDISAKIAGFEAGANDYLA----------KPFEPQELVYRVKNILAR 124 (136)
T ss_dssp EEEEECTTCHHHHHHHHHHTCSEEEE----------TTCCHHHHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEe----------CCCCHHHHHHHHHHHHhc
Confidence 55433 33222 223457788887 999999999999999884
No 160
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.06 E-value=2.4e+02 Score=22.18 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=60.3
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHHc---CCceE
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMRY---GTVPI 473 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma~---G~PvI 473 (580)
+.+++|+.+.. .....+.++-.+.+..+.. .-+...+...+. ..|++++-... +..|..+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 7 GKQILIVEDEQ-VFRSLLDSWFSSLGATTVL--AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TCEEEEECSCH-HHHHHHHHHHHHTTCEEEE--ESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhCCceEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 45778887654 2445555555554433332 234555544543 36888775543 4467777766654 45655
Q ss_pred EcC-CCCc---ceeEecCceeEEEeecccccccCCcc-cHHHHHHHHHHHHHh
Q 008028 474 VAS-TGGL---FDTVKEGITGFQMRSFHVECDRVDLA-DVAAIAKHVNRAVAT 521 (580)
Q Consensus 474 ~s~-~gg~---~e~i~~~~~G~~~~~~~~~~~~v~~~-d~~~la~~l~~ll~~ 521 (580)
+-. .... .+.+..|..+++. .|. +.+.+.+.+.+++..
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLL----------KPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEE----------SCC---CHHHHHHHHHHC-
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEe----------CCCCcHHHHHHHHHHHhch
Confidence 433 3221 2234457778887 887 889999999988763
No 161
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=25.91 E-value=59 Score=31.54 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=24.4
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
++|+|++... +|++|. .+++.|.+.||+|.++..
T Consensus 10 ~~~~vlVTGa-------tG~iG~---~l~~~L~~~g~~V~~~~r 43 (342)
T 1y1p_A 10 EGSLVLVTGA-------NGFVAS---HVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp TTCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECC-------ccHHHH---HHHHHHHHCCCEEEEEeC
Confidence 3567665443 477775 678889999999988764
No 162
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=25.83 E-value=43 Score=32.09 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=30.3
Q ss_pred CceEEEEeecccCccccccHH--HHhccchHHHHhCCCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLG--DVLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g--~~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
.||++.|+.. .||.| ..+.+|+.+|++.|.+|.+|-...
T Consensus 81 ~~kvI~vts~------kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 81 AVQSIVITSE------APGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCCEEEEECS------STTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECC------CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4788777753 35544 578899999999999999997653
No 163
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=25.77 E-value=55 Score=30.02 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=19.5
Q ss_pred cccHHHHhccchHHHHhC--CCeEEEEEec
Q 008028 100 TGGLGDVLGGLPPALAAR--GHRVMSVAPR 127 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~--G~~V~vi~~~ 127 (580)
+||+|. .+++.|.+. |++|.+++..
T Consensus 13 sG~iG~---~l~~~l~~~~~g~~V~~~~r~ 39 (253)
T 1xq6_A 13 SGRTGQ---IVYKKLKEGSDKFVAKGLVRS 39 (253)
T ss_dssp TSHHHH---HHHHHHHHTTTTCEEEEEESC
T ss_pred CcHHHH---HHHHHHHhcCCCcEEEEEEcC
Confidence 477775 678889998 8999888653
No 164
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=25.74 E-value=56 Score=30.74 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=24.7
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
|+++|+.- +||+|. .+++.|.+.|++|.++..
T Consensus 8 k~vlVTGa------s~gIG~---~ia~~l~~~G~~V~~~~r 39 (267)
T 2gdz_A 8 KVALVTGA------AQGIGR---AFAEALLLKGAKVALVDW 39 (267)
T ss_dssp CEEEEETT------TSHHHH---HHHHHHHHTTCEEEEEES
T ss_pred CEEEEECC------CCcHHH---HHHHHHHHCCCEEEEEEC
Confidence 56667653 578886 678999999999988764
No 165
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=25.72 E-value=47 Score=35.04 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=26.0
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+|||++... +|.+|. .+++.|.+.||+|.+++-.
T Consensus 147 ~m~VLVTGa-------tG~IG~---~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 147 PLTVAITGS-------RGLVGR---ALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCEEEEEST-------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECC-------CCHHHH---HHHHHHHHCCCEEEEEECC
Confidence 588876554 466665 6788999999999988764
No 166
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=25.69 E-value=2.6e+02 Score=22.40 Aligned_cols=107 Identities=7% Similarity=0.028 Sum_probs=57.2
Q ss_pred eEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH--hcCCEEEecCCC-CCccHHHHHHHH-----cCCce
Q 008028 401 VQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII--AGADFMLVPSRF-EPCGLIQLHAMR-----YGTVP 472 (580)
Q Consensus 401 v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~--~~aDi~l~ps~~-E~~g~~~lEAma-----~G~Pv 472 (580)
.+++|+.+.. .....+.++-.+. ..+.. .-+...+...+ ...|++++-... +.-|..+++.+. ..+|+
T Consensus 4 ~~iLivdd~~-~~~~~l~~~l~~~-~~v~~--~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 4 KKILIIDQQD-FSRIELKNFLDSE-YLVIE--SKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CEEEEECSCH-HHHHHHHHHHTTT-SEEEE--ESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CEEEEEeCCH-HHHHHHHHHHHhc-ceEEE--eCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 4566666543 2344444444333 22222 22333333333 356888776543 345666666665 45665
Q ss_pred EEcCCCC----cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 473 IVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 473 I~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|+-.... ..+.+..|..+++. .|.+.+.+.++|..++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLT----------KPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeee----------CCCCHHHHHHHHHHHHhh
Confidence 5433222 22234456778887 999999999999998884
No 167
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=25.66 E-value=37 Score=33.78 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=30.7
Q ss_pred CceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
.++|++++. .||.|. .+..++.+|++.|.+|.+|....
T Consensus 15 ~~~i~~~sg-------kGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 15 SLRWIFVGG-------KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp TCCEEEEEC-------STTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred CeEEEEEeC-------CCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 468888875 477765 67789999999999999999863
No 168
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=25.60 E-value=40 Score=32.65 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=24.4
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+|+++.. +|++|. .++++|.+.||+|.+++-.
T Consensus 5 ~~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 37 (321)
T 3c1o_A 5 EKIIIYGG-------TGYIGK---FMVRASLSFSHPTFIYARP 37 (321)
T ss_dssp CCEEEETT-------TSTTHH---HHHHHHHHTTCCEEEEECC
T ss_pred cEEEEEcC-------CchhHH---HHHHHHHhCCCcEEEEECC
Confidence 56665553 477776 6788899999999988754
No 169
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=25.51 E-value=40 Score=31.00 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=24.8
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCC--eEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGH--RVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~--~V~vi~~~ 127 (580)
+|+|++... +||+|. .+++.|.+.|+ +|.+++..
T Consensus 18 ~~~vlVtGa-------sg~iG~---~l~~~L~~~G~~~~V~~~~r~ 53 (242)
T 2bka_A 18 NKSVFILGA-------SGETGR---VLLKEILEQGLFSKVTLIGRR 53 (242)
T ss_dssp CCEEEEECT-------TSHHHH---HHHHHHHHHTCCSEEEEEESS
T ss_pred CCeEEEECC-------CcHHHH---HHHHHHHcCCCCCEEEEEEcC
Confidence 456655443 578876 67888999999 99888654
No 170
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=25.12 E-value=45 Score=32.85 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=24.8
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+|+|++... +|++|. .+++.|.+.||+|.++...
T Consensus 9 ~~~vlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 42 (357)
T 1rkx_A 9 GKRVFVTGH-------TGFKGG---WLSLWLQTMGATVKGYSLT 42 (357)
T ss_dssp TCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECC-------CchHHH---HHHHHHHhCCCeEEEEeCC
Confidence 467665543 477775 6788899999999988754
No 171
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=24.90 E-value=2.8e+02 Score=22.59 Aligned_cols=111 Identities=9% Similarity=0.068 Sum_probs=64.4
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh---------cCCEEEecCCC-CCccHHHHHHHHc-
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA---------GADFMLVPSRF-EPCGLIQLHAMRY- 468 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~---------~aDi~l~ps~~-E~~g~~~lEAma~- 468 (580)
+.+++|+.+.. .....++.+-.+.+........-+...+...+. ..|++++=... +.-|..+++.+..
T Consensus 8 ~~~ILivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 8 PKVILLVEDSK-ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CEEEEEECCCH-HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCeEEEEECCH-HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 46777777654 344555555444332112222234444444554 47888875544 3457777777753
Q ss_pred ----CCceEE-cCCCCc---ceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 469 ----GTVPIV-ASTGGL---FDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 469 ----G~PvI~-s~~gg~---~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
.+|+|. |..... .+.+..|..+++. .|.+.+.+.++|.+++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~----------KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT----------KSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHHH
Confidence 456544 333322 2233457788887 999999999999888663
No 172
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=24.84 E-value=47 Score=31.16 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=27.3
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.||.++|+.- +||+|. .+++.|++.|++|.++..+
T Consensus 6 ~~k~vlVTGa------s~gIG~---~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 6 FVRHALITAG------TKGLGK---QVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp CCCEEEETTT------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred ccCEEEEeCC------CchhHH---HHHHHHHHCCCEEEEEcCC
Confidence 3678888754 577775 7899999999999887654
No 173
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=24.77 E-value=43 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=23.5
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEE
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVA 125 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~ 125 (580)
||.++|+.- +||+|. .+++.|.++|++|.++.
T Consensus 1 ~k~vlITGa------sggiG~---~~a~~l~~~G~~v~~~~ 32 (245)
T 2ph3_A 1 MRKALITGA------SRGIGR---AIALRLAEDGFALAIHY 32 (245)
T ss_dssp CCEEEETTT------TSHHHH---HHHHHHHTTTCEEEEEE
T ss_pred CCEEEEeCC------CchHHH---HHHHHHHHCCCEEEEEc
Confidence 455566543 577775 78899999999998874
No 174
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=24.62 E-value=91 Score=27.07 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=29.6
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+..||++++-.- |. .--.-..+-.++..|.+.||+|+|-+-.
T Consensus 4 ~~~m~~LilLGC--PE--~Pvq~p~~lYl~~~Lk~~G~~v~VA~np 45 (157)
T 1kjn_A 4 ESTGKALMVLGC--PE--SPVQIPLAIYTSHKLKKKGFRVTVTANP 45 (157)
T ss_dssp --CCEEEEECCC--SC--STTHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred ccceeeeEEecC--CC--CcchhhHHHHHHHHHHhcCCeeEEecCH
Confidence 346998777542 32 2335567778999999999999998753
No 175
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=24.60 E-value=44 Score=32.17 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=22.9
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
|+|++... +|++|. .+++.|.+.||+|.++..
T Consensus 3 ~~vlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~r 34 (315)
T 2ydy_A 3 RRVLVTGA-------TGLLGR---AVHKEFQQNNWHAVGCGF 34 (315)
T ss_dssp CEEEEETT-------TSHHHH---HHHHHHHTTTCEEEEEC-
T ss_pred CeEEEECC-------CcHHHH---HHHHHHHhCCCeEEEEcc
Confidence 56655443 466765 678899999999988864
No 176
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=24.45 E-value=3.5e+02 Score=23.50 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=24.6
Q ss_pred HHHhcCCEEEecCC----CCC-ccHH--HHHHHHcCCceEEcCC
Q 008028 441 KIIAGADFMLVPSR----FEP-CGLI--QLHAMRYGTVPIVAST 477 (580)
Q Consensus 441 ~~~~~aDi~l~ps~----~E~-~g~~--~lEAma~G~PvI~s~~ 477 (580)
..+..||++|..-. .++ .|+. +-=|.+.|+|||+-..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 58999999987632 133 3333 3347789999988553
No 177
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=24.27 E-value=2.8e+02 Score=27.16 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=49.8
Q ss_pred CcEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHhc--CCE
Q 008028 371 IPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIAG--ADF 448 (580)
Q Consensus 371 ~~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~--aDi 448 (580)
...|+.+|-=. -|....+.++... ++++++-+-+... +..+ ..++. +.. |.. ...+++. .|+
T Consensus 7 ~~rvgiiG~G~--~g~~~~~~~~~~~--~~~~l~av~d~~~---~~~~---~~~~~-~~~---~~~--~~~ll~~~~vD~ 70 (352)
T 3kux_A 7 KIKVGLLGYGY--ASKTFHAPLIMGT--PGLELAGVSSSDA---SKVH---ADWPA-IPV---VSD--PQMLFNDPSIDL 70 (352)
T ss_dssp CEEEEEECCSH--HHHHTHHHHHHTS--TTEEEEEEECSCH---HHHH---TTCSS-CCE---ESC--HHHHHHCSSCCE
T ss_pred CceEEEECCCH--HHHHHHHHHHhhC--CCcEEEEEECCCH---HHHH---hhCCC-Cce---ECC--HHHHhcCCCCCE
Confidence 35677777411 1111234444433 5788875555442 1111 23321 222 221 2335665 899
Q ss_pred EEecCCCCCccHHHHHHHHcCCceEEcC
Q 008028 449 MLVPSRFEPCGLIQLHAMRYGTVPIVAS 476 (580)
Q Consensus 449 ~l~ps~~E~~g~~~lEAma~G~PvI~s~ 476 (580)
+++.+......-...+|+..|++|++-.
T Consensus 71 V~i~tp~~~H~~~~~~al~aGkhV~~EK 98 (352)
T 3kux_A 71 IVIPTPNDTHFPLAQSALAAGKHVVVDK 98 (352)
T ss_dssp EEECSCTTTHHHHHHHHHHTTCEEEECS
T ss_pred EEEeCChHHHHHHHHHHHHCCCcEEEEC
Confidence 9888765555666888999999988765
No 178
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.16 E-value=2.9e+02 Score=22.53 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHH---cCCce
Q 008028 399 GNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMR---YGTVP 472 (580)
Q Consensus 399 ~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma---~G~Pv 472 (580)
.+.+++|+.+.. .....+.++-...+..+. ..-+...+...+. ..|++++-... +.-|..+++.+. ..+|+
T Consensus 6 ~~~~iLivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 6 KNYTVMLVDDEQ-PILNSLKRLIKRLGCNII--TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp SCCEEEEECSCH-HHHHHHHHHHHTTTCEEE--EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEE
T ss_pred CCCeEEEEcCCH-HHHHHHHHHHHHcCCeEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcE
Confidence 356777777654 244444444444433333 2234444444443 46888775543 345666666654 35665
Q ss_pred EEcC-CCCc---ceeEecC-ceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 473 IVAS-TGGL---FDTVKEG-ITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 473 I~s~-~gg~---~e~i~~~-~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|+-. .... .+.+..| ..+++. .|.+.+.+...|..++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~----------kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLL----------KPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEE----------SSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeee----------CCCCHHHHHHHHHHHHHH
Confidence 5433 2221 1122334 678887 899999999999998874
No 179
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=24.08 E-value=59 Score=29.94 Aligned_cols=36 Identities=25% Similarity=0.150 Sum_probs=28.3
Q ss_pred CceEEEEeecccCccccccHHHH--hccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDV--LGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~--~~~l~~aL~~~G~~V~vi~~~ 127 (580)
++||++.. +||.+.+ +.++.+.|.+.|++|.+|-..
T Consensus 5 ~k~Illgi--------TGsiaayk~~~~ll~~L~~~g~eV~vv~T~ 42 (207)
T 3mcu_A 5 GKRIGFGF--------TGSHCTYEEVMPHLEKLIAEGAEVRPVVSY 42 (207)
T ss_dssp TCEEEEEE--------CSCGGGGTTSHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEEE--------EChHHHHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 45777665 4666666 678999999999999999875
No 180
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=24.08 E-value=59 Score=30.30 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=29.9
Q ss_pred CceEEEEeecccCccccccH-HHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGL-GDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~-g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+|||++|... |. .+|. ..++..+.++|.+.||+|.++-+.
T Consensus 1 ~mkiLiI~gs--pr--~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 1 GKKVLIVYAH--QE--PKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCEEEEEEeC--CC--CCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 4899999985 54 3444 456666778888889999999764
No 181
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=23.99 E-value=51 Score=32.11 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=18.9
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 100 TGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
+|++|. .+++.|.+.||+|.++..
T Consensus 9 tG~iG~---~l~~~L~~~G~~V~~~~~ 32 (338)
T 1udb_A 9 SGYIGS---HTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp TSHHHH---HHHHHHHHTTCEEEEEEC
T ss_pred CCHHHH---HHHHHHHHCCCEEEEEec
Confidence 466665 678899999999998753
No 182
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=23.92 E-value=33 Score=33.19 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=22.5
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEE
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVA 125 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~ 125 (580)
.|+|++... +|++|. .+++.|.+.||+|.++.
T Consensus 3 ~~~ilVtGa-------tG~iG~---~l~~~L~~~g~~v~~~~ 34 (321)
T 1e6u_A 3 KQRVFIAGH-------RGMVGS---AIRRQLEQRGDVELVLR 34 (321)
T ss_dssp CEEEEEETT-------TSHHHH---HHHHHHTTCTTEEEECC
T ss_pred CCEEEEECC-------CcHHHH---HHHHHHHhCCCeEEEEe
Confidence 467765543 466665 67888999999987754
No 183
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=23.91 E-value=54 Score=30.99 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=26.9
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.+|+++|+.- +||+|. .+++.|++.|++|.++..+
T Consensus 25 ~~k~vlITGa------s~gIG~---a~a~~l~~~G~~V~~~~~~ 59 (272)
T 4e3z_A 25 DTPVVLVTGG------SRGIGA---AVCRLAARQGWRVGVNYAA 59 (272)
T ss_dssp CSCEEEETTT------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECC------CchHHH---HHHHHHHHCCCEEEEEcCC
Confidence 4578888754 577775 7889999999999877544
No 184
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=23.86 E-value=56 Score=30.53 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=25.3
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHh-CCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAA-RGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~-~G~~V~vi~~~ 127 (580)
+|.++|+.- +||+|. .+++.|++ .|++|.+++..
T Consensus 4 ~k~vlITGa------sggIG~---~~a~~L~~~~g~~V~~~~r~ 38 (276)
T 1wma_A 4 IHVALVTGG------NKGIGL---AIVRDLCRLFSGDVVLTARD 38 (276)
T ss_dssp CCEEEESSC------SSHHHH---HHHHHHHHHSSSEEEEEESS
T ss_pred CCEEEEeCC------CcHHHH---HHHHHHHHhcCCeEEEEeCC
Confidence 466666643 577776 67889999 99998887653
No 185
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.85 E-value=3.1e+02 Score=22.64 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=59.3
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh----cCCEEEecCCC-CCccHHHHHHHHc---CCc
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA----GADFMLVPSRF-EPCGLIQLHAMRY---GTV 471 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~----~aDi~l~ps~~-E~~g~~~lEAma~---G~P 471 (580)
..+++|+.+.. ...+.+.++-.+.+..+.. ..-+...+...+. ..|++++-... +.-|+.+++.+.. .+|
T Consensus 36 ~~~Ilivdd~~-~~~~~l~~~L~~~g~~v~~-~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 36 PFNVLIVDDSV-FTVKQLTQIFTSEGFNIID-TAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp ECEEEEECSCH-HHHHHHHHHHHHTTCEEEE-EESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred ceEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCc
Confidence 35666766543 2344444444444423321 2223333333333 45887776543 3456666655543 566
Q ss_pred eEEcCCCCcc----eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHH
Q 008028 472 PIVASTGGLF----DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVA 520 (580)
Q Consensus 472 vI~s~~gg~~----e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~ 520 (580)
+|+-....-. +.+..|..+++. .|.+.+.+.++|.++++
T Consensus 114 ii~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 114 VIMISALGKEQLVKDCLIKGAKTFIV----------KPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHTTC
T ss_pred EEEEeccCcHHHHHHHHHcCCCEEEe----------CCCCHHHHHHHHHHHhc
Confidence 5544322212 223456778887 89999999999988764
No 186
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=23.81 E-value=79 Score=29.34 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=30.6
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEE
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVA 125 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~ 125 (580)
+.||.+||+.. .+ .-|=..++..|+++|+++|++|..+=
T Consensus 2 ~~mk~i~Itgt-~t---~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 2 NAMKKFFIIGT-DT---EVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TTCEEEEEEES-SS---SSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEeC-CC---CCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 46899999875 12 24666788999999999999998864
No 187
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=23.79 E-value=52 Score=30.18 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=28.3
Q ss_pred CceEEEEeecccCccccccHHHH--hccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDV--LGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~--~~~l~~aL~~~G~~V~vi~~~ 127 (580)
++||++-. +|+.+.+ ..++.+.|.+.|++|.+|-..
T Consensus 7 ~k~I~lgi--------TGs~aa~~k~~~ll~~L~~~g~eV~vv~T~ 44 (201)
T 3lqk_A 7 GKHVGFGL--------TGSHCTYHEVLPQMERLVELGAKVTPFVTH 44 (201)
T ss_dssp TCEEEEEC--------CSCGGGGGGTHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEE--------EChHHHHHHHHHHHHHHhhCCCEEEEEECh
Confidence 45777655 4666665 889999999999999999775
No 188
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.79 E-value=36 Score=32.20 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=29.3
Q ss_pred CceEEEEeecccCccccccHH--HHhccchHHHHhCCCeEEEEEecC
Q 008028 84 GMNLVFVGAEVAPWSKTGGLG--DVLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g--~~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
.|||+.|+.. .||.| ..+..|+.+|+ +|.+|.+|-...
T Consensus 26 ~~~vI~v~s~------kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 26 KPKIITIASI------KGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp CCEEEEECCS------SSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CCeEEEEEeC------CCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 4677766653 57776 47778999999 999999997764
No 189
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=23.72 E-value=60 Score=30.95 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=26.2
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
..|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 23 ~~k~~lVTGa------s~GIG~---aia~~la~~G~~V~~~~r~ 57 (279)
T 3sju_A 23 RPQTAFVTGV------SSGIGL---AVARTLAARGIAVYGCARD 57 (279)
T ss_dssp --CEEEEEST------TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeCC------CCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 3478888864 578886 6889999999998877643
No 190
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=23.71 E-value=48 Score=31.43 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=26.4
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYD 129 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~ 129 (580)
|||++-... ... + .-+..|.++|.+.| +|+|++|..+
T Consensus 1 M~ILlTNDD-Gi~--a----pGi~aL~~~l~~~g-~V~VVAP~~~ 37 (244)
T 2e6c_A 1 MRILVTNDD-GIY--S----PGLWALAEAASQFG-EVFVAAPDTE 37 (244)
T ss_dssp CEEEEECSS-CTT--C----HHHHHHHHHHTTTS-EEEEEEECSS
T ss_pred CeEEEEcCC-CCC--c----HhHHHHHHHHHhCC-CEEEEecCCC
Confidence 788776665 222 2 33557888898888 9999999754
No 191
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=23.68 E-value=62 Score=29.34 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=31.6
Q ss_pred HHHhcCCEEEecCCCCCccHH--HHHHHH------cCCceEEcCCCCcce
Q 008028 441 KIIAGADFMLVPSRFEPCGLI--QLHAMR------YGTVPIVASTGGLFD 482 (580)
Q Consensus 441 ~~~~~aDi~l~ps~~E~~g~~--~lEAma------~G~PvI~s~~gg~~e 482 (580)
.+...||.+|.-+= ++|+- ++|++. .++|++.-+..|+|+
T Consensus 93 ~~~~~sda~IvlPG--G~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~ 140 (191)
T 1t35_A 93 KMSELADGFISMPG--GFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFE 140 (191)
T ss_dssp HHHHHCSEEEECSC--CHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTH
T ss_pred HHHHHCCEEEEeCC--CccHHHHHHHHHHHHHhCCCCCCEEEecCCcccc
Confidence 47788999887553 67876 999995 899999999866655
No 192
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=23.65 E-value=48 Score=31.56 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=27.3
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYD 129 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~ 129 (580)
|||++-... .. ...-+..|.++|.+.| +|.|++|..+
T Consensus 2 M~ILlTNDD-Gi------~apGi~aL~~~l~~~g-~V~VVAP~~~ 38 (251)
T 2phj_A 2 PTFLLVNDD-GY------FSPGINALREALKSLG-RVVVVAPDRN 38 (251)
T ss_dssp CEEEEECSS-CT------TCHHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CEEEEECCC-CC------CCHHHHHHHHHHHhcC-CEEEEecCCC
Confidence 898887765 12 2233567888999998 9999999754
No 193
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=23.56 E-value=1.3e+02 Score=29.72 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=25.2
Q ss_pred HHHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCC
Q 008028 441 KIIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVAST 477 (580)
Q Consensus 441 ~~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~ 477 (580)
.++.++|+++..+-....--....++..|++||++.-
T Consensus 75 ~l~~~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sap 111 (334)
T 2czc_A 75 DLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGG 111 (334)
T ss_dssp HHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTT
T ss_pred HhccCCCEEEECCCccccHHHHHHHHHcCCceEeecc
Confidence 4567999998876433322234578888999997753
No 194
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=23.53 E-value=49 Score=32.65 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=25.6
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
..|||++|.. |.+|. .++..|++.||+|+++..
T Consensus 2 ~~mkI~IiGa--------G~~G~---~~a~~L~~~g~~V~~~~r 34 (335)
T 3ghy_A 2 SLTRICIVGA--------GAVGG---YLGARLALAGEAINVLAR 34 (335)
T ss_dssp CCCCEEEESC--------CHHHH---HHHHHHHHTTCCEEEECC
T ss_pred CCCEEEEECc--------CHHHH---HHHHHHHHCCCEEEEEEC
Confidence 3589999973 66665 467778889999999875
No 195
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.52 E-value=2.7e+02 Score=21.93 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=64.8
Q ss_pred eEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh---------cCCEEEecCCC-CCccHHHHHHHH---
Q 008028 401 VQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA---------GADFMLVPSRF-EPCGLIQLHAMR--- 467 (580)
Q Consensus 401 v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~---------~aDi~l~ps~~-E~~g~~~lEAma--- 467 (580)
.+++|+.+.. ...+.+.++-.+.+........-+...+...+. ..|++++-... +..|..+++.+.
T Consensus 3 ~~ilivdd~~-~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 3 KKIFLVEDNK-ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CEEEEECCCH-HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CeEEEEeCCH-HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 4667776654 344555555554443112222234455544554 47888876554 446777777765
Q ss_pred --cCCceEEcC-CCC---cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 468 --YGTVPIVAS-TGG---LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 468 --~G~PvI~s~-~gg---~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
..+|+|+-. ... ..+.+..|..+++. .|.+.+.+.+.|.++++.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYIT----------KSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE----------CCSSHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheec----------CCCCHHHHHHHHHHHHHH
Confidence 356655443 322 12223456778887 899999999999998874
No 196
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=23.48 E-value=41 Score=32.96 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
++.|+|++... +|++|. .+++.|.+.|+++.|++.
T Consensus 22 ~~~~~vlVtGa-------tG~iG~---~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 22 SNAMNILVTGG-------AGFIGS---NFVHYMLQSYETYKIINF 56 (346)
T ss_dssp --CEEEEEETT-------TSHHHH---HHHHHHHHHCTTEEEEEE
T ss_pred cCCCeEEEECC-------ccHHHH---HHHHHHHhhCCCcEEEEE
Confidence 34567665443 466665 788899999966666554
No 197
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=23.19 E-value=66 Score=29.54 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.2
Q ss_pred cccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 100 TGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 100 ~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+||+|. .+++.|.+.|++|.++...
T Consensus 16 sggiG~---~~a~~l~~~G~~V~~~~r~ 40 (244)
T 1cyd_A 16 GKGIGR---DTVKALHASGAKVVAVTRT 40 (244)
T ss_dssp TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 578876 6889999999998887653
No 198
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=23.18 E-value=52 Score=32.34 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=24.2
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+|++... +|++|. .+++.|.+.|++|.+++..
T Consensus 27 ~~~vlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~r~ 60 (352)
T 1sb8_A 27 PKVWLITGV-------AGFIGS---NLLETLLKLDQKVVGLDNF 60 (352)
T ss_dssp CCEEEEETT-------TSHHHH---HHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEECC-------CcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 356655443 477765 6788899999999988754
No 199
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=22.87 E-value=4.3e+02 Score=23.94 Aligned_cols=108 Identities=8% Similarity=0.055 Sum_probs=62.9
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH--hcCCEEEecCCC-CCccHHHHHHHHc---CCceE
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII--AGADFMLVPSRF-EPCGLIQLHAMRY---GTVPI 473 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~--~~aDi~l~ps~~-E~~g~~~lEAma~---G~PvI 473 (580)
..+++|+-+.. .....+..+-...+..+. ...+...+...+ ...|++++=-.. +.-|+.+++.+.. .+|+|
T Consensus 23 ~~~ILivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 23 EARVLVVDDEA-NIVELLSVSLKFQGFEVY--TATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SCEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CceEEEEECCH-HHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 46777777654 234444444444433332 223444443333 357887765443 4467777776653 45655
Q ss_pred Ec-CCCCcc---eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHH
Q 008028 474 VA-STGGLF---DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVA 520 (580)
Q Consensus 474 ~s-~~gg~~---e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~ 520 (580)
+- ...... +.+..|..+++. .|.+.+++..+|..++.
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~----------Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVT----------KPFSLEEVVARLRVILR 140 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEE----------SSCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEe----------CCCCHHHHHHHHHHHHH
Confidence 43 333222 224457788887 99999999999999886
No 200
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=22.69 E-value=69 Score=32.41 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=29.1
Q ss_pred ceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEe
Q 008028 85 MNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~ 126 (580)
|+|++++. .||.|. .+..++.+|++.|.+|.+|..
T Consensus 2 ~~i~~~~g-------kGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 2 ALILTFLG-------KSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp CEEEEEEC-------SBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cEEEEEeC-------CCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 57888775 488887 567789999999999999987
No 201
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=22.63 E-value=2.5e+02 Score=25.94 Aligned_cols=77 Identities=14% Similarity=0.014 Sum_probs=45.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHH-----HHhcCCEEEecCCCCCccHH
Q 008028 387 DILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHK-----IIAGADFMLVPSRFEPCGLI 461 (580)
Q Consensus 387 ~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~-----~~~~aDi~l~ps~~E~~g~~ 461 (580)
..+++++.+.++..-++.++|-+. ....++.++.-++.++......+.+.+.. .-.++++++ +-+++
T Consensus 93 ~Dil~aL~~a~~~~~kIavVg~~~--~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVV------G~~~~ 164 (225)
T 2pju_A 93 YDVLQFLAKAGKLTSSIGVVTYQE--TIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVV------GAGLI 164 (225)
T ss_dssp HHHHHHHHHTTCTTSCEEEEEESS--CCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE------ESHHH
T ss_pred HHHHHHHHHHHhhCCcEEEEeCch--hhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEE------CCHHH
Confidence 467788887776545777788765 33344555554554565555555544442 234677777 55555
Q ss_pred HHHHHHcCCc
Q 008028 462 QLHAMRYGTV 471 (580)
Q Consensus 462 ~lEAma~G~P 471 (580)
.--|-.+|.|
T Consensus 165 ~~~A~~~Gl~ 174 (225)
T 2pju_A 165 TDLAEEAGMT 174 (225)
T ss_dssp HHHHHHTTSE
T ss_pred HHHHHHcCCc
Confidence 6666666664
No 202
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.62 E-value=1.9e+02 Score=27.63 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=26.3
Q ss_pred cEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCC
Q 008028 372 PLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGK 410 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~ 410 (580)
.+|+|++.-.. -.-..+++.++++++.+|.+-++|-|.
T Consensus 109 rIIlf~ds~~~-~~~~~l~~lak~lkk~gI~v~vIgFG~ 146 (268)
T 4b4t_W 109 RIVAFVCSPIS-DSRDELIRLAKTLKKNNVAVDIINFGE 146 (268)
T ss_dssp EEEEEECSCCS-SCHHHHHHHHHHHHHHTEEEEEEEESS
T ss_pred EEEEEECCCCC-CCHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence 46777765322 245677888888877888888888764
No 203
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=22.54 E-value=3e+02 Score=22.06 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=66.0
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh---cCCEEEecCCC-C-CccHHHHHHHH--cCCce
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA---GADFMLVPSRF-E-PCGLIQLHAMR--YGTVP 472 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~---~aDi~l~ps~~-E-~~g~~~lEAma--~G~Pv 472 (580)
+.+++|+.+.. .....+.++-.+.+..+. ...+...+...+. ..|++++-... + ..|..+++.+. ..+|+
T Consensus 5 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 5 DKKILIVEDSK-FQAKTIANILNKYGYTVE--IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140)
T ss_dssp -CEEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCE
T ss_pred CcEEEEEeCCH-HHHHHHHHHHHHcCCEEE--EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCE
Confidence 45677777654 344555555555443333 2334555544543 46888876654 3 56777666655 36676
Q ss_pred EEcCCCC----cceeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 473 IVASTGG----LFDTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 473 I~s~~gg----~~e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
|+-.... ..+.+..|..+++. .|.+.+.+.++|.++++.
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 82 VFLTAHTEPAVVEKIRSVTAYGYVM----------KSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEEESSSSCCCCGGGGGSCEEEEEE----------TTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcEEEe----------CCCCHHHHHHHHHHHHHH
Confidence 5543222 22333446778887 999999999999999885
No 204
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.52 E-value=2.9e+02 Score=21.90 Aligned_cols=109 Identities=10% Similarity=0.119 Sum_probs=63.2
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHH--hcCCEEEecCCC-CCccHHHHHHHHc---CCceE
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKII--AGADFMLVPSRF-EPCGLIQLHAMRY---GTVPI 473 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~--~~aDi~l~ps~~-E~~g~~~lEAma~---G~PvI 473 (580)
..+++|+.+.. .....+.++-.+....+.... +...+...+ ...|++++-... +.-|..+++.+.. .+|+|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~~~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 7 ALKILIVEDDT-DAREWLSTIISNHFPEVWSAG--DGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp CCCEEEECSCH-HHHHHHHHHHHTTCSCEEEES--SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred ccEEEEEeCCH-HHHHHHHHHHHhcCcEEEEEC--CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 45777777654 234444444444332333322 333333333 357888876543 4567776666654 56665
Q ss_pred EcCCCCcc----eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 474 VASTGGLF----DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 474 ~s~~gg~~----e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
+-....-. +.+..|..+++. .|.+.+.+.++|.++++.
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~----------kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLP----------KPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECC----------SSCCHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEc----------CCCCHHHHHHHHHHHHHH
Confidence 54432222 223456777776 899999999999999884
No 205
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=22.44 E-value=52 Score=31.23 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=26.3
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYD 129 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~ 129 (580)
|||++-... ... + .-+..|.++|.+.| +|+|++|..+
T Consensus 1 M~ILlTNDD-Gi~--a----pGi~aL~~~l~~~g-~V~VVAP~~~ 37 (247)
T 1j9j_A 1 MRILVTNDD-GIQ--S----KGIIVLAELLSEEH-EVFVVAPDKE 37 (247)
T ss_dssp CEEEEECSS-CTT--C----HHHHHHHHHHTTTS-EEEEEEESSC
T ss_pred CeEEEEcCC-CCC--c----HhHHHHHHHHHhCC-CEEEEecCCC
Confidence 788776665 222 2 33457888888888 9999999754
No 206
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=22.37 E-value=44 Score=32.02 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=23.8
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+|+++.. +|++|. .++++|.+.||+|.+++-.
T Consensus 3 ~~vlVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 35 (307)
T 2gas_A 3 NKILILGP-------TGAIGR---HIVWASIKAGNPTYALVRK 35 (307)
T ss_dssp CCEEEEST-------TSTTHH---HHHHHHHHHTCCEEEEECC
T ss_pred cEEEEECC-------CchHHH---HHHHHHHhCCCcEEEEECC
Confidence 56665553 477776 5678888899999887654
No 207
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.29 E-value=84 Score=28.33 Aligned_cols=39 Identities=23% Similarity=0.073 Sum_probs=32.1
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|||++|... | .|-...++..+++.+.+.|++|.++-..
T Consensus 6 mmkilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 6 PVKLAIVFYS--S---TGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEEEEC--C---CChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 4799999863 4 4778888999999999999999988764
No 208
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=22.28 E-value=90 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=31.8
Q ss_pred CCceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 83 QGMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 83 ~~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
+.||.+||+.. .+ --|-..++..|+++|.++|++|..+=|
T Consensus 24 ~~m~~i~Itgt-~t---~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 24 SHMTILVVTGT-GT---GVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp SSCEEEEEEES-ST---TSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCEEEEEeC-CC---CCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 46899999975 12 346777889999999999999988754
No 209
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=22.22 E-value=61 Score=29.83 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=24.8
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 4 k~vlITGa------s~gIG~---~~a~~l~~~G~~V~~~~r~ 36 (236)
T 1ooe_A 4 GKVIVYGG------KGALGS---AILEFFKKNGYTVLNIDLS 36 (236)
T ss_dssp EEEEEETT------TSHHHH---HHHHHHHHTTEEEEEEESS
T ss_pred CEEEEECC------CcHHHH---HHHHHHHHCCCEEEEEecC
Confidence 55666643 578875 7889999999999887654
No 210
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=22.20 E-value=50 Score=31.65 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=24.0
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+|+++.. +|++|. .++++|.+.||+|.+++-.
T Consensus 5 ~~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~l~R~ 37 (308)
T 1qyc_A 5 SRILLIGA-------TGYIGR---HVAKASLDLGHPTFLLVRE 37 (308)
T ss_dssp CCEEEEST-------TSTTHH---HHHHHHHHTTCCEEEECCC
T ss_pred CEEEEEcC-------CcHHHH---HHHHHHHhCCCCEEEEECC
Confidence 56665554 477775 6788899999999887654
No 211
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=22.19 E-value=3e+02 Score=21.83 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=64.1
Q ss_pred CeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--c-CCEEEecCCC-CCccHHHHHHHHcC----Cc
Q 008028 400 NVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--G-ADFMLVPSRF-EPCGLIQLHAMRYG----TV 471 (580)
Q Consensus 400 ~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~-aDi~l~ps~~-E~~g~~~lEAma~G----~P 471 (580)
..+++|+.+.. .....+.++-.+.+..+... -+...+...+. . .|++++-... +..|+.+++.+... +|
T Consensus 7 ~~~ilivdd~~-~~~~~l~~~L~~~g~~v~~~--~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 7 RPLVLVVDDNA-VNREALILYLKSRGIDAVGA--DGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp CCEEEEECSCH-HHHHHHHHHHHHTTCCEEEE--SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCeEEEECCCH-HHHHHHHHHHHHcCceEEEe--CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 45777777654 34445555544444344432 23333333332 2 5777765543 45677788777643 55
Q ss_pred eEEcCCCCcc----eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHHh
Q 008028 472 PIVASTGGLF----DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVAT 521 (580)
Q Consensus 472 vI~s~~gg~~----e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~~ 521 (580)
+|+.....-. +.+..|..+++. .|.+.+.+.++|.+++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~----------KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLL----------KPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHC-
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEe----------CCCCHHHHHHHHHHHhcC
Confidence 5544322222 223457788887 999999999999998874
No 212
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=22.06 E-value=69 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=25.6
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 23 k~vlITGa------s~gIG~---~la~~l~~~G~~V~~~~r~ 55 (251)
T 3orf_A 23 KNILVLGG------SGALGA---EVVKFFKSKSWNTISIDFR 55 (251)
T ss_dssp CEEEEETT------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CEEEEECC------CCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 66777754 577775 7889999999998888754
No 213
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=22.06 E-value=57 Score=29.72 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=20.2
Q ss_pred HHHhccchHHHHhCCCeEEEEEec
Q 008028 104 GDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 104 g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|.+-..+++.|.+.||+|+++...
T Consensus 9 G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 9 ETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CHHHHHHHHHHHhCCCeEEEEECC
Confidence 566668899999999999999864
No 214
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=22.04 E-value=1.1e+02 Score=24.73 Aligned_cols=44 Identities=5% Similarity=-0.090 Sum_probs=32.4
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCCcccc
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYDQYKD 133 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~~~~~ 133 (580)
.+||+.+|.. .-|.+.++..+-+++.++|.++.+.........+
T Consensus 3 mkkIll~Cg~------G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~ 46 (106)
T 1e2b_A 3 KKHIYLFSSA------GMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGE 46 (106)
T ss_dssp CEEEEEECSS------STTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTH
T ss_pred CcEEEEECCC------chhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHh
Confidence 3689999974 2244567778888899999999988877654433
No 215
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=21.96 E-value=50 Score=30.07 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=27.0
Q ss_pred ceEEEEeecccCccccccHH--HHhccchHHHHhCCCeEEEEEecC
Q 008028 85 MNLVFVGAEVAPWSKTGGLG--DVLGGLPPALAARGHRVMSVAPRY 128 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g--~~~~~l~~aL~~~G~~V~vi~~~y 128 (580)
|.|++++. .||.| ..+..|+.+|+++| +|.+|=...
T Consensus 1 kvI~v~s~-------KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 1 MIITVASF-------KGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp CEEEEEES-------STTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred CEEEEEcC-------CCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 34666654 47666 47788999999999 999987653
No 216
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=21.92 E-value=84 Score=29.82 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=25.4
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 23 k~vlVTGa------s~gIG~---~ia~~l~~~G~~V~~~~r~ 55 (277)
T 2rhc_B 23 EVALVTGA------TSGIGL---EIARRLGKEGLRVFVCARG 55 (277)
T ss_dssp CEEEEETC------SSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECC------CCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 67777754 588886 6789999999998887643
No 217
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=21.73 E-value=3.8e+02 Score=23.63 Aligned_cols=66 Identities=14% Similarity=0.015 Sum_probs=40.8
Q ss_pred HHhcCCEEEecCCCCCccHH--HHHHHHcCCceEEcCCCCcce-eEecC-ceeEEEeecccccccCCcccHHHHHHHHHH
Q 008028 442 IIAGADFMLVPSRFEPCGLI--QLHAMRYGTVPIVASTGGLFD-TVKEG-ITGFQMRSFHVECDRVDLADVAAIAKHVNR 517 (580)
Q Consensus 442 ~~~~aDi~l~ps~~E~~g~~--~lEAma~G~PvI~s~~gg~~e-~i~~~-~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ 517 (580)
+...+|.+|.-+- ++|+- +.||+..++||++-+..+..+ ++.+. ...+. -..|++++.+.|.+
T Consensus 104 m~~~sda~IvlpG--g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~-----------~~~~~~e~~~~l~~ 170 (176)
T 2iz6_A 104 NALSSNVLVAVGM--GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVH-----------VAADVAGAIAAVKQ 170 (176)
T ss_dssp CGGGCSEEEEESC--CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEE-----------EESSHHHHHHHHHH
T ss_pred HHHhCCEEEEecC--CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEE-----------EcCCHHHHHHHHHH
Confidence 5556777765442 46664 889999999999987622000 11111 12232 35778888888887
Q ss_pred HHH
Q 008028 518 AVA 520 (580)
Q Consensus 518 ll~ 520 (580)
.++
T Consensus 171 ~~~ 173 (176)
T 2iz6_A 171 LLA 173 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 218
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=21.63 E-value=1.9e+02 Score=28.41 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHHhcCCEEEecCCC--CC---ccHHHHHHHHcCCceEEcCCCCccee
Q 008028 439 AHKIIAGADFMLVPSRF--EP---CGLIQLHAMRYGTVPIVASTGGLFDT 483 (580)
Q Consensus 439 ~~~~~~~aDi~l~ps~~--E~---~g~~~lEAma~G~PvI~s~~gg~~e~ 483 (580)
+..+++.||++++.... +. ++-..++.|.-|..+|-+..|+..+.
T Consensus 191 l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~ 240 (333)
T 1dxy_A 191 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT 240 (333)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred HHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCH
Confidence 34588999998875432 22 44557888888887777777776553
No 219
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=21.62 E-value=2e+02 Score=26.40 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=23.0
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCC--eEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGH--RVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~--~V~vi~~~ 127 (580)
|||+|+... .|..+..+.+++.+.++ +|..|...
T Consensus 2 ~rI~vl~SG---------~g~~~~~~l~~l~~~~~~~~i~~Vvs~ 37 (216)
T 2ywr_A 2 LKIGVLVSG---------RGSNLQAIIDAIESGKVNASIELVISD 37 (216)
T ss_dssp EEEEEEECS---------CCHHHHHHHHHHHTTSSCEEEEEEEES
T ss_pred CEEEEEEeC---------CcHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 589988642 23556788888888888 66555443
No 220
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=21.62 E-value=52 Score=31.60 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=24.6
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+|+++.. +|++|. .++++|.+.||+|.+++-.
T Consensus 4 ~~~ilVtGa-------tG~iG~---~l~~~L~~~g~~V~~~~R~ 37 (313)
T 1qyd_A 4 KSRVLIVGG-------TGYIGK---RIVNASISLGHPTYVLFRP 37 (313)
T ss_dssp CCCEEEEST-------TSTTHH---HHHHHHHHTTCCEEEECCS
T ss_pred CCEEEEEcC-------CcHHHH---HHHHHHHhCCCcEEEEECC
Confidence 356766554 477775 5778888999999887654
No 221
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=21.54 E-value=56 Score=32.36 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=24.5
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhC-CCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAAR-GHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~-G~~V~vi~~~ 127 (580)
.|+|++... +|.+|. .++++|.+. ||+|.++...
T Consensus 24 ~~~vlVtGa-------tG~iG~---~l~~~L~~~~g~~V~~~~r~ 58 (372)
T 3slg_A 24 AKKVLILGV-------NGFIGH---HLSKRILETTDWEVFGMDMQ 58 (372)
T ss_dssp CCEEEEESC-------SSHHHH---HHHHHHHHHSSCEEEEEESC
T ss_pred CCEEEEECC-------CChHHH---HHHHHHHhCCCCEEEEEeCC
Confidence 466665543 466665 678888887 9999998764
No 222
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=21.45 E-value=54 Score=31.11 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=23.9
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhC-CCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAAR-GHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~-G~~V~vi~~~ 127 (580)
|||++... +|++|. .+++.|.+. |++|.+++-.
T Consensus 1 M~ilVtGa-------tG~iG~---~l~~~L~~~~g~~V~~~~R~ 34 (289)
T 3e48_A 1 MNIMLTGA-------TGHLGT---HITNQAIANHIDHFHIGVRN 34 (289)
T ss_dssp CCEEEETT-------TSHHHH---HHHHHHHHTTCTTEEEEESS
T ss_pred CEEEEEcC-------CchHHH---HHHHHHhhCCCCcEEEEECC
Confidence 67766554 477776 566678887 9999998764
No 223
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.37 E-value=1.9e+02 Score=26.05 Aligned_cols=79 Identities=8% Similarity=-0.052 Sum_probs=39.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHH-----HHhcCCEEEecCCCCCccHH
Q 008028 387 DILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHK-----IIAGADFMLVPSRFEPCGLI 461 (580)
Q Consensus 387 ~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~-----~~~~aDi~l~ps~~E~~g~~ 461 (580)
..+++++.+.++..-++.++|-+. ....++.++.-++.++......+.+.+.. .-.++|+++ +-+++
T Consensus 81 ~Dil~al~~a~~~~~kIavvg~~~--~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV------G~~~~ 152 (196)
T 2q5c_A 81 FDTMRAVYNAKRFGNELALIAYKH--SIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVV------SGKTV 152 (196)
T ss_dssp HHHHHHHHHHGGGCSEEEEEEESS--CSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEE------ECHHH
T ss_pred hHHHHHHHHHHhhCCcEEEEeCcc--hhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEE------CCHHH
Confidence 356666666665444677777654 12222333333333344433333333322 234677777 55556
Q ss_pred HHHHHHcCCceE
Q 008028 462 QLHAMRYGTVPI 473 (580)
Q Consensus 462 ~lEAma~G~PvI 473 (580)
.--|-.+|.|.+
T Consensus 153 ~~~A~~~Gl~~v 164 (196)
T 2q5c_A 153 TDEAIKQGLYGE 164 (196)
T ss_dssp HHHHHHTTCEEE
T ss_pred HHHHHHcCCcEE
Confidence 666666776533
No 224
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=21.18 E-value=68 Score=31.65 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=24.6
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHh--CCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAA--RGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~--~G~~V~vi~~~ 127 (580)
+|+|++... +|++|. .+++.|.+ .|++|.++...
T Consensus 10 ~~~vlVTGa-------tG~IG~---~l~~~L~~~~~g~~V~~~~r~ 45 (362)
T 3sxp_A 10 NQTILITGG-------AGFVGS---NLAFHFQENHPKAKVVVLDKF 45 (362)
T ss_dssp TCEEEEETT-------TSHHHH---HHHHHHHHHCTTSEEEEEECC
T ss_pred CCEEEEECC-------CCHHHH---HHHHHHHhhCCCCeEEEEECC
Confidence 466655443 467765 67889999 99999998753
No 225
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=21.17 E-value=67 Score=32.08 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=24.3
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHH-hCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALA-ARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~-~~G~~V~vi~~~ 127 (580)
.|+|++... +|++|. .+++.|. +.||+|.++...
T Consensus 2 ~m~vlVTGa-------tG~iG~---~l~~~L~~~~g~~V~~~~r~ 36 (397)
T 1gy8_A 2 HMRVLVCGG-------AGYIGS---HFVRALLRDTNHSVVIVDSL 36 (397)
T ss_dssp CCEEEEETT-------TSHHHH---HHHHHHHHHCCCEEEEEECC
T ss_pred CCEEEEECC-------CCHHHH---HHHHHHHHhCCCEEEEEecC
Confidence 477655443 466665 6788888 999999988653
No 226
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=21.16 E-value=61 Score=30.72 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=26.1
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
+|+++|+.- +||+|. .+++.|.+.|++|.++...
T Consensus 5 ~k~vlVTGa------s~gIG~---~~a~~l~~~G~~V~~~~r~ 38 (281)
T 3m1a_A 5 AKVWLVTGA------SSGFGR---AIAEAAVAAGDTVIGTARR 38 (281)
T ss_dssp CCEEEETTT------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEECC------CChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 467777754 577776 6889999999999887654
No 227
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=20.88 E-value=2e+02 Score=28.36 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=29.6
Q ss_pred HHHHHhcCCEEEecCCC--CC---ccHHHHHHHHcCCceEEcCCCCcce
Q 008028 439 AHKIIAGADFMLVPSRF--EP---CGLIQLHAMRYGTVPIVASTGGLFD 482 (580)
Q Consensus 439 ~~~~~~~aDi~l~ps~~--E~---~g~~~lEAma~G~PvI~s~~gg~~e 482 (580)
+..+++.||++++.... +. ++-..++.|.-|.-+|-...|+..+
T Consensus 193 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd 241 (333)
T 1j4a_A 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVD 241 (333)
T ss_dssp HHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccC
Confidence 34578999998875432 22 3445778888788777777776554
No 228
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=20.83 E-value=60 Score=29.45 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=20.5
Q ss_pred cccHH--HHhccchHHHHhCCCeEEEE
Q 008028 100 TGGLG--DVLGGLPPALAARGHRVMSV 124 (580)
Q Consensus 100 ~GG~g--~~~~~l~~aL~~~G~~V~vi 124 (580)
.||.| ..+.+|+.+|+++|++|.++
T Consensus 10 kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 10 DTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 46555 47888999999999999885
No 229
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=20.74 E-value=59 Score=30.98 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=25.8
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 22 k~vlVTGa------s~gIG~---aia~~La~~G~~V~~~~r~ 54 (272)
T 2nwq_A 22 STLFITGA------TSGFGE---ACARRFAEAGWSLVLTGRR 54 (272)
T ss_dssp CEEEESST------TTSSHH---HHHHHHHHTTCEEEEEESC
T ss_pred cEEEEeCC------CCHHHH---HHHHHHHHCCCEEEEEECC
Confidence 67777754 588886 6889999999999887653
No 230
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=20.70 E-value=2.6e+02 Score=27.59 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=50.5
Q ss_pred CcEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCE
Q 008028 371 IPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADF 448 (580)
Q Consensus 371 ~~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi 448 (580)
...|+++|-=. -|....+.++... ++++++-+-+... +.. ..+++. +.... . ...+++ ..|+
T Consensus 7 ~~rvgiiG~G~--~g~~~~~~~l~~~--~~~~l~av~d~~~---~~~---~~~~~~-~~~~~---~--~~~ll~~~~~D~ 70 (364)
T 3e82_A 7 TINIALIGYGF--VGKTFHAPLIRSV--PGLNLAFVASRDE---EKV---KRDLPD-VTVIA---S--PEAAVQHPDVDL 70 (364)
T ss_dssp CEEEEEECCSH--HHHHTHHHHHHTS--TTEEEEEEECSCH---HHH---HHHCTT-SEEES---C--HHHHHTCTTCSE
T ss_pred cceEEEECCCH--HHHHHHHHHHhhC--CCeEEEEEEcCCH---HHH---HhhCCC-CcEEC---C--HHHHhcCCCCCE
Confidence 35677777511 1111234444433 5788876655542 112 233432 22222 1 233566 7899
Q ss_pred EEecCCCCCccHHHHHHHHcCCceEEcC
Q 008028 449 MLVPSRFEPCGLIQLHAMRYGTVPIVAS 476 (580)
Q Consensus 449 ~l~ps~~E~~g~~~lEAma~G~PvI~s~ 476 (580)
+++.+......-...+|+..|++|+|-.
T Consensus 71 V~i~tp~~~H~~~~~~al~aGk~Vl~EK 98 (364)
T 3e82_A 71 VVIASPNATHAPLARLALNAGKHVVVDK 98 (364)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred EEEeCChHHHHHHHHHHHHCCCcEEEeC
Confidence 9887765545556788999999998865
No 231
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=20.65 E-value=69 Score=30.77 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=23.8
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEe
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAP 126 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~ 126 (580)
.|||++|.. |.+|. .++..|++.||+|+++..
T Consensus 3 ~m~i~iiG~--------G~~G~---~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 3 AMKIAIAGA--------GAMGS---RLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp -CEEEEECC--------SHHHH---HHHHHHHHTTCEEEEECS
T ss_pred CCeEEEECc--------CHHHH---HHHHHHHhCCCcEEEEEC
Confidence 479998873 55554 567888899999998864
No 232
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=20.61 E-value=6.2e+02 Score=24.96 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=55.5
Q ss_pred HHHHHHcCCCCCCCCcEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCC----hhhHHHHHHHHHHCCCCeeEec
Q 008028 357 EALQSQLGLPVDRNIPLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGK----KPMEQQIEQLEIICPEKARGIT 432 (580)
Q Consensus 357 ~~~~~~~glp~~~~~~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~----~~~~~~i~~l~~~~~~~v~~~~ 432 (580)
-.+++.+|- -+...|.|+|-+ ..=..-++.++.++ .+.+.+++... +.+.+.+++.+.+.+.++....
T Consensus 168 ~TI~E~~G~---l~glkva~vGD~--~nva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~ 239 (340)
T 4ep1_A 168 MTIYEETNT---FKGIKLAYVGDG--NNVCHSLLLASAKV---GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILH 239 (340)
T ss_dssp HHHHHHHSC---CTTCEEEEESCC--CHHHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEES
T ss_pred HHHHHHhCC---CCCCEEEEECCC--chhHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 345666662 245789999986 22356678888877 78999999743 3455566666666665554432
Q ss_pred cCChHHHHHHHhcCCEEEecCC
Q 008028 433 KFSTPLAHKIIAGADFMLVPSR 454 (580)
Q Consensus 433 ~~~~~~~~~~~~~aDi~l~ps~ 454 (580)
+ ..+.+.+||++....+
T Consensus 240 --d---~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 240 --N---PELAVNEADFIYTDVW 256 (340)
T ss_dssp --C---HHHHHTTCSEEEECCC
T ss_pred --C---HHHHhCCCCEEEecCc
Confidence 2 2346899999887654
No 233
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=20.61 E-value=52 Score=33.09 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=28.9
Q ss_pred CceEEEEeecccCccccccHHH--HhccchHHHHhCCCeEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGD--VLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|||+-|... .||.|. ++..|+.+|+++|.+|.+|-..
T Consensus 142 ~~kvIav~s~------KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 142 KSSVVIFTSP------CGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp SCEEEEEECS------STTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CceEEEEECC------CCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4676666543 476665 6778999999999999999765
No 234
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=20.58 E-value=77 Score=30.01 Aligned_cols=33 Identities=24% Similarity=0.657 Sum_probs=25.7
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 5 k~~lVTGa------s~GIG~---aia~~la~~G~~V~~~~r~ 37 (264)
T 3tfo_A 5 KVILITGA------SGGIGE---GIARELGVAGAKILLGARR 37 (264)
T ss_dssp CEEEESST------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CEEEEeCC------ccHHHH---HHHHHHHHCCCEEEEEECC
Confidence 67777754 578875 7889999999998887643
No 235
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=20.54 E-value=57 Score=31.57 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=26.3
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEecCC
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPRYD 129 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~y~ 129 (580)
|||++-... ... +-| +..|.++|.+.| +|+|++|..+
T Consensus 1 M~ILlTNDD-Gi~--ApG----i~aL~~aL~~~g-~V~VVAP~~~ 37 (280)
T 1l5x_A 1 MKILVTNDD-GVH--SPG----LRLLYQFALSLG-DVDVVAPESP 37 (280)
T ss_dssp CEEEEECSS-CTT--CHH----HHHHHHHHGGGS-EEEEEEESSC
T ss_pred CeEEEEcCC-CCC--cHh----HHHHHHHHHhCC-CEEEEecCCC
Confidence 788776665 222 233 457888888888 9999999754
No 236
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=20.50 E-value=89 Score=29.07 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=25.2
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|.++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 19 ~k~vlVTGa------s~gIG~---~~a~~l~~~G~~V~~~~r~ 52 (249)
T 1o5i_A 19 DKGVLVLAA------SRGIGR---AVADVLSQEGAEVTICARN 52 (249)
T ss_dssp TCEEEEESC------SSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CCHHHH---HHHHHHHHCCCEEEEEcCC
Confidence 355666643 588886 6789999999998887643
No 237
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=20.36 E-value=3.1e+02 Score=21.39 Aligned_cols=106 Identities=9% Similarity=0.070 Sum_probs=62.4
Q ss_pred EEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEEEecCCC-CCccHHHHHHHHc-----CCceE
Q 008028 402 QIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFMLVPSRF-EPCGLIQLHAMRY-----GTVPI 473 (580)
Q Consensus 402 ~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~l~ps~~-E~~g~~~lEAma~-----G~PvI 473 (580)
+++|+.+.. .....+..+-.+.+..+. ..-+...+...+. ..|++++=... +.-|..+++.+.. .+|+|
T Consensus 4 ~ILivdd~~-~~~~~l~~~l~~~g~~v~--~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 4 KVLLVDDSA-VLRKIVSFNLKKEGYEVI--EAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp EEEEECSCH-HHHHHHHHHHHHTTCEEE--EESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred eEEEEeCCH-HHHHHHHHHHHHCCcEEE--EeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 566666544 344455554444443333 2234555544444 46887775443 4567778877743 46655
Q ss_pred E-cCCCCcc---eeEecCceeEEEeecccccccCCcccHHHHHHHHHHHHH
Q 008028 474 V-ASTGGLF---DTVKEGITGFQMRSFHVECDRVDLADVAAIAKHVNRAVA 520 (580)
Q Consensus 474 ~-s~~gg~~---e~i~~~~~G~~~~~~~~~~~~v~~~d~~~la~~l~~ll~ 520 (580)
. |..+... +.+..|..+++. .|.+.+.+.++|.++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~----------KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMR----------KPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEE----------SSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhcc----------CCCCHHHHHHHHHHHhc
Confidence 4 3333222 123456788887 99999999999988764
No 238
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=20.35 E-value=40 Score=31.84 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=25.6
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
||.++|+.- +||+|. .+++.|.+.|++|.++...
T Consensus 3 ~k~vlVTGa------sg~IG~---~la~~L~~~G~~V~~~~r~ 36 (267)
T 3rft_A 3 MKRLLVTGA------AGQLGR---VMRERLAPMAEILRLADLS 36 (267)
T ss_dssp EEEEEEEST------TSHHHH---HHHHHTGGGEEEEEEEESS
T ss_pred CCEEEEECC------CCHHHH---HHHHHHHhcCCEEEEEecC
Confidence 566777754 588886 5788899999998877654
No 239
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=20.35 E-value=76 Score=29.98 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=26.2
Q ss_pred ceEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 85 MNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 85 mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
.|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 21 ~k~~lVTGa------s~gIG~---~ia~~l~~~G~~V~~~~r~ 54 (267)
T 1vl8_A 21 GRVALVTGG------SRGLGF---GIAQGLAEAGCSVVVASRN 54 (267)
T ss_dssp TCEEEEETT------TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC------CCHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 467777754 588886 7889999999998887653
No 240
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=20.34 E-value=1.1e+02 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=25.3
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+++|+.- +||+|. .+++.|++.|++|.++...
T Consensus 30 k~vlVTGa------s~gIG~---~ia~~l~~~G~~V~~~~r~ 62 (283)
T 1g0o_A 30 KVALVTGA------GRGIGR---EMAMELGRRGCKVIVNYAN 62 (283)
T ss_dssp CEEEETTT------TSHHHH---HHHHHHHHTTCEEEEEESS
T ss_pred CEEEEeCC------CcHHHH---HHHHHHHHCCCEEEEEeCC
Confidence 66777753 578876 6889999999999887653
No 241
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=20.24 E-value=79 Score=29.11 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=24.2
Q ss_pred eEEEEeecccCccccccHHHHhccchHHHHhCCCeEEEEEec
Q 008028 86 NLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 86 kI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|+++|+.- +||+|. .+++.|.+.|++|.++...
T Consensus 3 k~vlItGa------sggiG~---~~a~~l~~~G~~V~~~~r~ 35 (250)
T 2cfc_A 3 RVAIVTGA------SSGNGL---AIATRFLARGDRVAALDLS 35 (250)
T ss_dssp CEEEEETT------TSHHHH---HHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeCC------CchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 45566643 577776 6789999999998887643
No 242
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=20.21 E-value=54 Score=29.32 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=24.4
Q ss_pred CceEEEEeecccCccccccHHHHhccchHHHHhCCC--eEEEEEec
Q 008028 84 GMNLVFVGAEVAPWSKTGGLGDVLGGLPPALAARGH--RVMSVAPR 127 (580)
Q Consensus 84 ~mkI~~vs~e~~P~~~~GG~g~~~~~l~~aL~~~G~--~V~vi~~~ 127 (580)
+|+|++... +|++|. .+++.|.+.|+ +|.+++..
T Consensus 5 ~~~vlVtGa-------tG~iG~---~l~~~l~~~g~~~~V~~~~r~ 40 (215)
T 2a35_A 5 PKRVLLAGA-------TGLTGE---HLLDRILSEPTLAKVIAPARK 40 (215)
T ss_dssp CCEEEEECT-------TSHHHH---HHHHHHHHCTTCCEEECCBSS
T ss_pred CceEEEECC-------CcHHHH---HHHHHHHhCCCCCeEEEEeCC
Confidence 467766553 477775 67889999999 88777643
No 243
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=20.17 E-value=2.9e+02 Score=27.14 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=50.2
Q ss_pred cEEEEEccCccccCHHHHHHHHhhhcCCCeEEEEEecCChhhHHHHHHHHHHCCCCeeEeccCChHHHHHHHh--cCCEE
Q 008028 372 PLIGFIGRLEEQKGSDILAQAIPKFMGGNVQIVVLGTGKKPMEQQIEQLEIICPEKARGITKFSTPLAHKIIA--GADFM 449 (580)
Q Consensus 372 ~~i~f~Grl~~~Kg~~~ll~a~~~l~~~~v~lii~G~g~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~--~aDi~ 449 (580)
..|+++|-=.- | ...++++... ++++++-+-+... +..+ ...+++ +. .|.. ...+++ .+|++
T Consensus 6 ~~vgiiG~G~~--g-~~~~~~l~~~--~~~~l~av~d~~~---~~~~-~a~~~g--~~---~~~~--~~~ll~~~~~D~V 69 (359)
T 3e18_A 6 YQLVIVGYGGM--G-SYHVTLASAA--DNLEVHGVFDILA---EKRE-AAAQKG--LK---IYES--YEAVLADEKVDAV 69 (359)
T ss_dssp EEEEEECCSHH--H-HHHHHHHHTS--TTEEEEEEECSSH---HHHH-HHHTTT--CC---BCSC--HHHHHHCTTCCEE
T ss_pred CcEEEECcCHH--H-HHHHHHHHhC--CCcEEEEEEcCCH---HHHH-HHHhcC--Cc---eeCC--HHHHhcCCCCCEE
Confidence 45777774111 1 1344455443 5788776655442 1222 233333 21 2322 233566 78999
Q ss_pred EecCCCCCccHHHHHHHHcCCceEEcC
Q 008028 450 LVPSRFEPCGLIQLHAMRYGTVPIVAS 476 (580)
Q Consensus 450 l~ps~~E~~g~~~lEAma~G~PvI~s~ 476 (580)
++.+......-...+|+..|++|+|-.
T Consensus 70 ~i~tp~~~h~~~~~~al~aGkhVl~EK 96 (359)
T 3e18_A 70 LIATPNDSHKELAISALEAGKHVVCEK 96 (359)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeeC
Confidence 987765555556789999999988765
No 244
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=20.17 E-value=1.3e+02 Score=29.28 Aligned_cols=38 Identities=5% Similarity=-0.172 Sum_probs=27.0
Q ss_pred HHhcCCEEEecCCCCCccHHHHHHHHcCCceEEcCCCC
Q 008028 442 IIAGADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGG 479 (580)
Q Consensus 442 ~~~~aDi~l~ps~~E~~g~~~lEAma~G~PvI~s~~gg 479 (580)
++..+|+++..+.....--.+..++..|+++|++...+
T Consensus 55 ll~~~DvViiatp~~~h~~~~~~al~aG~~Vv~ekp~~ 92 (320)
T 1f06_A 55 HADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNH 92 (320)
T ss_dssp TTTTCSEEEECSCTTTHHHHHHHHHTTTSEEECCCCCG
T ss_pred HhcCCCEEEEcCCcHHHHHHHHHHHHCCCEEEECCCCc
Confidence 34789999987754333334667888999999988654
No 245
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=20.14 E-value=39 Score=28.51 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=19.3
Q ss_pred HHHhccchHHHHhCCCeEEEEEec
Q 008028 104 GDVLGGLPPALAARGHRVMSVAPR 127 (580)
Q Consensus 104 g~~~~~l~~aL~~~G~~V~vi~~~ 127 (580)
|.+-..+++.|.+.|++|+++...
T Consensus 16 G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 16 GRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECC
Confidence 444457888999999999999875
No 246
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=20.03 E-value=62 Score=32.34 Aligned_cols=39 Identities=21% Similarity=0.509 Sum_probs=31.6
Q ss_pred CCCceEEEEeecccCccccccHHH--HhccchHHHH--hCCCeEEEEEec
Q 008028 82 QQGMNLVFVGAEVAPWSKTGGLGD--VLGGLPPALA--ARGHRVMSVAPR 127 (580)
Q Consensus 82 ~~~mkI~~vs~e~~P~~~~GG~g~--~~~~l~~aL~--~~G~~V~vi~~~ 127 (580)
...++|++++. .||.|. .+..++.+|+ ..|++|.+|...
T Consensus 15 ~~~~~i~~~~g-------kGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 15 HDSLKWIFVGG-------KGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CTTCSEEEEEC-------STTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CCCcEEEEEeC-------CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 34579999996 366665 6778999999 999999999986
Done!