BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008029
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 214/476 (44%), Gaps = 92/476 (19%)
Query: 61 DLPMNHTRLKKNVTSNFPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWY 120
D+P++ + N P+Q+ + + G A I S VT +P + A W
Sbjct: 10 DMPLDSDVFRVPPGYNAPQQVHITQGD--------LVGRAMIISWVTMDEPGSSAVRYWS 61
Query: 121 GKQSGKYTSKRGGNATVYSQLYPFKGLLNYTSGIIHHVKIDGLDPGTKYYYKCGDSKIPA 180
K K +K G + Y NY+SG IHH I L TKYYY+ G +
Sbjct: 62 EKNGRKRIAK--GKMSTYR-------FFNYSSGFIHHTTIRKLKYNTKYYYEVG---LRN 109
Query: 181 MSAEHVFETLPLPSPTSYPHRIAVIGDLGLTSNSSTTVDH--LIQNDPSLILMVGDLTYA 238
+ F T P + P+ +IGDLG + +S+TT+ H L +L VGDL+YA
Sbjct: 110 TTRRFSFITPP-QTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYA 168
Query: 239 NQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIE--P 296
++Y P+ RWD WGRF E + P + GNHEIE P
Sbjct: 169 DRY---------------PNHD-----NVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAP 208
Query: 297 QVAGIT-FKSYLTRFAVPXXXXXXXXXXXXXXNAGGVHFIMLGAYVDYNSTGAQYAWLKE 355
++ FK + R+ VP H I+L +Y Y QY WLK+
Sbjct: 209 EINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKK 268
Query: 356 DLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYE 415
+L K+ R+ TPWL H P YNSY+ H+ E E MR + EA +Y VD+VF+GHVHAYE
Sbjct: 269 ELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYE 328
Query: 416 RMNRVYNYTL-----------DACGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPE 464
R RV N D PVYIT+GD GN +D +
Sbjct: 329 RSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMI--------------- 373
Query: 465 FGGVCHLNFTSGPAKGKFCWSKQPEWSAYRESSFGHGILEVVNSTYALWTWHRNQD 520
QPE+SA+RE+SFGHG+ ++ N T+A ++W+RNQD
Sbjct: 374 --------------------QPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQD 409
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 214/476 (44%), Gaps = 92/476 (19%)
Query: 61 DLPMNHTRLKKNVTSNFPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWY 120
D+P++ + N P+Q+ + + G A I S VT +P + A W
Sbjct: 4 DMPLDSDVFRVPPGYNAPQQVHITQGD--------LVGRAMIISWVTMDEPGSSAVRYWS 55
Query: 121 GKQSGKYTSKRGGNATVYSQLYPFKGLLNYTSGIIHHVKIDGLDPGTKYYYKCGDSKIPA 180
K K +K G + Y NY+SG IHH I L TKYYY+ G +
Sbjct: 56 EKNGRKRIAK--GKMSTYR-------FFNYSSGFIHHTTIRKLKYNTKYYYEVG---LRN 103
Query: 181 MSAEHVFETLPLPSPTSYPHRIAVIGDLGLTSNSSTTVDH--LIQNDPSLILMVGDLTYA 238
+ F T P + P+ +IGDLG + +S+TT+ H L +L VGDL+YA
Sbjct: 104 TTRRFSFITPP-QTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYA 162
Query: 239 NQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIE--P 296
++Y P + RWD WGRF E + P + GNHEIE P
Sbjct: 163 DRY------------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEFAP 202
Query: 297 QVAGIT-FKSYLTRFAVPXXXXXXXXXXXXXXNAGGVHFIMLGAYVDYNSTGAQYAWLKE 355
++ FK + R+ VP H I+L +Y Y QY WLK+
Sbjct: 203 EINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKK 262
Query: 356 DLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYE 415
+L K+ R+ TPWL H P YNSY+ H+ E E MR + EA +Y VD+VF+GHVHAYE
Sbjct: 263 ELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYE 322
Query: 416 RMNRVYNYTL-----------DACGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPE 464
R RV N D PVYIT+GD GN +D +
Sbjct: 323 RSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQ-------------- 368
Query: 465 FGGVCHLNFTSGPAKGKFCWSKQPEWSAYRESSFGHGILEVVNSTYALWTWHRNQD 520
QPE+SA+RE+SFGHG+ ++ N T+A ++W+RNQD
Sbjct: 369 ---------------------PQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQD 403
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 214/476 (44%), Gaps = 92/476 (19%)
Query: 61 DLPMNHTRLKKNVTSNFPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWY 120
D+P++ + N P+Q+ + + G A I S VT +P + A W
Sbjct: 2 DMPLDSDVFRVPPGYNAPQQVHITQGD--------LVGRAMIISWVTMDEPGSSAVRYWS 53
Query: 121 GKQSGKYTSKRGGNATVYSQLYPFKGLLNYTSGIIHHVKIDGLDPGTKYYYKCGDSKIPA 180
K K +K G + Y NY+SG IHH I L TKYYY+ G +
Sbjct: 54 EKNGRKRIAK--GKMSTYR-------FFNYSSGFIHHTTIRKLKYNTKYYYEVG---LRN 101
Query: 181 MSAEHVFETLPLPSPTSYPHRIAVIGDLGLTSNSSTTVDH--LIQNDPSLILMVGDLTYA 238
+ F T P + P+ +IGDLG + +S+TT+ H L +L VGDL+YA
Sbjct: 102 TTRRFSFITPP-QTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYA 160
Query: 239 NQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIE--P 296
++Y P + RWD WGRF E + P + GNHEIE P
Sbjct: 161 DRY------------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEFAP 200
Query: 297 QVAGIT-FKSYLTRFAVPXXXXXXXXXXXXXXNAGGVHFIMLGAYVDYNSTGAQYAWLKE 355
++ FK + R+ VP H I+L +Y Y QY WLK+
Sbjct: 201 EINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKK 260
Query: 356 DLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYE 415
+L K+ R+ TPWL H P YNSY+ H+ E E MR + EA +Y VD+VF+GHVHAYE
Sbjct: 261 ELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYE 320
Query: 416 RMNRVYNYTL-----------DACGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPE 464
R RV N D PVYIT+GD GN +D +
Sbjct: 321 RSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQ-------------- 366
Query: 465 FGGVCHLNFTSGPAKGKFCWSKQPEWSAYRESSFGHGILEVVNSTYALWTWHRNQD 520
QPE+SA+RE+SFGHG+ ++ N T+A ++W+RNQD
Sbjct: 367 ---------------------PQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQD 401
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 147/441 (33%), Positives = 195/441 (44%), Gaps = 87/441 (19%)
Query: 98 GDAQIGSNVTPLDPSTVASDVWYGKQSGKYTSKRGGNATVYSQLYPFKGLLNYTSGIIHH 157
G I S TP D + A+ V+Y ++ K + G Y NYTS IHH
Sbjct: 37 GRGVIISWTTPYDKAG-ANKVFYWSENSKSQKRAMGTVVTYK-------YYNYTSAFIHH 88
Query: 158 VKIDGLDPGTKYYYKCG--DSKIPAMSAEHVFETLPLPSPTSYPHRIAVIGDLGLTSNSS 215
I L+ TKYYY+ G D+K + F T P P P P+ +IGD+G T +S+
Sbjct: 89 CTIKDLEYDTKYYYRLGFGDAK-----RQFWFVTPPKPGP-DVPYVFGLIGDIGQTHDSN 142
Query: 216 TTVDHLIQNDPS--LILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWG 273
TT+ H QN +L +GDL+Y+N++ RWD WG
Sbjct: 143 TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNN--------------------RWDTWG 182
Query: 274 RFMEPLTSRVPMMVIEGNHEIE--PQVAGIT-FKSYLTRFAVPXXXXXXXXXXXXXXNAG 330
RF E + P + GNHEI+ P + F + R+ P
Sbjct: 183 RFSERSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRA 242
Query: 331 GVHFIMLGAYVDYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECM 390
H I+L +Y + QY W +L K++R+ TPWL H P YNSY +HY E E M
Sbjct: 243 SAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAM 302
Query: 391 RQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTL-----------DACGPVYITVGDGG 439
R E Y VDIVFSGHVH+YER RV N D PVYIT+GDGG
Sbjct: 303 RAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGG 362
Query: 440 NIEQVDVDHADDPGKCPSAGENLPEFGGVCHLNFTSGPAKGKFCWSKQPEWSAYRESSFG 499
N E + + QP +SA+RE+SFG
Sbjct: 363 NSEGLASEMT-----------------------------------QPQPSYSAFREASFG 387
Query: 500 HGILEVVNSTYALWTWHRNQD 520
HGI ++ N T+A ++WHRNQD
Sbjct: 388 HGIFDIKNRTHAHFSWHRNQD 408
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 157 HVKIDGLDPGTKYYY--KCGDSKIPAMSAEHVFETLPLPSPTSYPHRIAVIGDLGLTSNS 214
HV+ DGL+P YYY K G P +TLP P A
Sbjct: 76 HVEADGLEPNKVYYYRFKTGHELSPVGKT----KTLPAPGANVPQMTFAFASCQQYEHGY 131
Query: 215 STTVDHLIQNDPSLILMVGDLTYA---NQYLTTGGKAASCYSC 254
T H+ + L+ +GD Y N+Y++ G + S
Sbjct: 132 YTAYKHMAKEKLDLVFHLGDYIYEYGPNEYVSKTGNVRTHNSA 174
>pdb|4A18|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 94
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 223 QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGR 274
Q +L G TY Q L C +C +PDA +R R+DGWG+
Sbjct: 13 QKTHTLCRRCGKATYHKQKL-------RCAACGYPDAKMR-----RYDGWGQ 52
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 342 DYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY 401
D Q +WLK+ L L A +P W S + H C+ + + LL Y
Sbjct: 158 DLGVARTQLSWLKKQLAAAKEDYV--LVAGHYPIW--SIAEH-GPTRCLVKNLRPLLAAY 212
Query: 402 GVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGNIEQVDVDH 448
GV GH H + Y D G Y+ G GN V H
Sbjct: 213 GVTAYLCGHDHNLQ-------YLQDENGVGYVLSG-AGNFMDPSVRH 251
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 342 DYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY 401
D Q +WLK+ L L A +P W S + H C+ + + LL Y
Sbjct: 179 DLGVARTQLSWLKKQLAAAKEDYV--LVAGHYPIW--SIAEH-GPTRCLVKNLRPLLAAY 233
Query: 402 GVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGNIEQVDVDH 448
GV GH H + Y D G Y+ G GN V H
Sbjct: 234 GVTAYLCGHDHNLQ-------YLQDENGVGYVLSG-AGNFMDPSVRH 272
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 342 DYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY 401
D Q +WLK+ L L A +P W S + H C+ +++ LL Y
Sbjct: 156 DVKLARTQLSWLKKQLAAAREDYV--LVAGHYPVW--SIAEH-GPTHCLVKQLRPLLATY 210
Query: 402 GVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGNIE 442
GV GH H + Y D G Y+ G G ++
Sbjct: 211 GVTAYLCGHDHNLQ-------YLQDENGVGYVLSGAGNFMD 244
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 342 DYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY 401
D Q +WLK+ L L A +P W S + H C+ +++ LL Y
Sbjct: 162 DVKLARTQLSWLKKQLAAAREDYV--LVAGHYPVW--SIAEH-GPTHCLVKQLRPLLATY 216
Query: 402 GVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGNIE 442
GV GH H + Y D G Y+ G G ++
Sbjct: 217 GVTAYLCGHDHNLQ-------YLQDENGVGYVLSGAGNFMD 250
>pdb|3QWQ|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 114
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 32/121 (26%)
Query: 75 SNFPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWYGKQSGKYTSKRGGN 134
S+ P + + ++PTS+ +SW SG S + YG+ GGN
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGRG-----------SYQYYRITYGET--------GGN 44
Query: 135 ATVYSQLYPFKGLLNYTSGIIHHVKIDGLDPGTKY---YYKCGDSKIPAMSAEHVFETLP 191
+ V P G +H I GL PG Y Y D K P H + P
Sbjct: 45 SPVQEFTVP---------GPVHTATISGLKPGVDYTITVYAVTDHK-PHADGPHTYHESP 94
Query: 192 L 192
+
Sbjct: 95 I 95
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
pdb|3NZQ|B Chain B, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
Length = 666
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 184 EHVFETLPLPSPTSYPHRIAVIGDLGLTSNSSTTVDHLIQND 225
+ +F LPL P R AV+ L +T +S +DH I D
Sbjct: 502 DQLFPVLPLEGLDQVPERRAVL--LDITCDSDGAIDHYIDGD 541
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,236,072
Number of Sequences: 62578
Number of extensions: 815961
Number of successful extensions: 1465
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 16
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)