Query 008029
Match_columns 580
No_of_seqs 513 out of 2786
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 18:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 3E-83 6.4E-88 669.8 38.9 421 34-542 6-444 (452)
2 PLN02533 probable purple acid 100.0 3E-78 6.6E-83 651.3 45.8 379 73-538 39-421 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 1.9E-46 4.2E-51 386.9 29.4 276 198-535 3-294 (294)
4 PTZ00422 glideosome-associated 100.0 1.1E-32 2.5E-37 289.2 28.2 260 199-542 26-336 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 9.5E-31 2.1E-35 267.8 24.6 244 200-518 1-275 (277)
6 cd07395 MPP_CSTP1 Homo sapiens 100.0 1.4E-26 3.1E-31 235.4 25.2 205 198-440 3-236 (262)
7 PF09423 PhoD: PhoD-like phosp 99.9 5.7E-25 1.2E-29 240.6 32.6 261 152-418 60-381 (453)
8 cd07402 MPP_GpdQ Enterobacter 99.9 7.7E-23 1.7E-27 204.7 21.2 192 201-441 1-213 (240)
9 COG3540 PhoD Phosphodiesterase 99.9 7.2E-23 1.6E-27 213.9 19.5 312 79-415 39-419 (522)
10 KOG2679 Purple (tartrate-resis 99.9 1.3E-22 2.8E-27 198.1 19.4 204 198-440 42-275 (336)
11 cd07396 MPP_Nbla03831 Homo sap 99.9 7E-23 1.5E-27 209.0 17.2 197 200-440 1-246 (267)
12 PRK11148 cyclic 3',5'-adenosin 99.9 1.5E-20 3.3E-25 192.6 23.8 191 199-440 14-225 (275)
13 cd07401 MPP_TMEM62_N Homo sapi 99.9 1.6E-20 3.5E-25 190.4 19.7 192 202-420 2-216 (256)
14 cd07399 MPP_YvnB Bacillus subt 99.8 8.5E-19 1.8E-23 173.2 15.3 150 200-419 1-166 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 9.5E-18 2.1E-22 173.6 17.9 193 204-418 42-265 (296)
16 PF00149 Metallophos: Calcineu 99.7 2E-17 4.4E-22 152.2 9.1 191 200-414 1-200 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.7 9.5E-16 2.1E-20 155.4 18.6 172 216-417 35-231 (257)
18 cd07393 MPP_DR1119 Deinococcus 99.6 3.8E-15 8.3E-20 149.0 17.4 190 203-438 2-226 (232)
19 cd07383 MPP_Dcr2 Saccharomyces 99.6 1.5E-15 3.2E-20 148.2 13.3 150 199-418 2-180 (199)
20 cd07392 MPP_PAE1087 Pyrobaculu 99.6 1.3E-14 2.9E-19 139.0 16.0 167 202-415 1-174 (188)
21 TIGR03729 acc_ester putative p 99.6 7.9E-15 1.7E-19 147.3 14.3 176 201-415 1-222 (239)
22 TIGR03767 P_acnes_RR metalloph 99.6 7.8E-15 1.7E-19 157.0 14.7 114 321-437 290-416 (496)
23 COG1409 Icc Predicted phosphoh 99.5 1.9E-13 4.1E-18 140.1 15.8 179 200-414 1-193 (301)
24 PF14008 Metallophos_C: Iron/z 99.5 3.6E-14 7.9E-19 112.2 6.9 62 428-531 1-62 (62)
25 cd07400 MPP_YydB Bacillus subt 99.5 2.7E-13 5.8E-18 125.0 13.2 132 202-437 1-144 (144)
26 cd07385 MPP_YkuE_C Bacillus su 99.5 7E-13 1.5E-17 131.1 14.6 187 199-440 1-206 (223)
27 cd07404 MPP_MS158 Microscilla 99.5 2.4E-13 5.1E-18 128.7 10.1 145 202-417 1-152 (166)
28 cd07388 MPP_Tt1561 Thermus the 99.4 7.8E-12 1.7E-16 124.0 18.8 173 199-412 4-189 (224)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.4 1.6E-12 3.4E-17 128.2 12.9 185 201-417 1-204 (223)
30 TIGR03768 RPA4764 metallophosp 99.4 8E-12 1.7E-16 132.8 18.2 92 322-414 292-411 (492)
31 KOG1432 Predicted DNA repair e 99.4 3.2E-11 6.9E-16 122.5 21.5 210 198-440 52-330 (379)
32 PRK11340 phosphodiesterase Yae 99.4 4.6E-12 1E-16 129.7 15.6 164 199-420 49-220 (271)
33 cd00838 MPP_superfamily metall 99.3 3.7E-11 7.9E-16 106.7 11.6 116 203-418 1-119 (131)
34 cd07389 MPP_PhoD Bacillus subt 99.2 2.1E-10 4.6E-15 114.1 14.7 178 201-417 1-207 (228)
35 PF12850 Metallophos_2: Calcin 99.2 1.5E-10 3.2E-15 107.5 10.5 137 200-440 1-139 (156)
36 cd07397 MPP_DevT Myxococcus xa 99.1 2.3E-09 4.9E-14 106.9 17.7 195 200-436 1-232 (238)
37 cd07379 MPP_239FB Homo sapiens 99.1 5.1E-10 1.1E-14 102.3 11.3 117 201-415 1-117 (135)
38 COG1408 Predicted phosphohydro 99.1 1.1E-09 2.4E-14 112.5 14.1 174 198-422 43-232 (284)
39 PRK05340 UDP-2,3-diacylglucosa 99.0 2.9E-09 6.4E-14 107.1 13.3 198 200-440 1-221 (241)
40 cd08166 MPP_Cdc1_like_1 unchar 98.9 5.3E-09 1.1E-13 101.2 10.5 39 369-417 112-150 (195)
41 cd00841 MPP_YfcE Escherichia c 98.9 7.8E-09 1.7E-13 96.5 11.1 57 367-440 76-132 (155)
42 cd07384 MPP_Cdc1_like Saccharo 98.9 1.5E-08 3.3E-13 96.7 12.7 32 369-418 119-150 (171)
43 cd08165 MPP_MPPE1 human MPPE1 98.9 1E-08 2.3E-13 96.3 10.3 52 222-295 35-89 (156)
44 TIGR00040 yfcE phosphoesterase 98.8 3.7E-08 8E-13 92.5 12.9 37 200-236 1-39 (158)
45 cd07394 MPP_Vps29 Homo sapiens 98.8 3.5E-07 7.5E-12 87.9 18.9 40 393-440 97-136 (178)
46 PF14582 Metallophos_3: Metall 98.8 9.1E-08 2E-12 93.0 13.9 194 199-415 5-219 (255)
47 KOG3770 Acid sphingomyelinase 98.8 1.7E-07 3.6E-12 102.4 16.9 179 216-417 199-407 (577)
48 COG2129 Predicted phosphoester 98.8 3.7E-07 7.9E-12 89.0 17.3 191 199-437 3-203 (226)
49 TIGR01854 lipid_A_lpxH UDP-2,3 98.8 2.5E-07 5.4E-12 92.6 16.3 184 203-440 2-219 (231)
50 cd07403 MPP_TTHA0053 Thermus t 98.7 3.4E-08 7.3E-13 89.9 8.7 48 368-416 58-105 (129)
51 COG1768 Predicted phosphohydro 98.7 1.4E-07 3.1E-12 88.0 11.5 64 363-437 156-219 (230)
52 cd00845 MPP_UshA_N_like Escher 98.6 3.4E-07 7.4E-12 92.5 13.0 192 200-439 1-225 (252)
53 cd08164 MPP_Ted1 Saccharomyces 98.6 1.4E-07 3E-12 91.1 8.8 32 369-418 129-160 (193)
54 cd07398 MPP_YbbF-LpxH Escheric 98.6 4.1E-07 8.9E-12 89.5 12.1 197 203-437 1-216 (217)
55 PRK09453 phosphodiesterase; Pr 98.6 1.1E-06 2.4E-11 84.6 13.6 75 200-295 1-76 (182)
56 cd07410 MPP_CpdB_N Escherichia 98.5 2.9E-06 6.2E-11 87.2 16.7 188 200-415 1-231 (277)
57 cd07406 MPP_CG11883_N Drosophi 98.5 1.9E-06 4.2E-11 87.6 14.9 191 200-440 1-225 (257)
58 TIGR00583 mre11 DNA repair pro 98.5 1.6E-06 3.6E-11 93.3 14.4 41 199-239 3-56 (405)
59 COG0420 SbcD DNA repair exonuc 98.4 1.6E-06 3.5E-11 93.5 11.6 74 200-296 1-89 (390)
60 COG0622 Predicted phosphoester 98.4 1.7E-05 3.6E-10 75.7 16.5 39 200-238 2-41 (172)
61 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.3 1.1E-05 2.5E-10 82.1 15.4 191 202-419 1-234 (262)
62 cd07411 MPP_SoxB_N Thermus the 98.3 1.2E-05 2.5E-10 82.2 14.5 177 216-440 40-240 (264)
63 cd07412 MPP_YhcR_N Bacillus su 98.2 2.3E-05 5E-10 81.1 15.3 85 350-441 177-263 (288)
64 cd07408 MPP_SA0022_N Staphyloc 98.2 1.6E-05 3.5E-10 80.8 13.5 181 200-416 1-215 (257)
65 cd07382 MPP_DR1281 Deinococcus 98.2 5.3E-05 1.2E-09 76.8 17.0 191 201-442 1-202 (255)
66 cd07409 MPP_CD73_N CD73 ecto-5 98.1 3.9E-05 8.3E-10 79.1 14.3 157 217-415 40-219 (281)
67 PRK04036 DNA polymerase II sma 98.1 3.3E-05 7.1E-10 86.0 14.1 204 198-440 242-470 (504)
68 cd07407 MPP_YHR202W_N Saccharo 98.1 0.00024 5.2E-09 73.3 19.3 204 199-443 5-253 (282)
69 COG2908 Uncharacterized protei 98.1 4.4E-05 9.6E-10 75.4 13.0 189 204-439 2-216 (237)
70 TIGR00282 metallophosphoestera 98.1 0.00021 4.6E-09 72.8 18.3 193 200-443 1-206 (266)
71 PRK09419 bifunctional 2',3'-cy 98.1 0.00011 2.4E-09 89.8 18.7 184 198-415 659-883 (1163)
72 KOG3662 Cell division control 98.1 3.2E-05 7E-10 82.2 12.0 115 199-345 48-186 (410)
73 TIGR00619 sbcd exonuclease Sbc 98.0 1.5E-05 3.2E-10 80.9 7.4 73 200-295 1-88 (253)
74 cd07386 MPP_DNA_pol_II_small_a 97.9 0.00018 3.9E-09 72.5 14.6 198 203-439 2-220 (243)
75 cd07405 MPP_UshA_N Escherichia 97.9 0.00039 8.4E-09 71.9 15.5 187 200-415 1-222 (285)
76 cd07424 MPP_PrpA_PrpB PrpA and 97.9 1.8E-05 3.9E-10 77.8 5.2 38 201-238 2-41 (207)
77 PHA02546 47 endonuclease subun 97.8 4.5E-05 9.7E-10 80.8 7.9 74 200-295 1-89 (340)
78 PRK10966 exonuclease subunit S 97.8 4.6E-05 9.9E-10 82.6 7.9 73 200-295 1-87 (407)
79 cd07390 MPP_AQ1575 Aquifex aeo 97.8 5.2E-05 1.1E-09 72.0 6.9 63 203-295 2-82 (168)
80 COG0737 UshA 5'-nucleotidase/2 97.7 0.00087 1.9E-08 75.1 15.8 185 198-414 25-247 (517)
81 cd07425 MPP_Shelphs Shewanella 97.7 5.9E-05 1.3E-09 74.3 5.6 23 393-415 158-180 (208)
82 PRK09968 serine/threonine-spec 97.6 0.00014 3.1E-09 72.1 7.6 38 201-238 16-55 (218)
83 TIGR01530 nadN NAD pyrophospha 97.6 0.0013 2.8E-08 74.3 16.0 113 286-415 85-219 (550)
84 PRK09558 ushA bifunctional UDP 97.6 0.00096 2.1E-08 75.3 14.9 185 198-414 33-257 (551)
85 PRK11439 pphA serine/threonine 97.6 0.00011 2.5E-09 72.8 6.2 38 201-238 18-57 (218)
86 cd08162 MPP_PhoA_N Synechococc 97.5 0.0017 3.7E-08 68.0 13.5 39 363-415 206-245 (313)
87 cd07391 MPP_PF1019 Pyrococcus 97.4 0.00027 5.9E-09 67.3 6.0 70 203-295 1-88 (172)
88 cd07380 MPP_CWF19_N Schizosacc 97.3 0.00089 1.9E-08 62.5 8.2 53 368-421 71-129 (150)
89 KOG2863 RNA lariat debranching 97.3 0.0025 5.4E-08 66.0 11.8 183 200-413 1-229 (456)
90 PRK11907 bifunctional 2',3'-cy 97.2 0.016 3.4E-07 67.8 18.5 194 198-414 114-354 (814)
91 PRK09419 bifunctional 2',3'-cy 97.1 0.0077 1.7E-07 73.9 15.8 58 353-415 223-281 (1163)
92 PRK09418 bifunctional 2',3'-cy 97.0 0.019 4.1E-07 67.0 16.7 47 363-415 243-290 (780)
93 PHA02239 putative protein phos 97.0 0.0012 2.7E-08 66.2 6.2 39 200-238 1-42 (235)
94 COG4186 Predicted phosphoester 96.8 0.02 4.4E-07 52.9 12.0 38 368-413 110-147 (186)
95 PRK00166 apaH diadenosine tetr 96.8 0.0017 3.8E-08 66.6 5.2 39 200-238 1-41 (275)
96 TIGR00024 SbcD_rel_arch putati 96.8 0.0036 7.7E-08 62.5 7.2 70 200-295 15-102 (225)
97 PRK09420 cpdB bifunctional 2', 96.5 0.066 1.4E-06 61.6 16.4 58 351-414 205-263 (649)
98 TIGR01390 CycNucDiestase 2',3' 96.5 0.065 1.4E-06 61.5 16.1 46 363-414 194-240 (626)
99 cd07423 MPP_PrpE Bacillus subt 96.5 0.0034 7.3E-08 62.9 4.8 39 200-238 1-50 (234)
100 COG5555 Cytolysin, a secreted 96.4 0.0084 1.8E-07 60.4 6.8 142 276-418 164-338 (392)
101 cd07387 MPP_PolD2_C PolD2 (DNA 96.3 0.05 1.1E-06 55.3 12.4 191 202-417 2-218 (257)
102 PRK13625 bis(5'-nucleosyl)-tet 96.3 0.0073 1.6E-07 61.0 6.3 39 200-238 1-49 (245)
103 COG1311 HYS2 Archaeal DNA poly 96.1 0.099 2.1E-06 56.8 13.6 90 198-298 224-324 (481)
104 PF00041 fn3: Fibronectin type 96.1 0.034 7.4E-07 45.2 8.1 76 77-177 2-77 (85)
105 cd07381 MPP_CapA CapA and rela 95.8 0.099 2.1E-06 52.4 11.8 135 273-417 70-222 (239)
106 cd07413 MPP_PA3087 Pseudomonas 95.8 0.011 2.4E-07 58.8 4.7 36 203-238 2-46 (222)
107 PF13277 YmdB: YmdB-like prote 95.6 0.2 4.3E-06 50.4 12.4 189 203-442 1-200 (253)
108 cd07422 MPP_ApaH Escherichia c 95.5 0.017 3.7E-07 58.8 4.7 36 203-238 2-39 (257)
109 cd00144 MPP_PPP_family phospho 95.5 0.016 3.4E-07 57.2 4.4 35 204-238 2-37 (225)
110 cd07421 MPP_Rhilphs Rhilph pho 95.3 0.027 5.9E-07 58.0 5.6 38 201-238 3-47 (304)
111 COG1692 Calcineurin-like phosp 95.2 0.51 1.1E-05 47.1 13.9 193 200-440 1-202 (266)
112 smart00854 PGA_cap Bacterial c 95.2 0.49 1.1E-05 47.5 14.2 135 273-417 66-220 (239)
113 TIGR00668 apaH bis(5'-nucleosy 95.1 0.026 5.7E-07 57.9 4.9 38 201-238 2-41 (279)
114 COG1407 Predicted ICC-like pho 94.9 0.061 1.3E-06 53.6 6.6 73 200-295 20-110 (235)
115 KOG2310 DNA repair exonuclease 94.2 0.099 2.1E-06 57.2 6.5 41 199-239 13-66 (646)
116 PF09587 PGA_cap: Bacterial ca 93.3 1.1 2.3E-05 45.3 12.1 128 282-417 75-231 (250)
117 cd07416 MPP_PP2B PP2B, metallo 91.9 0.21 4.6E-06 52.2 4.9 22 391-412 222-243 (305)
118 cd07420 MPP_RdgC Drosophila me 91.4 0.29 6.4E-06 51.4 5.3 23 391-413 253-275 (321)
119 smart00156 PP2Ac Protein phosp 91.0 0.31 6.7E-06 50.1 4.9 21 391-411 200-220 (271)
120 KOG0196 Tyrosine kinase, EPH ( 91.0 1.3 2.8E-05 51.1 10.0 37 156-192 498-537 (996)
121 KOG4419 5' nucleotidase [Nucle 90.8 1.3 2.7E-05 49.6 9.5 58 346-414 210-269 (602)
122 cd07415 MPP_PP2A_PP4_PP6 PP2A, 90.1 0.35 7.6E-06 50.0 4.4 23 391-413 214-236 (285)
123 cd07414 MPP_PP1_PPKL PP1, PPKL 89.6 0.39 8.5E-06 49.9 4.3 23 391-413 222-244 (293)
124 PTZ00239 serine/threonine prot 89.2 0.52 1.1E-05 49.2 4.9 23 391-413 215-237 (303)
125 KOG4221 Receptor mediating net 89.0 1.4 3.1E-05 52.8 8.6 91 73-193 614-714 (1381)
126 PTZ00480 serine/threonine-prot 88.2 0.58 1.3E-05 49.1 4.4 23 391-413 231-253 (320)
127 cd07418 MPP_PP7 PP7, metalloph 88.2 0.74 1.6E-05 49.4 5.3 21 391-411 273-293 (377)
128 cd00063 FN3 Fibronectin type 3 88.0 4.4 9.5E-05 32.0 8.8 23 155-177 56-78 (93)
129 PTZ00244 serine/threonine-prot 87.2 0.7 1.5E-05 48.0 4.3 23 391-413 224-246 (294)
130 KOG3325 Membrane coat complex 86.9 4.7 0.0001 37.3 8.8 41 392-440 97-137 (183)
131 cd07419 MPP_Bsu1_C Arabidopsis 83.7 1.7 3.6E-05 45.6 5.2 21 391-411 242-262 (311)
132 cd07417 MPP_PP5_C PP5, C-termi 82.8 2.1 4.5E-05 45.0 5.4 23 391-413 233-255 (316)
133 PF04042 DNA_pol_E_B: DNA poly 82.0 1.1 2.4E-05 43.7 2.9 83 202-297 1-93 (209)
134 smart00060 FN3 Fibronectin typ 80.1 14 0.00029 28.0 8.2 23 155-177 56-78 (83)
135 KOG3947 Phosphoesterases [Gene 78.1 23 0.0005 36.2 10.7 32 200-237 62-94 (305)
136 KOG3513 Neural cell adhesion m 73.0 19 0.00041 43.4 9.9 94 76-193 821-917 (1051)
137 KOG4258 Insulin/growth factor 68.5 20 0.00043 42.0 8.5 123 76-209 487-624 (1025)
138 KOG4221 Receptor mediating net 60.7 92 0.002 38.3 12.1 37 155-191 573-612 (1381)
139 PTZ00235 DNA polymerase epsilo 59.0 55 0.0012 34.0 8.9 80 199-295 27-122 (291)
140 PF07353 Uroplakin_II: Uroplak 41.8 29 0.00062 32.6 3.4 37 157-193 103-141 (184)
141 KOG0374 Serine/threonine speci 40.1 36 0.00078 36.1 4.3 22 391-412 233-254 (331)
142 KOG0372 Serine/threonine speci 35.4 46 0.001 33.6 3.9 35 202-238 45-82 (303)
143 cd02852 Isoamylase_N_term Isoa 30.4 65 0.0014 28.3 3.8 23 153-175 48-70 (119)
144 cd02856 Glycogen_debranching_e 30.0 64 0.0014 27.6 3.6 23 153-175 44-66 (103)
145 cd02853 MTHase_N_term Maltooli 27.7 71 0.0015 26.3 3.3 21 154-175 40-60 (85)
146 cd02860 Pullulanase_N_term Pul 27.4 71 0.0015 27.1 3.4 24 153-176 46-69 (100)
147 PF09294 Interfer-bind: Interf 24.8 74 0.0016 26.9 3.1 20 156-175 67-86 (106)
148 KOG3513 Neural cell adhesion m 24.7 2.8E+02 0.0061 33.9 8.6 92 76-193 616-715 (1051)
149 KOG0371 Serine/threonine prote 23.4 99 0.0021 31.6 3.9 35 202-238 62-99 (319)
150 cd01987 USP_OKCHK USP domain i 23.3 4E+02 0.0086 22.7 7.6 23 391-413 74-96 (124)
151 KOG0375 Serine-threonine phosp 23.3 88 0.0019 33.3 3.6 35 202-238 90-127 (517)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-83 Score=669.78 Aligned_cols=421 Identities=38% Similarity=0.621 Sum_probs=365.1
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcccccCCCCCCCceEEEEeCC-CCcEEEEEEeCCCCCCCCCCCCCCC
Q 008029 34 QRIPTTLQGPFEPVTRRFDPSLRRGSDDLPMNHTRLKKNVTSNFPEQIALAISS-PTSMWVSWVSGDAQIGSNVTPLDPS 112 (580)
Q Consensus 34 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~p~~~~~~~~~~P~qi~la~~~-~~sm~V~W~T~~~~~g~~~~~~~p~ 112 (580)
...+..+.|+.-+..+++++++.-....++...|.+. +.||||||++++ .++|+|+|.|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~peQvhlS~~~~~~~m~VswvT~~~~----------- 69 (452)
T KOG1378|consen 6 WSQSEINPKHTLHDINPLPGTLHLLSESEQLTFPSVV-----NSPEQVHLSFTDNLNEMRVSWVTGDGE----------- 69 (452)
T ss_pred eeeeeccCCCccccccccCcccccccccccccCcccC-----CCCCeEEEeccCCCCcEEEEEeCCCCC-----------
Confidence 3457778899999999999999888888888777655 459999999999 77999999998753
Q ss_pred CCCcEEEEcccCCCcceE-EeeEEEEEeeecccCCccccccccEEEEEeCCCCCCCEEEEEEEeCCCCCccceEEEEcCC
Q 008029 113 TVASDVWYGKQSGKYTSK-RGGNATVYSQLYPFKGLLNYTSGIIHHVKIDGLDPGTKYYYKCGDSKIPAMSAEHVFETLP 191 (580)
Q Consensus 113 ~~~~~V~yg~~~~~~~~~-a~g~~~~y~~~~p~~g~~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p 191 (580)
.++|+||+.++..... ++|.+..+.+.|.. .+|++|++|+|+|++|+|+|+||||||++. .||++|+|+|+|
T Consensus 70 --~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~---~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~--~wS~~f~F~t~p 142 (452)
T KOG1378|consen 70 --ENVVRYGEVKDKLDNSAARGMTEAWTDGYAN---GWRDSGYIHDAVMKNLEPNTRYYYQVGSDL--KWSEIFSFKTPP 142 (452)
T ss_pred --CceEEEeecCCCccccccccceEEEeccccc---ccceeeeEeeeeecCCCCCceEEEEeCCCC--CcccceEeECCC
Confidence 3789999887664433 36666666554433 247899999999999999999999999987 699999999998
Q ss_pred CCCCCCCCeEEEEEcccCCCCChHHHHHHHHHCC-CCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHH
Q 008029 192 LPSPTSYPHRIAVIGDLGLTSNSSTTVDHLIQND-PSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWD 270 (580)
Q Consensus 192 ~~~~~~~~~rfav~gD~g~~~~~~~~l~~i~~~~-pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd 270 (580)
+ + ..+.+++++||||.+.....++....++. +|+|||+||++|++.+.+ .+||
T Consensus 143 -~-~-~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n-----------------------~~wD 196 (452)
T KOG1378|consen 143 -G-Q-DSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSN-----------------------WQWD 196 (452)
T ss_pred -C-c-cCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCc-----------------------cchH
Confidence 2 2 25899999999999987777777776665 999999999999975410 4899
Q ss_pred HHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccC--CCcHH
Q 008029 271 GWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDY--NSTGA 348 (580)
Q Consensus 271 ~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~--~~~~~ 348 (580)
.|++++|++++.+|+|++.||||+...... .|..|..||.||.+++.+..++||||++|++|||+|+|+.++ ....+
T Consensus 197 ~f~r~vEp~As~vPymv~~GNHE~d~~~~~-~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~ 275 (452)
T KOG1378|consen 197 EFGRQVEPIASYVPYMVCSGNHEIDWPPQP-CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTA 275 (452)
T ss_pred HHHhhhhhhhccCceEEecccccccCCCcc-cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccch
Confidence 999999999999999999999999866544 799999999999998888888999999999999999999885 35799
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCC-CcchhH--HHHHHHHHHHHhcCCcEEEEccccCceeEeecccccc
Q 008029 349 QYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSS-HYQEFE--CMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTL 425 (580)
Q Consensus 349 Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~-~~~~~~--~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~ 425 (580)
|++||+++|++++|+++||+||+.|+|||++... ++++.+ .+|..||+||.+|+||++|+||+|+|||++|++|.++
T Consensus 276 QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 276 QYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 9999999999999887999999999999999865 666665 8899999999999999999999999999999999887
Q ss_pred ----------CCCCcEEEEeCCCCccccccCCCCCCCCCCCCCCCCCCcccceeecccccCCCCCCcCCCCCCCcceeee
Q 008029 426 ----------DACGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPEFGGVCHLNFTSGPAKGKFCWSKQPEWSAYRE 495 (580)
Q Consensus 426 ----------~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~p~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~p~~sa~~~ 495 (580)
+++||+||++|+|||+|+++... .+||+|||||+
T Consensus 356 ~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~------------------------------------~~~p~~Sa~R~ 399 (452)
T KOG1378|consen 356 GTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFS------------------------------------SPQPEWSAFRE 399 (452)
T ss_pred eccCCcccccCCCCCEEEEEccCCcccccCccc------------------------------------CCCCccccccc
Confidence 89999999999999999876421 26899999999
Q ss_pred cCccEEEEEEEcCcceEEEEEEccCCCCCCccceEEEEEeCCCCCCC
Q 008029 496 SSFGHGILEVVNSTYALWTWHRNQDNYKEDSRGDHIYIVRQPELCFD 542 (580)
Q Consensus 496 ~~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~v~d~~~i~k~~~~~~~ 542 (580)
.+|||++|+++|.||++|+|+|++|..+ ++.|+|||+|+...|..
T Consensus 400 ~dfG~~~L~v~N~TH~~~~~~~~~d~~g--~~~D~fwl~k~~~~~~~ 444 (452)
T KOG1378|consen 400 GDFGYTRLTAKNGTHAHVHWVRNSDASG--VVIDSFWLIKDYRDMVV 444 (452)
T ss_pred ccCCeEEEEEecCceEEEEEEeccCCCc--eEeeeEEEEcccCcccc
Confidence 9999999999999999999999988744 59999999999776433
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=3e-78 Score=651.29 Aligned_cols=379 Identities=45% Similarity=0.849 Sum_probs=330.5
Q ss_pred CCCCCCceEEEEeCCCCcEEEEEEeCCCCCCCCCCCCCCCCCCcEEEEcccCCCcceEEeeEEEEEeeecccCCcccccc
Q 008029 73 VTSNFPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWYGKQSGKYTSKRGGNATVYSQLYPFKGLLNYTS 152 (580)
Q Consensus 73 ~~~~~P~qi~la~~~~~sm~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~~ 152 (580)
.....|+|||||++++++|+|+|.|.+. ..+.|+||++++.+..++.|++.+|+.. ..|.+
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~~~-------------~~~~V~yG~~~~~l~~~a~g~~~~~~~~------~~~~~ 99 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQDS-------------IPPSVVYGTVSGKYEGSANGTSSSYHYL------LIYRS 99 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECCCC-------------CCCEEEEecCCCCCcceEEEEEEEEecc------ccccC
Confidence 3456899999999999999999999863 3578999999999999999998888631 24678
Q ss_pred ccEEEEEeCCCCCCCEEEEEEEeCCCCCccceEEEEcCCCCCCCCCCeEEEEEcccCCCCChHHHHHHHHHCCCCEEEEc
Q 008029 153 GIIHHVKIDGLDPGTKYYYKCGDSKIPAMSAEHVFETLPLPSPTSYPHRIAVIGDLGLTSNSSTTVDHLIQNDPSLILMV 232 (580)
Q Consensus 153 ~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~~~~~~~rfav~gD~g~~~~~~~~l~~i~~~~pDfvl~~ 232 (580)
+++|+|+|+||+|+|+||||||.. .+|++++|+|+|.. .++||+++||+|.......+++++.+.+|||||++
T Consensus 100 g~iH~v~l~~L~p~T~Y~Yrvg~~---~~s~~~~F~T~p~~----~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~ 172 (427)
T PLN02533 100 GQINDVVIGPLKPNTVYYYKCGGP---SSTQEFSFRTPPSK----FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILP 172 (427)
T ss_pred CeEEEEEeCCCCCCCEEEEEECCC---CCccceEEECCCCC----CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEc
Confidence 999999999999999999999964 36899999998853 37999999999987666678899988999999999
Q ss_pred ccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCc--ccccHHHHHhhc
Q 008029 233 GDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQV--AGITFKSYLTRF 310 (580)
Q Consensus 233 GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~--~~~~f~~y~~~f 310 (580)
||++|++. |+.+|+.|.+.++++.+.+|+|+++||||..... ....|..|..+|
T Consensus 173 GDl~y~~~------------------------~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf 228 (427)
T PLN02533 173 GDLSYANF------------------------YQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARW 228 (427)
T ss_pred Cccccccc------------------------hHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcc
Confidence 99999742 3678999999999999999999999999986432 235678899999
Q ss_pred CCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcch--hH
Q 008029 311 AVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQE--FE 388 (580)
Q Consensus 311 ~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~--~~ 388 (580)
.||.++.++..+.||||++|++|||+||++.++....+|++||+++|++++|+++||+|+++|+|+|++...+..+ ..
T Consensus 229 ~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~ 308 (427)
T PLN02533 229 RMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESV 308 (427)
T ss_pred cCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhH
Confidence 9998877777899999999999999999999888889999999999999988889999999999999876443222 24
Q ss_pred HHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcEEEEeCCCCccccccCCCCCCCCCCCCCCCCCCcccce
Q 008029 389 CMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPEFGGV 468 (580)
Q Consensus 389 ~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~p~~~~~~~~~gg~ 468 (580)
.+|+.|++||++|+||++|+||+|.|||++|++|++++++|++||++|+||+.|++...+
T Consensus 309 ~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~-------------------- 368 (427)
T PLN02533 309 GMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKY-------------------- 368 (427)
T ss_pred HHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCcccccccccc--------------------
Confidence 578899999999999999999999999999999999999999999999999998764211
Q ss_pred eecccccCCCCCCcCCCCCCCcceeeecCccEEEEEEEcCcceEEEEEEccCCCCCCccceEEEEEeCCC
Q 008029 469 CHLNFTSGPAKGKFCWSKQPEWSAYRESSFGHGILEVVNSTYALWTWHRNQDNYKEDSRGDHIYIVRQPE 538 (580)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~v~d~~~i~k~~~ 538 (580)
.+++|+||+||+.+|||++|+|+|+|||+|+|+|++|+.. .|.|+|||.|...
T Consensus 369 ---------------~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~--~~~D~~~i~~~~~ 421 (427)
T PLN02533 369 ---------------IDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQS--VASDSVWLKSLLT 421 (427)
T ss_pred ---------------CCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCc--eeeeEEEEEeccC
Confidence 1367999999999999999999999999999999988744 4899999999843
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=1.9e-46 Score=386.87 Aligned_cols=276 Identities=46% Similarity=0.787 Sum_probs=222.9
Q ss_pred CCeEEEEEcccCCC-CChHHHHHHHHH--CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHH
Q 008029 198 YPHRIAVIGDLGLT-SNSSTTVDHLIQ--NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGR 274 (580)
Q Consensus 198 ~~~rfav~gD~g~~-~~~~~~l~~i~~--~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~ 274 (580)
.++||+++||+|.. .....+++++.+ .+|||||++||++|+++.. .+.+|+.|.+
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~----------------------~~~~~~~~~~ 60 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYN----------------------NGSRWDTFMR 60 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCc----------------------cchhHHHHHH
Confidence 37999999999973 456788888887 6999999999999874320 1257999999
Q ss_pred hhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccC---CCcHHHHH
Q 008029 275 FMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDY---NSTGAQYA 351 (580)
Q Consensus 275 ~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~---~~~~~Q~~ 351 (580)
.++++.+.+|+++++||||............+..++.++........+.||+|++|++|||+||++... ....+|++
T Consensus 61 ~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~ 140 (294)
T cd00839 61 QIEPLASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYD 140 (294)
T ss_pred HHHHHHhcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHH
Confidence 999998999999999999997543322111111233344444444568899999999999999998765 56899999
Q ss_pred HHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcc--hhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccc-----
Q 008029 352 WLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQ--EFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYT----- 424 (580)
Q Consensus 352 WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~--~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~----- 424 (580)
||+++|+++++.+.+|+||++|+|+|+....... .....++.|++||++|+|+++|+||+|.|+|++|+++++
T Consensus 141 WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~ 220 (294)
T cd00839 141 WLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDC 220 (294)
T ss_pred HHHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEecccc
Confidence 9999999987667899999999999987644322 245678999999999999999999999999999998865
Q ss_pred ---cCCCCcEEEEeCCCCccccccCCCCCCCCCCCCCCCCCCcccceeecccccCCCCCCcCCCCCCCcceeeecCccEE
Q 008029 425 ---LDACGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPEFGGVCHLNFTSGPAKGKFCWSKQPEWSAYRESSFGHG 501 (580)
Q Consensus 425 ---~~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~p~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~p~~sa~~~~~~G~~ 501 (580)
.+++|++||++|+||+.+...... ...++|++++...+||+
T Consensus 221 ~~~~~~~g~~yiv~G~~G~~~~~~~~~------------------------------------~~~~~~~~~~~~~~g~~ 264 (294)
T cd00839 221 NPYSNPKGPVHIVIGAGGNDEGLDPFS------------------------------------APPPAWSAFRESDYGFG 264 (294)
T ss_pred ccccCCCccEEEEECCCccccCcCccc------------------------------------CCCCCceEEEeccCCEE
Confidence 368899999999999976542100 02368999999999999
Q ss_pred EEEEEcCcceEEEEEEccCCCCCCccceEEEEEe
Q 008029 502 ILEVVNSTYALWTWHRNQDNYKEDSRGDHIYIVR 535 (580)
Q Consensus 502 ~l~v~n~t~~~~~~~~~~~~~~~~~v~d~~~i~k 535 (580)
+|+|.|+|+|.|+|+++.+| +|.|+|+|+|
T Consensus 265 ~~~~~~~t~l~~~~~~~~~g----~v~D~f~i~k 294 (294)
T cd00839 265 RLTVHNSTHLHFEWIRNDDG----VVIDSFWIIK 294 (294)
T ss_pred EEEEEecCeEEEEEEECCCC----eEEEEEEEeC
Confidence 99999999999999999887 4999999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=1.1e-32 Score=289.17 Aligned_cols=260 Identities=17% Similarity=0.267 Sum_probs=191.3
Q ss_pred CeEEEEEcccCCCCChHHHHHHHH-----HCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHH-H
Q 008029 199 PHRIAVIGDLGLTSNSSTTVDHLI-----QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDG-W 272 (580)
Q Consensus 199 ~~rfav~gD~g~~~~~~~~l~~i~-----~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~-~ 272 (580)
.++|+++||+|.+...+..+++.+ +.++||||.+||+. .++. .+ ..+++|.. |
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv-----~s---------------v~Dp~f~~~F 84 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGV-----DG---------------LNDPKWKHCF 84 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCC-----CC---------------ccchhHHhhH
Confidence 589999999998655555444332 35899999999998 4432 11 12356765 4
Q ss_pred HHhhhhhc--cCCCeEEecCCCCCCCCccccc--HH------------HH------HhhcCCCCCCCCCCCcceEEE---
Q 008029 273 GRFMEPLT--SRVPMMVIEGNHEIEPQVAGIT--FK------------SY------LTRFAVPSEESGSNSNFYYSF--- 327 (580)
Q Consensus 273 ~~~l~~l~--~~vP~~~v~GNHD~~~~~~~~~--f~------------~y------~~~f~~P~~~~~~~~~~yYsf--- 327 (580)
.+...... ..+||++++||||+.++...+. +. .| ..||.||. .||++
T Consensus 85 E~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~ 156 (394)
T PTZ00422 85 ENVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTH 156 (394)
T ss_pred hhhccCcchhhCCCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeee
Confidence 44454443 5799999999999975543321 11 11 25788885 67754
Q ss_pred -Ee-------------CcEEEEEEcCccc-----C-CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchh
Q 008029 328 -NA-------------GGVHFIMLGAYVD-----Y-NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEF 387 (580)
Q Consensus 328 -d~-------------G~v~fI~Ldt~~~-----~-~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~ 387 (580)
.. ..+.||++||+.. + .....|++||+++|+.+ ++.++|+||++|||+|+++.. ...
T Consensus 157 f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~h--g~~ 233 (394)
T PTZ00422 157 FTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSS--KGD 233 (394)
T ss_pred eecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCC--CCC
Confidence 21 2389999999632 1 22578999999999754 356789999999999998643 234
Q ss_pred HHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcEEEEeCCCCccccccCCCCCCCCCCCCCCCCCCcccc
Q 008029 388 ECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPEFGG 467 (580)
Q Consensus 388 ~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~p~~~~~~~~~gg 467 (580)
.+++..|+|||++|+||++|+||+|.+||.. ++|+.||++|+||...+...
T Consensus 234 ~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~--------~~gt~yIvSGaGs~~~~~~~--------------------- 284 (394)
T PTZ00422 234 SYLSYYLLPLLKDAQVDLYISGYDRNMEVLT--------DEGTAHINCGSGGNSGRKSI--------------------- 284 (394)
T ss_pred HHHHHHHHHHHHHcCcCEEEEccccceEEec--------CCCceEEEeCccccccCCCC---------------------
Confidence 5789999999999999999999999999974 46899999999998543211
Q ss_pred eeecccccCCCCCCcCCCCCCCcceeeecCccEEEEEEEcCcceEEEEEEccCCCCCCccceEEEEEeCCCCCCC
Q 008029 468 VCHLNFTSGPAKGKFCWSKQPEWSAYRESSFGHGILEVVNSTYALWTWHRNQDNYKEDSRGDHIYIVRQPELCFD 542 (580)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~v~d~~~i~k~~~~~~~ 542 (580)
..++|+.|.....||..+++ +.+.+..+|+.+.+| ++++++.+.|.+.+-+.
T Consensus 285 ------------------~~~~~s~F~~~~~GF~~~~l-~~~~l~~~fid~~~G----kvL~~~~~~~~~~~~~~ 336 (394)
T PTZ00422 285 ------------------MKNSKSLFYSEDIGFCIHEL-NAEGMVTKFVSGNTG----EVLYTHKQPLKKRKLRF 336 (394)
T ss_pred ------------------CCCCCcceecCCCCEEEEEE-ecCEEEEEEEeCCCC----cEEEEeeecccchhhhh
Confidence 23567889888999999997 889999999976566 48999888777554433
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.97 E-value=9.5e-31 Score=267.81 Aligned_cols=244 Identities=23% Similarity=0.390 Sum_probs=173.7
Q ss_pred eEEEEEcccCCC--CChHHH---HHHHH-HCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHH-HHH
Q 008029 200 HRIAVIGDLGLT--SNSSTT---VDHLI-QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRW-DGW 272 (580)
Q Consensus 200 ~rfav~gD~g~~--~~~~~~---l~~i~-~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~w-d~~ 272 (580)
++|+++||+|.. .....+ +.++. +.+|||||++||++|+++... .++.+| +.|
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~--------------------~~~~~~~~~~ 60 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGS--------------------VDDPRFETTF 60 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCC--------------------CcchHHHHHH
Confidence 489999999986 222222 23333 369999999999999764211 112233 345
Q ss_pred HHhhhhhccCCCeEEecCCCCCCCCcccc-cHHH--HHhhcCCCCCCCCCCCcceEEEEeC------cEEEEEEcCcccC
Q 008029 273 GRFMEPLTSRVPMMVIEGNHEIEPQVAGI-TFKS--YLTRFAVPSEESGSNSNFYYSFNAG------GVHFIMLGAYVDY 343 (580)
Q Consensus 273 ~~~l~~l~~~vP~~~v~GNHD~~~~~~~~-~f~~--y~~~f~~P~~~~~~~~~~yYsfd~G------~v~fI~Ldt~~~~ 343 (580)
.+.++.+..++|+++++||||........ .+.. +..+|.+| ..||+|+++ +++||+|||....
T Consensus 61 ~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~ 132 (277)
T cd07378 61 EDVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLC 132 (277)
T ss_pred HHHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHc
Confidence 55555555689999999999987432111 1111 12233333 478999998 7999999997532
Q ss_pred ---------------CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEE
Q 008029 344 ---------------NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFS 408 (580)
Q Consensus 344 ---------------~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~Vdlvls 408 (580)
....+|++||+++|+++. .+|+||++|+|+++..... .....++.|+++|.+++|+++|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~ 207 (277)
T cd07378 133 GNSDDIASPYGPPNGKLAEEQLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLS 207 (277)
T ss_pred CccccccccccCcchhhHHHHHHHHHHHHHhcC---CCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEe
Confidence 246899999999999864 3799999999999765322 12456889999999999999999
Q ss_pred ccccCceeEeeccccccCCCCcEEEEeCCCCccccccCCCCCCCCCCCCCCCCCCcccceeecccccCCCCCCcCCCCCC
Q 008029 409 GHVHAYERMNRVYNYTLDACGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPEFGGVCHLNFTSGPAKGKFCWSKQP 488 (580)
Q Consensus 409 GH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~~e~~~~~~~~~~~~~p~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~p 488 (580)
||+|.+++..+ ...|+.||++|+||...+..... ...+|
T Consensus 208 GH~H~~~~~~~------~~~~~~~i~~G~~~~~~~~~~~~-----------------------------------~~~~~ 246 (277)
T cd07378 208 GHDHNLQHIKD------DGSGTSFVVSGAGSKARPSVKHI-----------------------------------DKVPQ 246 (277)
T ss_pred CCcccceeeec------CCCCcEEEEeCCCcccCCCCCcc-----------------------------------Ccccc
Confidence 99999998864 24699999999988865432100 01235
Q ss_pred CcceeeecCccEEEEEEEcCcceEEEEEEc
Q 008029 489 EWSAYRESSFGHGILEVVNSTYALWTWHRN 518 (580)
Q Consensus 489 ~~sa~~~~~~G~~~l~v~n~t~~~~~~~~~ 518 (580)
.|++++...+||.+++|. ...+.++|+..
T Consensus 247 ~~~~~~~~~~Gy~~i~v~-~~~l~~~~~~~ 275 (277)
T cd07378 247 FFSGFTSSGGGFAYLELT-KEELTVRFYDA 275 (277)
T ss_pred cccccccCCCCEEEEEEe-cCEEEEEEECC
Confidence 788999999999999995 55889999853
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=1.4e-26 Score=235.35 Aligned_cols=205 Identities=23% Similarity=0.341 Sum_probs=149.2
Q ss_pred CCeEEEEEcccCCCCC-----------------hHHHHHHHHHC--CCCEEEEcccccccccccccCCCCCcccccCCCC
Q 008029 198 YPHRIAVIGDLGLTSN-----------------SSTTVDHLIQN--DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPD 258 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~-----------------~~~~l~~i~~~--~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~ 258 (580)
.+++|++++|+|.+.. ....++.+.+. +||||+++||+++....
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~----------------- 65 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPG----------------- 65 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcc-----------------
Confidence 3799999999998731 12344555555 89999999999965211
Q ss_pred CccccccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEc
Q 008029 259 APIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLG 338 (580)
Q Consensus 259 ~p~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ld 338 (580)
.+..+.+|+.+.+.++.+...+|+++++||||+........+..|...|. ..||+|++|+++||+||
T Consensus 66 ---~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~g----------~~~y~~~~~~~~~i~ld 132 (262)
T cd07395 66 ---DELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESIKDYRDVFG----------DDYFSFWVGGVFFIVLN 132 (262)
T ss_pred ---hhhHHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHHHHHHHHhC----------CcceEEEECCEEEEEec
Confidence 01123457777777777767899999999999864333333444544442 35899999999999999
Q ss_pred CcccC------CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCc----chhHHHHHHHHHHHHhcCCcEEEE
Q 008029 339 AYVDY------NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHY----QEFECMRQEMEALLYQYGVDIVFS 408 (580)
Q Consensus 339 t~~~~------~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~----~~~~~~r~~l~~Ll~ky~Vdlvls 408 (580)
+.... ....+|++||+++|+++.+.+.+++||++|+|++....... ......+++|.++|++++|+++|+
T Consensus 133 s~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~ 212 (262)
T cd07395 133 SQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFS 212 (262)
T ss_pred cccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEE
Confidence 96432 23679999999999997644567899999999985432211 122356789999999999999999
Q ss_pred ccccCceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 409 GHVHAYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 409 GH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
||+|.+++.. -.|+.|++++++|.
T Consensus 213 GH~H~~~~~~--------~~g~~~~~~~~~~~ 236 (262)
T cd07395 213 GHYHRNAGGR--------YGGLEMVVTSAIGA 236 (262)
T ss_pred CccccCCceE--------ECCEEEEEcCceec
Confidence 9999987743 24787888877765
No 7
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.94 E-value=5.7e-25 Score=240.61 Aligned_cols=261 Identities=23% Similarity=0.390 Sum_probs=143.2
Q ss_pred cccEEEEEeCCCCCCCEEEEEEEeCCCCCccceEEEEcCCCCCCCCCCeEEEEEcccCCCCChHHHHHHHHH-CCCCEEE
Q 008029 152 SGIIHHVKIDGLDPGTKYYYKCGDSKIPAMSAEHVFETLPLPSPTSYPHRIAVIGDLGLTSNSSTTVDHLIQ-NDPSLIL 230 (580)
Q Consensus 152 ~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~~~~~~~rfav~gD~g~~~~~~~~l~~i~~-~~pDfvl 230 (580)
..+.++|+|+||+|+|+|+||+........|.+++|+|+|..... ++||++++|.+.......+++++.+ .+|||+|
T Consensus 60 ~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~--~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l 137 (453)
T PF09423_consen 60 RDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPD--PFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVL 137 (453)
T ss_dssp GTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE--TT-------EEEEEE----CCC---HHHHHHTT-S--SEEE
T ss_pred CCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCC--ceEEEEECCCCcccChHHHHHhhhccCCCcEEE
Confidence 468899999999999999999999644578899999999765443 6999999999886566788889988 6999999
Q ss_pred Ecccccccccc--cccCCCCCcccccCCC--CCccccccHHHHHHHH--HhhhhhccCCCeEEecCCCCCCCCccc----
Q 008029 231 MVGDLTYANQY--LTTGGKAASCYSCAFP--DAPIRETYQPRWDGWG--RFMEPLTSRVPMMVIEGNHEIEPQVAG---- 300 (580)
Q Consensus 231 ~~GDl~Y~d~~--~~~GG~~~~c~~~~~~--~~p~~e~y~~~wd~~~--~~l~~l~~~vP~~~v~GNHD~~~~~~~---- 300 (580)
|+||.+|++.. .... ....-.+...| .....+.|+.+|..+. ..++.+.+.+|+++++.+||+.++...
T Consensus 138 ~lGD~IY~d~~~~~~~~-~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~ 216 (453)
T PF09423_consen 138 HLGDQIYEDGGGGYGNL-SRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAE 216 (453)
T ss_dssp E-S-SS----TTSS--T-T---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-S
T ss_pred EeCCeeeccCCcccccc-cccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccc
Confidence 99999999741 0000 00000000000 1223456777776553 456777889999999999999865431
Q ss_pred --------------ccHHHHHhhcCCCCCC-CCCCCcceEEEEeCc-EEEEEEcCcccCC--------------------
Q 008029 301 --------------ITFKSYLTRFAVPSEE-SGSNSNFYYSFNAGG-VHFIMLGAYVDYN-------------------- 344 (580)
Q Consensus 301 --------------~~f~~y~~~f~~P~~~-~~~~~~~yYsfd~G~-v~fI~Ldt~~~~~-------------------- 344 (580)
..+.+|.+..+..... .+.....|++|.+|+ +.|++||++....
T Consensus 217 ~~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~ 296 (453)
T PF09423_consen 217 NHQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRT 296 (453)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--
T ss_pred cccccccchHHHHHHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccC
Confidence 0112333333222111 122456799999999 9999999965322
Q ss_pred -CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCC-----------CCCcchhHHHHHHHHHHHHhcCCc--EEEEcc
Q 008029 345 -STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSY-----------SSHYQEFECMRQEMEALLYQYGVD--IVFSGH 410 (580)
Q Consensus 345 -~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~-----------~~~~~~~~~~r~~l~~Ll~ky~Vd--lvlsGH 410 (580)
.+.+|++||++.|++ +.++|+|+..-.|+.... ...|......|++|.++|.+.++. ++|+|+
T Consensus 297 mLG~~Q~~wL~~~L~~---s~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGD 373 (453)
T PF09423_consen 297 MLGEEQWDWLEDWLAS---SQATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGD 373 (453)
T ss_dssp SS-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-S
T ss_pred cCCHHHHHHHHHHHhc---CCCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecC
Confidence 278999999999998 448999999988875432 223455567799999999998875 889999
Q ss_pred ccCceeEe
Q 008029 411 VHAYERMN 418 (580)
Q Consensus 411 ~H~yeR~~ 418 (580)
+|...-..
T Consensus 374 vH~~~~~~ 381 (453)
T PF09423_consen 374 VHASAASR 381 (453)
T ss_dssp SSSEEEEE
T ss_pred cchheeee
Confidence 99876654
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.91 E-value=7.7e-23 Score=204.65 Aligned_cols=192 Identities=21% Similarity=0.290 Sum_probs=136.3
Q ss_pred EEEEEcccCCCCCh-------------HHHHHHHHHC--CCCEEEEcccccccccccccCCCCCcccccCCCCCcccccc
Q 008029 201 RIAVIGDLGLTSNS-------------STTVDHLIQN--DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETY 265 (580)
Q Consensus 201 rfav~gD~g~~~~~-------------~~~l~~i~~~--~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y 265 (580)
||++++|+|.+... .++++.+.+. +||+||++||+++.. .
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~-------~------------------ 55 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDG-------S------------------ 55 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCC-------C------------------
Confidence 69999999988531 3345555565 899999999999641 1
Q ss_pred HHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccC--
Q 008029 266 QPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDY-- 343 (580)
Q Consensus 266 ~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~-- 343 (580)
...|+.+.+.++.+ .+|++.++||||... .+...|..... .....+|+|+.++++||+||+....
T Consensus 56 ~~~~~~~~~~l~~~--~~p~~~v~GNHD~~~--------~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~ 122 (240)
T cd07402 56 PESYERLRELLAAL--PIPVYLLPGNHDDRA--------AMRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQH 122 (240)
T ss_pred HHHHHHHHHHHhhc--CCCEEEeCCCCCCHH--------HHHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCc
Confidence 13456666777766 799999999999731 22222321110 2345689999999999999986432
Q ss_pred --CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcch-hHHHHHHHHHHHHhc-CCcEEEEccccCceeEee
Q 008029 344 --NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQE-FECMRQEMEALLYQY-GVDIVFSGHVHAYERMNR 419 (580)
Q Consensus 344 --~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~Ll~ky-~VdlvlsGH~H~yeR~~p 419 (580)
....+|++||++.|++.. ..++|+++|+|++......... ....++.+.+++.++ +|+++|+||+|......
T Consensus 123 ~~~~~~~ql~wL~~~L~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~- 198 (240)
T cd07402 123 GGELCAAQLDWLEAALAEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS- 198 (240)
T ss_pred CCEECHHHHHHHHHHHHhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE-
Confidence 236889999999999864 2357888888887653211111 112367899999999 99999999999976553
Q ss_pred ccccccCCCCcEEEEeCCCCcc
Q 008029 420 VYNYTLDACGPVYITVGDGGNI 441 (580)
Q Consensus 420 v~n~~~~~~G~vyIv~G~gG~~ 441 (580)
.+|+.++++|+.|..
T Consensus 199 -------~~g~~~~~~gs~~~~ 213 (240)
T cd07402 199 -------WGGIPLLTAPSTCHQ 213 (240)
T ss_pred -------ECCEEEEEcCcceee
Confidence 368899999987774
No 9
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.2e-23 Score=213.87 Aligned_cols=312 Identities=18% Similarity=0.272 Sum_probs=211.0
Q ss_pred ceEEEEeCC-CCcEEEEEEeCCCCCCCCCCCCCCC-CCCcEEEEcccCCCcceEEeeEEEEEeeecccCCccccccccEE
Q 008029 79 EQIALAISS-PTSMWVSWVSGDAQIGSNVTPLDPS-TVASDVWYGKQSGKYTSKRGGNATVYSQLYPFKGLLNYTSGIIH 156 (580)
Q Consensus 79 ~qi~la~~~-~~sm~V~W~T~~~~~g~~~~~~~p~-~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~~~~~h 156 (580)
=+.-++.++ ...-.|-|..-++. |+.-. .+.-.++|++.++..+.+..|+... -| ...+.+
T Consensus 39 F~~GVaSGDp~~~svviWTRl~P~------p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a----~p-------~~dhtv 101 (522)
T COG3540 39 FTHGVASGDPTATSVVIWTRLDPE------PLNGGRPVPVIWEVSTDENFSNIVRKGTVIA----SP-------ELDHTV 101 (522)
T ss_pred cccccccCCCCCCeEEEEEccCCc------cccCCCCcceEEEecCCccHHHHHhcCCccC----Cc-------ccCceE
Confidence 344566677 55666778876542 22111 2455678888776655555454321 11 135789
Q ss_pred EEEeCCCCCCCEEEEEEEeCCCCCccceEEEEcCCCCCCCCCCeEEEEEcccCCCCChHHHHHHHHHCCCCEEEEccccc
Q 008029 157 HVKIDGLDPGTKYYYKCGDSKIPAMSAEHVFETLPLPSPTSYPHRIAVIGDLGLTSNSSTTVDHLIQNDPSLILMVGDLT 236 (580)
Q Consensus 157 ~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~p~~~~~~~~~rfav~gD~g~~~~~~~~l~~i~~~~pDfvl~~GDl~ 236 (580)
+|.++||+|++.|+||+...+ ..|.+.+|||+|+.+....-++|+..++.|...+...+.++|.+.+|||+||.||.+
T Consensus 102 ~v~~~gL~P~~~yfYRf~~~~--~~spvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyI 179 (522)
T COG3540 102 HVDLRGLSPDQDYFYRFKAGD--ERSPVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYI 179 (522)
T ss_pred EEeccCCCCCceEEEEEeeCC--ccccccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCee
Confidence 999999999999999999876 778999999999987643334444555555555667888999999999999999999
Q ss_pred ccccccccCCCCCccccc-CCCC-----CccccccHHHHHHHH--HhhhhhccCCCeEEecCCCCCCCCccc--------
Q 008029 237 YANQYLTTGGKAASCYSC-AFPD-----APIRETYQPRWDGWG--RFMEPLTSRVPMMVIEGNHEIEPQVAG-------- 300 (580)
Q Consensus 237 Y~d~~~~~GG~~~~c~~~-~~~~-----~p~~e~y~~~wd~~~--~~l~~l~~~vP~~~v~GNHD~~~~~~~-------- 300 (580)
|+++..... .+.+.... ...+ ....+.|+.+|..+. ..++...+..|+++.+.+||..++...
T Consensus 180 Yeyg~~~~~-~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~ 258 (522)
T COG3540 180 YEYGPIPDE-VSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSR 258 (522)
T ss_pred eccCCcccc-cccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCC
Confidence 997532110 00000000 1111 113457888887663 457778899999999999999865321
Q ss_pred -----------ccHHHHHhhcCCCCCCCC--CCCcceEEEEeCc-EEEEEEcCcccC------C----------------
Q 008029 301 -----------ITFKSYLTRFAVPSEESG--SNSNFYYSFNAGG-VHFIMLGAYVDY------N---------------- 344 (580)
Q Consensus 301 -----------~~f~~y~~~f~~P~~~~~--~~~~~yYsfd~G~-v~fI~Ldt~~~~------~---------------- 344 (580)
..+++|.+. ||..... .....|.+|.||+ +.|.+||++.+. +
T Consensus 259 ~~~k~~~~r~a~A~qAyyE~--mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~m 336 (522)
T COG3540 259 YDEKDFVLRAAAARQAYYEH--MPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATM 336 (522)
T ss_pred CChHHHHHHHHHHHHHHHHh--CccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccc
Confidence 112344443 4544322 2357899999997 679999997654 1
Q ss_pred CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCcc----CC---------CCCcchhHHHHHHHHHHHHhcCCc--EEEEc
Q 008029 345 STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYN----SY---------SSHYQEFECMRQEMEALLYQYGVD--IVFSG 409 (580)
Q Consensus 345 ~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~----s~---------~~~~~~~~~~r~~l~~Ll~ky~Vd--lvlsG 409 (580)
.+..|.+||+..|.+ +++.|.|+....|+-- .. ...+.....-|+.|+.++.+.++. ++|.|
T Consensus 337 lG~~QeqWLk~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~Ltg 413 (522)
T COG3540 337 LGEQQEQWLKRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTG 413 (522)
T ss_pred hhhHHHHHHHhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEec
Confidence 278999999999998 6789999998888621 11 011233344588999999999875 89999
Q ss_pred cccCce
Q 008029 410 HVHAYE 415 (580)
Q Consensus 410 H~H~ye 415 (580)
.+|...
T Consensus 414 DvH~~w 419 (522)
T COG3540 414 DVHYSW 419 (522)
T ss_pred hhHHHH
Confidence 999643
No 10
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.3e-22 Score=198.12 Aligned_cols=204 Identities=20% Similarity=0.345 Sum_probs=135.6
Q ss_pred CCeEEEEEcccCCCCC--hHHHHHH---H-HHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHH
Q 008029 198 YPHRIAVIGDLGLTSN--SSTTVDH---L-IQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDG 271 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~--~~~~l~~---i-~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~ 271 (580)
..++|+++||+|.... ...+..+ | .+.+.||||.+||++|.++..+. ++++++.
T Consensus 42 gslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~--------------------~Dp~Fq~ 101 (336)
T KOG2679|consen 42 GSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSE--------------------NDPRFQD 101 (336)
T ss_pred CceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCC--------------------CChhHHh
Confidence 3699999999996532 2222222 2 23589999999999998754221 2233332
Q ss_pred -HHHhhhhhccCCCeEEecCCCCCCCCcccc---cHHHHHhhcCCCCCCCCCCCcceEE---EE--eCcEEEEEEcCccc
Q 008029 272 -WGRFMEPLTSRVPMMVIEGNHEIEPQVAGI---TFKSYLTRFAVPSEESGSNSNFYYS---FN--AGGVHFIMLGAYVD 342 (580)
Q Consensus 272 -~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~---~f~~y~~~f~~P~~~~~~~~~~yYs---fd--~G~v~fI~Ldt~~~ 342 (580)
|.+....-..+.||+.+.||||+.++...+ .+.....||..|.. +|-. .+ .-++.++++|+...
T Consensus 102 sF~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rs-------f~~~ae~ve~f~v~~~~f~~d~~~~ 174 (336)
T KOG2679|consen 102 SFENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRS-------FYVDAEIVEMFFVDTTPFMDDTFTL 174 (336)
T ss_pred hhhhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceecccH-------Hhhcceeeeeeccccccchhhheec
Confidence 333332222356999999999998775442 24555667766642 1111 01 11344445444321
Q ss_pred CC--------------CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEE
Q 008029 343 YN--------------STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFS 408 (580)
Q Consensus 343 ~~--------------~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~Vdlvls 408 (580)
.. ....++.||+..|++ +.++|+||.+|+|+.+.+ +.+...++++.|.|||+.++||++++
T Consensus 175 ~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~n 249 (336)
T KOG2679|consen 175 CTDDVYDWRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYIN 249 (336)
T ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHH---hhcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEe
Confidence 11 146789999999999 568899999999998864 33566789999999999999999999
Q ss_pred ccccCceeEeeccccccCCC-CcEEEEeCCCCc
Q 008029 409 GHVHAYERMNRVYNYTLDAC-GPVYITVGDGGN 440 (580)
Q Consensus 409 GH~H~yeR~~pv~n~~~~~~-G~vyIv~G~gG~ 440 (580)
||+|..|..- +++ ++-|+++|+|..
T Consensus 250 GHDHcLQhis-------~~e~~iqf~tSGagSk 275 (336)
T KOG2679|consen 250 GHDHCLQHIS-------SPESGIQFVTSGAGSK 275 (336)
T ss_pred cchhhhhhcc-------CCCCCeeEEeeCCccc
Confidence 9999998874 434 555666666544
No 11
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=7e-23 Score=209.04 Aligned_cols=197 Identities=21% Similarity=0.319 Sum_probs=136.5
Q ss_pred eEEEEEcccCCCCC--------------hHHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCcccccc
Q 008029 200 HRIAVIGDLGLTSN--------------SSTTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETY 265 (580)
Q Consensus 200 ~rfav~gD~g~~~~--------------~~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y 265 (580)
|||++++|+|.... ..++++++.+.+||+||++||+++.... ..
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~----------------------~~ 58 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNA----------------------RA 58 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCc----------------------hH
Confidence 68999999996542 1234566666789999999999954210 01
Q ss_pred HHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCccc---
Q 008029 266 QPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVD--- 342 (580)
Q Consensus 266 ~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~--- 342 (580)
+..|+.+.+.++.+ ++|+++++||||...... .+.. +... ...+..||+|++++++||+||+...
T Consensus 59 ~~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~~-----~~~~-~~~~----~~~~~~yysf~~~~~~~i~lds~~~~~~ 126 (267)
T cd07396 59 EEALDAVLAILDRL--KGPVHHVLGNHDLYNPSR-----EYLL-LYTL----LGLGAPYYSFSPGGIRFIVLDGYDISAL 126 (267)
T ss_pred HHHHHHHHHHHHhc--CCCEEEecCccccccccH-----hhhh-cccc----cCCCCceEEEecCCcEEEEEeCCccccc
Confidence 24566666666665 689999999999863321 1111 0011 1234579999999999999998531
Q ss_pred -------------------------------CCCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHH
Q 008029 343 -------------------------------YNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMR 391 (580)
Q Consensus 343 -------------------------------~~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r 391 (580)
.....+|++||+++|+++..+. .++||++|+|++...... ......+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~-~~viV~~Hhp~~~~~~~~-~~~~~~~ 204 (267)
T cd07396 127 GRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANG-EKVIIFSHFPLHPESTSP-HGLLWNH 204 (267)
T ss_pred cCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcC-CeEEEEEeccCCCCCCCc-cccccCH
Confidence 1235899999999999875332 458999999987654211 1111125
Q ss_pred HHHHHHHHhc-CCcEEEEccccCceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 392 QEMEALLYQY-GVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 392 ~~l~~Ll~ky-~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
+.+.++|.++ +|+++|+||+|.++... .+|+.|+++|+-..
T Consensus 205 ~~~~~ll~~~~~V~~v~~GH~H~~~~~~--------~~gi~~~~~~a~~~ 246 (267)
T cd07396 205 EEVLSILRAYGCVKACISGHDHEGGYAQ--------RHGIHFLTLEGMVE 246 (267)
T ss_pred HHHHHHHHhCCCEEEEEcCCcCCCCccc--------cCCeeEEEechhhc
Confidence 6889999996 89999999999987542 46899998887554
No 12
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.87 E-value=1.5e-20 Score=192.63 Aligned_cols=191 Identities=20% Similarity=0.289 Sum_probs=122.4
Q ss_pred CeEEEEEcccCCCC---------Ch----HHHHHHHHHC--CCCEEEEcccccccccccccCCCCCcccccCCCCCcccc
Q 008029 199 PHRIAVIGDLGLTS---------NS----STTVDHLIQN--DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRE 263 (580)
Q Consensus 199 ~~rfav~gD~g~~~---------~~----~~~l~~i~~~--~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e 263 (580)
++||++++|+|... +. .++++++.+. +|||||++||++... .
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~-------~---------------- 70 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDH-------S---------------- 70 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCC-------C----------------
Confidence 69999999999742 11 2345555443 699999999999531 1
Q ss_pred ccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccC
Q 008029 264 TYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDY 343 (580)
Q Consensus 264 ~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~ 343 (580)
...++.+.+.++.+ .+|+++++||||... .+..+.....+ ...++.+..++++||+||+....
T Consensus 71 --~~~~~~~~~~l~~l--~~Pv~~v~GNHD~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g 133 (275)
T PRK11148 71 --SEAYQHFAEGIAPL--RKPCVWLPGNHDFQP-----AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFG 133 (275)
T ss_pred --HHHHHHHHHHHhhc--CCcEEEeCCCCCChH-----HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCC
Confidence 12345566666666 689999999999842 12222221111 11233444557999999986421
Q ss_pred ----CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcc-hhHHHHHHHHHHHHhc-CCcEEEEccccCceeE
Q 008029 344 ----NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQ-EFECMRQEMEALLYQY-GVDIVFSGHVHAYERM 417 (580)
Q Consensus 344 ----~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~-~~~~~r~~l~~Ll~ky-~VdlvlsGH~H~yeR~ 417 (580)
..+.+|++||++.|++... .+-+|+++|+|+.... .+.. ......++|.+++++| +|+++|+||+|.....
T Consensus 134 ~~~G~l~~~ql~wL~~~L~~~~~--~~~vv~~hH~P~~~~~-~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~ 210 (275)
T PRK11148 134 VPHGELSEYQLEWLERKLADAPE--RHTLVLLHHHPLPAGC-AWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDL 210 (275)
T ss_pred CcCCEeCHHHHHHHHHHHhhCCC--CCeEEEEcCCCCCCCc-chhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhc
Confidence 2468999999999998642 2324455555654321 1111 0111246899999998 8999999999985443
Q ss_pred eeccccccCCCCcEEEEeCCCCc
Q 008029 418 NRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 418 ~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
..+|+.++++++.+.
T Consensus 211 --------~~~gi~~~~~ps~~~ 225 (275)
T PRK11148 211 --------DWNGRRLLATPSTCV 225 (275)
T ss_pred --------eECCEEEEEcCCCcC
Confidence 236787877766554
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.86 E-value=1.6e-20 Score=190.43 Aligned_cols=192 Identities=19% Similarity=0.270 Sum_probs=127.9
Q ss_pred EEEEcccCCCCCh--------HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHH
Q 008029 202 IAVIGDLGLTSNS--------STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWG 273 (580)
Q Consensus 202 fav~gD~g~~~~~--------~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~ 273 (580)
|++++|+|.+... ...++.+.+.+||+++++||+++... ..+ .-...++.+|+.|.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~--~~~--------------~~~~~~~~~~~~~~ 65 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKT--GNK--------------LPSYQYQEEWQKYY 65 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccc--cCC--------------CcccccHHHHHHHH
Confidence 7899999987542 11345566679999999999995421 110 00123456788888
Q ss_pred Hhhhhhc--cCCCeEEecCCCCCCCCcccccHHHHHhhcC-CCCCCCCCCCcceEE--EEeCcEEEEEEcCccc------
Q 008029 274 RFMEPLT--SRVPMMVIEGNHEIEPQVAGITFKSYLTRFA-VPSEESGSNSNFYYS--FNAGGVHFIMLGAYVD------ 342 (580)
Q Consensus 274 ~~l~~l~--~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~-~P~~~~~~~~~~yYs--fd~G~v~fI~Ldt~~~------ 342 (580)
+.+..+. ...|++.++||||..+.........|..+|. ... ....+|. +..|+++||+||+...
T Consensus 66 ~~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~ 140 (256)
T cd07401 66 NILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYSATGR-----DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRP 140 (256)
T ss_pred HHHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhheecC-----CCccceEEEecCCCEEEEEEcCccCCCCCCC
Confidence 8775543 2689999999999964432222223333331 111 1122333 3459999999999642
Q ss_pred ----CCCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEe
Q 008029 343 ----YNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMN 418 (580)
Q Consensus 343 ----~~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~ 418 (580)
.....+|++||+++|++.. +.+++||++|+|++...... . ...+ .+.++|++++|+++|+||+|.+++..
T Consensus 141 ~~~~g~l~~~ql~wL~~~L~~~~--~~~~~IV~~HhP~~~~~~~~-~--~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~ 214 (256)
T cd07401 141 FNFFGSLDKKLLDRLEKELEKST--NSNYTIWFGHYPTSTIISPS-A--KSSS-KFKDLLKKYNVTAYLCGHLHPLGGLE 214 (256)
T ss_pred CceeccCCHHHHHHHHHHHHhcc--cCCeEEEEEcccchhccCCC-c--chhH-HHHHHHHhcCCcEEEeCCccCCCcce
Confidence 2246999999999999864 34579999999986533211 1 1122 39999999999999999999999966
Q ss_pred ec
Q 008029 419 RV 420 (580)
Q Consensus 419 pv 420 (580)
|+
T Consensus 215 p~ 216 (256)
T cd07401 215 PV 216 (256)
T ss_pred ee
Confidence 65
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.80 E-value=8.5e-19 Score=173.20 Aligned_cols=150 Identities=22% Similarity=0.284 Sum_probs=108.8
Q ss_pred eEEEEEcccCCCCCh---------HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHH
Q 008029 200 HRIAVIGDLGLTSNS---------STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWD 270 (580)
Q Consensus 200 ~rfav~gD~g~~~~~---------~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd 270 (580)
|||++++|+|..... ..+++.+.+.+||+|+++||+++... ...+|+
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~------------------------~~~~~~ 56 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGD------------------------NDAEWE 56 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCC------------------------CHHHHH
Confidence 589999999985431 12333444568999999999996421 024688
Q ss_pred HHHHhhhhhc-cCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHH
Q 008029 271 GWGRFMEPLT-SRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQ 349 (580)
Q Consensus 271 ~~~~~l~~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q 349 (580)
.+.+.++.+. ..+|+++++||||. ++.+|+ ....+|
T Consensus 57 ~~~~~~~~l~~~~~p~~~~~GNHD~---------------------------------------~~~ld~----~~~~~q 93 (214)
T cd07399 57 AADKAFARLDKAGIPYSVLAGNHDL---------------------------------------VLALEF----GPRDEV 93 (214)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcc---------------------------------------hhhCCC----CCCHHH
Confidence 8888888886 67999999999992 223332 235899
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcch-----hHHHHHHHHHHHHhc-CCcEEEEccccCceeEee
Q 008029 350 YAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQE-----FECMRQEMEALLYQY-GVDIVFSGHVHAYERMNR 419 (580)
Q Consensus 350 ~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~-----~~~~r~~l~~Ll~ky-~VdlvlsGH~H~yeR~~p 419 (580)
++||++.|++.. ..++|+++|+|++......... ....++.|++|+++| +|+++|+||+|.+.+...
T Consensus 94 l~WL~~~L~~~~---~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 94 LQWANEVLKKHP---DRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred HHHHHHHHHHCC---CCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 999999999853 2358999999988654321111 123356788999999 799999999999988753
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.77 E-value=9.5e-18 Score=173.63 Aligned_cols=193 Identities=21% Similarity=0.288 Sum_probs=129.3
Q ss_pred EEcccCCCCC---hHHHHHHHHHC--CCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHH--HHHHHHHhh
Q 008029 204 VIGDLGLTSN---SSTTVDHLIQN--DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQP--RWDGWGRFM 276 (580)
Q Consensus 204 v~gD~g~~~~---~~~~l~~i~~~--~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~--~wd~~~~~l 276 (580)
-+|+.+.... ...+++.+.+. +|||||++||+++.+.+... .+ ... .+..+.+.+
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~-----------------~~-~~~~~~~~~~~~~l 103 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQT-----------------PE-TLVLISISNLTSLL 103 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhc-----------------hh-HHHHHHHHHHHHHH
Confidence 4677765433 24566777776 89999999999976532110 00 111 255566677
Q ss_pred hhhccCCCeEEecCCCCCCCCcc-------cccHHHHHhhcC--CCCCCC-CCCCcceEEEE-eCcEEEEEEcCcccC--
Q 008029 277 EPLTSRVPMMVIEGNHEIEPQVA-------GITFKSYLTRFA--VPSEES-GSNSNFYYSFN-AGGVHFIMLGAYVDY-- 343 (580)
Q Consensus 277 ~~l~~~vP~~~v~GNHD~~~~~~-------~~~f~~y~~~f~--~P~~~~-~~~~~~yYsfd-~G~v~fI~Ldt~~~~-- 343 (580)
+.....+|+++++||||...... ...+..+...|. ++.... ....+.||++. .+++++|+|||...+
T Consensus 104 ~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~ 183 (296)
T cd00842 104 KKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKK 183 (296)
T ss_pred HHhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCcccccc
Confidence 77778899999999999975422 122333333332 232111 11245789998 889999999996432
Q ss_pred ---------CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcC--CcEEEEcccc
Q 008029 344 ---------NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYG--VDIVFSGHVH 412 (580)
Q Consensus 344 ---------~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~--VdlvlsGH~H 412 (580)
....+|++||+++|+++++.+ ..++|++|+|+........ ...++.|.+++++|. |.++|+||+|
T Consensus 184 ~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~-~~v~I~~HiPp~~~~~~~~---~~~~~~~~~ii~~y~~~i~~~~~GH~H 259 (296)
T cd00842 184 NFWLLGSNETDPAGQLQWLEDELQEAEQAG-EKVWIIGHIPPGVNSYDTL---ENWSERYLQIINRYSDTIAGQFFGHTH 259 (296)
T ss_pred ChhhhccCCCCHHHHHHHHHHHHHHHHHCC-CeEEEEeccCCCCcccccc---hHHHHHHHHHHHHHHHhhheeeecccc
Confidence 234789999999999976443 3477889999876533211 234678999999997 7889999999
Q ss_pred CceeEe
Q 008029 413 AYERMN 418 (580)
Q Consensus 413 ~yeR~~ 418 (580)
..+...
T Consensus 260 ~d~~~~ 265 (296)
T cd00842 260 RDEFRV 265 (296)
T ss_pred cceEEE
Confidence 977653
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.71 E-value=2e-17 Score=152.24 Aligned_cols=191 Identities=26% Similarity=0.256 Sum_probs=101.6
Q ss_pred eEEEEEcccCCCCChH-----HHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHH-
Q 008029 200 HRIAVIGDLGLTSNSS-----TTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWG- 273 (580)
Q Consensus 200 ~rfav~gD~g~~~~~~-----~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~- 273 (580)
|||+++||+|...... .......+.++|+||++||+++.... ...+....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~------------------------~~~~~~~~~ 56 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNP------------------------SEEWRAQFW 56 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSH------------------------HHHHHHHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccc------------------------cccchhhhc
Confidence 6999999999985533 23334456799999999999975321 01111111
Q ss_pred HhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcC-CCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHH
Q 008029 274 RFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFA-VPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAW 352 (580)
Q Consensus 274 ~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~-~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~W 352 (580)
.........+|+++++||||+...........+..... ..........+...........+..............+..|
T Consensus 57 ~~~~~~~~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (200)
T PF00149_consen 57 FFIRLLNPKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEW 136 (200)
T ss_dssp HHHHHHHTTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHH
T ss_pred cchhhhhccccccccccccccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhc
Confidence 12333456899999999999863221111111111110 00000000000001122222222222222111222333333
Q ss_pred HHHHHHhccCCCCCeEEEEeCCCCccCCCCCcch--hHHHHHHHHHHHHhcCCcEEEEccccCc
Q 008029 353 LKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQE--FECMRQEMEALLYQYGVDIVFSGHVHAY 414 (580)
Q Consensus 353 Le~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~--~~~~r~~l~~Ll~ky~VdlvlsGH~H~y 414 (580)
+...+....+...+++|+++|+|++......... ....++.+..++++++|+++|+||+|.|
T Consensus 137 ~~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 137 WLWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHHHHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 3333333223456789999999999875432110 1235778999999999999999999986
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.69 E-value=9.5e-16 Score=155.36 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=110.6
Q ss_pred HHHHHHHH-CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhhccCCCeEEecCCCCC
Q 008029 216 TTVDHLIQ-NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEI 294 (580)
Q Consensus 216 ~~l~~i~~-~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~ 294 (580)
+....+.+ .+||+|+++||+++..... ..+.|...++.|.+.+.++...+|++.++||||+
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~G~~~------------------~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDi 96 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDGGRDW------------------ADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDI 96 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCeeC------------------cHHHHHHHHHHHHHHhcCCCccceEEEeCCCccc
Confidence 34444444 5899999999998642110 0112222334444555444345899999999998
Q ss_pred CCCccc--ccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCccc-----CCCcHHHHHHHHHHHHhccCCCCCe
Q 008029 295 EPQVAG--ITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVD-----YNSTGAQYAWLKEDLHKLDRTVTPW 367 (580)
Q Consensus 295 ~~~~~~--~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~-----~~~~~~Q~~WLe~~L~~~~r~~~pw 367 (580)
...... .....|...|. ..+|+|++|+++||+||+... .....+|.+||++.|+.... .. .
T Consensus 97 g~~~~~~~~~~~rf~~~Fg----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~-p 164 (257)
T cd08163 97 GFGNGVVLPVRQRFEKYFG----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVK-SK-P 164 (257)
T ss_pred CCCCCCCHHHHHHHHHHhC----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCC-CC-c
Confidence 543221 23456666663 235899999999999999532 22456899999999987542 23 3
Q ss_pred EEEEeCCCCccCCCCCcc---h------------hH-HH-HHHHHHHHHhcCCcEEEEccccCceeE
Q 008029 368 LAAAWHPPWYNSYSSHYQ---E------------FE-CM-RQEMEALLYQYGVDIVFSGHVHAYERM 417 (580)
Q Consensus 368 vIv~~H~P~y~s~~~~~~---~------------~~-~~-r~~l~~Ll~ky~VdlvlsGH~H~yeR~ 417 (580)
+|+++|+|+|.......+ + .+ .+ .+.-..||.+.++.+||+||+|.|=..
T Consensus 165 ~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~ 231 (257)
T cd08163 165 RILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEV 231 (257)
T ss_pred EEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCcccee
Confidence 899999999865321100 0 00 11 234457888889999999999998554
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.65 E-value=3.8e-15 Score=148.97 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=117.4
Q ss_pred EEEcccCCCC-----------ChHHHHHHHHHC------CCCEEEEcccccccccccccCCCCCcccccCCCCCcccccc
Q 008029 203 AVIGDLGLTS-----------NSSTTVDHLIQN------DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETY 265 (580)
Q Consensus 203 av~gD~g~~~-----------~~~~~l~~i~~~------~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y 265 (580)
.+++|+|... ++.+.++++.+. +||+||++||+++.. . +
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~-------~-----------------~ 57 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAM-------K-----------------L 57 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCC-------C-----------------h
Confidence 5789999762 123555555554 999999999998421 0 0
Q ss_pred HHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCccc-C-
Q 008029 266 QPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVD-Y- 343 (580)
Q Consensus 266 ~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~-~- 343 (580)
.......+.++.+ ..|+++|+||||+... ....+...+. .. +-.-....++..+++.|++++.+.. +
T Consensus 58 -~~~~~~l~~l~~l--~~~v~~V~GNHD~~~~----~~~~~~~~l~--~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~ 126 (232)
T cd07393 58 -EEAKLDLAWIDAL--PGTKVLLKGNHDYWWG----SASKLRKALE--ES--RLALLFNNAYIDDDVAICGTRGWDNPGN 126 (232)
T ss_pred -HHHHHHHHHHHhC--CCCeEEEeCCccccCC----CHHHHHHHHH--hc--CeEEeccCcEEECCEEEEEEEeeCCCCC
Confidence 1122223344443 3578999999998421 1222222221 00 0000012445668899998764221 0
Q ss_pred ---------------CCcHHHHHHHHHHHHhccCCC-CCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEE
Q 008029 344 ---------------NSTGAQYAWLKEDLHKLDRTV-TPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVF 407 (580)
Q Consensus 344 ---------------~~~~~Q~~WLe~~L~~~~r~~-~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~Vdlvl 407 (580)
....+|++||++.|+++.... ..++|++.|+|++..... ...+..++++++++++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~--------~~~~~~~~~~~~v~~vl 198 (232)
T cd07393 127 PWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD--------DSPISKLIEEYGVDICV 198 (232)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC--------HHHHHHHHHHcCCCEEE
Confidence 013569999999999864322 246899999998765321 23678889999999999
Q ss_pred EccccCceeEeeccccccCCCCcEEEEeCCC
Q 008029 408 SGHVHAYERMNRVYNYTLDACGPVYITVGDG 438 (580)
Q Consensus 408 sGH~H~yeR~~pv~n~~~~~~G~vyIv~G~g 438 (580)
+||+|.+++..|+.. ..+|+.|+++.++
T Consensus 199 ~GH~H~~~~~~~~~~---~~~gi~~~~~~~~ 226 (232)
T cd07393 199 YGHLHGVGRDRAING---ERGGIRYQLVSAD 226 (232)
T ss_pred ECCCCCCcccccccc---eECCEEEEEEcch
Confidence 999999988776532 2457777766553
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.64 E-value=1.5e-15 Score=148.23 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=96.3
Q ss_pred CeEEEEEcccCCCCCh------------HHHHHH-HHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCcccccc
Q 008029 199 PHRIAVIGDLGLTSNS------------STTVDH-LIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETY 265 (580)
Q Consensus 199 ~~rfav~gD~g~~~~~------------~~~l~~-i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y 265 (580)
.+||++++|+|..... .+.+.+ +.+.+||+||++||+++.... ...
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~--------------------~~~- 60 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENT--------------------NDN- 60 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCC--------------------chH-
Confidence 4899999999986532 122333 334689999999999975311 000
Q ss_pred HHHHHHHHHhhhhhc-cCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCC
Q 008029 266 QPRWDGWGRFMEPLT-SRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYN 344 (580)
Q Consensus 266 ~~~wd~~~~~l~~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~ 344 (580)
.+..|.+.++.+. .++|+++++||||. ...
T Consensus 61 --~~~~~~~~~~~l~~~~~p~~~~~GNHD~-----------------------------------------------~g~ 91 (199)
T cd07383 61 --STSALDKAVSPMIDRKIPWAATFGNHDG-----------------------------------------------YDW 91 (199)
T ss_pred --HHHHHHHHHHHHHHcCCCEEEECccCCC-----------------------------------------------CCC
Confidence 1233344444443 37999999999991 112
Q ss_pred CcHHHHHHHHHHHHhcc--CCCCCeEEEEeCCCCccCCCCC---------cch---hHHHHHHH-HHHHHhcCCcEEEEc
Q 008029 345 STGAQYAWLKEDLHKLD--RTVTPWLAAAWHPPWYNSYSSH---------YQE---FECMRQEM-EALLYQYGVDIVFSG 409 (580)
Q Consensus 345 ~~~~Q~~WLe~~L~~~~--r~~~pwvIv~~H~P~y~s~~~~---------~~~---~~~~r~~l-~~Ll~ky~VdlvlsG 409 (580)
....|++||+++|++.. +....+.++++|+|+......+ ..+ .......+ ..+.+..+|+++|+|
T Consensus 92 l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~G 171 (199)
T cd07383 92 IRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCG 171 (199)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeC
Confidence 35799999999999863 2234578999999976532110 001 00112334 444566789999999
Q ss_pred cccCceeEe
Q 008029 410 HVHAYERMN 418 (580)
Q Consensus 410 H~H~yeR~~ 418 (580)
|+|.++...
T Consensus 172 H~H~~~~~~ 180 (199)
T cd07383 172 HDHGNDFCG 180 (199)
T ss_pred CCCCcceec
Confidence 999987654
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.61 E-value=1.3e-14 Score=139.04 Aligned_cols=167 Identities=16% Similarity=0.229 Sum_probs=102.5
Q ss_pred EEEEcccCCCCChHHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhhcc
Q 008029 202 IAVIGDLGLTSNSSTTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTS 281 (580)
Q Consensus 202 fav~gD~g~~~~~~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l~~ 281 (580)
|+++||+|........ ..+.+.++|+||++||+++.. . .+.| ..+ +.++.+
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~-------~--------------~~~~----~~~-~~l~~~-- 51 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFG-------G--------------KEAA----VEI-NLLLAI-- 51 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcC-------C--------------HHHH----HHH-HHHHhc--
Confidence 5789999987543322 345567899999999999531 1 0111 112 344333
Q ss_pred CCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCccc------CCCcHHHHHHHHH
Q 008029 282 RVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVD------YNSTGAQYAWLKE 355 (580)
Q Consensus 282 ~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~------~~~~~~Q~~WLe~ 355 (580)
++|+++++||||... ...+ + ..... ...+ ..+.+++++|+++++... .....+|++|+ +
T Consensus 52 ~~p~~~v~GNHD~~~------~~~~---~--~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~ 116 (188)
T cd07392 52 GVPVLAVPGNCDTPE------ILGL---L--TSAGL-NLHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-G 116 (188)
T ss_pred CCCEEEEcCCCCCHH------HHHh---h--hcCcE-ecCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-h
Confidence 789999999999631 1111 1 00000 0011 345678899999987431 13467899998 4
Q ss_pred HHHhccCCCCCeEEEEeCCCCccCCCC-CcchhHHHHHHHHHHHHhcCCcEEEEccccCce
Q 008029 356 DLHKLDRTVTPWLAAAWHPPWYNSYSS-HYQEFECMRQEMEALLYQYGVDIVFSGHVHAYE 415 (580)
Q Consensus 356 ~L~~~~r~~~pwvIv~~H~P~y~s~~~-~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~ye 415 (580)
.|+.. .....|+++|+|++..... .......-.+.+.+++++++++++|+||+|.-.
T Consensus 117 ~l~~~---~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 117 RLNNL---LAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred hhhcc---CCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 44432 2345888999998763111 111101124678899999999999999999854
No 21
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.60 E-value=7.9e-15 Score=147.30 Aligned_cols=176 Identities=20% Similarity=0.248 Sum_probs=108.5
Q ss_pred EEEEEcccCCCCCh-------HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHH
Q 008029 201 RIAVIGDLGLTSNS-------STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWG 273 (580)
Q Consensus 201 rfav~gD~g~~~~~-------~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~ 273 (580)
||++++|+|..... ...++.+.+.++|+|+++||++... .+...+.
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~---------------------------~~~~~~~ 53 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDF---------------------------QRSLPFI 53 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccch---------------------------hhHHHHH
Confidence 58999999975322 2345556677999999999999421 0112233
Q ss_pred HhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCC---------
Q 008029 274 RFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYN--------- 344 (580)
Q Consensus 274 ~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~--------- 344 (580)
+.+.++ ..+|++.++||||+.... .+..+...+. + ....+.++.+..++++|++++.+.++.
T Consensus 54 ~~l~~~-~~~pv~~v~GNHD~~~~~---~~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~ 124 (239)
T TIGR03729 54 EKLQEL-KGIKVTFNAGNHDMLKDL---TYEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKE 124 (239)
T ss_pred HHHHHh-cCCcEEEECCCCCCCCCC---CHHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHH
Confidence 333332 468999999999985221 1222222110 0 001223344445778888888543321
Q ss_pred ----------------------CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCC------CCcchhHH--HHHHH
Q 008029 345 ----------------------STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYS------SHYQEFEC--MRQEM 394 (580)
Q Consensus 345 ----------------------~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~------~~~~~~~~--~r~~l 394 (580)
...+|++||++.|++... . .+|+++|+|+..... ..+..... ....|
T Consensus 125 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~-~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l 201 (239)
T TIGR03729 125 ILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDN--K-QVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHF 201 (239)
T ss_pred HHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCC--C-CEEEEEcccchHHHhcCCCCCcchhhhhhccChHHH
Confidence 136789999999988642 2 378888887754211 11211111 14689
Q ss_pred HHHHHhcCCcEEEEccccCce
Q 008029 395 EALLYQYGVDIVFSGHVHAYE 415 (580)
Q Consensus 395 ~~Ll~ky~VdlvlsGH~H~ye 415 (580)
.+++++++|+++|+||+|.-.
T Consensus 202 ~~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 202 GQLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHHhCCCEEEECCccCCC
Confidence 999999999999999999864
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.60 E-value=7.8e-15 Score=157.04 Aligned_cols=114 Identities=20% Similarity=0.236 Sum_probs=79.0
Q ss_pred CcceEEEE-eCcEEEEEEcCcccC-----CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcc-----hhHH
Q 008029 321 SNFYYSFN-AGGVHFIMLGAYVDY-----NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQ-----EFEC 389 (580)
Q Consensus 321 ~~~yYsfd-~G~v~fI~Ldt~~~~-----~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~-----~~~~ 389 (580)
+..||+|+ .++++||+||+.... ....+|++||+++|++. +.+++||++|||++........ ....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 899999999996431 34799999999999974 3456999999998765432110 1112
Q ss_pred HHHHHHHHHHhc-CCcEEEEccccCceeEeec-cccccCCCCcEEEEeCC
Q 008029 390 MRQEMEALLYQY-GVDIVFSGHVHAYERMNRV-YNYTLDACGPVYITVGD 437 (580)
Q Consensus 390 ~r~~l~~Ll~ky-~VdlvlsGH~H~yeR~~pv-~n~~~~~~G~vyIv~G~ 437 (580)
..++|.++|++| +|.++|+||.|......-- -+...-..|...|.+++
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaS 416 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTAS 416 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccc
Confidence 346899999999 7999999999986544210 01111123666676654
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.52 E-value=1.9e-13 Score=140.06 Aligned_cols=179 Identities=24% Similarity=0.305 Sum_probs=117.3
Q ss_pred eEEEEEcccCCCC--C-h----HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHH
Q 008029 200 HRIAVIGDLGLTS--N-S----STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGW 272 (580)
Q Consensus 200 ~rfav~gD~g~~~--~-~----~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~ 272 (580)
+||++++|.|... . . .++++++...+||++|++||+++.. . ...++..
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~-------~------------------~~~~~~~ 55 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDG-------E------------------PEEYRRL 55 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCC-------C------------------HHHHHHH
Confidence 4899999999982 2 2 2344566667899999999999641 1 1233445
Q ss_pred HHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEe-CcEEEEEEcCcccC----CCcH
Q 008029 273 GRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNA-GGVHFIMLGAYVDY----NSTG 347 (580)
Q Consensus 273 ~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~-G~v~fI~Ldt~~~~----~~~~ 347 (580)
.++++.+....|++++|||||..... ...+...+.... ..+..... ++++++.+|+.... ....
T Consensus 56 ~~~l~~~~~~~~~~~vpGNHD~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~ 124 (301)
T COG1409 56 KELLARLELPAPVIVVPGNHDARVVN----GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGA 124 (301)
T ss_pred HHHHhhccCCCceEeeCCCCcCCchH----HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECH
Confidence 56666555578999999999986432 222222221110 01111222 67899999986542 3579
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcC--CcEEEEccccCc
Q 008029 348 AQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYG--VDIVFSGHVHAY 414 (580)
Q Consensus 348 ~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~--VdlvlsGH~H~y 414 (580)
.|++||++.|++........+|+++|+|+.................+..++..++ |+++|+||.|.-
T Consensus 125 ~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 125 EQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHHHHHHHHHhCccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 9999999999986533112467888888776543322222233456777888888 999999999976
No 24
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.50 E-value=3.6e-14 Score=112.17 Aligned_cols=62 Identities=42% Similarity=0.664 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCCccccccCCCCCCCCCCCCCCCCCCcccceeecccccCCCCCCcCCCCCCCcceeeecCccEEEEEEEc
Q 008029 428 CGPVYITVGDGGNIEQVDVDHADDPGKCPSAGENLPEFGGVCHLNFTSGPAKGKFCWSKQPEWSAYRESSFGHGILEVVN 507 (580)
Q Consensus 428 ~G~vyIv~G~gG~~e~~~~~~~~~~~~~p~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~p~~sa~~~~~~G~~~l~v~n 507 (580)
.|||||++|+||+ ++.. ++.++|+|+++|..+|||++|+|.|
T Consensus 1 kapVhiv~G~aG~--~l~~------------------------------------~~~~~~~wsa~r~~~~Gy~~l~v~N 42 (62)
T PF14008_consen 1 KAPVHIVVGAAGN--GLDP------------------------------------FPYPPPEWSAFRDSEYGYGRLTVAN 42 (62)
T ss_dssp TS-EEEEE--S-T------------------------------------------B-SS--TTEEEEE---EEEEEEE-S
T ss_pred CCCEEEEECcCCC--Cccc------------------------------------ccCCCCCeeeeeccccCEEEEEEEc
Confidence 4799999999999 3221 1246799999999999999999999
Q ss_pred CcceEEEEEEccCCCCCCccceEE
Q 008029 508 STYALWTWHRNQDNYKEDSRGDHI 531 (580)
Q Consensus 508 ~t~~~~~~~~~~~~~~~~~v~d~~ 531 (580)
+|||+|+|+++.++ +|+|+|
T Consensus 43 ~T~l~~e~i~~~~g----~v~D~f 62 (62)
T PF14008_consen 43 ATHLHWEFIRSDDG----SVLDEF 62 (62)
T ss_dssp SSEEEEEEEETTS-----T-CEE-
T ss_pred CCeEEEEEEECCCC----cEecCC
Confidence 99999999999886 399986
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.50 E-value=2.7e-13 Score=125.04 Aligned_cols=132 Identities=26% Similarity=0.376 Sum_probs=90.7
Q ss_pred EEEEcccCCCCChH-----------HHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHH
Q 008029 202 IAVIGDLGLTSNSS-----------TTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWD 270 (580)
Q Consensus 202 fav~gD~g~~~~~~-----------~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd 270 (580)
|++++|+|.+.... ..++.+.+.++|+|+++||+++.. . +..|+
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~-------~------------------~~~~~ 55 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRG-------L------------------PEEFE 55 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCC-------C------------------HHHHH
Confidence 57899999875421 134445567999999999999641 1 23456
Q ss_pred HHHHhhhhhccC-CCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHH
Q 008029 271 GWGRFMEPLTSR-VPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQ 349 (580)
Q Consensus 271 ~~~~~l~~l~~~-vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q 349 (580)
.+.++++.+... +|++.++||||.
T Consensus 56 ~~~~~~~~l~~~~~~~~~v~GNHD~------------------------------------------------------- 80 (144)
T cd07400 56 EAREFLDALPAPLEPVLVVPGNHDV------------------------------------------------------- 80 (144)
T ss_pred HHHHHHHHccccCCcEEEeCCCCeE-------------------------------------------------------
Confidence 666777776543 699999999995
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCC
Q 008029 350 YAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACG 429 (580)
Q Consensus 350 ~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G 429 (580)
|+++|+|++......... ...++.+.+++.+++++++++||+|......-. ...++
T Consensus 81 -------------------iv~~Hhp~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~----~~~~~ 136 (144)
T cd07400 81 -------------------IVVLHHPLVPPPGSGRER-LLDAGDALKLLAEAGVDLVLHGHKHVPYVGNIS----NAGGG 136 (144)
T ss_pred -------------------EEEecCCCCCCCcccccc-CCCHHHHHHHHHHcCCCEEEECCCCCcCeeecc----CCCCC
Confidence 788888877654321111 114567999999999999999999987654311 12456
Q ss_pred cEEEEeCC
Q 008029 430 PVYITVGD 437 (580)
Q Consensus 430 ~vyIv~G~ 437 (580)
++++..|+
T Consensus 137 ~~~~~aGs 144 (144)
T cd07400 137 LVVIGAGT 144 (144)
T ss_pred EEEEecCC
Confidence 67776664
No 26
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.47 E-value=7e-13 Score=131.13 Aligned_cols=187 Identities=20% Similarity=0.187 Sum_probs=112.9
Q ss_pred CeEEEEEcccCCCCC-----hHHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHH
Q 008029 199 PHRIAVIGDLGLTSN-----SSTTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWG 273 (580)
Q Consensus 199 ~~rfav~gD~g~~~~-----~~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~ 273 (580)
++||++++|+|.... ..+.++.+.+.+||+++++||+++.... .. +.+.
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~------------------------~~--~~~~ 54 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVD------------------------VL--ELLL 54 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcch------------------------hh--HHHH
Confidence 479999999998753 2345666667899999999999964210 00 2345
Q ss_pred HhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHHH
Q 008029 274 RFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAWL 353 (580)
Q Consensus 274 ~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~WL 353 (580)
+.++.+....|+++++||||+...... .+........+.. ..+.+..++.++..+....-. ......+++
T Consensus 55 ~~l~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~~-----L~~~~~~~~~~~~~i~i~G~~----~~~~~~~~~ 124 (223)
T cd07385 55 ELLKKLKAPLGVYAVLGNHDYYSGDEE-NWIEALESAGITV-----LRNESVEISVGGATIGIAGVD----DGLGRRPDL 124 (223)
T ss_pred HHHhccCCCCCEEEECCCcccccCchH-HHHHHHHHcCCEE-----eecCcEEeccCCeEEEEEecc----CccccCCCH
Confidence 566666677999999999998643221 1012222211111 123345566665444443211 112233566
Q ss_pred HHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccc---------
Q 008029 354 KEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYT--------- 424 (580)
Q Consensus 354 e~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~--------- 424 (580)
.+.+++.+ ...+.|++.|.|.+.. .+.+.++|++++||+|..+...|.....
T Consensus 125 ~~~~~~~~--~~~~~I~l~H~P~~~~-----------------~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~ 185 (223)
T cd07385 125 EKALKGLD--EDDPNILLAHQPDTAE-----------------EAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPY 185 (223)
T ss_pred HHHHhCCC--CCCCEEEEecCCChhH-----------------HhcccCccEEEeccCCCCEEeccccccccchhhcCcc
Confidence 66666643 3446899999984321 1256799999999999998776543220
Q ss_pred -----cCCCCcEEEEeCCCCc
Q 008029 425 -----LDACGPVYITVGDGGN 440 (580)
Q Consensus 425 -----~~~~G~vyIv~G~gG~ 440 (580)
...+..+||..|.|..
T Consensus 186 ~~G~~~~~~~~~~Vs~G~G~~ 206 (223)
T cd07385 186 DYGLYRKGGSQLYVSRGLGTW 206 (223)
T ss_pred cceEEEECCEEEEEcCCccCC
Confidence 0133467777776664
No 27
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.46 E-value=2.4e-13 Score=128.69 Aligned_cols=145 Identities=20% Similarity=0.282 Sum_probs=89.7
Q ss_pred EEEEcccCCCCChHHHH--HHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhh
Q 008029 202 IAVIGDLGLTSNSSTTV--DHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPL 279 (580)
Q Consensus 202 fav~gD~g~~~~~~~~l--~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l 279 (580)
|+++||+|......... +.+.+.++|+++++||+++.. . ...+.. .....
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~-------~------------------~~~~~~---~~~~~ 52 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLT-------D------------------APRFAP---LLLAL 52 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCc-------c------------------hHHHHH---HHHhh
Confidence 57899999875433221 223456899999999999531 1 011211 22233
Q ss_pred ccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCC-cHHHHHHHHHHHH
Q 008029 280 TSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNS-TGAQYAWLKEDLH 358 (580)
Q Consensus 280 ~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~-~~~Q~~WLe~~L~ 358 (580)
....|+++++||||+. +.|+....+.++.. ..++.+|+.++++
T Consensus 53 ~~~~~v~~v~GNHD~~------------------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~ 96 (166)
T cd07404 53 KGFEPVIYVPGNHEFY------------------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR 96 (166)
T ss_pred cCCccEEEeCCCcceE------------------------------------EEEEeeecccccCccchHHHHhCCCCCC
Confidence 4578999999999973 23333332333222 3355666666554
Q ss_pred hccCCCCCeEEEEeCCCCccCCCCC-c--c-hhHHHHHHHHHHHHhcCCcEEEEccccCceeE
Q 008029 359 KLDRTVTPWLAAAWHPPWYNSYSSH-Y--Q-EFECMRQEMEALLYQYGVDIVFSGHVHAYERM 417 (580)
Q Consensus 359 ~~~r~~~pwvIv~~H~P~y~s~~~~-~--~-~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~ 417 (580)
..+|+++|+|+....... . . .....++.+..++++++|+++++||+|.....
T Consensus 97 -------~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 -------GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred -------CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 237888888887654221 1 1 11234566778888999999999999986443
No 28
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.43 E-value=7.8e-12 Score=123.95 Aligned_cols=173 Identities=13% Similarity=0.148 Sum_probs=103.1
Q ss_pred CeEEEEEcccCCCCCh-HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhh
Q 008029 199 PHRIAVIGDLGLTSNS-STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFME 277 (580)
Q Consensus 199 ~~rfav~gD~g~~~~~-~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~ 277 (580)
+.||++++|+|..... .+.++.+.+.++|+|+++||+++... . . .....+.+.++
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~------~--------------~----~~~~~~l~~l~ 59 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAA------K--------------S----EDYAAFFRILG 59 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCC------C--------------H----HHHHHHHHHHH
Confidence 6799999999975332 23344444578999999999996310 0 0 11223333343
Q ss_pred hhccCCCeEEecCCCCCCCCcccccHHHHHhhcC----CCCCCCCCCCcceEEEEe-CcEEEEEEcCcccC--CCcHHHH
Q 008029 278 PLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFA----VPSEESGSNSNFYYSFNA-GGVHFIMLGAYVDY--NSTGAQY 350 (580)
Q Consensus 278 ~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~----~P~~~~~~~~~~yYsfd~-G~v~fI~Ldt~~~~--~~~~~Q~ 350 (580)
.+ .+|+++++||||.. ........|. +|..- ..... ...+ |+++|+.|+....+ ..+++|.
T Consensus 60 ~l--~~pv~~V~GNhD~~------v~~~l~~~~~~~~~~p~~~--~lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~ 127 (224)
T cd07388 60 EA--HLPTFYVPGPQDAP------LWEYLREAYNAELVHPEIR--NVHET--FAFWRGPYLVAGVGGEIADEGEPEEHEA 127 (224)
T ss_pred hc--CCceEEEcCCCChH------HHHHHHHHhcccccCccce--ecCCC--eEEecCCeEEEEecCCcCCCCCcCHHHH
Confidence 33 58999999999952 0111111221 12210 01111 2334 56999999975433 2345552
Q ss_pred ----HHHHH-HHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEcccc
Q 008029 351 ----AWLKE-DLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVH 412 (580)
Q Consensus 351 ----~WLe~-~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H 412 (580)
+||.+ .|+...+......|+++|+|+|.....+.. ...+..++++++..++++||+|
T Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h~G-----S~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 128 LRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNEQG-----SHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred hhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCccC-----HHHHHHHHHHhCCCEEEEcCCc
Confidence 56533 222221112345899999999987432322 3577789999999999999999
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.42 E-value=1.6e-12 Score=128.22 Aligned_cols=185 Identities=18% Similarity=0.175 Sum_probs=105.7
Q ss_pred EEEEEcccCCCCCh----------------HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccc
Q 008029 201 RIAVIGDLGLTSNS----------------STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRET 264 (580)
Q Consensus 201 rfav~gD~g~~~~~----------------~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~ 264 (580)
||++++|+|.+... .++++.+.+.+||+|+++||+++.... .
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~--~-------------------- 58 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNP--S-------------------- 58 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCC--C--------------------
Confidence 68999999987431 234445556799999999999864210 0
Q ss_pred cHHHHHHHHHhhhhhc-cCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCC--CCCCCCcceEEEEeCcEEEEEEcCcc
Q 008029 265 YQPRWDGWGRFMEPLT-SRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSE--ESGSNSNFYYSFNAGGVHFIMLGAYV 341 (580)
Q Consensus 265 y~~~wd~~~~~l~~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~--~~~~~~~~yYsfd~G~v~fI~Ldt~~ 341 (580)
...+..+.+.++.+. ..+|+++++||||....... .........+... ...........++.+++.|+.++...
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~ 135 (223)
T cd00840 59 -PEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLGA--LSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLR 135 (223)
T ss_pred -HHHHHHHHHHHHHHHHCCCCEEEecCCCCCcccccc--ccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCC
Confidence 123455566666654 57999999999998643221 1111111110000 00001112233444568888887432
Q ss_pred cCCCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeE
Q 008029 342 DYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERM 417 (580)
Q Consensus 342 ~~~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~ 417 (580)
. .....+.+++++.+.+.. .....|++.|.|+.......... .......+...++|++++||.|..+..
T Consensus 136 ~-~~~~~~~~~~~~~~~~~~--~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 136 R-SRLRDLLADAELRPRPLD--PDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred H-HHHHHHHHHHHHHhhccC--CCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 1 112334455555555543 34568999999976543221110 123344566789999999999987543
No 30
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.41 E-value=8e-12 Score=132.82 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=66.9
Q ss_pred cceEEEE-eCcE--EEEEEcCccc-----------CCCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCC---c
Q 008029 322 NFYYSFN-AGGV--HFIMLGAYVD-----------YNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSH---Y 384 (580)
Q Consensus 322 ~~yYsfd-~G~v--~fI~Ldt~~~-----------~~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~---~ 384 (580)
..||+|+ .|++ |+|+||+... .....+|++||+++|+++.. +.+++|+++|+|+.+..... +
T Consensus 292 ~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~w 370 (492)
T TIGR03768 292 FACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEMEW 370 (492)
T ss_pred cceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhhh
Confidence 4599999 5855 9999998641 12469999999999999753 45789999999987632111 1
Q ss_pred c----------hhHHHHHHHHHHHHhc-CCcEEEEccccCc
Q 008029 385 Q----------EFECMRQEMEALLYQY-GVDIVFSGHVHAY 414 (580)
Q Consensus 385 ~----------~~~~~r~~l~~Ll~ky-~VdlvlsGH~H~y 414 (580)
. .....-.+|..+|.+| +|.++||||.|.-
T Consensus 371 ~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn 411 (492)
T TIGR03768 371 WLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLN 411 (492)
T ss_pred ccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccc
Confidence 1 0001124799999999 6999999999963
No 31
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.40 E-value=3.2e-11 Score=122.55 Aligned_cols=210 Identities=19% Similarity=0.320 Sum_probs=119.1
Q ss_pred CCeEEEEEcccCCCCC--------------------hHHHHHHHH-HCCCCEEEEcccccccccccccCCCCCcccccCC
Q 008029 198 YPHRIAVIGDLGLTSN--------------------SSTTVDHLI-QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAF 256 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~--------------------~~~~l~~i~-~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~ 256 (580)
.+|||+.++|+|.+.. ....+++++ .++||||+++||++++..-
T Consensus 52 g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t--------------- 116 (379)
T KOG1432|consen 52 GTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST--------------- 116 (379)
T ss_pred CceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc---------------
Confidence 3799999999998743 123455554 4799999999999976210
Q ss_pred CCCccccccHHHHHHHHHhhhhh-ccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCC--CC-CCcceEEEEeCc-
Q 008029 257 PDAPIRETYQPRWDGWGRFMEPL-TSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEES--GS-NSNFYYSFNAGG- 331 (580)
Q Consensus 257 ~~~p~~e~y~~~wd~~~~~l~~l-~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~--~~-~~~~yYsfd~G~- 331 (580)
..++ ..+.+.++|. ..++||.++.||||-+..........+... +|..-+ .+ .+..+--..+|+
T Consensus 117 ------~Da~---~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~--lP~s~~~v~p~dg~~~~~~g~gny 185 (379)
T KOG1432|consen 117 ------QDAA---TSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISK--LPYSLSQVNPPDGHMYIIDGFGNY 185 (379)
T ss_pred ------HhHH---HHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhc--CCCccccCCCcccceeeeecccce
Confidence 1122 3345566664 479999999999998755443333333332 222111 01 111111111221
Q ss_pred -----------------EEEEEEcCcccC----------CCcHHHHHHHHHHHHh---ccCCCCC-eEEEEeCCCCc--c
Q 008029 332 -----------------VHFIMLGAYVDY----------NSTGAQYAWLKEDLHK---LDRTVTP-WLAAAWHPPWY--N 378 (580)
Q Consensus 332 -----------------v~fI~Ldt~~~~----------~~~~~Q~~WLe~~L~~---~~r~~~p-wvIv~~H~P~y--~ 378 (580)
..+++||+..+. .....|.+||+..-.+ .+..-.| --++++|.|+- .
T Consensus 186 n~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~ 265 (379)
T KOG1432|consen 186 NLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFL 265 (379)
T ss_pred EEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHh
Confidence 124455543221 2368899999988733 1222233 46888999863 2
Q ss_pred CCCC------Ccchh---HHHHHHHHHHHH-hcCCcEEEEccccCceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 379 SYSS------HYQEF---ECMRQEMEALLY-QYGVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 379 s~~~------~~~~~---~~~r~~l~~Ll~-ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
.... ..++. ......+...|. ..+|+.|++||+|...--.+. .|.+++.=|+|+.
T Consensus 266 ~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~-------k~~~wlCygGgaG 330 (379)
T KOG1432|consen 266 ELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGEL-------KGELWLCYGGGAG 330 (379)
T ss_pred hccCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccceeccc-------CCeEEEEecCCCc
Confidence 2111 11111 111235666666 679999999999986655432 3446666665544
No 32
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.40 E-value=4.6e-12 Score=129.70 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=97.5
Q ss_pred CeEEEEEcccCCCCC-----hHHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHH
Q 008029 199 PHRIAVIGDLGLTSN-----SSTTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWG 273 (580)
Q Consensus 199 ~~rfav~gD~g~~~~-----~~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~ 273 (580)
++||++++|+|.... ..+.++.+.+.+||+|+++||+++.+. . ..++.+.
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~---~----------------------~~~~~~~ 103 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDM---P----------------------LNFSAFS 103 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCc---c----------------------ccHHHHH
Confidence 699999999998632 234555666789999999999985210 0 1234566
Q ss_pred HhhhhhccCCCeEEecCCCCCCCCccc-ccHHHHHhhcCCCCCCCCCCCcceEEEEeCc--EEEEEEcCcccCCCcHHHH
Q 008029 274 RFMEPLTSRVPMMVIEGNHEIEPQVAG-ITFKSYLTRFAVPSEESGSNSNFYYSFNAGG--VHFIMLGAYVDYNSTGAQY 350 (580)
Q Consensus 274 ~~l~~l~~~vP~~~v~GNHD~~~~~~~-~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~--v~fI~Ldt~~~~~~~~~Q~ 350 (580)
+.++.+.+..|+++++||||+...... +.+....+.-.+. -..+....+..++ +.++.++-... +...
T Consensus 104 ~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~-----lL~n~~~~i~~~~~~i~i~G~~d~~~---~~~~- 174 (271)
T PRK11340 104 DVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT-----VLFNQATVIATPNRQFELVGTGDLWA---GQCK- 174 (271)
T ss_pred HHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE-----EeeCCeEEEeeCCcEEEEEEecchhc---cCCC-
Confidence 677777767899999999998532111 1122222211110 0123345555543 56666653211 1100
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeec
Q 008029 351 AWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRV 420 (580)
Q Consensus 351 ~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv 420 (580)
..+.++ ++ ...|++.|.|-+- +.+.+.++|++||||+|.-|-..|.
T Consensus 175 --~~~~~~----~~-~~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 175 --PPPASE----AN-LPRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred --hhHhcC----CC-CCeEEEEcCCChh-----------------HhhccCCCCEEEeccccCCeEEccc
Confidence 111121 12 3488999999431 1234678999999999998877664
No 33
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.27 E-value=3.7e-11 Score=106.65 Aligned_cols=116 Identities=29% Similarity=0.413 Sum_probs=81.9
Q ss_pred EEEcccCCCCChHHHH---HHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhh
Q 008029 203 AVIGDLGLTSNSSTTV---DHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPL 279 (580)
Q Consensus 203 av~gD~g~~~~~~~~l---~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l 279 (580)
+++||+|......... ....+.++|+|+++||+++.... ..+..+.......
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~-------------------------~~~~~~~~~~~~~ 55 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPD-------------------------PEEVLAAALALLL 55 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCC-------------------------chHHHHHHHHHhh
Confidence 3689999886544332 34456799999999999975211 1122222133334
Q ss_pred ccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHHHHHHHHh
Q 008029 280 TSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAWLKEDLHK 359 (580)
Q Consensus 280 ~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~L~~ 359 (580)
....|+++++||||
T Consensus 56 ~~~~~~~~~~GNHD------------------------------------------------------------------ 69 (131)
T cd00838 56 LLGIPVYVVPGNHD------------------------------------------------------------------ 69 (131)
T ss_pred cCCCCEEEeCCCce------------------------------------------------------------------
Confidence 56899999999999
Q ss_pred ccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEe
Q 008029 360 LDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMN 418 (580)
Q Consensus 360 ~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~ 418 (580)
|++.|.|++.............+..+..++.+++++++|+||.|.+.+..
T Consensus 70 ---------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 70 ---------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred ---------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 89999998776433222222257788999999999999999999998874
No 34
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.21 E-value=2.1e-10 Score=114.07 Aligned_cols=178 Identities=23% Similarity=0.287 Sum_probs=112.1
Q ss_pred EEEEEcccCCCCChHHHHHHHH----HCCCCEEEEcccccccccccccCCCCCc--ccccCCCCCccccccHHHHHHHH-
Q 008029 201 RIAVIGDLGLTSNSSTTVDHLI----QNDPSLILMVGDLTYANQYLTTGGKAAS--CYSCAFPDAPIRETYQPRWDGWG- 273 (580)
Q Consensus 201 rfav~gD~g~~~~~~~~l~~i~----~~~pDfvl~~GDl~Y~d~~~~~GG~~~~--c~~~~~~~~p~~e~y~~~wd~~~- 273 (580)
||++.++.+...........+. +.+||++|++||.+|++...... .... --..........+.|+.++..+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~ 79 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLM-PALIEGRPLEPAHEALTLEEYRERYRQYRS 79 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCccc-ccccCCcCcCCcccccCHHHHHHHHHHHcC
Confidence 4778888777655555555554 78999999999999997421100 0000 00000001123445555565552
Q ss_pred -HhhhhhccCCCeEEecCCCCCCCCccc----------------ccHHHHHhhcCCCCCCCC--CCCcceEEEEeCcE-E
Q 008029 274 -RFMEPLTSRVPMMVIEGNHEIEPQVAG----------------ITFKSYLTRFAVPSEESG--SNSNFYYSFNAGGV-H 333 (580)
Q Consensus 274 -~~l~~l~~~vP~~~v~GNHD~~~~~~~----------------~~f~~y~~~f~~P~~~~~--~~~~~yYsfd~G~v-~ 333 (580)
..++.+.+.+|++.++.+||+..+... .....|......+..... .....|++|.+|.. .
T Consensus 80 ~p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~ 159 (228)
T cd07389 80 DPDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVD 159 (228)
T ss_pred CHHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcce
Confidence 346677789999999999999876543 112345555544443322 34678999999986 9
Q ss_pred EEEEcCcccCCCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCC--cEEEEccc
Q 008029 334 FIMLGAYVDYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGV--DIVFSGHV 411 (580)
Q Consensus 334 fI~Ldt~~~~~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~V--dlvlsGH~ 411 (580)
|++||++... ..|......|+.+..++.+.++ -++|||++
T Consensus 160 ~~~lD~R~~R--------------------------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDv 201 (228)
T cd07389 160 LILLDTRTYR--------------------------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDV 201 (228)
T ss_pred EEEEeccccc--------------------------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHH
Confidence 9999998754 2333444567788777666543 48899999
Q ss_pred cCceeE
Q 008029 412 HAYERM 417 (580)
Q Consensus 412 H~yeR~ 417 (580)
|..+-.
T Consensus 202 H~~~~~ 207 (228)
T cd07389 202 HLAEAS 207 (228)
T ss_pred HHHHHh
Confidence 975443
No 35
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.17 E-value=1.5e-10 Score=107.49 Aligned_cols=137 Identities=23% Similarity=0.371 Sum_probs=81.2
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhh
Q 008029 200 HRIAVIGDLGLTSNS-STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEP 278 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~ 278 (580)
|||+++||+|..... .+.++.+ +++|+|+++||++.. .++.+.++.
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~-------------------------------~~~~~~~~~ 47 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP-------------------------------EEVLELLRD 47 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH-------------------------------HHHHHHHHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH-------------------------------HHHHHHHhc
Confidence 699999999986432 3455555 579999999999731 223333433
Q ss_pred hccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHHHHHHHH
Q 008029 279 LTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAWLKEDLH 358 (580)
Q Consensus 279 l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~L~ 358 (580)
+ |++++.||||... +....... . +.
T Consensus 48 ~----~~~~v~GNHD~~~---------~~~~~~~~---------~---------------------------------~~ 72 (156)
T PF12850_consen 48 I----PVYVVRGNHDNWA---------FPNENDEE---------Y---------------------------------LL 72 (156)
T ss_dssp H----EEEEE--CCHSTH---------HHSEECTC---------S---------------------------------SH
T ss_pred C----CEEEEeCCccccc---------chhhhhcc---------c---------------------------------cc
Confidence 3 8999999999521 11111000 0 11
Q ss_pred h-ccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcEEEEeCC
Q 008029 359 K-LDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGD 437 (580)
Q Consensus 359 ~-~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~ 437 (580)
. ....-....|++.|...+.... ..+.+..++...+++++++||.|...... .+|+.++..|+
T Consensus 73 ~~~~~~~~~~~i~~~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~--------~~~~~~~~~Gs 136 (156)
T PF12850_consen 73 DALRLTIDGFKILLSHGHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFK--------IGGIHVINPGS 136 (156)
T ss_dssp SEEEEEETTEEEEEESSTSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEE--------ETTEEEEEE-G
T ss_pred cceeeeecCCeEEEECCCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEE--------ECCEEEEECCc
Confidence 1 0001123578888876655321 12346677889999999999999977753 45788888887
Q ss_pred CCc
Q 008029 438 GGN 440 (580)
Q Consensus 438 gG~ 440 (580)
.+.
T Consensus 137 ~~~ 139 (156)
T PF12850_consen 137 IGG 139 (156)
T ss_dssp SSS
T ss_pred CCC
Confidence 665
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.13 E-value=2.3e-09 Score=106.89 Aligned_cols=195 Identities=19% Similarity=0.180 Sum_probs=102.4
Q ss_pred eEEEEEcccCCCCChHHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhh
Q 008029 200 HRIAVIGDLGLTSNSSTTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPL 279 (580)
Q Consensus 200 ~rfav~gD~g~~~~~~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l 279 (580)
+||+++||+|..... ...+.+.+.+||+|+++||++... ..+.+.+..+
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~~------------------------------~~~~~~l~~l 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNES------------------------------VQLVRAISSL 49 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcCh------------------------------HHHHHHHHhC
Confidence 589999999976443 234556667999999999998321 1122333333
Q ss_pred ccCCCeEEecCCCCCCCCccc-ccHHHHHhhcCCCCCCCCCCCcceEE---EEeCcEEEEEEcCccc-------------
Q 008029 280 TSRVPMMVIEGNHEIEPQVAG-ITFKSYLTRFAVPSEESGSNSNFYYS---FNAGGVHFIMLGAYVD------------- 342 (580)
Q Consensus 280 ~~~vP~~~v~GNHD~~~~~~~-~~f~~y~~~f~~P~~~~~~~~~~yYs---fd~G~v~fI~Ldt~~~------------- 342 (580)
..|+++++||||....... ..+..+......... .... .++....+.++.++..
T Consensus 50 --~~p~~~V~GNHD~~~~~~~~~k~~~l~~~L~~lg~-------~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~v 120 (238)
T cd07397 50 --PLPKAVILGNHDAWYDATFRKKGDRVQEQLELLGD-------LHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAV 120 (238)
T ss_pred --CCCeEEEcCCCcccccccccchHHHHHHHHHHhCC-------cEEeecccccCCCCeEEEeeCCccCCCccccCHHHH
Confidence 4799999999998643211 022233333221111 1111 1111112222222110
Q ss_pred ---C--CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCC-------------CcchhHHHHHHHHHHHHhcCCc
Q 008029 343 ---Y--NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSS-------------HYQEFECMRQEMEALLYQYGVD 404 (580)
Q Consensus 343 ---~--~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~-------------~~~~~~~~r~~l~~Ll~ky~Vd 404 (580)
| ....+-.+.+-+.++.++.. .+ .|++.|.++....+. .......+++++..+-..-.++
T Consensus 121 r~~fgi~s~~eA~~~ive~~~~~~~~-~~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~ 198 (238)
T cd07397 121 KAVYGVISLEESAQRIIAAAKKAPPD-LP-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVP 198 (238)
T ss_pred HHHhCCCCHHHHHHHHHHHhhhcCCC-CC-eEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCC
Confidence 1 11233344444444333322 23 788899988655311 0112345666776555344589
Q ss_pred EEEEccccCceeEeeccc--cccCCCCcEEEEeC
Q 008029 405 IVFSGHVHAYERMNRVYN--YTLDACGPVYITVG 436 (580)
Q Consensus 405 lvlsGH~H~yeR~~pv~n--~~~~~~G~vyIv~G 436 (580)
++++||+|.--|...-.. ...+..|++|+...
T Consensus 199 l~~fGH~H~~l~~~~~~r~~~~~~~~gt~y~N~a 232 (238)
T cd07397 199 LVVFGHMHHRLRRGKGLRNMIAVDREGTVYLNAA 232 (238)
T ss_pred EEEeCCccCcccccccccceeeecCCCeEEEecc
Confidence 999999997533221000 11366899998543
No 37
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.11 E-value=5.1e-10 Score=102.33 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=74.3
Q ss_pred EEEEEcccCCCCChHHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhhc
Q 008029 201 RIAVIGDLGLTSNSSTTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLT 280 (580)
Q Consensus 201 rfav~gD~g~~~~~~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l~ 280 (580)
||+++||+|.... .+...++|+++++||+++.. . ...++.+.+.++.+.
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~-------~------------------~~~~~~~~~~l~~~~ 49 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERG-------T------------------LEELQKFLDWLKSLP 49 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCC-------C------------------HHHHHHHHHHHHhCC
Confidence 5899999998754 23346899999999998531 1 112334445555442
Q ss_pred cCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHHHHHHHHhc
Q 008029 281 SRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAWLKEDLHKL 360 (580)
Q Consensus 281 ~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~WLe~~L~~~ 360 (580)
..++++++||||.... .
T Consensus 50 -~~~~~~v~GNHD~~~~--------------------------------------------------------------~ 66 (135)
T cd07379 50 -HPHKIVIAGNHDLTLD--------------------------------------------------------------P 66 (135)
T ss_pred -CCeEEEEECCCCCcCC--------------------------------------------------------------C
Confidence 1235789999996310 0
Q ss_pred cCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCce
Q 008029 361 DRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYE 415 (580)
Q Consensus 361 ~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~ye 415 (580)
..+.|++.|.|++............-...+.+++.+++++++++||+|...
T Consensus 67 ----~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 67 ----EDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred ----CCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 123688889988765422111011112456777888999999999999864
No 38
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=112.47 Aligned_cols=174 Identities=21% Similarity=0.263 Sum_probs=100.3
Q ss_pred CCeEEEEEcccCCCCCh---HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHH
Q 008029 198 YPHRIAVIGDLGLTSNS---STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGR 274 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~~---~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~ 274 (580)
..++|+.++|+|..... .+.+.++....||+|+++||+++.+. . +.+..+.+
T Consensus 43 ~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~------~-------------------~~~~~~~~ 97 (284)
T COG1408 43 QGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDR------P-------------------PGVAALAL 97 (284)
T ss_pred CCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCC------C-------------------CCHHHHHH
Confidence 36899999999997655 34455566678999999999996410 0 23466778
Q ss_pred hhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhc--CCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHH
Q 008029 275 FMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRF--AVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAW 352 (580)
Q Consensus 275 ~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f--~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~W 352 (580)
.+++|.+..+++++.||||+.....+.......+.. ..-.++........-.++.++.++. +..-+++..-
T Consensus 98 ~L~~L~~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~~ 170 (284)
T COG1408 98 FLAKLKAPLGVFAVLGNHDYGVDRSNVYIGDLLEELGRVVLRNEIAVIDLLALRIEVGGLDLY-------LAGVEDILAG 170 (284)
T ss_pred HHHhhhccCCEEEEecccccccccccchhhhhhhhcceeeecccchhcccccccccccccccc-------cccCchHHhh
Confidence 888999999999999999997554332111111111 0000000000000000222221111 0111222222
Q ss_pred -----------HHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeecc
Q 008029 353 -----------LKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVY 421 (580)
Q Consensus 353 -----------Le~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~ 421 (580)
+.+.+.+.+ .....|++.|.|-.- ..+.+++||++||||+|.-|-..|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~--~~~~~IlL~H~P~~~-----------------~~~~~~~~dLvLSGHTHGGQi~~p~~ 231 (284)
T COG1408 171 LPLAPFTIGLDIAEALKQLD--EDLPGILLSHEPDII-----------------LQLRLYGVDLVLSGHTHGGQIRLPLW 231 (284)
T ss_pred Ccccccccccchhhhhcccc--ccccceEeccCCcee-----------------hhhccCcceEEEeccccCCeEEeecc
Confidence 224444443 233589999999322 23556799999999999988887654
Q ss_pred c
Q 008029 422 N 422 (580)
Q Consensus 422 n 422 (580)
.
T Consensus 232 ~ 232 (284)
T COG1408 232 G 232 (284)
T ss_pred c
Confidence 3
No 39
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.02 E-value=2.9e-09 Score=107.12 Aligned_cols=198 Identities=17% Similarity=0.228 Sum_probs=105.0
Q ss_pred eEEEEEcccCCCCChHH----HHHHHH--HCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHH
Q 008029 200 HRIAVIGDLGLTSNSST----TVDHLI--QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWG 273 (580)
Q Consensus 200 ~rfav~gD~g~~~~~~~----~l~~i~--~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~ 273 (580)
+|+++++|+|.+..... .++.+. +.+||+|+++||+++. +.. . + . ..+......
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~--~~g---~--~---------~----~~~~~~~~~ 60 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEA--WIG---D--D---------D----PSPFAREIA 60 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceecc--ccc---c--C---------c----CCHHHHHHH
Confidence 58999999998754322 333332 3589999999999953 110 0 0 0 001123344
Q ss_pred Hhhhhhcc-CCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHH
Q 008029 274 RFMEPLTS-RVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAW 352 (580)
Q Consensus 274 ~~l~~l~~-~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~W 352 (580)
+.++.+.. .+|++.++||||.... ..+.....+.. -.....++.++.+++..-.... ...+..+++
T Consensus 61 ~~l~~l~~~g~~v~~v~GNHD~~~~------~~~~~~~g~~~------l~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~ 127 (241)
T PRK05340 61 AALKALSDSGVPCYFMHGNRDFLLG------KRFAKAAGMTL------LPDPSVIDLYGQRVLLLHGDTL-CTDDKAYQR 127 (241)
T ss_pred HHHHHHHHcCCeEEEEeCCCchhhh------HHHHHhCCCEE------eCCcEEEEECCEEEEEECCccc-ccCCHHHHH
Confidence 55565553 4899999999997421 12222222110 0112456777777776654322 123455555
Q ss_pred HHHHHHhccCCCCCeEEEEeCCCCccCCCC---------------Ccch-hHHHHHHHHHHHHhcCCcEEEEccccCcee
Q 008029 353 LKEDLHKLDRTVTPWLAAAWHPPWYNSYSS---------------HYQE-FECMRQEMEALLYQYGVDIVFSGHVHAYER 416 (580)
Q Consensus 353 Le~~L~~~~r~~~pwvIv~~H~P~y~s~~~---------------~~~~-~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR 416 (580)
+++.+.. ||....+|.+++..... .... .....+.+.+++.+++++++++||+|.-..
T Consensus 128 ~r~~~r~------~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 201 (241)
T PRK05340 128 FRRKVRN------PWLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI 201 (241)
T ss_pred HHHHHhC------HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcce
Confidence 5554443 12222233332211000 0000 000124677889999999999999998654
Q ss_pred EeeccccccCCCCcEEEEeCCCCc
Q 008029 417 MNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 417 ~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
.. +.+ +..+..|++.|+...
T Consensus 202 ~~-~~~---~~~~~~~~~lgdw~~ 221 (241)
T PRK05340 202 HQ-LQA---GGQPATRIVLGDWHE 221 (241)
T ss_pred ee-ccC---CCcceEEEEeCCCCC
Confidence 32 111 111246888888743
No 40
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.93 E-value=5.3e-09 Score=101.15 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=31.5
Q ss_pred EEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeE
Q 008029 369 AAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERM 417 (580)
Q Consensus 369 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~ 417 (580)
|++.|.|+..... ..+..++.+++++++|+||.|.+...
T Consensus 112 i~lsH~P~~~~~~----------~~~~~~~~~~~p~~Ifs~H~H~s~~~ 150 (195)
T cd08166 112 IMLSHVPLLAEGG----------QALKHVVTDLDPDLIFSAHRHKSSIF 150 (195)
T ss_pred eeeeccccccccc----------HHHHHHHHhcCceEEEEcCccceeeE
Confidence 8999999766432 26677888999999999999987665
No 41
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.92 E-value=7.8e-09 Score=96.47 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=38.3
Q ss_pred eEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 367 WLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 367 wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
+.|++.|.+....... . + . ..++.+.++|++++||+|...... .+++.++..|+.|.
T Consensus 76 ~~i~v~Hg~~~~~~~~----~---~-~-~~~~~~~~~d~vi~GHtH~~~~~~--------~~~~~~inpGs~~~ 132 (155)
T cd00841 76 KRIFLTHGHLYGVKNG----L---D-R-LYLAKEGGADVVLYGHTHIPVIEK--------IGGVLLLNPGSLSL 132 (155)
T ss_pred EEEEEECCcccccccc----h---h-h-hhhhhhcCCCEEEECcccCCccEE--------ECCEEEEeCCCccC
Confidence 3677888776543211 0 1 1 455677899999999999765432 35788888888775
No 42
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.91 E-value=1.5e-08 Score=96.67 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.0
Q ss_pred EEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEe
Q 008029 369 AAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMN 418 (580)
Q Consensus 369 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~ 418 (580)
|++.|.|.+. ++.+.+++++|+||+|.+-+..
T Consensus 119 i~l~H~p~~~------------------~~~~~~~~~~lsGH~H~~~~~~ 150 (171)
T cd07384 119 ILLTHIPLYR------------------LLDTIKPVLILSGHDHDQCEVV 150 (171)
T ss_pred eeEECCccHH------------------HHhccCceEEEeCcccCCeEEE
Confidence 8999998531 6677899999999999986654
No 43
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.88 E-value=1e-08 Score=96.31 Aligned_cols=52 Identities=23% Similarity=0.553 Sum_probs=33.2
Q ss_pred HHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhhc---cCCCeEEecCCCCCC
Q 008029 222 IQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLT---SRVPMMVIEGNHEIE 295 (580)
Q Consensus 222 ~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l~---~~vP~~~v~GNHD~~ 295 (580)
.+.+||+|+++||+++..... . ...|..+...+..+. ..+|++.++||||..
T Consensus 35 ~~~~pd~vv~~GDl~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 35 WLLQPDVVFVLGDLFDEGKWS---------------------T-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HhcCCCEEEECCCCCCCCccC---------------------C-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 346999999999999642110 0 134544333333322 258999999999974
No 44
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.85 E-value=3.7e-08 Score=92.49 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=27.7
Q ss_pred eEEEEEcccCCCCChHH-HHHHHHHC-CCCEEEEccccc
Q 008029 200 HRIAVIGDLGLTSNSST-TVDHLIQN-DPSLILMVGDLT 236 (580)
Q Consensus 200 ~rfav~gD~g~~~~~~~-~l~~i~~~-~pDfvl~~GDl~ 236 (580)
+||+++||+|......+ .++.+... ++|.|+++||++
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC
Confidence 58999999997654433 33444455 899999999997
No 45
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.82 E-value=3.5e-07 Score=87.92 Aligned_cols=40 Identities=35% Similarity=0.598 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 393 EMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 393 ~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
.+..++.+.++|++++||+|...... .+|..++..|+.|.
T Consensus 97 ~~~~~~~~~~~dvii~GHTH~p~~~~--------~~g~~viNPGSv~~ 136 (178)
T cd07394 97 SLAALQRQLDVDILISGHTHKFEAFE--------HEGKFFINPGSATG 136 (178)
T ss_pred HHHHHHHhcCCCEEEECCCCcceEEE--------ECCEEEEECCCCCC
Confidence 44555667889999999999764432 35788898998774
No 46
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.80 E-value=9.1e-08 Score=92.98 Aligned_cols=194 Identities=21% Similarity=0.306 Sum_probs=91.6
Q ss_pred CeEEEEEcccCCCCCh-HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccc----cCCCCCc-cc--cccHH-HH
Q 008029 199 PHRIAVIGDLGLTSNS-STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYS----CAFPDAP-IR--ETYQP-RW 269 (580)
Q Consensus 199 ~~rfav~gD~g~~~~~-~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~----~~~~~~p-~~--e~y~~-~w 269 (580)
+-|+++++|.+..... .+.+..+.+.+||+++++||+.-... .+.++.+ ...|+.+ +. +.|+. ..
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a------~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~ 78 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEA------RSDEYERAQEEQREPDKSEINEEECYDSEAL 78 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCH------HHHHHHHHHHTT----THHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccch------hhhHHHHHhhhccCcchhhhhhhhhhhHHHH
Confidence 4589999999865332 34455556679999999999974321 1000000 0111110 00 11111 13
Q ss_pred HHHHHhhhhhccCCCeEEecCCCCCCCCcccccH--HHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccC-CC-
Q 008029 270 DGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITF--KSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDY-NS- 345 (580)
Q Consensus 270 d~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f--~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~-~~- 345 (580)
+.+++.+..+ .+|.+++|||||... ..| .+|....-.|.-- . -..-+.+.-|...++.+..+... ..
T Consensus 79 ~~ff~~L~~~--~~p~~~vPG~~Dap~----~~~lr~a~~~e~v~p~~~-~--vH~sf~~~~g~y~v~G~GGeI~~~~~~ 149 (255)
T PF14582_consen 79 DKFFRILGEL--GVPVFVVPGNMDAPE----RFFLREAYNAEIVTPHIH-N--VHESFFFWKGEYLVAGMGGEITDDQRE 149 (255)
T ss_dssp HHHHHHHHCC---SEEEEE--TTS-SH----HHHHHHHHHCCCC-TTEE-E---CTCEEEETTTEEEEEE-SEEESSS-B
T ss_pred HHHHHHHHhc--CCcEEEecCCCCchH----HHHHHHHhccceecccee-e--eeeeecccCCcEEEEecCccccCCCcc
Confidence 3555666554 899999999999741 111 1222222222100 0 00113334455888888765321 11
Q ss_pred -------cHHHHHHHHHHHHhccCCCCCeEEEEeCCCC-ccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCce
Q 008029 346 -------TGAQYAWLKEDLHKLDRTVTPWLAAAWHPPW-YNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYE 415 (580)
Q Consensus 346 -------~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~-y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~ye 415 (580)
.....+|..+.|..++ ..-+|+.+|.|+ +.....+.. .+.+.+++++|+.+++|+||+|.-.
T Consensus 150 ~~~~LrYP~weaey~lk~l~elk---~~r~IlLfhtpPd~~kg~~h~G-----S~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 150 EEFKLRYPAWEAEYSLKFLRELK---DYRKILLFHTPPDLHKGLIHVG-----SAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp CSSS-EEEHHHHHHHHGGGGGCT---SSEEEEEESS-BTBCTCTBTTS-----BHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred ccccccchHHHHHHHHHHHHhcc---cccEEEEEecCCccCCCccccc-----HHHHHHHHHhcCCcEEEecccccch
Confidence 2234455566666653 234788899998 433322222 2578899999999999999999643
No 47
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.78 E-value=1.7e-07 Score=102.37 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=107.3
Q ss_pred HHHHHHHHC--CCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhhccCCCeEEecCCCC
Q 008029 216 TTVDHLIQN--DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHE 293 (580)
Q Consensus 216 ~~l~~i~~~--~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD 293 (580)
.++++|.++ ++|+|+++||++-.+.|... .+.--.......+.|......+|++++.||||
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~~t-----------------~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe 261 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWAQT-----------------EEENLSMLSRLTSLLSEYFPDVPVYPALGNHE 261 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchhhh-----------------HHHHHHHHHHHHHHHHHhCCCCceeeecccCC
Confidence 456667654 48999999999976543110 11111122334556677778999999999999
Q ss_pred CCCCcc-------cc-----cHHHHHhhc--CCCCCC-CCCCCcceEEEE-eCcEEEEEEcCcccC----------CCcH
Q 008029 294 IEPQVA-------GI-----TFKSYLTRF--AVPSEE-SGSNSNFYYSFN-AGGVHFIMLGAYVDY----------NSTG 347 (580)
Q Consensus 294 ~~~~~~-------~~-----~f~~y~~~f--~~P~~~-~~~~~~~yYsfd-~G~v~fI~Ldt~~~~----------~~~~ 347 (580)
..+... .. .|..+...| -+|... .....+-||... .+|.++|+||+..-+ ....
T Consensus 262 ~~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~ 341 (577)
T KOG3770|consen 262 IHPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPI 341 (577)
T ss_pred CCcHhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCch
Confidence 874321 01 112222222 133321 112334555544 589999999985322 2467
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcC--CcEEEEccccCceeE
Q 008029 348 AQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYG--VDIVFSGHVHAYERM 417 (580)
Q Consensus 348 ~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~--VdlvlsGH~H~yeR~ 417 (580)
.|++|+..+|.++..++. -+-+++|.|+-... .. +.-...+-.++.++. +...|.||.|.-+-.
T Consensus 342 ~~lqWf~~~L~~ae~~Ge-kVhil~HIPpG~~~---c~--~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 342 DQLQWFVDQLQEAESAGE-KVHILGHIPPGDGV---CL--EGWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred HHhhHHHHHHHHHHhcCC-EEEEEEeeCCCCcc---hh--hhhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 889999999999864443 47788999965421 11 111234445555553 456799999986644
No 48
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.78 E-value=3.7e-07 Score=89.04 Aligned_cols=191 Identities=18% Similarity=0.263 Sum_probs=111.9
Q ss_pred CeEEEEEcccCCCCCh-HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhh
Q 008029 199 PHRIAVIGDLGLTSNS-STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFME 277 (580)
Q Consensus 199 ~~rfav~gD~g~~~~~-~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~ 277 (580)
.+|+++++|+|..... .+.++.+...++|+++.+||++|.... .+ ...-+.. + ++
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~-----~~-------------~~~~~~~---~---~e 58 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFG-----PK-------------EVAEELN---K---LE 58 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcC-----ch-------------HHHHhhh---H---HH
Confidence 5899999999987543 445555556799999999999954311 10 0000111 1 33
Q ss_pred hhc-cCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcc------cCCCcHH-H
Q 008029 278 PLT-SRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYV------DYNSTGA-Q 349 (580)
Q Consensus 278 ~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~------~~~~~~~-Q 349 (580)
.+. ..+|+++++||-|-. .... ........- .+ -..+.+++.|+.+.... .+...++ =
T Consensus 59 ~l~~~~~~v~avpGNcD~~-----~v~~-~l~~~~~~v------~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I 124 (226)
T COG2129 59 ALKELGIPVLAVPGNCDPP-----EVID-VLKNAGVNV------HG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEI 124 (226)
T ss_pred HHHhcCCeEEEEcCCCChH-----HHHH-HHHhccccc------cc--ceEEecCcEEEEecccCCCCCCCccccCHHHH
Confidence 333 579999999998853 1111 111121111 11 56778888888854311 1112233 3
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcch-hHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCC
Q 008029 350 YAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQE-FECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDAC 428 (580)
Q Consensus 350 ~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~ 428 (580)
+.-|++-+.+.+. +-.|+.+|.|+|........+ ...-...+.+++++.++.+.++||+|-+.-.-. -+
T Consensus 125 ~s~l~~~v~~~~~---~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~-------iG 194 (226)
T COG2129 125 YSKLKSLVKKADN---PVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDK-------IG 194 (226)
T ss_pred HHHHHHHHhcccC---cceEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccc-------cC
Confidence 4455555555431 113999999999875442222 112246788889999999999999997543321 23
Q ss_pred CcEEEEeCC
Q 008029 429 GPVYITVGD 437 (580)
Q Consensus 429 G~vyIv~G~ 437 (580)
.++-|..|.
T Consensus 195 ~TivVNPG~ 203 (226)
T COG2129 195 NTIVVNPGP 203 (226)
T ss_pred CeEEECCCC
Confidence 455665555
No 49
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.76 E-value=2.5e-07 Score=92.58 Aligned_cols=184 Identities=17% Similarity=0.197 Sum_probs=96.0
Q ss_pred EEEcccCCCCCh----HHHHHHHHH--CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhh
Q 008029 203 AVIGDLGLTSNS----STTVDHLIQ--NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFM 276 (580)
Q Consensus 203 av~gD~g~~~~~----~~~l~~i~~--~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l 276 (580)
++++|+|.+... ...++.+.+ .+||+|+++||+++. +... . . . ....+.+.+.+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~--~~~~--~------------~-~---~~~~~~~~~~l 61 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEA--WIGD--D------------D-P---STLARSVAQAI 61 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceecc--ccCC--C------------C-C---CHHHHHHHHHH
Confidence 689999987542 234555544 379999999999952 2110 0 0 0 01123444555
Q ss_pred hhhcc-CCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcH--------
Q 008029 277 EPLTS-RVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTG-------- 347 (580)
Q Consensus 277 ~~l~~-~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~-------- 347 (580)
+.+.. .+|+++++||||.... ..+.....+..- .....+..++-+++++-..... ..+
T Consensus 62 ~~L~~~~~~v~~v~GNHD~~~~------~~~~~~~gi~~l------~~~~~~~~~g~~ill~HGd~~~-~~d~~y~~~r~ 128 (231)
T TIGR01854 62 RQVSDQGVPCYFMHGNRDFLIG------KRFAREAGMTLL------PDPSVIDLYGQKVLLMHGDTLC-TDDTAYQAFRA 128 (231)
T ss_pred HHHHHCCCeEEEEcCCCchhhh------HHHHHHCCCEEE------CCCEEEEECCEEEEEEcCcccc-CCCHHHHHHHH
Confidence 55553 5899999999997421 112222111100 0112345555555554332111 111
Q ss_pred ----------------HHHHHHHHHHHhccCCC---CCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEE
Q 008029 348 ----------------AQYAWLKEDLHKLDRTV---TPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFS 408 (580)
Q Consensus 348 ----------------~Q~~WLe~~L~~~~r~~---~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~Vdlvls 408 (580)
....||.+.+.+..+++ .+ ..++.+ ....+++++.+++++++++
T Consensus 129 ~~r~~~~~~~~~~l~~~~r~~l~~~~~~~s~~~~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~~i~ 191 (231)
T TIGR01854 129 KVHQPWLQRLFLHLPLAVRVKLARKIRAESRADKQMKS-QDIMDV----------------NPAEVAAVMRRYGVDRLIH 191 (231)
T ss_pred HHhCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCc-chhhCC----------------CHHHHHHHHHHcCCCEEEE
Confidence 12333444443321110 00 011111 1245677888899999999
Q ss_pred ccccCceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 409 GHVHAYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 409 GH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
||+|.-... +..+ +..+..|++.|+...
T Consensus 192 GHtH~~~~~-~~~~---~~~~~~~~~lgdW~~ 219 (231)
T TIGR01854 192 GHTHRPAIH-PLQA---DGQPATRIVLGDWYR 219 (231)
T ss_pred CCccCccee-eccc---CCCccEEEEECCCcc
Confidence 999987644 3211 123568999998743
No 50
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.75 E-value=3.4e-08 Score=89.85 Aligned_cols=48 Identities=10% Similarity=-0.019 Sum_probs=31.2
Q ss_pred EEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCcee
Q 008029 368 LAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYER 416 (580)
Q Consensus 368 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR 416 (580)
.|++.|+|++....... ....-.+.+.+++.+++++++|+||+|....
T Consensus 58 ~Ilv~H~pp~~~~~~~~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~ 105 (129)
T cd07403 58 DILLTHAPPAGIGDGED-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYG 105 (129)
T ss_pred CEEEECCCCCcCcCccc-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcC
Confidence 56777877764332110 0001245777888899999999999997544
No 51
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.71 E-value=1.4e-07 Score=88.02 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=45.3
Q ss_pred CCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcEEEEeCC
Q 008029 363 TVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGD 437 (580)
Q Consensus 363 ~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~ 437 (580)
+...-.|||+|.|+.+..... ..+.+++++++|+.++.||.|.-.|-.+-+. +-.|+-|+.+.+
T Consensus 156 k~~~~fivM~HYPP~s~~~t~--------~~~sevlee~rv~~~lyGHlHgv~~p~~~~s---~v~Gi~y~Lvaa 219 (230)
T COG1768 156 KGVSKFIVMTHYPPFSDDGTP--------GPFSEVLEEGRVSKCLYGHLHGVPRPNIGFS---NVRGIEYMLVAA 219 (230)
T ss_pred cCcCeEEEEEecCCCCCCCCC--------cchHHHHhhcceeeEEeeeccCCCCCCCCcc---cccCceEEEEec
Confidence 344568999999998865432 2567788899999999999999877543222 234777765543
No 52
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.63 E-value=3.4e-07 Score=92.46 Aligned_cols=192 Identities=17% Similarity=0.136 Sum_probs=99.9
Q ss_pred eEEEEEcccCCCC-------Ch---HHHHHHHHHCCCC-EEEEcccccccccccccCCCCCcccccCCCCCccccccHHH
Q 008029 200 HRIAVIGDLGLTS-------NS---STTVDHLIQNDPS-LILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPR 268 (580)
Q Consensus 200 ~rfav~gD~g~~~-------~~---~~~l~~i~~~~pD-fvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~ 268 (580)
++|++++|+|... .. ...++++.+.+|| +++.+||++....... + ..
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~---------------------~-~~ 58 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST---------------------A-TK 58 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh---------------------c-cC
Confidence 4899999999653 11 3456666667788 7899999985432100 0 00
Q ss_pred HHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCC---C----C---CCCCCcceEEEEeCcEEE--EE
Q 008029 269 WDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPS---E----E---SGSNSNFYYSFNAGGVHF--IM 336 (580)
Q Consensus 269 wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~---~----~---~~~~~~~yYsfd~G~v~f--I~ 336 (580)
.....+.++.+ -.-++++||||+.... ..+........+|. + . .......|.-++.+++++ +.
T Consensus 59 ~~~~~~~l~~~---g~d~~~~GNHe~d~g~--~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG 133 (252)
T cd00845 59 GEANIELMNAL---GYDAVTIGNHEFDYGL--DALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIG 133 (252)
T ss_pred CcHHHHHHHhc---CCCEEeeccccccccH--HHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEE
Confidence 11223333332 2455778999985332 23444444433331 1 0 001123456677787554 44
Q ss_pred EcCcccCC----------CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEE
Q 008029 337 LGAYVDYN----------STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIV 406 (580)
Q Consensus 337 Ldt~~~~~----------~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~Vdlv 406 (580)
+....... ......+-+++..++. +.+...+|++.|.+.... .++...+ .+||++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vIvl~H~g~~~~------------~~la~~~--~giDlv 198 (252)
T cd00845 134 LTTPDTPTYTPLGWIIGLPFEDLAEAVAVAEELL-AEGADVIILLSHLGLDDD------------EELAEEV--PGIDVI 198 (252)
T ss_pred eccccceeecCCCcccCceecCHHHHHHHHHHHH-hCCCCEEEEEeccCccch------------HHHHhcC--CCccEE
Confidence 43321100 0112233343322222 245678999999875431 1121111 589999
Q ss_pred EEccccCceeEeeccccccCCCCcEEEEeCCCC
Q 008029 407 FSGHVHAYERMNRVYNYTLDACGPVYITVGDGG 439 (580)
Q Consensus 407 lsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG 439 (580)
|+||.|....... ..+++..+-+|+=|
T Consensus 199 lggH~H~~~~~~~------~~~~~~v~~~g~~~ 225 (252)
T cd00845 199 LGGHTHHLLEEPE------VVNGTLIVQAGKYG 225 (252)
T ss_pred EcCCcCcccCCCc------ccCCEEEEeCChhH
Confidence 9999998654311 12456666555433
No 53
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.60 E-value=1.4e-07 Score=91.15 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=24.5
Q ss_pred EEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEe
Q 008029 369 AAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMN 418 (580)
Q Consensus 369 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~ 418 (580)
|++.|.|.+- ...+.+++++||||+|.-++..
T Consensus 129 ilL~H~P~~~------------------~~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYK------------------IFLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEccccee------------------ccccCCCCEEEeCccCCCeEEE
Confidence 8899999654 1224578999999999877754
No 54
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.59 E-value=4.1e-07 Score=89.49 Aligned_cols=197 Identities=14% Similarity=0.189 Sum_probs=99.2
Q ss_pred EEEcccCCCCCh---HHHHHHHHH----CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHh
Q 008029 203 AVIGDLGLTSNS---STTVDHLIQ----NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRF 275 (580)
Q Consensus 203 av~gD~g~~~~~---~~~l~~i~~----~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~ 275 (580)
++++|+|.+... ......+.+ .++|.++++||+++. +... . ......+ ...+...
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~--~~~~--~-----------~~~~~~~---~~~~~~l 62 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDL--WFGD--D-----------EVVPPAA---HEVLAAL 62 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEE--EecC--C-----------CCCChHH---HHHHHHH
Confidence 478999987543 222333333 489999999999953 2110 0 0000111 1112344
Q ss_pred hhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHHHHH
Q 008029 276 MEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAWLKE 355 (580)
Q Consensus 276 l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~WLe~ 355 (580)
++.+....+++.++||||.... ..+..+..... .......+.+++.+++++-... ++.....+.|+..
T Consensus 63 ~~~~~~~~~v~~v~GNHD~~~~------~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~ 130 (217)
T cd07398 63 LRLADRGTRVYYVPGNHDFLLG------DFFAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRR 130 (217)
T ss_pred HHHHHCCCeEEEECCCchHHHH------hHHHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHH
Confidence 4445578999999999997421 11111111110 0111225677888888776532 2334445555554
Q ss_pred HHHhccC------CCCCeEEEEeCCCCccC------CCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeecccc
Q 008029 356 DLHKLDR------TVTPWLAAAWHPPWYNS------YSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNY 423 (580)
Q Consensus 356 ~L~~~~r------~~~pwvIv~~H~P~y~s------~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~ 423 (580)
.+..... ....|..-........+ ........+...+.+..++.+++++++++||+|......
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~----- 205 (217)
T cd07398 131 LGRNPYDQLLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHE----- 205 (217)
T ss_pred HhCcHHHHHHHhcchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEE-----
Confidence 3221000 00000000000000000 000011122345667778889999999999999876543
Q ss_pred ccCCCCcEEEEeCC
Q 008029 424 TLDACGPVYITVGD 437 (580)
Q Consensus 424 ~~~~~G~vyIv~G~ 437 (580)
..+..|+.+|+
T Consensus 206 ---~~~~~~~n~G~ 216 (217)
T cd07398 206 ---LDGKLYINLGD 216 (217)
T ss_pred ---ECCEEEEECCC
Confidence 23778888886
No 55
>PRK09453 phosphodiesterase; Provisional
Probab=98.56 E-value=1.1e-06 Score=84.56 Aligned_cols=75 Identities=15% Similarity=0.301 Sum_probs=46.8
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhh
Q 008029 200 HRIAVIGDLGLTSNS-STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEP 278 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~ 278 (580)
+|++++||+|..... .++++.+.+.++|.++++||+++.... .+..+.|+ .+...+.++.
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~-----------------~~~~~~~~--~~~~~~~l~~ 61 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPR-----------------NPLPEGYA--PKKVAELLNA 61 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcC-----------------CCCccccC--HHHHHHHHHh
Confidence 589999999975432 334555556799999999999853110 01111221 1223333433
Q ss_pred hccCCCeEEecCCCCCC
Q 008029 279 LTSRVPMMVIEGNHEIE 295 (580)
Q Consensus 279 l~~~vP~~~v~GNHD~~ 295 (580)
+ ..+++.+.||||..
T Consensus 62 ~--~~~v~~V~GNhD~~ 76 (182)
T PRK09453 62 Y--ADKIIAVRGNCDSE 76 (182)
T ss_pred c--CCceEEEccCCcch
Confidence 3 46899999999963
No 56
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.53 E-value=2.9e-06 Score=87.19 Aligned_cols=188 Identities=15% Similarity=0.106 Sum_probs=95.8
Q ss_pred eEEEEEcccCCCCC-----------------hHHHHHHHHHCCCCEEEE-cccccccccccccCCCCCcccccCCCCCcc
Q 008029 200 HRIAVIGDLGLTSN-----------------SSTTVDHLIQNDPSLILM-VGDLTYANQYLTTGGKAASCYSCAFPDAPI 261 (580)
Q Consensus 200 ~rfav~gD~g~~~~-----------------~~~~l~~i~~~~pDfvl~-~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~ 261 (580)
++|++.+|+|.... ....++++.+.+|+.+++ +||++.......- ....
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~--------~~~~----- 67 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADY--------YAKI----- 67 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHH--------hhhc-----
Confidence 47888888886421 123455666667887776 9999864321000 0000
Q ss_pred ccccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCC-------C-CCCCCcceEEEEeC-cE
Q 008029 262 RETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSE-------E-SGSNSNFYYSFNAG-GV 332 (580)
Q Consensus 262 ~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~-------~-~~~~~~~yYsfd~G-~v 332 (580)
+ ........+.|+.+ ... +.++||||+... ...+........+|.- . .......|.-++.+ ++
T Consensus 68 -~--~~~~~~~~~~ln~~--g~d-~~~lGNHe~d~g--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~ 139 (277)
T cd07410 68 -E--DGDPHPMIAAMNAL--GYD-AGTLGNHEFNYG--LDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGV 139 (277)
T ss_pred -c--cCCCChHHHHHHhc--CCC-EEeecccCcccC--HHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCC
Confidence 0 00011233444444 333 566799998532 2334444444444321 0 01122456677888 76
Q ss_pred EEEEEcCcccC---------------CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHH
Q 008029 333 HFIMLGAYVDY---------------NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEAL 397 (580)
Q Consensus 333 ~fI~Ldt~~~~---------------~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~L 397 (580)
++-++.-.... ....+..++..+.|++ .+...+|+++|............ .+.....|
T Consensus 140 kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~~~----~~~~~~~l 212 (277)
T cd07410 140 KVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEESLT----GENAAYEL 212 (277)
T ss_pred EEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCcccccC----CccHHHHH
Confidence 65554421110 0112234444444443 45778999999886543211000 11222344
Q ss_pred HHh-cCCcEEEEccccCce
Q 008029 398 LYQ-YGVDIVFSGHVHAYE 415 (580)
Q Consensus 398 l~k-y~VdlvlsGH~H~ye 415 (580)
.++ .+||++|.||.|...
T Consensus 213 a~~~~~vD~IlgGHsH~~~ 231 (277)
T cd07410 213 AEEVPGIDAILTGHQHRRF 231 (277)
T ss_pred HhcCCCCcEEEeCCCcccc
Confidence 444 589999999999754
No 57
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.52 E-value=1.9e-06 Score=87.61 Aligned_cols=191 Identities=19% Similarity=0.176 Sum_probs=101.4
Q ss_pred eEEEEEcccCCCC-----------ChHHHHHHHHHCCCC-EEEEcccccccccccccCCCCCcccccCCCCCccccccHH
Q 008029 200 HRIAVIGDLGLTS-----------NSSTTVDHLIQNDPS-LILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQP 267 (580)
Q Consensus 200 ~rfav~gD~g~~~-----------~~~~~l~~i~~~~pD-fvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~ 267 (580)
++|+.+.|+|.-. .....++++.+.+|+ +++.+||++....... + .
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~---------------------~-~ 58 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLST---------------------A-T 58 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchh---------------------h-c
Confidence 4678888887311 113455666666788 9999999985321100 0 0
Q ss_pred HHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCC------CC----CCCcceEEEEeCcEEE--E
Q 008029 268 RWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEE------SG----SNSNFYYSFNAGGVHF--I 335 (580)
Q Consensus 268 ~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~------~~----~~~~~yYsfd~G~v~f--I 335 (580)
+.+...+.|+.+ .. -+.++||||+... ...+........+|.-. .+ ..-+.|.-++.+++++ +
T Consensus 59 ~g~~~~~~l~~l--~~-d~~~~GNHefd~g--~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgvi 133 (257)
T cd07406 59 KGKQMVPVLNAL--GV-DLACFGNHEFDFG--EDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLL 133 (257)
T ss_pred CCccHHHHHHhc--CC-cEEeecccccccC--HHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEE
Confidence 111223444433 22 3668999998532 23344433333332210 00 1124678888887654 4
Q ss_pred EEcCcccC---------CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHh-cCCcE
Q 008029 336 MLGAYVDY---------NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQ-YGVDI 405 (580)
Q Consensus 336 ~Ldt~~~~---------~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~k-y~Vdl 405 (580)
.+.+.... -....-.+.+++.+++..+.+...+|++.|-+.... + ++.++ .+||+
T Consensus 134 G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d-----------~----~la~~~~~iD~ 198 (257)
T cd07406 134 GLVEEEWLETLTIDPEYVRYRDYVETARELVDELREQGADLIIALTHMRLPND-----------K----RLAREVPEIDL 198 (257)
T ss_pred EEecccccccccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchhh-----------H----HHHHhCCCCce
Confidence 44432111 001233444555444443456788999999874211 1 22333 48999
Q ss_pred EEEccccCceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 406 VFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 406 vlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
+|+||.|..... ..+++..+-+|+-|.
T Consensus 199 IlgGH~H~~~~~--------~~~~t~vv~~g~~g~ 225 (257)
T cd07406 199 ILGGHDHEYILV--------QVGGTPIVKSGSDFR 225 (257)
T ss_pred EEecccceeEee--------eECCEEEEeCCcCcc
Confidence 999999986622 124566666666554
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.50 E-value=1.6e-06 Score=93.28 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=31.2
Q ss_pred CeEEEEEcccCCCCC---------h----HHHHHHHHHCCCCEEEEcccccccc
Q 008029 199 PHRIAVIGDLGLTSN---------S----STTVDHLIQNDPSLILMVGDLTYAN 239 (580)
Q Consensus 199 ~~rfav~gD~g~~~~---------~----~~~l~~i~~~~pDfvl~~GDl~Y~d 239 (580)
.+||++++|+|.+.. . .++++.+.+.++|+||++||+.+..
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~ 56 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHEN 56 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCC
Confidence 589999999998742 1 2344455568999999999999653
No 59
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.6e-06 Score=93.45 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=51.0
Q ss_pred eEEEEEcccCCCC-C-------------hHHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCcccccc
Q 008029 200 HRIAVIGDLGLTS-N-------------SSTTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETY 265 (580)
Q Consensus 200 ~rfav~gD~g~~~-~-------------~~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y 265 (580)
+||++.+|+|.+. . ....++.+.+.++||||++||+.+... |..+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~-------------------Ps~~-- 59 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNN-------------------PSPR-- 59 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCC-------------------CCHH--
Confidence 5899999999982 1 123455566789999999999996531 1111
Q ss_pred HHHHHHHHHhhhhhc-cCCCeEEecCCCCCCC
Q 008029 266 QPRWDGWGRFMEPLT-SRVPMMVIEGNHEIEP 296 (580)
Q Consensus 266 ~~~wd~~~~~l~~l~-~~vP~~~v~GNHD~~~ 296 (580)
.-..+.+.++.+. .++|++++.||||...
T Consensus 60 --a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 60 --ALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred --HHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 1123444555543 5899999999999864
No 60
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.38 E-value=1.7e-05 Score=75.67 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=29.8
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHHCCCCEEEEccccccc
Q 008029 200 HRIAVIGDLGLTSNS-STTVDHLIQNDPSLILMVGDLTYA 238 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-~~~l~~i~~~~pDfvl~~GDl~Y~ 238 (580)
++|++++|+|..... ....+.....++|+|+|+||.+..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~ 41 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSP 41 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCc
Confidence 689999999987532 334444456799999999999954
No 61
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.35 E-value=1.1e-05 Score=82.06 Aligned_cols=191 Identities=18% Similarity=0.242 Sum_probs=99.8
Q ss_pred EEEEcccCCCCChHHH---HHHHHH---CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHh
Q 008029 202 IAVIGDLGLTSNSSTT---VDHLIQ---NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRF 275 (580)
Q Consensus 202 fav~gD~g~~~~~~~~---l~~i~~---~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~ 275 (580)
|+|.||.|.. .... ++.+.+ .++|++|++||+.-... . ...++.+ ....| ..+..|.+.
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~--~---~d~~~~~-------~p~k~-~~~~~f~~~ 65 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAVRN--E---ADLKCMA-------VPPKY-RKMGDFYKY 65 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCC--c---chhhhhc-------cchhh-hhhhhHHHH
Confidence 5899999984 3333 333332 36999999999953210 0 0001100 11122 124455555
Q ss_pred hhhhc-cCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceE-----EEEeCcEEEEEEcCccc---CC--
Q 008029 276 MEPLT-SRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYY-----SFNAGGVHFIMLGAYVD---YN-- 344 (580)
Q Consensus 276 l~~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yY-----sfd~G~v~fI~Ldt~~~---~~-- 344 (580)
++.+. ..+|++++.||||... .+.+ ++.... ...+.+| .+++++++|..|..... +.
T Consensus 66 ~~g~~~~p~~t~fi~GNHE~~~--------~l~~---l~~gg~-v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~ 133 (262)
T cd00844 66 YSGEKKAPILTIFIGGNHEASN--------YLWE---LPYGGW-VAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKG 133 (262)
T ss_pred hcCCccCCeeEEEECCCCCCHH--------HHHh---hcCCCe-ecCcEEEecCCCEEEECCeEEEEecccccccccccc
Confidence 54332 5778899999999521 1111 111000 0123332 45678999999986321 11
Q ss_pred ------CcHHHHHHHH----HHHHhccCCCCCeEEEEeCCCCccCCCCCcch------------h---HHHHHHHHHHHH
Q 008029 345 ------STGAQYAWLK----EDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQE------------F---ECMRQEMEALLY 399 (580)
Q Consensus 345 ------~~~~Q~~WLe----~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~------------~---~~~r~~l~~Ll~ 399 (580)
....+++.+. .++.+......+--|+++|.|++......... . ..-...+..|++
T Consensus 134 ~~~~~~~t~~~~rs~y~~r~~~~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~ 213 (262)
T cd00844 134 HFERPPYSEDTKRSAYHVRNIEVFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLK 213 (262)
T ss_pred cccCCCCCHHHHHHhhhhhHHHHHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHH
Confidence 1233333211 11111111111336899999987653211000 0 001246778999
Q ss_pred hcCCcEEEEccccC-ceeEee
Q 008029 400 QYGVDIVFSGHVHA-YERMNR 419 (580)
Q Consensus 400 ky~VdlvlsGH~H~-yeR~~p 419 (580)
+.+....|+||.|. |++..|
T Consensus 214 ~lkPryhf~gH~H~~f~~~~~ 234 (262)
T cd00844 214 HLKPRYWFSAHLHVKFAALVP 234 (262)
T ss_pred HhCCCEEEEecCCcccceecC
Confidence 99999999999998 777654
No 62
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.30 E-value=1.2e-05 Score=82.16 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=90.8
Q ss_pred HHHHHHHHC-CCCEE-EEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhhccCCCeEEecCCCC
Q 008029 216 TTVDHLIQN-DPSLI-LMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHE 293 (580)
Q Consensus 216 ~~l~~i~~~-~pDfv-l~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD 293 (580)
..++++.+. ++|.+ +.+||+....... +..+.....+.|+. +++.++.||||
T Consensus 40 ~~v~~~~~~~~~~~l~l~~GD~~~gs~~~----------------------~~~~g~~~~~~l~~----~g~da~~GNHe 93 (264)
T cd07411 40 TLIKRIRAERNPNTLLLDGGDTWQGSGEA----------------------LYTRGQAMVDALNA----LGVDAMVGHWE 93 (264)
T ss_pred HHHHHHHHhcCCCeEEEeCCCccCCChHH----------------------hhcCChhHHHHHHh----hCCeEEecccc
Confidence 345666566 89977 5799999542110 00111222333333 45555559999
Q ss_pred CCCCcccccHHHHHhhcCCCCCCC-------C-CCCcceEEEEeCcEE--EEEEcCcccCC----------CcHHHHHHH
Q 008029 294 IEPQVAGITFKSYLTRFAVPSEES-------G-SNSNFYYSFNAGGVH--FIMLGAYVDYN----------STGAQYAWL 353 (580)
Q Consensus 294 ~~~~~~~~~f~~y~~~f~~P~~~~-------~-~~~~~yYsfd~G~v~--fI~Ldt~~~~~----------~~~~Q~~WL 353 (580)
+... ...+....+.+.+|.-.+ + .....|.-++.++++ +|.+.+..... ......+.+
T Consensus 94 fd~g--~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (264)
T cd07411 94 FTYG--PERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEEL 171 (264)
T ss_pred cccC--HHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHH
Confidence 8632 233444444444442110 0 112236667888755 55554421100 012334555
Q ss_pred HHHHHhcc-CCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHh-cCCcEEEEccccCceeEeeccccccCCCCcE
Q 008029 354 KEDLHKLD-RTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQ-YGVDIVFSGHVHAYERMNRVYNYTLDACGPV 431 (580)
Q Consensus 354 e~~L~~~~-r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~k-y~VdlvlsGH~H~yeR~~pv~n~~~~~~G~v 431 (580)
++.+++.. ..+...+|++.|-+.... + .+.++ .+||++|.||.|..... |. ..-++++
T Consensus 172 ~~~~~~~~~~~~~D~iI~l~H~g~~~~-----------~----~la~~~~~iDlilgGH~H~~~~~-~~----~~~~~t~ 231 (264)
T cd07411 172 QEVVVKLRREEGVDVVVLLSHNGLPVD-----------V----ELAERVPGIDVILSGHTHERTPK-PI----IAGGGTL 231 (264)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCchhh-----------H----HHHhcCCCCcEEEeCcccccccC-cc----cccCCEE
Confidence 55544332 245678999999874311 1 12223 47999999999964321 11 0124666
Q ss_pred EEEeCCCCc
Q 008029 432 YITVGDGGN 440 (580)
Q Consensus 432 yIv~G~gG~ 440 (580)
.+-+|.-|.
T Consensus 232 v~~~g~~~~ 240 (264)
T cd07411 232 VVEAGSHGK 240 (264)
T ss_pred EEEcCcccc
Confidence 666666555
No 63
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.24 E-value=2.3e-05 Score=81.11 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=47.3
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHh--cCCcEEEEccccCceeEeeccccccCC
Q 008029 350 YAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQ--YGVDIVFSGHVHAYERMNRVYNYTLDA 427 (580)
Q Consensus 350 ~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~k--y~VdlvlsGH~H~yeR~~pv~n~~~~~ 427 (580)
.+-+++.+++.+..+...+|++.|........... .+.......+++.+ .+||++|.||.|..... +. ...
T Consensus 177 ~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~--~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~-~~----~~~ 249 (288)
T cd07412 177 VEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDT--CSAASGPIADIVNRLDPDVDVVFAGHTHQAYNC-TV----PAG 249 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcc--ccccChhHHHHHhhcCCCCCEEEeCccCccccc-cc----cCc
Confidence 34455555554434677899999987653221100 00011122334444 37999999999986532 10 023
Q ss_pred CCcEEEEeCCCCcc
Q 008029 428 CGPVYITVGDGGNI 441 (580)
Q Consensus 428 ~G~vyIv~G~gG~~ 441 (580)
+++..+-.|+-|..
T Consensus 250 ~~~~v~q~g~~g~~ 263 (288)
T cd07412 250 NPRLVTQAGSYGKA 263 (288)
T ss_pred CCEEEEecChhhce
Confidence 56777777766653
No 64
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.23 E-value=1.6e-05 Score=80.77 Aligned_cols=181 Identities=19% Similarity=0.144 Sum_probs=92.8
Q ss_pred eEEEEEcccCCCCC--------h---HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHH
Q 008029 200 HRIAVIGDLGLTSN--------S---STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPR 268 (580)
Q Consensus 200 ~rfav~gD~g~~~~--------~---~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~ 268 (580)
++|+.++|+|.... . ...++++.+.++++++.+||++..... .. ...
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-~~---------------------~~~ 58 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-SD---------------------LDK 58 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-hh---------------------hcC
Confidence 47899999996421 1 233444444457899999999853211 00 001
Q ss_pred HHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCC-------CC-CCcceEEEEeC-cE--EEEEE
Q 008029 269 WDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEES-------GS-NSNFYYSFNAG-GV--HFIML 337 (580)
Q Consensus 269 wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~-------~~-~~~~yYsfd~G-~v--~fI~L 337 (580)
.....+.|..+ ..-+ .++||||+.. +...+..+...+.+|.-.. +. .-..|.-++.+ ++ -|+.+
T Consensus 59 g~~~~~~ln~~--g~d~-~~~GNHefd~--G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~ 133 (257)
T cd07408 59 GETIIKIMNAV--GYDA-VTPGNHEFDY--GLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGL 133 (257)
T ss_pred CcHHHHHHHhc--CCcE-EccccccccC--CHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEee
Confidence 12223444433 3444 4679999853 2334455555554443110 10 11235555777 54 45555
Q ss_pred cCccc-C----C--C---cHHHHHHHHHH-HHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHh-cCCcE
Q 008029 338 GAYVD-Y----N--S---TGAQYAWLKED-LHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQ-YGVDI 405 (580)
Q Consensus 338 dt~~~-~----~--~---~~~Q~~WLe~~-L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~k-y~Vdl 405 (580)
-+... . . . ...-.+-+++. ..+..+.+...+|++.|.+....... +. ... +..+ .+||+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~-~~-----~~~---la~~~~giDv 204 (257)
T cd07408 134 TTPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP-WT-----STE---LAANVTGIDL 204 (257)
T ss_pred cCcCcccccCccccCCcEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC-cc-----HHH---HHHhCCCceE
Confidence 44210 0 0 0 01122333333 22222346778999999886543211 11 112 2223 48999
Q ss_pred EEEccccCcee
Q 008029 406 VFSGHVHAYER 416 (580)
Q Consensus 406 vlsGH~H~yeR 416 (580)
+|.||.|....
T Consensus 205 IigGH~H~~~~ 215 (257)
T cd07408 205 IIDGHSHTTIE 215 (257)
T ss_pred EEeCCCccccc
Confidence 99999997643
No 65
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.22 E-value=5.3e-05 Score=76.82 Aligned_cols=191 Identities=16% Similarity=0.204 Sum_probs=103.4
Q ss_pred EEEEEcccCCCCChH---HHHHHHH-HCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhh
Q 008029 201 RIAVIGDLGLTSNSS---TTVDHLI-QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFM 276 (580)
Q Consensus 201 rfav~gD~g~~~~~~---~~l~~i~-~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l 276 (580)
||+++||.=...... ..+.++. +.++||++..||++-.. .+. . ....+.|
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg-------~gl------------~-------~~~~~~L 54 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGG-------KGI------------T-------PKIAKEL 54 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCC-------CCC------------C-------HHHHHHH
Confidence 588999985543333 3344444 35799999999998431 110 0 1122333
Q ss_pred hhhccCCCeEEecCCCCCCCCcccccHHHHHhhcC---CCCCCC-CCCCcceEEEEeCcEEEEEEc--CcccCCCcHHHH
Q 008029 277 EPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFA---VPSEES-GSNSNFYYSFNAGGVHFIMLG--AYVDYNSTGAQY 350 (580)
Q Consensus 277 ~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~---~P~~~~-~~~~~~yYsfd~G~v~fI~Ld--t~~~~~~~~~Q~ 350 (580)
..+ .+-+ ++.|||++... ....+..... .|.+-+ ......|+-++.+++++-+++ +.........-+
T Consensus 55 ~~~--G~D~-iTlGNH~fD~g----el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~ 127 (255)
T cd07382 55 LSA--GVDV-ITMGNHTWDKK----EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPF 127 (255)
T ss_pred Hhc--CCCE-EEecccccCcc----hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHH
Confidence 333 3444 45599998643 2334433331 222211 112345777888876655544 222211222234
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCc
Q 008029 351 AWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGP 430 (580)
Q Consensus 351 ~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~ 430 (580)
+-+++.+++.+. +...+||.+|.-.. .+ +.++.. ..+-+||+++.||+|...-- ..+-|+|+
T Consensus 128 ~~~~~~v~~lk~-~~D~IIV~~H~g~t-------sE----k~ala~-~ldg~VdvIvGtHTHv~t~d-----~~il~~gT 189 (255)
T cd07382 128 RAADELLEELKE-EADIIFVDFHAEAT-------SE----KIALGW-YLDGRVSAVVGTHTHVQTAD-----ERILPGGT 189 (255)
T ss_pred HHHHHHHHHHhc-CCCEEEEEECCCCC-------HH----HHHHHH-hCCCCceEEEeCCCCccCCc-----cEEeeCCe
Confidence 446666666543 56789999998421 11 122332 22346999999999974222 12236899
Q ss_pred EEEEe-CCCCccc
Q 008029 431 VYITV-GDGGNIE 442 (580)
Q Consensus 431 vyIv~-G~gG~~e 442 (580)
.||+- |.-|...
T Consensus 190 a~itd~Gm~G~~~ 202 (255)
T cd07382 190 AYITDVGMTGPYD 202 (255)
T ss_pred EEEecCccccCCC
Confidence 89864 6666654
No 66
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.14 E-value=3.9e-05 Score=79.14 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=83.4
Q ss_pred HHHHHHHCCCC-EEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhhhccCCCeEEecCCCCCC
Q 008029 217 TVDHLIQNDPS-LILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIE 295 (580)
Q Consensus 217 ~l~~i~~~~pD-fvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 295 (580)
.++++.+.+++ +++.+||+....... .. .+.....+.|+.+ ..- +.++||||+.
T Consensus 40 ~v~~~r~~~~~~l~ld~GD~~~gs~~~--------------------~~--~~g~~~~~~ln~~--g~D-~~~lGNHefd 94 (281)
T cd07409 40 LVKELRAENPNVLFLNAGDAFQGTLWY--------------------TL--YKGNADAEFMNLL--GYD-AMTLGNHEFD 94 (281)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCcchh--------------------hh--cCChHHHHHHHhc--CCC-EEEecccccc
Confidence 45555555677 566699998542110 00 0112223444443 344 4457999986
Q ss_pred CCcccccHHHHHhhcCCCCCCC-----C------CCCcceEEEEeCcEEE--EEEcCcccC---C-----CcHHHHHHHH
Q 008029 296 PQVAGITFKSYLTRFAVPSEES-----G------SNSNFYYSFNAGGVHF--IMLGAYVDY---N-----STGAQYAWLK 354 (580)
Q Consensus 296 ~~~~~~~f~~y~~~f~~P~~~~-----~------~~~~~yYsfd~G~v~f--I~Ldt~~~~---~-----~~~~Q~~WLe 354 (580)
.. ...+..+..+..+|.-.. . ..-..|.-++.+++++ |.+-+.... . ......+.++
T Consensus 95 ~G--~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~ 172 (281)
T cd07409 95 DG--VEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQ 172 (281)
T ss_pred CC--HHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHH
Confidence 43 233444444444432110 0 1123466778887554 444332110 0 1123345677
Q ss_pred HHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHh-cCCcEEEEccccCce
Q 008029 355 EDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQ-YGVDIVFSGHVHAYE 415 (580)
Q Consensus 355 ~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~k-y~VdlvlsGH~H~ye 415 (580)
+.+++.+..+...+|++.|-.... . . .+.++ .+||+++.||.|...
T Consensus 173 ~~v~~lr~~~~D~II~l~H~G~~~-----------d-~---~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 173 KEADKLKAQGVNKIIALSHSGYEV-----------D-K---EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred HHHHHHHhcCCCEEEEEeccCchh-----------H-H---HHHHcCCCCcEEEeCCcCccc
Confidence 766666545677899999986321 0 1 22233 489999999999853
No 67
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.12 E-value=3.3e-05 Score=85.96 Aligned_cols=204 Identities=18% Similarity=0.209 Sum_probs=104.2
Q ss_pred CCeEEEEEcccCCCCCh------HHHHHHHH---------HCCCCEEEEcccccccccccccCCCCCcccccCCCCCccc
Q 008029 198 YPHRIAVIGDLGLTSNS------STTVDHLI---------QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIR 262 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~~------~~~l~~i~---------~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~ 262 (580)
..+++++++|+|.+... ...++.+. ..+++.++++||++...+.... .. ......
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~--~~--------~~~~~~ 311 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPG--QE--------EELEIV 311 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCcc--ch--------hhccch
Confidence 36899999999987542 23344444 5579999999999964211000 00 000001
Q ss_pred cccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCccc--ccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCc
Q 008029 263 ETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAG--ITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAY 340 (580)
Q Consensus 263 e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~--~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~ 340 (580)
+.+ .+++.+.++++.+...+|+++++||||....... .....|...+..+. ..-..+ -+.+.+++.++++....
T Consensus 312 ~~~-~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~--v~~lsN-P~~i~l~G~~iLl~HG~ 387 (504)
T PRK04036 312 DIY-EQYEAAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHN--VTFVSN-PALVNLHGVDVLIYHGR 387 (504)
T ss_pred hhH-HHHHHHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCC--eEEecC-CeEEEECCEEEEEECCC
Confidence 111 2234556677777788999999999997532111 11122322221110 000112 23577788888776542
Q ss_pred c-----cC---CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEcccc
Q 008029 341 V-----DY---NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVH 412 (580)
Q Consensus 341 ~-----~~---~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H 412 (580)
. .+ .....-.+.|++.|... .-+| ..-.+.|.|..... + +.-+.-.|+++.||.|
T Consensus 388 ~idDl~~~i~~~s~~~p~~~m~~~l~~r--HlaP--t~p~~~~~~p~~~D-~------------lvi~~~Pdv~~~GH~H 450 (504)
T PRK04036 388 SIDDVISLIPGASYEKPGKAMEELLKRR--HLAP--IYGGRTPIAPEKED-Y------------LVIDEVPDIFHTGHVH 450 (504)
T ss_pred CHHHHHhhcccccccCHHHHHHHHHHhc--ccCC--CCCCCEEeCcCCCC-C------------EEEecCCCEEEeCCCC
Confidence 1 11 01123345666666541 1111 00011222221110 0 1111235899999999
Q ss_pred CceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 413 AYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 413 ~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
.+.... -.|+.+|.+|+.-.
T Consensus 451 ~~~~~~--------~~g~~~IN~gsf~~ 470 (504)
T PRK04036 451 INGYGK--------YRGVLLINSGTWQA 470 (504)
T ss_pred ccceEE--------ECCEEEEECCcccc
Confidence 976542 35788888887443
No 68
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.11 E-value=0.00024 Score=73.32 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=103.1
Q ss_pred CeEEEEEcccCCCCC--------------hHHHHHHHH----HCCCC-EEEEcccccccccccccCCCCCcccccCCCCC
Q 008029 199 PHRIAVIGDLGLTSN--------------SSTTVDHLI----QNDPS-LILMVGDLTYANQYLTTGGKAASCYSCAFPDA 259 (580)
Q Consensus 199 ~~rfav~gD~g~~~~--------------~~~~l~~i~----~~~pD-fvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~ 259 (580)
+++|+..+|+|.... ..+.++++. +.+++ +++.+||......+
T Consensus 5 ~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~------------------ 66 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGL------------------ 66 (282)
T ss_pred eEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeec------------------
Confidence 589999999996421 022233332 23555 67889999954311
Q ss_pred ccccccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCccc-ccHHHHHhhcCCCCC--------CCCC---CCcceEEE
Q 008029 260 PIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAG-ITFKSYLTRFAVPSE--------ESGS---NSNFYYSF 327 (580)
Q Consensus 260 p~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~-~~f~~y~~~f~~P~~--------~~~~---~~~~yYsf 327 (580)
...+..++....+.|+.+. -=.+++||||+...... ..+..+.....+|.- +.+. ....|.-+
T Consensus 67 --~~~~~~~g~~~~~~mN~mg---yDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~ 141 (282)
T cd07407 67 --SDASPPPGSYSNPIFRMMP---YDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKF 141 (282)
T ss_pred --eeeecCCChHHHHHHHhcC---CcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEE
Confidence 1111112333344554431 12567999999532211 122223333333321 0001 11236666
Q ss_pred EeC-cEE--EEEEcCccc-------CCC--cHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHH
Q 008029 328 NAG-GVH--FIMLGAYVD-------YNS--TGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEME 395 (580)
Q Consensus 328 d~G-~v~--fI~Ldt~~~-------~~~--~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~ 395 (580)
+.+ +++ +|.+-+... +.. ...+.+|+.+.|++ .+...+|++.|....... +. .+...
T Consensus 142 ~~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~~---~~~~~ 210 (282)
T cd07407 142 TTKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----EF---KVLHD 210 (282)
T ss_pred EcCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----cH---HHHHH
Confidence 765 655 555533211 011 12223487777764 356789999998764331 11 11112
Q ss_pred HHHHhc-CCc-EEEEccccCceeEeeccccccCCCCcEEEEeCCCCcccc
Q 008029 396 ALLYQY-GVD-IVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGNIEQ 443 (580)
Q Consensus 396 ~Ll~ky-~Vd-lvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~~e~ 443 (580)
.+.++. ++| ++|.||+|..... ++ .+|+..+-.|.-|..-+
T Consensus 211 ~la~~~~~id~~Ii~GHsH~~~~~-~~------~~~~~ivq~G~~g~~lg 253 (282)
T cd07407 211 AIRKIFPDTPIQFLGGHSHVRDFT-QY------DSSSTGLESGRYLETVG 253 (282)
T ss_pred HHHHhCCCCCEEEEeCCcccccce-ec------cCcEEEEeccchhhceE
Confidence 233444 577 7999999975332 11 24666666677665433
No 69
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=4.4e-05 Score=75.37 Aligned_cols=189 Identities=18% Similarity=0.254 Sum_probs=97.6
Q ss_pred EEcccCCCCChHHH---H-HHHHHC--CCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhh
Q 008029 204 VIGDLGLTSNSSTT---V-DHLIQN--DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFME 277 (580)
Q Consensus 204 v~gD~g~~~~~~~~---l-~~i~~~--~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~ 277 (580)
+++|+|.+...... + +-+... +.|.+.++||++. .|.-. +.+.+.-++..+.+.
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd--~w~g~------------------~~~~~~~~~V~~~l~ 61 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFD--GWIGD------------------DEPPQLHRQVAQKLL 61 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhh--hhhcC------------------CcccHHHHHHHHHHH
Confidence 68999998554322 2 223333 4499999999994 34211 001112223333343
Q ss_pred hhc-cCCCeEEecCCCCCCCCcccccHHHHHhhcC-CCCCCCCCCCcceEEEEeCcEEEEEEcCcccCCCcHHHHHHHHH
Q 008029 278 PLT-SRVPMMVIEGNHEIEPQVAGITFKSYLTRFA-VPSEESGSNSNFYYSFNAGGVHFIMLGAYVDYNSTGAQYAWLKE 355 (580)
Q Consensus 278 ~l~-~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~-~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~~~~~~~~Q~~WLe~ 355 (580)
.+. ..+|++.++||||..- ...+...+. +- ..+.+--+++-|-+++.+-.-. ......++.|+..
T Consensus 62 ~~a~~G~~v~~i~GN~Dfll------~~~f~~~~g~~~------l~~~~~~~~l~g~~~Ll~HGD~-f~t~~~~y~~~r~ 128 (237)
T COG2908 62 RLARKGTRVYYIHGNHDFLL------GKRFAQEAGGMT------LLPDPIVLDLYGKRILLAHGDT-FCTDDRAYQWFRY 128 (237)
T ss_pred HHHhcCCeEEEecCchHHHH------HHHHHhhcCceE------EcCcceeeeecCcEEEEEeCCc-ccchHHHHHHHHH
Confidence 443 5699999999999631 122333332 10 0112233444444555543311 2233455555544
Q ss_pred HHHhccCCCCCeEE-EEeCCCCc-----------cC--CCCCcch----hHHHHHHHHHHHHhcCCcEEEEccccCceeE
Q 008029 356 DLHKLDRTVTPWLA-AAWHPPWY-----------NS--YSSHYQE----FECMRQEMEALLYQYGVDIVFSGHVHAYERM 417 (580)
Q Consensus 356 ~L~~~~r~~~pwvI-v~~H~P~y-----------~s--~~~~~~~----~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~ 417 (580)
.... +|.. ++.+.|.. .+ .....+. -+.+.+...+.+++++||.+++||+|.-.-.
T Consensus 129 ~~~~------~~~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~ 202 (237)
T COG2908 129 KVHW------AWLQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIH 202 (237)
T ss_pred Hccc------HHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhc
Confidence 3221 1111 11122211 11 0000001 1223567778899999999999999975543
Q ss_pred eeccccccCCCCcEEEEeCCCC
Q 008029 418 NRVYNYTLDACGPVYITVGDGG 439 (580)
Q Consensus 418 ~pv~n~~~~~~G~vyIv~G~gG 439 (580)
+-.+..||+.|+..
T Consensus 203 --------~i~~~~yi~lGdW~ 216 (237)
T COG2908 203 --------NIPGITYINLGDWV 216 (237)
T ss_pred --------cCCCceEEecCcch
Confidence 24569999999988
No 70
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.10 E-value=0.00021 Score=72.77 Aligned_cols=193 Identities=18% Similarity=0.187 Sum_probs=106.0
Q ss_pred eEEEEEcccCCCCCh---HHHHHHHHH-CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHh
Q 008029 200 HRIAVIGDLGLTSNS---STTVDHLIQ-NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRF 275 (580)
Q Consensus 200 ~rfav~gD~g~~~~~---~~~l~~i~~-~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~ 275 (580)
+||+++||.=..... ...+.++.+ .++||++..||++-.. .+.+ ....+.
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG-------~Gi~-------------------~~~~~~ 54 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHG-------KGLT-------------------LKIYEF 54 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCC-------CCCC-------------------HHHHHH
Confidence 589999998644222 233444443 4789999999998321 1110 111222
Q ss_pred hhhhccCCCeEEecCCCCCCCCcccccHHHHHh---hcCCCCCCC-CCCCcceEEEEeCcEEEEEEcC--cccCCC--cH
Q 008029 276 MEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLT---RFAVPSEES-GSNSNFYYSFNAGGVHFIMLGA--YVDYNS--TG 347 (580)
Q Consensus 276 l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~---~f~~P~~~~-~~~~~~yYsfd~G~v~fI~Ldt--~~~~~~--~~ 347 (580)
|.. ..+-++.+ |||++.... ...+.. +.--|.+-+ +..+..|..++.++.++-+++- ...... ..
T Consensus 55 L~~--~GvDviT~-GNH~~Dkge----~~~~i~~~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~ 127 (266)
T TIGR00282 55 LKQ--SGVNYITM-GNHTWFQKL----ILDVVINQKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTT 127 (266)
T ss_pred HHh--cCCCEEEc-cchhccCcH----HHHHHhccccccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCccccC
Confidence 322 25555555 999996431 111111 111122211 1223346667888766555542 211111 12
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCC
Q 008029 348 AQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDA 427 (580)
Q Consensus 348 ~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~ 427 (580)
.-++-+++.+++.+. +++.+||.+|.-. +. .+.....+.+.+|++|+.-|+|...--.+ +-|
T Consensus 128 ~Pf~~~d~~i~~lk~-~~d~IIVd~Haea-----------ts-EK~a~~~~ldg~vsaVvGtHtHV~TaD~~-----il~ 189 (266)
T TIGR00282 128 NPFKVLKELINMLKK-DCDLIFVDFHAET-----------TS-EKNAFGMAFDGYVTAVVGTHTHVPTADLR-----ILP 189 (266)
T ss_pred CHHHHHHHHHHhhhc-CCCEEEEEeCCCC-----------HH-HHHHHHHHhCCCccEEEeCCCCCCCCcce-----eCC
Confidence 223345555555432 4678999999742 11 13446677788999999999996432222 237
Q ss_pred CCcEEEEe-CCCCcccc
Q 008029 428 CGPVYITV-GDGGNIEQ 443 (580)
Q Consensus 428 ~G~vyIv~-G~gG~~e~ 443 (580)
+|+.||+- |.-|...+
T Consensus 190 ~gtayitD~Gm~G~~~s 206 (266)
T TIGR00282 190 KGTAYITDVGMTGPFGS 206 (266)
T ss_pred CCCEEEecCCcccCccc
Confidence 89999974 77776543
No 71
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.07 E-value=0.00011 Score=89.76 Aligned_cols=184 Identities=19% Similarity=0.182 Sum_probs=97.5
Q ss_pred CCeEEEEEcccCCCCC-h---HHHHHHHHHCCCCEEEE-cccccccccccccCCCCCcccccCCCCCccccccHHHHHHH
Q 008029 198 YPHRIAVIGDLGLTSN-S---STTVDHLIQNDPSLILM-VGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGW 272 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~-~---~~~l~~i~~~~pDfvl~-~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~ 272 (580)
..++|++++|+|.... . ...++++.+.+|+.+++ +||++..... ... .++...
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~--------------------~~~--~~g~~~ 716 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY--------------------SNL--LKGLPV 716 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch--------------------hhh--cCChHH
Confidence 4699999999996532 2 33456666678887765 9999853211 000 011223
Q ss_pred HHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcC------------CCC---C----CCCC---CCcceEEEEeC
Q 008029 273 GRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFA------------VPS---E----ESGS---NSNFYYSFNAG 330 (580)
Q Consensus 273 ~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~------------~P~---~----~~~~---~~~~yYsfd~G 330 (580)
.+.|+.+ -.-+.++||||+.... ..+..+..... +|- | ..+. .-..|.-++.+
T Consensus 717 ~~~ln~l---g~d~~~~GNHEfd~g~--~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~ 791 (1163)
T PRK09419 717 LKMMKEM---GYDASTFGNHEFDWGP--DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVN 791 (1163)
T ss_pred HHHHhCc---CCCEEEecccccccCh--HHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEEC
Confidence 3444433 2235699999986432 23333332211 121 0 0111 12346667888
Q ss_pred cEE--EEEEcCcc-cC----C-----CcHHHHHHHHHHHHhcc-CCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHH
Q 008029 331 GVH--FIMLGAYV-DY----N-----STGAQYAWLKEDLHKLD-RTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEAL 397 (580)
Q Consensus 331 ~v~--fI~Ldt~~-~~----~-----~~~~Q~~WLe~~L~~~~-r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~L 397 (580)
+++ ||.+-+.. .. . ......+.+++..++.+ ..+...+|++.|......... .+ ....+|
T Consensus 792 G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~-----~~~~~l 864 (1163)
T PRK09419 792 GKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE-----ITGLEL 864 (1163)
T ss_pred CEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc-----cHHHHH
Confidence 755 55554321 00 0 01223344555444443 246778999999986543211 11 123344
Q ss_pred HHhc-CCcEEEEccccCce
Q 008029 398 LYQY-GVDIVFSGHVHAYE 415 (580)
Q Consensus 398 l~ky-~VdlvlsGH~H~ye 415 (580)
.++. +||++|.||.|...
T Consensus 865 A~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 865 AKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred HHhCCCCCEEEeCCCCccc
Confidence 4443 79999999999754
No 72
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.06 E-value=3.2e-05 Score=82.15 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=72.5
Q ss_pred CeEEEEEcccCCCCCh--------------H----HHHHHHH-HCCCCEEEEcccccccccccccCCCCCcccccCCCCC
Q 008029 199 PHRIAVIGDLGLTSNS--------------S----TTVDHLI-QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDA 259 (580)
Q Consensus 199 ~~rfav~gD~g~~~~~--------------~----~~l~~i~-~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~ 259 (580)
++|++.++|.|.-.+. . .....+. ..+||.++++||+.++..+..
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~---------------- 111 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAG---------------- 111 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCC----------------
Confidence 6899999999875421 1 1111111 259999999999997543322
Q ss_pred ccccccHHHHHHHHHhhhhhc---cCCCeEEecCCCCCCCCccc--ccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEE
Q 008029 260 PIRETYQPRWDGWGRFMEPLT---SRVPMMVIEGNHEIEPQVAG--ITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHF 334 (580)
Q Consensus 260 p~~e~y~~~wd~~~~~l~~l~---~~vP~~~v~GNHD~~~~~~~--~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~f 334 (580)
+++|.+-.+.++.+. ..+|.+.++||||++..... ..-..|.+.| ++...+|+.|+..|
T Consensus 112 ------~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~f----------g~~~r~f~v~~~tf 175 (410)
T KOG3662|consen 112 ------DEEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVF----------GPTERRFDVGNLTF 175 (410)
T ss_pred ------hHHHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccchhHHHHHHHhh----------cchhhhhccCCcee
Confidence 134443333333332 57999999999999754321 1123344444 23557899999999
Q ss_pred EEEcCcccCCC
Q 008029 335 IMLGAYVDYNS 345 (580)
Q Consensus 335 I~Ldt~~~~~~ 345 (580)
+++|++.....
T Consensus 176 ~~~d~~~ls~~ 186 (410)
T KOG3662|consen 176 VMFDSNALSGN 186 (410)
T ss_pred EEeeehhhcCC
Confidence 99998754433
No 73
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=1.5e-05 Score=80.93 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=48.3
Q ss_pred eEEEEEcccCCCCCh-------------HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccH
Q 008029 200 HRIAVIGDLGLTSNS-------------STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQ 266 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-------------~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~ 266 (580)
+||++++|+|.+... ...++.+.+.++|+|+++||+++... | ..
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~-------------------p--~~-- 57 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTAN-------------------P--PA-- 57 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCC-------------------C--CH--
Confidence 589999999987431 12344445679999999999996421 0 00
Q ss_pred HHHHHHHHhhhhhcc-C-CCeEEecCCCCCC
Q 008029 267 PRWDGWGRFMEPLTS-R-VPMMVIEGNHEIE 295 (580)
Q Consensus 267 ~~wd~~~~~l~~l~~-~-vP~~~v~GNHD~~ 295 (580)
.....+.+.++.+.. . +|+++++||||..
T Consensus 58 ~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 58 EAQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 112334445555442 3 8999999999975
No 74
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.95 E-value=0.00018 Score=72.46 Aligned_cols=198 Identities=19% Similarity=0.211 Sum_probs=97.8
Q ss_pred EEEcccCCCCCh--H----HHHHHHHHC-----CCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHH
Q 008029 203 AVIGDLGLTSNS--S----TTVDHLIQN-----DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDG 271 (580)
Q Consensus 203 av~gD~g~~~~~--~----~~l~~i~~~-----~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~ 271 (580)
++++|+|.+... . ..++.+... ++|.++++||++........ .. .. ...+.....+..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~--~~-~~--------~~~~~~~~~~~~ 70 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPG--QE-EE--------LEILDIYEQYEE 70 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCc--ch-hh--------hhhhhHHHHHHH
Confidence 679999986432 1 223333333 56999999999964210000 00 00 000111223555
Q ss_pred HHHhhhhhccCCCeEEecCCCCCCCCcc--cccHHHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcc--c---C-
Q 008029 272 WGRFMEPLTSRVPMMVIEGNHEIEPQVA--GITFKSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYV--D---Y- 343 (580)
Q Consensus 272 ~~~~l~~l~~~vP~~~v~GNHD~~~~~~--~~~f~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~--~---~- 343 (580)
+.+.++.+.+.+|+++++||||.....- ......+...+. +.+ ..-..+. +.+.+++.+|+...... + +
T Consensus 71 ~~~~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~-~~~-v~~l~Np-~~~~~~g~~i~~~~G~~~~d~~~~~ 147 (243)
T cd07386 71 AAEYLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFL-PGN-VEFVSNP-ALVKIHGVDVLIYHGRSIDDVVKLI 147 (243)
T ss_pred HHHHHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcC-CCc-eEEeCCC-CEEEECCEEEEEECCCCHHHHHHhC
Confidence 6777788877899999999999853211 111223333221 100 0001122 35777888877643210 0 0
Q ss_pred --CCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeecc
Q 008029 344 --NSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVY 421 (580)
Q Consensus 344 --~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~ 421 (580)
.....-.++|+..|.+.. -.|.. -.-.|.+... .++ +..+...+++|+||.|.+....
T Consensus 148 ~~~~~~~~~~~~~~~l~~~h--l~P~~--~~~~~~~~~~-~~~------------~~~~~~p~vii~Gh~h~~~~~~--- 207 (243)
T cd07386 148 PGLSYDKPGKAMEELLKRRH--LAPIY--GGRTPIAPEP-EDY------------LVIDEVPDILHTGHVHVYGVGV--- 207 (243)
T ss_pred CCCCcccHHHHHHHHHhhcc--cCCCC--CCCEeeCCCC-CCC------------EEecCCCCEEEECCCCchHhEE---
Confidence 112233566666665521 11100 0001111100 000 1112367899999999976653
Q ss_pred ccccCCCCcEEEEeCCCC
Q 008029 422 NYTLDACGPVYITVGDGG 439 (580)
Q Consensus 422 n~~~~~~G~vyIv~G~gG 439 (580)
.+|..+|..|+--
T Consensus 208 -----~~~~~~vn~Gsf~ 220 (243)
T cd07386 208 -----YRGVLLVNSGTWQ 220 (243)
T ss_pred -----ECCEEEEECCCCc
Confidence 2478888888744
No 75
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.86 E-value=0.00039 Score=71.88 Aligned_cols=187 Identities=21% Similarity=0.139 Sum_probs=90.0
Q ss_pred eEEEEEcccCCCCC-----------hHHHHHHHHHC----CC-CEEEEcccccccccccccCCCCCcccccCCCCCcccc
Q 008029 200 HRIAVIGDLGLTSN-----------SSTTVDHLIQN----DP-SLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRE 263 (580)
Q Consensus 200 ~rfav~gD~g~~~~-----------~~~~l~~i~~~----~p-Dfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e 263 (580)
++|+..+|+|.... ....++++.+. ++ -+++.+||+...... ..
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~--------------------~~ 60 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPE--------------------SD 60 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchh--------------------HH
Confidence 47889999987521 12345555432 33 488899999843211 00
Q ss_pred ccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCC------CC-CCCcceEEEEeCcEEE--
Q 008029 264 TYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEE------SG-SNSNFYYSFNAGGVHF-- 334 (580)
Q Consensus 264 ~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~------~~-~~~~~yYsfd~G~v~f-- 334 (580)
.+ +.....+.|+.+ ..-. .++||||+.... ..+........+|.-. .+ .....|.-++.+++++
T Consensus 61 ~~--~g~~~~~~~n~~--g~Da-~~~GNHEfD~G~--~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgv 133 (285)
T cd07405 61 LQ--DAEPDFRGMNLV--GYDA-MAVGNHEFDNPL--EVLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAV 133 (285)
T ss_pred hc--CcchHHHHHHhh--CCcE-EeecccccccCH--HHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEE
Confidence 00 011122344443 3333 466999996432 2233333322233210 01 1123466777887664
Q ss_pred EEEcCccc-C--C-------CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCc
Q 008029 335 IMLGAYVD-Y--N-------STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVD 404 (580)
Q Consensus 335 I~Ldt~~~-~--~-------~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~Vd 404 (580)
|.+-+... . . ......+=+++.+++.+..+...+|++.|-............. ....+.+.+...++|
T Consensus 134 iG~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~~~~~~--~~~~lA~~~~~~giD 211 (285)
T cd07405 134 IGLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEHGSNAP--GDVEMARALPAGGLD 211 (285)
T ss_pred EEecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCccccccCc--hHHHHHHhcCCCCCC
Confidence 44433211 0 0 0111222233333333223567899999988753321100000 012233333235899
Q ss_pred EEEEccccCce
Q 008029 405 IVFSGHVHAYE 415 (580)
Q Consensus 405 lvlsGH~H~ye 415 (580)
++|.||.|...
T Consensus 212 ~IigGHsH~~~ 222 (285)
T cd07405 212 LIVGGHSQDPV 222 (285)
T ss_pred EEEeCCCCccc
Confidence 99999999854
No 76
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.85 E-value=1.8e-05 Score=77.77 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=25.3
Q ss_pred EEEEEcccCCCCCh-HHHHHHHHH-CCCCEEEEccccccc
Q 008029 201 RIAVIGDLGLTSNS-STTVDHLIQ-NDPSLILMVGDLTYA 238 (580)
Q Consensus 201 rfav~gD~g~~~~~-~~~l~~i~~-~~pDfvl~~GDl~Y~ 238 (580)
||+++||+|..... .++++.+.. .++|.++++||+++.
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~ 41 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDR 41 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccC
Confidence 68999999965322 122232221 368999999999963
No 77
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.82 E-value=4.5e-05 Score=80.84 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=46.5
Q ss_pred eEEEEEcccCCCCCh-------------HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccH
Q 008029 200 HRIAVIGDLGLTSNS-------------STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQ 266 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-------------~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~ 266 (580)
+||++++|+|.+... ...++.+.+++||+||++||+.+.... +..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~------------------~~~---- 58 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKA------------------ITQ---- 58 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCC------------------CCH----
Confidence 589999999987431 123344456899999999999854210 000
Q ss_pred HHHHHHHH-hhhhhc-cCCCeEEecCCCCCC
Q 008029 267 PRWDGWGR-FMEPLT-SRVPMMVIEGNHEIE 295 (580)
Q Consensus 267 ~~wd~~~~-~l~~l~-~~vP~~~v~GNHD~~ 295 (580)
.......+ +++.+. ..+|+++++||||..
T Consensus 59 ~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 59 NTMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 11111112 233332 479999999999974
No 78
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.81 E-value=4.6e-05 Score=82.60 Aligned_cols=73 Identities=23% Similarity=0.411 Sum_probs=46.8
Q ss_pred eEEEEEcccCCCCCh-------------HHHHHHHHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccH
Q 008029 200 HRIAVIGDLGLTSNS-------------STTVDHLIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQ 266 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-------------~~~l~~i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~ 266 (580)
+||++++|+|.+... ...++.+.+.+||+||++||+.+.. . | ..+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~-------~------------p--~~~- 58 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTG-------S------------P--PSY- 58 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCC-------C------------C--cHH-
Confidence 589999999987321 1233444568999999999998531 1 0 001
Q ss_pred HHHHHHHHhhhhhc-cCCCeEEecCCCCCC
Q 008029 267 PRWDGWGRFMEPLT-SRVPMMVIEGNHEIE 295 (580)
Q Consensus 267 ~~wd~~~~~l~~l~-~~vP~~~v~GNHD~~ 295 (580)
....+.+++..+. ..+|+++++||||..
T Consensus 59 -a~~~~~~~l~~L~~~~~~v~~I~GNHD~~ 87 (407)
T PRK10966 59 -ARELYNRFVVNLQQTGCQLVVLAGNHDSV 87 (407)
T ss_pred -HHHHHHHHHHHHHhcCCcEEEEcCCCCCh
Confidence 1122233333333 368999999999975
No 79
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.78 E-value=5.2e-05 Score=72.02 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=38.6
Q ss_pred EEEcccCCCCCh----------------HHHHHHHHH--CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccc
Q 008029 203 AVIGDLGLTSNS----------------STTVDHLIQ--NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRET 264 (580)
Q Consensus 203 av~gD~g~~~~~----------------~~~l~~i~~--~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~ 264 (580)
.+++|+|.+... ...++.+.+ .++|.|+++||++... .
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~-------~----------------- 57 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGG-------K----------------- 57 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCC-------C-----------------
Confidence 367888887532 122333333 2689999999999531 1
Q ss_pred cHHHHHHHHHhhhhhccCCCeEEecCCCCCC
Q 008029 265 YQPRWDGWGRFMEPLTSRVPMMVIEGNHEIE 295 (580)
Q Consensus 265 y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 295 (580)
...+ .+.++.+ ..|++.++||||..
T Consensus 58 -~~~~---~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 58 -AGTE---LELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred -hHHH---HHHHHhC--CCCeEEEeCCCCch
Confidence 0111 2333333 46899999999964
No 80
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00087 Score=75.10 Aligned_cols=185 Identities=19% Similarity=0.136 Sum_probs=101.8
Q ss_pred CCeEEEEEcccCCCCC------------h----HHHHHHHHHC-CCCEEEEcccccccccccccCCCCCcccccCCCCCc
Q 008029 198 YPHRIAVIGDLGLTSN------------S----STTVDHLIQN-DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAP 260 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~------------~----~~~l~~i~~~-~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p 260 (580)
..++|+...|+|.... . ...++++.+. +..++|.+||+...+...+
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~----------------- 87 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSD----------------- 87 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccc-----------------
Confidence 4799999999997633 1 1234444443 4468899999996432100
Q ss_pred cccccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCC------C---CCCCCcceEEEEeCc
Q 008029 261 IRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSE------E---SGSNSNFYYSFNAGG 331 (580)
Q Consensus 261 ~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~------~---~~~~~~~yYsfd~G~ 331 (580)
+........+.|+.+ -.=..+.||||+... .+.+..+.....+|.- . .....+.|.-++.++
T Consensus 88 ----~~~~g~~~~~~mN~m---~yDa~tiGNHEFd~g--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g 158 (517)
T COG0737 88 ----YLTKGEPTVDLLNAL---GYDAMTLGNHEFDYG--LEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGG 158 (517)
T ss_pred ----cccCCChHHHHHhhc---CCcEEeecccccccC--HHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCC
Confidence 001112223444433 122567899999643 2334555555555521 1 112335788889987
Q ss_pred EE--EEEEcCcc--cC---C-----CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHH
Q 008029 332 VH--FIMLGAYV--DY---N-----STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLY 399 (580)
Q Consensus 332 v~--fI~Ldt~~--~~---~-----~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ 399 (580)
++ +|.+.+.. .+ . ......+++++.+.+.+.++..-+|++.|-+............ .......
T Consensus 159 ~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~-~~~~~~~---- 233 (517)
T COG0737 159 VKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVP-GDVDVAV---- 233 (517)
T ss_pred eEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccccc-ccccccc----
Confidence 55 55555311 11 1 1234567777777776544467899999998765432111100 0000000
Q ss_pred hcCCcEEEEccccCc
Q 008029 400 QYGVDIVFSGHVHAY 414 (580)
Q Consensus 400 ky~VdlvlsGH~H~y 414 (580)
.++|+++.||.|.+
T Consensus 234 -~~iD~i~~GH~H~~ 247 (517)
T COG0737 234 -PGIDLIIGGHSHTV 247 (517)
T ss_pred -cCcceEeccCCccc
Confidence 44999999999964
No 81
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.67 E-value=5.9e-05 Score=74.33 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCcEEEEccccCce
Q 008029 393 EMEALLYQYGVDIVFSGHVHAYE 415 (580)
Q Consensus 393 ~l~~Ll~ky~VdlvlsGH~H~ye 415 (580)
.+..+|..++.++++.||+|...
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~ 180 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEG 180 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeec
Confidence 57788899999999999999754
No 82
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.62 E-value=0.00014 Score=72.11 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=26.8
Q ss_pred EEEEEcccCCCCCh-HHHHHHHH-HCCCCEEEEccccccc
Q 008029 201 RIAVIGDLGLTSNS-STTVDHLI-QNDPSLILMVGDLTYA 238 (580)
Q Consensus 201 rfav~gD~g~~~~~-~~~l~~i~-~~~pDfvl~~GDl~Y~ 238 (580)
|++++||+|..... .++++.+. ..+.|.++++||+++.
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdr 55 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDR 55 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCC
Confidence 89999999976432 22333332 2468999999999964
No 83
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.61 E-value=0.0013 Score=74.26 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=59.2
Q ss_pred EEecCCCCCCCCcccccHHHHHhhcCCCCCC------CC----CCCcceEEEEeCc--EEEEEEcCccc-C---CCc---
Q 008029 286 MVIEGNHEIEPQVAGITFKSYLTRFAVPSEE------SG----SNSNFYYSFNAGG--VHFIMLGAYVD-Y---NST--- 346 (580)
Q Consensus 286 ~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~------~~----~~~~~yYsfd~G~--v~fI~Ldt~~~-~---~~~--- 346 (580)
+.++||||+... ...+..+.....+|--. .. ..-..|.-++.++ +-||.|.+... . ...
T Consensus 85 a~~lGNHEFd~G--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~ 162 (550)
T TIGR01530 85 FFTLGNHEFDAG--NEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDI 162 (550)
T ss_pred EEEeccccccCC--HHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCce
Confidence 677999998643 23444444444444211 00 1123566778887 55677754211 0 000
Q ss_pred --HHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhc-CCcEEEEccccCce
Q 008029 347 --GAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY-GVDIVFSGHVHAYE 415 (580)
Q Consensus 347 --~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky-~VdlvlsGH~H~ye 415 (580)
....+=+++..++.++.+...+|++.|..... . ..+.++. +||++|.||+|.+-
T Consensus 163 ~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~~--------d-------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 163 KFIDEIAAAQIAANALKQQGINKIILLSHAGFEK--------N-------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred EECCHHHHHHHHHHHHHhCCCCEEEEEecCCcHH--------H-------HHHHhcCCCCCEEEeCCCCccc
Confidence 11122233333333224567899999975211 0 1233333 79999999999853
No 84
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.60 E-value=0.00096 Score=75.34 Aligned_cols=185 Identities=18% Similarity=0.124 Sum_probs=91.8
Q ss_pred CCeEEEEEcccCCCCC--------h---HHHHHHHHHC----CC-CEEEEcccccccccccccCCCCCcccccCCCCCcc
Q 008029 198 YPHRIAVIGDLGLTSN--------S---STTVDHLIQN----DP-SLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPI 261 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~--------~---~~~l~~i~~~----~p-Dfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~ 261 (580)
..++|+..+|+|.... . ...++++.+. ++ -++|.+||+......
T Consensus 33 ~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-------------------- 92 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-------------------- 92 (551)
T ss_pred eEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh--------------------
Confidence 4799999999998632 1 1234444321 33 578899999843211
Q ss_pred ccccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCC-------CC-CCCcceEEEEeCcEE
Q 008029 262 RETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEE-------SG-SNSNFYYSFNAGGVH 333 (580)
Q Consensus 262 ~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~-------~~-~~~~~yYsfd~G~v~ 333 (580)
...+ +.....+.|+.+ ..- +.++||||+.... ..+..+.....+|--. .+ ..-..|.-++.++++
T Consensus 93 s~~~--~g~~~i~~mN~~--g~D-a~tlGNHEFD~G~--~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~k 165 (551)
T PRK09558 93 SDLQ--DAEPDFRGMNLI--GYD-AMAVGNHEFDNPL--SVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLK 165 (551)
T ss_pred hhhc--CCchhHHHHhcC--CCC-EEcccccccCcCH--HHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEE
Confidence 1101 011123344443 333 4557999986432 2333333333333210 01 112346667888755
Q ss_pred --EEEEcCcccC---C-------CcHHHHHHHHHHHHhccC-CCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHh
Q 008029 334 --FIMLGAYVDY---N-------STGAQYAWLKEDLHKLDR-TVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQ 400 (580)
Q Consensus 334 --fI~Ldt~~~~---~-------~~~~Q~~WLe~~L~~~~r-~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~k 400 (580)
||.+-+.... . ......+-+++.+++.+. .+...+|++.|.......... .... .-..|.++
T Consensus 166 IgiiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~-~~~~----~d~~la~~ 240 (551)
T PRK09558 166 IAVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHG-SNAP----GDVEMARS 240 (551)
T ss_pred EEEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccC-CCCc----cHHHHHHh
Confidence 4554332110 0 011122333444443332 457789999998875322110 0000 00233333
Q ss_pred c---CCcEEEEccccCc
Q 008029 401 Y---GVDIVFSGHVHAY 414 (580)
Q Consensus 401 y---~VdlvlsGH~H~y 414 (580)
. +||++|.||.|..
T Consensus 241 ~~~~~IDvIlgGHsH~~ 257 (551)
T PRK09558 241 LPAGGLDMIVGGHSQDP 257 (551)
T ss_pred CCccCceEEEeCCCCcc
Confidence 3 7999999999975
No 85
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.58 E-value=0.00011 Score=72.81 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=27.5
Q ss_pred EEEEEcccCCCCCh-HHHHHHHHHC-CCCEEEEccccccc
Q 008029 201 RIAVIGDLGLTSNS-STTVDHLIQN-DPSLILMVGDLTYA 238 (580)
Q Consensus 201 rfav~gD~g~~~~~-~~~l~~i~~~-~pDfvl~~GDl~Y~ 238 (580)
|++++||+|..... .++++++... +.|-++++||+++.
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDr 57 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDR 57 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCC
Confidence 89999999986433 3344444323 57899999999964
No 86
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.46 E-value=0.0017 Score=68.03 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=25.9
Q ss_pred CCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhc-CCcEEEEccccCce
Q 008029 363 TVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY-GVDIVFSGHVHAYE 415 (580)
Q Consensus 363 ~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky-~VdlvlsGH~H~ye 415 (580)
.+..-+|++.|---+. .. ..|.++. +||++|.||+|.+-
T Consensus 206 ~gvD~II~LsH~g~~~-------~d-------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS-------IE-------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc-------hH-------HHHHhcCCCCCEEEeCCCCccC
Confidence 4567799999983111 11 1244454 79999999999853
No 87
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.39 E-value=0.00027 Score=67.32 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=42.4
Q ss_pred EEEcccCCCCCh--------------HHHHHH----HHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccc
Q 008029 203 AVIGDLGLTSNS--------------STTVDH----LIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRET 264 (580)
Q Consensus 203 av~gD~g~~~~~--------------~~~l~~----i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~ 264 (580)
++++|+|.+... .+++++ +.+.+||.++++||+++.... . .
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~-----~----------------~ 59 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGG-----L----------------S 59 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccc-----c----------------C
Confidence 367888887421 123333 345799999999999964210 0 0
Q ss_pred cHHHHHHHHHhhhhhccCCCeEEecCCCCCC
Q 008029 265 YQPRWDGWGRFMEPLTSRVPMMVIEGNHEIE 295 (580)
Q Consensus 265 y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 295 (580)
...+.... .+......+|++.++||||..
T Consensus 60 -~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 60 -RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred -HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 11222221 233344678999999999974
No 88
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.31 E-value=0.00089 Score=62.51 Aligned_cols=53 Identities=15% Similarity=-0.038 Sum_probs=32.3
Q ss_pred EEEEeCCCCccCCC-CCcc----hhHHHHHHHHHHHHhcCCcEEEEcccc-CceeEeecc
Q 008029 368 LAAAWHPPWYNSYS-SHYQ----EFECMRQEMEALLYQYGVDIVFSGHVH-AYERMNRVY 421 (580)
Q Consensus 368 vIv~~H~P~y~s~~-~~~~----~~~~~r~~l~~Ll~ky~VdlvlsGH~H-~yeR~~pv~ 421 (580)
-|+++|.|++.... .... ....-...+.+++++.+..+.|+||.| .|||- |-.
T Consensus 71 DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~-Pf~ 129 (150)
T cd07380 71 DILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYERE-PYR 129 (150)
T ss_pred CEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEeec-Ccc
Confidence 47777777765421 1000 000113466778888999999999999 56664 443
No 89
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.30 E-value=0.0025 Score=66.02 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=103.3
Q ss_pred eEEEEEcccCCCCC-hHHHHHHHHHC---CCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHh
Q 008029 200 HRIAVIGDLGLTSN-SSTTVDHLIQN---DPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRF 275 (580)
Q Consensus 200 ~rfav~gD~g~~~~-~~~~l~~i~~~---~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~ 275 (580)
+||+|-|++|..-+ ..+++..+.+. +.|++|.+||+---. |+ . |- ..-.+...|+..-+-|.-.
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavR----n~-~--D~-----~siavPpKy~~m~~F~~YY 68 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVR----NE-Q--DL-----KSIAVPPKYRRMGDFYKYY 68 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhc----ch-h--hc-----ccccCCHHHHHHHHHHHHh
Confidence 58999999998643 35666777665 899999999985221 11 1 11 1112234454332222222
Q ss_pred hhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCCCCCcceE-----EEEeCcEEEEEEcC---cccCCC--
Q 008029 276 MEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESGSNSNFYY-----SFNAGGVHFIMLGA---YVDYNS-- 345 (580)
Q Consensus 276 l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~~~~~~yY-----sfd~G~v~fI~Ldt---~~~~~~-- 345 (580)
-..+.+.+|.+++=||||.. .|... +|..+- ...+.|| -.++||+|+-.|.. +.+|..
T Consensus 69 sge~~APVlTIFIGGNHEAs---------nyL~e--LpyGGw-VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh 136 (456)
T KOG2863|consen 69 SGEIKAPVLTIFIGGNHEAS---------NYLQE--LPYGGW-VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGH 136 (456)
T ss_pred CCcccCceeEEEecCchHHH---------HHHHh--cccCce-eccceEEeeecceEEECCEEEeeccchhhhhhcccCC
Confidence 24456789999999999973 23222 233110 1235565 35788999998876 223221
Q ss_pred ---------------cHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHH-----------H------HHH
Q 008029 346 ---------------TGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFEC-----------M------RQE 393 (580)
Q Consensus 346 ---------------~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~-----------~------r~~ 393 (580)
.-.+++ ...|.+. +.|--|+++|.=+.... .+++... + ...
T Consensus 137 ~E~ppyn~stiRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~GI~--~yGd~~~LLr~KPFFrqeie~~~LGSp~ 209 (456)
T KOG2863|consen 137 FEWPPYNNSTIRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRGIY--YYGDKKQLLRLKPFFRQEIEEGKLGSPA 209 (456)
T ss_pred CCCCCccchhhhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcchh--hcCCHHHHHhcCcHHHHHHhcCCcCChH
Confidence 111111 1123333 34556778885332211 1111110 1 247
Q ss_pred HHHHHHhcCCcEEEEccccC
Q 008029 394 MEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 394 l~~Ll~ky~VdlvlsGH~H~ 413 (580)
+++||++.+...+|+.|.|.
T Consensus 210 ~~eLL~~LkP~yWfsAHLH~ 229 (456)
T KOG2863|consen 210 LEELLEDLKPQYWFSAHLHV 229 (456)
T ss_pred HHHHHHHhCcchhhhhhHhh
Confidence 88999999999999999995
No 90
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.19 E-value=0.016 Score=67.84 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=93.3
Q ss_pred CCeEEEEEcccCCCCC-----------------hHHHHHHHHHCCC-CEEEEcccccccccccccCCCCCcccccCCCCC
Q 008029 198 YPHRIAVIGDLGLTSN-----------------SSTTVDHLIQNDP-SLILMVGDLTYANQYLTTGGKAASCYSCAFPDA 259 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~-----------------~~~~l~~i~~~~p-Dfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~ 259 (580)
..++|+..+|+|.... ....++++.+..+ -++|..||++....+.+ |.+.. .
T Consensus 114 ~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~--------~~a~~--~ 183 (814)
T PRK11907 114 VDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGT--------YKAIV--D 183 (814)
T ss_pred eEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccc--------hhhhc--c
Confidence 4699999999997521 0123455544444 47889999995432100 00000 0
Q ss_pred ccccccHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCC-------CCC-CCcceEEEEe--
Q 008029 260 PIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEE-------SGS-NSNFYYSFNA-- 329 (580)
Q Consensus 260 p~~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~-------~~~-~~~~yYsfd~-- 329 (580)
++ ++.+-.-..+.|+.+. . =..++||||+... ...+..+.....+|.-. .+. .-..|--++.
T Consensus 184 ~~---~~g~~~P~i~amN~LG--y-DA~tLGNHEFDyG--~d~L~~~l~~a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~ 255 (814)
T PRK11907 184 PV---EEGEQHPMYAALEALG--F-DAGTLGNHEFNYG--LDYLEKVIATANMPIVNANVLDPTTGDFLYTPYTIVTKTF 255 (814)
T ss_pred cc---ccCcchHHHHHHhccC--C-CEEEechhhcccC--HHHHHHHHHhCCCCEEEeeeeecCCCCccCCCeEEEEEEE
Confidence 00 0000011234454442 1 2567899998643 22334444433444311 000 1123444443
Q ss_pred ---Cc------EEEEEEcCcc--cCC--------CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHH
Q 008029 330 ---GG------VHFIMLGAYV--DYN--------STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECM 390 (580)
Q Consensus 330 ---G~------v~fI~Ldt~~--~~~--------~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~ 390 (580)
++ |-||.+-+.. .+. ....-.+-+++...+.+..+...+|++.|.-+.........+ .
T Consensus 256 ~d~~G~~~~vKIGiIGlvtp~~~~w~~~~l~g~v~f~D~veaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~E--n- 332 (814)
T PRK11907 256 TDTEGKKVTLNIGITGIVPPQILNWDKANLEGKVIVRDAVEAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEE--N- 332 (814)
T ss_pred ecCCCcccceEEEEEEeCchhhhhcccccccCCeEECCHHHHHHHHHHHHHhcCCCEEEEEeCCCccccccccccc--c-
Confidence 33 5566654321 010 012233444454444443567889999998764322111111 1
Q ss_pred HHHHHHHHHhcCCcEEEEccccCc
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHAY 414 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~y 414 (580)
.-..|..--+||++|.||.|..
T Consensus 333 --~~~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 333 --VGYQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred --hhhHHhcCCCCCEEEECCCCCc
Confidence 1122332348999999999984
No 91
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.12 E-value=0.0077 Score=73.89 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=35.1
Q ss_pred HHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhc-CCcEEEEccccCce
Q 008029 353 LKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY-GVDIVFSGHVHAYE 415 (580)
Q Consensus 353 Le~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky-~VdlvlsGH~H~ye 415 (580)
+++.+.+.++.+...+|++.|............ .....+|.++. +||+++.||.|...
T Consensus 223 ~~~~v~~lk~~gaDvII~l~H~G~~~~~~~~~~-----en~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 223 ANKTIPEMKKGGADVIVALAHSGIESEYQSSGA-----EDSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCcCCCCCCCCc-----chHHHHHHHhCCCCcEEEeCCCcccc
Confidence 333333433356788999999886543221111 12333455443 89999999999864
No 92
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.00 E-value=0.019 Score=67.03 Aligned_cols=47 Identities=26% Similarity=0.152 Sum_probs=28.7
Q ss_pred CCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhc-CCcEEEEccccCce
Q 008029 363 TVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY-GVDIVFSGHVHAYE 415 (580)
Q Consensus 363 ~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky-~VdlvlsGH~H~ye 415 (580)
.+...+|++.|......... . .+..+... +.+. +||++|.||+|..-
T Consensus 243 ~GaDvIIaLsH~G~~~d~~~---~--~~ena~~~-l~~v~gID~IlgGHsH~~~ 290 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGYN---V--GMENASYY-LTEVPGVDAVLMGHSHTEV 290 (780)
T ss_pred cCCCEEEEEeccCccccccc---c--cchhhhHH-HhcCCCCCEEEECCCCCcc
Confidence 45778999999876442111 1 01111111 3444 89999999999864
No 93
>PHA02239 putative protein phosphatase
Probab=96.99 E-value=0.0012 Score=66.22 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=27.0
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHHC--CCCEEEEccccccc
Q 008029 200 HRIAVIGDLGLTSNS-STTVDHLIQN--DPSLILMVGDLTYA 238 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-~~~l~~i~~~--~pDfvl~~GDl~Y~ 238 (580)
+|++++||+|..... .+.++.+... ..|.++++||+++.
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDr 42 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDR 42 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCC
Confidence 478999999965322 3344444332 35999999999964
No 94
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.83 E-value=0.02 Score=52.93 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=25.0
Q ss_pred EEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccC
Q 008029 368 LAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 368 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.|++.|.|.-..... + ........+.++++.+.||.|.
T Consensus 110 ~~~LsHyP~~~~~~~--~------~~~r~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 110 DVYLSHYPRPGQDHP--G------MESRFDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred EEEEEeCCCCCCCCc--c------hhhhHHHHhccCCeEEeccccc
Confidence 799999996554321 1 1112233455789999999998
No 95
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.76 E-value=0.0017 Score=66.65 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=27.4
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHH-HCCCCEEEEccccccc
Q 008029 200 HRIAVIGDLGLTSNS-STTVDHLI-QNDPSLILMVGDLTYA 238 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-~~~l~~i~-~~~pDfvl~~GDl~Y~ 238 (580)
++++++||+|..... .++++++. +.+.|.++++||+++.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdr 41 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNR 41 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCC
Confidence 468999999976443 23344442 2368999999999963
No 96
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.75 E-value=0.0036 Score=62.49 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=45.9
Q ss_pred eEEEEEcccCCCCCh--------------HHHHHHHH----HCCCCEEEEcccccccccccccCCCCCcccccCCCCCcc
Q 008029 200 HRIAVIGDLGLTSNS--------------STTVDHLI----QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPI 261 (580)
Q Consensus 200 ~rfav~gD~g~~~~~--------------~~~l~~i~----~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~ 261 (580)
-+.++++|+|.+... .++++++. +.+||.++++||+.+.... .
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~-------------------~ 75 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKK-------------------G 75 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCC-------------------h
Confidence 357899999997421 13444443 4589999999999964210 0
Q ss_pred ccccHHHHHHHHHhhhhhccCCCeEEecCCCCCC
Q 008029 262 RETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIE 295 (580)
Q Consensus 262 ~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 295 (580)
..|..+.++++.+ ..+++.++||||..
T Consensus 76 -----~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 76 -----LEWRFIREFIEVT--FRDLILIRGNHDAL 102 (225)
T ss_pred -----HHHHHHHHHHHhc--CCcEEEECCCCCCc
Confidence 1234444455444 35999999999963
No 97
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.52 E-value=0.066 Score=61.65 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHh-cCCcEEEEccccCc
Q 008029 351 AWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQ-YGVDIVFSGHVHAY 414 (580)
Q Consensus 351 ~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~k-y~VdlvlsGH~H~y 414 (580)
+-+++...+.+..+...+|++.|............+ ..... +.+ -+||+++.||.|..
T Consensus 205 e~a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~ae-----n~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 205 ETARKYVPEMKEKGADIVVAIPHSGISADPYKAMAE-----NSVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcCCCCcccccc-----chhHH-HhcCCCCCEEEeCCCCcc
Confidence 334444444433467889999998764321111111 11112 334 37999999999985
No 98
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.50 E-value=0.065 Score=61.48 Aligned_cols=46 Identities=24% Similarity=0.156 Sum_probs=28.1
Q ss_pred CCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhc-CCcEEEEccccCc
Q 008029 363 TVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY-GVDIVFSGHVHAY 414 (580)
Q Consensus 363 ~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky-~VdlvlsGH~H~y 414 (580)
.+...+|++.|........... .+. .. ..|.+. +||+++.||+|..
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~~--~en---~~-~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQPG--AEN---SA-YYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred cCCCEEEEEeccCcCCCccccc--cch---HH-HHHhcCCCCCEEEcCCCCcc
Confidence 4577899999987654311110 111 11 123443 8999999999984
No 99
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.45 E-value=0.0034 Score=62.94 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=26.3
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHH---HC-------CCCEEEEccccccc
Q 008029 200 HRIAVIGDLGLTSNS-STTVDHLI---QN-------DPSLILMVGDLTYA 238 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-~~~l~~i~---~~-------~pDfvl~~GDl~Y~ 238 (580)
+||+++||+|..... .++++++. +. +.|.++++||+++.
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr 50 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR 50 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC
Confidence 379999999986433 23444431 11 36899999999964
No 100
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.37 E-value=0.0084 Score=60.42 Aligned_cols=142 Identities=19% Similarity=0.303 Sum_probs=88.2
Q ss_pred hhhhccCCCeEEecCCCCCCCCcccc-------cHHHHHhhcCCCCC------C--CCCCCcceEEEEeCcEEEEEEcCc
Q 008029 276 MEPLTSRVPMMVIEGNHEIEPQVAGI-------TFKSYLTRFAVPSE------E--SGSNSNFYYSFNAGGVHFIMLGAY 340 (580)
Q Consensus 276 l~~l~~~vP~~~v~GNHD~~~~~~~~-------~f~~y~~~f~~P~~------~--~~~~~~~yYsfd~G~v~fI~Ldt~ 340 (580)
..++...+|+|+-.||||........ ....|...+.-+.. . +-.....-||++.|++|.+-+-+.
T Consensus 164 vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf 243 (392)
T COG5555 164 VGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRF 243 (392)
T ss_pred CCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcCcCcccCCCCCcccccccchheeccccceeEEEEeee
Confidence 44555679999999999997443222 22333332222211 0 112334569999999998887654
Q ss_pred ccCCC--cHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcc----------------hhHHHHHHHHHHHHhcC
Q 008029 341 VDYNS--TGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQ----------------EFECMRQEMEALLYQYG 402 (580)
Q Consensus 341 ~~~~~--~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~----------------~~~~~r~~l~~Ll~ky~ 402 (580)
..-.. ...-+-||+.+|........| ++++.|.-+-.-..+.+. .....|.+|...++-|+
T Consensus 244 ~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYN 322 (392)
T COG5555 244 IGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYN 322 (392)
T ss_pred ccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCce
Confidence 32111 233467999999876545555 888888765432111110 01234778999999999
Q ss_pred CcEEEEccccCceeEe
Q 008029 403 VDIVFSGHVHAYERMN 418 (580)
Q Consensus 403 VdlvlsGH~H~yeR~~ 418 (580)
|...+.||.|.+.-.+
T Consensus 323 vvg~fhGhkhd~~may 338 (392)
T COG5555 323 VVGTFHGHKHDFNMAY 338 (392)
T ss_pred eEEeccccccccceee
Confidence 9999999999874443
No 101
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.33 E-value=0.05 Score=55.30 Aligned_cols=191 Identities=15% Similarity=0.213 Sum_probs=96.3
Q ss_pred EEEEcccCCCCCh------HHHHHHHHH-----------CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccc
Q 008029 202 IAVIGDLGLTSNS------STTVDHLIQ-----------NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRET 264 (580)
Q Consensus 202 fav~gD~g~~~~~------~~~l~~i~~-----------~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~ 264 (580)
+++++|+|.+.+. +..++.+.. .+..-+|++||.+...+..... ..+ ...+......+.
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~---~~~-~~~~~~~~~~~~ 77 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDS---QTK-ARYLTKKSSAAS 77 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccch---hhh-hhccccccchhh
Confidence 7889999987553 112233321 2345799999999643210000 000 000000001111
Q ss_pred cHHHHHHHHHhhhhhccCCCeEEecCCCCCCCCccc-ccH-HHHHhhcCCCCCCCCCCCcceEEEEeCcEEEEEEcCcc-
Q 008029 265 YQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVAG-ITF-KSYLTRFAVPSEESGSNSNFYYSFNAGGVHFIMLGAYV- 341 (580)
Q Consensus 265 y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~~~-~~f-~~y~~~f~~P~~~~~~~~~~yYsfd~G~v~fI~Ldt~~- 341 (580)
+ .+.+.+.+++..+.+.+|+.+.|||||-....-. +.+ ..+..+-.... .-....|- |.|++++++|++.....
T Consensus 78 ~-~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~-~~~~vtNP-~~~~i~g~~vLgtsGqni 154 (257)
T cd07387 78 V-EAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYS-TLNLVTNP-YEFSIDGVRVLGTSGQNV 154 (257)
T ss_pred H-HHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccC-CcEEeCCC-eEEEECCEEEEEECCCCH
Confidence 2 3456677788888899999999999998643221 111 11110000000 00111222 56999999999988642
Q ss_pred ----cCCCcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCC--cchhHHHHHHHHHHHHhcCCcEEEEccccCce
Q 008029 342 ----DYNSTGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSH--YQEFECMRQEMEALLYQYGVDIVFSGHVHAYE 415 (580)
Q Consensus 342 ----~~~~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~--~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~ye 415 (580)
.|...+.-++.||+.|+-- .-+ |.+...-.- +.+. .++.-+.-.+++|+||.|.|+
T Consensus 155 ~Di~ky~~~~~~l~~me~~L~wr--Hla---------PTaPDTL~~yP~~~~-------Dpfvi~~~PhVyf~Gnq~~f~ 216 (257)
T cd07387 155 DDILKYSSLESRLDILERTLKWR--HIA---------PTAPDTLWCYPFTDR-------DPFILEECPHVYFAGNQPKFG 216 (257)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhc--ccC---------CCCCCccccccCCCC-------CceeecCCCCEEEeCCCccee
Confidence 1233445577788877651 111 111110000 0000 122223457999999999987
Q ss_pred eE
Q 008029 416 RM 417 (580)
Q Consensus 416 R~ 417 (580)
-.
T Consensus 217 t~ 218 (257)
T cd07387 217 TK 218 (257)
T ss_pred ee
Confidence 64
No 102
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.32 E-value=0.0073 Score=61.01 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=25.0
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHH---------CCCCEEEEccccccc
Q 008029 200 HRIAVIGDLGLTSNS-STTVDHLIQ---------NDPSLILMVGDLTYA 238 (580)
Q Consensus 200 ~rfav~gD~g~~~~~-~~~l~~i~~---------~~pDfvl~~GDl~Y~ 238 (580)
+|++++||+|..... .++++++.- ..-|.++++||+++.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDR 49 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDR 49 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCC
Confidence 478999999976432 223333211 123789999999964
No 103
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.099 Score=56.82 Aligned_cols=90 Identities=18% Similarity=0.356 Sum_probs=56.8
Q ss_pred CCeEEEEEcccCCCCCh------HHHHHHHH-----HCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccH
Q 008029 198 YPHRIAVIGDLGLTSNS------STTVDHLI-----QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQ 266 (580)
Q Consensus 198 ~~~rfav~gD~g~~~~~------~~~l~~i~-----~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~ 266 (580)
..+++++++|.|.+... ...++.+. ..+...++.+||+++.-+- |.....+..+.+-|
T Consensus 224 e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigi----------Ypgq~~eL~i~di~- 292 (481)
T COG1311 224 ERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGI----------YPGQEEELVIADIY- 292 (481)
T ss_pred cceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEeccccccccc----------ccCcccccccccch-
Confidence 46889999999987432 22333332 1245789999999963221 11111122223333
Q ss_pred HHHHHHHHhhhhhccCCCeEEecCCCCCCCCc
Q 008029 267 PRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQV 298 (580)
Q Consensus 267 ~~wd~~~~~l~~l~~~vP~~~v~GNHD~~~~~ 298 (580)
.+++.+.+++..+-..+-+++.|||||.....
T Consensus 293 ~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a 324 (481)
T COG1311 293 EQYEELAEFLDQVPEHIKVFIMPGNHDAVRQA 324 (481)
T ss_pred HHHHHHHHHHhhCCCCceEEEecCCCCccccc
Confidence 35667778888777889999999999986543
No 104
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.06 E-value=0.034 Score=45.21 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=47.7
Q ss_pred CCceEEEEeCCCCcEEEEEEeCCCCCCCCCCCCCCCCCCcEEEEcccCCCcceEEeeEEEEEeeecccCCccccccccEE
Q 008029 77 FPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWYGKQSGKYTSKRGGNATVYSQLYPFKGLLNYTSGIIH 156 (580)
Q Consensus 77 ~P~qi~la~~~~~sm~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~~~~~h 156 (580)
.|+.+++.-...+++.|+|...... +.. ...=.|+|....+..... .... ++-.+
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~-~~~-------~~~y~v~~~~~~~~~~~~----~~~~-------------~~~~~ 56 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSG-NGP-------ITGYRVEYRSVNSTSDWQ----EVTV-------------PGNET 56 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSST-SSS-------ESEEEEEEEETTSSSEEE----EEEE-------------ETTSS
T ss_pred cCcCeEEEECCCCEEEEEEECCCCC-CCC-------eeEEEEEEEecccceeee----eeee-------------eeeee
Confidence 5888888877899999999986411 111 123456665554432110 0000 11224
Q ss_pred EEEeCCCCCCCEEEEEEEeCC
Q 008029 157 HVKIDGLDPGTKYYYKCGDSK 177 (580)
Q Consensus 157 ~v~l~gL~P~T~Y~Yrvg~~~ 177 (580)
.++|+||+|+|+|.++|...+
T Consensus 57 ~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 57 SYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp EEEEESCCTTSEEEEEEEEEE
T ss_pred eeeeccCCCCCEEEEEEEEEe
Confidence 778899999999999998654
No 105
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.83 E-value=0.099 Score=52.41 Aligned_cols=135 Identities=14% Similarity=0.166 Sum_probs=69.9
Q ss_pred HHhhhhhccCCCeEEecCCCCCCCCcccccHHHHH---hhcCCCCCCCCCC---CcceEEEEeCc--EEEEEEcCcccCC
Q 008029 273 GRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYL---TRFAVPSEESGSN---SNFYYSFNAGG--VHFIMLGAYVDYN 344 (580)
Q Consensus 273 ~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~---~~f~~P~~~~~~~---~~~yYsfd~G~--v~fI~Ldt~~~~~ 344 (580)
.+.|+.+ .+-++.+.+||++.... ..+.... ..-.++....+.. ...+..++.++ +.|+.+.+.....
T Consensus 70 ~~~L~~~--G~d~~tlaNNH~fD~G~--~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~ 145 (239)
T cd07381 70 ADALKAA--GFDVVSLANNHTLDYGE--EGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGI 145 (239)
T ss_pred HHHHHHh--CCCEEEcccccccccch--HHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCC
Confidence 3444433 55566666699986432 2222222 2223443222211 13456667777 4555554322110
Q ss_pred ----------CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCc
Q 008029 345 ----------STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAY 414 (580)
Q Consensus 345 ----------~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~y 414 (580)
......+-+++.+++++.+ ...+|++.|-..-.... .......+...+.+.++|+|+.||.|..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~-----p~~~~~~la~~l~~~G~D~IiG~H~Hv~ 219 (239)
T cd07381 146 PLAAGARPGGVNPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYY-----PTPEQRELARALIDAGADLVIGHHPHVL 219 (239)
T ss_pred cCcccCCccccCccCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCC-----CCHHHHHHHHHHHHCCCCEEEcCCCCcC
Confidence 0111134456666665433 78999999965422111 1112335555556679999999999986
Q ss_pred eeE
Q 008029 415 ERM 417 (580)
Q Consensus 415 eR~ 417 (580)
+-.
T Consensus 220 q~~ 222 (239)
T cd07381 220 QGI 222 (239)
T ss_pred CCe
Confidence 543
No 106
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=95.81 E-value=0.011 Score=58.82 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=23.8
Q ss_pred EEEcccCCCCCh-HHHHHHHHHC--------CCCEEEEccccccc
Q 008029 203 AVIGDLGLTSNS-STTVDHLIQN--------DPSLILMVGDLTYA 238 (580)
Q Consensus 203 av~gD~g~~~~~-~~~l~~i~~~--------~pDfvl~~GDl~Y~ 238 (580)
.++||.|..... .+.++++... ..|.++++||+++.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDR 46 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDR 46 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCC
Confidence 589999986433 2334443211 35899999999964
No 107
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=95.55 E-value=0.2 Score=50.43 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=90.9
Q ss_pred EEEcccCCCCChH---HHHHHHHH-CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHhhhh
Q 008029 203 AVIGDLGLTSNSS---TTVDHLIQ-NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRFMEP 278 (580)
Q Consensus 203 av~gD~g~~~~~~---~~l~~i~~-~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~l~~ 278 (580)
+++||.=....-. ..+..+.+ .++||||..|.++-. |.|.. ....+ +++
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~-------G~Git---------------~~~~~---~L~-- 53 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAG-------GFGIT---------------PKIAE---ELF-- 53 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTT-------TSS-----------------HHHHH---HHH--
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCC-------CCCCC---------------HHHHH---HHH--
Confidence 3567764332222 22333433 489999999999843 22210 11112 222
Q ss_pred hccCCCeEEecCCCCCCCCcccccHHHHHhh---cCCCCCCC-CCCCcceEEEEeCcEEEEEEcC--cccCCCcHHHHHH
Q 008029 279 LTSRVPMMVIEGNHEIEPQVAGITFKSYLTR---FAVPSEES-GSNSNFYYSFNAGGVHFIMLGA--YVDYNSTGAQYAW 352 (580)
Q Consensus 279 l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~---f~~P~~~~-~~~~~~yYsfd~G~v~fI~Ldt--~~~~~~~~~Q~~W 352 (580)
...+-+ .+.|||=+.. +....|... .--|.|-+ +..+.-|..++.++.++-+++- +........-+.-
T Consensus 54 -~~GvDv-iT~GNH~wdk----kei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~ 127 (253)
T PF13277_consen 54 -KAGVDV-ITMGNHIWDK----KEIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRA 127 (253)
T ss_dssp -HHT-SE-EE--TTTTSS----TTHHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHH
T ss_pred -hcCCCE-EecCcccccC----cHHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHH
Confidence 123443 5689998853 233334332 33455433 2456788899999877666653 3333333344555
Q ss_pred HHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcEE
Q 008029 353 LKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPVY 432 (580)
Q Consensus 353 Le~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vy 432 (580)
+++.|++. +.+++.+||=+|.=. ... +.-.-.+.+-+|.+|+--|+|.-. .+..+-|+|+.|
T Consensus 128 ~d~~l~~l-~~~~~~iiVDFHAEa-----------TSE-K~A~g~~lDGrvsaV~GTHTHVqT-----aDerILp~GTaY 189 (253)
T PF13277_consen 128 ADRLLEEL-KEETDIIIVDFHAEA-----------TSE-KQAMGWYLDGRVSAVVGTHTHVQT-----ADERILPGGTAY 189 (253)
T ss_dssp HHHHHHH------SEEEEEEE-S------------HHH-HHHHHHHHBTTBSEEEEESSSS-B-----S--EE-TTS-EE
T ss_pred HHHHHHhc-cccCCEEEEEeecCc-----------HHH-HHHHHHHhCCcEEEEEeCCCCccC-----chhhccCCCCEE
Confidence 66666664 356788999999631 111 222345667799999999999632 222224789999
Q ss_pred EEe-CCCCccc
Q 008029 433 ITV-GDGGNIE 442 (580)
Q Consensus 433 Iv~-G~gG~~e 442 (580)
|+- |.-|...
T Consensus 190 iTDvGMtG~~d 200 (253)
T PF13277_consen 190 ITDVGMTGPYD 200 (253)
T ss_dssp ES---EBEESS
T ss_pred EecCccccCcc
Confidence 953 6666653
No 108
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=95.48 E-value=0.017 Score=58.81 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=24.9
Q ss_pred EEEcccCCCCCh-HHHHHHHHH-CCCCEEEEccccccc
Q 008029 203 AVIGDLGLTSNS-STTVDHLIQ-NDPSLILMVGDLTYA 238 (580)
Q Consensus 203 av~gD~g~~~~~-~~~l~~i~~-~~pDfvl~~GDl~Y~ 238 (580)
.++||+|..... .++++++.. .+.|.++++||+++.
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdR 39 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNR 39 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCC
Confidence 589999986433 334444432 257999999999964
No 109
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=95.47 E-value=0.016 Score=57.20 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=23.9
Q ss_pred EEcccCCCCCh-HHHHHHHHHCCCCEEEEccccccc
Q 008029 204 VIGDLGLTSNS-STTVDHLIQNDPSLILMVGDLTYA 238 (580)
Q Consensus 204 v~gD~g~~~~~-~~~l~~i~~~~pDfvl~~GDl~Y~ 238 (580)
++||+|..... .++++.+.....|.++++||+++.
T Consensus 2 ~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdr 37 (225)
T cd00144 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDR 37 (225)
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCC
Confidence 78999975332 233333333578999999999964
No 110
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=95.31 E-value=0.027 Score=58.03 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=26.2
Q ss_pred EEEEEcccCCCCCh-HHHHHHHHHC------CCCEEEEccccccc
Q 008029 201 RIAVIGDLGLTSNS-STTVDHLIQN------DPSLILMVGDLTYA 238 (580)
Q Consensus 201 rfav~gD~g~~~~~-~~~l~~i~~~------~pDfvl~~GDl~Y~ 238 (580)
++.++||.|..... ..+++.+.+. ..+.+|++||+++.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDR 47 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDR 47 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCC
Confidence 68999999987543 3344444322 35689999999964
No 111
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=95.24 E-value=0.51 Score=47.10 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=104.1
Q ss_pred eEEEEEcccCCCCChHHHHH---HHH-HCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHHHHHHHh
Q 008029 200 HRIAVIGDLGLTSNSSTTVD---HLI-QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRWDGWGRF 275 (580)
Q Consensus 200 ~rfav~gD~g~~~~~~~~l~---~i~-~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~wd~~~~~ 275 (580)
+|++++||+=....-..+-+ .+. +.++||+|..|-++-. |.|. -|+-+.++
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~-------G~Gi------------------t~k~y~~l 55 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAG-------GFGI------------------TEKIYKEL 55 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccC-------CcCC------------------CHHHHHHH
Confidence 58999999866544333333 333 3489999999998832 2221 12333333
Q ss_pred hhhhccCCCeEEecCCCCCCCCcccccHHHHHhhcCCCCCCCC-CCCcceEEEEeCcEEEEE--EcCcccCC-CcHHHHH
Q 008029 276 MEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLTRFAVPSEESG-SNSNFYYSFNAGGVHFIM--LGAYVDYN-STGAQYA 351 (580)
Q Consensus 276 l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~~f~~P~~~~~-~~~~~yYsfd~G~v~fI~--Ldt~~~~~-~~~~Q~~ 351 (580)
++ +.+- +++.|||=+.... -..|..-..++--|.|-+. ..+.-|+-|...+..+.+ |-...... .-..-.+
T Consensus 56 ~~---~G~d-viT~GNH~wd~~e-i~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~ 130 (266)
T COG1692 56 LE---AGAD-VITLGNHTWDQKE-ILDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFK 130 (266)
T ss_pred HH---hCCC-EEecccccccchH-HHHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHH
Confidence 32 2333 4678999875221 1111111223334444322 234456666666544444 33333222 1333455
Q ss_pred HHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcE
Q 008029 352 WLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPV 431 (580)
Q Consensus 352 WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~v 431 (580)
=+++.|.+.+ .+++.+||-+|.-.-+ +. .+| -++.+-+|.+|+-=|+|.-.--. .+-++|+.
T Consensus 131 ~~d~l~~~~~-~~~~~iiVDFHAEtTS-------EK----~a~-g~yldGrvsavvGTHTHV~TaD~-----rIL~~GTa 192 (266)
T COG1692 131 AADKLLDEIK-LGTDLIIVDFHAETTS-------EK----NAF-GWYLDGRVSAVVGTHTHVPTADE-----RILPKGTA 192 (266)
T ss_pred HHHHHHHhCc-cCCceEEEEccccchh-------hh----hhh-heEEcCeEEEEEeccCccccccc-----eecCCCcE
Confidence 5667777654 4567899999974221 11 111 23345578999999999643322 22478999
Q ss_pred EEEe-CCCCc
Q 008029 432 YITV-GDGGN 440 (580)
Q Consensus 432 yIv~-G~gG~ 440 (580)
||+- |.-|.
T Consensus 193 yiTDvGMtG~ 202 (266)
T COG1692 193 YITDVGMTGP 202 (266)
T ss_pred EEecCccccc
Confidence 9863 54444
No 112
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.17 E-value=0.49 Score=47.47 Aligned_cols=135 Identities=12% Similarity=0.175 Sum_probs=68.0
Q ss_pred HHhhhhhccCCCeEEecCCCCCCCCcccccHHHHHh---hcCCCCCCCCCC---CcceEEEEeCcEE--EEEEcCccc--
Q 008029 273 GRFMEPLTSRVPMMVIEGNHEIEPQVAGITFKSYLT---RFAVPSEESGSN---SNFYYSFNAGGVH--FIMLGAYVD-- 342 (580)
Q Consensus 273 ~~~l~~l~~~vP~~~v~GNHD~~~~~~~~~f~~y~~---~f~~P~~~~~~~---~~~yYsfd~G~v~--fI~Ldt~~~-- 342 (580)
.+.|+.+ .+-++.+-+|||+.... +.+..... ...++....+.. ...|..++.++++ |+.+-+...
T Consensus 66 ~~~l~~~--G~d~~~laNNH~fD~G~--~gl~~t~~~l~~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~~~~~ 141 (239)
T smart00854 66 AAALKAA--GFDVVSLANNHSLDYGE--EGLLDTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNNG 141 (239)
T ss_pred HHHHHHh--CCCEEEeccCcccccch--HHHHHHHHHHHHCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcCCCCC
Confidence 3444443 45555555599996442 22222222 223443222111 1345667788755 444432211
Q ss_pred CC-----C-----cHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEcccc
Q 008029 343 YN-----S-----TGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVH 412 (580)
Q Consensus 343 ~~-----~-----~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H 412 (580)
+. . .....+=+++.+++++. +...+|++.|--.-..... ... ...+..-+.+.++|+|+.||.|
T Consensus 142 ~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~-~~~~A~~l~~~G~DvIiG~H~H 215 (239)
T smart00854 142 WAASKDRPGVALLPDLDREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDE-QRELAHALIDAGADVVIGHHPH 215 (239)
T ss_pred cccCCCCCCeeecCcCCHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHH-HHHHHHHHHHcCCCEEEcCCCC
Confidence 10 0 00112334555555543 4789999999764322111 111 2344444555799999999999
Q ss_pred CceeE
Q 008029 413 AYERM 417 (580)
Q Consensus 413 ~yeR~ 417 (580)
..+..
T Consensus 216 ~~~~~ 220 (239)
T smart00854 216 VLQPI 220 (239)
T ss_pred cCCce
Confidence 87644
No 113
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=95.14 E-value=0.026 Score=57.85 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=27.1
Q ss_pred EEEEEcccCCCCCh-HHHHHHHH-HCCCCEEEEccccccc
Q 008029 201 RIAVIGDLGLTSNS-STTVDHLI-QNDPSLILMVGDLTYA 238 (580)
Q Consensus 201 rfav~gD~g~~~~~-~~~l~~i~-~~~pDfvl~~GDl~Y~ 238 (580)
++.++||+|..... .+.++++. +...|-++++||+++.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdR 41 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVAR 41 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCC
Confidence 46799999986543 34555553 2356899999999964
No 114
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=94.93 E-value=0.061 Score=53.63 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=46.2
Q ss_pred eEEEEEcccCCCCCh--------------H---HHHHH-HHHCCCCEEEEcccccccccccccCCCCCcccccCCCCCcc
Q 008029 200 HRIAVIGDLGLTSNS--------------S---TTVDH-LIQNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPI 261 (580)
Q Consensus 200 ~rfav~gD~g~~~~~--------------~---~~l~~-i~~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~ 261 (580)
-+.++++|+|.+... . ..+++ +.+.+|+-++.+||+-.+-..
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~-------------------- 79 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGK-------------------- 79 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCc--------------------
Confidence 367999999998542 1 12332 235699999999999864210
Q ss_pred ccccHHHHHHHHHhhhhhccCCCeEEecCCCCCC
Q 008029 262 RETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIE 295 (580)
Q Consensus 262 ~e~y~~~wd~~~~~l~~l~~~vP~~~v~GNHD~~ 295 (580)
.....|+....+++.+... -++++.||||-.
T Consensus 80 --~~~~e~~~~~~f~~~~~~~-evi~i~GNHD~~ 110 (235)
T COG1407 80 --SLRQEKEEVREFLELLDER-EVIIIRGNHDNG 110 (235)
T ss_pred --cccccHHHHHHHHHHhccC-cEEEEeccCCCc
Confidence 0112345544555544333 599999999974
No 115
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=94.18 E-value=0.099 Score=57.21 Aligned_cols=41 Identities=37% Similarity=0.396 Sum_probs=32.3
Q ss_pred CeEEEEEcccCCCCC---------hHHHHHHH----HHCCCCEEEEcccccccc
Q 008029 199 PHRIAVIGDLGLTSN---------SSTTVDHL----IQNDPSLILMVGDLTYAN 239 (580)
Q Consensus 199 ~~rfav~gD~g~~~~---------~~~~l~~i----~~~~pDfvl~~GDl~Y~d 239 (580)
.+||++..|.|.++. +..+++.| .+++.||||..||++..+
T Consensus 13 tirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeN 66 (646)
T KOG2310|consen 13 TIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHEN 66 (646)
T ss_pred ceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccC
Confidence 699999999999864 23444444 357999999999999875
No 116
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=93.29 E-value=1.1 Score=45.33 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=72.6
Q ss_pred CCCeEEecCCCCCCCCcccccHH---HHHhhcCCCCCCCCC---CCcceEEEEeCcEEEEEEcCcccC---C--------
Q 008029 282 RVPMMVIEGNHEIEPQVAGITFK---SYLTRFAVPSEESGS---NSNFYYSFNAGGVHFIMLGAYVDY---N-------- 344 (580)
Q Consensus 282 ~vP~~~v~GNHD~~~~~~~~~f~---~y~~~f~~P~~~~~~---~~~~yYsfd~G~v~fI~Ldt~~~~---~-------- 344 (580)
.+-++.+.-||.+..... .+. .......++..+.+. .......++.+++++-++...... .
T Consensus 75 G~d~vslANNH~~D~G~~--gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~ 152 (250)
T PF09587_consen 75 GFDVVSLANNHIFDYGEE--GLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPY 152 (250)
T ss_pred CCCEEEecCCCCccccHH--HHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCccccccccc
Confidence 566777888998754322 221 222233333322211 123345667777666555421110 0
Q ss_pred ------------CcHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhcCCcEEEEcccc
Q 008029 345 ------------STGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVH 412 (580)
Q Consensus 345 ------------~~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky~VdlvlsGH~H 412 (580)
....+.+.+++++++++ ++..++||+.|--.-.... .. ....++...|.+.++|+|+.+|.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~----p~-~~q~~~a~~lidaGaDiIiG~HpH 226 (250)
T PF09587_consen 153 GFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENY----PT-PEQRELARALIDAGADIIIGHHPH 226 (250)
T ss_pred cccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC----CC-HHHHHHHHHHHHcCCCEEEeCCCC
Confidence 01234588888888876 5688999999974221111 11 223455556666899999999999
Q ss_pred CceeE
Q 008029 413 AYERM 417 (580)
Q Consensus 413 ~yeR~ 417 (580)
..+-.
T Consensus 227 v~q~~ 231 (250)
T PF09587_consen 227 VIQPV 231 (250)
T ss_pred cccce
Confidence 86654
No 117
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=91.94 E-value=0.21 Score=52.19 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCcEEEEcccc
Q 008029 391 RQEMEALLYQYGVDIVFSGHVH 412 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H 412 (580)
.+++.+.|++.+.++++=||.=
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~ 243 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEA 243 (305)
T ss_pred HHHHHHHHHHcCCeEEEEeccc
Confidence 4678899999999999999984
No 118
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=91.41 E-value=0.29 Score=51.39 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCcEEEEccccC
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.+++...|++.+.++++=||.-.
T Consensus 253 ~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 253 PDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 56788999999999999999843
No 119
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=91.01 E-value=0.31 Score=50.06 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCcEEEEccc
Q 008029 391 RQEMEALLYQYGVDIVFSGHV 411 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~ 411 (580)
.+++.+.|+++++++++-||.
T Consensus 200 ~~~~~~Fl~~n~l~~iiR~He 220 (271)
T smart00156 200 PDAVDEFLKKNNLKLIIRAHQ 220 (271)
T ss_pred HHHHHHHHHHCCCeEEEecCc
Confidence 468889999999999999997
No 120
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=90.98 E-value=1.3 Score=51.14 Aligned_cols=37 Identities=35% Similarity=0.613 Sum_probs=31.1
Q ss_pred EEEEeCCCCCCCEEEEEEEeCCC---CCccceEEEEcCCC
Q 008029 156 HHVKIDGLDPGTKYYYKCGDSKI---PAMSAEHVFETLPL 192 (580)
Q Consensus 156 h~v~l~gL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~p~ 192 (580)
..|+|+||+|+|.|-+||..... +..|....|.|.+.
T Consensus 498 ~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 498 TTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred ceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 57899999999999999966432 36799999999986
No 121
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=90.79 E-value=1.3 Score=49.58 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHhccCCCCCeEEEEeCCCCccCCCCCcchhHHHHHHHHHHHHhc-CCcE-EEEccccCc
Q 008029 346 TGAQYAWLKEDLHKLDRTVTPWLAAAWHPPWYNSYSSHYQEFECMRQEMEALLYQY-GVDI-VFSGHVHAY 414 (580)
Q Consensus 346 ~~~Q~~WLe~~L~~~~r~~~pwvIv~~H~P~y~s~~~~~~~~~~~r~~l~~Ll~ky-~Vdl-vlsGH~H~y 414 (580)
.-.|.+|-.+.++. .+..-+|++.|.|.-... +. ...+..+...+ ++++ ||-||.|..
T Consensus 210 ei~~~~~~~~m~~~---~~idlii~lgH~~~~~~~-----e~---~~~~~~ir~~~p~t~IqviGGHshir 269 (602)
T KOG4419|consen 210 EITQSEWEQDMVNT---TDIDLIIALGHSPVRDDD-----EW---KSLHAEIRKVHPNTPIQVIGGHSHIR 269 (602)
T ss_pred HHhccchHHHHhhc---cCccEEEEecccccccch-----hh---hhHHHHHhhhCCCCceEEECchhhhh
Confidence 35567777777766 456679999999854321 11 11344444444 6788 999999974
No 122
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=90.10 E-value=0.35 Score=50.02 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCcEEEEccccC
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.+++.+.|++.+.++++=||.-.
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He~~ 236 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQLV 236 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCccc
Confidence 56888999999999999999853
No 123
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=89.60 E-value=0.39 Score=49.88 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCcEEEEccccC
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.+++...|++.+.++++=||.-.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAHQVV 244 (293)
T ss_pred HHHHHHHHHHcCCeEEEECCccc
Confidence 46888999999999999999854
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=89.24 E-value=0.52 Score=49.21 Aligned_cols=23 Identities=4% Similarity=0.079 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCcEEEEccccC
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.+++++.+++.+.++++=||.-.
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46888999999999999999853
No 125
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=89.04 E-value=1.4 Score=52.77 Aligned_cols=91 Identities=25% Similarity=0.302 Sum_probs=55.7
Q ss_pred CCCCCCceEEEEeCCCCcEEEEEEeCCCCCCCCCCCCCCCCCCcE----EEEcccCCCcc---eEEeeEEEEEeeecccC
Q 008029 73 VTSNFPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASD----VWYGKQSGKYT---SKRGGNATVYSQLYPFK 145 (580)
Q Consensus 73 ~~~~~P~qi~la~~~~~sm~V~W~T~~~~~g~~~~~~~p~~~~~~----V~yg~~~~~~~---~~a~g~~~~y~~~~p~~ 145 (580)
.++..|+.|.|....+++++|+|.+..... ..... ++|++.+.... ..+.|.
T Consensus 614 ~PsaPP~Nl~lev~sStsVrVsW~pP~~~t----------~ng~itgYkIRy~~~~~~~~~~~t~v~~n----------- 672 (1381)
T KOG4221|consen 614 VPSAPPQNLSLEVVSSTSVRVSWLPPPSET----------QNGQITGYKIRYRKLSREDEVNETVVKGN----------- 672 (1381)
T ss_pred CCCCCCcceEEEecCCCeEEEEccCCCccc----------ccceEEEEEEEecccCcccccceeecccc-----------
Confidence 566678889999888999999999754321 01122 34443322211 111111
Q ss_pred CccccccccEEEEEeCCCCCCCEEEEEEEeCCC---CCccceEEEEcCCCC
Q 008029 146 GLLNYTSGIIHHVKIDGLDPGTKYYYKCGDSKI---PAMSAEHVFETLPLP 193 (580)
Q Consensus 146 g~~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~p~~ 193 (580)
.+.| .+++|+|+|.|.+||..... +..|++.++.|+-..
T Consensus 673 -------~~~~--l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d 714 (1381)
T KOG4221|consen 673 -------TTQY--LFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESD 714 (1381)
T ss_pred -------hhhh--HhhcCCCCceEEEEEEEeccCCCCCcccceeccCcccc
Confidence 1112 35789999999999966442 356889999996433
No 126
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=88.19 E-value=0.58 Score=49.15 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCcEEEEccccC
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.+++.+.|++++.++++=||.-.
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~Hq~v 253 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAHQVV 253 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcCccc
Confidence 56888999999999999999854
No 127
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=88.17 E-value=0.74 Score=49.39 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCcEEEEccc
Q 008029 391 RQEMEALLYQYGVDIVFSGHV 411 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~ 411 (580)
.+.+...|++++.++++=||.
T Consensus 273 ~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred HHHHHHHHHHcCCcEEEECCC
Confidence 568889999999999999998
No 128
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=88.04 E-value=4.4 Score=31.96 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCCCEEEEEEEeCC
Q 008029 155 IHHVKIDGLDPGTKYYYKCGDSK 177 (580)
Q Consensus 155 ~h~v~l~gL~P~T~Y~Yrvg~~~ 177 (580)
..++.+.+|.|+++|.++|..-.
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred ccEEEEccccCCCEEEEEEEEEC
Confidence 36778899999999999996643
No 129
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=87.22 E-value=0.7 Score=48.03 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCcEEEEccccC
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.+++...+++.+.++++=||.-.
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq~~ 246 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQVM 246 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCccc
Confidence 46888999999999999999843
No 130
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.88 E-value=4.7 Score=37.33 Aligned_cols=41 Identities=27% Similarity=0.552 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCcEEEEccccCceeEeeccccccCCCCcEEEEeCCCCc
Q 008029 392 QEMEALLYQYGVDIVFSGHVHAYERMNRVYNYTLDACGPVYITVGDGGN 440 (580)
Q Consensus 392 ~~l~~Ll~ky~VdlvlsGH~H~yeR~~pv~n~~~~~~G~vyIv~G~gG~ 440 (580)
+.|.-|-++.+||+.+.||+|.++... -+|-.||..|++-.
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Aye--------~eg~ffvnPGSaTG 137 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAYE--------HEGKFFVNPGSATG 137 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEEE--------eCCcEEeCCCcccC
Confidence 456667778899999999999988764 46777887776543
No 131
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=83.70 E-value=1.7 Score=45.60 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCcEEEEccc
Q 008029 391 RQEMEALLYQYGVDIVFSGHV 411 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~ 411 (580)
.+++...+++.+.++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 467888999999999999997
No 132
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=82.79 E-value=2.1 Score=45.00 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCcEEEEccccC
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.+++.+.|++.+.++++-||.-.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 46788999999999999999853
No 133
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=81.98 E-value=1.1 Score=43.72 Aligned_cols=83 Identities=13% Similarity=0.324 Sum_probs=43.2
Q ss_pred EEEEcccCCCCCh--HHHHHHHH-----HCCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccHHHH---HH
Q 008029 202 IAVIGDLGLTSNS--STTVDHLI-----QNDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQPRW---DG 271 (580)
Q Consensus 202 fav~gD~g~~~~~--~~~l~~i~-----~~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~~~w---d~ 271 (580)
|++++|.+...+. .+.++++. +.+|+.+|++|+++.........+. ....+.... ..
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 67 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGS-------------VPDSYSFEEDFLKE 67 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT----------------HHCCHHHHHHHH
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCcccccccccc-------------ccccccccHHHHHH
Confidence 6788999887432 23344433 4579999999999975322111000 000111111 22
Q ss_pred HHHhhhhhccCCCeEEecCCCCCCCC
Q 008029 272 WGRFMEPLTSRVPMMVIEGNHEIEPQ 297 (580)
Q Consensus 272 ~~~~l~~l~~~vP~~~v~GNHD~~~~ 297 (580)
..+.+..+...++++.+||+||....
T Consensus 68 ~~~~~~~i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 68 LDSFLESILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHHHHCCCHCCSEEEEE--TTCTT-S
T ss_pred HHHHHhhcccccEEEEeCCCcccccc
Confidence 23445566678999999999998644
No 134
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=80.06 E-value=14 Score=28.01 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCCCEEEEEEEeCC
Q 008029 155 IHHVKIDGLDPGTKYYYKCGDSK 177 (580)
Q Consensus 155 ~h~v~l~gL~P~T~Y~Yrvg~~~ 177 (580)
-+...|.+|+|++.|.++|..-.
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEEc
Confidence 36788999999999999997543
No 135
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=78.08 E-value=23 Score=36.24 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.0
Q ss_pred eEEEEEcccCCCCChHHHHHHHH-HCCCCEEEEcccccc
Q 008029 200 HRIAVIGDLGLTSNSSTTVDHLI-QNDPSLILMVGDLTY 237 (580)
Q Consensus 200 ~rfav~gD~g~~~~~~~~l~~i~-~~~pDfvl~~GDl~Y 237 (580)
.||+.++|.|.-... +. -..-|+++++||...
T Consensus 62 ~r~VcisdtH~~~~~------i~~~p~gDvlihagdfT~ 94 (305)
T KOG3947|consen 62 ARFVCISDTHELTFD------INDIPDGDVLIHAGDFTN 94 (305)
T ss_pred eEEEEecCcccccCc------cccCCCCceEEeccCCcc
Confidence 699999999964221 22 135589999999984
No 136
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=72.98 E-value=19 Score=43.37 Aligned_cols=94 Identities=22% Similarity=0.245 Sum_probs=54.1
Q ss_pred CCCceEEEEeCCCCcEEEEEEeCCCCCCCCCCCCCCCCCCcEEEEcccCCCcceEEeeEEEEEeeecccCCccccccccE
Q 008029 76 NFPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWYGKQSGKYTSKRGGNATVYSQLYPFKGLLNYTSGII 155 (580)
Q Consensus 76 ~~P~qi~la~~~~~sm~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~~~~~ 155 (580)
..|..+++---+.++|.|+|.......|.. ..=.|+|-...+.. +..... +..+..
T Consensus 821 ~ap~~~~~~~~s~s~~~v~W~~~~~~nG~l--------~gY~v~Y~~~~~~~-----~~~~~~-----------~i~~~~ 876 (1051)
T KOG3513|consen 821 VAPTKLSAKPLSSSEVNLSWKPPLWDNGKL--------TGYEVKYWKINEKE-----GSLSRV-----------QIAGNR 876 (1051)
T ss_pred CCCccceeecccCceEEEEecCcCccCCcc--------ceeEEEEEEcCCCc-----ccccce-----------eecCCc
Confidence 456777665555899999996543222211 23457777665443 111110 112344
Q ss_pred EEEEeCCCCCCCEEEEEEEeCCC---CCccceEEEEcCCCC
Q 008029 156 HHVKIDGLDPGTKYYYKCGDSKI---PAMSAEHVFETLPLP 193 (580)
Q Consensus 156 h~v~l~gL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~p~~ 193 (580)
-.++|+||+|+|.|++.|..-+. +..|....-.|.+.+
T Consensus 877 ~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~p 917 (1051)
T KOG3513|consen 877 TSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAP 917 (1051)
T ss_pred ceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCC
Confidence 67789999999999998865432 123444444555443
No 137
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=68.49 E-value=20 Score=41.99 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=70.9
Q ss_pred CCCceEEEEeCC--CCcEEEEEEeCCCCCCCCCCCCCCCCCCcEEEEcccCCCcceE-----EeeEE-EEEeeecccCCc
Q 008029 76 NFPEQIALAISS--PTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWYGKQSGKYTSK-----RGGNA-TVYSQLYPFKGL 147 (580)
Q Consensus 76 ~~P~qi~la~~~--~~sm~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~-----a~g~~-~~y~~~~p~~g~ 147 (580)
.++.-++++... .+++.++|....+..-. + -..-.+.|.+.+..-... |-|.. ......+|-++.
T Consensus 487 Ce~~~l~~~~~~~~~dsi~lrW~~~~~~d~r--~-----llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~ 559 (1025)
T KOG4258|consen 487 CEDLVLQFSSTVTSADSILLRWERYQPPDMR--D-----LLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLI 559 (1025)
T ss_pred cccceeeeeeEEeecceeEEEecccCCcchh--h-----hheeeEeeccCCccccceecCccccccCcceEEeccCCcCC
Confidence 355666666655 99999999976543100 0 123456777766432211 22211 111111222332
Q ss_pred cccccccEEEEEeCCCCCCCEEEEEEEeCCC-------CCccceEEEEcCCCCCCCCCCeEEEEEcccC
Q 008029 148 LNYTSGIIHHVKIDGLDPGTKYYYKCGDSKI-------PAMSAEHVFETLPLPSPTSYPHRIAVIGDLG 209 (580)
Q Consensus 148 ~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~~-------~~~S~~~~F~T~p~~~~~~~~~rfav~gD~g 209 (580)
.+ ++..--..|.||+|.|.|-|-|..-.. .+.|++..++|.|...+ -|+.++.-++.-
T Consensus 560 p~--~~~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps--pPl~~ls~snsS 624 (1025)
T KOG4258|consen 560 PN--DGTHPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS--PPLDVLSKSNSS 624 (1025)
T ss_pred Cc--cccccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC--CcchhhhccCcc
Confidence 22 233336889999999999998855421 26899999999986543 366766666543
No 138
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=60.73 E-value=92 Score=38.28 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=29.2
Q ss_pred EEEEEeCCCCCCCEEEEEEEeCCCC---CccceEEEEcCC
Q 008029 155 IHHVKIDGLDPGTKYYYKCGDSKIP---AMSAEHVFETLP 191 (580)
Q Consensus 155 ~h~v~l~gL~P~T~Y~Yrvg~~~~~---~~S~~~~F~T~p 191 (580)
-++.+|+||+|.|.|.|||...+.. .-|+...|+|+.
T Consensus 573 ~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 573 ATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred ccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 4778899999999999999765532 456788888864
No 139
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=59.04 E-value=55 Score=33.96 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=50.9
Q ss_pred CeEEEEEcccCCCCChHHHHHHHH---H---------CCCCEEEEcccccccccccccCCCCCcccccCCCCCccccccH
Q 008029 199 PHRIAVIGDLGLTSNSSTTVDHLI---Q---------NDPSLILMVGDLTYANQYLTTGGKAASCYSCAFPDAPIRETYQ 266 (580)
Q Consensus 199 ~~rfav~gD~g~~~~~~~~l~~i~---~---------~~pDfvl~~GDl~Y~d~~~~~GG~~~~c~~~~~~~~p~~e~y~ 266 (580)
..+|+++||.++.. ..+++++. + ..|-.+|+.|+++..-.. .+ ....+.|+
T Consensus 27 ~~~~VilSDV~LD~--p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~--~~-------------~~~~~~yk 89 (291)
T PTZ00235 27 RHNWIIMHDVYLDS--PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFD--YN-------------RNFHKVYI 89 (291)
T ss_pred ceEEEEEEeeccCC--HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCccc--CC-------------CCchHHHH
Confidence 46899999999863 33333332 1 138899999999843210 00 01233466
Q ss_pred HHHHHHHHh-h---hhhccCCCeEEecCCCCCC
Q 008029 267 PRWDGWGRF-M---EPLTSRVPMMVIEGNHEIE 295 (580)
Q Consensus 267 ~~wd~~~~~-l---~~l~~~vP~~~v~GNHD~~ 295 (580)
..++.+... + ..|..+.-++.|||-.|-.
T Consensus 90 ~~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 90 KGFEKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHHHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 667776652 3 3456788899999999974
No 140
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=41.83 E-value=29 Score=32.56 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=23.5
Q ss_pred EEEeCCCCCCCEEEE--EEEeCCCCCccceEEEEcCCCC
Q 008029 157 HVKIDGLDPGTKYYY--KCGDSKIPAMSAEHVFETLPLP 193 (580)
Q Consensus 157 ~v~l~gL~P~T~Y~Y--rvg~~~~~~~S~~~~F~T~p~~ 193 (580)
.=.+++|.|||+||. .|..+....-|.+..-.|.|..
T Consensus 103 aYqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~~ 141 (184)
T PF07353_consen 103 AYQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNRK 141 (184)
T ss_pred eEEeeccCCCcEEEEEEEEecCccceecceecccccccc
Confidence 346799999999975 4554442333455666666644
No 141
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=40.15 E-value=36 Score=36.06 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCcEEEEcccc
Q 008029 391 RQEMEALLYQYGVDIVFSGHVH 412 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H 412 (580)
.+.+++++++.++|+++-+|.=
T Consensus 233 ~~~v~~f~~~~~ldlivRaHqv 254 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQV 254 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCcc
Confidence 4678888999999999999964
No 142
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=35.43 E-value=46 Score=33.63 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=20.6
Q ss_pred EEEEcccCCCCChHHHHHHHHH--CCC-CEEEEccccccc
Q 008029 202 IAVIGDLGLTSNSSTTVDHLIQ--NDP-SLILMVGDLTYA 238 (580)
Q Consensus 202 fav~gD~g~~~~~~~~l~~i~~--~~p-Dfvl~~GDl~Y~ 238 (580)
+.+.||+|.. ....++-+.- .-| .=-+++||+++.
T Consensus 45 vtvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVDR 82 (303)
T KOG0372|consen 45 VTVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVDR 82 (303)
T ss_pred cEEeecccch--HHHHHHHHHhCCCCCCCceEeecchhcc
Confidence 4689999975 2333332221 112 356789999964
No 143
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.36 E-value=65 Score=28.32 Aligned_cols=23 Identities=39% Similarity=0.793 Sum_probs=20.2
Q ss_pred ccEEEEEeCCCCCCCEEEEEEEe
Q 008029 153 GIIHHVKIDGLDPGTKYYYKCGD 175 (580)
Q Consensus 153 ~~~h~v~l~gL~P~T~Y~Yrvg~ 175 (580)
+-++++.|.++.+|+.|-|||..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999973
No 144
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.97 E-value=64 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.0
Q ss_pred ccEEEEEeCCCCCCCEEEEEEEe
Q 008029 153 GIIHHVKIDGLDPGTKYYYKCGD 175 (580)
Q Consensus 153 ~~~h~v~l~gL~P~T~Y~Yrvg~ 175 (580)
+-+.++.+.++.+|+.|.|+|..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 35688999999999999999964
No 145
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.65 E-value=71 Score=26.27 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.1
Q ss_pred cEEEEEeCCCCCCCEEEEEEEe
Q 008029 154 IIHHVKIDGLDPGTKYYYKCGD 175 (580)
Q Consensus 154 ~~h~v~l~gL~P~T~Y~Yrvg~ 175 (580)
-++++.+.++ +|..|.|+|..
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~~ 60 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLDD 60 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEECC
Confidence 4678899999 99999999973
No 146
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.36 E-value=71 Score=27.10 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCCCCEEEEEEEeC
Q 008029 153 GIIHHVKIDGLDPGTKYYYKCGDS 176 (580)
Q Consensus 153 ~~~h~v~l~gL~P~T~Y~Yrvg~~ 176 (580)
+-++++.+.++.+|+.|.|+|...
T Consensus 46 ~gvw~~~v~~~~~g~~Y~y~i~~~ 69 (100)
T cd02860 46 NGVWSVTLDGDLEGYYYLYEVKVY 69 (100)
T ss_pred CCEEEEEeCCccCCcEEEEEEEEe
Confidence 457889999999999999999754
No 147
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=24.82 E-value=74 Score=26.93 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.6
Q ss_pred EEEEeCCCCCCCEEEEEEEe
Q 008029 156 HHVKIDGLDPGTKYYYKCGD 175 (580)
Q Consensus 156 h~v~l~gL~P~T~Y~Yrvg~ 175 (580)
-.+.|.+|+|+|.|..+|..
T Consensus 67 ~~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 67 SSVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEEES--TTSEEEEEEEE
T ss_pred CEEEEeCCCCCCCEEEEEEE
Confidence 45689999999999999976
No 148
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=24.71 E-value=2.8e+02 Score=33.89 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=53.0
Q ss_pred CCCceEEEEeCCCCcEEEEEEeCCCCCCCCCCCCCCCCCCcEEEEc----ccCCCcceEEeeEEEEEeeecccCCccccc
Q 008029 76 NFPEQIALAISSPTSMWVSWVSGDAQIGSNVTPLDPSTVASDVWYG----KQSGKYTSKRGGNATVYSQLYPFKGLLNYT 151 (580)
Q Consensus 76 ~~P~qi~la~~~~~sm~V~W~T~~~~~g~~~~~~~p~~~~~~V~yg----~~~~~~~~~a~g~~~~y~~~~p~~g~~~~~ 151 (580)
..|++|++.=-..+++.++|.-+... ..++..|- +.....+..+. + .| +. .
T Consensus 616 gpP~~v~~~~i~~t~~~lsW~~g~dn------------~SpI~~Y~iq~rt~~~~~W~~v~-~-------vp--~~---~ 670 (1051)
T KOG3513|consen 616 GPPPDVHVDDISDTTARLSWSPGSDN------------NSPIEKYTIQFRTPFPGKWKAVT-T-------VP--GN---I 670 (1051)
T ss_pred CCCCceeEeeeccceEEEEeecCCCC------------CCCceEEeEEecCCCCCcceEee-E-------CC--Cc---c
Confidence 35677777544589999999976421 13344443 33222333332 1 12 11 1
Q ss_pred cccEEEEEeCCCCCCCEEEEEEEeCCCCCc---c-ceEEEEcCCCC
Q 008029 152 SGIIHHVKIDGLDPGTKYYYKCGDSKIPAM---S-AEHVFETLPLP 193 (580)
Q Consensus 152 ~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~---S-~~~~F~T~p~~ 193 (580)
.|- +.+++-+|.|-..|.+||...+.-+. | +--..+|.++.
T Consensus 671 ~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~ 715 (1051)
T KOG3513|consen 671 TGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAA 715 (1051)
T ss_pred cCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCC
Confidence 234 67888999999999999977553221 1 12355676544
No 149
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=23.39 E-value=99 Score=31.56 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=21.9
Q ss_pred EEEEcccCCCCChHHHHHHH--HHCCCC-EEEEccccccc
Q 008029 202 IAVIGDLGLTSNSSTTVDHL--IQNDPS-LILMVGDLTYA 238 (580)
Q Consensus 202 fav~gD~g~~~~~~~~l~~i--~~~~pD-fvl~~GDl~Y~ 238 (580)
+.+.||.|... ...++-+ -...|| -.++.||.++.
T Consensus 62 vtvcGDvHGqf--~dl~ELfkiGG~~pdtnylfmGDyvdr 99 (319)
T KOG0371|consen 62 VTVCGDVHGQF--HDLIELFKIGGLAPDTNYLFMGDYVDR 99 (319)
T ss_pred eEEecCcchhH--HHHHHHHHccCCCCCcceeeeeeeccc
Confidence 56899999753 3333333 223565 35789999964
No 150
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=23.34 E-value=4e+02 Score=22.73 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCcEEEEccccC
Q 008029 391 RQEMEALLYQYGVDIVFSGHVHA 413 (580)
Q Consensus 391 r~~l~~Ll~ky~VdlvlsGH~H~ 413 (580)
.+.+.+..+++++|+++-|+.+.
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC
Confidence 46777888999999999888864
No 151
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=23.25 E-value=88 Score=33.30 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEcccCCCCChHHHHHHHH-HCCC--CEEEEccccccc
Q 008029 202 IAVIGDLGLTSNSSTTVDHLI-QNDP--SLILMVGDLTYA 238 (580)
Q Consensus 202 fav~gD~g~~~~~~~~l~~i~-~~~p--Dfvl~~GDl~Y~ 238 (580)
|-|.||+|... ...++-.. ...| ---+++||+++.
T Consensus 90 iTVCGDIHGQf--~DLmKLFEVGG~PA~t~YLFLGDYVDR 127 (517)
T KOG0375|consen 90 ITVCGDIHGQF--FDLMKLFEVGGSPANTRYLFLGDYVDR 127 (517)
T ss_pred eeEecccchHH--HHHHHHHHccCCcccceeEeecccccc
Confidence 56899999752 22332222 1233 245789999964
Done!