BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008030
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/439 (52%), Positives = 300/439 (68%), Gaps = 12/439 (2%)
Query: 114 KGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY 173
KGN V V+VM+PLD+V+++N + + A LR L AGV+GVM+DVWWGLVE P Y
Sbjct: 2 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAY 61
Query: 174 NWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQW 233
+W Y L E+ ++ GLK+QA+MSFHQCGGNVGD+V+IP+P+WV + +D D+ YTD
Sbjct: 62 DWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGH 121
Query: 234 GMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGEL 292
G RN EY++LG D P+ GR+ VQ Y+D+M +F++ KD L IV+I+VG+GPAGEL
Sbjct: 122 GTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGEL 181
Query: 293 RYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPED 352
RYPSYP+ +G W FPGIG F CYDKY+ + KAAA + G PEW P DAG YN+ PE
Sbjct: 182 RYPSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAAAVGHPEW--EFPNDAGQYNDTPER 238
Query: 353 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHY 412
TQFFR +NG + S G FFL+WYS L+ HG+RIL A +F V++++K+AG+HW Y
Sbjct: 239 TQFFR-DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWY 297
Query: 413 GSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLV 472
SHA ELTAGYYN RDGY IA+ML RH A NFTC EMRD EQP DA+ APE+LV
Sbjct: 298 KVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQPPDAMSAPEELV 357
Query: 473 KQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNP 525
+QV SA + + ++ ENALPRYD A+ ILR A S + ++ FTYLR++
Sbjct: 358 QQVLSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSN 417
Query: 526 HLFQPDNWRQFVAFVKKMN 544
L + N+ F FV +M+
Sbjct: 418 QLVEGQNYVNFKTFVDRMH 436
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/441 (50%), Positives = 296/441 (67%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + ++ +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/441 (50%), Positives = 296/441 (67%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + ++ +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 454 bits (1167), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/441 (50%), Positives = 295/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 295/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NF+C+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/441 (50%), Positives = 294/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 295/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAG+LRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 295/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AG+NALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 294/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NF C+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 294/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NF C+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 294/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI FTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 294/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GV +DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y LL++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/439 (51%), Positives = 297/439 (67%), Gaps = 12/439 (2%)
Query: 114 KGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY 173
KGN V V+VM+PLD+V+++N + + A LR L AGV+GVM+DVWWGLVE P Y
Sbjct: 6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAY 65
Query: 174 NWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQW 233
+W Y L E+ ++ GLK+QA+MSFHQCGGNVGD+V+IP+P+WV + +D D+ YTD
Sbjct: 66 DWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGH 125
Query: 234 GMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGEL 292
G RN EY++LG D P+ GR+ VQ Y+D+M +F++ K+ L IV+I+VG+GPAGE+
Sbjct: 126 GTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEM 185
Query: 293 RYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPED 352
RYPSYP+ +G W FPGIG F CYDKY+ + KAAA + G PEW P D G YN+ PE
Sbjct: 186 RYPSYPQSHG-WSFPGIGEFICYDKYLQADFKAAAAAVGHPEW--EFPNDVGQYNDTPER 242
Query: 353 TQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHY 412
TQFFR +NG + S G FFL+WYS L+ HG+RIL A +F V++++K++GIHW Y
Sbjct: 243 TQFFR-DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWY 301
Query: 413 GSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLV 472
SHA ELTAGYYN RDGY IA+ML RH A NFTC EMRD EQ A+ APE+LV
Sbjct: 302 KVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELV 361
Query: 473 KQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNP 525
+QV SA + + +A ENALPRYD A+ ILR A S + ++ FTYLR++
Sbjct: 362 QQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSN 421
Query: 526 HLFQPDNWRQFVAFVKKMN 544
L + N+ F FV +M+
Sbjct: 422 QLVEGQNYANFKTFVDRMH 440
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/441 (49%), Positives = 293/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y L ++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FP IG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPRIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/441 (49%), Positives = 293/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DVWWG++E P Y+W
Sbjct: 6 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 65
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y L ++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 66 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 125
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 126 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 185
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FP IG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 186 PSYPQSQG-WEFPRIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 242
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 243 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 301
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 302 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 361
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 362 VLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDL 421
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 422 LQKSNFNIFKKFVLKMHADQD 442
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/448 (49%), Positives = 302/448 (67%), Gaps = 13/448 (2%)
Query: 110 GLQEKGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQ 169
G+ GN V ++VM+PL V N K+ ++ L+ +K+ G +GVM+DVWWG++E
Sbjct: 5 GVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKG 64
Query: 170 PGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVY 229
P Y+W Y +L ++ K+ GLK+QA+MSFHQCGGNVGD+V IP+P+W+++ DK+ D+ Y
Sbjct: 65 PKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFY 124
Query: 230 TDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL--GDTIVEIQVGMG 287
T++ G RN EY+SLG D + +GRT ++ Y DFM +F+D D L GD IV+I+VG G
Sbjct: 125 TNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGD-IVDIEVGCG 183
Query: 288 PAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYN 347
AGELRYPSYPE G W FPGIG FQCYDKYM++ K A + AG +W G AG YN
Sbjct: 184 AAGELRYPSYPETQG-WVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPG-KGAGTYN 241
Query: 348 NWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAG 407
+ P+ T+FFR NG + + G+FFL+WYS L+ HG+++L A +F V I+ KV+G
Sbjct: 242 DTPDKTEFFRP-NGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSG 300
Query: 408 IHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCA 467
IHW Y SHA ELTAG+YN RDGY PIA+MLARH A NFTC+EMRD EQP +A A
Sbjct: 301 IHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSA 360
Query: 468 PEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQI---LRAASLDVDK----QMCAFTY 520
P++LV+QV S+ K ++ +AGENALPRYD A+ Q+ LR ++++ +M TY
Sbjct: 361 PQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTY 420
Query: 521 LRMNPHLFQPDNWRQFVAFVKKMNEGKD 548
LR++ L Q DN+ F FVKKM+ D
Sbjct: 421 LRLSDDLLQTDNFELFKKFVKKMHADLD 448
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/441 (49%), Positives = 293/441 (66%), Gaps = 12/441 (2%)
Query: 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 175
N VPV+VM+PL V + N + L L++AGV+GVM+DV WG++E P Y+W
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDW 69
Query: 176 GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGM 235
Y L ++ + GL +QA+MSFHQCGGNVGD V+IP+P+WV++ + + D+ YT++ G
Sbjct: 70 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 236 RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL-GDTIVEIQVGMGPAGELRY 294
RN EY+++G D P+ GRT ++ YSD+M++F++ D L I++I+VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQ 354
PSYP+ G W+FPGIG FQCYDKY+ + KAA AG PEW P DAG YN+ PE T
Sbjct: 190 PSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTG 246
Query: 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGS 414
FF K NG + + G+FFL+WYS LL+HG++IL A F VK+++KV+GIHW Y
Sbjct: 247 FF-KSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKV 305
Query: 415 RSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQ 474
+HA ELTAGYYN RDGY PIA+ML+RH AI NFTC+EMRD EQP DA P++LV+Q
Sbjct: 306 ENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQ 365
Query: 475 VASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDKQ------MCAFTYLRMNPHL 527
V S + + +AGENALPRYD A+ Q IL A V+ M TYLR++ L
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 528 FQPDNWRQFVAFVKKMNEGKD 548
Q N+ F FV KM+ +D
Sbjct: 426 LQKSNFNIFKKFVLKMHADQD 446
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 180/384 (46%), Gaps = 42/384 (10%)
Query: 122 VMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDL 181
VM PL + N + L+ LK+ GV + DVWWG VE ++W Y
Sbjct: 10 VMGPLAKI------NDWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTY 63
Query: 182 LEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYI 241
K GLK ++S H+CGGNVGD +IPLP W+ + D+ + + D+ G N E +
Sbjct: 64 ANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSADE-MQFKDESGYANSEAL 122
Query: 242 SLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQN 301
S P+ G + Y + +F + F I +I + GP+GELRYPSY
Sbjct: 123 S------PLWSGTG--KQYDELYASFAENFAGYK-SIIPKIYLSGGPSGELRYPSYYPAA 173
Query: 302 GTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYN--------NWPEDT 353
G W +PG G FQ Y + + K A +A ++GS +A N P D
Sbjct: 174 G-WSYPGRGKFQAYTE----TAKNAFRTAMNDKYGSLDKINAAWGTKLTSLSQINPPTDG 228
Query: 354 QFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDAT-GVKISVKVAGIHWHY 412
F NGG+ S YG+ FLSWY +L H I ++A FD+ GV+I K++G+HW
Sbjct: 229 DGFY-TNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQM 287
Query: 413 GSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPE 469
+ + H E GYY+ Y + Q FTC+EM D P +L P
Sbjct: 288 NNPAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSL--PS 339
Query: 470 KLVKQVASATQKAHVPLAGENALP 493
LV V+S V L GENALP
Sbjct: 340 TLVDTVSSIANAKGVRLNGENALP 363
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 196/413 (47%), Gaps = 40/413 (9%)
Query: 121 FVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSD 180
++M PL + V + + LR K G +M+D WWG +E++ +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAIMVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 181 LLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEY 240
+ K G+K+ ++S HQCGGNVGD ++P+P WV + D L + + G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKET 129
Query: 241 IS-LGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPE 299
++ L D I G + Y+ F A K +KD+ I +I++ GPAGELRYPSY
Sbjct: 130 LNPLASDVIRKEYG----ELYTAFAAAMK-PYKDV----IAKIELSGGPAGELRYPSYTT 180
Query: 300 QNGTWKFPGIGAFQCYDKYMLSSL------KAAAESAGKPEWGSTGPTDAGHYNNWPEDT 353
+GT +P G FQ Y ++ S K + + WG+ ++ P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 354 QFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDAT-GVKISVKVAGIHWHY 412
+ F G+ S YG+ +L WY +L +H + I A FD T V I K+AG+HW Y
Sbjct: 238 EQFLMN--GYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 413 GSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPE 469
+ + H E AGY + Y + NFTC+EM D P+ ++ P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVNFTCLEMTDKGSYPEYSM--PK 347
Query: 470 KLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLDVDKQMCAFTYLR 522
LV+ +A+ + + L GENAL +E E+ R A + + FT LR
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNE---EEYKRVAEMAFNYNFAGFTLLR 397
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 194/413 (46%), Gaps = 40/413 (9%)
Query: 121 FVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSD 180
++M PL + V + + LR K G + +D WWG +E++ +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 181 LLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEY 240
+ K G+K+ ++S HQCGGNVGD ++P+P WV + D L + + G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKET 129
Query: 241 IS-LGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPE 299
++ L D I G + Y+ F A K +KD+ I +I++ GPAGELRYPSY
Sbjct: 130 LNPLASDVIRKEYG----ELYTAFAAAMK-PYKDV----IAKIELSGGPAGELRYPSYTT 180
Query: 300 QNGTWKFPGIGAFQCYDKYMLSSL------KAAAESAGKPEWGSTGPTDAGHYNNWPEDT 353
+GT +P G FQ Y ++ S K + + WG+ ++ P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 354 QFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDAT-GVKISVKVAGIHWHY 412
+ F G+ S YG+ +L WY +L +H + I A FD T V I K+AG+HW Y
Sbjct: 238 EQFLMN--GYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 413 GSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPE 469
+ + H E AGY + Y + FTC+EM D P+ ++ P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM--PK 347
Query: 470 KLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLDVDKQMCAFTYLR 522
LV+ +A+ + + L GENAL +E E+ R A + + FT LR
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNE---EEYKRVAEMAFNYNFAGFTLLR 397
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 193/413 (46%), Gaps = 40/413 (9%)
Query: 121 FVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSD 180
++M PL + V + + LR K G + +D WWG +E++ +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 181 LLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEY 240
+ K G+K+ ++S HQCGGNVGD ++P+P WV + D L + + G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKET 129
Query: 241 IS-LGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPE 299
++ L D I G + Y+ F A K +KD+ I +I + GPAGELRYPSY
Sbjct: 130 LNPLASDVIRKEYG----ELYTAFAAAMK-PYKDV----IAKIYLSGGPAGELRYPSYTT 180
Query: 300 QNGTWKFPGIGAFQCYDKYMLSSL------KAAAESAGKPEWGSTGPTDAGHYNNWPEDT 353
+GT +P G FQ Y ++ S K + + WG+ ++ P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 354 QFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDAT-GVKISVKVAGIHWHY 412
+ F G+ S YG+ +L WY +L +H + I A FD T V I K+AG+HW Y
Sbjct: 238 EQFLMN--GYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 413 GSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPE 469
+ + H E AGY + Y + FTC+EM D P+ ++ P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM--PK 347
Query: 470 KLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLDVDKQMCAFTYLR 522
LV+ +A+ + + L GENAL +E E+ R A + + FT LR
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNE---EEYKRVAEMAFNYNFAGFTLLR 397
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 193/413 (46%), Gaps = 40/413 (9%)
Query: 121 FVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSD 180
++M PL + V + + LR K G + +D WWG +E++ +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 181 LLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEY 240
+ K G+K+ ++S HQCGGNVGD ++P+P WV + D L + + G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKET 129
Query: 241 IS-LGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPE 299
++ L D I G + Y+ F A K +KD+ I +I + GPAGELRYPSY
Sbjct: 130 LNPLASDVIRKEYG----ELYTAFAAAMK-PYKDV----IAKIFLSGGPAGELRYPSYTT 180
Query: 300 QNGTWKFPGIGAFQCYDKYMLSSL------KAAAESAGKPEWGSTGPTDAGHYNNWPEDT 353
+GT +P G FQ Y ++ S K + + WG+ ++ P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 354 QFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDAT-GVKISVKVAGIHWHY 412
+ F G+ S YG+ +L WY +L +H + I A FD T V I K+AG+HW Y
Sbjct: 238 EQFLMN--GYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 413 GSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPE 469
+ + H E AGY + Y + FTC+EM D P+ ++ P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM--PK 347
Query: 470 KLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLDVDKQMCAFTYLR 522
LV+ +A+ + + L GENAL +E E+ R A + + FT LR
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNE---EEYKRVAEMAFNYNFAGFTLLR 397
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 192/413 (46%), Gaps = 40/413 (9%)
Query: 121 FVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSD 180
++M PL + V + + LR K G + +D WWG +E++ +++
Sbjct: 14 YLMAPLKKIP---EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQR 70
Query: 181 LLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEY 240
+ K G+K+ ++S HQCGGNVGD ++P+P WV + D L + + G N E
Sbjct: 71 FAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKET 129
Query: 241 IS-LGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPE 299
++ L D I G + Y+ F A K +KD+ I +I + GPAG LRYPSY
Sbjct: 130 LNPLASDVIRKEYG----ELYTAFAAAMK-PYKDV----IAKIYLSGGPAGALRYPSYTT 180
Query: 300 QNGTWKFPGIGAFQCYDKYMLSSL------KAAAESAGKPEWGSTGPTDAGHYNNWPEDT 353
+GT +P G FQ Y ++ S K + + WG+ ++ P D
Sbjct: 181 SDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDG 237
Query: 354 QFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDAT-GVKISVKVAGIHWHY 412
+ F G+ S YG+ +L WY +L +H + I A FD T V I K+AG+HW Y
Sbjct: 238 EQFLMN--GYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 413 GSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPE 469
+ + H E AGY + Y + FTC+EM D P+ ++ P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM--PK 347
Query: 470 KLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLDVDKQMCAFTYLR 522
LV+ +A+ + + L GENAL +E E+ R A + + FT LR
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNE---EEYKRVAEMAFNYNFAGFTLLR 397
>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
Linguale
Length = 250
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 17 IQMDTGVVSGDSTGTVNASAVWKPVSTDLRCAIQKPDLKDTMSPPVSPCRSPVLSSMRAD 76
I D V++ D T +A + W S + R + PD +SPP + P L ++ D
Sbjct: 92 IHRDFRVLATDGTLLADARSTWLVFSXEKRSXVPLPDFIRQLSPPANVDPLPAL-PLKPD 150
Query: 77 LSVACRAFATESPTAAAV 94
A +FAT + + V
Sbjct: 151 FQTA--SFATAASKSVQV 166
>pdb|1VLG|A Chain A, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|B Chain B, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|C Chain C, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|D Chain D, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|E Chain E, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|F Chain F, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|G Chain G, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|H Chain H, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
Length = 176
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 174 NWGGYSDLLEMAKRHG-LKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLV 228
NW G D E A +H Q++ + + D ++ KW V+E +++D V
Sbjct: 93 NWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQV 148
>pdb|1Z4A|A Chain A, Ferritin From T. Maritima
pdb|1Z4A|B Chain B, Ferritin From T. Maritima
pdb|1Z4A|C Chain C, Ferritin From T. Maritima
pdb|1Z4A|D Chain D, Ferritin From T. Maritima
pdb|1Z4A|E Chain E, Ferritin From T. Maritima
pdb|1Z4A|F Chain F, Ferritin From T. Maritima
pdb|1Z4A|G Chain G, Ferritin From T. Maritima
pdb|1Z4A|H Chain H, Ferritin From T. Maritima
Length = 164
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 174 NWGGYSDLLEMAKRHG-LKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLV 228
NW G D E A +H Q++ + + D ++ KW V+E +++D V
Sbjct: 81 NWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLKWFVDEQVEEEDQV 136
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 329 SAGKPEWGSTGPTDAGHYNNWPEDTQ-------FFRKENGGWCSP 366
+ G PEWG P WP + FRKE G W +P
Sbjct: 263 APGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKEGGAWSTP 307
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 329 SAGKPEWGSTGPTDAGHYNNWPEDTQ-------FFRKENGGWCSP 366
+ G PEWG P WP + FRKE G W +P
Sbjct: 263 APGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKEGGAWSTP 307
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 329 SAGKPEWGSTGPTDAGHYNNWPEDTQ-------FFRKENGGWCSP 366
+ G PEWG P WP + FRKE G W +P
Sbjct: 263 APGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKEGGAWSTP 307
>pdb|1F2H|A Chain A, Solution Structure Of The N-Terminal Domain Of The Tnfr1
Associated Protein, Tradd
Length = 169
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 20/95 (21%)
Query: 108 QGGLQEKGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVER 167
Q G +E +FV LD V +S+ + A RAL++A E
Sbjct: 5 QNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAES------------ 52
Query: 168 DQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCG 202
GG D+L+M K H Q ++ CG
Sbjct: 53 --------GGSPDVLQMLKIHRSDPQLIVQLRFCG 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,399,112
Number of Sequences: 62578
Number of extensions: 808286
Number of successful extensions: 1982
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1845
Number of HSP's gapped (non-prelim): 37
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)