Query 008030
Match_columns 580
No_of_seqs 138 out of 197
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 18:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00197 beta-amylase; Provisi 100.0 4E-219 8E-224 1727.3 50.5 566 1-580 1-573 (573)
2 PLN02803 beta-amylase 100.0 1E-208 2E-213 1643.3 48.8 542 1-576 1-547 (548)
3 PLN02801 beta-amylase 100.0 1E-197 3E-202 1552.3 43.8 458 111-579 9-474 (517)
4 PLN02161 beta-amylase 100.0 6E-197 1E-201 1547.3 47.2 438 109-546 83-530 (531)
5 PLN02905 beta-amylase 100.0 5E-194 1E-198 1547.0 47.4 431 113-548 260-697 (702)
6 PLN02705 beta-amylase 100.0 4E-192 9E-197 1528.7 44.3 431 113-548 242-677 (681)
7 PF01373 Glyco_hydro_14: Glyco 100.0 5E-173 1E-177 1342.5 28.1 392 121-539 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.2 5.9E-10 1.3E-14 115.7 15.0 218 138-408 9-238 (374)
9 PF01301 Glyco_hydro_35: Glyco 98.2 3.5E-06 7.5E-11 87.4 8.7 116 138-284 23-146 (319)
10 COG1874 LacA Beta-galactosidas 97.7 0.00051 1.1E-08 78.3 13.9 149 138-337 29-195 (673)
11 PLN03059 beta-galactosidase; P 97.3 0.0026 5.6E-08 74.2 13.9 154 137-340 57-224 (840)
12 TIGR03356 BGL beta-galactosida 97.2 0.0011 2.3E-08 71.7 8.8 111 134-284 49-164 (427)
13 smart00633 Glyco_10 Glycosyl h 97.2 0.014 3.1E-07 58.3 15.4 191 162-458 3-195 (254)
14 PF00150 Cellulase: Cellulase 96.9 0.0032 7E-08 61.0 8.2 102 140-284 22-127 (281)
15 PRK09852 cryptic 6-phospho-bet 96.1 0.024 5.1E-07 62.5 9.2 112 134-284 66-183 (474)
16 PF00232 Glyco_hydro_1: Glycos 95.9 0.03 6.6E-07 60.8 8.7 111 134-284 53-169 (455)
17 TIGR01233 lacG 6-phospho-beta- 95.4 0.098 2.1E-06 57.5 10.6 112 132-284 46-162 (467)
18 PRK15014 6-phospho-beta-glucos 95.4 0.065 1.4E-06 59.2 9.0 113 134-285 64-182 (477)
19 KOG0496 Beta-galactosidase [Ca 95.2 0.038 8.2E-07 63.0 6.8 140 138-287 48-203 (649)
20 COG3693 XynA Beta-1,4-xylanase 95.2 0.17 3.6E-06 54.1 11.1 192 162-459 69-264 (345)
21 PRK09589 celA 6-phospho-beta-g 94.7 0.14 3E-06 56.6 9.2 112 134-284 62-179 (476)
22 PRK13511 6-phospho-beta-galact 94.5 0.11 2.3E-06 57.2 7.8 113 132-285 47-164 (469)
23 PLN02998 beta-glucosidase 94.1 0.22 4.8E-06 55.4 9.1 112 134-284 77-193 (497)
24 PLN02814 beta-glucosidase 94.0 0.23 5E-06 55.4 9.2 112 134-284 72-188 (504)
25 PF14871 GHL6: Hypothetical gl 93.5 1.7 3.6E-05 40.6 12.5 108 143-273 4-121 (132)
26 PLN02849 beta-glucosidase 93.4 0.33 7.2E-06 54.1 9.0 112 134-284 74-190 (503)
27 PRK09593 arb 6-phospho-beta-gl 93.2 0.86 1.9E-05 50.5 11.7 113 134-285 68-186 (478)
28 PF00331 Glyco_hydro_10: Glyco 93.0 0.36 7.7E-06 50.4 8.1 216 144-461 26-249 (320)
29 COG2723 BglB Beta-glucosidase/ 89.7 6.4 0.00014 44.1 13.8 157 124-329 41-206 (460)
30 cd03465 URO-D_like The URO-D _ 89.1 0.63 1.4E-05 47.4 5.3 79 141-232 170-251 (330)
31 PRK01060 endonuclease IV; Prov 88.0 1.3 2.8E-05 44.2 6.5 59 123-193 1-64 (281)
32 PF02638 DUF187: Glycosyl hydr 83.8 21 0.00046 37.5 13.2 229 135-451 15-258 (311)
33 TIGR01463 mtaA_cmuA methyltran 83.0 1.9 4E-05 44.8 5.0 59 141-203 182-243 (340)
34 cd00465 URO-D_CIMS_like The UR 82.9 2 4.4E-05 43.3 5.1 62 139-204 144-210 (306)
35 PF01229 Glyco_hydro_39: Glyco 82.2 4.1 8.9E-05 45.0 7.6 101 139-275 39-149 (486)
36 PRK02412 aroD 3-dehydroquinate 81.6 14 0.0003 37.6 10.6 110 144-292 100-211 (253)
37 PF07745 Glyco_hydro_53: Glyco 81.1 3 6.5E-05 44.7 5.8 53 143-200 28-80 (332)
38 PF00128 Alpha-amylase: Alpha 80.9 2.8 6.1E-05 40.7 5.1 65 137-204 2-81 (316)
39 PRK13209 L-xylulose 5-phosphat 80.0 3.6 7.8E-05 41.1 5.7 67 124-195 8-76 (283)
40 PF10566 Glyco_hydro_97: Glyco 78.9 2.9 6.3E-05 43.7 4.8 103 114-244 83-186 (273)
41 cd03308 CmuA_CmuC_like CmuA_Cm 77.5 3.6 7.9E-05 44.0 5.2 82 117-202 172-277 (378)
42 TIGR01093 aroD 3-dehydroquinat 77.3 17 0.00037 36.2 9.5 108 145-292 84-193 (228)
43 cd03307 Mta_CmuA_like MtaA_Cmu 76.6 2.6 5.7E-05 43.6 3.7 56 142-203 174-232 (326)
44 cd03311 CIMS_C_terminal_like C 75.9 12 0.00027 38.7 8.4 96 138-235 154-252 (332)
45 PLN02361 alpha-amylase 75.0 10 0.00022 41.6 7.8 67 137-206 27-107 (401)
46 KOG0626 Beta-glucosidase, lact 74.9 15 0.00032 41.9 9.2 75 134-220 86-165 (524)
47 cd00502 DHQase_I Type I 3-dehy 74.6 51 0.0011 32.6 11.9 139 144-325 81-221 (225)
48 PF01261 AP_endonuc_2: Xylose 73.6 3 6.6E-05 38.4 2.9 47 145-196 1-47 (213)
49 PRK11572 copper homeostasis pr 72.6 12 0.00025 39.0 7.1 74 117-201 51-127 (248)
50 PHA00442 host recBCD nuclease 72.1 3.4 7.4E-05 34.2 2.5 28 142-188 29-56 (59)
51 TIGR00542 hxl6Piso_put hexulos 72.0 6.5 0.00014 39.4 5.1 55 138-195 15-71 (279)
52 PF01487 DHquinase_I: Type I 3 71.9 28 0.00062 34.2 9.4 131 117-292 54-188 (224)
53 PRK13111 trpA tryptophan synth 71.6 10 0.00022 39.1 6.5 91 114-235 86-177 (258)
54 PRK06252 methylcobalamin:coenz 71.1 4.2 9.1E-05 42.1 3.6 56 142-203 183-241 (339)
55 smart00642 Aamy Alpha-amylase 69.3 23 0.00049 34.0 7.9 70 134-203 14-97 (166)
56 PF13653 GDPD_2: Glycerophosph 68.4 4.7 0.0001 29.3 2.3 18 142-159 10-27 (30)
57 PRK09856 fructoselysine 3-epim 66.2 14 0.00031 36.6 6.1 53 140-199 14-70 (275)
58 PLN02229 alpha-galactosidase 65.1 13 0.00028 41.3 6.1 70 137-207 78-161 (427)
59 TIGR03234 OH-pyruv-isom hydrox 64.7 15 0.00032 36.2 5.9 44 139-194 14-57 (254)
60 TIGR00433 bioB biotin syntheta 64.1 15 0.00032 37.2 5.8 55 142-198 123-180 (296)
61 PLN02591 tryptophan synthase 64.0 20 0.00044 36.9 6.8 88 116-234 77-165 (250)
62 PRK10658 putative alpha-glucos 63.4 2.4E+02 0.0051 33.3 15.9 85 138-236 282-373 (665)
63 PF05706 CDKN3: Cyclin-depende 63.3 5.2 0.00011 39.4 2.3 67 119-193 26-104 (168)
64 PRK08508 biotin synthase; Prov 62.7 49 0.0011 34.1 9.3 54 137-196 41-95 (279)
65 PRK13210 putative L-xylulose 5 62.6 18 0.00039 35.9 6.0 52 140-195 17-71 (284)
66 cd04724 Tryptophan_synthase_al 62.4 21 0.00045 36.1 6.5 64 117-199 76-139 (242)
67 TIGR01515 branching_enzym alph 61.7 19 0.0004 41.3 6.7 56 137-198 154-228 (613)
68 PF00290 Trp_syntA: Tryptophan 60.8 20 0.00042 37.3 6.1 91 114-235 84-175 (259)
69 PLN02389 biotin synthase 60.7 16 0.00034 39.7 5.6 51 142-193 178-230 (379)
70 PF01208 URO-D: Uroporphyrinog 60.7 5.7 0.00012 40.9 2.2 55 143-202 186-243 (343)
71 cd06592 GH31_glucosidase_KIAA1 59.4 1.4E+02 0.003 31.1 12.0 83 136-234 27-116 (303)
72 PRK09989 hypothetical protein; 59.1 24 0.00051 35.1 6.2 43 140-194 16-58 (258)
73 cd06593 GH31_xylosidase_YicI Y 57.4 30 0.00065 35.7 6.7 87 135-236 20-114 (308)
74 PF03659 Glyco_hydro_71: Glyco 56.6 32 0.00068 37.6 7.0 56 137-199 15-70 (386)
75 TIGR02402 trehalose_TreZ malto 56.2 30 0.00064 39.2 7.0 61 137-202 109-186 (542)
76 COG0646 MetH Methionine syntha 55.8 1.1E+02 0.0023 33.2 10.5 91 138-288 142-232 (311)
77 PLN02808 alpha-galactosidase 54.7 23 0.0005 38.9 5.7 61 137-197 47-118 (386)
78 TIGR02104 pulA_typeI pullulana 54.1 34 0.00074 39.1 7.1 64 139-202 164-256 (605)
79 PRK09997 hydroxypyruvate isome 53.1 27 0.00059 34.7 5.5 41 140-192 16-56 (258)
80 cd08627 PI-PLCc_gamma1 Catalyt 52.8 35 0.00077 35.2 6.3 66 132-200 23-99 (229)
81 cd00717 URO-D Uroporphyrinogen 52.6 15 0.00032 38.3 3.6 78 142-233 180-260 (335)
82 CHL00200 trpA tryptophan synth 50.1 45 0.00098 34.6 6.7 92 115-237 89-181 (263)
83 PRK09441 cytoplasmic alpha-amy 50.1 42 0.00092 37.0 6.9 67 137-203 20-108 (479)
84 PF14488 DUF4434: Domain of un 48.3 72 0.0016 30.9 7.3 60 137-198 18-87 (166)
85 PRK10785 maltodextrin glucosid 48.0 52 0.0011 37.7 7.3 63 137-202 177-252 (598)
86 TIGR02631 xylA_Arthro xylose i 47.8 21 0.00046 38.7 4.1 54 139-197 32-89 (382)
87 PLN02433 uroporphyrinogen deca 47.6 28 0.00061 36.7 4.8 57 142-202 182-241 (345)
88 TIGR02456 treS_nterm trehalose 47.1 62 0.0013 36.4 7.7 66 135-203 24-103 (539)
89 TIGR00695 uxuA mannonate dehyd 47.1 31 0.00068 38.1 5.2 51 144-198 15-65 (394)
90 PRK12313 glycogen branching en 46.8 54 0.0012 37.7 7.3 79 118-202 148-246 (633)
91 TIGR00262 trpA tryptophan synt 46.8 65 0.0014 33.1 7.1 65 116-199 86-150 (256)
92 TIGR01464 hemE uroporphyrinoge 46.4 21 0.00045 37.2 3.6 74 143-232 184-262 (338)
93 PF02065 Melibiase: Melibiase; 45.7 57 0.0012 35.9 6.9 80 137-220 56-146 (394)
94 PRK13125 trpA tryptophan synth 45.5 73 0.0016 32.1 7.2 67 116-199 73-139 (244)
95 PRK03906 mannonate dehydratase 44.9 32 0.00068 37.8 4.8 51 144-198 15-65 (385)
96 cd01299 Met_dep_hydrolase_A Me 44.8 62 0.0013 33.1 6.7 65 134-202 115-182 (342)
97 cd06604 GH31_glucosidase_II_Ma 44.7 2.2E+02 0.0048 30.0 10.9 87 135-235 20-113 (339)
98 PRK13398 3-deoxy-7-phosphohept 44.6 69 0.0015 33.4 7.0 59 133-194 35-96 (266)
99 PRK10933 trehalose-6-phosphate 44.4 60 0.0013 36.9 7.1 66 134-202 28-107 (551)
100 smart00518 AP2Ec AP endonuclea 44.2 1E+02 0.0022 30.6 8.0 114 139-275 10-128 (273)
101 TIGR03699 mena_SCO4550 menaqui 43.9 20 0.00044 37.4 3.1 52 142-198 143-203 (340)
102 cd06589 GH31 The enzymes of gl 43.9 3.7E+02 0.0079 27.4 13.8 177 135-348 20-219 (265)
103 cd03309 CmuC_like CmuC_like. P 43.8 20 0.00044 38.0 3.1 56 144-202 160-221 (321)
104 PRK00115 hemE uroporphyrinogen 43.1 26 0.00056 36.9 3.8 58 141-204 188-249 (346)
105 PLN02692 alpha-galactosidase 42.7 45 0.00097 37.1 5.6 59 137-196 71-141 (412)
106 PLN00196 alpha-amylase; Provis 42.7 79 0.0017 35.0 7.5 64 137-203 42-119 (428)
107 PF03932 CutC: CutC family; I 42.4 34 0.00073 34.5 4.2 73 115-198 48-123 (201)
108 PF01055 Glyco_hydro_31: Glyco 42.2 99 0.0022 33.3 8.0 86 135-236 39-134 (441)
109 cd00598 GH18_chitinase-like Th 42.1 87 0.0019 29.6 6.8 69 116-188 63-136 (210)
110 cd06591 GH31_xylosidase_XylS X 41.6 3.4E+02 0.0074 28.5 11.7 87 136-237 21-115 (319)
111 PF04187 DUF399: Protein of un 41.4 20 0.00043 35.8 2.5 23 173-195 86-108 (213)
112 TIGR03551 F420_cofH 7,8-dideme 40.1 23 0.0005 37.3 2.9 57 142-198 141-201 (343)
113 TIGR02403 trehalose_treC alpha 40.0 88 0.0019 35.4 7.5 66 134-202 22-101 (543)
114 PRK07094 biotin synthase; Prov 39.2 55 0.0012 33.8 5.4 52 142-198 129-187 (323)
115 PRK08508 biotin synthase; Prov 39.0 35 0.00076 35.1 3.9 51 142-198 102-159 (279)
116 PRK05222 5-methyltetrahydropte 38.9 69 0.0015 38.0 6.7 82 139-231 581-667 (758)
117 PF01791 DeoC: DeoC/LacD famil 38.7 20 0.00043 35.6 2.0 53 142-195 79-131 (236)
118 TIGR00423 radical SAM domain p 37.4 35 0.00076 35.4 3.6 54 141-198 106-167 (309)
119 PLN02475 5-methyltetrahydropte 37.2 91 0.002 37.3 7.3 84 139-233 586-674 (766)
120 PRK00957 methionine synthase; 36.7 1.3E+02 0.0028 31.1 7.6 79 139-235 144-223 (305)
121 cd08597 PI-PLCc_PRIP_metazoa C 36.7 75 0.0016 33.4 5.8 65 132-199 23-98 (260)
122 PRK07360 FO synthase subunit 2 36.5 49 0.0011 35.5 4.6 53 141-198 162-223 (371)
123 TIGR03849 arch_ComA phosphosul 36.3 73 0.0016 33.1 5.6 69 115-196 52-120 (237)
124 cd00958 DhnA Class I fructose- 35.2 51 0.0011 32.4 4.2 54 137-194 74-127 (235)
125 PF01717 Meth_synt_2: Cobalami 35.1 89 0.0019 32.5 6.1 87 138-236 153-245 (324)
126 PRK15108 biotin synthase; Prov 34.8 54 0.0012 35.0 4.6 45 142-192 136-187 (345)
127 PF01630 Glyco_hydro_56: Hyalu 34.7 38 0.00083 36.7 3.5 58 107-167 250-307 (337)
128 PRK12595 bifunctional 3-deoxy- 34.5 1.2E+02 0.0026 33.0 7.1 71 117-194 117-187 (360)
129 cd08592 PI-PLCc_gamma Catalyti 33.7 36 0.00078 35.1 2.9 31 132-163 23-53 (229)
130 PF01902 ATP_bind_4: ATP-bindi 33.5 70 0.0015 32.4 4.9 60 434-493 123-182 (218)
131 PRK04326 methionine synthase; 33.5 71 0.0015 33.2 5.1 78 139-233 161-239 (330)
132 COG2352 Ppc Phosphoenolpyruvat 33.4 34 0.00075 41.2 3.1 72 127-208 527-612 (910)
133 PF01183 Glyco_hydro_25: Glyco 33.3 74 0.0016 30.1 4.8 107 145-274 12-118 (181)
134 cd06602 GH31_MGAM_SI_GAA This 33.3 4.3E+02 0.0092 28.2 10.9 92 134-236 19-119 (339)
135 TIGR02102 pullulan_Gpos pullul 33.2 88 0.0019 39.0 6.5 65 137-201 478-580 (1111)
136 PRK09875 putative hydrolase; P 33.1 1.5E+02 0.0033 31.2 7.5 68 132-218 27-94 (292)
137 TIGR03700 mena_SCO4494 putativ 33.0 57 0.0012 34.6 4.4 53 141-198 149-210 (351)
138 COG1082 IolE Sugar phosphate i 32.4 86 0.0019 30.7 5.3 54 138-198 14-67 (274)
139 PRK09505 malS alpha-amylase; R 32.3 94 0.002 36.7 6.3 66 137-202 228-318 (683)
140 cd00019 AP2Ec AP endonuclease 32.1 1.2E+02 0.0026 30.4 6.4 53 139-193 10-63 (279)
141 PRK15452 putative protease; Pr 31.9 45 0.00098 37.1 3.6 42 114-160 56-97 (443)
142 COG2342 Predicted extracellula 31.7 78 0.0017 34.0 5.1 64 139-205 126-197 (300)
143 TIGR02884 spore_pdaA delta-lac 31.7 92 0.002 31.0 5.4 82 435-526 142-223 (224)
144 PTZ00445 p36-lilke protein; Pr 31.6 1.2E+02 0.0025 31.4 6.1 62 134-195 24-97 (219)
145 PF04854 DUF624: Protein of un 31.6 39 0.00084 28.0 2.3 23 252-274 37-59 (77)
146 PLN02417 dihydrodipicolinate s 31.4 2.3E+02 0.005 29.2 8.3 93 116-235 69-164 (280)
147 PRK12677 xylose isomerase; Pro 31.0 1.1E+02 0.0023 33.5 6.1 52 140-196 32-87 (384)
148 PF02679 ComA: (2R)-phospho-3- 30.8 59 0.0013 33.8 4.0 89 114-219 64-152 (244)
149 PF10255 Paf67: RNA polymerase 30.6 37 0.00081 37.6 2.6 33 174-223 6-39 (404)
150 PRK14511 maltooligosyl trehalo 30.5 1.8E+02 0.004 35.5 8.4 66 137-203 18-96 (879)
151 TIGR03679 arCOG00187 arCOG0018 30.5 1E+02 0.0022 30.8 5.5 60 434-493 124-183 (218)
152 cd06598 GH31_transferase_CtsZ 30.3 1.4E+02 0.003 31.4 6.6 66 135-200 20-94 (317)
153 PF01136 Peptidase_U32: Peptid 30.0 48 0.001 32.4 3.1 22 139-160 2-23 (233)
154 PRK06256 biotin synthase; Vali 29.8 58 0.0013 33.9 3.8 51 142-198 152-209 (336)
155 PF09184 PPP4R2: PPP4R2; Inte 29.7 11 0.00025 39.5 -1.4 31 516-546 96-127 (288)
156 PF04476 DUF556: Protein of un 29.7 70 0.0015 33.3 4.2 44 145-192 137-183 (235)
157 cd02876 GH18_SI-CLP Stabilin-1 29.6 90 0.0019 32.4 5.1 48 138-187 93-141 (318)
158 TIGR00674 dapA dihydrodipicoli 28.8 86 0.0019 32.1 4.8 95 116-235 66-163 (285)
159 PRK04302 triosephosphate isome 28.8 1.3E+02 0.0028 29.8 5.9 43 143-193 76-118 (223)
160 cd08560 GDPD_EcGlpQ_like_1 Gly 28.6 64 0.0014 34.9 4.0 49 143-195 249-297 (356)
161 COG2019 AdkA Archaeal adenylat 28.5 3.5E+02 0.0076 27.5 8.6 84 183-282 73-168 (189)
162 cd06565 GH20_GcnA-like Glycosy 28.0 4.9E+02 0.011 27.3 10.2 132 134-274 12-177 (301)
163 cd00950 DHDPS Dihydrodipicolin 27.4 1.3E+02 0.0028 30.7 5.7 102 136-253 79-185 (284)
164 PLN02746 hydroxymethylglutaryl 26.8 2.2E+02 0.0047 31.1 7.5 103 143-271 125-239 (347)
165 COG3142 CutC Uncharacterized p 26.8 1.5E+02 0.0032 31.1 5.9 76 116-202 50-128 (241)
166 COG2876 AroA 3-deoxy-D-arabino 26.7 1.2E+02 0.0026 32.5 5.3 59 132-190 222-282 (286)
167 TIGR01371 met_syn_B12ind 5-met 26.7 1.6E+02 0.0036 35.0 7.1 82 139-231 575-661 (750)
168 cd08593 PI-PLCc_delta Catalyti 26.5 1.3E+02 0.0029 31.6 5.6 57 132-191 23-85 (257)
169 cd08580 GDPD_Rv2277c_like Glyc 26.4 52 0.0011 33.9 2.7 22 135-160 238-259 (263)
170 PRK02227 hypothetical protein; 26.3 82 0.0018 32.8 4.0 46 143-192 135-183 (238)
171 smart00481 POLIIIAc DNA polyme 26.1 3E+02 0.0064 21.9 6.5 45 140-195 16-60 (67)
172 cd06600 GH31_MGAM-like This fa 26.1 6.2E+02 0.013 26.6 10.6 87 135-235 20-113 (317)
173 cd06595 GH31_xylosidase_XylS-l 25.9 2.1E+02 0.0046 29.6 7.0 60 137-196 23-94 (292)
174 cd08212 RuBisCO_large_I Ribulo 25.9 1.3E+02 0.0028 34.0 5.7 52 137-199 224-275 (450)
175 PRK14706 glycogen branching en 25.8 1.6E+02 0.0034 34.5 6.6 62 133-199 161-240 (639)
176 cd08625 PI-PLCc_beta3 Catalyti 25.7 1.5E+02 0.0032 31.2 5.8 68 132-200 23-101 (258)
177 PF03786 UxuA: D-mannonate deh 25.3 57 0.0012 35.7 2.9 51 144-198 16-67 (351)
178 TIGR02529 EutJ ethanolamine ut 25.1 1.9E+02 0.0041 29.1 6.4 63 123-197 25-96 (239)
179 PRK04175 rpl7ae 50S ribosomal 25.1 1.7E+02 0.0037 27.1 5.5 45 431-486 32-76 (122)
180 COG3867 Arabinogalactan endo-1 24.9 1.7E+02 0.0037 32.2 6.1 58 141-200 65-126 (403)
181 COG4130 Predicted sugar epimer 24.9 1.3E+02 0.0028 31.6 5.1 69 116-189 95-164 (272)
182 TIGR03056 bchO_mg_che_rel puta 24.6 2.8E+02 0.006 26.4 7.1 77 403-484 11-94 (278)
183 cd08629 PI-PLCc_delta1 Catalyt 24.4 1.8E+02 0.0038 30.8 6.1 65 132-199 23-98 (258)
184 cd08631 PI-PLCc_delta4 Catalyt 24.2 1.6E+02 0.0036 31.0 5.8 64 132-198 23-95 (258)
185 PRK08673 3-deoxy-7-phosphohept 24.2 1.6E+02 0.0034 32.0 5.9 58 132-194 100-162 (335)
186 TIGR02351 thiH thiazole biosyn 24.1 2.2E+02 0.0048 30.6 6.9 45 142-191 162-216 (366)
187 PRK09549 mtnW 2,3-diketo-5-met 23.9 2.1E+02 0.0045 31.9 6.8 48 139-199 214-263 (407)
188 PRK09121 5-methyltetrahydropte 23.9 1.2E+02 0.0026 32.4 4.9 124 139-275 156-299 (339)
189 PRK03170 dihydrodipicolinate s 23.5 1.6E+02 0.0034 30.3 5.5 102 136-253 80-186 (292)
190 PF03009 GDPD: Glycerophosphor 23.2 80 0.0017 30.0 3.1 20 144-163 15-34 (256)
191 PRK12858 tagatose 1,6-diphosph 23.1 1.4E+02 0.003 32.4 5.2 66 140-205 107-172 (340)
192 COG1312 UxuA D-mannonate dehyd 23.0 89 0.0019 34.4 3.7 64 144-216 15-78 (362)
193 PRK05402 glycogen branching en 22.9 2.1E+02 0.0045 33.7 7.0 65 133-202 259-341 (726)
194 cd06413 GH25_muramidase_1 Unch 22.8 2.5E+02 0.0054 27.1 6.4 51 144-201 16-66 (191)
195 PRK08445 hypothetical protein; 22.6 1.3E+02 0.0027 32.4 4.8 54 141-198 143-204 (348)
196 TIGR00010 hydrolase, TatD fami 22.5 2.1E+02 0.0046 27.6 5.9 46 141-199 17-62 (252)
197 PLN03231 putative alpha-galact 22.5 91 0.002 34.1 3.7 49 146-194 29-104 (357)
198 cd07947 DRE_TIM_Re_CS Clostrid 22.4 2.2E+02 0.0047 29.9 6.3 84 143-237 78-177 (279)
199 cd08594 PI-PLCc_eta Catalytic 22.2 2E+02 0.0044 29.8 5.9 67 132-201 23-100 (227)
200 PRK06233 hypothetical protein; 22.2 1.9E+02 0.0041 31.3 6.0 138 138-275 170-329 (372)
201 TIGR03677 rpl7ae 50S ribosomal 22.0 2.1E+02 0.0046 26.2 5.5 45 431-486 28-72 (117)
202 cd06545 GH18_3CO4_chitinase Th 22.0 1.2E+02 0.0027 30.3 4.3 41 140-188 86-127 (253)
203 cd08213 RuBisCO_large_III Ribu 22.0 1.6E+02 0.0034 32.9 5.4 52 138-199 210-261 (412)
204 PLN02784 alpha-amylase 22.0 2E+02 0.0042 35.3 6.5 63 138-203 520-596 (894)
205 PF00704 Glyco_hydro_18: Glyco 21.8 1.5E+02 0.0033 30.1 5.0 66 114-186 70-146 (343)
206 TIGR01415 trpB_rel pyridoxal-p 21.6 2.4E+02 0.0052 31.3 6.7 68 117-197 82-149 (419)
207 cd08595 PI-PLCc_zeta Catalytic 21.5 78 0.0017 33.3 2.9 31 132-163 23-53 (257)
208 PLN02960 alpha-amylase 21.5 3.2E+02 0.0069 33.6 8.1 64 134-202 411-492 (897)
209 PRK09240 thiH thiamine biosynt 21.4 2.6E+02 0.0057 30.2 6.9 61 142-222 163-236 (371)
210 CHL00200 trpA tryptophan synth 21.3 3.8E+02 0.0082 28.0 7.8 51 423-486 97-147 (263)
211 COG0159 TrpA Tryptophan syntha 21.2 2.7E+02 0.0058 29.6 6.7 64 115-197 92-155 (265)
212 PLN02564 6-phosphofructokinase 21.2 3.7E+02 0.008 30.8 8.2 94 140-282 164-258 (484)
213 TIGR00289 conserved hypothetic 21.1 1.8E+02 0.0039 29.7 5.3 66 436-502 125-193 (222)
214 PF05378 Hydant_A_N: Hydantoin 21.1 1.7E+02 0.0037 28.4 4.9 45 137-189 132-176 (176)
215 cd08562 GDPD_EcUgpQ_like Glyce 21.1 1.1E+02 0.0025 29.5 3.8 30 116-159 198-227 (229)
216 PTZ00286 6-phospho-1-fructokin 20.9 4.3E+02 0.0093 30.0 8.6 95 139-282 163-258 (459)
217 CHL00040 rbcL ribulose-1,5-bis 20.7 1.9E+02 0.004 33.0 5.7 53 137-199 246-298 (475)
218 cd08577 PI-PLCc_GDPD_SF_unchar 20.3 83 0.0018 31.9 2.7 44 145-189 15-68 (228)
No 1
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=3.9e-219 Score=1727.28 Aligned_cols=566 Identities=82% Similarity=1.362 Sum_probs=533.2
Q ss_pred CccccccccccccccccccCCcccccCCCCCCCCcceeccccccccccccCCCccccCCCCCCCCCCccccccccchHHH
Q 008030 1 MALNLTHQIGTLAGTPIQMDTGVVSGDSTGTVNASAVWKPVSTDLRCAIQKPDLKDTMSPPVSPCRSPVLSSMRADLSVA 80 (580)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (580)
|||||.||+||++++|+.++.... +...+ ++.+.++.|++.++...++..+..+.|+++|++|||+.|++++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (573)
T PLN00197 1 MAMNITHQIGALAGTPIKSGEITS--TSTLS------AKPPSPRMRCPKAMARNYEQKSQPTSPCMSPILGGMRADLSVA 72 (573)
T ss_pred CceeeccccchheecccCcccccc--ccccc------ccCCCCcccccccccchhhhhhcCCCcccCcccccccccchHH
Confidence 999999999999999999988332 22111 5567777777766677777777888899999999999999999
Q ss_pred hhhhhcc--CcccccccccccccccchhhccCccccCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEE
Q 008030 81 CRAFATE--SPTAAAVTEFSEEVGGEMYKQGGLQEKGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMM 158 (580)
Q Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmv 158 (580)
||+++.+ +-|.++.. ..+.+..+..+...++||||||||||+|+++|+|+|+++|+++|++||++|||||||
T Consensus 73 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmv 146 (573)
T PLN00197 73 CRAFATENDVVTIEEQR------EEREYRIGGTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMM 146 (573)
T ss_pred Hhhhhccccccccccch------hhhccccccccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999852 33444442 235567778888999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCccc
Q 008030 159 DVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNY 238 (580)
Q Consensus 159 DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~ 238 (580)
||||||||+++|++|||+||++||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+
T Consensus 147 DvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~ 226 (573)
T PLN00197 147 DVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNY 226 (573)
T ss_pred eeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcCceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHH
Q 008030 239 EYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKY 318 (580)
Q Consensus 239 EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDky 318 (580)
||||||||++|||+||||||||+|||+|||++|++||+++|+||+|||||||||||||||+++|+|+|||||||||||||
T Consensus 227 EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky 306 (573)
T PLN00197 227 EYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKY 306 (573)
T ss_pred ceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCccccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccCC
Q 008030 319 MLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATG 398 (580)
Q Consensus 319 mla~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~P~~t~FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~~ 398 (580)
|+++||++|+++|||+||++||||||+||++|++|+||++++|+|+|+||||||+|||++||+||||||++|+.+|++++
T Consensus 307 ml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~ 386 (573)
T PLN00197 307 MLSSLKAAAEAAGKPEWGSTGPTDAGHYNNWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTG 386 (573)
T ss_pred HHHHHHHHHHHhCCHhhcCCCCCCccccCCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999977789999999999999999999999999999999999999
Q ss_pred ceEEEEeceeeecCCCCCChhhhcccccCCCCCCChHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHH
Q 008030 399 VKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASA 478 (580)
Q Consensus 399 v~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~a 478 (580)
|+|++|||||||||+|+||||||||||||+++||||+||++|||||||+|+||||||+|.+||++++|+||+||+||+++
T Consensus 387 v~l~aKVaGIHWwY~t~SHAAELTAGyYNt~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~a 466 (573)
T PLN00197 387 VKISVKIAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALA 466 (573)
T ss_pred ceEEEEeccceeecCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccccccCcCCCcchHHHHHHHcccCc-----CCCccceeeecCCcCcCCCccHHHHHHHHHHhcCCCCcchhh
Q 008030 479 TQKAHVPLAGENALPRYDEYAHEQILRAASLDV-----DKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKDVHRCL 553 (580)
Q Consensus 479 A~~~GV~laGENAL~~~D~~ay~qI~~~~~~~~-----~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~c~ 553 (580)
||++||+|+|||||+|||.++|+||+++++... ..++++||||||++.||+++||++|++|||+||++...++||
T Consensus 467 A~~~Gv~vaGENAL~r~D~~~~~qI~~~~~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~ 546 (573)
T PLN00197 467 TREAEVPLAGENALPRYDDYAHEQILQASSLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDSHRCR 546 (573)
T ss_pred HHHcCCcEeeeccccccChhHHHHHHHhcccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCCCccc
Confidence 999999999999999999999999999975321 145999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccchhHHHHHhhcC
Q 008030 554 EQVEREAEHFVHVTQPLVQEAAVALMH 580 (580)
Q Consensus 554 e~~e~~~~~~~~~~~pl~~eaa~~~~~ 580 (580)
|+.++++++.+++|+||+||||++|+|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~e~a~~~~~ 573 (573)
T PLN00197 547 EQVEREAEHFVHVTRPLVQEAAVALMH 573 (573)
T ss_pred hhcchhcccceecchhhHHHHHHHhhC
Confidence 999999999999999999999999986
No 2
>PLN02803 beta-amylase
Probab=100.00 E-value=1.1e-208 Score=1643.26 Aligned_cols=542 Identities=55% Similarity=0.973 Sum_probs=504.5
Q ss_pred CccccccccccccccccccCCcccccCCCCCCCCcceeccccccc-cccccCCCccccCCCCCCCCCCccccccccchHH
Q 008030 1 MALNLTHQIGTLAGTPIQMDTGVVSGDSTGTVNASAVWKPVSTDL-RCAIQKPDLKDTMSPPVSPCRSPVLSSMRADLSV 79 (580)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (580)
||+|++|| +.+++|+.++.. ......++..+++++.++. |++ ........+.+++|+++|
T Consensus 1 m~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------- 61 (548)
T PLN02803 1 MALTLRSS--TSFISPKDTKSL----KTPDDFSGTICFAPIKPSCYRLQ--AKNSMQEAQLTHEEIFTP----------- 61 (548)
T ss_pred CcccccCc--cccCCCcccccc----cccccccccccccCCCCcccccc--cccccchhhcccCcccCc-----------
Confidence 99999999 778888888773 3344445556666666665 443 444455556777788876
Q ss_pred HhhhhhccCcccccccccccccccchhhccCccccCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEe
Q 008030 80 ACRAFATESPTAAAVTEFSEEVGGEMYKQGGLQEKGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMD 159 (580)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvD 159 (580)
.|++++. .+...|..+......++||||||||||+|+++|+|+++++|+++|++||++||||||||
T Consensus 62 ~~~~~~~--------------~~~~~~~~~~~~~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvD 127 (548)
T PLN02803 62 EGRKSEN--------------WEKLHALSGPHSKNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVD 127 (548)
T ss_pred ccccccc--------------ccccccccCcccccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2777764 11245566667788999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCcccc
Q 008030 160 VWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYE 239 (580)
Q Consensus 160 VWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~E 239 (580)
|||||||+++|++|||+||++||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+|
T Consensus 128 VWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~E 207 (548)
T PLN02803 128 AWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPE 207 (548)
T ss_pred eeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcCceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHH
Q 008030 240 YISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYM 319 (580)
Q Consensus 240 yLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkym 319 (580)
|||||||++|||+||||||||+|||+|||++|++||+++|+||+|||||||||||||||+++|+|+||||||||||||||
T Consensus 208 yLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~ 287 (548)
T PLN02803 208 YISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYM 287 (548)
T ss_pred eeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCccccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccCCc
Q 008030 320 LSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGV 399 (580)
Q Consensus 320 la~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~P~~t~FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~~v 399 (580)
+++||++|+++|||+||++||||||+||++|++|+||+++ |+|+|+||||||+|||++||+||||||++|+.+|++++|
T Consensus 288 l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~-G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v 366 (548)
T PLN02803 288 RASLEASAEAIGKKDWGRGGPHDAGEYKQFPEETGFFRRD-GTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGA 366 (548)
T ss_pred HHHHHHHHHHhCCHhhccCCCCCcCcCCCCCCCCCCCCCC-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999999999999976 899999999999999999999999999999999999999
Q ss_pred eEEEEeceeeecCCCCCChhhhcccccCCCCCCChHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHH
Q 008030 400 KISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASAT 479 (580)
Q Consensus 400 ~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA 479 (580)
+|++|||||||||+|+|||||||||||||++||||++|++|||||||+|+||||||+|++||++++|+||+||+||+++|
T Consensus 367 ~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa 446 (548)
T PLN02803 367 KLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHDGYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEGLVRQVKMAT 446 (548)
T ss_pred eEEEEeceeeeecCCCCchhhhccccccCCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccccccCcCCCcchHHHHHHHcccCcCCCccceeeecCCcCcCCCccHHHHHHHHHHhcCCCCcchhhHHHHHh
Q 008030 480 QKAHVPLAGENALPRYDEYAHEQILRAASLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKDVHRCLEQVERE 559 (580)
Q Consensus 480 ~~~GV~laGENAL~~~D~~ay~qI~~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~c~e~~e~~ 559 (580)
+++||+|+|||||+|||.++|+||+++++.+...+|++||||||+++||+++||++|++|||+||++.+.+.|++.++++
T Consensus 447 ~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~ 526 (548)
T PLN02803 447 RTAGTELAGENALERYDSAAFAQVVATSRSDSGNGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRNRRLPECDTEG 526 (548)
T ss_pred HHcCCceeeeccccccCHHHHHHHHHhhcccccCceeeeEEecCChHHcChhhHHHHHHHHHHhcCccccCccchhhccC
Confidence 99999999999999999999999999987543357999999999999999999999999999999999999999999998
Q ss_pred hcccc----ccccchhHHHHH
Q 008030 560 AEHFV----HVTQPLVQEAAV 576 (580)
Q Consensus 560 ~~~~~----~~~~pl~~eaa~ 576 (580)
.++.+ +.++|+++|||+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~a~ 547 (548)
T PLN02803 527 SDLYVGFIKDKDAEKTTEAAL 547 (548)
T ss_pred ccchhhhhcccchhhhhhhhc
Confidence 88887 899999999996
No 3
>PLN02801 beta-amylase
Probab=100.00 E-value=1.4e-197 Score=1552.31 Aligned_cols=458 Identities=50% Similarity=0.935 Sum_probs=437.6
Q ss_pred ccccCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCC
Q 008030 111 LQEKGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGL 190 (580)
Q Consensus 111 ~~~~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GL 190 (580)
.....++||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++||
T Consensus 9 ~~~~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GL 88 (517)
T PLN02801 9 EKMLANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGL 88 (517)
T ss_pred ccccCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCC
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHH
Q 008030 191 KVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDK 270 (580)
Q Consensus 191 KlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~ 270 (580)
|||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++
T Consensus 89 Klq~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~ 168 (517)
T PLN02801 89 KIQAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFREN 168 (517)
T ss_pred eEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcC-ceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCCC
Q 008030 271 FKDLLGD-TIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNW 349 (580)
Q Consensus 271 F~~~l~~-~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~ 349 (580)
|++||++ +|+||+|||||||||||||||+++ +|+||||||||||||||+++||++|+++|||+||+ |||||+||+.
T Consensus 169 F~~~l~~~~I~eI~VGlGP~GELRYPSYp~~~-gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~--P~dag~Yn~~ 245 (517)
T PLN02801 169 MADFLEAGVIIDIEVGLGPAGELRYPSYPETQ-GWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL--PDDAGEYNDT 245 (517)
T ss_pred HHHhccCCeeEEEEEcccccccccCCCCcCCC-CCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC--CCCCCcccCC
Confidence 9999974 999999999999999999999987 49999999999999999999999999999999995 9999999999
Q ss_pred CCCccccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccCCceEEEEeceeeecCCCCCChhhhcccccCCC
Q 008030 350 PEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTR 429 (580)
Q Consensus 350 P~~t~FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~~v~l~aKV~GIHWwY~t~SHaAELTAGyYNt~ 429 (580)
|++|+||+++ |+|+|+||||||+|||++||+||||||++|+++|++++|+|++|||||||||+|+||||||||||||++
T Consensus 246 P~~t~FF~~~-G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~ 324 (517)
T PLN02801 246 PEDTGFFKSN-GTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLK 324 (517)
T ss_pred CCCCCCCCCC-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCC
Confidence 9999999976 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcccccccCcCCCcchHHHHHHHccc
Q 008030 430 FRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASL 509 (580)
Q Consensus 430 ~rdGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~~~D~~ay~qI~~~~~~ 509 (580)
+||||.|||+|||||+|+|+||||||+|++||++++|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++.
T Consensus 325 ~rDGY~pIa~m~~rh~~~l~FTClEM~D~eq~~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~ 404 (517)
T PLN02801 325 GRDGYRPIARMLSRHYGILNFTCLEMRDTEQPAEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARP 404 (517)
T ss_pred CccchHHHHHHHHHcCCeEEEeecccccCCCCcccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CcC-------CCccceeeecCCcCcCCCccHHHHHHHHHHhcCCCCcchhhHHHHHhhccccccccchhHHHHHhhc
Q 008030 510 DVD-------KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKDVHRCLEQVEREAEHFVHVTQPLVQEAAVALM 579 (580)
Q Consensus 510 ~~~-------~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~c~e~~e~~~~~~~~~~~pl~~eaa~~~~ 579 (580)
+.. .+|++||||||++.||+++||++|++|||+||++++ .|++... ..|.+.||.++.+++++
T Consensus 405 ~~~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~--~~~~~~~-----~~~~~~p~~~~~~~~~~ 474 (517)
T PLN02801 405 NGVNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQD--YCPDPAK-----YGHEIVPLERSNPEISI 474 (517)
T ss_pred ccCCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccc--cCCChhh-----cCCCCCccccCCCcccH
Confidence 321 358999999999999999999999999999998754 5664443 34688888888776543
No 4
>PLN02161 beta-amylase
Probab=100.00 E-value=5.9e-197 Score=1547.27 Aligned_cols=438 Identities=42% Similarity=0.860 Sum_probs=425.7
Q ss_pred cCccccCCCccEEEeeecceecCC----CcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHH
Q 008030 109 GGLQEKGNGVPVFVMMPLDSVTMS----NTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 184 (580)
Q Consensus 109 ~~~~~~~~~vpvyVMlPLd~V~~~----~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~m 184 (580)
...+...++||||||||||+|+.+ ++|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|
T Consensus 83 ~~~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~m 162 (531)
T PLN02161 83 VLVSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRL 162 (531)
T ss_pred ccccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHH
Confidence 445568889999999999999965 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHH
Q 008030 185 AKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFM 264 (580)
Q Consensus 185 vr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM 264 (580)
||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||
T Consensus 163 vr~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 163 ISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred HHHcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHHhCCCCcCCCCCCCCC
Q 008030 265 RAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAG 344 (580)
Q Consensus 265 ~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~~G~~~WG~~GP~dAg 344 (580)
+|||++|++||+++|+||+|||||||||||||||+++|+|+||||||||||||||+++||++|+++|||+||++||||||
T Consensus 243 ~SFr~~F~~~~~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg 322 (531)
T PLN02161 243 LSFSTKFEPYIGNVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTG 322 (531)
T ss_pred HHHHHHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCc
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhcc------CCceEEEEeceeeecCCCCCCh
Q 008030 345 HYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDA------TGVKISVKVAGIHWHYGSRSHA 418 (580)
Q Consensus 345 ~Yn~~P~~t~FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~------~~v~l~aKV~GIHWwY~t~SHa 418 (580)
.||+.|++|+||++++|+|+|+||||||+|||++||+||||||++|+.+|++ ++|+|++|||||||||+|+|||
T Consensus 323 ~Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHa 402 (531)
T PLN02161 323 CYNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHP 402 (531)
T ss_pred ccCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCch
Confidence 9999999999999887899999999999999999999999999999999975 5899999999999999999999
Q ss_pred hhhcccccCCCCCCChHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcccccccCcCCCcc
Q 008030 419 PELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEY 498 (580)
Q Consensus 419 AELTAGyYNt~~rdGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~~~D~~ 498 (580)
|||||||||+++||||.|||+|||||+|+|+||||||+|+|||+++.|+||+||+||+++|+++||+|+|||||+|||..
T Consensus 403 AElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~ 482 (531)
T PLN02161 403 AELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEM 482 (531)
T ss_pred hhhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCccccCCHHHHHHHHHHHHHHcCCceeecccccccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcccCcCCCccceeeecCCcCcCCCccHHHHHHHHHHhcCC
Q 008030 499 AHEQILRAASLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEG 546 (580)
Q Consensus 499 ay~qI~~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~ 546 (580)
+|+||+++++..+..++++||||||+++||+++||++|++|||+||++
T Consensus 483 ~~~qi~~n~~~~~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~ 530 (531)
T PLN02161 483 GLRQIRENCVQPNGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSAD 530 (531)
T ss_pred HHHHHHHHhcCCCCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCC
Confidence 999999998643335699999999999999999999999999999986
No 5
>PLN02905 beta-amylase
Probab=100.00 E-value=4.6e-194 Score=1547.01 Aligned_cols=431 Identities=46% Similarity=0.867 Sum_probs=418.4
Q ss_pred ccCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcE
Q 008030 113 EKGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKV 192 (580)
Q Consensus 113 ~~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 192 (580)
....+||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++||||
T Consensus 260 ~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKl 339 (702)
T PLN02905 260 AGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKL 339 (702)
T ss_pred cCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHh
Q 008030 193 QAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFK 272 (580)
Q Consensus 193 qvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~ 272 (580)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|+
T Consensus 340 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~ 419 (702)
T PLN02905 340 QVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFD 419 (702)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-ceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCCCCC
Q 008030 273 DLLGD-TIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPE 351 (580)
Q Consensus 273 ~~l~~-~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~P~ 351 (580)
+||++ +|+||+|||||||||||||||++. +|+||||||||||||||+++||++|+++|||+||+ ||||||+||+.|+
T Consensus 420 ~fl~~g~I~eI~VGLGPaGELRYPSYp~s~-GW~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~-gP~dAG~YN~~P~ 497 (702)
T PLN02905 420 EFFEDGVISMVEVGLGPCGELRYPSCPVKH-GWRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWAR-GPDNTGSYNSQPH 497 (702)
T ss_pred HHhcCCceEEEEeccCCCccccCCCCcCcC-CCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCCCccCCCCC
Confidence 99976 999999999999999999999987 59999999999999999999999999999999997 9999999999999
Q ss_pred CccccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccCCceEEEEeceeeecCCCCCChhhhcccccCCCCC
Q 008030 352 DTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFR 431 (580)
Q Consensus 352 ~t~FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~~v~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~r 431 (580)
+|+||+++ |+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+||||||||||||+++|
T Consensus 498 ~TgFF~~~-Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g--~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~r 574 (702)
T PLN02905 498 ETGFFCDG-GDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIAAKLPGVHWWYKTASHAAELTAGFYNPCNR 574 (702)
T ss_pred CCCCCCCC-CcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchHhhccccccCCCc
Confidence 99999976 899999999999999999999999999999999975 799999999999999999999999999999999
Q ss_pred CChHHHHHHHHHcCCEEEEeeccccCCCCCC---CCCCChHHHHHHHHHHHHhcCCcccccccCcCCCcchHHHHHHHcc
Q 008030 432 DGYLPIAQMLARHGAIFNFTCIEMRDHEQPQ---DALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAAS 508 (580)
Q Consensus 432 dGY~~Ia~mfarh~~~l~FTClEM~D~eqp~---~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~~~D~~ay~qI~~~~~ 508 (580)
|||+||++|||||+|+|+||||||+|++||+ +++|+||+||+||+++||++||+|+|||||+|||..+|+||+++++
T Consensus 575 DGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na~ 654 (702)
T PLN02905 575 DGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENAK 654 (702)
T ss_pred ccHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhh
Confidence 9999999999999999999999999999986 8899999999999999999999999999999999999999999997
Q ss_pred cCcC---CCccceeeecCCcCcCCCccHHHHHHHHHHhcCCCC
Q 008030 509 LDVD---KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 548 (580)
Q Consensus 509 ~~~~---~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 548 (580)
.+++ .+|++||||||++.||+++||++|++|||+||++..
T Consensus 655 ~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~~~ 697 (702)
T PLN02905 655 PLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGEAV 697 (702)
T ss_pred cccCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhccccc
Confidence 6432 359999999999999999999999999999998743
No 6
>PLN02705 beta-amylase
Probab=100.00 E-value=3.9e-192 Score=1528.72 Aligned_cols=431 Identities=39% Similarity=0.743 Sum_probs=418.4
Q ss_pred ccCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcE
Q 008030 113 EKGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKV 192 (580)
Q Consensus 113 ~~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 192 (580)
...++||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++||||
T Consensus 242 ~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 321 (681)
T PLN02705 242 TETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKL 321 (681)
T ss_pred CCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHh
Q 008030 193 QAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFK 272 (580)
Q Consensus 193 qvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~ 272 (580)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|+
T Consensus 322 qvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~ 401 (681)
T PLN02705 322 QVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFD 401 (681)
T ss_pred EEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-ceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCCCCC
Q 008030 273 DLLGD-TIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPE 351 (580)
Q Consensus 273 ~~l~~-~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~P~ 351 (580)
+||++ +|+||+|||||||||||||||++. +|+||||||||||||||+++||++|+++|||+||+ ||||||+||+.|+
T Consensus 402 ~fl~~g~I~eI~VGLGP~GELRYPSYp~~~-gW~fPGiGEFQCYDkymla~Lk~aA~a~GhpeWG~-gP~dAg~YN~~P~ 479 (681)
T PLN02705 402 DLFVEGLITAVEIGLGASGELKYPSFPERM-GWIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFWAR-GPDNAGQYNSRPH 479 (681)
T ss_pred HhccCCceeEEEeccCCCccccCCCCcccC-CCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCccccCCCCC
Confidence 99976 999999999999999999999987 59999999999999999999999999999999997 8999999999999
Q ss_pred CccccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccCCceEEEEeceeeecCCCCCChhhhcccccCCCCC
Q 008030 352 DTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFR 431 (580)
Q Consensus 352 ~t~FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~~v~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~r 431 (580)
+|+||+++ |+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+||||||||||||+++|
T Consensus 480 ~tgFF~~~-G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~--~~LsaKVaGIHWWY~t~SHAAELTAGYYNt~~r 556 (681)
T PLN02705 480 ETGFFCER-GDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEE--TKIIVKIPAVYWWYKTASHAAELTAGYYNPTNQ 556 (681)
T ss_pred CCCCCCCC-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchhhhccccccCCCc
Confidence 99999987 789999999999999999999999999999999975 799999999999999999999999999999999
Q ss_pred CChHHHHHHHHHcCCEEEEeeccccCCCC-CCCCCCChHHHHHHHHHHHHhcCCcccccccCcCCCcchHHHHHHHcccC
Q 008030 432 DGYLPIAQMLARHGAIFNFTCIEMRDHEQ-PQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLD 510 (580)
Q Consensus 432 dGY~~Ia~mfarh~~~l~FTClEM~D~eq-p~~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~~~D~~ay~qI~~~~~~~ 510 (580)
|||++|++|||||+|+|+|||+||+|.++ |.+++|+||+||+||+++||++||+|+|||||+|||.++|+||+++++++
T Consensus 557 DGY~pIa~mfarh~~~l~FTC~eMe~~d~~~~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~na~~~ 636 (681)
T PLN02705 557 DGYSPVFETLKKHSVTVKFVCSGLQMSPNENDEALADPEGLSWQVLNSAWDRGLTVAGENAITCYDREGCMRLIEIAKPR 636 (681)
T ss_pred ccHHHHHHHHHHcCceEEEEeccccccCCCCCccCCCHHHHHHHHHHHHHHcCCceeecccccccCHHHHHHHHHHhccc
Confidence 99999999999999999999999999986 88999999999999999999999999999999999999999999999865
Q ss_pred cC---CCccceeeecCCcCcCCCccHHHHHHHHHHhcCCCC
Q 008030 511 VD---KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 548 (580)
Q Consensus 511 ~~---~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 548 (580)
++ .+|++||||||++.||+++||++|++|||+||++..
T Consensus 637 ~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~ 677 (681)
T PLN02705 637 NHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDIR 677 (681)
T ss_pred CCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhccccc
Confidence 32 359999999999999999999999999999998744
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=5.2e-173 Score=1342.51 Aligned_cols=392 Identities=66% Similarity=1.189 Sum_probs=336.3
Q ss_pred EEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeec
Q 008030 121 FVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQ 200 (580)
Q Consensus 121 yVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHq 200 (580)
|||||||+|++++.++ +|+++|++||++|||||||||||||||+++|+||||++|++||+|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcCcee
Q 008030 201 CGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIV 280 (580)
Q Consensus 201 CGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~ 280 (580)
|||||||+|+||||+||++++++| ||+||||+|+||+|||| ||++||| ||+|+|||+|||++|++|+ ++|+
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~-~~I~ 148 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL-STIT 148 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH-TGEE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH-hhhe
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 9999
Q ss_pred EEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHH------HhCCCCcCCCCCCCCCCCCCCCCCcc
Q 008030 281 EIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAE------SAGKPEWGSTGPTDAGHYNNWPEDTQ 354 (580)
Q Consensus 281 eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~------~~G~~~WG~~GP~dAg~Yn~~P~~t~ 354 (580)
||+|||||||||||||||+++| |+||||||||||||||+++||++|+ ..+||+||++||||+ ||+.|++|+
T Consensus 149 ~I~vglGP~GELRYPSy~~~~g-w~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 149 EIQVGLGPAGELRYPSYPESDG-WRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEE--SGGGBSS-S-S-GGGT-B-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred EEEeccCCcceeccCCCCCCCC-CcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 9999999999999999999996 9999999999999999999999999 456999999999999 999999999
Q ss_pred ccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccC-CceEEEEeceeeecCC--CCCChhhhcccccCCCCC
Q 008030 355 FFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDAT-GVKISVKVAGIHWHYG--SRSHAPELTAGYYNTRFR 431 (580)
Q Consensus 355 FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~-~v~l~aKV~GIHWwY~--t~SHaAELTAGyYNt~~r 431 (580)
||+++ |+|+|+||||||+|||++|++||||||++|+.+|+++ +|+|++|||||||||+ |+||||||||||||
T Consensus 226 fF~~~-G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN---- 300 (402)
T PF01373_consen 226 FFRDN-GSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN---- 300 (402)
T ss_dssp TTSTT-CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S-----
T ss_pred CcccC-CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC----
Confidence 99987 7999999999999999999999999999999999999 9999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHcCCEEEEeeccccCCC-CCCCCCCChHHHHHHHHHHHHhcCCcccccccCcCCCcchHHHHHHHcccC
Q 008030 432 DGYLPIAQMLARHGAIFNFTCIEMRDHE-QPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLD 510 (580)
Q Consensus 432 dGY~~Ia~mfarh~~~l~FTClEM~D~e-qp~~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~~~D~~ay~qI~~~~~~~ 510 (580)
|+||++|||||+|+|+||||||+|.+ +|. .|+||+||+||+++|+++||+|+|||||+|||+.+|+||+++++.
T Consensus 301 --Y~~Ia~mf~kh~~~l~fTClEM~d~~~~p~--~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~- 375 (402)
T PF01373_consen 301 --YSPIARMFKKHGVTLNFTCLEMRDSEEQPE--YSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKG- 375 (402)
T ss_dssp --SHHHHHHHHTTT-EEEES-TT--GGSGSCG--GG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTH-
T ss_pred --HHHHHHHHHHcCcEEEEEeccccCCCCCCC--CCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhc-
Confidence 99999999999999999999999994 444 579999999999999999999999999999999999999999864
Q ss_pred cCCCccceeeecCCcCcCCCccHHHHHHH
Q 008030 511 VDKQMCAFTYLRMNPHLFQPDNWRQFVAF 539 (580)
Q Consensus 511 ~~~~~~~FTyLRm~~~lf~~~n~~~F~~F 539 (580)
.++.+||||||++.||+++||.+|++|
T Consensus 376 --~~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 376 --YNYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp --TTTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred --cCCCCeEEEccChHhcCcccHHhccCC
Confidence 457789999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.15 E-value=5.9e-10 Score=115.74 Aligned_cols=218 Identities=18% Similarity=0.331 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHcCcceEEE-eeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChh
Q 008030 138 KKAIDASLRALKSAGVEGVMM-DVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKW 216 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~W 216 (580)
.+.++..|+.+|++|+.-|.+ .+-|..+|+ .+++|||+.++++++++++.||||...+.. -..|.|
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~------------~~~P~W 75 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKVILGTPT------------AAPPAW 75 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EEEEEECT------------TTS-HH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeEEEEecc------------cccccc
Confidence 468999999999999999996 899999998 599999999999999999999997544431 248999
Q ss_pred hHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEEccccCcccCC
Q 008030 217 VVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQVGMGPAGELRY 294 (580)
Q Consensus 217 V~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~VGlGP~GELRY 294 (580)
+.+ +.|++...|+.|.+.. .|.-...- .--..|+++++.|..++..-.++ .|..++|.=.|.+.
T Consensus 76 l~~---~~Pe~~~~~~~g~~~~----~g~~~~~~----~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~--- 141 (374)
T PF02449_consen 76 LYD---KYPEILPVDADGRRRG----FGSRQHYC----PNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH--- 141 (374)
T ss_dssp HHC---CSGCCC-B-TTTSBEE----CCCSTT-H----CCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT---
T ss_pred hhh---hcccccccCCCCCcCc----cCCccccc----hhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC---
Confidence 975 5799999999997632 11111110 11356888888888888765554 68888885333222
Q ss_pred CCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHH-hC-----CCCcCCCC-CCCCCCCCCC--CCCccccccCCCCccc
Q 008030 295 PSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAES-AG-----KPEWGSTG-PTDAGHYNNW--PEDTQFFRKENGGWCS 365 (580)
Q Consensus 295 PSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~-~G-----~~~WG~~G-P~dAg~Yn~~--P~~t~FF~~~~G~w~S 365 (580)
.||++.+++.|++..++ +| |..||+.- .+.-.++.+. |..+.... +.
T Consensus 142 ------------------~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~------~~ 197 (374)
T PF02449_consen 142 ------------------RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPE------NP 197 (374)
T ss_dssp ------------------S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---------H
T ss_pred ------------------cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCC------Ch
Confidence 69999999999999986 55 78888632 1111222221 33333111 11
Q ss_pred ccchhhHHHhhHHHHhHHHHHHHHHHhhhccCCceEEEEecee
Q 008030 366 PYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGI 408 (580)
Q Consensus 366 ~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~~v~l~aKV~GI 408 (580)
..-.+|...-+..+.+.-..+.+..+++- .+..|..+.-+.
T Consensus 198 ~~~~D~~rF~~~~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~ 238 (374)
T PF02449_consen 198 AQWLDWYRFQSDRVAEFFRWQADIIREYD--PDHPVTTNFMGS 238 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TT-EEE-EE-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCceEEeCcccc
Confidence 12335555667888888888888887775 356777777766
No 9
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.23 E-value=3.5e-06 Score=87.42 Aligned_cols=116 Identities=24% Similarity=0.458 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchH---HHHHHHHHHcCCcEEEEEee--eccCCCCCCccccc
Q 008030 138 KKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGY---SDLLEMAKRHGLKVQAVMSF--HQCGGNVGDSVSIP 212 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY---~~l~~mvr~~GLKlqvvmSF--HqCGGNVGD~~~IP 212 (580)
++..+..|+++|++|+..|.+-|-|...|. .+++|||++- ..++++|++.||+| |+.+ =.|+ ...+=-
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~a----E~~~gG 95 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICA----EWDNGG 95 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---T----TBGGGG
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceecc----cccchh
Confidence 677889999999999999999999999998 4999999985 48899999999995 5554 3343 122223
Q ss_pred CChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhc---CceeEEEE
Q 008030 213 LPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLG---DTIVEIQV 284 (580)
Q Consensus 213 LP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~---~~I~eI~V 284 (580)
||.|+.+. +++.+... +.+| ++.-+.|++.+....++++- ..|.-|||
T Consensus 96 ~P~Wl~~~----~~~~~R~~----~~~~----------------~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 96 LPAWLLRK----PDIRLRTN----DPPF----------------LEAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp --GGGGGS----TTS-SSSS-----HHH----------------HHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred hhhhhhcc----cccccccc----chhH----------------HHHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 99999774 34333211 2222 34566777777777777653 37888888
No 10
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.00051 Score=78.29 Aligned_cols=149 Identities=22% Similarity=0.476 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHcCcceEEE-eeeeeeeccCCCcccccchHHHH-HHHHHHcCCcEEEEEeeeccCCCCCCcccccCCh
Q 008030 138 KKAIDASLRALKSAGVEGVMM-DVWWGLVERDQPGHYNWGGYSDL-LEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPK 215 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~~YdWsgY~~l-~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~ 215 (580)
.+.++..|+++|++|+.-|.+ ++-|+..|++ -++|||+--++. ++|+++.||++.. .. |+ +---|.
T Consensus 29 ~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf~~~D~~~l~~a~~~Gl~vil--~t----~P-----~g~~P~ 96 (673)
T COG1874 29 RETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDFTWLDEIFLERAYKAGLYVIL--RT----GP-----TGAPPA 96 (673)
T ss_pred HHHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCcccchHHHHHHHHhcCceEEE--ec----CC-----CCCCch
Confidence 489999999999999999999 9999999985 899999988888 9999999997654 33 11 112799
Q ss_pred hhHhhhhcCCCeeeeCCCCC-------ccccccccccCccccccCCCchhHHHHHHHHHHHHHhhh-hcC--ceeEEEEc
Q 008030 216 WVVEEVDKDQDLVYTDQWGM-------RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDL-LGD--TIVEIQVG 285 (580)
Q Consensus 216 WV~~~g~~dpDi~ytDr~G~-------rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~-l~~--~I~eI~VG 285 (580)
|..+. .|+|+.+|..|. ++.++.| | .|+.+-+---+...+. .++ -|.-.+|.
T Consensus 97 Wl~~~---~PeiL~~~~~~~~~~~g~r~~~~~~~------~---------~Yr~~~~~i~~~irer~~~~~~~v~~w~~d 158 (673)
T COG1874 97 WLAKK---YPEILAVDENGRVRSDGARENICPVS------P---------VYREYLDRILQQIRERLYGNGPAVITWQND 158 (673)
T ss_pred HHhcC---ChhheEecCCCcccCCCccccccccc------H---------HHHHHHHHHHHHHHHHHhccCCceeEEEcc
Confidence 99775 599999999854 3444444 1 4666665544444444 343 45666666
Q ss_pred cccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHH-hC-----CCCcCC
Q 008030 286 MGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAES-AG-----KPEWGS 337 (580)
Q Consensus 286 lGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~-~G-----~~~WG~ 337 (580)
- -|++| -||-+|-.+.|+...++ +| |..|+.
T Consensus 159 n------eY~~~---------------~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t 195 (673)
T COG1874 159 N------EYGGH---------------PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGT 195 (673)
T ss_pred C------ccCCc---------------cccccccHHHHHHHHHhCcchHHhhhhhhhh
Confidence 5 33333 28889999999977765 43 666664
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=97.34 E-value=0.0026 Score=74.16 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHH---HHHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDL---LEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPL 213 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l---~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPL 213 (580)
.++--+.-|+++|++|++.|.+-|-|.+-|+. |++|||+|=++| +++|++.||.+++=..=.-|+-= -.=-|
T Consensus 57 ~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw----~~GGl 131 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEW----NFGGF 131 (840)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeee----cCCCC
Confidence 46778889999999999999999999999985 999999998765 67899999998776555555310 01129
Q ss_pred ChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhc---------CceeEEEE
Q 008030 214 PKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLG---------DTIVEIQV 284 (580)
Q Consensus 214 P~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~---------~~I~eI~V 284 (580)
|.|+.+. |+|.+. |-=+.|.+.|+.|-+...+.+. .-|.-+||
T Consensus 132 P~WL~~~----~~i~~R------------------------s~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQI 183 (840)
T PLN03059 132 PVWLKYV----PGIEFR------------------------TDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQI 183 (840)
T ss_pred chhhhcC----CCcccc------------------------cCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEe
Confidence 9999763 554433 2224577777777666666552 25677776
Q ss_pred ccccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHHhC--CCCcCCCCC
Q 008030 285 GMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAG--KPEWGSTGP 340 (580)
Q Consensus 285 GlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~~G--~~~WG~~GP 340 (580)
|=-|=||...- ---|+--+.-|++.|++.| -|..-..||
T Consensus 184 ------ENEYGs~~~~~-----------~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~ 224 (840)
T PLN03059 184 ------ENEYGPVEWEI-----------GAPGKAYTKWAADMAVKLGTGVPWVMCKQE 224 (840)
T ss_pred ------cccccceeccc-----------CcchHHHHHHHHHHHHHcCCCcceEECCCC
Confidence 55565553211 1225656667888888876 344444444
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=97.23 E-value=0.0011 Score=71.66 Aligned_cols=111 Identities=16% Similarity=0.303 Sum_probs=90.4
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 210 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~ 210 (580)
...+..-.+.+|+.||++|++.+.+.|=|.-++++|++++| +..|+++++.+++.||+..|.|. |
T Consensus 49 a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H----------- 116 (427)
T TIGR03356 49 ACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H----------- 116 (427)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------
Confidence 45567888999999999999999999999999999888888 79999999999999999988886 4
Q ss_pred ccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEE
Q 008030 211 IPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQV 284 (580)
Q Consensus 211 IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 284 (580)
.-||.|+.+. -|-.| +.-++.|.+|.+-..++|.+...- ||.|..+
T Consensus 117 fd~P~~l~~~------------gGw~~----------------~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 117 WDLPQALEDR------------GGWLN----------------RDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CCccHHHHhc------------CCCCC----------------hHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 3499998553 13222 223578999999999999986543 7778765
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.17 E-value=0.014 Score=58.29 Aligned_cols=191 Identities=19% Similarity=0.342 Sum_probs=111.8
Q ss_pred eeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCcccccc
Q 008030 162 WGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYI 241 (580)
Q Consensus 162 WGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyL 241 (580)
|+.+|+ .+|+|||+.-+++++.+++.|++++.-..+..+ -.|.|+.+..
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~~~~-------------------- 51 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVFNLS-------------------- 51 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhhcCC--------------------
Confidence 899998 599999999999999999999999653333322 2789985321
Q ss_pred ccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHH
Q 008030 242 SLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYM 319 (580)
Q Consensus 242 Slg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkym 319 (580)
.+ .-.+...+|++.-..+|++.+.. ++.|..-.-|+ | +.. ..|. +..| ++|+
T Consensus 52 ---~~--------~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~~~~~~~-~------~~~--~~w~-~~~G-----~~~i 105 (254)
T smart00633 52 ---KE--------TLLARLENHIKTVVGRYKGKIYAWDVVNEALHDNGS-G------LRR--SVWY-QILG-----EDYI 105 (254)
T ss_pred ---HH--------HHHHHHHHHHHHHHHHhCCcceEEEEeeecccCCCc-c------ccc--chHH-HhcC-----hHHH
Confidence 00 11366778888888877765432 44443221111 0 111 1232 3445 4688
Q ss_pred HHHHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCccccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccCCc
Q 008030 320 LSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGV 399 (580)
Q Consensus 320 la~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~P~~t~FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~~v 399 (580)
...|+.+.+. .|+ +..|-++ |+..-+ -.+.++++...+.+... ++
T Consensus 106 ~~af~~ar~~---------~P~-----------a~l~~Nd---y~~~~~-----------~~k~~~~~~~v~~l~~~-g~ 150 (254)
T smart00633 106 EKAFRYAREA---------DPD-----------AKLFYND---YNTEEP-----------NAKRQAIYELVKKLKAK-GV 150 (254)
T ss_pred HHHHHHHHHh---------CCC-----------CEEEEec---cCCcCc-----------cHHHHHHHHHHHHHHHC-CC
Confidence 8888766542 121 3334332 221111 03445777777777643 44
Q ss_pred eEEEEeceeeecCCCCCChhhhcccccCCCCCCChHHHHHHHHHcCCEEEEeeccccCC
Q 008030 400 KISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH 458 (580)
Q Consensus 400 ~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfarh~~~l~FTClEM~D~ 458 (580)
+|-+ =|+++|..... .+-+....+++.|++.|..+.+|=++++..
T Consensus 151 ~iDg--iGlQ~H~~~~~------------~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~ 195 (254)
T smart00633 151 PIDG--IGLQSHLSLGS------------PNIAEIRAALDRFASLGLEIQITELDISGY 195 (254)
T ss_pred ccce--eeeeeeecCCC------------CCHHHHHHHHHHHHHcCCceEEEEeecCCC
Confidence 4322 14444432211 112347788888899999999998888764
No 14
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.94 E-value=0.0032 Score=61.04 Aligned_cols=102 Identities=21% Similarity=0.379 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeec-cCCCc---ccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCCh
Q 008030 140 AIDASLRALKSAGVEGVMMDVWWGLVE-RDQPG---HYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPK 215 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDVWWGiVE-~~~P~---~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~ 215 (580)
..++.++.||++|+.-|.+.|.|...+ ...+. .--|..++++++.+++.||+| |+.+|.- |.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~~------------~~ 87 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHNA------------PG 87 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEES------------TT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEeccC------------cc
Confidence 788999999999999999999995444 43333 345778889999999999987 7899952 77
Q ss_pred hhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcCceeEEEE
Q 008030 216 WVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQV 284 (580)
Q Consensus 216 WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~V 284 (580)
|... ..+. ....+..+.|.+|.+.++..|++. +.|.-++|
T Consensus 88 w~~~------------~~~~---------------~~~~~~~~~~~~~~~~la~~y~~~--~~v~~~el 127 (281)
T PF00150_consen 88 WANG------------GDGY---------------GNNDTAQAWFKSFWRALAKRYKDN--PPVVGWEL 127 (281)
T ss_dssp CSSS------------TSTT---------------TTHHHHHHHHHHHHHHHHHHHTTT--TTTEEEES
T ss_pred cccc------------cccc---------------ccchhhHHHHHhhhhhhccccCCC--CcEEEEEe
Confidence 7110 0000 011124566888888899888653 35555544
No 15
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.10 E-value=0.024 Score=62.53 Aligned_cols=112 Identities=17% Similarity=0.303 Sum_probs=91.7
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC----CcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQ----PGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSV 209 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~----P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~ 209 (580)
......-.+..++-||++|++....-+=|.-+++.+ +++-.+..|++|++-+++.|++..|.|.-|
T Consensus 66 A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~---------- 135 (474)
T PRK09852 66 AIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF---------- 135 (474)
T ss_pred cCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC----------
Confidence 456677889999999999999999999999999875 578889999999999999999999998755
Q ss_pred cccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEE
Q 008030 210 SIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQV 284 (580)
Q Consensus 210 ~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 284 (580)
.||.|+.+.. -| +..|.-++.|.+|-+-..++|.+..+- ||.|+.|
T Consensus 136 --~~P~~l~~~~-----------GG----------------W~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 136 --DVPMHLVTEY-----------GS----------------WRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred --CCCHHHHHhc-----------CC----------------CCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 5999985520 11 122444688999999999999998765 7888764
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.87 E-value=0.03 Score=60.75 Aligned_cols=111 Identities=22% Similarity=0.383 Sum_probs=84.4
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-Ccccc---cchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQ-PGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSV 209 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~-P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~ 209 (580)
......-.+..|+-||++|++...+-+=|.-+++.+ .+++| +..|++|++.+++.|++..|.|. |
T Consensus 53 a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H---------- 121 (455)
T PF00232_consen 53 ACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H---------- 121 (455)
T ss_dssp TTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S----------
T ss_pred cccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e----------
Confidence 456678899999999999999999999999999987 77777 99999999999999999888875 4
Q ss_pred cccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEE
Q 008030 210 SIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQV 284 (580)
Q Consensus 210 ~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 284 (580)
.-||.|+.+.| |-.| |.-++.|.+|-+---++|.+..+- ||.|..+
T Consensus 122 -~~~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 122 -FDLPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRVKYWITFNEPNV 169 (455)
T ss_dssp -S--BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTBSEEEEEETHHH
T ss_pred -cccccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCcceEEeccccce
Confidence 34999998753 2222 333688899999889999997654 6666654
No 17
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.42 E-value=0.098 Score=57.54 Aligned_cols=112 Identities=16% Similarity=0.250 Sum_probs=89.1
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDS 208 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~ 208 (580)
+....+....+..++-||++|+..-..-+=|.-+++.|++++| ...|++|++-++++|++-.|.|. |
T Consensus 46 ~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H--------- 115 (467)
T TIGR01233 46 EPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H--------- 115 (467)
T ss_pred CccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C---------
Confidence 3456678889999999999999999999999999998877664 67899999999999999777764 4
Q ss_pred ccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEE
Q 008030 209 VSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQV 284 (580)
Q Consensus 209 ~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 284 (580)
.-||.|+.+. -|-.| |.-++.|.+|-+---++|.+ .+- ||.|..+
T Consensus 116 --~dlP~~L~~~------------GGW~n----------------~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 116 --FDTPEALHSN------------GDFLN----------------RENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred --CCCcHHHHHc------------CCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 4599999653 23322 33467888888887888887 654 7888764
No 18
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=95.36 E-value=0.065 Score=59.16 Aligned_cols=113 Identities=15% Similarity=0.243 Sum_probs=90.0
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC----CcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQ----PGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSV 209 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~----P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~ 209 (580)
...+..-.+..++-||++|++....-+=|.-+++.| +++-.+..|++|++-+++.|++..|-|.-
T Consensus 64 A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H----------- 132 (477)
T PRK15014 64 AVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH----------- 132 (477)
T ss_pred ccCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-----------
Confidence 445667888999999999999999999999999865 57778999999999999999988887753
Q ss_pred cccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEEc
Q 008030 210 SIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQVG 285 (580)
Q Consensus 210 ~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~VG 285 (580)
.-||.|+.+.. -|-.| |.-++.|.+|-+-.-++|.+...- ||.|+.|-
T Consensus 133 -~dlP~~L~~~y-----------GGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 133 -FEMPLHLVQQY-----------GSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred -CCCCHHHHHhc-----------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 35999996530 12212 233688999998888999987765 88998753
No 19
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.038 Score=63.02 Aligned_cols=140 Identities=23% Similarity=0.448 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHH---HHHHcCCcEEEEE-eeeccCCCCCCcccccC
Q 008030 138 KKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLE---MAKRHGLKVQAVM-SFHQCGGNVGDSVSIPL 213 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~---mvr~~GLKlqvvm-SFHqCGGNVGD~~~IPL 213 (580)
++--..-|+++|+.|.+.|.+-|.|.+-|. .|+||||||=.+|.+ +|++.||=+.-=+ .|=+--.|-| -|
T Consensus 48 pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~G-----G~ 121 (649)
T KOG0496|consen 48 PEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFG-----GL 121 (649)
T ss_pred hhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCC-----Cc
Confidence 455567789999999999999999999997 599999999888765 5667777543211 1111112222 28
Q ss_pred ChhhHhhhhcCCCeeeeCCCCCccccccccccCcccccc----CC-Cc-----h-hHHHHHHHHHHHHHhhhhcC-ceeE
Q 008030 214 PKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLK----GR-TP-----V-QCYSDFMRAFKDKFKDLLGD-TIVE 281 (580)
Q Consensus 214 P~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~----GR-Tp-----i-q~Y~DFM~SFr~~F~~~l~~-~I~e 281 (580)
|.|+... |.|.|..-..-.-.|-=.|.-=-+|..+ .+ -| | ..|.++-+++++..++|++. .+..
T Consensus 122 P~wL~~~----pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~ 197 (649)
T KOG0496|consen 122 PWWLRNV----PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLA 197 (649)
T ss_pred chhhhhC----CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEE
Confidence 8777654 7888865554433333333222233111 00 01 1 36999999999999999985 6777
Q ss_pred EEEccc
Q 008030 282 IQVGMG 287 (580)
Q Consensus 282 I~VGlG 287 (580)
+..+.|
T Consensus 198 ~~l~~g 203 (649)
T KOG0496|consen 198 TSLGTG 203 (649)
T ss_pred EecCCC
Confidence 766666
No 20
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=95.22 E-value=0.17 Score=54.13 Aligned_cols=192 Identities=17% Similarity=0.349 Sum_probs=118.3
Q ss_pred eeeeccCCCcccccchHHHHHHHHHHcCCcE--EEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCcccc
Q 008030 162 WGLVERDQPGHYNWGGYSDLLEMAKRHGLKV--QAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYE 239 (580)
Q Consensus 162 WGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl--qvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~E 239 (580)
|...|. .++.|||..=+.+++.+|+.||++ +..+.-|| .|.|+.. |+
T Consensus 69 we~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~q------------~P~W~~~-----------~e------- 117 (345)
T COG3693 69 WEAIEP-ERGRFNFEAADAIANFARKHNMPLHGHTLVWHSQ------------VPDWLFG-----------DE------- 117 (345)
T ss_pred cccccC-CCCccCccchHHHHHHHHHcCCeeccceeeeccc------------CCchhhc-----------cc-------
Confidence 999997 699999999999999999999987 34444442 7888743 11
Q ss_pred ccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccH
Q 008030 240 YISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDK 317 (580)
Q Consensus 240 yLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDk 317 (580)
+.+.--++++++.+..--.+|++-+.+ +|.|+ |-=.| +|.++ .|..-|.|. .
T Consensus 118 -----------~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~-vdd~g-------~~R~s--~w~~~~~gp-----d 171 (345)
T COG3693 118 -----------LSKEALAKMVEEHIKTVVGRYKGSVASWDVVNEA-VDDQG-------SLRRS--AWYDGGTGP-----D 171 (345)
T ss_pred -----------cChHHHHHHHHHHHHHHHHhccCceeEEEecccc-cCCCc-------hhhhh--hhhccCCcc-----H
Confidence 122223578888888888887775443 66665 22222 55543 477777776 9
Q ss_pred HHHHHHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCccccccCCCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccC
Q 008030 318 YMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDAT 397 (580)
Q Consensus 318 ymla~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~P~~t~FF~~~~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~ 397 (580)
|+.-+|+.|.+ ..|+ .-+|.|+ | +-- .--.|-+-|+.+-+..-
T Consensus 172 ~I~~aF~~Are---------adP~-----------AkL~~ND---Y----~ie-------~~~~kr~~~~nlI~~Lk--- 214 (345)
T COG3693 172 YIKLAFHIARE---------ADPD-----------AKLVIND---Y----SIE-------GNPAKRNYVLNLIEELK--- 214 (345)
T ss_pred HHHHHHHHHHh---------hCCC-----------ceEEeec---c----ccc-------CChHHHHHHHHHHHHHH---
Confidence 99999998887 3344 2333332 0 000 01123333444443333
Q ss_pred CceEEEEeceeeecCCCCCChhhhcccccCCCCCCChHHHHHHHHHcCCEEEEeeccccCCC
Q 008030 398 GVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHE 459 (580)
Q Consensus 398 ~v~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfarh~~~l~FTClEM~D~e 459 (580)
+=+++|-|| +..|| ++-+ ++...++-.. ..-|.+-|+.+..|=|+|++-.
T Consensus 215 --ekG~pIDgi----G~QsH---~~~~--~~~~~~~~~a-~~~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 215 --EKGAPIDGI----GIQSH---FSGD--GPSIEKMRAA-LLKFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred --HCCCCccce----eeeee---ecCC--CCCHHHHHHH-HHHHhhcCCCceEEEeeeeccC
Confidence 224556666 44888 3222 2333333333 3444556999999999999976
No 21
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=94.71 E-value=0.14 Score=56.62 Aligned_cols=112 Identities=17% Similarity=0.297 Sum_probs=89.1
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCC----cccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQP----GHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSV 209 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P----~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~ 209 (580)
...+..-.+..++-||++|+..-..-+=|.-|++.|. ++=-...|++|++-+++.|++-.|-|. |
T Consensus 62 a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H---------- 130 (476)
T PRK09589 62 AIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H---------- 130 (476)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C----------
Confidence 5567788999999999999999999999999999762 344578899999999999999888884 5
Q ss_pred cccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEE
Q 008030 210 SIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQV 284 (580)
Q Consensus 210 ~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 284 (580)
.-||.|+.+.. -|- ..|.-++.|.+|-+---++|.+..+. ||.|..+
T Consensus 131 -~dlP~~L~~~y-----------GGW----------------~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 131 -FEMPYHLVTEY-----------GGW----------------RNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred -CCCCHHHHHhc-----------CCc----------------CChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 45999995530 122 22333678888888888899988765 8888764
No 22
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=94.51 E-value=0.11 Score=57.20 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=90.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCc---ccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPG---HYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDS 208 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~---~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~ 208 (580)
+-...+..-.+..++-||++|++.-..-+=|.-|+++|++ +=-+..|++|++-+++.|++-.|.|. |
T Consensus 47 ~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H--------- 116 (469)
T PRK13511 47 DPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H--------- 116 (469)
T ss_pred CcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C---------
Confidence 3355677889999999999999999999999999998765 44578899999999999998887775 4
Q ss_pred ccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEEc
Q 008030 209 VSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQVG 285 (580)
Q Consensus 209 ~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~VG 285 (580)
.-||.|+.+. -|-.|+| -++.|.+|-+-.-++|.| .+. ||.|..+-
T Consensus 117 --~dlP~~L~~~------------GGW~n~~----------------~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 117 --FDTPEALHSN------------GDWLNRE----------------NIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred --CCCcHHHHHc------------CCCCCHH----------------HHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 4699999652 2433333 357888998888999999 875 88887653
No 23
>PLN02998 beta-glucosidase
Probab=94.05 E-value=0.22 Score=55.45 Aligned_cols=112 Identities=19% Similarity=0.363 Sum_probs=90.1
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 210 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~ 210 (580)
...+..-.+.+++-||++|++.-..-+=|.-|+++|++.+| ...|++|++-+++.|++-.|.|. |
T Consensus 77 a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H----------- 144 (497)
T PLN02998 77 ACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H----------- 144 (497)
T ss_pred cccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------
Confidence 45677889999999999999999999999999998877665 66899999999999998887775 4
Q ss_pred ccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEE
Q 008030 211 IPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQV 284 (580)
Q Consensus 211 IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 284 (580)
.-||.|+.+.. -|- ..|.-++.|.+|-+---++|.|..+. ||.|+.+
T Consensus 145 ~dlP~~L~~~y-----------GGW----------------~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 145 FDLPQALEDEY-----------GGW----------------LSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCCHHHHHhh-----------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 46999996631 122 22344688889988888899987765 7778764
No 24
>PLN02814 beta-glucosidase
Probab=94.02 E-value=0.23 Score=55.37 Aligned_cols=112 Identities=18% Similarity=0.298 Sum_probs=90.6
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc---chHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW---GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 210 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdW---sgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~ 210 (580)
...+..-.+..++-||++|++.-..-+=|.-|+++|++++|- ..|++|++-+++.|++-.|-|. |
T Consensus 72 a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H----------- 139 (504)
T PLN02814 72 ASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H----------- 139 (504)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------
Confidence 456778899999999999999999999999999988777775 6799999999999999888875 4
Q ss_pred ccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEE
Q 008030 211 IPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQV 284 (580)
Q Consensus 211 IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 284 (580)
.-||.|+.+.. -|- ..|.-++.|.+|-+---++|.+..+- ||.|..+
T Consensus 140 ~dlP~~L~~~y-----------GGW----------------~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 140 YDLPQSLEDEY-----------GGW----------------INRKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred CCCCHHHHHhc-----------CCc----------------CChhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 46999996630 122 22344688888988888999998765 7778764
No 25
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.50 E-value=1.7 Score=40.61 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=72.1
Q ss_pred HHHHHHHHcCcceEEEeee--eeee------ccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCC
Q 008030 143 ASLRALKSAGVEGVMMDVW--WGLV------ERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLP 214 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmvDVW--WGiV------E~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP 214 (580)
+-++.||.+||+.|++.+= +|.. -...|+- .-.-..++++.+++.|+++.+-++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 4568899999999999765 6642 1111222 34667899999999999999999996 22
Q ss_pred hhhHhhhhcCCCeeeeCCCCC--ccccccccccCccccccCCCchhHHHHHHHHHHHHHhh
Q 008030 215 KWVVEEVDKDQDLVYTDQWGM--RNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKD 273 (580)
Q Consensus 215 ~WV~~~g~~dpDi~ytDr~G~--rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~ 273 (580)
.++ .+.+||=++.|+.|+ +..+....+.-.+++ -+| |.||+..-.++.-+
T Consensus 70 ~~~---~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~---ns~---Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 70 EDA---AERHPEWFVRDADGRPMRGERFGYPGWYTCCL---NSP---YREFLLEQIREILD 121 (132)
T ss_pred hHH---HHhCCceeeECCCCCCcCCCCcCCCCceecCC---Ccc---HHHHHHHHHHHHHH
Confidence 333 457899999999998 334444433222232 133 88887766655543
No 26
>PLN02849 beta-glucosidase
Probab=93.39 E-value=0.33 Score=54.13 Aligned_cols=112 Identities=13% Similarity=0.313 Sum_probs=90.2
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 210 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~ 210 (580)
...+..-.+..++-||++|++.-..-+=|--|+++|.+++| ...|++|++-+++.|++-.|-|. |
T Consensus 74 a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H----------- 141 (503)
T PLN02849 74 ACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H----------- 141 (503)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------
Confidence 45678889999999999999999999999999998766555 66799999999999999888775 5
Q ss_pred ccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEE
Q 008030 211 IPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQV 284 (580)
Q Consensus 211 IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 284 (580)
.-||.|+.+.. -|- ..|.-++.|.+|-+---++|.+..+- ||.|..+
T Consensus 142 ~dlP~~L~~~y-----------GGW----------------~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 142 YDHPQYLEDDY-----------GGW----------------INRRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCCcHHHHHhc-----------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 46999996630 122 22334688999988888999987765 7888764
No 27
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=93.19 E-value=0.86 Score=50.53 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=88.7
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-C---cccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQ-P---GHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSV 209 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~-P---~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~ 209 (580)
...+..-.+..++-||++|++.-..-+=|.-|++.| + ++=-...|++|++-+++.|++-.|.|. |
T Consensus 68 a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H---------- 136 (478)
T PRK09593 68 AIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H---------- 136 (478)
T ss_pred ccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c----------
Confidence 456788899999999999999999999999999976 3 344478899999999999999888775 4
Q ss_pred cccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC--ceeEEEEc
Q 008030 210 SIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD--TIVEIQVG 285 (580)
Q Consensus 210 ~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~VG 285 (580)
.-||.|+.+.. -|-. .|.-++.|.+|-+---++|.+...- ||.|..+-
T Consensus 137 -~dlP~~L~~~~-----------GGW~----------------n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 137 -FDCPMHLIEEY-----------GGWR----------------NRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred -cCCCHHHHhhc-----------CCCC----------------ChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 45999996530 1222 2333678888888888888887765 88887653
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=93.01 E-value=0.36 Score=50.43 Aligned_cols=216 Identities=25% Similarity=0.489 Sum_probs=119.7
Q ss_pred HHHHHHHcCcceEEEe--eeeeeeccCCCcccccchHHHHHHHHHHcCCcEE--EEEeeeccCCCCCCcccccCChhhHh
Q 008030 144 SLRALKSAGVEGVMMD--VWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ--AVMSFHQCGGNVGDSVSIPLPKWVVE 219 (580)
Q Consensus 144 ~L~aLK~~GVdGVmvD--VWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq--vvmSFHqCGGNVGD~~~IPLP~WV~~ 219 (580)
..+++-..-..-|+.. .=|+.+|+ .+++|||+.-+++.+-+++.|++++ +++. |. -.|.||.+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 3444444445555553 78999997 5999999999999999999999996 5554 53 27999987
Q ss_pred hhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhh--hhc--CceeEEEEccccCcccCCC
Q 008030 220 EVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKD--LLG--DTIVEIQVGMGPAGELRYP 295 (580)
Q Consensus 220 ~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~--~l~--~~I~eI~VGlGP~GELRYP 295 (580)
....+|+ .+|.+- +...++++....+|.+ -+. |+|-|+--.-|=.+.||-
T Consensus 93 ~~~~~~~----------~~~~~~---------------~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~- 146 (320)
T PF00331_consen 93 LANGSPD----------EKEELR---------------ARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRD- 146 (320)
T ss_dssp STTSSBH----------HHHHHH---------------HHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCT-
T ss_pred ccCCCcc----------cHHHHH---------------HHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccC-
Confidence 5111110 011111 3334444444444442 111 244444222221122332
Q ss_pred CCCCCCCCCcCCCccceeeccHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCccccccCCCCcccccchhhHHHh
Q 008030 296 SYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWY 375 (580)
Q Consensus 296 SYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~P~~t~FF~~~~G~w~S~YGkFFL~WY 375 (580)
. .| |.-+| +.|....|+.|-+.. | +...|-|+ |+....
T Consensus 147 -----~-~~-~~~lG-----~~yi~~aF~~A~~~~---------P-----------~a~L~~ND---y~~~~~------- 184 (320)
T PF00331_consen 147 -----S-PW-YDALG-----PDYIADAFRAAREAD---------P-----------NAKLFYND---YNIESP------- 184 (320)
T ss_dssp -----S-HH-HHHHT-----TCHHHHHHHHHHHHH---------T-----------TSEEEEEE---SSTTST-------
T ss_pred -----C-hh-hhccc-----HhHHHHHHHHHHHhC---------C-----------CcEEEecc---ccccch-------
Confidence 1 12 12344 688888998877643 2 23444442 222222
Q ss_pred hHHHHhHHHHHHHHHHhhhccCCceEEEEeceeeecCCCCCChhhhcccccCCCCCCChHHHHHHHHHcCCEEEEeeccc
Q 008030 376 SQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEM 455 (580)
Q Consensus 376 S~~Ll~HGdrvL~~A~~vF~~~~v~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mfarh~~~l~FTClEM 455 (580)
.+-++++.+.+.+=. .+|+|- ||=. .+|- ..++- .+.+...++.|+..|+.+++|=|++
T Consensus 185 -----~k~~~~~~lv~~l~~-~gvpId----gIG~----Q~H~---~~~~~----~~~i~~~l~~~~~~Gl~i~ITElDv 243 (320)
T PF00331_consen 185 -----AKRDAYLNLVKDLKA-RGVPID----GIGL----QSHF---DAGYP----PEQIWNALDRFASLGLPIHITELDV 243 (320)
T ss_dssp -----HHHHHHHHHHHHHHH-TTHCS-----EEEE----EEEE---ETTSS----HHHHHHHHHHHHTTTSEEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHHh-CCCccc----eech----hhcc---CCCCC----HHHHHHHHHHHHHcCCceEEEeeee
Confidence 667888888877653 356643 3311 3341 11111 3446677778888999999999999
Q ss_pred cCCCCC
Q 008030 456 RDHEQP 461 (580)
Q Consensus 456 ~D~eqp 461 (580)
++...+
T Consensus 244 ~~~~~~ 249 (320)
T PF00331_consen 244 RDDDNP 249 (320)
T ss_dssp ESSSTT
T ss_pred cCCCCC
Confidence 988765
No 29
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=89.70 E-value=6.4 Score=44.11 Aligned_cols=157 Identities=20% Similarity=0.283 Sum_probs=113.8
Q ss_pred eeccee---cCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCc-ccc---cchHHHHHHHHHHcCCcEEEEE
Q 008030 124 MPLDSV---TMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPG-HYN---WGGYSDLLEMAKRHGLKVQAVM 196 (580)
Q Consensus 124 lPLd~V---~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~-~Yd---WsgY~~l~~mvr~~GLKlqvvm 196 (580)
+|-.++ ..........-.+..++-+|++|+....+-+=|.-+-+.+.+ ..| =..|++||+-+++.|++..|-|
T Consensus 41 ~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL 120 (460)
T COG2723 41 IPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL 120 (460)
T ss_pred cCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 455443 234556677888999999999999999999999999986655 555 4569999999999999888777
Q ss_pred eeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhc
Q 008030 197 SFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLG 276 (580)
Q Consensus 197 SFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~ 276 (580)
+ | ..||.|+.+.+ .|- ..|.-|+.|..|-+---..|.|..+
T Consensus 121 ~-H-----------fd~P~~L~~~y-----------gGW----------------~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 121 Y-H-----------FDLPLWLQKPY-----------GGW----------------ENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred c-c-----------cCCcHHHhhcc-----------CCc----------------cCHHHHHHHHHHHHHHHHHhcCcce
Confidence 5 4 57999998763 122 2344578899999988899998877
Q ss_pred C--ceeEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHH
Q 008030 277 D--TIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAES 329 (580)
Q Consensus 277 ~--~I~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~ 329 (580)
- |..|+.|=+. +-|. .|+ -.|++..+|-.=+-+--.+.++|.+
T Consensus 162 ~W~TFNE~n~~~~----~~y~-----~~~-~~p~~~~~~~~~qa~hh~~lA~A~a 206 (460)
T COG2723 162 YWFTFNEPNVVVE----LGYL-----YGG-HPPGIVDPKAAYQVAHHMLLAHALA 206 (460)
T ss_pred EEEEecchhhhhc----cccc-----ccc-cCCCccCHHHHHHHHHHHHHHHHHH
Confidence 5 7788877554 2121 222 3467777765555555566666665
No 30
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=89.11 E-value=0.63 Score=47.42 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhh
Q 008030 141 IDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWV 217 (580)
Q Consensus 141 l~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV 217 (580)
+...++++..+|+++|.++--|+--.--+|.+|. +-+++++++-+++.|.+ ..+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~----~~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGP----VIHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCc----eEEEECC-Cch-----hHHHHH
Confidence 4556677778899999999988743322566665 99999999999998765 5679995 443 344455
Q ss_pred HhhhhcCCCeeeeCC
Q 008030 218 VEEVDKDQDLVYTDQ 232 (580)
Q Consensus 218 ~~~g~~dpDi~ytDr 232 (580)
.+.+ .|++-.|.
T Consensus 240 ~~~~---~d~~~~d~ 251 (330)
T cd03465 240 ADLG---ADVFSIDV 251 (330)
T ss_pred HHhC---CCeEeecc
Confidence 4443 45555553
No 31
>PRK01060 endonuclease IV; Provisional
Probab=88.03 E-value=1.3 Score=44.19 Aligned_cols=59 Identities=8% Similarity=0.194 Sum_probs=43.0
Q ss_pred eeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccc-----hHHHHHHHHHHcCCcEE
Q 008030 123 MMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWG-----GYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 123 MlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWs-----gY~~l~~mvr~~GLKlq 193 (580)
|+++++.++ . .+.++..|+.++++|.++|++.+. +|..|... .-+++-+++++.||++.
T Consensus 1 ~~~~g~~~~---~--~~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 1 MKLIGAHVS---A--AGGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISPE 64 (281)
T ss_pred CCeEEEeee---c--CCCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 667777664 1 123889999999999999999764 35444332 35668889999999974
No 32
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=83.76 E-value=21 Score=37.51 Aligned_cols=229 Identities=23% Similarity=0.291 Sum_probs=130.1
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeee-e------eccCC------Ccc-cccchHHHHHHHHHHcCCcEEEEEeeec
Q 008030 135 VNRKKAIDASLRALKSAGVEGVMMDVWWG-L------VERDQ------PGH-YNWGGYSDLLEMAKRHGLKVQAVMSFHQ 200 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~GVdGVmvDVWWG-i------VE~~~------P~~-YdWsgY~~l~~mvr~~GLKlqvvmSFHq 200 (580)
+..++.+++-|+.||++|+..|-++||+. . +++.+ +++ -.|.--..+++.+++.||++++=|-|--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 34688999999999999999999999984 1 12111 011 1244556778888999999999885532
Q ss_pred cCCCCCCcccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHh-hhhcCce
Q 008030 201 CGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFK-DLLGDTI 279 (580)
Q Consensus 201 CGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~-~~l~~~I 279 (580)
-..++++..+ --|.|+.. ++++...+...+..+.=||. |. ...=++|+.+--.+.- .| .|
T Consensus 95 ~~~~~~~~~~-~~p~~~~~---~~~~~~~~~~~~~~~~~~ln------P~------~PeVr~~i~~~v~Eiv~~Y---dv 155 (311)
T PF02638_consen 95 NAPDVSHILK-KHPEWFAV---NHPGWVRTYEDANGGYYWLN------PG------HPEVRDYIIDIVKEIVKNY---DV 155 (311)
T ss_pred CCCchhhhhh-cCchhhee---cCCCceeecccCCCCceEEC------CC------CHHHHHHHHHHHHHHHhcC---CC
Confidence 2222222211 25777642 34565555544444444666 31 3456777777666653 34 47
Q ss_pred eEEEEccccCcccCCCCCCCCCCCCcCCCccceeeccHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCccccccC
Q 008030 280 VEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKE 359 (580)
Q Consensus 280 ~eI~VGlGP~GELRYPSYp~~~g~W~fPGiGEFQCYDkymla~Lk~aA~~~G~~~WG~~GP~dAg~Yn~~P~~t~FF~~~ 359 (580)
..|++= --|||.. . + -||.+..+.+++. .|. .++. .|++.
T Consensus 156 DGIhlD-----dy~yp~~---~--~---------g~~~~~~~~y~~~---~g~-----~~~~-------~~~d~------ 195 (311)
T PF02638_consen 156 DGIHLD-----DYFYPPP---S--F---------GYDFPDVAAYEKY---TGK-----DPFS-------SPEDD------ 195 (311)
T ss_pred CeEEec-----ccccccc---c--C---------CCCCccHHHHHHh---cCc-----CCCC-------Cccch------
Confidence 788653 3455532 1 1 1445555566542 110 1110 01110
Q ss_pred CCCcccccchhhHHHhhHHHHhHHHHHHHHHHhhhccCCceEEEEeceeeecCCCCCChhhhcccccCCCCCCChHHHHH
Q 008030 360 NGGWCSPYGEFFLSWYSQMLLDHGERILSSAKAIFDATGVKISVKVAGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQ 439 (580)
Q Consensus 360 ~G~w~S~YGkFFL~WYS~~Ll~HGdrvL~~A~~vF~~~~v~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~ 439 (580)
.+.+|=.+.+-+--.+|-...+++= ..|.+++=+.|+- |.+-.+=|.....
T Consensus 196 ----------~W~~WRr~~I~~~V~~i~~~ik~~k--P~v~~sisp~g~~-----------------~~~y~~~~qD~~~ 246 (311)
T PF02638_consen 196 ----------AWTQWRRDNINNFVKRIYDAIKAIK--PWVKFSISPFGIW-----------------NSAYDDYYQDWRN 246 (311)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEeecch-----------------hhhhhheeccHHH
Confidence 1677777777666666666655543 3577777655551 1233345777777
Q ss_pred HHHHcCCEEEEe
Q 008030 440 MLARHGAIFNFT 451 (580)
Q Consensus 440 mfarh~~~l~FT 451 (580)
-+++--++..++
T Consensus 247 W~~~G~iD~i~P 258 (311)
T PF02638_consen 247 WLKEGYIDYIVP 258 (311)
T ss_pred HHhcCCccEEEe
Confidence 776655666555
No 33
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=83.01 E-value=1.9 Score=44.77 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008030 141 IDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGG 203 (580)
Q Consensus 141 l~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGG 203 (580)
+...++++.++|+++|.+.--|+-..--+|.+|. +-+++++++-+++.|.. + ..|-||.
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~--~--ilH~CG~ 243 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGI--T--VLHICGF 243 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCc--e--EEEECCC
Confidence 3456677889999999888778643333566554 99999999999988732 3 3699973
No 34
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=82.93 E-value=2 Score=43.33 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeecc--CCCc---ccccchHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 008030 139 KAIDASLRALKSAGVEGVMMDVWWGLVER--DQPG---HYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGN 204 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~--~~P~---~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGN 204 (580)
+.+...++++.++|+++|.++-=|+-... -+|. +|-|.+|+++++.+++.|.++ ..|-||+.
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~----~lH~cg~~ 210 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI----VHHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce----EEEECCCH
Confidence 34666778899999999998865554321 1344 445999999999988877543 35999964
No 35
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=82.24 E-value=4.1 Score=44.96 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=60.5
Q ss_pred HHHHHHHHHHH-HcCcceEEEeeeeee------ec---cCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 008030 139 KAIDASLRALK-SAGVEGVMMDVWWGL------VE---RDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDS 208 (580)
Q Consensus 139 ~al~~~L~aLK-~~GVdGVmvDVWWGi------VE---~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~ 208 (580)
..++.+|+.++ .+|+..|-+ ||=+ +. ..+...|||+.-+++++.+.+.|||..+-|+|
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR~--h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f---------- 106 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVRF--HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF---------- 106 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEEE--S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S----------
T ss_pred HHHHHHHHHHHhccCceEEEE--EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe----------
Confidence 57888999997 689999864 4433 21 12223499999999999999999999999999
Q ss_pred ccccCChhhHhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhh
Q 008030 209 VSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL 275 (580)
Q Consensus 209 ~~IPLP~WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l 275 (580)
-|.++.... ...|+ .+..++ |- .-.+.+.|++++|..++.+-.
T Consensus 107 ----~p~~~~~~~---~~~~~-------~~~~~~------pp----~~~~~W~~lv~~~~~h~~~RY 149 (486)
T PF01229_consen 107 ----MPMALASGY---QTVFW-------YKGNIS------PP----KDYEKWRDLVRAFARHYIDRY 149 (486)
T ss_dssp ----B-GGGBSS-----EETT-------TTEE-S-------B----S-HHHHHHHHHHHHHHHHHHH
T ss_pred ----chhhhcCCC---Ccccc-------ccCCcC------Cc----ccHHHHHHHHHHHHHHHHhhc
Confidence 455553321 11111 111222 21 236889999999999987643
No 36
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=81.56 E-value=14 Score=37.63 Aligned_cols=110 Identities=22% Similarity=0.379 Sum_probs=64.9
Q ss_pred HHHHHHHcC-cceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhh
Q 008030 144 SLRALKSAG-VEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVD 222 (580)
Q Consensus 144 ~L~aLK~~G-VdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~ 222 (580)
-|+.+-.+| ||.|.+++.++. ...++|.+.+++.|.| +|+|+|.=.+. .+.|-+..
T Consensus 100 ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~k--vI~S~H~f~~t--------P~~~~l~~-- 156 (253)
T PRK02412 100 LIKAVIKSGLPDYIDVELFSGK-----------DVVKEMVAFAHEHGVK--VVLSYHDFEKT--------PPKEEIVE-- 156 (253)
T ss_pred HHHHHHhcCCCCEEEEeccCCh-----------HHHHHHHHHHHHcCCE--EEEeeCCCCCC--------cCHHHHHH--
Confidence 466666778 999999886531 2356788888888765 78899943211 22332211
Q ss_pred cCCCeeeeCCCCCccccccccccCcccc-ccCCCchhHHHHHHHHHHHHHhhhhcCceeEEEEccccCccc
Q 008030 223 KDQDLVYTDQWGMRNYEYISLGCDTIPV-LKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGEL 292 (580)
Q Consensus 223 ~dpDi~ytDr~G~rn~EyLSlg~D~~pv-l~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GEL 292 (580)
.-.++.++|+|-+-+ ..-+++-+..+ .+ .|..+++.- ...+-=|.++||+.|-+
T Consensus 157 -------------~~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~~-~~~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 157 -------------RLRKMESLGADIVKIAVMPQSEQDVLT-LL-NATREMKEL-YADQPLITMSMGKLGRI 211 (253)
T ss_pred -------------HHHHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHhc-CCCCCEEEEeCCCCchH
Confidence 123566788887765 34455434333 33 334444331 12344578899998854
No 37
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=81.07 E-value=3 Score=44.66 Aligned_cols=53 Identities=32% Similarity=0.481 Sum_probs=39.7
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeec
Q 008030 143 ASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQ 200 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHq 200 (580)
.-|+-||..||.-|.+-|| |.+...+..|...=.++++-++++|||+- |-||-
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~vl--ldfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKVL--LDFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EEE--EEE-S
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeEE--Eeecc
Confidence 3678899999999999997 66654588889989999999999999976 78883
No 38
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=80.88 E-value=2.8 Score=40.74 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccC-CCcccc-------------cchHHHHHHHHHHcCCcEEEEEee-ecc
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERD-QPGHYN-------------WGGYSDLLEMAKRHGLKVQAVMSF-HQC 201 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~-~P~~Yd-------------WsgY~~l~~mvr~~GLKlqvvmSF-HqC 201 (580)
+.+.|...|..||.+||++|.+- .+.|.. +..-|+ +..+++|.+.+++.|+||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~---Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLS---PIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEES---S-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecc---cccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 46789999999999999999885 344432 222222 345688999999999999876665 765
Q ss_pred CCC
Q 008030 202 GGN 204 (580)
Q Consensus 202 GGN 204 (580)
..+
T Consensus 79 ~~~ 81 (316)
T PF00128_consen 79 DDH 81 (316)
T ss_dssp TTS
T ss_pred ccc
Confidence 543
No 39
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.97 E-value=3.6 Score=41.08 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=47.3
Q ss_pred eecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccch--HHHHHHHHHHcCCcEEEE
Q 008030 124 MPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGG--YSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 124 lPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsg--Y~~l~~mvr~~GLKlqvv 195 (580)
+||++... .++....++..++.+|++|.+||++++. + .......++|+. -+++-+++++.||++..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~--~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVD-E--SDERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecC-c--cccchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 45665543 3444557889999999999999999642 0 001134456765 567899999999999865
No 40
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=78.86 E-value=2.9 Score=43.72 Aligned_cols=103 Identities=26% Similarity=0.373 Sum_probs=65.1
Q ss_pred cCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 114 KGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 114 ~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
..++|.|.+..--..- .|..+-.+.+++-|+.+++.||.||.||.. .+++|+-=..|+++++.+-+.+|-
T Consensus 83 ~~KgVgi~lw~~~~~~--~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lm-- 152 (273)
T PF10566_consen 83 KEKGVGIWLWYHSETG--GNVANLEKQLDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLM-- 152 (273)
T ss_dssp HHTT-EEEEEEECCHT--TBHHHHHCCHHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-E--
T ss_pred HHcCCCEEEEEeCCcc--hhhHhHHHHHHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcE--
Confidence 4467777777655431 122222223699999999999999999986 458899999999999999999774
Q ss_pred EEEeeeccCCCCCCcccccCCh-hhHhhhhcCCCeeeeCCCCCccccccccc
Q 008030 194 AVMSFHQCGGNVGDSVSIPLPK-WVVEEVDKDQDLVYTDQWGMRNYEYISLG 244 (580)
Q Consensus 194 vvmSFHqCGGNVGD~~~IPLP~-WV~~~g~~dpDi~ytDr~G~rn~EyLSlg 244 (580)
+-||.|= +|. |- ..-|++ ..++|-|-.||-.+.
T Consensus 153 --vnfHg~~----------kPtG~~----RTyPN~--mT~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 153 --VNFHGAT----------KPTGLR----RTYPNL--MTREGVRGQEYNKWS 186 (273)
T ss_dssp --EEETTS-------------TTHH----HCSTTE--EEE--S--GGGGGTT
T ss_pred --EEecCCc----------CCCccc----ccCccH--HHHHHhhhhhhcccc
Confidence 5799773 453 33 344554 467888888884443
No 41
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=77.50 E-value=3.6 Score=43.97 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=52.6
Q ss_pred CccEEEeeecceecC-----CC----cccCHHHHHH-----------HHHHHHHcCcce-EEEeeeeeeeccCCCcccc-
Q 008030 117 GVPVFVMMPLDSVTM-----SN----TVNRKKAIDA-----------SLRALKSAGVEG-VMMDVWWGLVERDQPGHYN- 174 (580)
Q Consensus 117 ~vpvyVMlPLd~V~~-----~~----~v~~~~al~~-----------~L~aLK~~GVdG-VmvDVWWGiVE~~~P~~Yd- 174 (580)
.+-..+..|++++.. .+ ..++++.+.+ .+++..++|++| |.+...-+-.+-=+|.+|+
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~e 251 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEK 251 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHH
Confidence 355678889986542 11 1234554443 445566789998 6666643222223466666
Q ss_pred --cchHHHHHHHHHHcCCcEEEEEeeeccC
Q 008030 175 --WGGYSDLLEMAKRHGLKVQAVMSFHQCG 202 (580)
Q Consensus 175 --WsgY~~l~~mvr~~GLKlqvvmSFHqCG 202 (580)
|-+++++++-+++.|.++ | .|-||
T Consensus 252 f~~P~~k~i~~~i~~~g~~~--i--lh~cG 277 (378)
T cd03308 252 FYWPSFKKVVEGLAARGQRI--F--LFFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHhcCCCE--E--EEcCC
Confidence 999999999999987542 3 39998
No 42
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=77.31 E-value=17 Score=36.16 Aligned_cols=108 Identities=19% Similarity=0.353 Sum_probs=64.3
Q ss_pred HHHH-HHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhhc
Q 008030 145 LRAL-KSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDK 223 (580)
Q Consensus 145 L~aL-K~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~ 223 (580)
|+.+ +..|+|.|.||++|.. ...++|.+.+++.|- .+|+|+|.=.+.. +.+.|+ +.
T Consensus 84 l~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~--kvI~S~H~f~~tp------~~~~l~-~~--- 140 (228)
T TIGR01093 84 LKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGT--KIIMSYHDFQKTP------SWEEIV-ER--- 140 (228)
T ss_pred HHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCC--EEEEeccCCCCCC------CHHHHH-HH---
Confidence 4554 6789999999998742 235677777777764 5788999432111 122222 21
Q ss_pred CCCeeeeCCCCCccccccccccCcccc-ccCCCchhHHHHHHHHHHHHHhhhhcCceeEEEEccccCccc
Q 008030 224 DQDLVYTDQWGMRNYEYISLGCDTIPV-LKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGEL 292 (580)
Q Consensus 224 dpDi~ytDr~G~rn~EyLSlg~D~~pv-l~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GEL 292 (580)
-.+..++|+|-+-+ ..-+++-+ ....+ +|..++... ..+.=|.++||+.|-+
T Consensus 141 -------------~~~~~~~gaDivKia~~a~~~~D-~~~ll-~~~~~~~~~--~~~p~i~~~MG~~G~~ 193 (228)
T TIGR01093 141 -------------LEKALSYGADIVKIAVMANSKED-VLTLL-EITNKVDEH--ADVPLITMSMGDRGKI 193 (228)
T ss_pred -------------HHHHHHhCCCEEEEEeccCCHHH-HHHHH-HHHHHHHhc--CCCCEEEEeCCCCChh
Confidence 23456788887765 33445422 23333 455555543 2344578899998865
No 43
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=76.55 E-value=2.6 Score=43.58 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGG 203 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGG 203 (580)
...++++.++|+|+|.+.--|+-..--+|..|. +-+++++++-+++ + - ...|-||+
T Consensus 174 ~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~---~--~ilh~cG~ 232 (326)
T cd03307 174 IEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C---P--TILHICGN 232 (326)
T ss_pred HHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C---C--cEEEECCC
Confidence 345666778899999998889844323677777 9999999999998 2 2 33588974
No 44
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=75.90 E-value=12 Score=38.71 Aligned_cols=96 Identities=17% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEee-eeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChh
Q 008030 138 KKAIDASLRALKSAGVEGVMMDV-WWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKW 216 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~W 216 (580)
.++++..+++|..+|++.|.+|= -|+..-...+.+..-.+-+++.+.+++.+...++ ..|-|.||...+-...-+-|
T Consensus 154 a~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~ 231 (332)
T cd03311 154 ALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYE 231 (332)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHH
Confidence 35778889999999999999986 5554332113345556667777777765655554 46999999743211112223
Q ss_pred -hHhh-hhcCCCeeeeCCCCC
Q 008030 217 -VVEE-VDKDQDLVYTDQWGM 235 (580)
Q Consensus 217 -V~~~-g~~dpDi~ytDr~G~ 235 (580)
+++. .+...|.++-|-...
T Consensus 232 ~i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 232 PIAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred HHHHHHHhCCCCEEEEEEcCC
Confidence 2232 244577777766543
No 45
>PLN02361 alpha-amylase
Probab=74.96 E-value=10 Score=41.58 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc-------------chHHHHHHHHHHcCCcEEEEEee-eccC
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW-------------GGYSDLLEMAKRHGLKVQAVMSF-HQCG 202 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~l~~mvr~~GLKlqvvmSF-HqCG 202 (580)
.++.|++.|..||++||++|-+.- +.|..++.-|+- ..+++|++.+++.|+|+.+=+-+ |-||
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P---~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPP---PSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCC---CCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 578999999999999999998765 234444444443 35899999999999999775555 7777
Q ss_pred CCCC
Q 008030 203 GNVG 206 (580)
Q Consensus 203 GNVG 206 (580)
..-|
T Consensus 104 ~~~~ 107 (401)
T PLN02361 104 TTQG 107 (401)
T ss_pred CCCC
Confidence 5433
No 46
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=74.88 E-value=15 Score=41.93 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=63.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCC--cccccc---hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQP--GHYNWG---GYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDS 208 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P--~~YdWs---gY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~ 208 (580)
.+...-..+.+++-||++||++-..-+-|.-+=+.|. +..|.. +|+.|.+-..+.|++-.|-| ||
T Consensus 86 a~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH--------- 155 (524)
T KOG0626|consen 86 AVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH--------- 155 (524)
T ss_pred echhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec---------
Confidence 3444557888999999999999999999999988887 568876 59999999999999988887 56
Q ss_pred ccccCChhhHhh
Q 008030 209 VSIPLPKWVVEE 220 (580)
Q Consensus 209 ~~IPLP~WV~~~ 220 (580)
--||+|+.++
T Consensus 156 --wDlPq~LeDe 165 (524)
T KOG0626|consen 156 --WDLPQALEDE 165 (524)
T ss_pred --CCCCHHHHHH
Confidence 3499999664
No 47
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=74.57 E-value=51 Score=32.61 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=74.5
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhhc
Q 008030 144 SLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDK 223 (580)
Q Consensus 144 ~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~ 223 (580)
-|+.+-.+|+|.|.||..+ .-.+++.+.+++.| ..+|+|+|.-.+.. +.+.|..-
T Consensus 81 ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~--~kiI~S~H~f~~tp------~~~~l~~~---- 135 (225)
T cd00502 81 LLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGN--TKIIGSYHDFSGTP------SDEELVSR---- 135 (225)
T ss_pred HHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCC--CEEEEEeccCCCCc------CHHHHHHH----
Confidence 4566667789999998755 23566666666554 55788999554332 23333311
Q ss_pred CCCeeeeCCCCCccccccccccCccccc-cCCCchhHHHHHHHHHHHHHhhhhcCceeEEEEccccCcccC-CCCCCCCC
Q 008030 224 DQDLVYTDQWGMRNYEYISLGCDTIPVL-KGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELR-YPSYPEQN 301 (580)
Q Consensus 224 dpDi~ytDr~G~rn~EyLSlg~D~~pvl-~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELR-YPSYp~~~ 301 (580)
-.++-++|+|-+-+- .-+++-+ -.+.+ .|..++.... .+.=|.++||+.|.+- -=+.--..
T Consensus 136 -------------~~~~~~~gadivKla~~~~~~~D-~~~ll-~~~~~~~~~~--~~p~i~~~MG~~G~~SRil~~~~gs 198 (225)
T cd00502 136 -------------LEKMAALGADIVKIAVMANSIED-NLRLL-KFTRQVKNLY--DIPLIAINMGELGKLSRILSPVFGS 198 (225)
T ss_pred -------------HHHHHHhCCCEEEEEecCCCHHH-HHHHH-HHHHHHHhcC--CCCEEEEEcCCCCchhhccccccCC
Confidence 123334577766652 3333322 22333 3444444322 4455788999999642 21111222
Q ss_pred CCCcCCCccceeeccHHHHHHHHH
Q 008030 302 GTWKFPGIGAFQCYDKYMLSSLKA 325 (580)
Q Consensus 302 g~W~fPGiGEFQCYDkymla~Lk~ 325 (580)
-+.|..+|+-..-.+.-+..+++
T Consensus 199 -~~t~~~~~~~sApGQ~~~~~l~~ 221 (225)
T cd00502 199 -PLTYASLPEPSAPGQLSVEELKQ 221 (225)
T ss_pred -cccccCCCCCCCCCCcCHHHHHH
Confidence 45666666555555444445544
No 48
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.56 E-value=3 Score=38.40 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=36.6
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEE
Q 008030 145 LRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVM 196 (580)
Q Consensus 145 L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvm 196 (580)
|+.+|++|+++|++..++..-.... =...+++.+++++.||++..+-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~i~~~~ 47 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-----DDEAEELRRLLEDYGLKIASLH 47 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-----hHHHHHHHHHHHHcCCeEEEEe
Confidence 6889999999999999887544211 2467899999999999965543
No 49
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=72.61 E-value=12 Score=38.95 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=54.0
Q ss_pred CccEEEeeecc---eecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 117 GVPVFVMMPLD---SVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 117 ~vpvyVMlPLd---~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
.+||+||+=-- -+-+ -...+.|..+++.+|++|+|||.+= ..- .+++.|...=++|.+.++ ||++-
T Consensus 51 ~ipv~vMIRPR~gdF~Ys---~~E~~~M~~di~~~~~~GadGvV~G----~L~--~dg~vD~~~~~~Li~~a~--~~~vT 119 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYS---DGEFAAMLEDIATVRELGFPGLVTG----VLD--VDGHVDMPRMRKIMAAAG--PLAVT 119 (248)
T ss_pred CCCeEEEEecCCCCCCCC---HHHHHHHHHHHHHHHHcCCCEEEEe----eEC--CCCCcCHHHHHHHHHHhc--CCceE
Confidence 58999998442 1111 1345689999999999999999874 333 488999999999999985 67775
Q ss_pred EEEeeecc
Q 008030 194 AVMSFHQC 201 (580)
Q Consensus 194 vvmSFHqC 201 (580)
-=+.|-.|
T Consensus 120 FHRAfD~~ 127 (248)
T PRK11572 120 FHRAFDMC 127 (248)
T ss_pred Eechhhcc
Confidence 44555443
No 50
>PHA00442 host recBCD nuclease inhibitor
Probab=72.06 E-value=3.4 Score=34.17 Aligned_cols=28 Identities=43% Similarity=0.884 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHc
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRH 188 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~ 188 (580)
..-|++|++.||| ||+||.+..+|+-..
T Consensus 29 ~~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 29 NEFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred hHHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 3467888888987 899999999998653
No 51
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=72.00 E-value=6.5 Score=39.42 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccc--hHHHHHHHHHHcCCcEEEE
Q 008030 138 KKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWG--GYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWs--gY~~l~~mvr~~GLKlqvv 195 (580)
.-.+...|+.++++|.++|++.++.. - ..+..++|+ .-.++.+++++.||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET-D--DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc-c--chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 45688899999999999999965431 1 123445554 3567888899999999865
No 52
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=71.92 E-value=28 Score=34.19 Aligned_cols=131 Identities=16% Similarity=0.300 Sum_probs=72.2
Q ss_pred CccEEEeeecceecCCCccc-CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEE
Q 008030 117 GVPVFVMMPLDSVTMSNTVN-RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 117 ~vpvyVMlPLd~V~~~~~v~-~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvv 195 (580)
.+|+-++ +-+...++... ..+.-..-|+.+-.+|++.|.|+++ .+.-+.......++ -+..+|
T Consensus 54 ~~piI~T--~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~--~~~~iI 117 (224)
T PF01487_consen 54 DLPIIFT--VRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARK--GGTKII 117 (224)
T ss_dssp TSEEEEE----BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHH--TTSEEE
T ss_pred CCCEEEE--ecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhh--CCCeEE
Confidence 4554443 44455566554 2344444666677778999888765 12222222333444 455678
Q ss_pred EeeeccCCCCCCcccccCChh--hHhhhhcCCCeeeeCCCCCccccccccccCcccc-ccCCCchhHHHHHHHHHHHHHh
Q 008030 196 MSFHQCGGNVGDSVSIPLPKW--VVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPV-LKGRTPVQCYSDFMRAFKDKFK 272 (580)
Q Consensus 196 mSFHqCGGNVGD~~~IPLP~W--V~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pv-l~GRTpiq~Y~DFM~SFr~~F~ 272 (580)
+|+|-..+ -|.| +.+. -.+...+|+|-+-+ ...+++-+... +..|..++.
T Consensus 118 ~S~H~f~~---------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~ 170 (224)
T PF01487_consen 118 LSYHDFEK---------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFR 170 (224)
T ss_dssp EEEEESS------------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHH
T ss_pred EEeccCCC---------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHh
Confidence 99994442 3444 2222 23445677786665 45566544444 555666666
Q ss_pred hhhcCceeEEEEccccCccc
Q 008030 273 DLLGDTIVEIQVGMGPAGEL 292 (580)
Q Consensus 273 ~~l~~~I~eI~VGlGP~GEL 292 (580)
.. ..+.=|.++||+.|.+
T Consensus 171 ~~--~~~p~i~~~MG~~G~~ 188 (224)
T PF01487_consen 171 EE--PDIPVIAISMGELGRI 188 (224)
T ss_dssp HH--TSSEEEEEEETGGGHH
T ss_pred hc--cCCcEEEEEcCCCchh
Confidence 65 5677889999999864
No 53
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.61 E-value=10 Score=39.10 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=66.0
Q ss_pred cCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 114 KGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 114 ~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
....+|+.+|.=...|- .-.+++-++.+|++||+||-++ + .-+....++++.+++.||++.
T Consensus 86 ~~~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip----------D--Lp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 86 KDPTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP----------D--LPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred cCCCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC----------C--CCHHHHHHHHHHHHHcCCcEE
Confidence 44568988887664332 2367788999999999999995 1 123578899999999999999
Q ss_pred EEEeeeccCCCCCCcccccCChhhHhhhhcCCC-eeeeCCCCC
Q 008030 194 AVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQD-LVYTDQWGM 235 (580)
Q Consensus 194 vvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpD-i~ytDr~G~ 235 (580)
+.++=. .-+..+..+.+..++ |+|..+.|.
T Consensus 147 ~lvap~------------t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 147 FLVAPT------------TTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred EEeCCC------------CCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 877654 135677777777777 555566553
No 54
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=71.08 E-value=4.2 Score=42.08 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGG 203 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGG 203 (580)
...++++..+||++|.+.-=|+--.--+|..|. +-+++++++-+++. ....|-||+
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~------~~ilH~cG~ 241 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL------PTILHICGD 241 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC------CcEEEECCC
Confidence 445666778999999887777632223566665 89999999999875 234688963
No 55
>smart00642 Aamy Alpha-amylase domain.
Probab=69.28 E-value=23 Score=33.99 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=49.5
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeecc-CCCccc-------------ccchHHHHHHHHHHcCCcEEEEEeee
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVER-DQPGHY-------------NWGGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~-~~P~~Y-------------dWsgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
..-+.+.+.+.|..||++||++|-+---+--... .....| .....++|.+.+++.|+||..=+-+-
T Consensus 14 ~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 14 GGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3456889999999999999999976543222110 011111 34567899999999999999888887
Q ss_pred ccCC
Q 008030 200 QCGG 203 (580)
Q Consensus 200 qCGG 203 (580)
-|+.
T Consensus 94 H~~~ 97 (166)
T smart00642 94 HTSD 97 (166)
T ss_pred CCCC
Confidence 7765
No 56
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=68.38 E-value=4.7 Score=29.33 Aligned_cols=18 Identities=50% Similarity=0.739 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCcceEEEe
Q 008030 142 DASLRALKSAGVEGVMMD 159 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvD 159 (580)
.+..++|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345678889999999997
No 57
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=66.24 E-value=14 Score=36.57 Aligned_cols=53 Identities=19% Similarity=0.478 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cc--chHHHHHHHHHHcCCcEEEEEeee
Q 008030 140 AIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY--NW--GGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y--dW--sgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
.++..|+.++++|+++|++ |+- .+..| ++ ..=++|.+..++.||++..+...|
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 5889999999999999998 331 11122 12 145778889999999986544444
No 58
>PLN02229 alpha-galactosidase
Probab=65.14 E-value=13 Score=41.33 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=49.8
Q ss_pred CHHHHHHHHHH-----HHHcCcceEEEeeeeeeeccCC-------CcccccchHHHHHHHHHHcCCcEEEEEe--eeccC
Q 008030 137 RKKAIDASLRA-----LKSAGVEGVMMDVWWGLVERDQ-------PGHYNWGGYSDLLEMAKRHGLKVQAVMS--FHQCG 202 (580)
Q Consensus 137 ~~~al~~~L~a-----LK~~GVdGVmvDVWWGiVE~~~-------P~~YdWsgY~~l~~mvr~~GLKlqvvmS--FHqCG 202 (580)
+.+.|+...++ ||.+|.+-|.||-=|--.++.. |.+|- +|-+.|++.|++.|||+=.... ...|+
T Consensus 78 ~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC~ 156 (427)
T PLN02229 78 NETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTCQ 156 (427)
T ss_pred CHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCcccC
Confidence 56777777777 5999999999987553333322 33444 6899999999999999855443 35677
Q ss_pred CCCCC
Q 008030 203 GNVGD 207 (580)
Q Consensus 203 GNVGD 207 (580)
|+.|.
T Consensus 157 ~~pGS 161 (427)
T PLN02229 157 VRPGS 161 (427)
T ss_pred CCCCC
Confidence 76554
No 59
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=64.73 E-value=15 Score=36.21 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEE
Q 008030 139 KAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqv 194 (580)
-.++..|+.+|++|.+||++.. | ++. .-.++.+++++.||++..
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~---------~--~~~-~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLF---------P--YDW-DAEALKARLAAAGLEQVL 57 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecC---------C--ccC-CHHHHHHHHHHcCCeEEE
Confidence 3588899999999999999842 1 122 257788899999999864
No 60
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=64.05 E-value=15 Score=37.15 Aligned_cols=55 Identities=27% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeec---cCCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVE---RDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE---~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
+..|+.||++|++.|.+.+= +.-| +-. +..+|..+.+.++.++++|+++.+-+-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 45788999999999988744 3211 111 2468899999999999999987666555
No 61
>PLN02591 tryptophan synthase
Probab=64.02 E-value=20 Score=36.95 Aligned_cols=88 Identities=17% Similarity=0.309 Sum_probs=63.9
Q ss_pred CCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEE
Q 008030 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 116 ~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvv 195 (580)
..+|+.+|.=.+.|- .-.+++=++.+|++||+||-++ ..-+..-.++.+.+++.||.....
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~Gviip------------DLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVP------------DLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeC------------CCCHHHHHHHHHHHHHcCCeEEEE
Confidence 457887887664332 3478888999999999999987 123466778999999999999998
Q ss_pred EeeeccCCCCCCcccccCChhhHhhhhcCCCeeee-CCCC
Q 008030 196 MSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYT-DQWG 234 (580)
Q Consensus 196 mSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~yt-Dr~G 234 (580)
.+-. .-+..+..+.+..++..|. .+.|
T Consensus 138 v~Pt------------t~~~ri~~ia~~~~gFIY~Vs~~G 165 (250)
T PLN02591 138 TTPT------------TPTERMKAIAEASEGFVYLVSSTG 165 (250)
T ss_pred eCCC------------CCHHHHHHHHHhCCCcEEEeeCCC
Confidence 8764 1346778877766665543 5444
No 62
>PRK10658 putative alpha-glucosidase; Provisional
Probab=63.44 E-value=2.4e+02 Score=33.26 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCcccccc-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCccc
Q 008030 138 KKAIDASLRALKSAG--VEGVMMDVWWGLVERDQPGHYNWG-----GYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVS 210 (580)
Q Consensus 138 ~~al~~~L~aLK~~G--VdGVmvDVWWGiVE~~~P~~YdWs-----gY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~ 210 (580)
.+.+..-++.+++.| +|.|.+|+-|.--- .-+.|.|. .-+++++-.++.|+|+.+++-=+
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~--~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~----------- 348 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWMKEF--QWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPY----------- 348 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhhcCC--ceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCC-----------
Confidence 456777777777654 68999999884211 11245553 45788888999999987665322
Q ss_pred ccCChhhHhhhhcCCCeeeeCCCCCc
Q 008030 211 IPLPKWVVEEVDKDQDLVYTDQWGMR 236 (580)
Q Consensus 211 IPLP~WV~~~g~~dpDi~ytDr~G~r 236 (580)
|..-.-+.+++.+ .+.|.++.+|..
T Consensus 349 i~~~s~~f~e~~~-~gy~vk~~~G~~ 373 (665)
T PRK10658 349 IAQKSPLFKEGKE-KGYLLKRPDGSV 373 (665)
T ss_pred cCCCchHHHHHHH-CCeEEECCCCCE
Confidence 1111234445443 367777776653
No 63
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=63.31 E-value=5.2 Score=39.41 Aligned_cols=67 Identities=25% Similarity=0.409 Sum_probs=38.7
Q ss_pred cEEE-eeecceecCC----------Cccc-CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHH
Q 008030 119 PVFV-MMPLDSVTMS----------NTVN-RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAK 186 (580)
Q Consensus 119 pvyV-MlPLd~V~~~----------~~v~-~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr 186 (580)
|+-| +||+..|+.. ++.+ -++.|++.|.+||+.||..|-+ ++|...=..|.+. +|.+.++
T Consensus 26 P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~ 97 (168)
T PF05706_consen 26 PIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQ 97 (168)
T ss_dssp ----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHH
T ss_pred ceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHH
Confidence 4444 5777766532 2222 3578999999999999999866 7776655666655 5668999
Q ss_pred HcCCcEE
Q 008030 187 RHGLKVQ 193 (580)
Q Consensus 187 ~~GLKlq 193 (580)
+.|++|+
T Consensus 98 ~~Gi~~~ 104 (168)
T PF05706_consen 98 ARGIAWH 104 (168)
T ss_dssp HTT-EEE
T ss_pred HcCCEEE
Confidence 9998763
No 64
>PRK08508 biotin synthase; Provisional
Probab=62.71 E-value=49 Score=34.11 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEE-eeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEE
Q 008030 137 RKKAIDASLRALKSAGVEGVMM-DVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVM 196 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvm 196 (580)
.++.+.+..+.+++.|+..|.+ +-+= ++....+.+|.++++.||+.++++.+..
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i~~ 95 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHLIA 95 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEEEe
Confidence 4678888888888999998865 2221 2234578899999999999987765433
No 65
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=62.61 E-value=18 Score=35.91 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccC-CCcccccch--HHHHHHHHHHcCCcEEEE
Q 008030 140 AIDASLRALKSAGVEGVMMDVWWGLVERD-QPGHYNWGG--YSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDVWWGiVE~~-~P~~YdWsg--Y~~l~~mvr~~GLKlqvv 195 (580)
.+...|+.++++|+++|++.+. +.. .....+|+. -++|.+++++.||++..+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 6788999999999999999532 211 123346754 578999999999999865
No 66
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=62.36 E-value=21 Score=36.08 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=47.0
Q ss_pred CccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEE
Q 008030 117 GVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVM 196 (580)
Q Consensus 117 ~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvm 196 (580)
.+|+.+|.=++.+- ...+++-++.++++||+||.+.-- | + ..-.++++.+|+.|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 57888885543221 234677899999999999999411 1 1 256789999999999999999
Q ss_pred eee
Q 008030 197 SFH 199 (580)
Q Consensus 197 SFH 199 (580)
+-+
T Consensus 137 ~P~ 139 (242)
T cd04724 137 APT 139 (242)
T ss_pred CCC
Confidence 854
No 67
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=61.74 E-value=19 Score=41.31 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=42.5
Q ss_pred CHHHHHHHH-HHHHHcCcceEEE-eeeeeeeccCCCcccccch-----------------HHHHHHHHHHcCCcEEEEEe
Q 008030 137 RKKAIDASL-RALKSAGVEGVMM-DVWWGLVERDQPGHYNWGG-----------------YSDLLEMAKRHGLKVQAVMS 197 (580)
Q Consensus 137 ~~~al~~~L-~aLK~~GVdGVmv-DVWWGiVE~~~P~~YdWsg-----------------Y~~l~~mvr~~GLKlqvvmS 197 (580)
+.++|...| ..||++||+.|.+ +|-. .|...+|.| .++|++.+++.|+||..=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e------~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAE------HPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccc------CCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 467888886 9999999999998 7642 233334433 78999999999999876666
Q ss_pred e
Q 008030 198 F 198 (580)
Q Consensus 198 F 198 (580)
|
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 6
No 68
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=60.81 E-value=20 Score=37.33 Aligned_cols=91 Identities=22% Similarity=0.426 Sum_probs=64.3
Q ss_pred cCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 114 KGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 114 ~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
....+|+.+|.=.+.|- ...+++-++.+|++||+||.++ +=| +....++.+.+++.||.+.
T Consensus 84 ~~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIip--------DLP----~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 84 KEPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIP--------DLP----PEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HCTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEET--------TSB----GGGHHHHHHHHHHTT-EEE
T ss_pred cCCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEc--------CCC----hHHHHHHHHHHHHcCCeEE
Confidence 56889999998776544 2467788999999999999874 222 4567899999999999999
Q ss_pred EEEeeeccCCCCCCcccccCChhhHhhhhcCCCeee-eCCCCC
Q 008030 194 AVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVY-TDQWGM 235 (580)
Q Consensus 194 vvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~y-tDr~G~ 235 (580)
..++=. .-+..+..+.+......| ..+.|.
T Consensus 145 ~lv~p~------------t~~~Ri~~i~~~a~gFiY~vs~~Gv 175 (259)
T PF00290_consen 145 PLVAPT------------TPEERIKKIAKQASGFIYLVSRMGV 175 (259)
T ss_dssp EEEETT------------S-HHHHHHHHHH-SSEEEEESSSSS
T ss_pred EEECCC------------CCHHHHHHHHHhCCcEEEeeccCCC
Confidence 888754 135577776666566444 466664
No 69
>PLN02389 biotin synthase
Probab=60.73 E-value=16 Score=39.73 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCcceEEEeee--eeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 142 DASLRALKSAGVEGVMMDVW--WGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVW--WGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
+.+|++||++|+|.+.+.+= ...+.+-.+ .-+|..+.+.++.+++.|+++-
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~s~e~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TRSYDDRLETLEAVREAGISVC 230 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CCCHHHHHHHHHHHHHcCCeEe
Confidence 46889999999999988421 111111112 2389999999999999999873
No 70
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=60.70 E-value=5.7 Score=40.93 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=38.8
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCc---ccccchHHHHHHHHHHcCCcEEEEEeeeccC
Q 008030 143 ASLRALKSAGVEGVMMDVWWGLVERDQPG---HYNWGGYSDLLEMAKRHGLKVQAVMSFHQCG 202 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~---~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCG 202 (580)
..++++..+|+|+|.+-- ....--+|. +|-+-+++++++.+++.|.+ ..-+|-||
T Consensus 186 ~~~~~~~~~G~d~i~~~d--~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG 243 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFD--SSGSLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICG 243 (343)
T ss_dssp HHHHHHHHTT-SEEEEEE--TTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETT
T ss_pred HHHHHHHHhCCCcccccc--cccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECC
Confidence 445677899999995443 222223344 67899999999999999985 45689998
No 71
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=59.35 E-value=1.4e+02 Score=31.13 Aligned_cols=83 Identities=10% Similarity=0.148 Sum_probs=56.1
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccc-----chHHHHHHHHHHcCCcEEEEEeeeccCCCCCCc
Q 008030 136 NRKKAIDASLRALKSAG--VEGVMMDVWWGLVERDQPGHYNW-----GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDS 208 (580)
Q Consensus 136 ~~~~al~~~L~aLK~~G--VdGVmvDVWWGiVE~~~P~~YdW-----sgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~ 208 (580)
.+.+.+..-++.+++.| +|.|.+|.-|-- .-+.|.| -.-+++++-+++.|+|+.+++.=+-+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~------- 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFIN------- 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeC-------
Confidence 45678899999999988 789999986632 2233444 45678888899999987766654422
Q ss_pred ccccCChhhHhhhhcCCCeeeeCCCC
Q 008030 209 VSIPLPKWVVEEVDKDQDLVYTDQWG 234 (580)
Q Consensus 209 ~~IPLP~WV~~~g~~dpDi~ytDr~G 234 (580)
.-.=+.+++.+ .+++.++..|
T Consensus 96 ----~~s~~~~e~~~-~g~~vk~~~g 116 (303)
T cd06592 96 ----TDSENFREAVE-KGYLVSEPSG 116 (303)
T ss_pred ----CCCHHHHhhhh-CCeEEECCCC
Confidence 11123344433 5788899888
No 72
>PRK09989 hypothetical protein; Provisional
Probab=59.10 E-value=24 Score=35.14 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEE
Q 008030 140 AIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqv 194 (580)
.|...|+++|++|.+||++-. +..++ -+++.+++++.||++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYS---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCC---HHHHHHHHHHcCCcEEE
Confidence 578899999999999999932 22234 35788889999999763
No 73
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=57.37 E-value=30 Score=35.69 Aligned_cols=87 Identities=13% Similarity=0.270 Sum_probs=58.8
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEee-eeeeeccCCCcccccc-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 008030 135 VNRKKAIDASLRALKSAG--VEGVMMDV-WWGLVERDQPGHYNWG-----GYSDLLEMAKRHGLKVQAVMSFHQCGGNVG 206 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~G--VdGVmvDV-WWGiVE~~~P~~YdWs-----gY~~l~~mvr~~GLKlqvvmSFHqCGGNVG 206 (580)
-.+.+.+..-++.+|++| +|.|.+|. |+ ...+-+.|+|. .-+++++-+++.|+|+..++ |-. |+
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~---~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~--~P~---i~ 91 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM---KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWI--NPY---IA 91 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc---cCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEe--cCC---CC
Confidence 356788999999999999 89999998 55 21111245555 68899999999999965554 422 22
Q ss_pred CcccccCChhhHhhhhcCCCeeeeCCCCCc
Q 008030 207 DSVSIPLPKWVVEEVDKDQDLVYTDQWGMR 236 (580)
Q Consensus 207 D~~~IPLP~WV~~~g~~dpDi~ytDr~G~r 236 (580)
.+. | +-+++. +++.|.+|.+|..
T Consensus 92 ~~~----~--~~~e~~-~~g~~v~~~~g~~ 114 (308)
T cd06593 92 QKS----P--LFKEAA-EKGYLVKKPDGSV 114 (308)
T ss_pred CCc----h--hHHHHH-HCCeEEECCCCCe
Confidence 111 2 345544 3688998887763
No 74
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=56.55 E-value=32 Score=37.61 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeee
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
+.+..++.++..|++|+||..+++. .+..+.+..-..+++.++..|+||-..+=++
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~ 70 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKLFFSFDMN 70 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 5678899999999999999999996 3455778888899999999997765555544
No 75
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=56.24 E-value=30 Score=39.21 Aligned_cols=61 Identities=23% Similarity=0.366 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccch-----------------HHHHHHHHHHcCCcEEEEEeee
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGG-----------------YSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsg-----------------Y~~l~~mvr~~GLKlqvvmSFH 199 (580)
+.++|...|..||++||++|.+-= |.| .|+.++|.| .++|++.+++.|++|..=+-|.
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 567899999999999999997631 122 355567754 7999999999999998777775
Q ss_pred ccC
Q 008030 200 QCG 202 (580)
Q Consensus 200 qCG 202 (580)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 454
No 76
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=55.83 E-value=1.1e+02 Score=33.19 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhh
Q 008030 138 KKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWV 217 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV 217 (580)
.++++.|.+.|.+-|||++-+.--- |=---|+.+..+++.. |.-.+-||-++
T Consensus 142 ~~ay~eq~~~Li~gG~D~iLiET~~-----------D~l~~KaA~~a~~~~~-----------------~~~~~~LPv~~ 193 (311)
T COG0646 142 VEAYREQVEGLIDGGADLILIETIF-----------DTLNAKAAVFAAREVF-----------------EELGVRLPVMI 193 (311)
T ss_pred HHHHHHHHHHHHhCCCcEEEEehhc-----------cHHHHHHHHHHHHHHH-----------------HhcCCcccEEE
Confidence 3688999999999999999775433 3334456666666543 22223344443
Q ss_pred HhhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcCceeEEEEcccc
Q 008030 218 VEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGP 288 (580)
Q Consensus 218 ~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP 288 (580)
...++| +|+ .+.|.|| .+|+.|++.- +-.+..++-++||
T Consensus 194 --------s~Ti~~-sG~--------------tl~Gq~~----~a~~~~l~~~-----~~~~vGlNCa~Gp 232 (311)
T COG0646 194 --------SGTITD-SGR--------------TLSGQTI----EAFLNSLEHL-----GPDAVGLNCALGP 232 (311)
T ss_pred --------EEEEec-Cce--------------ecCCCcH----HHHHHHhhcc-----CCcEEeeccccCH
Confidence 123344 565 6778885 4555555543 4577888888888
No 77
>PLN02808 alpha-galactosidase
Probab=54.70 E-value=23 Score=38.90 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=45.3
Q ss_pred CHHHHHHHHHH-----HHHcCcceEEEeeeeeeeccCCCccccc------chHHHHHHHHHHcCCcEEEEEe
Q 008030 137 RKKAIDASLRA-----LKSAGVEGVMMDVWWGLVERDQPGHYNW------GGYSDLLEMAKRHGLKVQAVMS 197 (580)
Q Consensus 137 ~~~al~~~L~a-----LK~~GVdGVmvDVWWGiVE~~~P~~YdW------sgY~~l~~mvr~~GLKlqvvmS 197 (580)
+.+.|+....+ ||.+|.+-|.||-=|-..++...+..-+ +|-+.|++.|++.|||+=....
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~ 118 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSD 118 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEec
Confidence 56777777777 6999999999987665544544343222 6899999999999999866543
No 78
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=54.13 E-value=34 Score=39.05 Aligned_cols=64 Identities=23% Similarity=0.475 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCcceEEE-ee---------------eeeeecc--CCC-ccc---------ccchHHHHHHHHHHcCC
Q 008030 139 KAIDASLRALKSAGVEGVMM-DV---------------WWGLVER--DQP-GHY---------NWGGYSDLLEMAKRHGL 190 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmv-DV---------------WWGiVE~--~~P-~~Y---------dWsgY~~l~~mvr~~GL 190 (580)
..+...|..||++||+.|.+ +| -||.-=. -.| ..| .....++|++.+.+.|+
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 45667899999999999976 22 2553210 000 000 02458899999999999
Q ss_pred cEEEEEee-eccC
Q 008030 191 KVQAVMSF-HQCG 202 (580)
Q Consensus 191 KlqvvmSF-HqCG 202 (580)
||..=+-| |-|+
T Consensus 244 ~VilDvV~NH~~~ 256 (605)
T TIGR02104 244 RVIMDVVYNHTYS 256 (605)
T ss_pred EEEEEEEcCCccC
Confidence 99888888 5443
No 79
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=53.13 E-value=27 Score=34.68 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcE
Q 008030 140 AIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKV 192 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 192 (580)
.++..|++++++|.+||++ |+ |.. ...+++.+++++.||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl---~~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEF---MF------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEE---cC------CCC---CCHHHHHHHHHHcCCcE
Confidence 5888999999999999999 22 111 24788899999999997
No 80
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=52.83 E-value=35 Score=35.23 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=44.5
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcc---cccc---hHHHHHHHHHHcCCc-----EEEEEeeec
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGH---YNWG---GYSDLLEMAKRHGLK-----VQAVMSFHQ 200 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~---YdWs---gY~~l~~mvr~~GLK-----lqvvmSFHq 200 (580)
+++|.-...+++-.++|+ .|+..|++|||=|-- ..|-. +.+. ..+++.+.||+...+ |+..|--|.
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg~d--gePvV~Hg~tlts~i~f~dv~~~I~~~AF~~S~yPvIlslE~Hc 99 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDGPD--GMPVIYHGHTLTTKIKFSDVLHTIKEHAFVTSEYPIILSIEDHC 99 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecCCC--CCEEEEeCCcCCCceEHHHHHHHHHHhhccCCCCCEEEEEcccC
Confidence 456766677777777777 899999999997621 01211 1222 368999999998875 455555563
No 81
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=52.59 E-value=15 Score=38.26 Aligned_cols=78 Identities=19% Similarity=0.103 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhH
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVV 218 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~ 218 (580)
....+++.++|+++|.+-==|+- -=+|.+|+ |-+.+++++-+++.|-. .+| .|-|||+. ++-.++.
T Consensus 180 ~~~~~~~ieaGad~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~i--lh~cg~~~------~~~~~~~ 248 (335)
T cd00717 180 IEYLKAQIEAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKRIIEEVKKRLPG-VPV--ILFAKGAG------GLLEDLA 248 (335)
T ss_pred HHHHHHHHHhCCCEEEEeCcccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCE--EEEcCCCH------HHHHHHH
Confidence 33445566799999974322442 24577777 99999999999998311 123 56677442 4455555
Q ss_pred hhhhcCCCeeeeCCC
Q 008030 219 EEVDKDQDLVYTDQW 233 (580)
Q Consensus 219 ~~g~~dpDi~ytDr~ 233 (580)
+.+ .|++-.|..
T Consensus 249 ~~~---~~~~s~d~~ 260 (335)
T cd00717 249 QLG---ADVVGLDWR 260 (335)
T ss_pred hcC---CCEEEeCCC
Confidence 542 455555543
No 82
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=50.14 E-value=45 Score=34.60 Aligned_cols=92 Identities=11% Similarity=0.230 Sum_probs=65.9
Q ss_pred CCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEE
Q 008030 115 GNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 115 ~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqv 194 (580)
...+|+.+|.=+..|- .-.+++-++.+|++|||||-+.-- | +.-..++.+.+++.||+...
T Consensus 89 ~~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 89 EIKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELIL 149 (263)
T ss_pred CCCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEE
Confidence 3567888887664332 247888899999999999988642 2 24578999999999999999
Q ss_pred EEeeeccCCCCCCcccccCChhhHhhhhcCCC-eeeeCCCCCcc
Q 008030 195 VMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQD-LVYTDQWGMRN 237 (580)
Q Consensus 195 vmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpD-i~ytDr~G~rn 237 (580)
.++-+ .-+..+..+.+.-.. |++..+.|..-
T Consensus 150 lv~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvTG 181 (263)
T CHL00200 150 LIAPT------------SSKSRIQKIARAAPGCIYLVSTTGVTG 181 (263)
T ss_pred EECCC------------CCHHHHHHHHHhCCCcEEEEcCCCCCC
Confidence 99876 134577776665544 44446766543
No 83
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=50.14 E-value=42 Score=37.02 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---cc-------------------chHHHHHHHHHHcCCcEEE
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY---NW-------------------GGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y---dW-------------------sgY~~l~~mvr~~GLKlqv 194 (580)
.++.|...|..||.+||++|-+---+--........| |+ ...++|++-+++.|+||.+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 3678999999999999999977553221111011222 22 2478999999999999999
Q ss_pred EEeeeccCC
Q 008030 195 VMSFHQCGG 203 (580)
Q Consensus 195 vmSFHqCGG 203 (580)
=+-|--|++
T Consensus 100 D~V~NH~~~ 108 (479)
T PRK09441 100 DVVLNHKAG 108 (479)
T ss_pred EECcccccC
Confidence 888877775
No 84
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=48.34 E-value=72 Score=30.87 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC--Cccc-ccc-------hHHHHHHHHHHcCCcEEEEEee
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQ--PGHY-NWG-------GYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~--P~~Y-dWs-------gY~~l~~mvr~~GLKlqvvmSF 198 (580)
.++.-++.|+.||++|++-|.+- |.-.+... |-++ ++. -...+++.+.+.|+||.+=|-|
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 35678889999999999999776 44433322 3333 111 3678899999999999875543
No 85
>PRK10785 maltodextrin glucosidase; Provisional
Probab=48.02 E-value=52 Score=37.68 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc-------------cchHHHHHHHHHHcCCcEEEEEeeeccC
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN-------------WGGYSDLLEMAKRHGLKVQAVMSFHQCG 202 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd-------------WsgY~~l~~mvr~~GLKlqvvmSFHqCG 202 (580)
+.++|.+.|..||++||++|-+-= |.|..+--.|+ ...+++|++.+++.|+||..=+-|.-||
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~ 252 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTG 252 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 578999999999999999998753 34443333443 2467899999999999999988887776
No 86
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=47.76 E-value=21 Score=38.72 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCcceEEEe----eeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEe
Q 008030 139 KAIDASLRALKSAGVEGVMMD----VWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMS 197 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvD----VWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmS 197 (580)
-.+...+++|+.+|++||++. +-|+..+.+. + .-+++|-+++++.||++..|..
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~v~~ 89 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPMVTT 89 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEEeec
Confidence 356678999999999999863 1133322110 1 1267899999999999876543
No 87
>PLN02433 uroporphyrinogen decarboxylase
Probab=47.59 E-value=28 Score=36.72 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccC
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCG 202 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCG 202 (580)
...++++.++|++.|++.==|+- -=+|.+|+ |-+.++|++-+++.+-.+ -...|.||
T Consensus 182 ~~~~~~~ieaGa~~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG 241 (345)
T PLN02433 182 IEYVDYQIDAGAQVVQIFDSWAG--HLSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANG 241 (345)
T ss_pred HHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCC
Confidence 34455666799999965443553 24577777 999999999999863222 24558898
No 88
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=47.12 E-value=62 Score=36.40 Aligned_cols=66 Identities=15% Similarity=0.314 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-Ccccc-------------cchHHHHHHHHHHcCCcEEEEEeeec
Q 008030 135 VNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQ-PGHYN-------------WGGYSDLLEMAKRHGLKVQAVMSFHQ 200 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~-P~~Yd-------------WsgY~~l~~mvr~~GLKlqvvmSFHq 200 (580)
.-+.+.+.+.|..||++||++|-+-=. .|..+ ...|+ ...+++|++.+++.|+||..=+-|.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 567889999999999999999966432 23221 23333 35678999999999999998888877
Q ss_pred cCC
Q 008030 201 CGG 203 (580)
Q Consensus 201 CGG 203 (580)
++.
T Consensus 101 ~s~ 103 (539)
T TIGR02456 101 TSD 103 (539)
T ss_pred CCC
Confidence 753
No 89
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=47.06 E-value=31 Score=38.12 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=35.5
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 144 SLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 144 ~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
.|+.+|++||+||....-- + .....+.=..-+++-++|.++||+|-||=|+
T Consensus 15 ~l~~irQ~G~~giV~al~~-~---p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~ 65 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I---PNGEVWEKEEIRKRKEYIESAGLHWSVVESV 65 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C---CCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4788899999999976521 1 1112223334567788999999999998765
No 90
>PRK12313 glycogen branching enzyme; Provisional
Probab=46.78 E-value=54 Score=37.66 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=51.8
Q ss_pred ccEEEeeeccee-cCCCcccCHHHHHHHH-HHHHHcCcceEEE-eeeeeeeccCCCcccccch-----------------
Q 008030 118 VPVFVMMPLDSV-TMSNTVNRKKAIDASL-RALKSAGVEGVMM-DVWWGLVERDQPGHYNWGG----------------- 177 (580)
Q Consensus 118 vpvyVMlPLd~V-~~~~~v~~~~al~~~L-~aLK~~GVdGVmv-DVWWGiVE~~~P~~YdWsg----------------- 177 (580)
.-+|-+-+=+-- ...+..-+.+++...| ..||++||+.|.+ +|+ | .|...+|.|
T Consensus 148 ~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d 221 (633)
T PRK12313 148 ISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPED 221 (633)
T ss_pred ceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHH
Confidence 335555544311 1223344567788785 9999999999984 442 2 244445544
Q ss_pred HHHHHHHHHHcCCcEEEEEeeeccC
Q 008030 178 YSDLLEMAKRHGLKVQAVMSFHQCG 202 (580)
Q Consensus 178 Y~~l~~mvr~~GLKlqvvmSFHqCG 202 (580)
.++|++.+++.||||..=+-|--|+
T Consensus 222 ~k~lv~~~H~~Gi~VilD~V~nH~~ 246 (633)
T PRK12313 222 FMYLVDALHQNGIGVILDWVPGHFP 246 (633)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCC
Confidence 8999999999999987766674444
No 91
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.78 E-value=65 Score=33.12 Aligned_cols=65 Identities=25% Similarity=0.409 Sum_probs=47.6
Q ss_pred CCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEE
Q 008030 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 116 ~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvv 195 (580)
..+|+..|+=.+.| - .-.+++-++.+|++||+||-+.- + | ...-.++.+.+|+.||+...+
T Consensus 86 ~~~plv~m~Y~Npi------~-~~G~e~f~~~~~~aGvdgviipD-----l---p----~ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 86 PNIPIGLLTYYNLI------F-RKGVEEFYAKCKEVGVDGVLVAD-----L---P----LEESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred CCCCEEEEEeccHH------h-hhhHHHHHHHHHHcCCCEEEECC-----C---C----hHHHHHHHHHHHHCCCcEEEE
Confidence 45676666654322 1 34778889999999999998873 1 2 134578999999999999888
Q ss_pred Eeee
Q 008030 196 MSFH 199 (580)
Q Consensus 196 mSFH 199 (580)
++-+
T Consensus 147 v~P~ 150 (256)
T TIGR00262 147 VAPN 150 (256)
T ss_pred ECCC
Confidence 8765
No 92
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=46.42 E-value=21 Score=37.24 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHHHHHHcCcceEEE-eeeeeeeccCCCcccc---cchHHHHHHHHHHc-CCcEEEEEeeeccCCCCCCcccccCChhh
Q 008030 143 ASLRALKSAGVEGVMM-DVWWGLVERDQPGHYN---WGGYSDLLEMAKRH-GLKVQAVMSFHQCGGNVGDSVSIPLPKWV 217 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~-GLKlqvvmSFHqCGGNVGD~~~IPLP~WV 217 (580)
..++++.++|+++|.+ |- |+ .-=+|.+|+ |-+.+++++-+++. |- .+| .|-|||.. ++-.++
T Consensus 184 ~~~~~~~eaGad~i~i~d~-~~--~~lsp~~f~ef~~p~~k~i~~~i~~~~~~--~~i--lh~cg~~~------~~~~~~ 250 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDS-WA--GALSPEDFEEFVLPYLKKIIEEVKARLPN--VPV--ILFAKGAG------HLLEEL 250 (338)
T ss_pred HHHHHHHHcCCCEEEEECC-cc--ccCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCE--EEEeCCcH------HHHHHH
Confidence 3445566799999974 44 44 234677777 99999999999986 21 233 45576431 344444
Q ss_pred HhhhhcCCCeeeeCC
Q 008030 218 VEEVDKDQDLVYTDQ 232 (580)
Q Consensus 218 ~~~g~~dpDi~ytDr 232 (580)
.+. ..|++-.|.
T Consensus 251 ~~~---~~~~~s~d~ 262 (338)
T TIGR01464 251 AET---GADVVGLDW 262 (338)
T ss_pred Hhc---CCCEEEeCC
Confidence 443 346665554
No 93
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=45.74 E-value=57 Score=35.85 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeee-ee----------eccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWW-GL----------VERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNV 205 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWW-Gi----------VE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNV 205 (580)
+.+.+.+.++++|.+|++-+.+|-=| +. -+. .+.+|= +|-+.|++-|++.|||.=.-+..=.+ |.
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v--~~ 131 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMV--SP 131 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EEEEEEETTEE--ES
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeEEEEeccccc--cc
Confidence 57889999999999999999998644 33 221 123332 48999999999999998766654333 23
Q ss_pred CCcccccCChhhHhh
Q 008030 206 GDSVSIPLPKWVVEE 220 (580)
Q Consensus 206 GD~~~IPLP~WV~~~ 220 (580)
+-...---|.|+...
T Consensus 132 ~S~l~~~hPdw~l~~ 146 (394)
T PF02065_consen 132 DSDLYREHPDWVLRD 146 (394)
T ss_dssp SSCHCCSSBGGBTCC
T ss_pred hhHHHHhCccceeec
Confidence 334444578998764
No 94
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.53 E-value=73 Score=32.14 Aligned_cols=67 Identities=25% Similarity=0.390 Sum_probs=44.1
Q ss_pred CCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEE
Q 008030 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 116 ~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvv 195 (580)
..+|+.+|.=+..+ + ...+.-++.++++|++||.+... .+|. ...-.++.+.+++.||+..+.
T Consensus 73 ~~~Pl~lM~y~n~~-----~---~~~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~ 135 (244)
T PRK13125 73 VSVPIILMTYLEDY-----V---DSLDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFF 135 (244)
T ss_pred CCCCEEEEEecchh-----h---hCHHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEE
Confidence 45677667544221 1 24455688899999999999421 0121 124568999999999988777
Q ss_pred Eeee
Q 008030 196 MSFH 199 (580)
Q Consensus 196 mSFH 199 (580)
++-+
T Consensus 136 v~p~ 139 (244)
T PRK13125 136 TSPK 139 (244)
T ss_pred ECCC
Confidence 6654
No 95
>PRK03906 mannonate dehydratase; Provisional
Probab=44.89 E-value=32 Score=37.77 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 144 SLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 144 ~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
.|+.+|++||+||.... -.-.....+.-..-+++-++|.++||+|-||=|+
T Consensus 15 ~l~~~rQ~G~~~iv~~l----~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~ 65 (385)
T PRK03906 15 TLEDIRQPGATGIVTAL----HDIPVGEVWPVEEILARKAEIEAAGLEWSVVESV 65 (385)
T ss_pred hHHHHhcCCCCceeecC----CCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 57789999999999763 2111122333344677889999999999998665
No 96
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=44.84 E-value=62 Score=33.08 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=46.9
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccC-CC--cccccchHHHHHHHHHHcCCcEEEEEeeeccC
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERD-QP--GHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCG 202 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~-~P--~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCG 202 (580)
.+++++.+++.++.++..|++.|-+=.=++..-.. .+ ..++-...+++++.+++.|++++ .|.++
T Consensus 115 ~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~----~H~~~ 182 (342)
T cd01299 115 VVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVA----AHAYG 182 (342)
T ss_pred eecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEE----EEeCC
Confidence 35668899999999999999999876543322111 11 25667788999999999998754 67553
No 97
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=44.67 E-value=2.2e+02 Score=30.03 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=57.8
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCcccccc-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008030 135 VNRKKAIDASLRALKSAG--VEGVMMDVWWGLVERDQPGHYNWG-----GYSDLLEMAKRHGLKVQAVMSFHQCGGNVGD 207 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~G--VdGVmvDVWWGiVE~~~P~~YdWs-----gY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD 207 (580)
.++.+.+.+-.+.+++.| +|+|.+|+=|.- +-+.|+|. .-+++++-.++.|+|+.+++.=|-+-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~----- 90 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV----- 90 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC-----
Confidence 356788888888888865 689999966641 23345554 35799999999999997776544321
Q ss_pred cccccCChhhHhhhhcCCCeeeeCCCCC
Q 008030 208 SVSIPLPKWVVEEVDKDQDLVYTDQWGM 235 (580)
Q Consensus 208 ~~~IPLP~WV~~~g~~dpDi~ytDr~G~ 235 (580)
+. +.-+-+++.+ .+.|.++.+|.
T Consensus 91 ~~----~~~~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 91 DP----GYDVYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred CC----CChHHHHHHH-CCeEEECCCCC
Confidence 00 1123344444 48889998874
No 98
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.55 E-value=69 Score=33.35 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=44.1
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---ccchHHHHHHHHHHcCCcEEE
Q 008030 133 NTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY---NWGGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 133 ~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlqv 194 (580)
|.+.+.+++..--++||++|+..|.+-.|= =+.+|..| ...+++.|.+.+++.||.+..
T Consensus 35 Csie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t 96 (266)
T PRK13398 35 CAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT 96 (266)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE
Confidence 567789999999999999999977776653 12222222 256899999999999997654
No 99
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=44.44 E-value=60 Score=36.88 Aligned_cols=66 Identities=17% Similarity=0.382 Sum_probs=47.4
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEE-eeeeeeeccCCCcccc-------------cchHHHHHHHHHHcCCcEEEEEeee
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMM-DVWWGLVERDQPGHYN-------------WGGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmv-DVWWGiVE~~~P~~Yd-------------WsgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
..-+.+++.+.|..||.+||++|-+ +|+-. +.....|+ ...+++|.+.+++.|+||..=+-|-
T Consensus 28 ~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~N 104 (551)
T PRK10933 28 GTGDLRGVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFN 104 (551)
T ss_pred CCcCHHHHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3557889999999999999999965 44311 00011222 2458899999999999998877776
Q ss_pred ccC
Q 008030 200 QCG 202 (580)
Q Consensus 200 qCG 202 (580)
-|+
T Consensus 105 H~s 107 (551)
T PRK10933 105 HTS 107 (551)
T ss_pred Ccc
Confidence 665
No 100
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=44.18 E-value=1e+02 Score=30.65 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccC-CCCCCcccccCChhh
Q 008030 139 KAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCG-GNVGDSVSIPLPKWV 217 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCG-GNVGD~~~IPLP~WV 217 (580)
+.+...|+.+.++|+++|.+ |.+-.....+..++=...++|-+++++.||++ |.|.+- .|..+. =|. +
T Consensus 10 ~~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l----s~h~p~~~nl~s~----d~~-~ 78 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV----SVHAPYLINLASP----DKE-K 78 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE----EEECCceecCCCC----CHH-H
Confidence 35778999999999999998 33322221122222234888999999999984 456421 122210 010 0
Q ss_pred HhhhhcCCCeeeeCCCCCccccc----cccccCccccccCCCchhHHHHHHHHHHHHHhhhh
Q 008030 218 VEEVDKDQDLVYTDQWGMRNYEY----ISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLL 275 (580)
Q Consensus 218 ~~~g~~dpDi~ytDr~G~rn~Ey----LSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l 275 (580)
++. +=.+-+++ --||++.+-+..|+.+.+..++.++.+.+.+....
T Consensus 79 r~~------------~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~ 128 (273)
T smart00518 79 VEK------------SIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVI 128 (273)
T ss_pred HHH------------HHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHH
Confidence 000 00000111 12456655555566554556677777777777664
No 101
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=43.91 E-value=20 Score=37.44 Aligned_cols=52 Identities=29% Similarity=0.419 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeee-ecc--------CCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 142 DASLRALKSAGVEGVMMDVWWGL-VER--------DQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGi-VE~--------~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
+..|+.||++|++-|- |. +|. -.|++..|..|.+.++.++++|+++..-|-|
T Consensus 143 ~e~l~~Lk~aG~~~~~-----~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ii 203 (340)
T TIGR03699 143 REVLERLKEAGLDSIP-----GGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMF 203 (340)
T ss_pred HHHHHHHHHcCCCcCC-----CCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEe
Confidence 6899999999998663 32 232 1366779999999999999999997554433
No 102
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=43.87 E-value=3.7e+02 Score=27.37 Aligned_cols=177 Identities=16% Similarity=0.213 Sum_probs=97.9
Q ss_pred ccCHHHHHHHHHHHHHc--CcceEEEeeeeeeeccCCCcccc-----cchHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008030 135 VNRKKAIDASLRALKSA--GVEGVMMDVWWGLVERDQPGHYN-----WGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGD 207 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~--GVdGVmvDVWWGiVE~~~P~~Yd-----WsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD 207 (580)
-.+.+.+..-.+.+++. -+|.|.+|.+|..-- +.--++ |.--+++++-+++.|+|+.+++.-+
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~-------- 89 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPY-------- 89 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChh--------
Confidence 35677888888888874 678999999998432 222113 4456889999999999888877554
Q ss_pred cccccCChhhHhhhhc-----CCCeeeeCCCCCccccccccccCcccc--ccCCCch---hHHHHH-HHHHHHHHhhhh-
Q 008030 208 SVSIPLPKWVVEEVDK-----DQDLVYTDQWGMRNYEYISLGCDTIPV--LKGRTPV---QCYSDF-MRAFKDKFKDLL- 275 (580)
Q Consensus 208 ~~~IPLP~WV~~~g~~-----dpDi~ytDr~G~rn~EyLSlg~D~~pv--l~GRTpi---q~Y~DF-M~SFr~~F~~~l- 275 (580)
+-.|..+..++ .-|-+-+|- .|..++-.+...- .++.+.. ..|.-. .++..+.+...-
T Consensus 90 -----v~~w~~~~~~~~~~~~Gvdg~w~D~-----~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~ 159 (265)
T cd06589 90 -----IREWWAEVVKKLLVSLGVDGFWTDM-----GEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSK 159 (265)
T ss_pred -----HHHHHHHHHHHhhccCCCCEEeccC-----CCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcC
Confidence 27788876543 233444552 2322221111100 0011111 223332 344445544432
Q ss_pred cCceeEEEEccccCcccCCCCCCCCC--CCCcCCCccceeeccHHHHHHHHHHHHH--hCCCCcCCCCCCCCCCCCC
Q 008030 276 GDTIVEIQVGMGPAGELRYPSYPEQN--GTWKFPGIGAFQCYDKYMLSSLKAAAES--AGKPEWGSTGPTDAGHYNN 348 (580)
Q Consensus 276 ~~~I~eI~VGlGP~GELRYPSYp~~~--g~W~fPGiGEFQCYDkymla~Lk~aA~~--~G~~~WG~~GP~dAg~Yn~ 348 (580)
+....-+.-+.. +|-=||+..=..| ..|. .|+.+++..... .|-|.||. |.|.|..
T Consensus 160 ~~r~~~~sRs~~-~Gsqry~~~W~GD~~stW~------------~l~~~i~~~l~~~l~G~~~~g~----DigGf~~ 219 (265)
T cd06589 160 NKRPFILSRSGY-AGSQRYAGMWSGDNTSTWG------------YLRSQIPAGLTMSMSGIPFVGS----DIGGFTG 219 (265)
T ss_pred CCCeEEEEcCCc-ccccCcCceeCCcccCCHH------------HHHHHHHHHHhhhccCCcccCC----CcCCCCC
Confidence 122222333333 4777887665544 1232 367777776654 58999983 5555544
No 103
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=43.83 E-value=20 Score=37.97 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHc-CcceEEEeeeeeee--ccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccC
Q 008030 144 SLRALKSA-GVEGVMMDVWWGLV--ERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCG 202 (580)
Q Consensus 144 ~L~aLK~~-GVdGVmvDVWWGiV--E~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCG 202 (580)
.+++...+ |+|+|.+-=.|+-. .-=+|..|. |-+|++|++-+++.| .....+|.||
T Consensus 160 y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~---g~piilH~cG 221 (321)
T cd03309 160 LYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT---SALIVHHSCG 221 (321)
T ss_pred HHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc---CCceEEEeCC
Confidence 33444444 99999984455532 112355555 999999999999984 1235569998
No 104
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=43.15 E-value=26 Score=36.87 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCcceEE-EeeeeeeeccCCCcccc---cchHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 008030 141 IDASLRALKSAGVEGVM-MDVWWGLVERDQPGHYN---WGGYSDLLEMAKRHGLKVQAVMSFHQCGGN 204 (580)
Q Consensus 141 l~~~L~aLK~~GVdGVm-vDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlqvvmSFHqCGGN 204 (580)
+...++++.++|+++|. .|- |+- -=+|.+|+ +-+.++|++-+++.|=. .+|+ |-|||.
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~-~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~il--h~cg~~ 249 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDS-WAG--ALSPADYREFVLPYMKRIVAELKREHPD-VPVI--LFGKGA 249 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecC-ccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCEE--EEcCCc
Confidence 34455667779999997 444 442 24577777 99999999999997411 2344 778744
No 105
>PLN02692 alpha-galactosidase
Probab=42.70 E-value=45 Score=37.13 Aligned_cols=59 Identities=27% Similarity=0.384 Sum_probs=41.4
Q ss_pred CHHHHHHHHHH-----HHHcCcceEEEee-eeeeeccCCCccccc------chHHHHHHHHHHcCCcEEEEE
Q 008030 137 RKKAIDASLRA-----LKSAGVEGVMMDV-WWGLVERDQPGHYNW------GGYSDLLEMAKRHGLKVQAVM 196 (580)
Q Consensus 137 ~~~al~~~L~a-----LK~~GVdGVmvDV-WWGiVE~~~P~~YdW------sgY~~l~~mvr~~GLKlqvvm 196 (580)
+.+.+.....+ ||.+|.+-|.+|- |++. ++..-+..-. +|-+.|++.|++.|||+=...
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~-~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~ 141 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEI-ARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYS 141 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCC-CCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEe
Confidence 45666666554 4888999999987 5543 3332232222 789999999999999986544
No 106
>PLN00196 alpha-amylase; Provisional
Probab=42.66 E-value=79 Score=35.03 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc--------------chHHHHHHHHHHcCCcEEEEEeeeccC
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW--------------GGYSDLLEMAKRHGLKVQAVMSFHQCG 202 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdW--------------sgY~~l~~mvr~~GLKlqvvmSFHqCG 202 (580)
..+.|...|..||++||+.|-+.- +.++.++..|+- ..+++|.+-+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P---~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPP---PSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 467899999999999999998764 234444444432 258999999999999998777676565
Q ss_pred C
Q 008030 203 G 203 (580)
Q Consensus 203 G 203 (580)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 4
No 107
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=42.39 E-value=34 Score=34.45 Aligned_cols=73 Identities=25% Similarity=0.429 Sum_probs=47.7
Q ss_pred CCCccEEEeeec---ceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCc
Q 008030 115 GNGVPVFVMMPL---DSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLK 191 (580)
Q Consensus 115 ~~~vpvyVMlPL---d~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLK 191 (580)
...+||+||+=- |-+-+ -...+.|..+++.+|++|+|||.+ |..- .+++.|...=++|.+.++ |++
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys---~~E~~~M~~dI~~~~~~GadG~Vf----G~L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYS---DEEIEIMKEDIRMLRELGADGFVF----GALT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S------HHHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCC---HHHHHHHHHHHHHHHHcCCCeeEE----EeEC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 568999999854 11111 124568999999999999999987 4444 378899999999999987 666
Q ss_pred EEEEEee
Q 008030 192 VQAVMSF 198 (580)
Q Consensus 192 lqvvmSF 198 (580)
+.-=+.|
T Consensus 117 ~tFHRAf 123 (201)
T PF03932_consen 117 VTFHRAF 123 (201)
T ss_dssp EEE-GGG
T ss_pred EEEeCcH
Confidence 5433333
No 108
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=42.24 E-value=99 Score=33.35 Aligned_cols=86 Identities=10% Similarity=0.158 Sum_probs=55.4
Q ss_pred ccCHHHHHHHHHHHHHc--CcceEEEeeeeeeeccCCCcccccc-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008030 135 VNRKKAIDASLRALKSA--GVEGVMMDVWWGLVERDQPGHYNWG-----GYSDLLEMAKRHGLKVQAVMSFHQCGGNVGD 207 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~--GVdGVmvDVWWGiVE~~~P~~YdWs-----gY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD 207 (580)
..+.+.+.+-++.+++. -+|++.+|.||+.-. +.|.|. .-+++++.+++.|+|+.+.+.=+-
T Consensus 39 ~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v------- 107 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFV------- 107 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEE-------
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeeccc-------
Confidence 35678888889999886 579999999998732 245554 579999999999999765554442
Q ss_pred cccccCChh---hHhhhhcCCCeeeeCCCCCc
Q 008030 208 SVSIPLPKW---VVEEVDKDQDLVYTDQWGMR 236 (580)
Q Consensus 208 ~~~IPLP~W---V~~~g~~dpDi~ytDr~G~r 236 (580)
....- ..+++.. .+++.++.+|..
T Consensus 108 ----~~~~~~~~~~~~~~~-~~~~v~~~~g~~ 134 (441)
T PF01055_consen 108 ----SNDSPDYENYDEAKE-KGYLVKNPDGSP 134 (441)
T ss_dssp ----ETTTTB-HHHHHHHH-TT-BEBCTTSSB
T ss_pred ----CCCCCcchhhhhHhh-cCceeecccCCc
Confidence 22222 2333333 488999999843
No 109
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=42.13 E-value=87 Score=29.57 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCccEEEeeecceecCC-Cccc---CHHHH-HHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHc
Q 008030 116 NGVPVFVMMPLDSVTMS-NTVN---RKKAI-DASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRH 188 (580)
Q Consensus 116 ~~vpvyVMlPLd~V~~~-~~v~---~~~al-~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~ 188 (580)
++++|.+++--..-... ..+. .++.| ++-++.++..|.|||.+|..|.-.+.. -++..|.++++.+|+.
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSA 136 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHH
Confidence 56666666643221111 0122 23344 444556688999999999755433221 2477788888877775
No 110
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=41.60 E-value=3.4e+02 Score=28.50 Aligned_cols=87 Identities=8% Similarity=0.177 Sum_probs=58.9
Q ss_pred cCHHHHHHHHHHHHHc--CcceEEEee-eeeeeccCCCcccccc-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008030 136 NRKKAIDASLRALKSA--GVEGVMMDV-WWGLVERDQPGHYNWG-----GYSDLLEMAKRHGLKVQAVMSFHQCGGNVGD 207 (580)
Q Consensus 136 ~~~~al~~~L~aLK~~--GVdGVmvDV-WWGiVE~~~P~~YdWs-----gY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD 207 (580)
.+.+.++.-++.+++. -+|.|.+|. ||+ ..+-+.|+|. .-+++++-+++.|+|+.+++.=+-+-
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~----- 92 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGP----- 92 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCC-----
Confidence 5678888888999876 789999996 664 1121256665 56788999999999988866433211
Q ss_pred cccccCChhhHhhhhcCCCeeeeCCCCCcc
Q 008030 208 SVSIPLPKWVVEEVDKDQDLVYTDQWGMRN 237 (580)
Q Consensus 208 ~~~IPLP~WV~~~g~~dpDi~ytDr~G~rn 237 (580)
+ -+. .+++.+ .+++.++..|...
T Consensus 93 ~----~~~--y~e~~~-~g~~v~~~~g~~~ 115 (319)
T cd06591 93 E----TEN--YKEMDE-KGYLIKTDRGPRV 115 (319)
T ss_pred C----Chh--HHHHHH-CCEEEEcCCCCee
Confidence 1 122 344444 4889999887743
No 111
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=41.43 E-value=20 Score=35.76 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=17.5
Q ss_pred cccchHHHHHHHHHHcCCcEEEE
Q 008030 173 YNWGGYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 173 YdWsgY~~l~~mvr~~GLKlqvv 195 (580)
|+|+.|+.|++.+|+.|+++.+.
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA~ 108 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIAL 108 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEEE
T ss_pred CchHHHHHHHHHHHHCCCCEEEe
Confidence 57999999999999999988763
No 112
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=40.12 E-value=23 Score=37.31 Aligned_cols=57 Identities=16% Similarity=0.333 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCcceEEE---eeee-eeeccCCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 142 DASLRALKSAGVEGVMM---DVWW-GLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmv---DVWW-GiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
+..|++||++|++.|.. +..- .+-.+-.|++..+..+.+.+++++++|+++-..|=|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 67899999999998751 1110 111122455667778899999999999998766655
No 113
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=39.99 E-value=88 Score=35.40 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=48.9
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccC-CCccc-------------ccchHHHHHHHHHHcCCcEEEEEeee
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERD-QPGHY-------------NWGGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~-~P~~Y-------------dWsgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
.+-+.+++...|..||++||++|-+---. +.. ....| .....++|.+.+++.|+||..=+-|.
T Consensus 22 ~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~---~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~N 98 (543)
T TIGR02403 22 GTGDLRGIIEKLDYLKKLGVDYIWLNPFY---VSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFN 98 (543)
T ss_pred CccCHHHHHHhHHHHHHcCCCEEEECCcc---cCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 34577899999999999999999664322 221 11233 23568899999999999999988887
Q ss_pred ccC
Q 008030 200 QCG 202 (580)
Q Consensus 200 qCG 202 (580)
-|+
T Consensus 99 H~~ 101 (543)
T TIGR02403 99 HTS 101 (543)
T ss_pred ccc
Confidence 776
No 114
>PRK07094 biotin synthase; Provisional
Probab=39.16 E-value=55 Score=33.81 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCC-------cccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQP-------GHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P-------~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
+..|+.||.+|++.|.+.+ |...| ....|..+.+.++.++++|+++..-+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl-----Es~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii 187 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH-----ETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMV 187 (323)
T ss_pred HHHHHHHHHcCCCEEEecc-----ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEE
Confidence 4578899999999998754 43221 2578899999999999999976544433
No 115
>PRK08508 biotin synthase; Provisional
Probab=39.02 E-value=35 Score=35.13 Aligned_cols=51 Identities=25% Similarity=0.265 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCC----c---ccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQP----G---HYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P----~---~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
+.+|++||++|++.+-++ +|. ++ + ..+|....+.++.++++|+++-.-|=+
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 668999999999999885 443 22 1 256778888888999999877554444
No 116
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=38.91 E-value=69 Score=38.02 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCcceEEEee-eeeeeccCCCcccccchHHHHH----HHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 008030 139 KAIDASLRALKSAGVEGVMMDV-WWGLVERDQPGHYNWGGYSDLL----EMAKRHGLKVQAVMSFHQCGGNVGDSVSIPL 213 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~l~----~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPL 213 (580)
.+++..+++|..+|+.-|-+|- -| .|.-....-+|..|.+.+ ..+-+ |++-...+++|-|=||..+- +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~i----~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFNDI----I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHHH----H
Confidence 4778889999999999999983 22 344334456787776554 33333 56544567999999997651 2
Q ss_pred ChhhHhhhhcCCCeeeeC
Q 008030 214 PKWVVEEVDKDQDLVYTD 231 (580)
Q Consensus 214 P~WV~~~g~~dpDi~ytD 231 (580)
|. +.+-|-|.++-+
T Consensus 654 ~~----i~~l~vD~~~lE 667 (758)
T PRK05222 654 DA----IAALDADVISIE 667 (758)
T ss_pred HH----HHhCCCCEEEEE
Confidence 22 234577877766
No 117
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=38.68 E-value=20 Score=35.63 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEE
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvv 195 (580)
..+.+...++|+|+|.+=++||...+. ...+...-=.++.+.+++.|||+..-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~-~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG-NEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT-HHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc-cHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 568888999999999999999998753 44555555566667777778887655
No 118
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=37.39 E-value=35 Score=35.42 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeecc--------CCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 141 IDASLRALKSAGVEGVMMDVWWGLVER--------DQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 141 l~~~L~aLK~~GVdGVmvDVWWGiVE~--------~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
.+..|++||++|++.+- -+-.|. -.|++..|..|.+.++.+++.|+++-.-|=+
T Consensus 106 ~~e~l~~LkeAGl~~i~----~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ii 167 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMP----GTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMF 167 (309)
T ss_pred HHHHHHHHHHcCCCcCC----CCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 46789999999998763 111332 2377889999999999999999988655544
No 119
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=37.21 E-value=91 Score=37.25 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCcceEEEee-eeeeeccCCCcccccchHHHHH----HHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 008030 139 KAIDASLRALKSAGVEGVMMDV-WWGLVERDQPGHYNWGGYSDLL----EMAKRHGLKVQAVMSFHQCGGNVGDSVSIPL 213 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~l~----~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPL 213 (580)
.+++..+++|..+|+.-|-+|- -| .|.-.-+.-+|..|.+.+ .+ -..|++-..-+++|-|-||..+ | +
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal--~e~~~~~~~~~~~~l~~av~af~~-~~~~v~~~~~I~~H~C~gnf~~---I-~ 658 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAAL--REGLPLRKSEHAFYLDWAVHSFRI-TNCGVQDTTQIHTHMCYSNFND---I-I 658 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcch--hhcCCcCccCHHHHHHHHHHHHHH-HHhcCCCCCEEEEEEecCCcHH---H-H
Confidence 4778888999999999999983 33 233223347787777665 33 3445644555788999999754 1 2
Q ss_pred ChhhHhhhhcCCCeeeeCCC
Q 008030 214 PKWVVEEVDKDQDLVYTDQW 233 (580)
Q Consensus 214 P~WV~~~g~~dpDi~ytDr~ 233 (580)
| .+.+-|-|.++-|-+
T Consensus 659 ~----~i~~l~~D~~~~E~~ 674 (766)
T PLN02475 659 H----SIIDMDADVITIENS 674 (766)
T ss_pred H----HHHhCCCCEEEEEcC
Confidence 2 234567787776533
No 120
>PRK00957 methionine synthase; Provisional
Probab=36.73 E-value=1.3e+02 Score=31.11 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCcceEEEee-eeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhh
Q 008030 139 KAIDASLRALKSAGVEGVMMDV-WWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWV 217 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV 217 (580)
+++...+++|+.+|++.|.+|= -|.. +-.++.-..+.++.+.+ ++++. ...|-|| |.. |-|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~~--v~lH~CG-~~~-------~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNVP--VAMHVCG-DVS-------NII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCCc--eEEEECC-CcH-------HHH-
Confidence 4677888999999999888871 2221 22234444444444433 33443 4579995 321 112
Q ss_pred HhhhhcCCCeeeeCCCCC
Q 008030 218 VEEVDKDQDLVYTDQWGM 235 (580)
Q Consensus 218 ~~~g~~dpDi~ytDr~G~ 235 (580)
-...+.+-|.++-|-.|.
T Consensus 206 ~~l~~~~vd~i~ld~~~~ 223 (305)
T PRK00957 206 DDLLKFNVDILDHEFASN 223 (305)
T ss_pred HHHHhCCCCEEEEeecCC
Confidence 223356778888887665
No 121
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=36.68 E-value=75 Score=33.38 Aligned_cols=65 Identities=18% Similarity=0.394 Sum_probs=43.6
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-ccc-----hHHHHHHHHHHcCCc-----EEEEEeee
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY-NWG-----GYSDLLEMAKRHGLK-----VQAVMSFH 199 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y-dWs-----gY~~l~~mvr~~GLK-----lqvvmSFH 199 (580)
+++|.....++.-.++|+ .|+..|++|||=|- ...|-.| ++. ..+++++.||+.+.+ |+..|.-|
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~--~gepvV~Hg~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~H 98 (260)
T cd08597 23 EDQLRGPSSVEGYVRALQ-RGCRCVELDCWDGP--NGEPVIYHGHTLTSKISFRSVIEAINEYAFVASEYPLILCIENH 98 (260)
T ss_pred CCeecCccCHHHHHHHHH-hCCCEEEEEeEcCC--CCCEEEEeCCccccceEHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 456666667776667775 99999999999762 1113222 233 578999999998776 44455555
No 122
>PRK07360 FO synthase subunit 2; Reviewed
Probab=36.48 E-value=49 Score=35.51 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeec---------cCCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 141 IDASLRALKSAGVEGVMMDVWWGLVE---------RDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 141 l~~~L~aLK~~GVdGVmvDVWWGiVE---------~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
.+.+|++||++|++.+- |... .-.|++-++..|.+..++++++||++-.-|=|
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 36789999999999993 2211 11477888889999999999999999766655
No 123
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.32 E-value=73 Score=33.08 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=48.2
Q ss_pred CCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEE
Q 008030 115 GNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 115 ~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqv 194 (580)
..+|+||-+-.|=-+ .-....+...|+..|++|++.|++- .|--...=.-..++.+++++.|||+.+
T Consensus 52 ~~~V~v~~GGtl~E~-----~~~q~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 52 DYGIKVYPGGTLFEI-----AHSKGKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred HcCCeEeCCccHHHH-----HHHhhhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 446777766422111 1123689999999999999999983 333344455678899999999999976
Q ss_pred EE
Q 008030 195 VM 196 (580)
Q Consensus 195 vm 196 (580)
=+
T Consensus 119 Ev 120 (237)
T TIGR03849 119 EV 120 (237)
T ss_pred cc
Confidence 43
No 124
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=35.18 E-value=51 Score=32.45 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEE
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqv 194 (580)
+...+..+++.+..+|+++|.+.+.+|-. +..+...-.+++.+.+++.|+++.+
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~----~~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE----EEREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc----hHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 34566678899999999999999988843 2355666778888888999999755
No 125
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=35.05 E-value=89 Score=32.53 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcc------cccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccc
Q 008030 138 KKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGH------YNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSI 211 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~------YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~I 211 (580)
.+++++++++|..+|+.-|-+|== .+.+.-.... .+|.-+. +.+..+.=..-+.+..|-|+||..+..
T Consensus 153 a~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~v~~H~C~~~~~~~~-- 226 (324)
T PF01717_consen 153 AEAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAA---EALNRAVKGEDATVGVHVCRGNYPSIL-- 226 (324)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHH---HHHHHTTSTTTSEEEEEESSSCHCTTH--
T ss_pred HHHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHH---HHHHhccCCCCCEEEEEecCccchhhH--
Confidence 357888999999999999999844 2222111111 1233222 233333112344569999999854321
Q ss_pred cCChhhHhhhhcCCCeeeeCCCCCc
Q 008030 212 PLPKWVVEEVDKDQDLVYTDQWGMR 236 (580)
Q Consensus 212 PLP~WV~~~g~~dpDi~ytDr~G~r 236 (580)
-...+.+-|.++-+=+..+
T Consensus 227 ------~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 ------PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp ------HHHHCSS-SEEEEEETSST
T ss_pred ------HHHhhcccceEEeecccCC
Confidence 2344567787776655554
No 126
>PRK15108 biotin synthase; Provisional
Probab=34.75 E-value=54 Score=35.04 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------ccchHHHHHHHHHHcCCcE
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHY-------NWGGYSDLLEMAKRHGLKV 192 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y-------dWsgY~~l~~mvr~~GLKl 192 (580)
+..|++||++|||+|-+++ |. .|+.| +|....+..+.++++|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
No 127
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=34.65 E-value=38 Score=36.74 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=35.5
Q ss_pred hccCccccCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeecc
Q 008030 107 KQGGLQEKGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVER 167 (580)
Q Consensus 107 ~~~~~~~~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~ 167 (580)
|++.........||||-.=+-.-+.....-..+.|...|...+.+|++|| |.||-.+-
T Consensus 250 Rva~~~~~~~~~pV~~Y~r~~~~~~~~~fLs~~DL~~TigesaalGa~Gv---ViWG~s~~ 307 (337)
T PF01630_consen 250 RVAKLPKPPYPLPVFPYTRYVYYDSTDEFLSQEDLVNTIGESAALGAAGV---VIWGSSND 307 (337)
T ss_dssp HHHHHTSSTT--EEEEEEESEETTEEEEE--HHHHHHHHHHHHHTT-SEE---EEE--GGG
T ss_pred HHHhhcCCCCCcceeeeeecccccCccccchhhHHHHHHHHHHHcCCCeE---EEeecccc
Confidence 55555544456899888764322223345567899999999999999999 56887653
No 128
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=34.51 E-value=1.2e+02 Score=33.04 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=49.6
Q ss_pred CccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEE
Q 008030 117 GVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 117 ~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqv 194 (580)
+-|+++-.| |.+.+.+.+...-+.||.+||.-+---.|==-.-+.+-+-..+.+|+.|.+.+++.||.+..
T Consensus 117 ~~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t 187 (360)
T PRK12595 117 GNQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVIS 187 (360)
T ss_pred CCeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 445666666 56778899999999999999987774333211111123445678899999999999998754
No 129
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=33.72 E-value=36 Score=35.12 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=23.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeee
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWG 163 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWG 163 (580)
+++|.....+++-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg 53 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecC
Confidence 456666666776666666 8999999999976
No 130
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=33.51 E-value=70 Score=32.44 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcccccccCc
Q 008030 434 YLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALP 493 (580)
Q Consensus 434 Y~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~ 493 (580)
...+++.|-+.|+...++|+.-.--...---..--++++..+...+++.||..+|||.--
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GEf 182 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYGVDPCGEGGEF 182 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TTTTE
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCCeeE
Confidence 667888888899999999987543211101112236899999999999999999999754
No 131
>PRK04326 methionine synthase; Provisional
Probab=33.48 E-value=71 Score=33.23 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCcceEEEee-eeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhh
Q 008030 139 KAIDASLRALKSAGVEGVMMDV-WWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWV 217 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV 217 (580)
++++..+++|+.+|++.|.+|= =|.. .|. ++.-+.+.++.+-+ +++..+ ..|-|.||..+ - +
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~v--~lH~C~G~~~~-------~-~ 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAKL--GLHVCYGDYSR-------I-A 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCEE--EEEEeCCCcHH-------H-H
Confidence 5777888999999999998873 1221 232 23444444444433 445443 56999887521 1 1
Q ss_pred HhhhhcCCCeeeeCCC
Q 008030 218 VEEVDKDQDLVYTDQW 233 (580)
Q Consensus 218 ~~~g~~dpDi~ytDr~ 233 (580)
....+.+-|.+.-|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1223455666666654
No 132
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=33.44 E-value=34 Score=41.19 Aligned_cols=72 Identities=31% Similarity=0.658 Sum_probs=54.0
Q ss_pred ceecCCCcccCHHHHHHHHHHHH-----HcC---cceEEEeeeeeeeccCCCccc---ccchHH---HHHHHHHHcCCcE
Q 008030 127 DSVTMSNTVNRKKAIDASLRALK-----SAG---VEGVMMDVWWGLVERDQPGHY---NWGGYS---DLLEMAKRHGLKV 192 (580)
Q Consensus 127 d~V~~~~~v~~~~al~~~L~aLK-----~~G---VdGVmvDVWWGiVE~~~P~~Y---dWsgY~---~l~~mvr~~GLKl 192 (580)
+||.+ |+|...+-.+|-.|- .+| +.-||+ |.--+..++-| +|.-|+ +|.++++++|.++
T Consensus 527 ETieD---L~na~~vm~~ll~l~~yR~~l~~~~n~QEVMl----GYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~L 599 (910)
T COG2352 527 ETIED---LDNAPDVMTQLLNLPLYRALLAGRGNVQEVML----GYSDSNKDGGYLAANWALYKAQLALVELCEKAGVEL 599 (910)
T ss_pred ccHHH---HhccHHHHHHHHcChHHHHHHcCCCCceEEEe----cccccccccchhhhHHHHHHHHHHHHHHHHHhCceE
Confidence 45555 667777777765442 233 777777 77777667776 899996 5899999999999
Q ss_pred EEEEeeeccCCCCCCc
Q 008030 193 QAVMSFHQCGGNVGDS 208 (580)
Q Consensus 193 qvvmSFHqCGGNVGD~ 208 (580)
+- ||.-||.||--
T Consensus 600 rl---FHGRGGtVGRG 612 (910)
T COG2352 600 RL---FHGRGGSVGRG 612 (910)
T ss_pred EE---EccCCCCCCCC
Confidence 85 99999999964
No 133
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=33.32 E-value=74 Score=30.12 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=63.3
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhhcC
Q 008030 145 LRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKD 224 (580)
Q Consensus 145 L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~d 224 (580)
..+||+.||+.|++=+.=|.-- .=..|.+=.+.++++||++-+..-++.| |..|... ==+|+++
T Consensus 12 w~~~k~~gi~fviikateG~~~-------~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a~~--qA~~f~~----- 75 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTSY-------VDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDAEA--QADYFLN----- 75 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTTE-------E-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHHHH--HHHHHHH-----
T ss_pred HHHHHHCCCCEEEEEeeeCCCe-------ecchHHHHHHHHHHcCCeEEEEEEeccC--CcccHHH--HHHHHHH-----
Confidence 6677999999999999765422 2245777888899999999888777765 3333100 0012222
Q ss_pred CCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhh
Q 008030 225 QDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDL 274 (580)
Q Consensus 225 pDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~ 274 (580)
.-+....-.|-+++|-+--...........++++.|.+.++..
T Consensus 76 -------~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~ 118 (181)
T PF01183_consen 76 -------QVKGGDPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKA 118 (181)
T ss_dssp -------CTHTSSTSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHH
T ss_pred -------HhcccCCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 2211122223344554411223444688999999999999665
No 134
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=33.30 E-value=4.3e+02 Score=28.21 Aligned_cols=92 Identities=10% Similarity=0.169 Sum_probs=58.4
Q ss_pred cccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCcccccc-----hH--HHHHHHHHHcCCcEEEEEeeeccCCC
Q 008030 134 TVNRKKAIDASLRALKSAG--VEGVMMDVWWGLVERDQPGHYNWG-----GY--SDLLEMAKRHGLKVQAVMSFHQCGGN 204 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~G--VdGVmvDVWWGiVE~~~P~~YdWs-----gY--~~l~~mvr~~GLKlqvvmSFHqCGGN 204 (580)
...+.+.+..-++.+++.| +|+|.+|+=|-- .-+.|+|. .- +++++-+++.|+|+.+++-=|-+-.+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~ 94 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANE 94 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCc
Confidence 3456788888888888764 689999965531 12345443 44 88899999999999888755533221
Q ss_pred CCCcccccCChhhHhhhhcCCCeeeeCCCCCc
Q 008030 205 VGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMR 236 (580)
Q Consensus 205 VGD~~~IPLP~WV~~~g~~dpDi~ytDr~G~r 236 (580)
.+.. -+ +.+++.+ .+.|.+|.+|..
T Consensus 95 ~~~~----~~--~~~e~~~-~g~~v~~~~g~~ 119 (339)
T cd06602 95 PTGS----YP--PYDRGLE-MDVFIKNDDGSP 119 (339)
T ss_pred CCCC----CH--HHHHHHH-CCeEEECCCCCE
Confidence 1111 12 2344433 478888888864
No 135
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=33.24 E-value=88 Score=38.95 Aligned_cols=65 Identities=23% Similarity=0.399 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-ee-eeee-cc----------CCCcccccch-------------------------H
Q 008030 137 RKKAIDASLRALKSAGVEGVMMD-VW-WGLV-ER----------DQPGHYNWGG-------------------------Y 178 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvD-VW-WGiV-E~----------~~P~~YdWsg-------------------------Y 178 (580)
...+|...|..||++||..|.+= |. .+.| |. .+...|+|.| .
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 46788889999999999999653 32 1112 11 0123566653 7
Q ss_pred HHHHHHHHHcCCcEEEEEeeecc
Q 008030 179 SDLLEMAKRHGLKVQAVMSFHQC 201 (580)
Q Consensus 179 ~~l~~mvr~~GLKlqvvmSFHqC 201 (580)
++|++-+++.||+|..=+-|--|
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt 580 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHT 580 (1111)
T ss_pred HHHHHHHHHCCCEEEEecccccc
Confidence 78888889999998766666334
No 136
>PRK09875 putative hydrolase; Provisional
Probab=33.10 E-value=1.5e+02 Score=31.23 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccc
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSI 211 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~I 211 (580)
+..+.+.+.....|+.+|++|+.-| ||+= |.-+ =..=..|.++.++.|+.|++.=-||.- .
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T--------~~g~-GRd~~~l~~is~~tgv~Iv~~TG~y~~---------~ 87 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMT--------NRYM-GRNAQFMLDVMRETGINVVACTGYYQD---------A 87 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecC--------CCcc-CcCHHHHHHHHHHhCCcEEEcCcCCCC---------c
Confidence 3467788999999999999999887 4431 2111 123467889999999877776666631 1
Q ss_pred cCChhhH
Q 008030 212 PLPKWVV 218 (580)
Q Consensus 212 PLP~WV~ 218 (580)
-+|.|+.
T Consensus 88 ~~p~~~~ 94 (292)
T PRK09875 88 FFPEHVA 94 (292)
T ss_pred cCCHHHh
Confidence 2788885
No 137
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=32.97 E-value=57 Score=34.64 Aligned_cols=53 Identities=26% Similarity=0.353 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCcceEEEeeeee-eecc--------CCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 141 IDASLRALKSAGVEGVMMDVWWG-LVER--------DQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 141 l~~~L~aLK~~GVdGVmvDVWWG-iVE~--------~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
.+..|++||++|++.+- | -+|. -.|++..|..+.+..+.++++|+++-.-|=|
T Consensus 149 ~~e~l~~LkeAGld~~~-----~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMP-----GGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHcCCCcCC-----CCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 45679999999998664 2 2333 2366778899999999999999998665544
No 138
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=32.40 E-value=86 Score=30.75 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 138 KKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
...++.-|+..+++|.+||++.. ++... .+.....+|-+..++.||++-..-.+
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~------~~~~~~~~l~~~l~~~gl~i~~~~~~ 67 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFP------ADYKELAELKELLADYGLEITSLAPF 67 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCC------chhhhHHHHHHHHHHcCcEEEeeccc
Confidence 45778899999999999999977 22222 12223899999999999998665444
No 139
>PRK09505 malS alpha-amylase; Reviewed
Probab=32.28 E-value=94 Score=36.66 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-eeeeeeccC-----------CCccc-------------ccchHHHHHHHHHHcCCc
Q 008030 137 RKKAIDASLRALKSAGVEGVMMD-VWWGLVERD-----------QPGHY-------------NWGGYSDLLEMAKRHGLK 191 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvD-VWWGiVE~~-----------~P~~Y-------------dWsgY~~l~~mvr~~GLK 191 (580)
+.+.|...|..||++||++|-+- |+=.+.... +...| ....+++|.+-+++.|+|
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 57889999999999999999753 321111000 00111 234689999999999999
Q ss_pred EEEEEeeeccC
Q 008030 192 VQAVMSFHQCG 202 (580)
Q Consensus 192 lqvvmSFHqCG 202 (580)
|..=+-|--+|
T Consensus 308 VilD~V~NH~~ 318 (683)
T PRK09505 308 ILFDVVMNHTG 318 (683)
T ss_pred EEEEECcCCCc
Confidence 97766663343
No 140
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=32.15 E-value=1.2e+02 Score=30.39 Aligned_cols=53 Identities=11% Similarity=0.015 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHc-CCcEE
Q 008030 139 KAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRH-GLKVQ 193 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~-GLKlq 193 (580)
-.++..|+.+|++|.++|++++=...-. ..+. .+=...+++.+++++. |+.+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~i~ 63 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSW-LSRP-LKKERAEKFKAIAEEGPSICLS 63 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCcc-CCCC-CCHHHHHHHHHHHHHcCCCcEE
Confidence 5678899999999999999886211000 0000 0115678888899998 66644
No 141
>PRK15452 putative protease; Provisional
Probab=31.87 E-value=45 Score=37.14 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=31.3
Q ss_pred cCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEee
Q 008030 114 KGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDV 160 (580)
Q Consensus 114 ~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDV 160 (580)
...+++|||.+|. +..+ ..-+.+...|+.|+.+|||||.|-=
T Consensus 56 h~~g~kvyvt~n~--i~~e---~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 56 HALGKKFYVVVNI--APHN---AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred HHcCCEEEEEecC--cCCH---HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 4467999999984 3322 2345778889999999999999853
No 142
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=31.75 E-value=78 Score=33.99 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCcceEEEee---eeeeeccC-----CCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 008030 139 KAIDASLRALKSAGVEGVMMDV---WWGLVERD-----QPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNV 205 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDV---WWGiVE~~-----~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNV 205 (580)
+.+...|++|+..|+|||-+|+ ||=..+.. ++-+=+=.-|.+|.+.+|.+.=-+++| -|.|+++
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi---~qng~~l 197 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVI---PQNGAEL 197 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEE---ecccHhh
Confidence 5788999999999999998876 54333321 222233334889999999876556555 3556554
No 143
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=31.75 E-value=92 Score=30.95 Aligned_cols=82 Identities=11% Similarity=0.068 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcccccccCcCCCcchHHHHHHHcccCcCCC
Q 008030 435 LPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLDVDKQ 514 (580)
Q Consensus 435 ~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~~~D~~ay~qI~~~~~~~~~~~ 514 (580)
..+.+.++++|..+.+.+++..|-... ....++..+++|+..++.-.|-|.=.+.. ...++..+|+..++.
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~~--~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~----- 212 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKVD--EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKE----- 212 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCCC--CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHH-----
Confidence 347889999999999999988776532 12357888899887665444544433211 134688999988864
Q ss_pred ccceeeecCCcC
Q 008030 515 MCAFTYLRMNPH 526 (580)
Q Consensus 515 ~~~FTyLRm~~~ 526 (580)
.+|+|.++.+.
T Consensus 213 -~Gy~fvtl~el 223 (224)
T TIGR02884 213 -QGYTFKSLDDL 223 (224)
T ss_pred -CCCEEEEhHHc
Confidence 55788877653
No 144
>PTZ00445 p36-lilke protein; Provisional
Probab=31.64 E-value=1.2e+02 Score=31.45 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=49.4
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccc------------hHHHHHHHHHHcCCcEEEE
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWG------------GYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWs------------gY~~l~~mvr~~GLKlqvv 195 (580)
.++..+....--+.||+.|+..|.+|.==-+|...+.|..++. ..+++++.+++.|++|.+|
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 4455666666777899999999999987777777666766664 4788999999999998766
No 145
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=31.62 E-value=39 Score=27.96 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=18.5
Q ss_pred cCCCchhHHHHHHHHHHHHHhhh
Q 008030 252 KGRTPVQCYSDFMRAFKDKFKDL 274 (580)
Q Consensus 252 ~GRTpiq~Y~DFM~SFr~~F~~~ 274 (580)
++++.....+||.++||++|..-
T Consensus 37 ~~~~~~~~~~~f~~~fk~nf~~~ 59 (77)
T PF04854_consen 37 RDEEDSYLFRDFWRAFKQNFKQS 59 (77)
T ss_pred cCCccChHHHHHHHHHHHHHHHH
Confidence 44445678999999999999875
No 146
>PLN02417 dihydrodipicolinate synthase
Probab=31.43 E-value=2.3e+02 Score=29.23 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=51.5
Q ss_pred CCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEe--eeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMD--VWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 116 ~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvD--VWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
..+||.+..-- ++.+..-...++.+++|+|+||+= .++-.- + .+-.+.|+-|.++.
T Consensus 69 ~~~pvi~gv~~---------~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~-----~----~~i~~~f~~va~~~---- 126 (280)
T PLN02417 69 GKIKVIGNTGS---------NSTREAIHATEQGFAVGMHAALHINPYYGKTS-----Q----EGLIKHFETVLDMG---- 126 (280)
T ss_pred CCCcEEEECCC---------ccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC-----H----HHHHHHHHHHHhhC----
Confidence 45777655332 122333447788899999999972 232111 1 23333444444444
Q ss_pred EEEeeeccCCCCCCcccccCChhhHhhhhcCCCe-eeeCCCCC
Q 008030 194 AVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDL-VYTDQWGM 235 (580)
Q Consensus 194 vvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi-~ytDr~G~ 235 (580)
+|+=++- . + ...+.|+.-+++...+.|.| -++|.+|+
T Consensus 127 pi~lYn~-P---~-~tg~~l~~~~l~~l~~~pni~giKdss~~ 164 (280)
T PLN02417 127 PTIIYNV-P---G-RTGQDIPPEVIFKIAQHPNFAGVKECTGN 164 (280)
T ss_pred CEEEEEC-h---h-HhCcCCCHHHHHHHhcCCCEEEEEeCCCc
Confidence 6665542 1 1 12345666677765667884 45888876
No 147
>PRK12677 xylose isomerase; Provisional
Probab=30.98 E-value=1.1e+02 Score=33.48 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCcceEEEee---e-eeeeccCCCcccccchHHHHHHHHHHcCCcEEEEE
Q 008030 140 AIDASLRALKSAGVEGVMMDV---W-WGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVM 196 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDV---W-WGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvm 196 (580)
.+...+++++.+|++||++.. | |+..... .+ ...+++-+.+++.||||..|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~----~~-~~~~~lk~~l~~~GL~v~~v~ 87 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAE----RD-RIIKRFKKALDETGLVVPMVT 87 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhh----hH-HHHHHHHHHHHHcCCeeEEEe
Confidence 467789999999999998831 1 2222110 11 147889999999999987654
No 148
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=30.81 E-value=59 Score=33.81 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=53.7
Q ss_pred cCCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 114 KGNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 114 ~~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
...+|+||-+-.|--|-- -...+...|+.+|++|.+.|+|. .|--...=.--.++.+++++.|||+.
T Consensus 64 ~~~gV~v~~GGtl~E~a~-----~q~~~~~yl~~~k~lGf~~IEiS--------dGti~l~~~~r~~~I~~~~~~Gf~v~ 130 (244)
T PF02679_consen 64 HSHGVYVYPGGTLFEVAY-----QQGKFDEYLEECKELGFDAIEIS--------DGTIDLPEEERLRLIRKAKEEGFKVL 130 (244)
T ss_dssp HCTT-EEEE-HHHHHHHH-----HTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEE
T ss_pred HHcCCeEeCCcHHHHHHH-----hcChHHHHHHHHHHcCCCEEEec--------CCceeCCHHHHHHHHHHHHHCCCEEe
Confidence 456788887776654331 15689999999999999999984 23333444556788999999999987
Q ss_pred EEEeeeccCCCCCCcccccCChhhHh
Q 008030 194 AVMSFHQCGGNVGDSVSIPLPKWVVE 219 (580)
Q Consensus 194 vvmSFHqCGGNVGD~~~IPLP~WV~~ 219 (580)
+=.--. +.+.+....+..|+..
T Consensus 131 ~EvG~K----~~~~~~~~~~~~~i~~ 152 (244)
T PF02679_consen 131 SEVGKK----DPESDFSLDPEELIEQ 152 (244)
T ss_dssp EEES-S----SHHHHTT--CCHHHHH
T ss_pred ecccCC----CchhcccCCHHHHHHH
Confidence 755422 1122333336677766
No 149
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=30.61 E-value=37 Score=37.62 Aligned_cols=33 Identities=27% Similarity=0.763 Sum_probs=25.3
Q ss_pred ccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCC-hhhHhhhhc
Q 008030 174 NWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLP-KWVVEEVDK 223 (580)
Q Consensus 174 dWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP-~WV~~~g~~ 223 (580)
.|.-|.+||..+- |-...+++.|| .|+|++.+.
T Consensus 6 Sw~nYc~LF~~iL-----------------~s~~p~~l~LPn~WlwDiiDE 39 (404)
T PF10255_consen 6 SWDNYCELFNYIL-----------------NSDGPVNLELPNQWLWDIIDE 39 (404)
T ss_pred HHHHHHHHHHHHh-----------------CCCCCcccCCCcHHHHHHHHH
Confidence 5999999999987 11225788899 599999653
No 150
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=30.55 E-value=1.8e+02 Score=35.51 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------------ccchHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY-------------NWGGYSDLLEMAKRHGLKVQAVMSFHQCGG 203 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~l~~mvr~~GLKlqvvmSFHqCGG 203 (580)
+.+++.+.|..||++||+.|-+-=-+--.. .+...| ....+++|.+.+++.||||..=+-+.-|+.
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~-gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARP-GSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCC-CCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 356889999999999999997644221110 012222 347799999999999999998888877763
No 151
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=30.45 E-value=1e+02 Score=30.79 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=43.5
Q ss_pred hHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcccccccCc
Q 008030 434 YLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALP 493 (580)
Q Consensus 434 Y~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~ 493 (580)
-..|++.+.+.|.....+|+.-.--...---..--+.++..+....++.||.++|||.--
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE~ 183 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESWLGREIDEKYIEKLKALNKRYGINPAGEGGEY 183 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcCccccCCCcee
Confidence 567999999999999999986432111000122235788888898999999999999754
No 152
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.31 E-value=1.4e+02 Score=31.36 Aligned_cols=66 Identities=14% Similarity=0.447 Sum_probs=46.4
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEee-eeeeec-cCCCcccccc-----hHHHHHHHHHHcCCcEEEEEeeec
Q 008030 135 VNRKKAIDASLRALKSAG--VEGVMMDV-WWGLVE-RDQPGHYNWG-----GYSDLLEMAKRHGLKVQAVMSFHQ 200 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~G--VdGVmvDV-WWGiVE-~~~P~~YdWs-----gY~~l~~mvr~~GLKlqvvmSFHq 200 (580)
..+.+.+..-++.+++.| +|.|.+|. |++..- +..-+.|+|. --+++++-+++.|+|+.+++.=|-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v 94 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFV 94 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcc
Confidence 346778888888888765 79999998 544221 1123356554 467888889999999999886543
No 153
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=30.03 E-value=48 Score=32.44 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCcceEEEee
Q 008030 139 KAIDASLRALKSAGVEGVMMDV 160 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDV 160 (580)
+++++.|+.|+++|||||+|.-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~ 23 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN 23 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC
Confidence 5789999999999999999863
No 154
>PRK06256 biotin synthase; Validated
Probab=29.77 E-value=58 Score=33.90 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------ccchHHHHHHHHHHcCCcEEEEEee
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHY-------NWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y-------dWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
+..|+.||++|++.|.+. +|. .+..| +|..+.+.++.++++|+++..-+=+
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~ 209 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII 209 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE
No 155
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=29.74 E-value=11 Score=39.54 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=27.6
Q ss_pred cceeeecCCcCcCCCc-cHHHHHHHHHHhcCC
Q 008030 516 CAFTYLRMNPHLFQPD-NWRQFVAFVKKMNEG 546 (580)
Q Consensus 516 ~~FTyLRm~~~lf~~~-n~~~F~~FVr~M~~~ 546 (580)
.-||.+|||..|+.|. +|..+..|+|.|...
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~alek~ 127 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALEKV 127 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHhee
Confidence 5599999999999986 699999999998776
No 156
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=29.66 E-value=70 Score=33.29 Aligned_cols=44 Identities=25% Similarity=0.479 Sum_probs=32.8
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCccccc---chHHHHHHHHHHcCCcE
Q 008030 145 LRALKSAGVEGVMMDVWWGLVERDQPGHYNW---GGYSDLLEMAKRHGLKV 192 (580)
Q Consensus 145 L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdW---sgY~~l~~mvr~~GLKl 192 (580)
+..++.+|++|||+|-+ .+.+..-||+ ..-.+..+.+|+.||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 56789999999999975 5555555554 55556677888999975
No 157
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=29.56 E-value=90 Score=32.39 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=28.1
Q ss_pred HHHHHHH-HHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHH
Q 008030 138 KKAIDAS-LRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKR 187 (580)
Q Consensus 138 ~~al~~~-L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~ 187 (580)
++.|.++ ++-++..|.|||.+|+| -.....+. .=|...|.++++.+|+
T Consensus 93 R~~fi~s~~~~~~~~~~DGidiD~w-e~p~~~~~-~~d~~~~~~~l~el~~ 141 (318)
T cd02876 93 REKLIKLLVTTAKKNHFDGIVLEVW-SQLAAYGV-PDKRKELIQLVIHLGE 141 (318)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEech-hhhcccCC-HHHHHHHHHHHHHHHH
Confidence 3444444 55668999999999974 32211111 1155667776666654
No 158
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=28.85 E-value=86 Score=32.12 Aligned_cols=95 Identities=11% Similarity=0.182 Sum_probs=53.6
Q ss_pred CCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEE--eeeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMM--DVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 116 ~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
..+||++..--. +.+..-...+..+++|+|+||+ +.|+..-+ +--..+|+++++. .++.
T Consensus 66 ~~~~vi~gv~~~---------s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~-----~~i~~~~~~i~~~---~~~p-- 126 (285)
T TIGR00674 66 GRVPVIAGTGSN---------ATEEAISLTKFAEDVGADGFLVVTPYYNKPTQ-----EGLYQHFKAIAEE---VDLP-- 126 (285)
T ss_pred CCCeEEEeCCCc---------cHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCH-----HHHHHHHHHHHhc---CCCC--
Confidence 468888775221 1233444778889999999998 44543322 2233466666553 4554
Q ss_pred EEEeeeccCCCCCCcccccCChhhHhhhhcCCCe-eeeCCCCC
Q 008030 194 AVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDL-VYTDQWGM 235 (580)
Q Consensus 194 vvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi-~ytDr~G~ 235 (580)
|+=+|- . ....++|+.-+.+.-.++|.| .+||-+|.
T Consensus 127 -i~lYn~-P----~~tg~~l~~~~l~~L~~~~~v~giK~s~~d 163 (285)
T TIGR00674 127 -IILYNV-P----SRTGVSLYPETVKRLAEEPNIVAIKEATGN 163 (285)
T ss_pred -EEEEEC-c----HHhcCCCCHHHHHHHHcCCCEEEEEeCCCC
Confidence 444441 1 112245777777765566775 55777663
No 159
>PRK04302 triosephosphate isomerase; Provisional
Probab=28.75 E-value=1.3e+02 Score=29.85 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=31.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 143 ASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
..++.||++|++||.++- +.+......-.++++.+++.||...
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~I 118 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLESV 118 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeEE
Confidence 458999999999998863 2222334446678888899888765
No 160
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.61 E-value=64 Score=34.95 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=35.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEE
Q 008030 143 ASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvv 195 (580)
..|+.++..|+++|-.+.|.=+.. .. .+.. -..++++.++++||||+|-
T Consensus 249 ~~l~~i~a~~a~~i~P~~~~l~~~-~~--~~~~-~~~~~v~~Ah~~GL~V~~W 297 (356)
T cd08560 249 PSMDELKARGVNIIAPPIWMLVDP-DE--NGKI-VPSEYAKAAKAAGLDIITW 297 (356)
T ss_pred HHHHHHHhCCccEecCchhhcccc-cc--cccc-CCHHHHHHHHHcCCEEEEE
Confidence 578999999999887755433333 22 2222 5678999999999998874
No 161
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=28.48 E-value=3.5e+02 Score=27.54 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=52.0
Q ss_pred HHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHhhhhcCCCeeeeCCC------------CCccccccccccCcccc
Q 008030 183 EMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQW------------GMRNYEYISLGCDTIPV 250 (580)
Q Consensus 183 ~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~~g~~dpDi~ytDr~------------G~rn~EyLSlg~D~~pv 250 (580)
+-|.+.+++ +|+-.|..==. .+-...-||.||.++ -|||+|..=+. -+|...+=|
T Consensus 73 ~rI~~~~~~--iivDtH~~IkT-P~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es-------- 139 (189)
T COG2019 73 KRIAEMALE--IIVDTHATIKT-PAGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLRDSRRDRDVES-------- 139 (189)
T ss_pred HHHHHhhhc--eEEeccceecC-CCccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhccccccccccc--------
Confidence 334455555 89999964322 222345599999997 47888873221 222222222
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhhhcCceeEE
Q 008030 251 LKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEI 282 (580)
Q Consensus 251 l~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI 282 (580)
---|+.-.++-|.++-..+-+.++++.=|
T Consensus 140 ---~e~i~eHqe~nR~aA~a~A~~~gatVkIV 168 (189)
T COG2019 140 ---VEEIREHQEMNRAAAMAYAILLGATVKIV 168 (189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 22367777888888888888888876555
No 162
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.99 E-value=4.9e+02 Score=27.27 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=80.7
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEee-----eeeeeccCC-CcccccchHHHHHHHHHHcCCcEEEEEee---------
Q 008030 134 TVNRKKAIDASLRALKSAGVEGVMMDV-----WWGLVERDQ-PGHYNWGGYSDLLEMAKRHGLKVQAVMSF--------- 198 (580)
Q Consensus 134 ~v~~~~al~~~L~aLK~~GVdGVmvDV-----WWGiVE~~~-P~~YdWsgY~~l~~mvr~~GLKlqvvmSF--------- 198 (580)
.+-..+.|++.++.|...|..++.+-. +-|.-|-.. .+.|.=..+++|.+.+++.|+.|+|-+-+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 566788999999999999999887622 233333322 56777788999999999999999987532
Q ss_pred ----eccCCCCC---CcccccCCh---hhHhhhhcCCCeeeeCCCCCccccccccccCcccccc---------CCCchhH
Q 008030 199 ----HQCGGNVG---DSVSIPLPK---WVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLK---------GRTPVQC 259 (580)
Q Consensus 199 ----HqCGGNVG---D~~~IPLP~---WV~~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~---------GRTpiq~ 259 (580)
++.. .++ +..++.-|. .|.+..+.=-++ | ..+|+-+|+|+..-+. .++..+.
T Consensus 92 ~~~~~~l~-~~~~~~~~l~~~~~~t~~fi~~li~ev~~~-f-------~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 92 HPEFRHLR-EVDDPPQTLCPGEPKTYDFIEEMIRQVLEL-H-------PSKYIHIGMDEAYDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred Cccccccc-ccCCCCCccCCCChhHHHHHHHHHHHHHHh-C-------CCCeEEECCCcccccCCCHHHHHhcCCCHHHH
Confidence 2111 111 122222222 111111110111 1 1589999999998642 3455667
Q ss_pred HHHHHHHHHHHHhhh
Q 008030 260 YSDFMRAFKDKFKDL 274 (580)
Q Consensus 260 Y~DFM~SFr~~F~~~ 274 (580)
|.+|++.-.+..++.
T Consensus 163 ~~~~~~~v~~~v~~~ 177 (301)
T cd06565 163 YLEHLKKVLKIIKKR 177 (301)
T ss_pred HHHHHHHHHHHHHHc
Confidence 777777666665543
No 163
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=27.43 E-value=1.3e+02 Score=30.65 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEE--eeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 008030 136 NRKKAIDASLRALKSAGVEGVMM--DVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPL 213 (580)
Q Consensus 136 ~~~~al~~~L~aLK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPL 213 (580)
.+.+......+..+++|+||||+ +.|+..-+.+ -..+|+++++ ..+|.+...---...| ..|
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~-----l~~~~~~ia~---~~~~pi~lYn~P~~~g--------~~l 142 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEG-----LYAHFKAIAE---ATDLPVILYNVPGRTG--------VNI 142 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHH-----HHHHHHHHHh---cCCCCEEEEEChhHhC--------CCC
Q ss_pred ChhhHhhhhcCCC-eeeeCCCCC--ccccccccccCccccccC
Q 008030 214 PKWVVEEVDKDQD-LVYTDQWGM--RNYEYISLGCDTIPVLKG 253 (580)
Q Consensus 214 P~WV~~~g~~dpD-i~ytDr~G~--rn~EyLSlg~D~~pvl~G 253 (580)
+.-+.+.-.+.|. +.+||.+|. +-.+++..--+++.|+.|
T Consensus 143 s~~~~~~L~~~p~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G 185 (284)
T cd00950 143 EPETVLRLAEHPNIVGIKEATGDLDRVSELIALCPDDFAVLSG 185 (284)
T ss_pred CHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHhCCCCeEEEeC
No 164
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=26.84 E-value=2.2e+02 Score=31.05 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=59.8
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCC------CcccccchHHHHHHHHHHcCCcEEEEEeee-ccCCCCCCcccccCCh
Q 008030 143 ASLRALKSAGVEGVMMDVWWGLVERDQ------PGHYNWGGYSDLLEMAKRHGLKVQAVMSFH-QCGGNVGDSVSIPLPK 215 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmvDVWWGiVE~~~------P~~YdWsgY~~l~~mvr~~GLKlqvvmSFH-qCGGNVGD~~~IPLP~ 215 (580)
.++++..++|++.|.+-+ .+-|... ...-.+.-++++.+++|+.||++++.+|.- .|- |.-.++ |.
T Consensus 125 ~die~A~~~g~~~v~i~~--s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p----~~~r~~-~~ 197 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFA--SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP----IEGPVP-PS 197 (347)
T ss_pred HHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC----ccCCCC-HH
Confidence 455556678999887765 4433221 233456678889999999999999777532 221 222233 66
Q ss_pred hhHhhhhc-----CCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHH
Q 008030 216 WVVEEVDK-----DQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKF 271 (580)
Q Consensus 216 WV~~~g~~-----dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F 271 (580)
.|.+..+. -..|.+.|-.|. -+|.| ..++++..+++|
T Consensus 198 ~l~~~~~~~~~~Gad~I~l~DT~G~------------------a~P~~-v~~lv~~l~~~~ 239 (347)
T PLN02746 198 KVAYVAKELYDMGCYEISLGDTIGV------------------GTPGT-VVPMLEAVMAVV 239 (347)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcCC------------------cCHHH-HHHHHHHHHHhC
Confidence 76664321 113444554444 34644 456667777654
No 165
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=26.82 E-value=1.5e+02 Score=31.15 Aligned_cols=76 Identities=26% Similarity=0.469 Sum_probs=56.3
Q ss_pred CCccEEEeeec---ceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcE
Q 008030 116 NGVPVFVMMPL---DSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKV 192 (580)
Q Consensus 116 ~~vpvyVMlPL---d~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 192 (580)
..+|||+|.== |-|=++ ...+.|+...+..|++|++||.+-+ . ..+++.|=.--++|.+.+. ||-+
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~---~E~~iM~~DI~~~~~lG~~GVV~G~----l--t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSD---DELEIMLEDIRLARELGVQGVVLGA----L--TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccCh---HHHHHHHHHHHHHHHcCCCcEEEee----e--cCCCccCHHHHHHHHHHcc--CCce
Confidence 78999999732 111111 2456889999999999999998754 2 4689999999999988877 6666
Q ss_pred EEEEeeeccC
Q 008030 193 QAVMSFHQCG 202 (580)
Q Consensus 193 qvvmSFHqCG 202 (580)
--=+.|-.|-
T Consensus 119 TFHrAFD~~~ 128 (241)
T COG3142 119 TFHRAFDECP 128 (241)
T ss_pred eeehhhhhcC
Confidence 6557776664
No 166
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=26.72 E-value=1.2e+02 Score=32.48 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=42.4
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeee--eeeccCCCcccccchHHHHHHHHHHcCC
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWW--GLVERDQPGHYNWGGYSDLLEMAKRHGL 190 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWW--GiVE~~~P~~YdWsgY~~l~~mvr~~GL 190 (580)
...-.+++-+.---++.+.+|+||+|+.|-= ...=++++||.+...+++|.+-++..+.
T Consensus 222 SH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 222 SHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred CCcccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 3334455555555566789999999999852 1222367999999999999999887654
No 167
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=26.68 E-value=1.6e+02 Score=34.97 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCcceEEEe--eeeeeeccCCCcccccchHHHHH-HHHHHc--CCcEEEEEeeeccCCCCCCcccccC
Q 008030 139 KAIDASLRALKSAGVEGVMMD--VWWGLVERDQPGHYNWGGYSDLL-EMAKRH--GLKVQAVMSFHQCGGNVGDSVSIPL 213 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvD--VWWGiVE~~~P~~YdWsgY~~l~-~mvr~~--GLKlqvvmSFHqCGGNVGD~~~IPL 213 (580)
.+++..++.|.++|++-|-+| .| +|.-.-.+-+|..|.+.+ +..+.+ |++--.-+..|-|-||++|- +
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL---~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i----~ 647 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPAL---REGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEI----I 647 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchh---hhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHH----H
Confidence 467788899999999999998 34 332211223566665443 333332 55422334899999987632 1
Q ss_pred ChhhHhhhhcCCCeeeeC
Q 008030 214 PKWVVEEVDKDQDLVYTD 231 (580)
Q Consensus 214 P~WV~~~g~~dpDi~ytD 231 (580)
.++ .+.+-|.++-|
T Consensus 648 -~~l---~~l~vD~i~lE 661 (750)
T TIGR01371 648 -ESI---ADLDADVISIE 661 (750)
T ss_pred -HHH---HhCCCCEEEEE
Confidence 222 34566777766
No 168
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=26.50 E-value=1.3e+02 Score=31.56 Aligned_cols=57 Identities=25% Similarity=0.446 Sum_probs=40.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---c---chHHHHHHHHHHcCCc
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---W---GGYSDLLEMAKRHGLK 191 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---W---sgY~~l~~mvr~~GLK 191 (580)
+++|......+.-.++|+ .|+--|++|||=| +...|-.|- + =..+++.+.||+.+.+
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg--~~~eP~v~HG~t~t~~i~f~~v~~~I~~~aF~ 85 (257)
T cd08593 23 EDQLKGPSSTEAYIRALK-KGCRCVELDCWDG--PDGEPIIYHGHTLTSKILFKDVIQAIREYAFK 85 (257)
T ss_pred CCcccCCccHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCccccCcCHHHHHHHHHHHhcc
Confidence 456666667777777777 8999999999987 222244332 1 2358999999998866
No 169
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=26.39 E-value=52 Score=33.95 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=16.7
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEee
Q 008030 135 VNRKKAIDASLRALKSAGVEGVMMDV 160 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~GVdGVmvDV 160 (580)
||+++. +++|.+.|||||.+|.
T Consensus 238 VN~~~~----~~~l~~~GVDgIiTD~ 259 (263)
T cd08580 238 INTADD----YRLAKCLGADAVMVDS 259 (263)
T ss_pred eCCHHH----HHHHHHcCCCEEEeCC
Confidence 455544 5579999999999983
No 170
>PRK02227 hypothetical protein; Provisional
Probab=26.28 E-value=82 Score=32.82 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=34.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcc---cccchHHHHHHHHHHcCCcE
Q 008030 143 ASLRALKSAGVEGVMMDVWWGLVERDQPGH---YNWGGYSDLLEMAKRHGLKV 192 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~---YdWsgY~~l~~mvr~~GLKl 192 (580)
.-+..++++|++|+|+|-+ .+.+-.- +++..-.++.+++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 3577889999999999965 5555444 45566667778899999975
No 171
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.14 E-value=3e+02 Score=21.89 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEE
Q 008030 140 AIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvv 195 (580)
.++.-++++|+.|.+.|- +.+-. +-.++.++.+.+++.|+|+.+=
T Consensus 16 ~~~~~~~~a~~~g~~~v~------iTDh~-----~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIA------ITDHG-----NLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEE------EeeCC-----cccCHHHHHHHHHHcCCeEEEE
Confidence 366788999999999984 45543 5677889999999999887653
No 172
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=26.07 E-value=6.2e+02 Score=26.64 Aligned_cols=87 Identities=10% Similarity=0.173 Sum_probs=56.8
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCcccccc-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008030 135 VNRKKAIDASLRALKSAG--VEGVMMDVWWGLVERDQPGHYNWG-----GYSDLLEMAKRHGLKVQAVMSFHQCGGNVGD 207 (580)
Q Consensus 135 v~~~~al~~~L~aLK~~G--VdGVmvDVWWGiVE~~~P~~YdWs-----gY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD 207 (580)
-++.+.++.-++.+++.+ +|.|.+|+=|- .+-+.|+|. .-+++++-+++.|+|+.+++.=|-+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~----- 90 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV----- 90 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC-----
Confidence 456778888888888765 69999997552 123455554 47889999999999988877554221
Q ss_pred cccccCChhhHhhhhcCCCeeeeCCCCC
Q 008030 208 SVSIPLPKWVVEEVDKDQDLVYTDQWGM 235 (580)
Q Consensus 208 ~~~IPLP~WV~~~g~~dpDi~ytDr~G~ 235 (580)
+.. -|.+ +++. +.+.|.++..|.
T Consensus 91 ~~~--~~~~--~~~~-~~~~~v~~~~g~ 113 (317)
T cd06600 91 DQN--YSPF--LSGM-DKGKFCEIESGE 113 (317)
T ss_pred CCC--ChHH--HHHH-HCCEEEECCCCC
Confidence 110 2232 2332 357888888775
No 173
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.93 E-value=2.1e+02 Score=29.63 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcC--cceEEEee-eeeeecc----CCCccccc-----chHHHHHHHHHHcCCcEEEEE
Q 008030 137 RKKAIDASLRALKSAG--VEGVMMDV-WWGLVER----DQPGHYNW-----GGYSDLLEMAKRHGLKVQAVM 196 (580)
Q Consensus 137 ~~~al~~~L~aLK~~G--VdGVmvDV-WWGiVE~----~~P~~YdW-----sgY~~l~~mvr~~GLKlqvvm 196 (580)
+.+.+++-++.+++.| +|+|.+|+ |.+--++ .+=+.|.| -..+++++-+++.|+|+.+++
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 5677888888888764 69999998 5432221 11234444 456788888888899877665
No 174
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=25.85 E-value=1.3e+02 Score=34.02 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeee
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
+.+.|....+.++++|...||+|+.+|+ ++-+.|.+.+++.+|-|+.=-++|
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G~-----------~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTGF-----------TAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeeccccc-----------chHHHHHHHhhhcCceEEeccccc
Confidence 3689999999999999999999977653 445667777778877776655555
No 175
>PRK14706 glycogen branching enzyme; Provisional
Probab=25.82 E-value=1.6e+02 Score=34.51 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=45.1
Q ss_pred CcccCHHHHHHHH-HHHHHcCcceEEEeeeeeeeccCCCcccccch-----------------HHHHHHHHHHcCCcEEE
Q 008030 133 NTVNRKKAIDASL-RALKSAGVEGVMMDVWWGLVERDQPGHYNWGG-----------------YSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 133 ~~v~~~~al~~~L-~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsg-----------------Y~~l~~mvr~~GLKlqv 194 (580)
+++-..+.+...| ..||++||..|++== |.|- |...+|.| .++|.+.+.++|++|..
T Consensus 161 g~~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 161 GWFLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3345667787787 689999999998632 4452 55556754 68899999999999876
Q ss_pred EEeee
Q 008030 195 VMSFH 199 (580)
Q Consensus 195 vmSFH 199 (580)
=+-+.
T Consensus 236 D~v~n 240 (639)
T PRK14706 236 DWVPG 240 (639)
T ss_pred Eeccc
Confidence 65553
No 176
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=25.68 E-value=1.5e+02 Score=31.19 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=48.3
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---ccc---hHHHHHHHHHHcCCc-----EEEEEeeec
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY---NWG---GYSDLLEMAKRHGLK-----VQAVMSFHQ 200 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y---dWs---gY~~l~~mvr~~GLK-----lqvvmSFHq 200 (580)
+++|......++..++|+ .|+--|++|||=|--....|-.| .+. ..+++.+.||+...+ |+..|--|.
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc 101 (258)
T cd08625 23 AGQLTGLSSVEMYRQVLL-TGCRCIELDCWKGRPPEEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFENHV 101 (258)
T ss_pred CCccCCccCHHHHHHHHH-cCCCEEEEEecCCCCCCCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 467777778888888885 89999999999874222234433 222 368999999997766 566666674
No 177
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=25.31 E-value=57 Score=35.66 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=32.5
Q ss_pred HHHHHHHc-CcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 144 SLRALKSA-GVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 144 ~L~aLK~~-GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
.|..+++. ||+||..-..+--+ ...++-..-+++-+.|.++||+|-||=|+
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 57788886 99999998866332 22333345577888999999999998654
No 178
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=25.13 E-value=1.9e+02 Score=29.14 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=46.8
Q ss_pred eeecceecCCCcccCHHHHHHHHHHHH-----HcCcc----eEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEE
Q 008030 123 MMPLDSVTMSNTVNRKKAIDASLRALK-----SAGVE----GVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQ 193 (580)
Q Consensus 123 MlPLd~V~~~~~v~~~~al~~~L~aLK-----~~GVd----GVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 193 (580)
++|-+.|. ++.+.|.++.+.-|++|| .+|.. -|.|++|+.-+|+ +.+.+.++.+||++.
T Consensus 25 ~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 25 MQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEVL 92 (239)
T ss_pred eccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCceE
Confidence 34444444 467888999999999998 34543 4678888877766 688899999999997
Q ss_pred EEEe
Q 008030 194 AVMS 197 (580)
Q Consensus 194 vvmS 197 (580)
.++.
T Consensus 93 ~li~ 96 (239)
T TIGR02529 93 HVLD 96 (239)
T ss_pred EEee
Confidence 6654
No 179
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=25.12 E-value=1.7e+02 Score=27.13 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcc
Q 008030 431 RDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPL 486 (580)
Q Consensus 431 rdGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~l 486 (580)
.-|+..+.+.+++..+.|.|-+-+ ++|.++...+...|++++|++
T Consensus 32 v~G~~~v~kaikkgkakLVilA~D-----------~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 32 KKGTNETTKAVERGIAKLVVIAED-----------VDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred eEcHHHHHHHHHcCCccEEEEeCC-----------CChHHHHHHHHHHHHHcCCCE
Confidence 368999999999999999998754 668888999999999999995
No 180
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=24.91 E-value=1.7e+02 Score=32.18 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccC----CCcccccchHHHHHHHHHHcCCcEEEEEeeec
Q 008030 141 IDASLRALKSAGVEGVMMDVWWGLVERD----QPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQ 200 (580)
Q Consensus 141 l~~~L~aLK~~GVdGVmvDVWWGiVE~~----~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHq 200 (580)
-+.-|..||+.||.-|.+-||=-=-... +-|.=|-..-.++++-+++.|+| |.+-||-
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmK--Vl~dFHY 126 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMK--VLLDFHY 126 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcE--EEeeccc
Confidence 3456889999999999999994322111 12223333334555555666766 5789993
No 181
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=24.86 E-value=1.3e+02 Score=31.62 Aligned_cols=69 Identities=25% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCccEEEeeecceecCCCcccCHHHHHHHHHHHHH-cCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcC
Q 008030 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKS-AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHG 189 (580)
Q Consensus 116 ~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~-~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~G 189 (580)
.+.+.-||.||.-=+--++..+++.+...||+||- +--.||. |+||+-|=..-.-..--+-.+.|+.+|
T Consensus 95 cGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 95 CGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred cCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhC
No 182
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=24.59 E-value=2.8e+02 Score=26.38 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=48.2
Q ss_pred EEeceeeecCCCCCChh-hh---cccccCCCCCCChHHHHHHHHHcCCEEEEeeccccCCCCC---CCCCCChHHHHHHH
Q 008030 403 VKVAGIHWHYGSRSHAP-EL---TAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQP---QDALCAPEKLVKQV 475 (580)
Q Consensus 403 aKV~GIHWwY~t~SHaA-EL---TAGyYNt~~rdGY~~Ia~mfarh~~~l~FTClEM~D~eqp---~~a~s~Pe~Lv~QV 475 (580)
+++.|+||+|....... .. .-|+ .....-|.++++.|++. ++..+++++....+ .....+-+.+++.|
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 37899999998654321 11 1132 22344588999999874 55666788764432 22134678888888
Q ss_pred HHHHHhcCC
Q 008030 476 ASATQKAHV 484 (580)
Q Consensus 476 ~~aA~~~GV 484 (580)
.+.....++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 888776553
No 183
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=24.45 E-value=1.8e+02 Score=30.79 Aligned_cols=65 Identities=23% Similarity=0.422 Sum_probs=44.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc-cc-----hHHHHHHHHHHcCCc-----EEEEEeee
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN-WG-----GYSDLLEMAKRHGLK-----VQAVMSFH 199 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd-Ws-----gY~~l~~mvr~~GLK-----lqvvmSFH 199 (580)
+++|......+...++|+ .|+--|++|||=| +...|-.|- |+ ..+++.+.||+...+ |+..|--|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~S~yPvIlsLE~H 98 (258)
T cd08629 23 EDQLTGPSSTEAYIRALC-KGCRCLELDCWDG--PNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENH 98 (258)
T ss_pred CCccCCccCHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 456666667777777777 8999999999987 222243332 22 578999999998776 45555555
No 184
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=24.24 E-value=1.6e+02 Score=30.98 Aligned_cols=64 Identities=22% Similarity=0.508 Sum_probs=44.2
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---ccch---HHHHHHHHHHcCCc---EEEEEee
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHY---NWGG---YSDLLEMAKRHGLK---VQAVMSF 198 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y---dWsg---Y~~l~~mvr~~GLK---lqvvmSF 198 (580)
+++|......+.-.++|+ .|+--|++|||=| +...|-.| .+.. .+++.+.|++.+.+ +=+|+|+
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~~s~yPvIlsl 95 (258)
T cd08631 23 EDQLRGQSSVEGYIRALK-RGCRCVEVDVWDG--PNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQVSDYPVILSL 95 (258)
T ss_pred CCcccCccCHHHHHHHHH-cCCcEEEEEeecC--CCCCcEEeeCCcccCCcCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 466766677787778887 5999999999987 22223332 2222 78999999999877 2344544
No 185
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=24.16 E-value=1.6e+02 Score=31.96 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=44.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccch-----HHHHHHHHHHcCCcEEE
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGG-----YSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsg-----Y~~l~~mvr~~GLKlqv 194 (580)
-|.+.+.+++...-+.||++|.+-+...+| +..-.-|.|.| ++-|.+.+++.||.+..
T Consensus 100 PCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 100 PCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred cCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcEEE
Confidence 456788999999999999999996555555 33333366665 99999999999998754
No 186
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=24.14 E-value=2.2e+02 Score=30.62 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccc----------ccchHHHHHHHHHHcCCc
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPGHY----------NWGGYSDLLEMAKRHGLK 191 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Y----------dWsgY~~l~~mvr~~GLK 191 (580)
..++++||++||+++.+-+ |.-.+..| +|..-.+-.+.++++|++
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4577999999999998853 43223333 444556778999999997
No 187
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=23.92 E-value=2.1e+02 Score=31.94 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHH--HcCCcEEEEEeee
Q 008030 139 KAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAK--RHGLKVQAVMSFH 199 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr--~~GLKlqvvmSFH 199 (580)
+.|....+.++++|+.+||+|+++ .||..+-.+.+ +.+|-|+.=-+||
T Consensus 214 ~em~~ra~~a~~~G~~~~m~~~~~-------------~G~~al~~l~~~~~~~lpIhaHra~~ 263 (407)
T PRK09549 214 FELKEKAKRAAEAGADALLFNVFA-------------YGLDVLQSLAEDPEIPVPIMAHPAVS 263 (407)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc-------------cchHHHHHHHhcCCCCcEEEecCCcc
Confidence 578999999999999999999865 35555666666 4456555545566
No 188
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=23.89 E-value=1.2e+02 Score=32.38 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCcceEEEe-eeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCC----C------
Q 008030 139 KAIDASLRALKSAGVEGVMMD-VWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVG----D------ 207 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvD-VWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVG----D------ 207 (580)
++++..+++|..+|++-|-+| ..|.. .+.. .=..|.+.+..+-+ |++.. +..|-|-||-+ |
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~----~~~~-~~~~~v~~~n~~~~-g~~~~--v~~HvC~G~~~~~~~~~~~~~~ 227 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNV----FFDE-VNDWGVAALERAIE-GLKCE--TAVHICYGYGIKANTDWKKTLG 227 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhh----hhHH-HHHHHHHHHHHHHc-CCCCc--eEEEEeCCCCCCCccccccccc
Confidence 477888999999999999998 22331 0100 01233344444433 66655 44599988863 1
Q ss_pred -----cccccCChhhHhhhhcCCCeeeeCCCCCc-cccccccccCcccc---ccCCCchhHHHHHHHHHHHHHhhhh
Q 008030 208 -----SVSIPLPKWVVEEVDKDQDLVYTDQWGMR-NYEYISLGCDTIPV---LKGRTPVQCYSDFMRAFKDKFKDLL 275 (580)
Q Consensus 208 -----~~~IPLP~WV~~~g~~dpDi~ytDr~G~r-n~EyLSlg~D~~pv---l~GRTpiq~Y~DFM~SFr~~F~~~l 275 (580)
-..| +|. ..+.+-|.|+-+=...| ..|-|.+..|..-+ ++-++|.=.-.|..+.=-.++.+++
T Consensus 228 ~~~g~y~~i-~~~----l~~~~vd~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v 299 (339)
T PRK09121 228 SEWRQYEEA-FPK----LQKSNIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFV 299 (339)
T ss_pred cccccHHHH-HHH----HHhCCCCEEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhC
Confidence 0111 222 23456777775533222 23444444343222 3556654444555555555555554
No 189
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.51 E-value=1.6e+02 Score=30.27 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEE--eeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccC
Q 008030 136 NRKKAIDASLRALKSAGVEGVMM--DVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPL 213 (580)
Q Consensus 136 ~~~~al~~~L~aLK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPL 213 (580)
.+.+......+.++++|+|+||+ +.|...-+.+ =..+|+++++-+ +|.+...-.--.+| +.|
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~-----i~~~~~~ia~~~---~~pv~lYn~P~~~g--------~~l 143 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEG-----LYQHFKAIAEAT---DLPIILYNVPGRTG--------VDI 143 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHH-----HHHHHHHHHhcC---CCCEEEEECccccC--------CCC
Q ss_pred ChhhHhhhhcCCC-eeeeCCCCC--ccccccccccCccccccC
Q 008030 214 PKWVVEEVDKDQD-LVYTDQWGM--RNYEYISLGCDTIPVLKG 253 (580)
Q Consensus 214 P~WV~~~g~~dpD-i~ytDr~G~--rn~EyLSlg~D~~pvl~G 253 (580)
+.=+...-.+.|. +.++|-+|. +-.+++...-|++.||.|
T Consensus 144 ~~~~~~~L~~~p~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G 186 (292)
T PRK03170 144 LPETVARLAEHPNIVGIKEATGDLERVSELIELVPDDFAVYSG 186 (292)
T ss_pred CHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHhCCCCeEEEEC
No 190
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=23.22 E-value=80 Score=29.97 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.8
Q ss_pred HHHHHHHcCcceEEEeeeee
Q 008030 144 SLRALKSAGVEGVMMDVWWG 163 (580)
Q Consensus 144 ~L~aLK~~GVdGVmvDVWWG 163 (580)
++++..++|+++|++||+.-
T Consensus 15 af~~A~~~G~~~iE~Dv~lT 34 (256)
T PF03009_consen 15 AFRAAIELGADGIELDVQLT 34 (256)
T ss_dssp HHHHHHHTTSSEEEEEEEE-
T ss_pred HHHHHHHhCCCeEccccccc
Confidence 45556788999999999974
No 191
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.09 E-value=1.4e+02 Score=32.36 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 008030 140 AIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNV 205 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNV 205 (580)
.+.-+.+.+|.+|+|+|.+=|+||.=+...-++-....-.+|.+-|++.||-+..-+-...-|+++
T Consensus 107 ~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~ 172 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSD 172 (340)
T ss_pred cccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccc
Confidence 344456789999999999999999432211155677778899999999999987744344444443
No 192
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=22.97 E-value=89 Score=34.36 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=41.7
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChh
Q 008030 144 SLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKW 216 (580)
Q Consensus 144 ~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~W 216 (580)
.|..++++||+||.... -..-....+.-.--+++-++|.++||.|-||=|- +|-++..+-+|.|
T Consensus 15 ~l~~irQ~Gv~gIV~aL----h~iP~g~~W~~~~I~~~k~~ie~~Gl~~~vvESv-----PvhedIK~g~~~r 78 (362)
T COG1312 15 TLEDIRQAGVKGVVTAL----HHIPAGEVWPVEEILKRKEEIESAGLTWSVVESV-----PVHEDIKLGTPTR 78 (362)
T ss_pred cHHHHHHhCccceeccC----CCCCCCCcCcHHHHHHHHHHHHHcCceEEeecCC-----CHHHHHHhcCCcH
Confidence 46788888999997532 2222222333444578889999999999999775 3444444445544
No 193
>PRK05402 glycogen branching enzyme; Provisional
Probab=22.93 E-value=2.1e+02 Score=33.74 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=44.2
Q ss_pred CcccCHHHHHHHH-HHHHHcCcceEEEeeeeeeeccCCCcccccch-----------------HHHHHHHHHHcCCcEEE
Q 008030 133 NTVNRKKAIDASL-RALKSAGVEGVMMDVWWGLVERDQPGHYNWGG-----------------YSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 133 ~~v~~~~al~~~L-~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsg-----------------Y~~l~~mvr~~GLKlqv 194 (580)
+..-..+++...| ..||++||+.|.+== |.| .|...+|.| .++|++-+++.||||..
T Consensus 259 ~~~g~~~~i~~~l~~ylk~LGv~~i~L~P---i~e--~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 259 GRFLSYRELADQLIPYVKEMGFTHVELLP---IAE--HPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred CcccCHHHHHHHHHHHHHHcCCCEEEECC---ccc--CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3444567888886 999999999997632 123 132233432 68899999999999876
Q ss_pred EEeeeccC
Q 008030 195 VMSFHQCG 202 (580)
Q Consensus 195 vmSFHqCG 202 (580)
=+-|--|+
T Consensus 334 D~V~NH~~ 341 (726)
T PRK05402 334 DWVPAHFP 341 (726)
T ss_pred EECCCCCC
Confidence 66663343
No 194
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.77 E-value=2.5e+02 Score=27.14 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=39.7
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeecc
Q 008030 144 SLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQC 201 (580)
Q Consensus 144 ~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqC 201 (580)
.+.+||+.||+.|.+=+.-|. . |.=..|.+-.+-++++||++-+..=++.|
T Consensus 16 d~~~vk~~gi~fviiKateG~------~-~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~ 66 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEGG------D-HVDKRFAENWRGARAAGLPRGAYHFFTFC 66 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCCC------C-ccCHHHHHHHHHHHHcCCceEEEEEEecC
Confidence 477889999999999986442 2 33367778888899999999888777754
No 195
>PRK08445 hypothetical protein; Provisional
Probab=22.63 E-value=1.3e+02 Score=32.37 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCcc---eEEEe-----eeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEee
Q 008030 141 IDASLRALKSAGVE---GVMMD-----VWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSF 198 (580)
Q Consensus 141 l~~~L~aLK~~GVd---GVmvD-----VWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSF 198 (580)
.+.+|++||++|++ |+.+. |= +.-.|+.-.-..|.+..+.++++||++-.-|=|
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~----~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVR----DIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHH----HhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
No 196
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=22.50 E-value=2.1e+02 Score=27.59 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeee
Q 008030 141 IDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 141 l~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
++.-++.++.+|++.|.+--+. +..++.+.+++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 5667788899999998732211 256678899999999 999999998
No 197
>PLN03231 putative alpha-galactosidase; Provisional
Probab=22.50 E-value=91 Score=34.12 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=33.9
Q ss_pred HHHHHcCcceEEEeeeeeeecc----------------CCCcccc-----cc------hHHHHHHHHHHcCCcEEE
Q 008030 146 RALKSAGVEGVMMDVWWGLVER----------------DQPGHYN-----WG------GYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 146 ~aLK~~GVdGVmvDVWWGiVE~----------------~~P~~Yd-----Ws------gY~~l~~mvr~~GLKlqv 194 (580)
+-||.+|-+-|.||.=|-.-++ ..-++.- |- |.+.|++.|++.|||+=.
T Consensus 29 ~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKfGI 104 (357)
T PLN03231 29 ETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKLGI 104 (357)
T ss_pred cchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCcceEE
Confidence 4789999999999855532211 1122222 22 899999999999999844
No 198
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=22.44 E-value=2.2e+02 Score=29.86 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=51.9
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccc------chHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCC--
Q 008030 143 ASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW------GGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLP-- 214 (580)
Q Consensus 143 ~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdW------sgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP-- 214 (580)
.++++..++|++.|.+-+ .+-|...-.++++ .-++++.+++++.||++++.+ .|...-++.
T Consensus 78 ~die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~~ 146 (279)
T cd07947 78 EDLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYGF 146 (279)
T ss_pred HHHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCcccc
Confidence 345555667999888754 4444433334443 457788888999999988777 344333333
Q ss_pred --hhhHhhhh----cCCC--eeeeCCCCCcc
Q 008030 215 --KWVVEEVD----KDQD--LVYTDQWGMRN 237 (580)
Q Consensus 215 --~WV~~~g~----~dpD--i~ytDr~G~rn 237 (580)
.|+.+..+ .-.| |-+.|--|.-+
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~ 177 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYGV 177 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEeccCCCcCC
Confidence 57777654 3344 44677666543
No 199
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=22.20 E-value=2e+02 Score=29.78 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=44.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---cc---hHHHHHHHHHHcCCc-----EEEEEeeec
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYN---WG---GYSDLLEMAKRHGLK-----VQAVMSFHQ 200 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~Yd---Ws---gY~~l~~mvr~~GLK-----lqvvmSFHq 200 (580)
+++|......+...++| ..|+--|++|||=| +...|-.|- .. ..+++.+.||+.+.+ |+..|--|.
T Consensus 23 g~Ql~~~ss~e~Y~~aL-~~GcRcvElD~wdg--~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlSlE~Hc 99 (227)
T cd08594 23 GDQLLSQSRVDMYARVL-QAGCRCVEVDCWDG--PDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEYPVILSIENHC 99 (227)
T ss_pred CCcccCcccHHHHHHHH-HhCCcEEEEEeecC--CCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCCCEEEEecccC
Confidence 34566556667667777 78999999999987 222244332 11 268899999998776 455555664
Q ss_pred c
Q 008030 201 C 201 (580)
Q Consensus 201 C 201 (580)
|
T Consensus 100 s 100 (227)
T cd08594 100 S 100 (227)
T ss_pred C
Confidence 3
No 200
>PRK06233 hypothetical protein; Provisional
Probab=22.16 E-value=1.9e+02 Score=31.30 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCcceEEEe-eeeee-eccCCC-cc--cccchHHHHHHH----HHH--cCCcEEEEEeeeccCCCCC
Q 008030 138 KKAIDASLRALKSAGVEGVMMD-VWWGL-VERDQP-GH--YNWGGYSDLLEM----AKR--HGLKVQAVMSFHQCGGNVG 206 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvD-VWWGi-VE~~~P-~~--YdWsgY~~l~~m----vr~--~GLKlqvvmSFHqCGGNVG 206 (580)
.++++..+++|..+|++-|-+| ..|+. .+.... .. -.|..|.++++. +.. .|+.--..+++|-|-||..
T Consensus 170 A~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 170 AQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCC
Confidence 3578888999999999999997 45652 221111 01 124455444443 111 2554455679999988873
Q ss_pred Cccc--ccCChhhHhhhhcCCCeeeeCCCCCc--cccccccc-c---Cccc---cccCCCchhHHHHHHHHHHHHHhhhh
Q 008030 207 DSVS--IPLPKWVVEEVDKDQDLVYTDQWGMR--NYEYISLG-C---DTIP---VLKGRTPVQCYSDFMRAFKDKFKDLL 275 (580)
Q Consensus 207 D~~~--IPLP~WV~~~g~~dpDi~ytDr~G~r--n~EyLSlg-~---D~~p---vl~GRTpiq~Y~DFM~SFr~~F~~~l 275 (580)
..-. .+.-.=.....+.+-|.||-+=...| +-|.|..- . ++.- |++-++|.=.-.|.++.=-.+..+|+
T Consensus 250 ~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v 329 (372)
T PRK06233 250 STYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEYV 329 (372)
T ss_pred CcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhC
Confidence 1100 00000011123446676665533222 22333321 1 1111 13445555555555555555555555
No 201
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=22.04 E-value=2.1e+02 Score=26.24 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcc
Q 008030 431 RDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPL 486 (580)
Q Consensus 431 rdGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~l 486 (580)
.-|+..+.+.+++..+.|.+-+-+ ++|......+...|+..+|++
T Consensus 28 ~~G~~~v~kaikkgka~LVilA~D-----------~s~~~~~~~i~~lc~~~~Ip~ 72 (117)
T TIGR03677 28 KKGTNEVTKAVERGIAKLVVIAED-----------VEPPEIVAHLPALCEEKGIPY 72 (117)
T ss_pred eEcHHHHHHHHHcCCccEEEEeCC-----------CCcHHHHHHHHHHHHHcCCCE
Confidence 357999999999999999998654 567889999999999999984
No 202
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=22.04 E-value=1.2e+02 Score=30.34 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHH-HHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHc
Q 008030 140 AID-ASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRH 188 (580)
Q Consensus 140 al~-~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~ 188 (580)
+|. +-++.++..|.|||.+|..|.-.+ ...|.++++.+|++
T Consensus 86 ~fi~~lv~~~~~~~~DGIdiDwE~~~~~--------~~~~~~fv~~Lr~~ 127 (253)
T cd06545 86 ALVDKIINYVVSYNLDGIDVDLEGPDVT--------FGDYLVFIRALYAA 127 (253)
T ss_pred HHHHHHHHHHHHhCCCceeEEeeccCcc--------HhHHHHHHHHHHHH
Confidence 444 444566889999999999886432 35677777777664
No 203
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=22.04 E-value=1.6e+02 Score=32.94 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeee
Q 008030 138 KKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
.+.|....+.++++|...||+|+++. -|+.-+.|.+..++.+|-|+.=-++|
T Consensus 210 ~~em~~ra~~a~e~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ihaHra~~ 261 (412)
T cd08213 210 VREMERRAELVADLGGKYVMIDVVVA----------GWSALQYLRDLAEDYGLAIHAHRAMH 261 (412)
T ss_pred HHHHHHHHHHHHHhCCCeEEeecccc----------ChHHHHHHHHhccccCeEEEECCCcc
Confidence 46899999999999999999998763 34444445555546566555544444
No 204
>PLN02784 alpha-amylase
Probab=21.97 E-value=2e+02 Score=35.34 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccc-------------hHHHHHHHHHHcCCcEEEEEee-eccCC
Q 008030 138 KKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWG-------------GYSDLLEMAKRHGLKVQAVMSF-HQCGG 203 (580)
Q Consensus 138 ~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWs-------------gY~~l~~mvr~~GLKlqvvmSF-HqCGG 203 (580)
++.|...|..|+.+||++|-+.- +.+..++.-|+-. .+++|++.+++.|+|+.+=+-+ |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP---~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPP---PTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCC---CCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 78999999999999999998865 2344344445433 4788999999999998765555 66654
No 205
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=21.80 E-value=1.5e+02 Score=30.10 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred cCCCccEEEeeecceecC--CCc-c---cCHHHHHHHHHH-HHHcCcceEEEeeeeeeeccCCCccc----ccchHHHHH
Q 008030 114 KGNGVPVFVMMPLDSVTM--SNT-V---NRKKAIDASLRA-LKSAGVEGVMMDVWWGLVERDQPGHY----NWGGYSDLL 182 (580)
Q Consensus 114 ~~~~vpvyVMlPLd~V~~--~~~-v---~~~~al~~~L~a-LK~~GVdGVmvDVWWGiVE~~~P~~Y----dWsgY~~l~ 182 (580)
..++++|.+++--...+. -.. + ..++.|.++|.. |++.|.|||.+|.- .|... ++..|.+|+
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e-------~~~~~~~~~~~~~~~~~l 142 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWE-------YPSSSGDPQDKDNYTAFL 142 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEES-------STTSTSSTTHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeee-------eccccccchhhhhhhhhh
Confidence 445777777664331111 001 1 124555555554 58899999999973 45454 889999888
Q ss_pred HHHH
Q 008030 183 EMAK 186 (580)
Q Consensus 183 ~mvr 186 (580)
+.+|
T Consensus 143 ~~L~ 146 (343)
T PF00704_consen 143 KELR 146 (343)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8776
No 206
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=21.60 E-value=2.4e+02 Score=31.27 Aligned_cols=68 Identities=25% Similarity=0.390 Sum_probs=49.5
Q ss_pred CccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEE
Q 008030 117 GVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVM 196 (580)
Q Consensus 117 ~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvm 196 (580)
+.+..|.+=++-++..+.++++-++. ++..+|+.|+.+| ++|. +-+| |. ..|+-.++..|+|..++|
T Consensus 82 g~~~~Iy~K~E~~nPtGS~K~R~A~~-~~~~a~~~G~~~~-------vtet-ssGN--~G--~alA~aaa~~Gl~~~V~m 148 (419)
T TIGR01415 82 GTPARIYYKYESVSPTGSHKINTAIA-QAYYAKIEGAKRL-------VTET-GAGQ--WG--SALSLAGALFGLECKVFM 148 (419)
T ss_pred CCCceEEEEECCCCCCCCcHHHHHHH-HHHHHHHcCCCeE-------EEec-CchH--HH--HHHHHHHHHcCCcEEEEE
Confidence 34455666677777777777766555 6778889999865 4453 3344 53 789999999999999999
Q ss_pred e
Q 008030 197 S 197 (580)
Q Consensus 197 S 197 (580)
.
T Consensus 149 p 149 (419)
T TIGR01415 149 V 149 (419)
T ss_pred e
Confidence 6
No 207
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=21.53 E-value=78 Score=33.27 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=25.9
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeee
Q 008030 132 SNTVNRKKAIDASLRALKSAGVEGVMMDVWWG 163 (580)
Q Consensus 132 ~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWG 163 (580)
+++|.....++...++|+ .|+--|++|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg 53 (257)
T cd08595 23 SDQLVGPSDLDGYVSALR-KGCRCLEIDCWDG 53 (257)
T ss_pred CCcccCcccHHHHHHHHH-hCCcEEEEEeecC
Confidence 457777778888888888 8999999999965
No 208
>PLN02960 alpha-amylase
Probab=21.51 E-value=3.2e+02 Score=33.64 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=46.3
Q ss_pred cccCHHHHH-HHHHHHHHcCcceEEEeeeeeeeccCCCcccccch-----------------HHHHHHHHHHcCCcEEEE
Q 008030 134 TVNRKKAID-ASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGG-----------------YSDLLEMAKRHGLKVQAV 195 (580)
Q Consensus 134 ~v~~~~al~-~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsg-----------------Y~~l~~mvr~~GLKlqvv 195 (580)
.+-..++|. ..|..||.+||+.|.+= .|.|. |...+|.| .++|++.+.+.||+|..=
T Consensus 411 ~~gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 411 KISSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 344566776 45999999999999874 34442 44555655 799999999999998765
Q ss_pred EeeeccC
Q 008030 196 MSFHQCG 202 (580)
Q Consensus 196 mSFHqCG 202 (580)
+-+--++
T Consensus 486 vV~NH~~ 492 (897)
T PLN02960 486 IVHSYAA 492 (897)
T ss_pred ecccccC
Confidence 5554444
No 209
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.39 E-value=2.6e+02 Score=30.15 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCc------------ccccchHHHHHHHHHHcCCc-EEEEEeeeccCCCCCCc
Q 008030 142 DASLRALKSAGVEGVMMDVWWGLVERDQPG------------HYNWGGYSDLLEMAKRHGLK-VQAVMSFHQCGGNVGDS 208 (580)
Q Consensus 142 ~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~------------~YdWsgY~~l~~mvr~~GLK-lqvvmSFHqCGGNVGD~ 208 (580)
..+++.||.+||++|++-+ ++-. ..+|..-.+-.+.++++|++ +-..+=+-
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-------ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~G--------- 226 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-------ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLG--------- 226 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-------ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEec---------
Q ss_pred ccccCChhhHhhhh
Q 008030 209 VSIPLPKWVVEEVD 222 (580)
Q Consensus 209 ~~IPLP~WV~~~g~ 222 (580)
|+.|..+..+
T Consensus 227 ----lge~~~d~~~ 236 (371)
T PRK09240 227 ----LSDWRTDALM 236 (371)
T ss_pred ----CCccHHHHHH
No 210
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.26 E-value=3.8e+02 Score=27.97 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=39.5
Q ss_pred ccccCCCCCCChHHHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcc
Q 008030 423 AGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPL 486 (580)
Q Consensus 423 AGyYNt~~rdGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~l 486 (580)
=+|||+-.+-|+...++-+++.|++-..- -++ | +| -...+.+.|+++|+.+
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgvii-pDL-----P------~e-e~~~~~~~~~~~gi~~ 147 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLII-PDL-----P------YE-ESDYLISVCNLYNIEL 147 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEe-cCC-----C------HH-HHHHHHHHHHHcCCCE
Confidence 48999988899999999999999876543 222 1 23 3678889999999853
No 211
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.23 E-value=2.7e+02 Score=29.55 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=0.0
Q ss_pred CCCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEE
Q 008030 115 GNGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQA 194 (580)
Q Consensus 115 ~~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqv 194 (580)
...+|+-+|.=...|-. ..+++=++.+|++|||||.| -+--++=+. ++.+.+++.||+...
T Consensus 92 ~~~~Pivlm~Y~Npi~~-------~Gie~F~~~~~~~GvdGliv----------pDLP~ee~~--~~~~~~~~~gi~~I~ 152 (265)
T COG0159 92 GVKVPIVLMTYYNPIFN-------YGIEKFLRRAKEAGVDGLLV----------PDLPPEESD--ELLKAAEKHGIDPIF 152 (265)
T ss_pred CCCCCEEEEEeccHHHH-------hhHHHHHHHHHHcCCCEEEe----------CCCChHHHH--HHHHHHHHcCCcEEE
Q ss_pred EEe
Q 008030 195 VMS 197 (580)
Q Consensus 195 vmS 197 (580)
+.+
T Consensus 153 lva 155 (265)
T COG0159 153 LVA 155 (265)
T ss_pred EeC
No 212
>PLN02564 6-phosphofructokinase
Probab=21.16 E-value=3.7e+02 Score=30.83 Aligned_cols=94 Identities=24% Similarity=0.335 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhHh
Q 008030 140 AIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVE 219 (580)
Q Consensus 140 al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~~ 219 (580)
..++-++.||..|++++.+= .|++- -.+=..|.+.+++.|+++.+|- +|+=
T Consensus 164 ~~~~iv~~L~~~~Id~LivI--------GGDGS--~~gA~~L~e~~~~~g~~i~VIG----------------IPKT--- 214 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYII--------GGDGT--QKGASVIYEEIRRRGLKVAVAG----------------IPKT--- 214 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEE--------CCchH--HHHHHHHHHHHHHcCCCceEEE----------------eccc---
Confidence 46677899999999998652 35554 3567788899999999987752 5543
Q ss_pred hhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC-ceeEE
Q 008030 220 EVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD-TIVEI 282 (580)
Q Consensus 220 ~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~-~I~eI 282 (580)
.|.||.+||. |||.| |+++...+-.++.+++-.+.-.. .|+|+
T Consensus 215 ---IDNDI~~tD~---------T~GFd--------TAv~~~~~aI~~i~~tA~S~~~rv~iVEv 258 (484)
T PLN02564 215 ---IDNDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESVENGIGLVKL 258 (484)
T ss_pred ---ccCCCcCccc---------CCCHH--------HHHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 3779999996 56665 55799999999999887776422 36777
No 213
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=21.15 E-value=1.8e+02 Score=29.68 Aligned_cols=66 Identities=8% Similarity=-0.013 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCEEEEeeccccCCCCCCCCCCChHHHHHHHHHHHHhcCCcccccccCc---CCCcchHHH
Q 008030 436 PIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALP---RYDEYAHEQ 502 (580)
Q Consensus 436 ~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~Pe~Lv~QV~~aA~~~GV~laGENAL~---~~D~~ay~q 502 (580)
.+++|+ .+|....++|+.-.--...-=-..--+.++..+....++.||.++|||.-- .+|.--|.+
T Consensus 125 ~l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~gid~~GEgGEyhT~V~d~PlF~~ 193 (222)
T TIGR00289 125 KLMYEV-AEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYGIHLAFEGGEAETLVLDAPLFKK 193 (222)
T ss_pred HHHHHH-HcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcCccccCCCceEEEEEEeccccCc
Confidence 455665 799999999987432111000122235788899999999999999999865 456555544
No 214
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=21.10 E-value=1.7e+02 Score=28.44 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcC
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHG 189 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~G 189 (580)
|.+++++.++.||..||+.|.|=.=|+.+-+. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 57899999999999999999998777766542 3466777777765
No 215
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=21.06 E-value=1.1e+02 Score=29.49 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCccEEEeeecceecCCCcccCHHHHHHHHHHHHHcCcceEEEe
Q 008030 116 NGVPVFVMMPLDSVTMSNTVNRKKAIDASLRALKSAGVEGVMMD 159 (580)
Q Consensus 116 ~~vpvyVMlPLd~V~~~~~v~~~~al~~~L~aLK~~GVdGVmvD 159 (580)
.+.+|+|. +|++ ...++.|..+||+||.+|
T Consensus 198 ~g~~v~~w----Tvn~----------~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 198 AGYKLLVY----TVND----------PARAAELLEWGVDAIFTD 227 (229)
T ss_pred CCCEEEEE----eCCC----------HHHHHHHHHCCCCEEEcC
No 216
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=20.88 E-value=4.3e+02 Score=30.00 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeeeccCCCCCCcccccCChhhH
Q 008030 139 KAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVV 218 (580)
Q Consensus 139 ~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFHqCGGNVGD~~~IPLP~WV~ 218 (580)
..++.-++.|+..|++++.+= .|++- -.+=.+|.+.+++.|+++.+|- +|+=
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vI--------GGdgT--~~~A~~L~ee~~~~g~~I~VIG----------------IPKT-- 214 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTL--------GGDGT--HRGALAIYKELRRRKLNISVVG----------------IPKT-- 214 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEe--------CCchH--HHHHHHHHHHHHHhCCCceEEE----------------eccc--
Confidence 357778899999999998652 34443 3466788999999999987752 5553
Q ss_pred hhhhcCCCeeeeCCCCCccccccccccCccccccCCCchhHHHHHHHHHHHHHhhhhcC-ceeEE
Q 008030 219 EEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGD-TIVEI 282 (580)
Q Consensus 219 ~~g~~dpDi~ytDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~-~I~eI 282 (580)
-|.||.++|. |||.| |.++...+..++.+.+-.+.-.. .|+|+
T Consensus 215 ----IDNDI~~td~---------S~GFd--------TAv~~~~~aI~~~~~eA~S~~~~v~iVEv 258 (459)
T PTZ00286 215 ----IDNDIPIIDE---------SFGFQ--------TAVEEAQNAIRAAYVEAKSAKNGVGIVKL 258 (459)
T ss_pred ----cCCCCCCccc---------CcCch--------HHHHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 3779999995 67766 55799999999999887776322 36666
No 217
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=20.66 E-value=1.9e+02 Score=33.02 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccccchHHHHHHHHHHcCCcEEEEEeee
Q 008030 137 RKKAIDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFH 199 (580)
Q Consensus 137 ~~~al~~~L~aLK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlqvvmSFH 199 (580)
+.+.|....+.++++|..+||+|+++ +-|++-+.|.+.+++.+|-|+.=-++|
T Consensus 246 ~~~em~~ra~~a~e~G~~~~mv~~~~----------~G~~al~~l~~~~~~~~l~IhaHrA~~ 298 (475)
T CHL00040 246 TCEEMYKRAVFARELGVPIVMHDYLT----------GGFTANTSLAHYCRDNGLLLHIHRAMH 298 (475)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeccc----------cccchHHHHHHHhhhcCceEEeccccc
Confidence 46899999999999999999999876 246666777777778887777666666
No 218
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=20.27 E-value=83 Score=31.94 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=28.2
Q ss_pred HHHHHHcCcceEEEeeeee----ee-----ccCCCcccccc-hHHHHHHHHHHcC
Q 008030 145 LRALKSAGVEGVMMDVWWG----LV-----ERDQPGHYNWG-GYSDLLEMAKRHG 189 (580)
Q Consensus 145 L~aLK~~GVdGVmvDVWWG----iV-----E~~~P~~YdWs-gY~~l~~mvr~~G 189 (580)
|...-++|+++|++|||.- +| +. .+.+-=++ ++..|.++++..|
T Consensus 15 l~~Al~~g~~svEaDV~l~dg~l~V~Hd~~~l-~~~~tl~~Lyl~pL~~~l~~~n 68 (228)
T cd08577 15 LYDALSAGFGSIEADVWLVNGDLLVAHDEVDL-SPARTLESLYLDPLLEILDQNN 68 (228)
T ss_pred hHHHHHcCCCEEEEeEEEECCEEEEEcChhHc-CccCCHHHHhHHHHHHHHHHcC
Confidence 4445678999999999985 11 11 12333333 5677888887764
Done!