Query 008032
Match_columns 580
No_of_seqs 187 out of 231
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 18:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2330 Splicing factor 3b, su 100.0 5E-153 1E-157 1182.9 29.6 439 78-542 47-499 (500)
2 COG5182 CUS1 Splicing factor 3 100.0 7.2E-97 2E-101 748.6 18.4 362 3-418 2-367 (429)
3 PF04037 DUF382: Domain of unk 100.0 5.4E-73 1.2E-77 511.7 11.2 129 171-299 1-129 (129)
4 smart00581 PSP proline-rich do 99.9 5.6E-27 1.2E-31 186.0 5.6 54 303-356 1-54 (54)
5 PF04046 PSP: PSP; InterPro: 99.9 4.6E-24 1E-28 166.0 5.3 48 307-354 1-48 (48)
6 KOG2673 Uncharacterized conser 98.6 2.7E-08 5.9E-13 106.7 3.8 51 292-343 167-217 (485)
7 COG5182 CUS1 Splicing factor 3 72.1 3.4 7.4E-05 44.7 3.3 41 333-387 288-337 (429)
8 TIGR02697 WPE_wolbac Wolbachia 53.5 5.5 0.00012 30.4 0.5 10 199-208 1-10 (36)
9 PRK09350 poxB regulator PoxA; 43.2 8.3 0.00018 40.1 0.2 87 255-341 185-283 (306)
10 TIGR00462 genX lysyl-tRNA synt 34.3 16 0.00034 38.1 0.6 84 258-341 183-278 (304)
11 KOG2673 Uncharacterized conser 33.0 32 0.00069 38.8 2.6 51 302-353 43-96 (485)
12 PLN02850 aspartate-tRNA ligase 29.1 16 0.00035 41.3 -0.4 56 284-341 439-495 (530)
13 TIGR00457 asnS asparaginyl-tRN 27.1 17 0.00037 40.0 -0.6 74 266-341 342-418 (453)
14 PF03991 Prion_octapep: Copper 25.9 35 0.00076 18.8 0.7 7 363-369 2-8 (8)
15 COG5033 TFG3 Transcription ini 25.8 24 0.00051 36.4 0.1 41 191-235 8-84 (225)
16 cd00669 Asp_Lys_Asn_RS_core As 24.4 29 0.00063 35.7 0.5 73 268-341 160-238 (269)
17 cd00776 AsxRS_core Asx tRNA sy 24.0 19 0.0004 37.8 -1.0 72 268-341 216-291 (322)
18 PTZ00401 aspartyl-tRNA synthet 21.4 33 0.00072 39.1 0.2 57 283-341 458-515 (550)
19 PF08175 SspO: Small acid-solu 20.0 64 0.0014 26.6 1.5 28 344-373 6-37 (51)
No 1
>KOG2330 consensus Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=100.00 E-value=4.6e-153 Score=1182.87 Aligned_cols=439 Identities=55% Similarity=0.953 Sum_probs=374.4
Q ss_pred ccceEEeecCCCCCCchhHHHHHHHHhhccCCccCCCccccchhhhhhhh--hhcc--cCCCCCchhhhcCCcccccCCh
Q 008032 78 EKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNA--ESKK--KADSDTEDEEQDSQPKEKGLSN 153 (580)
Q Consensus 78 ~~v~vEyv~e~~~~~d~~~~~F~~Vf~kF~~~~~~~~e~~~~~~~~~~~~--~~~~--~~d~d~~dee~~~~~~~~~lSk 153 (580)
.+|+|+||.+.++++ +| +||++|+........ ..+....... .... ....++++++..++..+++||+
T Consensus 47 ~~~~~~~v~e~~ei~-----~f-~vf~~Fk~~~~~~~~--~e~~~~~~~~e~~~~~~~~~~~ed~~ed~~~~~~eeklsk 118 (500)
T KOG2330|consen 47 KGVTIEYVDEKIEIE-----FF-DVFERFKLQEMSEKK--FEKPDHVSISEKDDEKGFVHEAEDEDEDMKDDRIEEKLSK 118 (500)
T ss_pred CCceEeeecchhhhH-----HH-HHHHHHhcccccccc--cccCCcceeeccCcccccccccchhhhccccccchhhhhH
Confidence 369999999998776 66 999999987732211 1111111100 0000 0000111111112234678999
Q ss_pred HHHHHhhcCCHHHHHhhcCCCceEEeecCCCCChHHHHHHhhcCCcccCCccccchhcccccccCCCCCCCCccHHHHHh
Q 008032 154 KKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAAT 233 (580)
Q Consensus 154 kk~k~~~r~svaeLK~~v~~PevVE~~D~ta~DP~lLv~lKs~rN~VPVP~HW~~KR~YL~gkrgieK~pf~LP~~I~~T 233 (580)
||+|++.|+|||+||++|.||+|||||||||.||.|||+||+|+|+||||+|||+||+||+|+||||||||.||+||+.|
T Consensus 119 rklRk~~r~svaeLK~~v~~pdvvE~~Dvta~dP~ll~~lK~~~n~VPVPrHW~~kr~yl~G~rg~ekppfelP~~Ik~T 198 (500)
T KOG2330|consen 119 RKLRKLLRPSVAELKQLVPYPDVVEWHDVTARDPKLLVHLKAYRNSVPVPRHWNSKRKYLSGKRGIEKPPFELPDFIKKT 198 (500)
T ss_pred HHHHHhhcccHHHHhhcCCccceeeeeccCCCChHHHHHhhhccCCCcCchhhhhhhhhhccccccCCCCccchHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHhhhcCCCCccccchHHHHHHhhcccCCCCCCCCCcccccchhhHhhhhcCCCCCCCH
Q 008032 234 GIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSH 313 (580)
Q Consensus 234 GI~emR~a~~eke~~~sLKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GdlYYEGKe~e~~~~~~kPG~LS~ 313 (580)
||.+||++++|+|+.+|||+|||||||||||+||||||+||||||+|||||.||.|||||||||||+..+++++||.||+
T Consensus 199 gI~emR~a~~e~e~~~sLk~kmRerv~PkmGkidiDyqkLhdaFFk~qtkp~lt~~Ge~yyegke~e~~~k~k~PG~iS~ 278 (500)
T KOG2330|consen 199 GIQEMREALLEREAGKSLKEKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPYLTKFGELYYEGKELEAMVKEKKPGDISD 278 (500)
T ss_pred CHHHHHHHHHhhhccccHHHHHHHhhCcccccccchHHHHHHHHHhcCCCcceeecceeeecchhHHHHHhhcCccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCchHHHHhHhcCCCCCCCCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCcccccccccccCCCCC
Q 008032 314 DLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPN 393 (580)
Q Consensus 314 eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~LkIpGLNapiP~g~~~GyhpggwGKpPvDe~g~PLyGdvfG~~~~~~~~ 393 (580)
+||+||||++|.||||||+|||||||||||+|||||||||||+||+||||+|||| |||++|+||||||||...++..+
T Consensus 279 eLr~aLgmp~g~pPPWl~aMqryGpPpsYPdlkIpGLNapIPeg~s~Gyh~gGWG--pVDe~g~PLygDVfG~~~p~~~~ 356 (500)
T KOG2330|consen 279 ELRIALGMPVGTPPPWLIAMQRYGPPPSYPDLKIPGLNAPIPEGCSFGYHAGGWG--PVDEFGKPLYGDVFGLNIPEHHN 356 (500)
T ss_pred HHHHHhCCCCCCCChHHHHhhhcCCCCCCCcccCCCCCCCCCcccccccccCCCc--cccccCCccchhccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999888766
Q ss_pred CCCCCC-cccCCCCCCcchhhhhhhhhhhhh-hhhhh--------hccCccccccccccCCCCCCCcccccccccCCCCC
Q 008032 394 YEEEPV-DKSKHWGDLEEEEEEEEEEEEEEQ-IEEEE--------LEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPE 463 (580)
Q Consensus 394 ~~~e~v-~k~~~WGel~~eeeeeeeeeeeee-~~e~~--------~~~g~~~~sg~~s~~~g~etp~~~dlRK~~~~~~~ 463 (580)
...+++ ++ .+||+|+++++|++||.+|+| .+... ....+.++++++++|+|+|||+.|+|||..+.++.
T Consensus 357 ~t~es~~~r-n~wgel~~e~~E~~EEreeee~~d~~~~~e~gg~~dp~d~~~~~~Lts~ptgiEtpd~iELRK~k~ee~~ 435 (500)
T KOG2330|consen 357 GTKESEIER-NHWGELESEEEESSEEREEEEREDKNDASENGGAVDPADDIVPSGLTSFPTGIETPDAIELRKKKREEET 435 (500)
T ss_pred ccccccccc-ccccccccccchhhhhhhhhhhhhhhhhhhccccCCccccccccccccCCccccChhHHHHHhhcccccc
Confidence 554444 45 599999986555544432222 11111 11125678999999999999999999999988888
Q ss_pred CCCceeccccccccCCCcccccccEEEccCCCcCCCCccccccccCCCCCCceeecCchhhccccchhHHHHHHHHHHH
Q 008032 464 RPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYEEAREEE 542 (580)
Q Consensus 464 ~~LY~Vl~ek~~~~~~~~~~gs~~~Ydl~~~~~~~~~~~~~~~l~~~~~~~vdvsldp~el~~~~~~l~~~ye~~~~~~ 542 (580)
+.||||||||.+++.+|+||||+|+|||+++++. +++||+|||||++|+++..+| +||+++++|
T Consensus 436 r~LYqVLpEK~t~~igg~mmgstH~Ydis~~~a~-------------k~~GV~~sL~Peeld~d~~~l--~yee~~req 499 (500)
T KOG2330|consen 436 RALYQVLPEKRTSRIGGTMMGSTHTYDISTGTAD-------------KTPGVEFSLDPEELDADGMAL--RYEEQRREQ 499 (500)
T ss_pred HHHHHhccccccccccceeeccceEEeccccccc-------------cCCCceeecChhhhccchhhH--HHHHHHhhc
Confidence 9999999999999888889999999999986432 345799999999999988888 999999986
No 2
>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=100.00 E-value=7.2e-97 Score=748.56 Aligned_cols=362 Identities=35% Similarity=0.565 Sum_probs=278.5
Q ss_pred cccccccCceeccCCCcccCCCCCcccccchhHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCccccccccccccceE
Q 008032 3 ADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSNNDADNETEDEDSQSQVAEKVTV 82 (580)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~enq~RR~RrKqkKn~~as~~~~~~~~~~~~s~s~e~~D~~~~~~~~v~v 82 (580)
|+|-+.++-.-.+|+.++- |+.-.-++.-|+.||..+|++--.+-|...+ +.-+..+++. +-..+++.++|
T Consensus 2 A~~ks~k~~~nn~nK~~s~---~Nnk~e~~a~~daRR~eqK~~~~~TNSk~k~-N~~~D~K~e~-----eF~Dvlq~~qv 72 (429)
T COG5182 2 ARTKSRKRSGNNQNKNASV---VNNKAEIAAMIDARRLEQKKKGGVTNSKGKT-NKVVDAKLEK-----EFKDVLQRFQV 72 (429)
T ss_pred ccchhccCcccchhhhhhh---hccHHHHHHHHHHHHHHHHHhcCccccCCCc-chhhhhhhhh-----hHHHHHHHhcC
Confidence 5666777766666665554 5555666777899998888765432221000 0000000000 00112222322
Q ss_pred EeecCCCCCCchhHHHHHHHHhhccCCccCCCccccchhhhhhhhhhcccCCCCCch--hhhcCCcccccCChHHHHHhh
Q 008032 83 EYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKADSDTED--EEQDSQPKEKGLSNKKKKLQR 160 (580)
Q Consensus 83 Eyv~e~~~~~d~~~~~F~~Vf~kF~~~~~~~~e~~~~~~~~~~~~~~~~~~d~d~~d--ee~~~~~~~~~lSkkk~k~~~ 160 (580)
+.+|++-++|+++|..|........ ........|++- ++.-....++.||++|+|+..
T Consensus 73 -------q~ND~~~E~~KD~~N~~~~~~~k~p-------------~~~~~~~~ddE~~~ed~~~~~~ee~ls~~k~Rk~~ 132 (429)
T COG5182 73 -------QENDTPKEITKDEKNMSRMKSRKAP-------------TIHMEAEIDDEYGFEDRMKPYREESLSRQKKRKAL 132 (429)
T ss_pred -------CCCCCHHHHhHhhhhhhhhhcccCC-------------cccceeeccchhccccccCccchhhhHHHHHHHHh
Confidence 2344555555555555543321100 000011112111 111123456789999999999
Q ss_pred cCCHHHHHhhcCCCceEEeecCCCCChHHHHHHhhcCCcccCCccccchhcccccccCCCCCCCCccHHHHHhChHHHHH
Q 008032 161 RMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQ 240 (580)
Q Consensus 161 r~svaeLK~~v~~PevVE~~D~ta~DP~lLv~lKs~rN~VPVP~HW~~KR~YL~gkrgieK~pf~LP~~I~~TGI~emR~ 240 (580)
|+++++||.+|.+|+|||||||||+||.||.+||++.|+||||+||++|++||||.+++++.||+||++|..|||.+||.
T Consensus 133 ~~~~~qLK~~vpyp~I~Ew~D~~~~dP~~l~~~K~~~N~VPVPrHW~sk~~ylsg~~~~~~r~felP~~I~~TgI~qmR~ 212 (429)
T COG5182 133 QHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNGVPVPRHWRSKSRYLSGHGYHKPRPFELPRHIIGTGIPQMRR 212 (429)
T ss_pred hhhHHHHhccCCccceeeeecCCCCChhhhhhhccCCCCCCCchhhhhhhhcccccccCCCCcccchHHHhhcChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHhhhcCCCCccccchHHHHHHhhcccCCCCCCCCCcccccchhhHhhhhcCCCCCCCHHHHHHhC
Q 008032 241 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALG 320 (580)
Q Consensus 241 a~~eke~~~sLKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GdlYYEGKe~e~~~~~~kPG~LS~eLR~ALG 320 (580)
++.+.|+.|+|++++|+|||||||.|||||++||||||++|+||.||.||++||||++++...++++||.||.+||+|||
T Consensus 213 ~~~e~ea~msLre~~RervqPkmG~ldvDy~kLhdaFF~~g~kP~L~~fGe~y~e~~n~~~~vk~krPG~IS~eLrealg 292 (429)
T COG5182 213 MMREREAGMSLRERIRERVQPKMGGLDVDYRKLHDAFFSLGPKPYLSKFGEFYEEVDNDYRFVKKKRPGAISAELREALG 292 (429)
T ss_pred hhhhccccCcHHHHHHHhhCccccccchhHHHHHHHHHhcCCCcccccccceeeccchHHHHHhccCCcchHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHhHhcCCCCCCCCCccccCC-CCCC-CCCCccccCCCCCCCCCCCCCCcccccccccccCCCCCCCCCC
Q 008032 321 MPDGAPPPWLINMQRYGPPPSYPHLKIPGLN-APIP-PGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEP 398 (580)
Q Consensus 321 m~~~~pPPWl~~MQr~GpPPSYP~LkIpGLN-apiP-~g~~~GyhpggwGKpPvDe~g~PLyGdvfG~~~~~~~~~~~e~ 398 (580)
|++++|||||++||+||||||||+||||||| ++|| .||.|||.+-||+.|- | ++
T Consensus 293 i~~g~pPPWlf~Mq~~G~PpsYPDlkIpGlNW~~~pL~GdvyG~~~p~~h~~~------------~------------~~ 348 (429)
T COG5182 293 IDSGTPPPWLFNMQKHGMPPSYPDLKIPGLNWAPIPLEGDVYGYQPPGWHEPL------------F------------EV 348 (429)
T ss_pred CCCCCCChHHHhhhhcCCCCCCccccCCCCCCCCcccccccccccCCCcCCcc------------C------------Cc
Confidence 9999999999999999999999999999999 6677 7888888888886632 1 33
Q ss_pred CcccCCCCCCcchhhhhhhh
Q 008032 399 VDKSKHWGDLEEEEEEEEEE 418 (580)
Q Consensus 399 v~k~~~WGel~~eeeeeeee 418 (580)
+.. .+||+|++.++++-++
T Consensus 349 ~~~-~~~gel~~fe~ee~~n 367 (429)
T COG5182 349 GPE-TAEGELLQFEAEEIYN 367 (429)
T ss_pred Ccc-hhhhhhhhccchhhcc
Confidence 444 4999999866554433
No 3
>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs.; GO: 0005634 nucleus
Probab=100.00 E-value=5.4e-73 Score=511.68 Aligned_cols=129 Identities=78% Similarity=1.221 Sum_probs=128.0
Q ss_pred cCCCceEEeecCCCCChHHHHHHhhcCCcccCCccccchhcccccccCCCCCCCCccHHHHHhChHHHHHHHHhhhhhHH
Q 008032 171 CSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKK 250 (580)
Q Consensus 171 v~~PevVE~~D~ta~DP~lLv~lKs~rN~VPVP~HW~~KR~YL~gkrgieK~pf~LP~~I~~TGI~emR~a~~eke~~~s 250 (580)
|.+|||||||||||+||+|||+|||++||||||+|||+||+|||||||||||||+||+||++|||++||+++.++++++|
T Consensus 1 V~~PevVE~~D~~a~DP~lLv~lKs~rNtVPVP~HW~~Kr~YL~gkrg~eKppf~LP~~I~~TgI~emR~~~~e~e~~~s 80 (129)
T PF04037_consen 1 VPRPEVVEWHDVTAPDPRLLVHLKSYRNTVPVPRHWSQKRKYLQGKRGIEKPPFQLPDFIKDTGIEEMRQALPEKEDEKS 80 (129)
T ss_pred CCCCceEEeecCCCCChHHHHHHHhcCCCCCCCcchhhhhhhhcccccccCCCCcCCHHHHHHCcHHHHHHhhcccchhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCccccchHHHHHHhhcccCCCCCCCCCcccccchhh
Q 008032 251 LKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEF 299 (580)
Q Consensus 251 LKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GdlYYEGKe~ 299 (580)
||||||+|||||||+||||||+||||||+|||||.||+|||||||||||
T Consensus 81 lKqk~RervqPKmGkldIDYq~LhdAFFk~qtKP~l~~~Gd~YyEgkef 129 (129)
T PF04037_consen 81 LKQKQRERVQPKMGKLDIDYQKLHDAFFKFQTKPKLTKFGDLYYEGKEF 129 (129)
T ss_pred HHHHHHHHhCcccCcccccHHHHHHHHHhccCCCCcccccceeeccccC
Confidence 9999999999999999999999999999999999999999999999997
No 4
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=99.93 E-value=5.6e-27 Score=186.04 Aligned_cols=54 Identities=63% Similarity=1.281 Sum_probs=51.9
Q ss_pred hhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCCCCCCccccCCCCCCC
Q 008032 303 LREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPP 356 (580)
Q Consensus 303 ~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~LkIpGLNapiP~ 356 (580)
+++++||+||++||+||||++++|||||++||+||+|||||+|+||||||+||.
T Consensus 1 ~~~~kPG~lS~~LR~ALG~~~~~pPPWl~~Mq~~G~PPsYp~l~ipglna~ip~ 54 (54)
T smart00581 1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYPRLKIPGLNAPIPL 54 (54)
T ss_pred CCCccCCcCCHHHHHHcCCCCCCCChHHHHHHHHCCCCCCcccccCCCCCCCCC
Confidence 368999999999999999999999999999999999999999999999999983
No 5
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=99.89 E-value=4.6e-24 Score=166.01 Aligned_cols=48 Identities=69% Similarity=1.304 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCCCCCCccccCCCCC
Q 008032 307 KPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPI 354 (580)
Q Consensus 307 kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~LkIpGLNapi 354 (580)
|||+||++||+||||++++|||||++||++|+|||||+|+|||+||+|
T Consensus 1 kPG~lS~~LR~ALg~~~~~~PPwl~~M~~~G~PP~y~~~ki~g~n~~i 48 (48)
T PF04046_consen 1 KPGKLSDELREALGMQENDPPPWLYRMRRLGYPPGYPDLKIPGLNAPI 48 (48)
T ss_pred CCcccCHHHHHHcCCCCCCCChHHHHHHhcCCCCCCccccccCCCCCC
Confidence 799999999999999999999999999999999999999999999987
No 6
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=98.59 E-value=2.7e-08 Score=106.69 Aligned_cols=51 Identities=39% Similarity=0.793 Sum_probs=44.5
Q ss_pred ccccchhhHhhhhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCCCC
Q 008032 292 LYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYP 343 (580)
Q Consensus 292 lYYEGKe~e~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP 343 (580)
.||---+ ..+..++|||+||..||.|||+.++.||+|+++|.++|.||.|-
T Consensus 167 ry~~~te-q~re~h~KPG~lS~~~R~al~l~~~d~P~~~yRMR~lGYPPg~L 217 (485)
T KOG2673|consen 167 RYYQDTE-QGREDHFKPGVLSGNTRSALGLSPGDPPEWKYRMRRLGYPPGYL 217 (485)
T ss_pred eeeeecc-hhhhcccCCcccchhHHHhhcCCCCCchHHHHHHhhccCCchhh
Confidence 5665333 22678999999999999999999999999999999999999996
No 7
>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=72.07 E-value=3.4 Score=44.74 Aligned_cols=41 Identities=29% Similarity=0.619 Sum_probs=29.6
Q ss_pred hHhcCCCCCCC-----CCccccCCCCCC----CCCCccccCCCCCCCCCCCCCCcccccccccc
Q 008032 333 MQRYGPPPSYP-----HLKIPGLNAPIP----PGASFGYHPGGWGKPPVDEYGRPLYGDVFGIH 387 (580)
Q Consensus 333 MQr~GpPPSYP-----~LkIpGLNapiP----~g~~~GyhpggwGKpPvDe~g~PLyGdvfG~~ 387 (580)
|--+|.||+-| +|+=-|+--..| +|-+||+|| |||||||..
T Consensus 288 realgi~~g~pPPWlf~Mq~~G~PpsYPDlkIpGlNW~~~p--------------L~GdvyG~~ 337 (429)
T COG5182 288 REALGIDSGTPPPWLFNMQKHGMPPSYPDLKIPGLNWAPIP--------------LEGDVYGYQ 337 (429)
T ss_pred HHHhCCCCCCCChHHHhhhhcCCCCCCccccCCCCCCCCcc--------------ccccccccc
Confidence 34456665555 666667766666 588999985 999999974
No 8
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=53.49 E-value=5.5 Score=30.45 Aligned_cols=10 Identities=60% Similarity=1.438 Sum_probs=8.3
Q ss_pred cccCCccccc
Q 008032 199 TVPVPRHWCQ 208 (580)
Q Consensus 199 ~VPVP~HW~~ 208 (580)
+||||+||--
T Consensus 1 vIPV~~hwDp 10 (36)
T TIGR02697 1 VIPVPRHWDP 10 (36)
T ss_pred CcccccccCc
Confidence 5899999964
No 9
>PRK09350 poxB regulator PoxA; Provisional
Probab=43.25 E-value=8.3 Score=40.13 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHhhhcCCCCc----cccchHHHHHHhhcc-cCCCCCCCCCcccccchhhHh-hhhcCCCCCCCHHHH------HHhCCC
Q 008032 255 QRERMQPKMGK----MDIDYQVLHDAFFKY-QTKPKLTSHGDLYHEGKEFEV-KLREMKPGILSHDLK------EALGMP 322 (580)
Q Consensus 255 ~RervqPKmGk----lDIDYqkLhDAFFk~-qtKP~Lt~~GdlYYEGKe~e~-~~~~~kPG~LS~eLR------~ALGm~ 322 (580)
.-..|.|++|+ +=+||=.---+|.+- ...|.++.==|||+.|.|+-. ...-..|..+-.+++ .+.|+.
T Consensus 185 ~~~~ve~~l~~~~p~fi~~yP~~~~~~a~~~~~~~~~~~rfdl~i~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~ 264 (306)
T PRK09350 185 FTFGVEPNIGKEKPTFVYHFPASQAALAKISTEDHRVAERFEVYFKGIELANGFHELTDAREQRQRFEQDNRKRAARGLP 264 (306)
T ss_pred HHHHHHHhcCCCCCEEEEcCccccCccccccCCCCCeeEEEEEEECCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCC
Confidence 34577888875 334665555555443 235667766699999998643 233456666666665 478887
Q ss_pred CCCCchHHHHhHhcCCCCC
Q 008032 323 DGAPPPWLINMQRYGPPPS 341 (580)
Q Consensus 323 ~~~pPPWl~~MQr~GpPPS 341 (580)
+....-|++.+-+||+||+
T Consensus 265 ~~~~d~~~l~a~~~G~pp~ 283 (306)
T PRK09350 265 QQPIDENLIAALEAGLPDC 283 (306)
T ss_pred cccCcHHHHHHHHcCCCCC
Confidence 7666667999999999985
No 10
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=34.32 E-value=16 Score=38.08 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=51.5
Q ss_pred hhcCCCCc----cccchHHHHHHhhcc-cCCCCCCCCCcccccchhhHhh-hhcCCCCCCCHHHH------HHhCCCCCC
Q 008032 258 RMQPKMGK----MDIDYQVLHDAFFKY-QTKPKLTSHGDLYHEGKEFEVK-LREMKPGILSHDLK------EALGMPDGA 325 (580)
Q Consensus 258 rvqPKmGk----lDIDYqkLhDAFFk~-qtKP~Lt~~GdlYYEGKe~e~~-~~~~kPG~LS~eLR------~ALGm~~~~ 325 (580)
.|.|++|. +=+||=.-..+|.+- ...|.++.==|+|+.|.|+-.- -.-..|..+-.++. ++.|+.+..
T Consensus 183 ~ie~~~~~~~p~fi~~yP~~~~~~~~~~~~~~~~~~rfdl~~~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~ 262 (304)
T TIGR00462 183 KVEPHLGFGRPTFLYDYPASQAALARISPDDPRVAERFELYIKGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYP 262 (304)
T ss_pred HHHHhcCCCCCEEEEcCccccCcCccccCCCCCeeEEEEEEECCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcch
Confidence 45555542 334666555555442 2356677656899999875321 12234444444443 357887766
Q ss_pred CchHHHHhHhcCCCCC
Q 008032 326 PPPWLINMQRYGPPPS 341 (580)
Q Consensus 326 pPPWl~~MQr~GpPPS 341 (580)
..-|++.+-+||+||+
T Consensus 263 ~d~~yl~~~~~G~pP~ 278 (304)
T TIGR00462 263 LDERFLAALEAGLPEC 278 (304)
T ss_pred hhHHHHHHHHcCCCCC
Confidence 6679999999999985
No 11
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=33.02 E-value=32 Score=38.82 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=42.0
Q ss_pred hhhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCCCCC---CccccCCCC
Q 008032 302 KLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPH---LKIPGLNAP 353 (580)
Q Consensus 302 ~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~---LkIpGLNap 353 (580)
....+.+|.+| ++-++|+-.+.+.||..++||+.|-|+-|-+ +.-+|...-
T Consensus 43 ~~~r~esg~i~-~qqd~l~~te~a~~~fr~~~qe~~t~s~wl~~~~~ek~gedl~ 96 (485)
T KOG2673|consen 43 RRGRFESGVIS-EQQDLLGVTEKAFPPFRYRMQELGTPSFWLKNAELEKSGEDLY 96 (485)
T ss_pred hhccccccccc-hHHHHhhcccccccchhhhHHhhcCchhhhhhcccccChhhhc
Confidence 55788999999 8899999999999999999999999998873 334444433
No 12
>PLN02850 aspartate-tRNA ligase
Probab=29.13 E-value=16 Score=41.25 Aligned_cols=56 Identities=29% Similarity=0.468 Sum_probs=38.3
Q ss_pred CCCCCCCcccccchhhHh-hhhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCC
Q 008032 284 PKLTSHGDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341 (580)
Q Consensus 284 P~Lt~~GdlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPS 341 (580)
|.++.==|||+.|-|.-. ..+...|-.|-..+++ .||++... -|++.+-+||+||.
T Consensus 439 ~~~~~~fDl~i~G~EI~~G~qr~~d~~~l~~r~~~-~g~d~~~~-~~Yl~a~~~G~pPh 495 (530)
T PLN02850 439 PKYSNSFDVFIRGEEIISGAQRVHDPELLEKRAEE-CGIDVKTI-STYIDSFRYGAPPH 495 (530)
T ss_pred CCeEEEEEEEeCCEEEeccceecCCHHHHHHHHHH-cCCChHHH-HHHHHHHHcCCCCC
Confidence 334444478888876532 2244555566666654 89988766 99999999999985
No 13
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=27.11 E-value=17 Score=40.04 Aligned_cols=74 Identities=23% Similarity=0.400 Sum_probs=48.3
Q ss_pred cccchHHHHHHhhc-ccCCCCCCCCCcccccc-hhhHh-hhhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCC
Q 008032 266 MDIDYQVLHDAFFK-YQTKPKLTSHGDLYHEG-KEFEV-KLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341 (580)
Q Consensus 266 lDIDYqkLhDAFFk-~qtKP~Lt~~GdlYYEG-Ke~e~-~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPS 341 (580)
+=+||=...-.|+. ....|.++.-=|+|+-| .|+-. ..+...+-.|-..++ +.||.+. .-.|++.+-+||+||.
T Consensus 342 fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~-~~g~d~~-~~~~Yl~~~~~G~pPh 418 (453)
T TIGR00457 342 FVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMK-EMGLDTD-ALNWYLDLRKYGSVPH 418 (453)
T ss_pred EEECCCcccChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHH-HcCCCHH-HHHHHHHHHHcCCCCC
Confidence 33466666666663 33667777777899988 36532 234455555555554 5687765 4579999999999983
No 14
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=25.91 E-value=35 Score=18.75 Aligned_cols=7 Identities=71% Similarity=1.896 Sum_probs=4.5
Q ss_pred cCCCCCC
Q 008032 363 HPGGWGK 369 (580)
Q Consensus 363 hpggwGK 369 (580)
|-||||.
T Consensus 2 hgG~Wgq 8 (8)
T PF03991_consen 2 HGGGWGQ 8 (8)
T ss_pred CCCcCCC
Confidence 5577773
No 15
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=25.82 E-value=24 Score=36.36 Aligned_cols=41 Identities=37% Similarity=0.455 Sum_probs=30.8
Q ss_pred HHHhhcCCccc------------CCccccchhccccc------------------------ccCCCCCCCCccHHHHHhC
Q 008032 191 VFLKAYRNTVP------------VPRHWCQKRKFLQG------------------------KRGIEKQPFQLPDFIAATG 234 (580)
Q Consensus 191 v~lKs~rN~VP------------VP~HW~~KR~YL~g------------------------krgieK~pf~LP~~I~~TG 234 (580)
+.+|++|+++| .++||+..+-||-+ .|.|+.|||+ |.+||
T Consensus 8 ~r~~t~r~Iipgea~~~~~e~~~P~r~th~w~v~v~~~g~E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFe----I~EtG 83 (225)
T COG5033 8 ERLKTQRVIIPGEAKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFE----IKETG 83 (225)
T ss_pred EeeeeeceeccCccccCCccccCCchhhEEEEEEEeCCCCcchhhhhheeeEEeccccCCCcccccCCCcE----EEecc
Confidence 35677888888 35899998888865 4788888886 46677
Q ss_pred h
Q 008032 235 I 235 (580)
Q Consensus 235 I 235 (580)
-
T Consensus 84 W 84 (225)
T COG5033 84 W 84 (225)
T ss_pred c
Confidence 5
No 16
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=24.37 E-value=29 Score=35.66 Aligned_cols=73 Identities=22% Similarity=0.358 Sum_probs=47.1
Q ss_pred cchHHHHHHhhccc--CCCCCCCCCcccccchhhHh-hhhcCCCCCCCHHHHHHhCCCCC---CCchHHHHhHhcCCCCC
Q 008032 268 IDYQVLHDAFFKYQ--TKPKLTSHGDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDG---APPPWLINMQRYGPPPS 341 (580)
Q Consensus 268 IDYqkLhDAFFk~q--tKP~Lt~~GdlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~---~pPPWl~~MQr~GpPPS 341 (580)
+||-..--+||... ..|.++.-=|||+.|.|.-. ..+...|-.|-..+++. |+.+. .+=.|++.+-+||+||.
T Consensus 160 ~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~~~~~~-~~~~~~~~~~~~~yl~a~~~G~pp~ 238 (269)
T cd00669 160 TDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQ-GINKEAGMEYFEFYLKALEYGLPPH 238 (269)
T ss_pred ECCCcccCCCCCCcCCCCCCeEEEEEEeeCCEEEeeCchhcCCHHHHHHHHHHh-CcChhhccccHHHHHHHHHcCCCCC
Confidence 36655545555532 35677766789999987532 23445555555555554 55553 37789999999999884
No 17
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=24.01 E-value=19 Score=37.82 Aligned_cols=72 Identities=25% Similarity=0.433 Sum_probs=48.3
Q ss_pred cchHHHHHHhhcc--cCCCCCCCCCcccccc-hhhHh-hhhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCC
Q 008032 268 IDYQVLHDAFFKY--QTKPKLTSHGDLYHEG-KEFEV-KLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341 (580)
Q Consensus 268 IDYqkLhDAFFk~--qtKP~Lt~~GdlYYEG-Ke~e~-~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPS 341 (580)
+||=.-.-+|+.- ...|.++.-=|||+.| .|+-. ..+...|-.|-..+++ .|+++... -|++.+-++|+||.
T Consensus 216 ~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~-~g~~~~~~-~~yl~a~~~G~pp~ 291 (322)
T cd00776 216 TDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKE-HGLDPESF-EWYLDLRKYGMPPH 291 (322)
T ss_pred ECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHH-cCCChHHH-HHHHHHHHCCCCCC
Confidence 4666666666442 2356777778999999 87632 2234455555555554 68776544 89999999999984
No 18
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=21.37 E-value=33 Score=39.12 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCCCCCCcccccchhhHh-hhhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCC
Q 008032 283 KPKLTSHGDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341 (580)
Q Consensus 283 KP~Lt~~GdlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPS 341 (580)
.|.++.-=|||+.|-|.-. ..+...|-.|-..++ +.||++.. =-|++.+-+||+||.
T Consensus 458 dp~~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~-~~G~d~~~-~~~Yl~a~~~G~PPh 515 (550)
T PTZ00401 458 DERFTNSYDMFIRGEEISSGAQRIHDPDLLLARAK-MLNVDLTP-IKEYVDSFRLGAWPH 515 (550)
T ss_pred CCCEEEEEEEEeCCEEEccchhhcCCHHHHHHHHH-HcCCCchh-hHHHHHHHHcCCCCC
Confidence 4555555589999977543 234566667777775 47988753 489999999999984
No 19
>PF08175 SspO: Small acid-soluble spore protein O family; InterPro: IPR012613 This family consists of the small acid-soluble spore proteins (SASP) O type (sspO). SspO (originally cotK) are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspO is the first gene in a likely operon with sspP and transcription of this gene is primarily by RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspO causes the loss of the SspO from the forespore but had no discernible effect on sporulation, spore properties or spore germination [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=20.02 E-value=64 Score=26.57 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=19.2
Q ss_pred CCccccCCCCCCCCCCcc----ccCCCCCCCCCC
Q 008032 344 HLKIPGLNAPIPPGASFG----YHPGGWGKPPVD 373 (580)
Q Consensus 344 ~LkIpGLNapiP~g~~~G----yhpggwGKpPvD 373 (580)
+--|||+|++-..|---| |+.. .-|||.
T Consensus 6 nH~~pGmn~ak~qg~~~g~~r~y~ee--~~~plt 37 (51)
T PF08175_consen 6 NHPIPGMNRAKSQGKGAGLHRTYNEE--ANEPLT 37 (51)
T ss_pred cCcCcCcccccccccCcccccccccc--cccccc
Confidence 345899999998887777 5444 445543
Done!