Query 008032
Match_columns 580
No_of_seqs 187 out of 231
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oei_A Major prion protein; oc 57.2 7 0.00024 26.9 2.4 19 352-370 5-24 (26)
2 1eov_A ASPRS, aspartyl-tRNA sy 30.8 7.1 0.00024 41.7 -1.3 73 268-341 376-452 (487)
3 3a5y_A GENX, putative lysyl-tR 24.3 50 0.0017 33.8 3.7 85 257-341 218-314 (345)
4 2e8g_A Hypothetical protein PH 20.2 21 0.0007 35.6 -0.2 31 179-210 1-37 (241)
5 1wyd_A Hypothetical aspartyl-t 16.2 13 0.00044 39.2 -2.9 75 265-341 317-394 (429)
6 2zk9_X Protein-glutaminase; de 14.0 26 0.0009 33.7 -1.1 35 329-364 49-84 (185)
7 2l66_A SSO7C4, transcriptional 12.4 1.1E+02 0.0037 23.0 2.1 16 310-325 15-30 (53)
8 1l0w_A Aspartyl-tRNA synthetas 12.2 34 0.0012 37.5 -1.0 58 283-341 459-522 (580)
9 1yfb_A Transition state regula 11.8 1E+02 0.0035 24.2 1.9 16 310-325 25-40 (59)
10 1n9w_A Aspartyl-tRNA synthetas 11.8 20 0.00068 37.6 -2.9 71 268-340 315-386 (422)
No 1
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=57.19 E-value=7 Score=26.89 Aligned_cols=19 Identities=47% Similarity=1.102 Sum_probs=11.1
Q ss_pred CCCCCCCCccc-cCCCCCCC
Q 008032 352 APIPPGASFGY-HPGGWGKP 370 (580)
Q Consensus 352 apiP~g~~~Gy-hpggwGKp 370 (580)
|--|-|..||- |.++||.|
T Consensus 5 wgqp~gg~wgqphgg~wgqp 24 (26)
T 1oei_A 5 WGQPHGGGWGQPHGGGWGQP 24 (26)
T ss_dssp SSSTTSSSSTTTCSSSSSCC
T ss_pred cCCccCCcCCCCCCCcCCCC
Confidence 44555666663 55666665
No 2
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=30.80 E-value=7.1 Score=41.73 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=51.0
Q ss_pred cchHHHHHHhhc-c-cCCCCCCCCCcccccchhhHh-hhhcCCCCCCCHHHHHHhCCCCC-CCchHHHHhHhcCCCCC
Q 008032 268 IDYQVLHDAFFK-Y-QTKPKLTSHGDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDG-APPPWLINMQRYGPPPS 341 (580)
Q Consensus 268 IDYqkLhDAFFk-~-qtKP~Lt~~GdlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~-~pPPWl~~MQr~GpPPS 341 (580)
.||-..|.+||. - ...|.++.-=|||..|.|.-. ..+...|-.+-..+ +++|+++. ..--|++..-+||+||.
T Consensus 376 ~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~-~~~g~~~~~~~~~~yl~al~yG~PPh 452 (487)
T 1eov_A 376 DKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERM-KAHGLSPEDPGLKDYCDGFSYGCPPH 452 (487)
T ss_dssp ECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHH-HHTTCCTTSTTTHHHHHHHTTCCCCE
T ss_pred ECCccccChhhcCcCCCCCCeEEEEEEEeCCEEEEeeEEecCCHHHHHHHH-HHcCCChhhhhHHHHHHHHhcCCCCC
Confidence 488888888873 2 346788888899999987532 12333444444444 35798876 34579999999999984
No 3
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=24.35 E-value=50 Score=33.76 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=54.0
Q ss_pred hhhcCCCCc----cccchHHHHHHhhccc-CCCCCCCCCcccccchhhHhh-hhcCCCCCC------CHHHHHHhCCCCC
Q 008032 257 ERMQPKMGK----MDIDYQVLHDAFFKYQ-TKPKLTSHGDLYHEGKEFEVK-LREMKPGIL------SHDLKEALGMPDG 324 (580)
Q Consensus 257 ervqPKmGk----lDIDYqkLhDAFFk~q-tKP~Lt~~GdlYYEGKe~e~~-~~~~kPG~L------S~eLR~ALGm~~~ 324 (580)
+.|.|++|. +=+||=..--+|-+.- ..|.++.-=|||..|.|.-.- .+-..|-.+ -.+.|+++|+.+.
T Consensus 218 ~~ve~~lg~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~ 297 (345)
T 3a5y_A 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQH 297 (345)
T ss_dssp HHTGGGSSSSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChh
Confidence 567888873 3456665555664432 356677677999999864210 001111111 2356677899888
Q ss_pred CCchHHHHhHhcCCCCC
Q 008032 325 APPPWLINMQRYGPPPS 341 (580)
Q Consensus 325 ~pPPWl~~MQr~GpPPS 341 (580)
...-|++..-+||.||.
T Consensus 298 ~~d~~yl~al~yG~PPh 314 (345)
T 3a5y_A 298 PIDQNLIEALKVGMPDC 314 (345)
T ss_dssp CCCHHHHHHHHHCCCSE
T ss_pred hHHHHHHHHHhcCCCCC
Confidence 77789999999999984
No 4
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=20.20 E-value=21 Score=35.62 Aligned_cols=31 Identities=39% Similarity=0.719 Sum_probs=23.0
Q ss_pred eecCCCCChHHHHHHhh---cCCcc---cCCccccchh
Q 008032 179 VWDATASDPKLLVFLKA---YRNTV---PVPRHWCQKR 210 (580)
Q Consensus 179 ~~D~ta~DP~lLv~lKs---~rN~V---PVP~HW~~KR 210 (580)
+|| ||.||+|||.-|+ .+++| -++.||.-|+
T Consensus 1 ~~d-t~~d~r~~~ae~~~~~~~~~~~~~~~~~~~~kk~ 37 (241)
T 2e8g_A 1 MWD-TSKDYRLLVAEKSVELFIRTIEGAKFRGQWDKKR 37 (241)
T ss_dssp CCC-GGGCHHHHHHHHHHHHHHHHHHTSCCCTTSCHHH
T ss_pred CCC-cccchHHHHHHHHHHHHHHHHhccCccccccHHH
Confidence 354 6899999998776 34555 8899998553
No 5
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=16.19 E-value=13 Score=39.18 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=49.8
Q ss_pred ccccchHHHHHHhhcc--cCCCCCCCCCcccccchhhHh-hhhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCC
Q 008032 265 KMDIDYQVLHDAFFKY--QTKPKLTSHGDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341 (580)
Q Consensus 265 klDIDYqkLhDAFFk~--qtKP~Lt~~GdlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPS 341 (580)
.+=+||=..+.+|+.- ...|.++.-=|||..|.|+-. ..+...|-.+-..++ ++|+++.. --|++..-+||.||.
T Consensus 317 ~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~-~~g~~~~~-~~~yl~al~yG~PP~ 394 (429)
T 1wyd_A 317 YFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALK-KKGLKPES-FEFFLKWFDYGMPPH 394 (429)
T ss_dssp EEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGG-GHHHHGGGGSCCCCE
T ss_pred EEEecCChhhChhhCCcCCCCCCeEEEEEEEECCEEEEeCeeeeCCHHHHHHHHH-HcCCChHH-HHHHHHHHhcCCCCc
Confidence 3556777777777643 246778888899999997632 123344444444444 46887654 489999999999863
No 6
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=14.02 E-value=26 Score=33.73 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=21.8
Q ss_pred HHHHhHhcCCCCCCCCCccccCCCCCCCCC-CccccC
Q 008032 329 WLINMQRYGPPPSYPHLKIPGLNAPIPPGA-SFGYHP 364 (580)
Q Consensus 329 Wl~~MQr~GpPPSYP~LkIpGLNapiP~g~-~~Gyhp 364 (580)
|...|+++|.+|.=- +.+--|-+|+|+|+ .||||-
T Consensus 49 m~~~l~~~Gi~p~Ki-Fv~g~L~a~t~~GtVsW~YHV 84 (185)
T 2zk9_X 49 MRQILMNNGYDCEKQ-FVYGNLKASTGTCCVAWSYHV 84 (185)
T ss_dssp HHHHHHHTTBCCEEE-EEEEEEEEECSSCEEEEEEEE
T ss_pred HHHHHHHcCCChhhe-EEEeeeeecCCCceeceeeee
Confidence 667789999886411 11112445567776 799994
No 7
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=12.40 E-value=1.1e+02 Score=23.01 Aligned_cols=16 Identities=6% Similarity=0.418 Sum_probs=14.1
Q ss_pred CCCHHHHHHhCCCCCC
Q 008032 310 ILSHDLKEALGMPDGA 325 (580)
Q Consensus 310 ~LS~eLR~ALGm~~~~ 325 (580)
.|..++|++|||.+|.
T Consensus 15 ~IPk~ir~~lgi~~Gd 30 (53)
T 2l66_A 15 TIPAKVRQKFQIKEGD 30 (53)
T ss_dssp CCCHHHHHHSCCCTTC
T ss_pred EeCHHHHHHcCcCCCC
Confidence 5789999999999885
No 8
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=12.20 E-value=34 Score=37.50 Aligned_cols=58 Identities=22% Similarity=0.464 Sum_probs=38.4
Q ss_pred CC-CC-CCCCcccccchhhHh-hhhcCCCCCCCHHHHHHhCCCCCCCch---HHHHhHhcCCCCC
Q 008032 283 KP-KL-TSHGDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDGAPPP---WLINMQRYGPPPS 341 (580)
Q Consensus 283 KP-~L-t~~GdlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~~pPP---Wl~~MQr~GpPPS 341 (580)
.| .+ +..=|||..|.|.-. ..+...|-.+-..++ ++||++...-. |++..-+||.||.
T Consensus 459 dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~-~~g~~~ee~~~~~~~~L~al~yG~PPh 522 (580)
T 1l0w_A 459 DPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFR-LLGIGEEEQREKFGFFLEALEYGAPPH 522 (580)
T ss_dssp CGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HHTCCTTTHHHHTHHHHHHTTBTCCCE
T ss_pred CccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHH-HcCCChhHHHhHHHHHHHHHhcCCCCC
Confidence 36 35 677799999987632 223444444444444 57887765333 9999999999984
No 9
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=11.83 E-value=1e+02 Score=24.22 Aligned_cols=16 Identities=19% Similarity=0.609 Sum_probs=0.0
Q ss_pred CCCHHHHHHhCCCCCC
Q 008032 310 ILSHDLKEALGMPDGA 325 (580)
Q Consensus 310 ~LS~eLR~ALGm~~~~ 325 (580)
.|..++|++|||.+|.
T Consensus 25 tIPkeiR~~Lgi~~Gd 40 (59)
T 1yfb_A 25 VIPIELRRTLGIAEKD 40 (59)
T ss_dssp ECCHHHHHHTTCCTTC
T ss_pred EeCHHHHHHcCCCCCC
No 10
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=11.80 E-value=20 Score=37.64 Aligned_cols=71 Identities=27% Similarity=0.334 Sum_probs=0.0
Q ss_pred cchHHHHHHhhcccCCCCCCCCCcccccchhhHh-hhhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCC
Q 008032 268 IDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPP 340 (580)
Q Consensus 268 IDYqkLhDAFFk~qtKP~Lt~~GdlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPP 340 (580)
+||=..+.+|++-...=.++.-=|||..|.|.-. ..+...|-.+-..+++. |+++... -|++..-+||+||
T Consensus 315 ~d~P~~~~pf~~~~~~d~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~-g~~~~~~-~~yl~a~~yG~PP 386 (422)
T 1n9w_A 315 TRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAK-GMDPEAF-HGYLEVFKYGMPP 386 (422)
T ss_dssp ECCBGGGSCTTBCBCTTSBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHT-TCCGGGG-HHHHGGGGBCCCS
T ss_pred ECCChhhCcCcCCCCCCCEEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHc-CCCHHHH-HHHHHHHhcCCCC
Done!