Query 008032
Match_columns 580
No_of_seqs 187 out of 231
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 16:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008032.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008032hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n9wa2 d.104.1.1 (A:111-414) 18.9 4.5 0.00032 37.4 -2.9 74 266-341 203-277 (304)
2 d1p90a_ c.55.5.2 (A:) NafY cor 17.9 23 0.0016 28.4 1.7 10 323-332 112-121 (123)
3 d1rw0a_ d.194.1.2 (A:) Hypothe 16.0 30 0.0022 31.4 2.2 31 344-376 3-35 (243)
4 d1l0wa3 d.104.1.1 (A:105-294,A 13.6 13 0.00097 35.2 -1.1 51 290-341 244-298 (356)
5 d1eova2 d.104.1.1 (A:205-557) 13.5 25 0.0018 32.8 0.9 72 269-341 243-318 (353)
6 d1gsoa1 b.84.2.1 (A:328-426) G 11.4 48 0.0035 26.3 1.9 31 335-366 11-42 (99)
7 d1yfba1 b.129.1.3 (A:3-53) Tra 11.2 45 0.0033 24.4 1.5 17 310-326 17-33 (51)
8 d2sqca2 a.102.4.2 (A:37-307) S 10.7 57 0.0042 29.4 2.4 19 309-334 18-36 (271)
9 d1uwda_ d.52.8.2 (A:) Hypothet 9.9 48 0.0035 26.4 1.4 16 306-321 87-102 (102)
10 d2hmfa2 d.58.18.10 (A:404-470) 7.5 65 0.0048 23.6 1.2 8 271-278 58-65 (67)
No 1
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=18.85 E-value=4.5 Score=37.37 Aligned_cols=74 Identities=27% Similarity=0.317 Sum_probs=45.2
Q ss_pred cccchHHHHHHhhcccCCCCCCCCCcccccchhhHhh-hhcCCCCCCCHHHHHHhCCCCCCCchHHHHhHhcCCCCC
Q 008032 266 MDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVK-LREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341 (580)
Q Consensus 266 lDIDYqkLhDAFFk~qtKP~Lt~~GdlYYEGKe~e~~-~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPS 341 (580)
+-+||-+-.-+|++.-..+..+.-=|||+.|.|+-.- .+...|=.+...++ +.|+.+.. --|++++-++|+||.
T Consensus 203 fi~~~P~~~~p~~~~~~~~~~a~rfel~~~G~El~nG~~e~~d~~~l~~r~~-~~~~~~e~-~~~yl~al~~G~PP~ 277 (304)
T d1n9wa2 203 FVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLK-AKGMDPEA-FHGYLEVFKYGMPPH 277 (304)
T ss_dssp EEECCBGGGSCTTBCBCTTSBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGG-GHHHHGGGGBCCCSE
T ss_pred EEeCChhhhCchhhcccccceeehhccccCcEEEeccccccCCHHHHHHHHH-HcCCCHHH-HHHHHHHHhcCCCCC
Confidence 4457777667777655555555445999999986211 11223333344443 34665433 369999999999994
No 2
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=17.86 E-value=23 Score=28.43 Aligned_cols=10 Identities=60% Similarity=1.610 Sum_probs=8.2
Q ss_pred CCCCchHHHH
Q 008032 323 DGAPPPWLIN 332 (580)
Q Consensus 323 ~~~pPPWl~~ 332 (580)
-+.|||||-+
T Consensus 112 ~~~~p~~l~k 121 (123)
T d1p90a_ 112 AGSPPPWLAK 121 (123)
T ss_dssp HSCCCHHHHH
T ss_pred CCCCChHHhh
Confidence 5789999975
No 3
>d1rw0a_ d.194.1.2 (A:) Hypothetical protein yfiH {Salmonella typhi [TaxId: 90370]}
Probab=16.01 E-value=30 Score=31.40 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=23.8
Q ss_pred CCccccCCCCCCCCCCccccC--CCCCCCCCCCCC
Q 008032 344 HLKIPGLNAPIPPGASFGYHP--GGWGKPPVDEYG 376 (580)
Q Consensus 344 ~LkIpGLNapiP~g~~~Gyhp--ggwGKpPvDe~g 376 (580)
+|-|| |||.|+|-..+|-+ ||--++|.+..|
T Consensus 3 ~~i~p--~W~~p~~v~~~fTtR~GGvS~~~y~slN 35 (243)
T d1rw0a_ 3 ALIVP--QWPLPKGVAACSSTRIGGVSLSPYDSLN 35 (243)
T ss_dssp TEECC--CSCCCTTEEEEEECSCSCCCCTTSCSCC
T ss_pred ccccC--CCCCCCCCEEEEEECCCCccCCcccccc
Confidence 57788 99999999999977 454477776554
No 4
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=13.57 E-value=13 Score=35.23 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=30.9
Q ss_pred CcccccchhhHh-hhhcCCCCCCCHHHHHHhCCCCCCC---chHHHHhHhcCCCCC
Q 008032 290 GDLYHEGKEFEV-KLREMKPGILSHDLKEALGMPDGAP---PPWLINMQRYGPPPS 341 (580)
Q Consensus 290 GdlYYEGKe~e~-~~~~~kPG~LS~eLR~ALGm~~~~p---PPWl~~MQr~GpPPS 341 (580)
=|+|+.|.|.-. ..+...|-.+-..+ ++.|+.+... --|++.+-+||+||.
T Consensus 244 FdL~~~G~ElanG~~r~~d~~~~~~r~-~~~~~~~~~~~~~~~~yl~a~~~G~PP~ 298 (356)
T d1l0wa3 244 YDLVLNGVEVGGGSIRIHDPRLQARVF-RLLGIGEEEQREKFGFFLEALEYGAPPH 298 (356)
T ss_dssp EEEEETTEEEEEEEEBCCCHHHHHHHH-HHHTCCTTTHHHHTHHHHHHTTBTCCCE
T ss_pred eecccCCEEeeccEEEeCcHHHHHHHH-HHHcCCchhhHHHHHHHHHHhhCCCCCc
Confidence 489999987632 11222333333333 3567766532 359999999999984
No 5
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.47 E-value=25 Score=32.81 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=41.2
Q ss_pred chHHHHHHhhcc--cCCCCCCCCCcccccchhhHhh-hhcCCCCCCCHHHHHHhCCCCCC-CchHHHHhHhcCCCCC
Q 008032 269 DYQVLHDAFFKY--QTKPKLTSHGDLYHEGKEFEVK-LREMKPGILSHDLKEALGMPDGA-PPPWLINMQRYGPPPS 341 (580)
Q Consensus 269 DYqkLhDAFFk~--qtKP~Lt~~GdlYYEGKe~e~~-~~~~kPG~LS~eLR~ALGm~~~~-pPPWl~~MQr~GpPPS 341 (580)
||=.-.-+|+.. ...|.++..=|+|+.|.|+-.- .+...|=.+-..+ ++.|+.+.. .--|++.+-+||+||.
T Consensus 243 ~~P~~~~p~~~~~~~~~~~~a~rfeL~~~G~El~nG~~e~~d~~~~~~r~-~~~~~~~~~~~~~~yl~al~~G~PP~ 318 (353)
T d1eova2 243 KFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERM-KAHGLSPEDPGLKDYCDGFSYGCPPH 318 (353)
T ss_dssp CCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHH-HHTTCCTTSTTTHHHHHHHTTCCCCE
T ss_pred CCcHHHhhhhhCCChhhhhhhhceeeeeeceEEcceecccCCHHHHHHHH-HHcCCChhhhHHHHHHHHhHcCCCCC
Confidence 344433455543 2456677777899999986321 1111222222222 345776543 2359999999999983
No 6
>d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]}
Probab=11.39 E-value=48 Score=26.30 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=22.8
Q ss_pred hcCCCCCCC-CCccccCCCCCCCCCCccccCCC
Q 008032 335 RYGPPPSYP-HLKIPGLNAPIPPGASFGYHPGG 366 (580)
Q Consensus 335 r~GpPPSYP-~LkIpGLNapiP~g~~~Gyhpgg 366 (580)
.-|.|=+|+ +..|.||+..-..++.+ ||.|-
T Consensus 11 s~GYP~~~~kg~~I~~~~~~~~~~~~i-fhagt 42 (99)
T d1gsoa1 11 AGGYPGDYRTGDVIHGLPLEEVAGGKV-FHAGT 42 (99)
T ss_dssp ETTTTSCCCCCCBCBCCCSSCCTTEEE-EESSE
T ss_pred cCCCCCCccCCCcccccccccccceEE-eeeee
Confidence 458888887 77899998766666654 77764
No 7
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.22 E-value=45 Score=24.44 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCCHHHHHHhCCCCCCC
Q 008032 310 ILSHDLKEALGMPDGAP 326 (580)
Q Consensus 310 ~LS~eLR~ALGm~~~~p 326 (580)
+|-.|||.+|||.++.|
T Consensus 17 ViPkElR~~L~I~~~d~ 33 (51)
T d1yfba1 17 VIPIELRRTLGIAEKDA 33 (51)
T ss_dssp ECCHHHHHHTTCCTTCE
T ss_pred EccHHHHHhcCCCCCCc
Confidence 47789999999999875
No 8
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}
Probab=10.72 E-value=57 Score=29.42 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=11.7
Q ss_pred CCCCHHHHHHhCCCCCCCchHHHHhH
Q 008032 309 GILSHDLKEALGMPDGAPPPWLINMQ 334 (580)
Q Consensus 309 G~LS~eLR~ALGm~~~~pPPWl~~MQ 334 (580)
|.+++++++.+. -||.+.|
T Consensus 18 g~~~~~~~~~~~-------~~l~~~Q 36 (271)
T d2sqca2 18 DRVDRDRMEKIR-------RYLLHEQ 36 (271)
T ss_dssp TCCCHHHHHHHH-------HHHHHHS
T ss_pred CCCCHHHHHHHH-------HHHHHcc
Confidence 445555444433 6999998
No 9
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=9.92 E-value=48 Score=26.42 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=13.7
Q ss_pred CCCCCCCHHHHHHhCC
Q 008032 306 MKPGILSHDLKEALGM 321 (580)
Q Consensus 306 ~kPG~LS~eLR~ALGm 321 (580)
..|..+|++.|++|||
T Consensus 87 W~~~~~s~~~r~~lG~ 102 (102)
T d1uwda_ 87 WTPERMSPELREKFGV 102 (102)
T ss_dssp CCGGGSCHHHHHHHTC
T ss_pred CChHHCCHHHHHHcCC
Confidence 4677899999999997
No 10
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=7.55 E-value=65 Score=23.61 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=0.0
Q ss_pred HHHHHHhh
Q 008032 271 QVLHDAFF 278 (580)
Q Consensus 271 qkLhDAFF 278 (580)
+.||++||
T Consensus 58 ~~Lh~~F~ 65 (67)
T d2hmfa2 58 RKLHEKFI 65 (67)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Done!