Query 008033
Match_columns 580
No_of_seqs 303 out of 1404
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 18:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 5.3E-37 1.1E-41 320.1 19.0 225 237-467 25-260 (317)
2 KOG1470 Phosphatidylinositol t 100.0 8.1E-37 1.8E-41 313.7 15.7 199 251-466 45-245 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 2.6E-28 5.6E-33 227.9 10.5 151 302-463 7-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 1E-25 2.2E-30 210.2 12.8 145 308-465 14-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.6E-23 3.4E-28 192.7 12.1 146 305-463 12-157 (157)
6 PF13897 GOLD_2: Golgi-dynamic 99.9 2.7E-21 6E-26 174.6 10.4 92 482-574 1-134 (136)
7 KOG3878 Protein involved in ma 99.5 1.7E-14 3.6E-19 146.6 6.1 95 479-574 323-466 (469)
8 PF13716 CRAL_TRIO_2: Divergen 99.5 5.3E-14 1.1E-18 131.2 5.2 142 304-467 4-147 (149)
9 PF03765 CRAL_TRIO_N: CRAL/TRI 98.3 7.9E-07 1.7E-11 69.5 3.8 31 249-279 25-55 (55)
10 KOG4406 CDC42 Rho GTPase-activ 98.1 8.8E-06 1.9E-10 86.5 8.7 132 304-456 83-215 (467)
11 KOG3287 Membrane trafficking p 97.5 0.0011 2.3E-08 65.4 11.7 101 456-573 18-126 (236)
12 KOG1693 emp24/gp25L/p24 family 95.1 0.13 2.8E-06 50.4 9.1 72 492-575 38-116 (209)
13 KOG1692 Putative cargo transpo 94.8 0.11 2.4E-06 50.6 7.7 56 510-576 56-113 (201)
14 PF01105 EMP24_GP25L: emp24/gp 84.9 0.28 6E-06 46.3 0.0 89 480-576 4-99 (183)
15 smart00110 C1Q Complement comp 67.2 14 0.0003 34.3 5.9 25 536-561 35-59 (135)
16 PF09394 Inhibitor_I42: Chagas 67.0 37 0.0008 28.6 8.2 86 480-575 1-92 (92)
17 KOG1534 Putative transcription 56.5 15 0.00033 37.1 4.3 106 347-456 75-194 (273)
18 PF14555 UBA_4: UBA-like domai 48.1 25 0.00054 25.9 3.3 24 254-277 14-37 (43)
19 PF00386 C1q: C1q domain; Int 39.6 23 0.00051 31.8 2.5 33 540-573 33-65 (127)
20 PF02845 CUE: CUE domain; Int 38.4 58 0.0013 23.7 4.0 26 253-278 15-40 (42)
21 PF14213 DUF4325: Domain of un 37.9 64 0.0014 26.5 4.7 47 370-420 20-68 (74)
22 smart00546 CUE Domain that may 31.6 77 0.0017 23.1 3.7 25 253-277 16-40 (43)
23 TIGR02364 dha_pts dihydroxyace 27.7 1.9E+02 0.0041 26.5 6.4 50 366-426 60-109 (125)
24 smart00165 UBA Ubiquitin assoc 23.9 1.1E+02 0.0025 21.2 3.4 23 254-276 14-36 (37)
25 cd00194 UBA Ubiquitin Associat 23.0 1.2E+02 0.0027 21.1 3.4 24 254-277 14-37 (38)
26 PF07462 MSP1_C: Merozoite sur 22.9 76 0.0017 36.0 3.3 28 256-286 390-417 (574)
27 PF04838 Baculo_LEF5: Baculovi 22.4 50 0.0011 31.4 1.5 48 389-437 17-68 (159)
28 PRK14484 phosphotransferase ma 21.6 2.1E+02 0.0046 26.3 5.4 48 366-426 58-105 (124)
29 PF00627 UBA: UBA/TS-N domain; 21.6 1.4E+02 0.003 21.0 3.4 23 254-276 15-37 (37)
30 PF11964 SpoIIAA-like: SpoIIAA 20.5 2.3E+02 0.005 24.1 5.4 64 367-439 32-96 (109)
31 TIGR03769 P_ac_wall_RPT actino 20.2 1E+02 0.0022 22.8 2.5 17 545-561 5-21 (41)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=5.3e-37 Score=320.14 Aligned_cols=225 Identities=32% Similarity=0.500 Sum_probs=188.4
Q ss_pred ChhHHH-hhcCCCCCC-CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCCcccc-cccccce--eEeeeccCC
Q 008033 237 PPEKVF-IWGIPLLGD-DRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEED-LGNDLDK--VVFMHGVDK 311 (580)
Q Consensus 237 ~~~~~~-~W~~PlL~~-~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~iD~i~~~~-l~~el~k--~~~l~G~Dk 311 (580)
.+..++ +|..|+|+. ..||.+||||||||+||+++|.+||.+++.||.++++|.+.... ...++.+ ...++|.|+
T Consensus 25 ~i~~lr~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~ 104 (317)
T KOG1471|consen 25 VIAQLRWLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDK 104 (317)
T ss_pred HHHHHHHHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccchhhhhhccccccccCC
Confidence 455665 677999995 88999999999999999999999999999999999999988751 1133333 356899999
Q ss_pred CCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhh-----cCCCCCeeEEEEEEeCCCCCCCCc-hhH
Q 008033 312 EGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKL-----DFSPSGICTIVQINDLKNSPGPAK-RDL 385 (580)
Q Consensus 312 ~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l-----~~~~~~i~~ivvIiDlkG~s~ls~-~~l 385 (580)
.|+||++.+.|..|.++++.... ..+++++.+.-+|+.+..+ .....+++|+++|+||+|+++..+ ...
T Consensus 105 ~g~~v~~~~~g~~~~~~l~~~~~-----~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~ 179 (317)
T KOG1471|consen 105 EGRPVYIERLGKIDPKGLLKRTG-----SLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPA 179 (317)
T ss_pred CCCEEEEeccCCCCcccceeecc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHH
Confidence 99999999999999999987653 4567777777777665322 122467999999999999863322 123
Q ss_pred HHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCCCCCC
Q 008033 386 RIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSR 465 (580)
Q Consensus 386 ~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyGG~~~ 465 (580)
+..++.++.++|+|||++++++||||+|++|+++|++|+|||+++|++||+++++ ++.+.|+++|++++||.+|||++.
T Consensus 180 ~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~-~~~~~L~k~i~~~~LP~~yGG~~~ 258 (317)
T KOG1471|consen 180 PTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHS-KDKESLLKYIPPEVLPEEYGGTCG 258 (317)
T ss_pred HHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCC-CchhhhhhhCCHhhCccccCCCcc
Confidence 5679999999999999999999999999999999999999999999999995544 589999999999999999999999
Q ss_pred CC
Q 008033 466 EG 467 (580)
Q Consensus 466 ~~ 467 (580)
+.
T Consensus 259 ~~ 260 (317)
T KOG1471|consen 259 DL 260 (317)
T ss_pred cc
Confidence 85
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=8.1e-37 Score=313.74 Aligned_cols=199 Identities=32% Similarity=0.565 Sum_probs=171.7
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCC-Cccccccccc-ceeEeeeccCCCCCeEEEEEccccCccc
Q 008033 251 DDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDA-VLEEDLGNDL-DKVVFMHGVDKEGHPVCYNVFGEFQNKE 328 (580)
Q Consensus 251 ~~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~iD~-i~~~~l~~el-~k~~~l~G~Dk~GrPV~~~~~g~~d~k~ 328 (580)
.+++|.+||||||||+||+++|.+||.++|.||+.+++.. +..+.+..++ .++.++.|+|++||||+|+++.. +..+
T Consensus 45 ~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~-~~qn 123 (324)
T KOG1470|consen 45 KWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILGHDKDGRPVLYLRPRP-HRQN 123 (324)
T ss_pred hcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEecccCCCCeEEEEecCC-CCCC
Confidence 3569999999999999999999999999999999999988 5555555444 57888999999999999996553 2221
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCCchhHHHHHHHHHHhccccCceeeeeEE
Q 008033 329 LYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQV 408 (580)
Q Consensus 329 l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls~~~l~~~lK~il~llqd~YPErL~ki~ 408 (580)
+ .+...+.|+++|+||.++..| +.++.++++++||+|++ +++.+ .++.+.++.+||+|||+||+.++
T Consensus 124 ----~----~t~~~~~r~~Vy~mE~Ai~~l---p~~qe~~~~L~D~~~fs-~sN~d-~~~~k~~~~~lq~hYPErLg~a~ 190 (324)
T KOG1470|consen 124 ----T----KTQKELERLLVYTLENAILFL---PPGQEQFVWLFDLTGFS-MSNPD-IKFLKELLHILQDHYPERLGKAL 190 (324)
T ss_pred ----C----CCHHHHHHHHHHHHHHHHHhC---CCCcceEEEEEecccCc-ccCCC-cHHHHHHHHHHHHhChHHhhhhh
Confidence 1 236789999999999997554 67788999999999996 66666 78899999999999999999999
Q ss_pred EEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCCCCCCC
Q 008033 409 FINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSRE 466 (580)
Q Consensus 409 IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyGG~~~~ 466 (580)
|+|+||+|..+|++|+|||++.|++||.|+.+ .+.|.+|||+++||..|||....
T Consensus 191 l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~---~~~l~~~~d~~~l~s~~GG~~~~ 245 (324)
T KOG1470|consen 191 LVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP---KDDLSEYFDESQLPSLFGGKLLF 245 (324)
T ss_pred hcCChHHHHHHHHHhhhccChhhhceeEEecC---hhHHHhhCCccccchhhCCCccc
Confidence 99999999999999999999999999999976 44599999999999999996554
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.95 E-value=2.6e-28 Score=227.92 Aligned_cols=151 Identities=32% Similarity=0.620 Sum_probs=121.5
Q ss_pred eeEeeeccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCC
Q 008033 302 KVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPA 381 (580)
Q Consensus 302 k~~~l~G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls 381 (580)
+..+++|+|++||||+|+++|++|.... ...+++++.++++|.+++.+.. .++++++++|+|++|++ ++
T Consensus 7 ~~~~~~g~D~~gr~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~E~~~~~~~~-~~~~~~~~~iiD~~g~~-~~ 75 (159)
T PF00650_consen 7 GPFYLHGRDKDGRPVIYIRLGRFDPKKF---------SPEDVIRFFVYLLERMLKRMPE-GGQVEGIVVIIDLSGFS-LS 75 (159)
T ss_dssp SCEEEEEE-TTS-EEEEEEGTT--HHTS----------HHHHHHHHHHHHHHHHHTHHH-TSHHH-EEEEEE-TT---HH
T ss_pred eeEEECCCCCCcCEEEEEEcccCCCCcC---------CHHHHHHHHHHHHHHHHhhhcc-cccceeEEEEEeCCCce-Ee
Confidence 4578999999999999999999998743 3578999999999999865543 46789999999999875 22
Q ss_pred chh--HHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCcccc
Q 008033 382 KRD--LRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQ 459 (580)
Q Consensus 382 ~~~--l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~e 459 (580)
... ..++++.+++++|++||+|++++||||+|++|+++|+++++||+++|++||+|+++.++.+.|.++||+++||.+
T Consensus 76 ~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~ 155 (159)
T PF00650_consen 76 NFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVE 155 (159)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGG
T ss_pred ccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchh
Confidence 111 156789999999999999999999999999999999999999999999999999876677899999999999999
Q ss_pred CCCC
Q 008033 460 YGGL 463 (580)
Q Consensus 460 yGG~ 463 (580)
|||+
T Consensus 156 ~GG~ 159 (159)
T PF00650_consen 156 YGGT 159 (159)
T ss_dssp GTSS
T ss_pred cCCC
Confidence 9996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.93 E-value=1e-25 Score=210.18 Aligned_cols=145 Identities=34% Similarity=0.611 Sum_probs=127.9
Q ss_pred ccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCCchhHHH
Q 008033 308 GVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRI 387 (580)
Q Consensus 308 G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls~~~l~~ 387 (580)
|+|++||||+|+++|+++.... +.+++++++++.+|.+++. ...+.++.++++|+|++|++. +... ++
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~---------~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~i~D~~~~~~-~~~~-~~ 81 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSV---------TLEELLRYLVYVLEKILQR-EKKTGGIEGFTVIFDLKGLSM-SNPD-LS 81 (158)
T ss_pred CCCCCcCEEEEEeccccccCcC---------CHHHHHHHHHHHHHHHHHH-HhcCCCeeeEEEEEECCCCCc-cccc-HH
Confidence 6999999999999999885432 3678999999999999864 223577899999999999863 3333 67
Q ss_pred HHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCCCCCC
Q 008033 388 ATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSR 465 (580)
Q Consensus 388 ~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyGG~~~ 465 (580)
+++.++.+++++||++++++||||+|++|+++|+++++||++++++||+++++ ++.+.|.++||+++||.+|||++.
T Consensus 82 ~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~-~~~~~L~~~i~~~~lP~~~GG~~~ 158 (158)
T smart00516 82 VLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGN-DSKEELLEYIDPEQLPEELGGTLD 158 (158)
T ss_pred HHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCC-CCHHHHHhhCCHhhCcHhhCCCCC
Confidence 89999999999999999999999999999999999999999999999999986 568899999999999999999863
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.90 E-value=1.6e-23 Score=192.66 Aligned_cols=146 Identities=33% Similarity=0.537 Sum_probs=122.9
Q ss_pred eeeccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCCchh
Q 008033 305 FMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRD 384 (580)
Q Consensus 305 ~l~G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls~~~ 384 (580)
+..|.|++||||++.++++.+....+ ..++++++.++.+|.+++.... ..+++++|+|++|++...+..
T Consensus 12 ~~~~~D~~gr~V~~~~~~~~~~~~~~--------~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~i~D~~~~~~~~~~~ 80 (157)
T cd00170 12 YLGGRDKEGRPVLIIRAGNKDLSKSL--------DSEELLRYLVYTLEKLLQEDDE---QVEGFVVIIDLKGLSLSHLLP 80 (157)
T ss_pred ccCCCCCCcCEEEEEecCCcchhhcC--------CHHHHHHHHHHHHHHHHhhhhh---cccceEEEEECCCCChhccch
Confidence 34456999999999999976655442 1268999999999999865433 236899999999987322211
Q ss_pred HHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCCCC
Q 008033 385 LRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGL 463 (580)
Q Consensus 385 l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyGG~ 463 (580)
..+.++.++.+++++||++++++||||+|++|.++|+++++||++++++||++++++ .+.|.++|++++||.+|||+
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~--~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD--KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC--HHHHHhhCChhhCcHhhCCC
Confidence 357899999999999999999999999999999999999999999999999999762 78999999999999999996
No 6
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=99.85 E-value=2.7e-21 Score=174.58 Aligned_cols=92 Identities=26% Similarity=0.339 Sum_probs=79.7
Q ss_pred ecCCCceEEEeeecC-CceEEEEEEEeecceeeeeEeccCCCC-------------------------------------
Q 008033 482 VKPASKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPSAEG------------------------------------- 523 (580)
Q Consensus 482 Ikag~k~~V~i~V~e-gs~L~WeF~t~~~DI~Fgi~f~~~~~~------------------------------------- 523 (580)
|++|...+|.++..+ |..|+|+|.|+++|||||++|..+...
T Consensus 1 v~~Ge~~tvrVpt~~~G~~l~WeFaTd~yDIgFG~~few~~~~s~~vsv~vses~de~~~~~~~~~~~~~~~ve~gs~~~ 80 (136)
T PF13897_consen 1 VGRGETVTVRVPTHPEGKCLFWEFATDSYDIGFGVYFEWTPPTSNQVSVHVSESSDEEDEEEEEEEDSESGDVEKGSERS 80 (136)
T ss_pred CCcCcEEEEEcccCCCCCEEEEEEeeCCCCceEEEEEEecCCCCCceeEecccCccccccccccccccCccchhcccccc
Confidence 578899999999887 999999999999999999999532000
Q ss_pred --CceEEEecceeecCCCcccccCeEEeCcCcEEEEEEEcCCC--CceeEEEEEE
Q 008033 524 --SYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSS--KKKKLLYRSK 574 (580)
Q Consensus 524 --~~~~iV~~~~r~~~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~ 574 (580)
+....|.|..|++||..+ +.|++.|+.+|+|+|.|||||| |+|+|+|+|-
T Consensus 81 ~~~~~~eviPv~R~dsH~~~-~~Gs~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V~ 134 (136)
T PF13897_consen 81 SRPEMDEVIPVYRRDSHLEV-EAGSHTCPGPGVYVLKFDNSYSWFRSKKLYYRVY 134 (136)
T ss_pred CCCCeeEEeEeeeeecCcce-eceEEECCCCeEEEEEeeCcceeEEeeEEEEEEE
Confidence 013567888999999999 8999999999999999999999 9999999984
No 7
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.7e-14 Score=146.58 Aligned_cols=95 Identities=23% Similarity=0.328 Sum_probs=81.2
Q ss_pred eeeecCCCceEEEeeecC-CceEEEEEEEeecceeeeeEeccCCC--------------CC-------------------
Q 008033 479 EVVVKPASKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPSAE--------------GS------------------- 524 (580)
Q Consensus 479 ~v~Ikag~k~~V~i~V~e-gs~L~WeF~t~~~DI~Fgi~f~~~~~--------------~~------------------- 524 (580)
.++|+.|.+.+|.++..+ |+.|.|+|.|+++||||||+|..... +.
T Consensus 323 vItvGhGetVTVRVPThenGsclFWEFATD~YDIGFGvYFEWt~~~~n~VsVHVSeSddded~~~~~e~E~~e~G~~~~E 402 (469)
T KOG3878|consen 323 VITVGHGETVTVRVPTHENGSCLFWEFATDSYDIGFGVYFEWTKPVTNEVSVHVSESDDDEDCVYLSETEDLESGSLSQE 402 (469)
T ss_pred eEEecCCceEEEeccccCCCceEEEEeccccccccceEEEEeecCCCceeEEEecccccchhhhhhhhhhhhhcCCchhh
Confidence 689999999999999987 99999999999999999999963211 00
Q ss_pred -------------ceEEEecceeecCCCcccccCeEEeCcCcEEEEEEEcCCC--CceeEEEEEE
Q 008033 525 -------------YTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSS--KKKKLLYRSK 574 (580)
Q Consensus 525 -------------~~~iV~~~~r~~~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~ 574 (580)
-..+|.|.-|..||... ..||+..+.-|.|.|.|||||| |+|.|.||+=
T Consensus 403 ~gA~~n~~~anKp~~deIvPvYRRdCheEV-YaGSH~YPGrGvYLLKFDNSYSlWRsKtlYYRVY 466 (469)
T KOG3878|consen 403 RGAVNNPTAANKPPIDEIVPVYRRDCHEEV-YAGSHSYPGRGVYLLKFDNSYSLWRSKTLYYRVY 466 (469)
T ss_pred hhhhcCCCCCCCCCcccccchhhhhhhHHh-hcccccCCCCceEEEEecchhhhhcccceEEEEE
Confidence 02356777788999877 6999999999999999999999 9999999974
No 8
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.46 E-value=5.3e-14 Score=131.20 Aligned_cols=142 Identities=19% Similarity=0.309 Sum_probs=93.1
Q ss_pred EeeeccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCCch
Q 008033 304 VFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKR 383 (580)
Q Consensus 304 ~~l~G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls~~ 383 (580)
++..|+|++||||+++...++ ... ...+.++.|++..+... + ...++++|+|++|.+..+..
T Consensus 4 ~~~gG~d~~g~pV~~~~~~~~-~~~---------~~~~~ll~yl~~~l~~~---~-----~~~~f~vVid~~~~~~~~~~ 65 (149)
T PF13716_consen 4 FYPGGRDREGRPVVVFIASRL-PSS---------DDLERLLLYLLSTLSEE---V-----VDKPFSVVIDHTGFSRSSEP 65 (149)
T ss_dssp -EEEEEBTTS-EEEEEEGGG--C-T---------THHHHHHHHHHHHH-TT---T-----TTS-EEEEEE-TT--GGG--
T ss_pred EEecccCCCcCEEEEEECCcC-cch---------hhHHHHHHHHHHhhhHH---h-----cCCCEEEEEEcCCCccccCC
Confidence 456789999999999886665 211 13455666655554221 1 12359999999987532222
Q ss_pred hHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHH-HhhcccCCccc-cceEEEeCCCcchhhhhcccCCCCccccCC
Q 008033 384 DLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFN-RMISPFLTQRT-KSKFVFSGPSKSAETLFKYIAPEQVPVQYG 461 (580)
Q Consensus 384 ~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw-~lIKpFL~~kT-r~KI~~~~~~~~~e~L~k~Id~d~LP~eyG 461 (580)
.++.++++.+++...|+..|+++||||+.++++.++ .+.+++++.+. ..||+++. +...|.+|||+++||..+|
T Consensus 66 -~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~---sl~~L~~~i~~~qL~~~lp 141 (149)
T PF13716_consen 66 -SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVS---SLSELSKHIDPSQLPESLP 141 (149)
T ss_dssp --HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEES---STCGGGGTSGGGG------
T ss_pred -chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEEC---CHHHHHhhCCHHHhcccCC
Confidence 378899999999999999999999999999999999 66677888888 99999995 4889999999999999999
Q ss_pred CCCCCC
Q 008033 462 GLSREG 467 (580)
Q Consensus 462 G~~~~~ 467 (580)
|....+
T Consensus 142 ~~~~~d 147 (149)
T PF13716_consen 142 GVLQYD 147 (149)
T ss_dssp HHH---
T ss_pred CEEecC
Confidence 876543
No 9
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.27 E-value=7.9e-07 Score=69.52 Aligned_cols=31 Identities=52% Similarity=0.865 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 008033 249 LGDDRSDTILLKFLRARDFKVKDAFTMIKNT 279 (580)
Q Consensus 249 L~~~~tD~~LLRFLRArkfDVekA~~mLk~~ 279 (580)
.....+|.+||||||||+||+++|..||++|
T Consensus 25 ~~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 25 EKEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 4556799999999999999999999999876
No 10
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=8.8e-06 Score=86.50 Aligned_cols=132 Identities=11% Similarity=0.233 Sum_probs=94.0
Q ss_pred Eeeec-cCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCCc
Q 008033 304 VFMHG-VDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAK 382 (580)
Q Consensus 304 ~~l~G-~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls~ 382 (580)
.++.+ .|+.||.|+++...++....-+ .-..++++.++.+++.++. + ++.++=-.|.+ ..+
T Consensus 83 qvi~~~~D~~gr~iivv~a~rlp~~~el--------d~~~li~~~v~~id~~Ve~-D--------Yt~vYfh~gl~-s~n 144 (467)
T KOG4406|consen 83 QVIGDAKDKQGRKIIVVYACRLPSSSEL--------DDIRLISYLVYTIDKYVEN-D--------YTLVYFHHGLP-SDN 144 (467)
T ss_pred eeccCcccccCCeeEEEEEecCCchhhh--------hhHHHHHHHHHHHHHHHhc-c--------ceeeehhcCCc-ccc
Confidence 33433 6999999999888877543321 1234899999999999853 1 23332223332 223
Q ss_pred hhHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCc
Q 008033 383 RDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQV 456 (580)
Q Consensus 383 ~~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~L 456 (580)
+..++++.....-+-.+|---++.+|+|.+-|+++++|++++||++.+..+||+.++ +.++|.++|.-+.|
T Consensus 145 kp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n---~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 145 KPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN---SLSELFEALKLNRL 215 (467)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee---hHHHHHHhhhhhhh
Confidence 333455555555556668888999999999999999999999999999999999994 68899988764443
No 11
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0011 Score=65.39 Aligned_cols=101 Identities=25% Similarity=0.353 Sum_probs=69.0
Q ss_pred ccccCCCCCCCCCCcccccCCCceeeecCCCceEEEeeecCCceEEEEEEEee----cceeeeeEeccCCCCCceEEEec
Q 008033 456 VPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLG----WDVSYGAEFVPSAEGSYTVIVSK 531 (580)
Q Consensus 456 LP~eyGG~~~~~d~e~~~~d~~~~v~Ikag~k~~V~i~V~egs~L~WeF~t~~----~DI~Fgi~f~~~~~~~~~~iV~~ 531 (580)
+|...+|-..+. ...|+.-++.|.+|++.-.--++..|.+|.-++.+.+ .||+|.+.- | .| .+++..
T Consensus 18 ~~~~l~ga~g~~----pa~d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G~GDl~i~Ftl~~-P--~G--~~lv~~ 88 (236)
T KOG3287|consen 18 PPVELLGAAGDQ----PADDYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDGAGDLDIDFTLLN-P--AG--EVLVSD 88 (236)
T ss_pred cceecccccCCC----cccccceEEEecCCCceeeeeeccCCeEEEEEEEEEecCCccceeeEEeC-C--Cc--cEEeec
Confidence 455655543332 1123334788999999988888888988888888863 388888863 2 22 345555
Q ss_pred ceeecCCCcccccCeE--EeCcCcEEEEEEEcCCC--CceeEEEEE
Q 008033 532 TRKVAPTDEPVICDTF--KIGEPGKVVLTIDNQSS--KKKKLLYRS 573 (580)
Q Consensus 532 ~~r~~~~~~p~~~Gs~--~~~epG~yvL~fDNs~S--~sKkl~Y~i 573 (580)
.++. .|.+ ...++|.|.|.|||||| .+|.|.+.+
T Consensus 89 q~k~--------dg~ht~e~~e~GdY~~CfDNsFS~fs~K~Vffel 126 (236)
T KOG3287|consen 89 QRKV--------DGVHTVEVTETGDYQVCFDNSFSTFSRKLVFFEL 126 (236)
T ss_pred cccc--------CceeEeeccCCcceEEEEcCccccccceEEEEEE
Confidence 5543 3333 34689999999999999 677777777
No 12
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.13 Score=50.44 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=45.4
Q ss_pred eeecC-CceEEEEEEEe---ecceeeeeEeccCCCCCceEEEe-cceeecCCCcccccCeEEeCcCcEEEEEEEcCCC-C
Q 008033 492 IPVTE-RSILVWELRVL---GWDVSYGAEFVPSAEGSYTVIVS-KTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSS-K 565 (580)
Q Consensus 492 i~V~e-gs~L~WeF~t~---~~DI~Fgi~f~~~~~~~~~~iV~-~~~r~~~~~~p~~~Gs~~~~epG~yvL~fDNs~S-~ 565 (580)
..+.. ++++..+|.|. +.||+|-|.- | +|. +++. ..+|++ .=.|+....|+|.+.|+|.|| .
T Consensus 38 ~d~~~~~~~~~~~fqV~tGG~fDVD~~I~a-P---dgk-vI~~~~kk~~~-------~~~f~ae~~G~Y~fCFsN~fstf 105 (209)
T KOG1693|consen 38 EDLKKDDDTTSFEFQVQTGGHFDVDYDIEA-P---DGK-VIYSEKKKRYD-------SFLFKAEGKGEYTFCFSNEFSTF 105 (209)
T ss_pred eecccCCceEEEEEEEEeCCceeeEEEEEC-C---CCC-EEeeccccccc-------cEEEEEecceEEEEEecCccccc
Confidence 33444 56677777776 2388888873 3 233 3333 333333 335778899999999999999 6
Q ss_pred ceeEEE-EEEe
Q 008033 566 KKKLLY-RSKT 575 (580)
Q Consensus 566 sKkl~Y-~i~v 575 (580)
++|+-| .+++
T Consensus 106 ~~Kiv~~~~q~ 116 (209)
T KOG1693|consen 106 SHKIVYMDFQV 116 (209)
T ss_pred cceEeeehhhh
Confidence 666555 3443
No 13
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=0.11 Score=50.60 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=40.8
Q ss_pred ceeeeeEeccCCCCCceEEEecceeecCCCcccccCeEEeCcCcEEEEEEEcCCC--CceeEEEEEEec
Q 008033 510 DVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSS--KKKKLLYRSKTK 576 (580)
Q Consensus 510 DI~Fgi~f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~v~ 576 (580)
||+|.|+= | ++ .+|.+..+-++ -.=+|.++.+|+|.+.|+|.+| .+|.|.+.|++-
T Consensus 56 ~vd~~I~g-P---~~--~~i~~~~~~ss-----gk~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg 113 (201)
T KOG1692|consen 56 GVDVEITG-P---DG--KIIHKGKRESS-----GKYTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVG 113 (201)
T ss_pred ceeEEEEC-C---CC--chhhhcccccC-----ceEEEEecCCceEEEEecCCCCCCCceEEEEEEEEe
Confidence 66666652 3 11 24565554433 2457889999999999999999 999999999873
No 14
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=84.94 E-value=0.28 Score=46.31 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred eeecCCCceEEEeeecCCceEEEEEEEeec----ceeeeeEeccCCCCCceEEEecceeecCCCcccccCeEEeCcCcEE
Q 008033 480 VVVKPASKYTVEIPVTERSILVWELRVLGW----DVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKV 555 (580)
Q Consensus 480 v~Ikag~k~~V~i~V~egs~L~WeF~t~~~----DI~Fgi~f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs~~~~epG~y 555 (580)
+.|.+|...-+...+..|..+...|++.++ +|.|.|+ -| ++....++.... ..+. -.=+|.+.++|.|
T Consensus 4 f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~-~~--~~~~~~i~~~~~-~~~~----~~f~f~~~~~G~y 75 (183)
T PF01105_consen 4 FELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIR-DP--DPNGEVIYSKSD-KESE----GSFSFTAKESGEY 75 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEE-ec--ccCCceeeeecc-cccC----CcEEEEeccCCCE
Confidence 457777777777777778888877777644 3555554 12 121122222211 1110 1335677899999
Q ss_pred EEEEEcCCC--Cc-eeEEEEEEec
Q 008033 556 VLTIDNQSS--KK-KKLLYRSKTK 576 (580)
Q Consensus 556 vL~fDNs~S--~s-Kkl~Y~i~v~ 576 (580)
.|.|+|+.| .+ +.|.+.+.+.
T Consensus 76 ~iCf~n~~~~~~~~~~v~~~~~~~ 99 (183)
T PF01105_consen 76 QICFDNSSSSFSPSKRVSFDIDVG 99 (183)
T ss_dssp ------------------------
T ss_pred EEEEEcCCCCccccEEEEEEEEEe
Confidence 999999988 34 8888888764
No 15
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=67.24 E-value=14 Score=34.34 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.4
Q ss_pred cCCCcccccCeEEeCcCcEEEEEEEc
Q 008033 536 APTDEPVICDTFKIGEPGKVVLTIDN 561 (580)
Q Consensus 536 ~~~~~p~~~Gs~~~~epG~yvL~fDN 561 (580)
+.+-.+ ..|.|.|+-||.|.++|.=
T Consensus 35 g~~yd~-~TG~Ftcpv~GvY~F~f~~ 59 (135)
T smart00110 35 QGHYDP-RTGKFTCPVPGVYYFSYHV 59 (135)
T ss_pred CCCccC-CCCEEECeeceEEEEEEEE
Confidence 344456 6999999999999999983
No 16
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=67.00 E-value=37 Score=28.61 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=50.7
Q ss_pred eeecCCCceEEEeeecCCceEEEEEEEeecceee-eeEeccCCCCCceEEEecceeecCCCcccccCeEEeCcCcEEEEE
Q 008033 480 VVVKPASKYTVEIPVTERSILVWELRVLGWDVSY-GAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLT 558 (580)
Q Consensus 480 v~Ikag~k~~V~i~V~egs~L~WeF~t~~~DI~F-gi~f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs~~~~epG~yvL~ 558 (580)
++++.|....|.++-....-..|.+..+..-+.+ +-.|.+...+.. .++.. .. ..=.|.+..+|+..|.
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W~~~~~~~~l~l~~~~~~~~~~~~~--------~vG~~-g~-~~f~f~a~~~G~~~i~ 70 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSWSLSSDSDGLQLVSEEYIPDNSPSG--------LVGAP-GT-RTFTFKALKPGTTTIK 70 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEEEECTSTTTEEEEEEEEEESSTSST--------SSTSS-EE-EEEEEEESSSEEEEEE
T ss_pred CeecCCCEEEEEECCCCCCCeEEEEecCCCeEEEcCCcEEeCCCCcC--------CCCCC-cE-EEEEEEEecCeeEEEE
Confidence 4688899888888888777788987653233333 223333211100 12211 01 1235678889999999
Q ss_pred EEcCCC-----CceeEEEEEEe
Q 008033 559 IDNQSS-----KKKKLLYRSKT 575 (580)
Q Consensus 559 fDNs~S-----~sKkl~Y~i~v 575 (580)
|....+ ..+++.|.+.|
T Consensus 71 ~~y~r~we~~~~~~~~~~~V~V 92 (92)
T PF09394_consen 71 FEYRRPWEKGSPIKTFTITVTV 92 (92)
T ss_dssp EEEEBTTTBSTTSEEEEEEEEE
T ss_pred EEEECcCCCCCccEEEEEEEEC
Confidence 988655 23567777664
No 17
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=56.50 E-value=15 Score=37.08 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcCC---CCCeeEEEEEEeCCCCCCCCchhHHHHHHHHHHhccccCceeeeeEEEEeCChh------HH
Q 008033 347 RIQFLEKSIRKLDFS---PSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWW------YL 417 (580)
Q Consensus 347 ~i~llE~~l~~l~~~---~~~i~~ivvIiDlkG~s~ls~~~l~~~lK~il~llqd~YPErL~ki~IINaP~~------f~ 417 (580)
++|+||+++..++.. -+..+.=.+|+||-|-- --..| ..++++++.-++. .--++..+|++..+++ |+
T Consensus 75 Lv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQI-ELytH-~pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiS 151 (273)
T KOG1534|consen 75 LVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQI-ELYTH-LPVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFIS 151 (273)
T ss_pred chhHHHHHHHHHHHHHhhccCccCCEEEEeCCCee-EEeec-ChhHHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHH
Confidence 567788887666543 34456677899998742 11233 3467777777766 2335666777666654 33
Q ss_pred HHH----HhhcccCCc-cccceEEEeCCCcchhhhhcccCCCCc
Q 008033 418 AFN----RMISPFLTQ-RTKSKFVFSGPSKSAETLFKYIAPEQV 456 (580)
Q Consensus 418 ~iw----~lIKpFL~~-kTr~KI~~~~~~~~~e~L~k~Id~d~L 456 (580)
-.+ .|++-=++. +..+|.-++.+ .++..|..+++++..
T Consensus 152 G~lsAlsAMi~lE~P~INvlsKMDLlk~-~~k~~l~~Fl~~d~~ 194 (273)
T KOG1534|consen 152 GCLSALSAMISLEVPHINVLSKMDLLKD-KNKKELERFLNPDEY 194 (273)
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHhhh-hhHHHHHHhcCCchh
Confidence 333 333333333 45666666665 567778888876543
No 18
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=48.07 E-value=25 Score=25.90 Aligned_cols=24 Identities=13% Similarity=0.403 Sum_probs=20.2
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 008033 254 SDTILLKFLRARDFKVKDAFTMIK 277 (580)
Q Consensus 254 tD~~LLRFLRArkfDVekA~~mLk 277 (580)
++.....||..++||++.|+..+-
T Consensus 14 ~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678889999999999999998763
No 19
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=39.60 E-value=23 Score=31.79 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=21.2
Q ss_pred cccccCeEEeCcCcEEEEEEEcCCCCceeEEEEE
Q 008033 540 EPVICDTFKIGEPGKVVLTIDNQSSKKKKLLYRS 573 (580)
Q Consensus 540 ~p~~~Gs~~~~epG~yvL~fDNs~S~sKkl~Y~i 573 (580)
-+ ..|.|+|+.+|+|.|.|.=..+..+.+...+
T Consensus 33 n~-~tG~Ftap~~G~Y~F~~~~~~~~~~~~~~~L 65 (127)
T PF00386_consen 33 NP-STGIFTAPVPGVYFFSFTIMTSSGSSVWVEL 65 (127)
T ss_dssp ET-TTTEEE-SS-EEEEEEEEEESEEEEEEEEEE
T ss_pred Ee-ecCEEecCCCCEEEEEEEEeccCCchhHHhh
Confidence 34 5899999999999999975533444444333
No 20
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=38.44 E-value=58 Score=23.72 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.4
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMIKN 278 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mLk~ 278 (580)
.+...|.+-|+++++|++.|..+|-.
T Consensus 15 ~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 15 LDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp S-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 57789999999999999999998854
No 21
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=37.92 E-value=64 Score=26.47 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=30.2
Q ss_pred EEEeCCCCCCCCchhHHHHHHHHHHhccccCc--eeeeeEEEEeCChhHHHHH
Q 008033 370 QINDLKNSPGPAKRDLRIATNQAVHLLQDNYP--EFVARQVFINVPWWYLAFN 420 (580)
Q Consensus 370 vIiDlkG~s~ls~~~l~~~lK~il~llqd~YP--ErL~ki~IINaP~~f~~iw 420 (580)
+++|+.|+..++.. ++-.++..|...|+ ..-.++.++|+......+.
T Consensus 20 V~lDF~gv~~~~ss----Fl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I 68 (74)
T PF14213_consen 20 VVLDFEGVESITSS----FLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMI 68 (74)
T ss_pred EEEECCCcccccHH----HHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHH
Confidence 77999998755433 44445555555555 5566888999875554443
No 22
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=31.57 E-value=77 Score=23.10 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=22.3
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMIK 277 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mLk 277 (580)
.++..+.+.|+++++|++.|..+|.
T Consensus 16 l~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 16 LDEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678999999999999999998875
No 23
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=27.67 E-value=1.9e+02 Score=26.51 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=33.8
Q ss_pred eEEEEEEeCCCCCCCCchhHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhccc
Q 008033 366 CTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPF 426 (580)
Q Consensus 366 ~~ivvIiDlkG~s~ls~~~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpF 426 (580)
++++++.|| |.+.++. . .++.++. ++..+++.++|+|.+..++...+...
T Consensus 60 dgVlvl~DL-Ggs~~n~----e---~a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~ 109 (125)
T TIGR02364 60 DGVLIFYDL-GSAVMNA----E---MAVELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQ 109 (125)
T ss_pred CCEEEEEcC-CCcHhHH----H---HHHHHhc---cccccEEEEechhHHHHHHHHHHHHc
Confidence 579999999 7552211 1 1233332 35558899999999999888777644
No 24
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=23.91 E-value=1.1e+02 Score=21.16 Aligned_cols=23 Identities=35% Similarity=0.262 Sum_probs=19.2
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 008033 254 SDTILLKFLRARDFKVKDAFTMI 276 (580)
Q Consensus 254 tD~~LLRFLRArkfDVekA~~mL 276 (580)
+....++-|+.+++|+++|...|
T Consensus 14 ~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 14 SREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Confidence 45688999999999999997755
No 25
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=22.98 E-value=1.2e+02 Score=21.09 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=20.2
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 008033 254 SDTILLKFLRARDFKVKDAFTMIK 277 (580)
Q Consensus 254 tD~~LLRFLRArkfDVekA~~mLk 277 (580)
+....++-|+.+++|+++|...|.
T Consensus 14 ~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 14 SREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHh
Confidence 467789999999999999987763
No 26
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=22.89 E-value=76 Score=36.05 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHc
Q 008033 256 TILLKFLRARDFKVKDAFTMIKNTVRWRNEF 286 (580)
Q Consensus 256 ~~LLRFLRArkfDVekA~~mLk~~l~WRk~~ 286 (580)
-.|.+...+-+-| ...||...+.=|.-|
T Consensus 390 Kqlenhv~afntN---itdmLdSRlkKRnyF 417 (574)
T PF07462_consen 390 KQLENHVNAFNTN---ITDMLDSRLKKRNYF 417 (574)
T ss_pred HHHHHHHHHHHhh---HHHHHHHHHHHHHHH
Confidence 4566666666633 456777777766654
No 27
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=22.39 E-value=50 Score=31.37 Aligned_cols=48 Identities=17% Similarity=0.370 Sum_probs=40.5
Q ss_pred HHHHHHhccccCceeee--eEEEEeCChhHHHHHHhhcccCCc--cccceEEE
Q 008033 389 TNQAVHLLQDNYPEFVA--RQVFINVPWWYLAFNRMISPFLTQ--RTKSKFVF 437 (580)
Q Consensus 389 lK~il~llqd~YPErL~--ki~IINaP~~f~~iw~lIKpFL~~--kTr~KI~~ 437 (580)
.+.++..|-.+||.-++ -.-++|..-.|.++|.-+ |-++. +-|..|++
T Consensus 17 y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~~~kERKQIRL 68 (159)
T PF04838_consen 17 YKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSNVEKERKQIRL 68 (159)
T ss_pred HHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCchHhHHHHHhhh
Confidence 57789999999999999 889999999999999876 55666 66666766
No 28
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=21.60 E-value=2.1e+02 Score=26.32 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=31.2
Q ss_pred eEEEEEEeCCCCCCCCchhHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhccc
Q 008033 366 CTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPF 426 (580)
Q Consensus 366 ~~ivvIiDlkG~s~ls~~~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpF 426 (580)
++++++.|| |.+.++ ....+.++..- .+++++++|..=..+-..+...
T Consensus 58 dGVlVltDL-Gssp~n-------~~~a~e~~~~~-----~~v~~~daPlVEGa~~Aav~~~ 105 (124)
T PRK14484 58 DGVLIFFDL-GSAEMN-------AEMAIEMLDGE-----KKIIIIDAPIVEGAFTAAVLLS 105 (124)
T ss_pred CCeEEEEeC-CChHHH-------HHHHHHhcCCC-----CcEEEECCcHHHHHHHHHHHHc
Confidence 689999999 754222 11234444322 8999999998777666655543
No 29
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=21.58 E-value=1.4e+02 Score=21.02 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=16.9
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 008033 254 SDTILLKFLRARDFKVKDAFTMI 276 (580)
Q Consensus 254 tD~~LLRFLRArkfDVekA~~mL 276 (580)
+.....+-|+.+++|+++|...|
T Consensus 15 ~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 15 SREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp -HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHhC
Confidence 34567788888888888887654
No 30
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=20.52 E-value=2.3e+02 Score=24.14 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=39.7
Q ss_pred EEEEEEeCC-CCCCCCchhHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeC
Q 008033 367 TIVQINDLK-NSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSG 439 (580)
Q Consensus 367 ~ivvIiDlk-G~s~ls~~~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~ 439 (580)
.+.+++|++ ++.+++. ..+...+.+... +...++++=||-.+.|...+.+++..| +..-+++++
T Consensus 32 ~~~ll~d~~~~~~~~~~----~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~~~~~~~----~~~~~~~F~ 96 (109)
T PF11964_consen 32 KIRLLVDLRRDFEGWSP----EARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIANFFAAF----PPIEVRYFP 96 (109)
T ss_dssp SEEEEEEEC-CEEEEHH----HHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHHHHHHHH-----SSEEEEE-
T ss_pred ceEEEEEecCccCCCCH----HHHHHHHHhchh-hhcccCEEEEEECcHHHHHHHHHHHhc----CCCceEEEC
Confidence 466777777 5543322 233333333344 777888888888888999999999887 344566663
No 31
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=20.16 E-value=1e+02 Score=22.80 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.5
Q ss_pred CeEEeCcCcEEEEEEEc
Q 008033 545 DTFKIGEPGKVVLTIDN 561 (580)
Q Consensus 545 Gs~~~~epG~yvL~fDN 561 (580)
.+..-.+||+|.|.|.=
T Consensus 5 ~nW~FT~PG~Y~l~~~a 21 (41)
T TIGR03769 5 ANWVFTKPGTYTLTVQA 21 (41)
T ss_pred cceeeCCCeEEEEEEEE
Confidence 34567899999999964
Done!