Query 008033
Match_columns 580
No_of_seqs 303 out of 1404
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 16:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 9.3E-66 3.2E-70 551.8 30.3 333 237-579 15-387 (403)
2 1aua_A Phosphatidylinositol tr 100.0 4.6E-42 1.6E-46 353.2 15.9 222 237-468 33-269 (296)
3 3q8g_A CRAL-TRIO domain-contai 100.0 6.8E-42 2.3E-46 357.0 14.1 230 236-475 41-293 (320)
4 3hx3_A Retinaldehyde-binding p 100.0 2.3E-40 8E-45 344.7 15.4 216 236-468 60-296 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 9.8E-40 3.4E-44 328.9 18.3 214 236-466 10-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.1 9.9E-11 3.4E-15 118.2 6.8 134 302-457 11-145 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 1.9E-09 6.6E-14 110.6 5.9 134 302-457 30-164 (290)
8 2cio_B Inhibitor of cysteine p 63.0 46 0.0016 29.0 9.7 87 475-564 10-102 (121)
9 3m86_A Amoebiasin-2; cysteine 62.8 57 0.002 27.9 10.1 92 474-575 12-110 (111)
10 2wnv_A C1Q chain A, complement 60.9 6.5 0.00022 34.8 3.8 25 536-561 30-54 (134)
11 2wnv_C C1Q chain C, complement 57.0 8.9 0.0003 33.8 3.9 24 537-561 35-58 (131)
12 2wnv_B C1Q chain B, complement 56.7 9.1 0.00031 34.0 4.0 25 536-561 33-57 (136)
13 1gr3_A Collagen X; extracellul 55.7 9.2 0.00031 35.2 3.9 23 538-561 61-83 (160)
14 2q3l_A Uncharacterized protein 52.5 23 0.00078 30.9 5.8 98 310-438 16-115 (126)
15 1o91_A Collagen alpha 1(VIII) 52.1 12 0.00041 35.0 4.2 24 537-561 78-101 (178)
16 3jqw_A COLH protein, collagena 43.2 84 0.0029 27.4 8.0 33 543-577 85-117 (121)
17 4g9s_B Inhibitor of G-type lys 38.9 1.4E+02 0.0048 25.1 8.7 86 481-576 21-109 (111)
18 1wgl_A TOLL-interacting protei 38.5 54 0.0018 25.1 5.2 26 253-278 23-48 (59)
19 2ka3_A Emilin-1; C1Q-like doma 38.4 29 0.001 31.7 4.4 23 537-560 44-66 (162)
20 2di0_A Activating signal coint 35.3 34 0.0012 27.4 3.7 30 248-278 23-52 (71)
21 2h7w_A Chagasin; beta-strands, 31.3 1.4E+02 0.0047 26.4 7.5 80 473-564 28-113 (131)
22 2wgn_B Inhibitor of cysteine p 29.2 2.9E+02 0.01 24.2 10.5 91 475-575 32-131 (132)
23 4dzg_A PLIG; lysozyme inhibito 28.7 49 0.0017 28.5 3.9 83 482-575 24-111 (114)
24 1nqj_A Class 1 collagenase; be 27.6 2.3E+02 0.0078 24.6 8.1 30 543-576 89-118 (119)
25 1z96_A DNA-damage, UBA-domain 27.6 63 0.0022 21.9 3.7 23 254-276 17-39 (40)
26 2xr4_A Lectin; sugar binding p 26.9 2.3E+02 0.0078 24.6 7.7 85 427-519 9-97 (116)
27 1ufz_A Hypothetical protein BA 26.2 78 0.0027 26.0 4.4 31 249-279 45-75 (83)
28 4dou_A Adiponectin; single-cha 25.4 45 0.0015 35.6 3.8 23 538-561 56-78 (442)
29 1v92_A NSFL1 cofactor P47; 3-h 25.1 52 0.0018 23.1 2.9 23 254-276 19-41 (46)
30 2dah_A Ubiquilin-3; UBA domain 24.2 83 0.0028 23.5 4.0 26 254-279 23-48 (54)
31 4dou_A Adiponectin; single-cha 24.2 45 0.0016 35.5 3.5 24 538-562 197-220 (442)
32 4f3j_A Complement C1Q tumor ne 23.7 41 0.0014 30.0 2.6 23 537-560 33-55 (148)
33 1wr1_B Ubiquitin-like protein 23.2 71 0.0024 24.3 3.5 27 253-279 30-56 (58)
34 2dna_A Unnamed protein product 22.7 73 0.0025 25.1 3.5 27 253-279 32-58 (67)
35 1otr_A Protein CUE2; protein-p 22.7 78 0.0027 23.3 3.5 27 253-279 18-44 (49)
36 2dal_A Protein KIAA0794; FAS a 22.4 76 0.0026 24.2 3.6 24 253-276 28-51 (62)
37 1q02_A Sequestosome 1; helical 21.8 61 0.0021 24.3 2.7 25 253-277 24-48 (52)
38 2bwb_A Ubiquitin-like protein 21.7 86 0.0029 22.5 3.5 25 253-277 20-44 (46)
39 2knz_A Ubiquilin-4; cytoplasm, 21.1 72 0.0025 23.6 3.1 25 254-278 25-49 (53)
40 3ct6_A PTS-dependent dihydroxy 20.9 1E+02 0.0034 27.2 4.5 42 366-422 59-100 (131)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=9.3e-66 Score=551.82 Aligned_cols=333 Identities=24% Similarity=0.365 Sum_probs=280.5
Q ss_pred ChhHHHhhcC---CCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCCcccccccc-cce--eEeeeccC
Q 008033 237 PPEKVFIWGI---PLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGND-LDK--VVFMHGVD 310 (580)
Q Consensus 237 ~~~~~~~W~~---PlL~~~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~iD~i~~~~l~~e-l~k--~~~l~G~D 310 (580)
.+++++.|.. |+|+ ..+|.+||||||||+||+++|.+||++++.||+.++++.+.. +..++ +.. ..+++|+|
T Consensus 15 ~l~~lr~~l~~~~~~l~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g~D 92 (403)
T 1olm_A 15 ALAKFRENVQDVLPALP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCGYD 92 (403)
T ss_dssp HHHHHHHHHGGGGGGSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEEEC
T ss_pred HHHHHHHHHHhhccCCC-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeeccC
Confidence 5678899983 4555 589999999999999999999999999999999999988775 22222 211 23478999
Q ss_pred CCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCC----CCCeeEEEEEEeCCCCCCCCch--h
Q 008033 311 KEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFS----PSGICTIVQINDLKNSPGPAKR--D 384 (580)
Q Consensus 311 k~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~----~~~i~~ivvIiDlkG~s~ls~~--~ 384 (580)
++||||+|+++|++|++++++.. +..++++++++++|.+++.+..+ +.++.++++|+||+|++ +++. .
T Consensus 93 k~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s-l~~~~~~ 166 (403)
T 1olm_A 93 LDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLG-LKHLWKP 166 (403)
T ss_dssp TTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCC-GGGGCHH
T ss_pred CCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCC-HHHHhhH
Confidence 99999999999999999876532 36789999999999998766542 33588999999999986 3221 1
Q ss_pred HHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCCCCC
Q 008033 385 LRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLS 464 (580)
Q Consensus 385 l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyGG~~ 464 (580)
..++++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|.+|||+++||.+|||++
T Consensus 167 ~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~~ 245 (403)
T 1olm_A 167 AVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTM 245 (403)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSSB
T ss_pred HHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCCc
Confidence 35678999999999999999999999999999999999999999999999999986 67889999999999999999999
Q ss_pred CCCC--Ccccc------------------cCCC-ceeeecCCCceEEEeeecC-CceEEEEEEEeecceeeeeEeccCC-
Q 008033 465 REGE--QEFTT------------------TDPV-TEVVVKPASKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPSA- 521 (580)
Q Consensus 465 ~~~d--~e~~~------------------~d~~-~~v~Ikag~k~~V~i~V~e-gs~L~WeF~t~~~DI~Fgi~f~~~~- 521 (580)
.+.+ +.|.. .+.. +.++|++|++++|+|+|.. ||+|+|+|+|++|||+|||+|.+..
T Consensus 246 ~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~~~~~~~ 325 (403)
T 1olm_A 246 TDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMG 325 (403)
T ss_dssp CCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEEEC----
T ss_pred CCCCCCcccccccccCCCCCcccccCCCcccccceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEEEecccc
Confidence 8753 44531 1123 4599999999999999985 9999999999999999999998532
Q ss_pred ---CCCceEEEecceeecCCCcccccCeEEeCcCcEEEEEEEcCCC--CceeEEEEEEecCCC
Q 008033 522 ---EGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSS--KKKKLLYRSKTKPSS 579 (580)
Q Consensus 522 ---~~~~~~iV~~~~r~~~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~v~~~~ 579 (580)
.++....|.|..|+.||.++ ++|+|.|++||+|+|+|||+|| ++|+|+|++++++|+
T Consensus 326 ~~~~~~~~~~v~p~~r~~~~~~~-~~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~~~ 387 (403)
T 1olm_A 326 ERQRAGEMTEVLPNQRYNSHLVP-EDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPD 387 (403)
T ss_dssp CCCCGGGSEEEEEEEEECTTTSC-EEEEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEECCC
T ss_pred cccCCCcceEEeeeeeecCcccc-ccCEEEcCCCeEEEEEEeccccceeceEEEEEEEEeCCc
Confidence 21334556678999999999 7999999999999999999999 999999999999875
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=4.6e-42 Score=353.22 Aligned_cols=222 Identities=27% Similarity=0.392 Sum_probs=187.7
Q ss_pred ChhHHHhhc--CCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCCcccccc---ccccee--Eeeecc
Q 008033 237 PPEKVFIWG--IPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLG---NDLDKV--VFMHGV 309 (580)
Q Consensus 237 ~~~~~~~W~--~PlL~~~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~iD~i~~~~l~---~el~k~--~~l~G~ 309 (580)
.+++++.|. .|+ +...||.+||||||||+||+++|.+||++++.||+.++++.+...... +.+.+. .+++|+
T Consensus 33 ~l~~lr~~l~~~~~-~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ 111 (296)
T 1aua_A 33 ALAELRKLLEDAGF-IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKT 111 (296)
T ss_dssp HHHHHHHHHHHTTC-CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEE
T ss_pred HHHHHHHHHHhcCC-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceeccc
Confidence 578899998 564 556899999999999999999999999999999999998877643221 122222 368999
Q ss_pred CCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhc-----CCCCCeeEEEEEEeCCCCCCCCchh
Q 008033 310 DKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLD-----FSPSGICTIVQINDLKNSPGPAKRD 384 (580)
Q Consensus 310 Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~-----~~~~~i~~ivvIiDlkG~s~ls~~~ 384 (580)
|++||||+|+++|++|++++++.. ..+++++++++.+|.+++.+. ..+..++++++|+||+|++ +.+
T Consensus 112 Dk~GrpV~i~~~g~~d~~~~~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s---~~~ 183 (296)
T 1aua_A 112 DKDGRPVYFEELGAVNLHEMNKVT-----SEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS---ISS 183 (296)
T ss_dssp CTTSCEEEEECGGGCCHHHHTTTC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCC---HHH
T ss_pred CCCCCEEEEEeeccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCC---HHH
Confidence 999999999999999998875432 357899999999999875321 1134588999999999875 444
Q ss_pred H---HHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCC
Q 008033 385 L---RIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYG 461 (580)
Q Consensus 385 l---~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyG 461 (580)
+ .++++.++.++|+|||+||+++||||+||+|.++|++|+|||+++|++||+|+++ ++.+.|+++||+++||.+||
T Consensus 184 ~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yG 262 (296)
T 1aua_A 184 AYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENLPVKFG 262 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSSBGGGT
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCHhhCcHHhC
Confidence 3 4678999999999999999999999999999999999999999999999999987 57889999999999999999
Q ss_pred CCCCCCC
Q 008033 462 GLSREGE 468 (580)
Q Consensus 462 G~~~~~d 468 (580)
|++++.+
T Consensus 263 G~~~~~~ 269 (296)
T 1aua_A 263 GKSEVDE 269 (296)
T ss_dssp SCBCCCG
T ss_pred CCCCCCC
Confidence 9999875
No 3
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=6.8e-42 Score=356.98 Aligned_cols=230 Identities=27% Similarity=0.401 Sum_probs=191.2
Q ss_pred CChhHHHhhc--CCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCCccccccc---------ccc--e
Q 008033 236 VPPEKVFIWG--IPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGN---------DLD--K 302 (580)
Q Consensus 236 ~~~~~~~~W~--~PlL~~~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~iD~i~~~~l~~---------el~--k 302 (580)
+.+++++.|. .|+ +...||.+||||||||+||+++|.+||+++++||+.+++|.+......+ .+. .
T Consensus 41 ~~l~~lR~~l~~~~~-~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~ 119 (320)
T 3q8g_A 41 EALLQFRSILLEKNY-KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMY 119 (320)
T ss_dssp HHHHHHHHHHHHTTC-CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhC
Confidence 3578999998 564 4578999999999999999999999999999999999998876432111 121 2
Q ss_pred eEeeeccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhh-c----CCCCCeeEEEEEEeCCCC
Q 008033 303 VVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKL-D----FSPSGICTIVQINDLKNS 377 (580)
Q Consensus 303 ~~~l~G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l-~----~~~~~i~~ivvIiDlkG~ 377 (580)
..+++|+|++||||+|+++|++|++++++.+ ...++++++++.+|.+++.+ . ..+..++++++|+||+|+
T Consensus 120 ~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~ 194 (320)
T 3q8g_A 120 PQYYHHVDKDGRPLYFAELGGINLKKMYKIT-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGI 194 (320)
T ss_dssp CEEEEEECTTCCEEEEEECTTCCHHHHHHHC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred CceecCCCCCcCEEEEEeccccCHHHhhccC-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCC
Confidence 3578999999999999999999998876532 25688999999999987431 1 113357889999999987
Q ss_pred CCCCchhH---HHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCC
Q 008033 378 PGPAKRDL---RIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPE 454 (580)
Q Consensus 378 s~ls~~~l---~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d 454 (580)
+ +.++ .++++.++.++|+|||+||+++||||+|++|.++|++++|||+++|++||+|+++ ++.+.|.++||++
T Consensus 195 s---l~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~ 270 (320)
T 3q8g_A 195 S---LSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQIPIE 270 (320)
T ss_dssp C---HHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHHSCGG
T ss_pred C---HHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhhCChh
Confidence 5 4443 4678999999999999999999999999999999999999999999999999986 5788999999999
Q ss_pred CccccCCCCCCCCC--CcccccC
Q 008033 455 QVPVQYGGLSREGE--QEFTTTD 475 (580)
Q Consensus 455 ~LP~eyGG~~~~~d--~e~~~~d 475 (580)
+||.+|||++++.+ ..|..+|
T Consensus 271 ~LP~~yGG~~~~~~~~ggc~~~~ 293 (320)
T 3q8g_A 271 NLPVKYGGTSVLHNPNDKFYYSD 293 (320)
T ss_dssp GSBGGGTSCBCCSSTTSCGGGBC
T ss_pred hCChhhCCCCCCCCCCCCeecCC
Confidence 99999999999854 4576544
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.3e-40 Score=344.68 Aligned_cols=216 Identities=20% Similarity=0.373 Sum_probs=181.9
Q ss_pred CChhHHHhhc--CCCCC-----------CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcC--CCCCccccccccc
Q 008033 236 VPPEKVFIWG--IPLLG-----------DDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFG--IDAVLEEDLGNDL 300 (580)
Q Consensus 236 ~~~~~~~~W~--~PlL~-----------~~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~--iD~i~~~~l~~el 300 (580)
+.+..|+.|+ +||++ ...||.+||||||||+||+++|.+||++|+.||+.++ .+++...++...+
T Consensus 60 ~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l 139 (316)
T 3hx3_A 60 EAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTI 139 (316)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHH
Confidence 4678999999 68863 4579999999999999999999999999999999987 2333322222222
Q ss_pred --ceeEeeeccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCC
Q 008033 301 --DKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSP 378 (580)
Q Consensus 301 --~k~~~l~G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s 378 (580)
...++++|+|++||||+|+++|++|++.+ +..++++++++++|.+++.. ..+++|+++|+||+|++
T Consensus 140 ~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~---------~~~~~~r~~~~~lE~~l~~~---~~~v~g~v~IiD~~g~s 207 (316)
T 3hx3_A 140 EAGYPGVLSSRDKYGRVVMLFNIENWQSQEI---------TFDEILQAYCFILEKLLENE---ETQINGFCIIENFKGFT 207 (316)
T ss_dssp HTTSSEECSSCCTTSCEEEEEECTTCCTTTS---------CHHHHHHHHHHHHHHHTTSH---HHHHHCEEEEEECTTCC
T ss_pred HcCCccccCCCCCCCCEEEEEecccCCCCCC---------CHHHHHHHHHHHHHHHHhcc---cCCcceEEEEEECCCCC
Confidence 23467899999999999999999998764 25789999999999986432 34678999999999875
Q ss_pred CCCchhH----HHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCC
Q 008033 379 GPAKRDL----RIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPE 454 (580)
Q Consensus 379 ~ls~~~l----~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d 454 (580)
+.++ .+.++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ +.+.|+++||++
T Consensus 208 ---l~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~--~~~~L~~~I~~~ 282 (316)
T 3hx3_A 208 ---MQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD--DLSGFYQEIDEN 282 (316)
T ss_dssp ---HHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET--CCHHHHHHSCGG
T ss_pred ---HHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC--CHHHHHhhCCHh
Confidence 4443 3578999999999999999999999999999999999999999999999999975 357899999999
Q ss_pred CccccCCCCCCCCC
Q 008033 455 QVPVQYGGLSREGE 468 (580)
Q Consensus 455 ~LP~eyGG~~~~~d 468 (580)
+||.+|||++++.+
T Consensus 283 ~LP~eyGG~~~~~d 296 (316)
T 3hx3_A 283 ILPSDFGGTLPKYD 296 (316)
T ss_dssp GSBGGGTSSBCCCC
T ss_pred hCcHhhCCCCCCcC
Confidence 99999999998764
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=9.8e-40 Score=328.94 Aligned_cols=214 Identities=23% Similarity=0.339 Sum_probs=178.1
Q ss_pred CChhHHHhhc----CCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcC-C-CCCccccccccc--ceeEeee
Q 008033 236 VPPEKVFIWG----IPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFG-I-DAVLEEDLGNDL--DKVVFMH 307 (580)
Q Consensus 236 ~~~~~~~~W~----~PlL~~~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~-i-D~i~~~~l~~el--~k~~~l~ 307 (580)
..+++++.|. .|+++...+|.+||||||||+||+++|.+||++|+.||+.++ + +++....+...+ ....+++
T Consensus 10 ~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~ 89 (262)
T 1r5l_A 10 PGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLR 89 (262)
T ss_dssp TTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECS
T ss_pred HHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCC
Confidence 4678899998 246677889999999999999999999999999999999986 2 222222221111 2245689
Q ss_pred ccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCCchhH--
Q 008033 308 GVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDL-- 385 (580)
Q Consensus 308 G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls~~~l-- 385 (580)
|+|++||||+|+++|++|++.+ +..+++++.++++|.+++... .++.|+++|+||+|++ +.++
T Consensus 90 g~D~~GrpV~i~~~~~~d~~~~---------~~~~~~r~~~~~~E~~~~~~~---~~~~g~~~I~D~~g~s---~~~~~~ 154 (262)
T 1r5l_A 90 SRDPTGSKVLIYRIAHWDPKVF---------TAYDVFRVSLITSELIVQEVE---TQRNGIKAIFDLEGWQ---FSHAFQ 154 (262)
T ss_dssp SCCTTCCEEEEEEGGGCCTTTS---------CHHHHHHHHHHHHHHHTTSHH---HHHHCEEEEEECTTCC---HHHHHH
T ss_pred CcCCCCCEEEEEeccccCcccC---------CHHHHHHHHHHHHHHHHhChh---hcccceEEEEECCCCC---HHHHhc
Confidence 9999999999999999998764 246789999999998764332 3467899999999875 4443
Q ss_pred --HHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCCCC
Q 008033 386 --RIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGL 463 (580)
Q Consensus 386 --~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyGG~ 463 (580)
.++++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|.++|| ++||.+|||+
T Consensus 155 ~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~ 232 (262)
T 1r5l_A 155 ITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGE 232 (262)
T ss_dssp CCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCS
T ss_pred cCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCC
Confidence 3678999999999999999999999999999999999999999999999999986 57899999999 9999999999
Q ss_pred CCC
Q 008033 464 SRE 466 (580)
Q Consensus 464 ~~~ 466 (580)
+.+
T Consensus 233 ~~~ 235 (262)
T 1r5l_A 233 EFS 235 (262)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.08 E-value=9.9e-11 Score=118.16 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=103.9
Q ss_pred eeEeeeccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCC
Q 008033 302 KVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPA 381 (580)
Q Consensus 302 k~~~l~G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls 381 (580)
+.++-.|.|++||||+++.+++++...+ +++.++.+.+..+++++ -..+.+|+|++|.+..+
T Consensus 11 ~ify~~G~d~dGrpViv~~~~~l~~~~~---------D~e~Ll~~vl~tl~~~~---------~~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 11 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSN 72 (256)
T ss_dssp TSEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGG
T ss_pred CCEEEcCcCCCCCEEEEEEeecCCCCCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEECCCCCccc
Confidence 3455668999999999999999986543 25566666666665443 12588999999986433
Q ss_pred chhHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHh-hcccCCccccceEEEeCCCcchhhhhcccCCCCcc
Q 008033 382 KRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRM-ISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVP 457 (580)
Q Consensus 382 ~~~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~l-IKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP 457 (580)
... .++++.+.+++-..|...|+++||+|+++||..+|+. .++|.+.+..+|+++++ +...|.++|+.++|.
T Consensus 73 ~p~-~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~---sl~eL~~~i~~~~L~ 145 (256)
T 3pg7_A 73 RFK-TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID---CPGKLAEHIEHEQQK 145 (256)
T ss_dssp CCC-HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES---STTGGGGTSCGGGCC
T ss_pred CCc-HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC---CHHHHHhhcCHHHcC
Confidence 333 6779999999999999999999999999999977665 46666668889999996 478999999877763
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=110.56 Aligned_cols=134 Identities=14% Similarity=0.163 Sum_probs=93.2
Q ss_pred eeEeeeccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCeeEEEEEEeCCCCCCCC
Q 008033 302 KVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPA 381 (580)
Q Consensus 302 k~~~l~G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~ivvIiDlkG~s~ls 381 (580)
+.++-.|.|++|+||+|+.+++++...+ +.+.++-+.+..+++.+ -..+.+|+|++|.+..+
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~~---------D~e~Lly~il~tl~~~~---------~~~y~lV~D~T~~~~~n 91 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSN 91 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGG
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEEcCCCCccC
Confidence 3455568999999999999999986443 24555555555554432 13688999999886322
Q ss_pred chhHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHH-HhhcccCCccccceEEEeCCCcchhhhhcccCCCCcc
Q 008033 382 KRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFN-RMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVP 457 (580)
Q Consensus 382 ~~~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw-~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP 457 (580)
... .++++.+.+++...|...++++||+|+++||...+ .+.++|.+.+..+|+.+++. ...|..+++.+++=
T Consensus 92 ~p~-~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~---~~~L~~~i~~~~~~ 164 (290)
T 3peg_A 92 RFK-TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQK 164 (290)
T ss_dssp CCC-HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS---SCC-----------
T ss_pred CCh-HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC---HHHHHhhCCHHHhc
Confidence 222 67889999999999999999999999999999855 57788888888999999864 34588999877543
No 8
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=63.00 E-value=46 Score=28.98 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=50.6
Q ss_pred CCCceeeecCCCceEEEeeecCCceEEEEEEEeecc------eeeeeEeccCCCCCceEEEecceeecCCCcccccCeEE
Q 008033 475 DPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWD------VSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFK 548 (580)
Q Consensus 475 d~~~~v~Ikag~k~~V~i~V~egs~L~WeF~t~~~D------I~Fgi~f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs~~ 548 (580)
|.-..++++.|....|.++-....-..|.+...... +..+-.|.+...++...- .+...+++.-. ..=.|+
T Consensus 10 ~n~~ti~l~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~l~~~~~~v~~~y~~~~~~~~~~~-~~~~~vG~gG~--~~~~fk 86 (121)
T 2cio_B 10 DNNKTIRMVIGETFTIELESNPTTGYTWLRSGLAGTELSDCTFAIQSKFNNRAPHDNHKN-HRRLLVGAGGT--MVLEVK 86 (121)
T ss_pred hCCcEEEEcCCCEEEEEeCCCCCCCeEEEEecCccccCCCccEEEeeeEEcCCCCccccc-ccccEeCCCce--EEEEEE
Confidence 344568999999888888766666789998773211 333334444322211000 11112332111 234577
Q ss_pred eCcCcEEEEEEEcCCC
Q 008033 549 IGEPGKVVLTIDNQSS 564 (580)
Q Consensus 549 ~~epG~yvL~fDNs~S 564 (580)
+..+|++.|.|....+
T Consensus 87 a~~~G~~~i~~~Y~Rp 102 (121)
T 2cio_B 87 ALKAGKHTLSLAYGRP 102 (121)
T ss_pred EecCceEEEEEEEECc
Confidence 8899999999988766
No 9
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=62.75 E-value=57 Score=27.87 Aligned_cols=92 Identities=8% Similarity=0.070 Sum_probs=54.7
Q ss_pred cCCCceeeecCCCceEEEeeecCCceEEEEEEEeecceeeeeE-eccCCCCCceEEEecceeecCCCcccccCeEEeCcC
Q 008033 474 TDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAE-FVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEP 552 (580)
Q Consensus 474 ~d~~~~v~Ikag~k~~V~i~V~egs~L~WeF~t~~~DI~Fgi~-f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs~~~~ep 552 (580)
+|.-+.++++.|....|.++-....-.+|.+...+.-+...-. |..... +...+++.- . ..=.|.+..+
T Consensus 12 ~d~g~~I~v~~Ge~~~I~L~~NptTGY~W~~~~~~~~~~l~~~~~~~~p~--------~~~~vG~gG-~-~~~~f~a~~~ 81 (111)
T 3m86_A 12 KEDHATLHISFNDLIKIQLRTNPSTGYAWNIEYPTDTFSLSQDTIKAEPH--------PSGMVGFPS-I-REIQLKPLKV 81 (111)
T ss_dssp GGTTCEEEECTTCEEEEEEEECGGGTCEEEEECCTTTEEEEEEEEEECCC--------STTTSSCSE-E-EEEEEEESSC
T ss_pred HHCCcEEEEcCCCEEEEEECCCCCCCeEEEEecCCCcEEEcccceEeCCC--------CCCCCCCCe-e-EEEEEEEeCC
Confidence 4555689999999999999876656689998765221221110 110000 011122110 0 1224678889
Q ss_pred cEEEEEEEcCCC------CceeEEEEEEe
Q 008033 553 GKVVLTIDNQSS------KKKKLLYRSKT 575 (580)
Q Consensus 553 G~yvL~fDNs~S------~sKkl~Y~i~v 575 (580)
|.+.|.|....+ -.++..|.|.|
T Consensus 82 G~~~i~~~Y~RpWe~~~~~~~tf~~~V~V 110 (111)
T 3m86_A 82 GTTTIKLGYSRPWEKGKEPLRSLTYSVVI 110 (111)
T ss_dssp EEEEEEEEEECTTCCSCCCSEEEEEEEEE
T ss_pred eEEEEEEEEECccCCCCCcccEEEEEEEE
Confidence 999999998766 36777777766
No 10
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=60.92 E-value=6.5 Score=34.83 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.2
Q ss_pred cCCCcccccCeEEeCcCcEEEEEEEc
Q 008033 536 APTDEPVICDTFKIGEPGKVVLTIDN 561 (580)
Q Consensus 536 ~~~~~p~~~Gs~~~~epG~yvL~fDN 561 (580)
+.+.-+ ..|.|.|+.||+|.+.|.=
T Consensus 30 G~~yn~-~TG~Ftap~~G~Y~Fs~~~ 54 (134)
T 2wnv_A 30 EEPYQN-HSGRFVCTVPGYYYFTFQV 54 (134)
T ss_dssp TSCEET-TTTEEECCSCEEEEEEEEE
T ss_pred CCCccC-CCCEEECeeCCEEEEEEEE
Confidence 344455 5999999999999999964
No 11
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=56.95 E-value=8.9 Score=33.84 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=19.6
Q ss_pred CCCcccccCeEEeCcCcEEEEEEEc
Q 008033 537 PTDEPVICDTFKIGEPGKVVLTIDN 561 (580)
Q Consensus 537 ~~~~p~~~Gs~~~~epG~yvL~fDN 561 (580)
.+.-+ ..|.|.|+.||+|.+.|.=
T Consensus 35 ~~yn~-~TG~Ftap~~G~Y~Fs~~~ 58 (131)
T 2wnv_C 35 GDYDT-STGKFTCKVPGLYYFVYHA 58 (131)
T ss_dssp CCEET-TTTEEECSSCEEEEEEEEE
T ss_pred CCccC-CCCEEEcccCCEEEEEEEE
Confidence 34445 5999999999999999963
No 12
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=56.74 E-value=9.1 Score=34.03 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=20.2
Q ss_pred cCCCcccccCeEEeCcCcEEEEEEEc
Q 008033 536 APTDEPVICDTFKIGEPGKVVLTIDN 561 (580)
Q Consensus 536 ~~~~~p~~~Gs~~~~epG~yvL~fDN 561 (580)
+.+.-+ ..|.|.|+.||+|.+.|.=
T Consensus 33 G~~yn~-~TG~Ftap~~G~Y~Fs~~~ 57 (136)
T 2wnv_B 33 NNNYEP-RSGKFTCKVPGLYYFTYHA 57 (136)
T ss_dssp TSCEET-TTTEEECSSCEEEEEEEEE
T ss_pred CCcccC-CCCEEECCcCeEEEEEEEE
Confidence 344455 6999999999999999963
No 13
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=55.65 E-value=9.2 Score=35.16 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=19.2
Q ss_pred CCcccccCeEEeCcCcEEEEEEEc
Q 008033 538 TDEPVICDTFKIGEPGKVVLTIDN 561 (580)
Q Consensus 538 ~~~p~~~Gs~~~~epG~yvL~fDN 561 (580)
+.-+ ..|.|.|+.+|+|.|.|.=
T Consensus 61 ~yn~-~TG~FtaPv~GvY~Fsft~ 83 (160)
T 1gr3_A 61 HYDP-RTGIFTCQIPGIYYFSYHV 83 (160)
T ss_dssp CEET-TTTEEECSSCEEEEEEEEE
T ss_pred ceeC-CCCEEEcccCCEEEEEEEE
Confidence 3445 5999999999999999973
No 14
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=52.48 E-value=23 Score=30.91 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=56.6
Q ss_pred CCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCC--eeEEEEEEeCCCCCCCCchhHHH
Q 008033 310 DKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSG--ICTIVQINDLKNSPGPAKRDLRI 387 (580)
Q Consensus 310 Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~~~~--i~~ivvIiDlkG~s~ls~~~l~~ 387 (580)
+..+..+.+...|.++ .++|-. ++-.++..++. .+. ++-++.+-|+.| +....++.
T Consensus 16 ~~~~~vl~v~~~G~lt--------------~~d~~~-l~~~l~~~l~~----~~~~~i~ll~~~~~f~G---~~~~a~~~ 73 (126)
T 2q3l_A 16 SQDDFYLAFKAVGKLT--------------HEDYEQ-MTPLLESALAG----IKTPEIVALIDITELDG---LSLHAAWD 73 (126)
T ss_dssp ETTEEEEEEEEEEEEC--------------HHHHHH-HHHHHHHHTTT----CCSSCEEEEEEEEEEEE---ECHHHHHH
T ss_pred cCCCCEEEEEEEeeEC--------------HHHHHH-HHHHHHHHHHh----CCCceEEEEEEecCCCC---CCHHHHHH
Confidence 3445555555556543 234433 44455554321 233 444444555554 44444444
Q ss_pred HHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEe
Q 008033 388 ATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFS 438 (580)
Q Consensus 388 ~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~ 438 (580)
-++..+ .|+ ..+.|+=||--+.|...+-+++++|++- .|+++
T Consensus 74 d~k~~~----~h~-~~~~RiAvV~d~~W~~~~~~~~~~~~~~----evk~F 115 (126)
T 2q3l_A 74 DLKLGL----KHG-KEFKRVAIIGQGELQEWATRVANWFTPG----EFKFF 115 (126)
T ss_dssp HHHHHH----HHG-GGEEEEEEECCSHHHHHHHHHHHHHCSS----EEEEE
T ss_pred HHHhhh----hHH-hcCCEEEEEcChHHHHHHHHHHhhccCC----ceecc
Confidence 443222 333 5788999999999999999999999765 45555
No 15
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=52.07 E-value=12 Score=35.01 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=19.5
Q ss_pred CCCcccccCeEEeCcCcEEEEEEEc
Q 008033 537 PTDEPVICDTFKIGEPGKVVLTIDN 561 (580)
Q Consensus 537 ~~~~p~~~Gs~~~~epG~yvL~fDN 561 (580)
.+..+ ..|.|.|+.+|+|.|.|.=
T Consensus 78 n~Yn~-~TG~FTaPv~GvY~Fsft~ 101 (178)
T 1o91_A 78 QNYNP-QTGIFTCEVPGVYYFAYHV 101 (178)
T ss_dssp TCEET-TTTEEECCSCEEEEEEEEE
T ss_pred CceeC-CCCEEEcccCeEEEEEEEE
Confidence 33445 5899999999999999973
No 16
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=43.15 E-value=84 Score=27.38 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=25.9
Q ss_pred ccCeEEeCcCcEEEEEEEcCCCCceeEEEEEEecC
Q 008033 543 ICDTFKIGEPGKVVLTIDNQSSKKKKLLYRSKTKP 577 (580)
Q Consensus 543 ~~Gs~~~~epG~yvL~fDNs~S~sKkl~Y~i~v~~ 577 (580)
+.|+|.+.+||+|.|..-+ ||. .+..|.+.|+.
T Consensus 85 ~~~~~~~~~pGkYYl~Vy~-y~~-~~g~Y~l~i~g 117 (121)
T 3jqw_A 85 LSGKFKADKPGRYYIHLYM-FNG-SYMPYRINIEG 117 (121)
T ss_dssp EEEEEEECSCEEEEEEEEE-EEC-SCEEEEEEEEE
T ss_pred EEEEEEeCCCeeEEEEEEE-ecC-CCccEEEEEEe
Confidence 5899999899999999876 442 25689888863
No 17
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=38.89 E-value=1.4e+02 Score=25.14 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=47.1
Q ss_pred eecCCCceEEEeeecCCceEEEEEEEeecceeeeeEeccCCCCCceEEEecceeecCCCcccccCeEEeCcCcEEEEEEE
Q 008033 481 VVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTID 560 (580)
Q Consensus 481 ~Ikag~k~~V~i~V~egs~L~WeF~t~~~DI~Fgi~f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs~~~~epG~yvL~fD 560 (580)
+|+.+....-.|....|.+|.=.+. ..+..|-+ +.|...... . .. . ...... .+.+...+..|.|.|..=
T Consensus 21 ~I~g~~~~~Y~~~a~aGQ~l~v~l~--s~~~~~~i-~~pg~~~~~--~-~~-~-~~~~~~--~~~~~~LP~sG~Y~I~V~ 90 (111)
T 4g9s_B 21 EIKGYDYDTYTFYAKKGQKVHVSIS--NEGADTYL-FGPGIDDSV--D-LS-R-YSPELD--SHGQYSLPASGKYELRVL 90 (111)
T ss_dssp EEETTCCEEEEEEECTTCEEEEEES--CTTCEEEE-ECTTCSSCE--E-CS-T-TCTTCC--TTSCEECSSSEEEEEEEE
T ss_pred EEeCCCceEEEEEecCCCEEEEEEe--cCCccEEE-ECCCCcccc--c-cc-c-ccccCC--ceEEEEecCCccEEEEEE
Confidence 4555666666666666776655443 34444443 223111110 0 00 0 111111 256677899999999986
Q ss_pred cC---CCCceeEEEEEEec
Q 008033 561 NQ---SSKKKKLLYRSKTK 576 (580)
Q Consensus 561 Ns---~S~sKkl~Y~i~v~ 576 (580)
.. ..+.+...|++.|.
T Consensus 91 ~~r~~ar~~~~~~Y~L~v~ 109 (111)
T 4g9s_B 91 QTRNDARKNKTKKYNVDIQ 109 (111)
T ss_dssp CCHHHHHTTCEEEEEEEEE
T ss_pred eccchhccCCCcCEEEEEE
Confidence 43 33888899998873
No 18
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.45 E-value=54 Score=25.06 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMIKN 278 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mLk~ 278 (580)
.+...+-.-|+++++|++.|+.+|.+
T Consensus 23 ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 47899999999999999999999864
No 19
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=38.38 E-value=29 Score=31.75 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.0
Q ss_pred CCCcccccCeEEeCcCcEEEEEEE
Q 008033 537 PTDEPVICDTFKIGEPGKVVLTID 560 (580)
Q Consensus 537 ~~~~p~~~Gs~~~~epG~yvL~fD 560 (580)
.+.-+ ..|.|.|+.||+|.|.|.
T Consensus 44 ~~yn~-~TG~FTaPv~GvY~Fsf~ 66 (162)
T 2ka3_A 44 GYYDP-ETGVFTAPLAGRYLLSAV 66 (162)
T ss_dssp CCEET-TTTEEECCCCEEEEEEEC
T ss_pred CceEC-CCCEEECCCCeEEEEEEE
Confidence 34445 599999999999999993
No 20
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.31 E-value=34 Score=27.36 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 008033 248 LLGDDRSDTILLKFLRARDFKVKDAFTMIKN 278 (580)
Q Consensus 248 lL~~~~tD~~LLRFLRArkfDVekA~~mLk~ 278 (580)
++|+ ..+.|+.+.|..+++|++.+...|-.
T Consensus 23 LfPd-LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 23 LLPD-LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HCCS-SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred Hccc-CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3453 68999999999999999999998854
No 21
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=31.34 E-value=1.4e+02 Score=26.40 Aligned_cols=80 Identities=6% Similarity=0.122 Sum_probs=47.0
Q ss_pred ccCCCceeeecCCCceEEEeeecCCceEEEEEEEeecc------eeeeeEeccCCCCCceEEEecceeecCCCcccccCe
Q 008033 473 TTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWD------VSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDT 546 (580)
Q Consensus 473 ~~d~~~~v~Ikag~k~~V~i~V~egs~L~WeF~t~~~D------I~Fgi~f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs 546 (580)
..|.-+.++++.|....|.++-....=..|.+...++. +.+.-.|.|...+ .+++.- . ..=.
T Consensus 28 ~~dn~~~I~v~~Ge~~~I~L~~NPTTGY~W~~~~~~~~~L~~~~~~v~~~y~p~~~~----------~vGagG-~-~~w~ 95 (131)
T 2h7w_A 28 KAHNGATLTVAVGELVEIQLPSNPTTGFAWYFEGGTKESPNESMFTVENKYFPPDSK----------LLGAGG-T-EHFH 95 (131)
T ss_dssp GGGTTCEEEECTTCEEEEEEEECGGGSCEEEBTTTBSSCSCTTTEEEEEEEECCTTC----------CTTCCE-E-EEEE
T ss_pred hhhCCCEEEEeCCCEEEEEeCCCCCCCeEEEEecCCCccccccceeecceeeeCCCC----------CcCCCc-E-EEEE
Confidence 34555789999999999888866655688988654321 0111112221111 111110 0 1224
Q ss_pred EEeCcCcEEEEEEEcCCC
Q 008033 547 FKIGEPGKVVLTIDNQSS 564 (580)
Q Consensus 547 ~~~~epG~yvL~fDNs~S 564 (580)
|++..+|.+.|+|....+
T Consensus 96 f~A~~~G~~~i~~~Y~Rp 113 (131)
T 2h7w_A 96 VTVKAAGTHAVNLTYMRP 113 (131)
T ss_dssp EEECSSEEEEEEEEEECT
T ss_pred EEEccCceEEEEEEEECc
Confidence 678889999999998655
No 22
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=29.18 E-value=2.9e+02 Score=24.21 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=53.1
Q ss_pred CCCceeeecCCCceEEEeeecCCceEEEEEEEeecce-e-eee-EeccCCCCCceEEEecceeecCCCcccccCeEEeCc
Q 008033 475 DPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDV-S-YGA-EFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGE 551 (580)
Q Consensus 475 d~~~~v~Ikag~k~~V~i~V~egs~L~WeF~t~~~DI-~-Fgi-~f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs~~~~e 551 (580)
|.-+.++++.|....|.++-....-.+|.+...++.+ . .+- +|.+... +...+++.-. ..=.|.+..
T Consensus 32 ~~g~tI~v~~Ge~~~I~L~~NPTTGY~W~~~~~~~~vl~~l~~~~y~~~~~--------~~~~vGagG~--~~w~f~A~~ 101 (132)
T 2wgn_B 32 DDCSPLKLTQGQELVLTLPSNPTTGFRWELRNPAASVLKRLGPEVYSNSEE--------DSGLVGSGGE--STWRFRVAA 101 (132)
T ss_dssp SCCSCEEECTTCEEEEEECCCTTTSCEEEEEECCTTTEEECCSCCSCSSCS--------SCCCSSSSCC--EEEEEEECS
T ss_pred cCCcEEEEcCCCEEEEEeCCCCCCCeEEEEecCCCceEEecccceecCCCC--------ccCCcCCCce--EEEEEEEcC
Confidence 3445799999999988888666566899987653321 1 121 1222100 0111222111 123577888
Q ss_pred CcEEEEEEEcCCC------CceeEEEEEEe
Q 008033 552 PGKVVLTIDNQSS------KKKKLLYRSKT 575 (580)
Q Consensus 552 pG~yvL~fDNs~S------~sKkl~Y~i~v 575 (580)
+|.+.|+|....+ ..++..+.|.|
T Consensus 102 ~G~~~i~~~Y~RpWE~~~~~~~~F~l~V~V 131 (132)
T 2wgn_B 102 SGDDRLELVYRRPWEKDAEPAESFSCAIQV 131 (132)
T ss_dssp CEEEEEEEEEECTTSSSCCCSSEEEEEEEE
T ss_pred CceEEEEEEEECccCCCCCcceEEEEEEEE
Confidence 9999999998766 23555555555
No 23
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=28.66 E-value=49 Score=28.52 Aligned_cols=83 Identities=4% Similarity=0.024 Sum_probs=46.8
Q ss_pred ecCCCceEEEeeecCCceEEEEEEEeecceeeeeEeccCCCCCceEEEecceeecCCCcccccCeE--EeCcCcEEEEEE
Q 008033 482 VKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTF--KIGEPGKVVLTI 559 (580)
Q Consensus 482 Ikag~k~~V~i~V~egs~L~WeF~t~~~DI~Fgi~f~~~~~~~~~~iV~~~~r~~~~~~p~~~Gs~--~~~epG~yvL~f 559 (580)
|.++....-.|.+..|..|.=.+ ..+.++-|.|+ .|..+... .+. +++. . ..+++ ..+..|.|.|..
T Consensus 24 I~g~~~~~Y~~~a~aGQ~l~V~l-s~~~~~~f~I~-~P~~~~~~--~l~----~g~~--~-~~~~~~g~LP~sG~Y~i~V 92 (114)
T 4dzg_A 24 FTGYDTIHYTLVAXAGQTMTVXI-GGSSNANFNVF-APGAQPGQ--AEA----IGRN--D-GDGQWQGALPASGXYLIQV 92 (114)
T ss_dssp CBTTCCEEEECCC-CCCEEEC-C-EESTTCEEEEE-CTTCCTTT--SCC----SEEC--C-TTSCCEEECSSCC-CEEEE
T ss_pred ecCCCceEEEEEecCCCEEEEEe-CCCCcEEEEEE-CCCCCccc--cee----cccc--C-CcceEEEEecCCCcEEEEE
Confidence 55555555566666677777666 44567777764 34222110 000 1110 1 12344 679999999998
Q ss_pred EcCCC---CceeEEEEEEe
Q 008033 560 DNQSS---KKKKLLYRSKT 575 (580)
Q Consensus 560 DNs~S---~sKkl~Y~i~v 575 (580)
-.... +.+...|++.|
T Consensus 93 ~~~r~~ar~~~~~~Y~L~i 111 (114)
T 4dzg_A 93 YQMRASARRGEQVPHSLAV 111 (114)
T ss_dssp ECCHHHHHTTCBCCEECEE
T ss_pred EeccchhccCCCCCeEEEE
Confidence 87654 77788898876
No 24
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=27.64 E-value=2.3e+02 Score=24.58 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=23.8
Q ss_pred ccCeEEeCcCcEEEEEEEcCCCCceeEEEEEEec
Q 008033 543 ICDTFKIGEPGKVVLTIDNQSSKKKKLLYRSKTK 576 (580)
Q Consensus 543 ~~Gs~~~~epG~yvL~fDNs~S~sKkl~Y~i~v~ 576 (580)
+.|+|.+. ||+|.|.+... +....|.+.|+
T Consensus 89 ~~~~~~~~-pGkYYl~Vy~y---~~~g~Y~l~v~ 118 (119)
T 1nqj_A 89 VSNKVKLR-PGKYYLLVYKY---SGSGNYELRVN 118 (119)
T ss_dssp EEEEEEEC-SEEEEEEEEEE---ESCEEEEEEEE
T ss_pred EEEEEEcC-CcEEEEEEEEe---CCCceEEEEEe
Confidence 46888886 99999998763 45688888875
No 25
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=27.60 E-value=63 Score=21.86 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=18.5
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 008033 254 SDTILLKFLRARDFKVKDAFTMI 276 (580)
Q Consensus 254 tD~~LLRFLRArkfDVekA~~mL 276 (580)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44566889999999999998765
No 26
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=26.92 E-value=2.3e+02 Score=24.57 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=58.8
Q ss_pred CCccccceEEEeCCCcchhhhhcccCCCCcccc-CCCCCCCCCCcccccCCCceeeecCCCceEEEeeecC---CceEEE
Q 008033 427 LTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQ-YGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTE---RSILVW 502 (580)
Q Consensus 427 L~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~e-yGG~~~~~d~e~~~~d~~~~v~Ikag~k~~V~i~V~e---gs~L~W 502 (580)
|++.++=.+..+.+....+++.=|||-+..|+. |-|....+. .+-+-++..|+ -.|.|.|.. .|.|+.
T Consensus 9 LP~ni~Fg~ta~~Nsa~~QtikvyIdd~~~~~aT~~g~gt~d~-------~~~t~~lnSg~-GkVriev~~nGkps~l~s 80 (116)
T 2xr4_A 9 LPPHIKFGVTALTHAANDQTIDIYIDDDPKPAATFKGAGAQDQ-------NLGTKVLDSGN-GRVRVIVMANGRPSRLGS 80 (116)
T ss_dssp CCTTCEEEEEEEECSCSCCEEEEEETTCSSCSEEECCCSSTTE-------EEEEEEEECTT-SEEEEEEEETTEECEEEE
T ss_pred CCCCcEEeEEEEeccCCceeEEEEeCCCCccceeeeccCcCCC-------ccceEEEecCC-CeEEEEEEeCCcccccee
Confidence 788888888887766677888889998888887 877655321 11122233332 455566654 478988
Q ss_pred EEEEeecceeeeeEecc
Q 008033 503 ELRVLGWDVSYGAEFVP 519 (580)
Q Consensus 503 eF~t~~~DI~Fgi~f~~ 519 (580)
...+..+-.+|+|.-..
T Consensus 81 ~~~~l~~k~~~~iigae 97 (116)
T 2xr4_A 81 RQVDIFKKSYFGIIGSE 97 (116)
T ss_dssp EEEEETTTEEEEEEEEE
T ss_pred eeeeccCCccEEEEEcc
Confidence 87777889999997653
No 27
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=26.23 E-value=78 Score=26.00 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 008033 249 LGDDRSDTILLKFLRARDFKVKDAFTMIKNT 279 (580)
Q Consensus 249 L~~~~tD~~LLRFLRArkfDVekA~~mLk~~ 279 (580)
+.+...|..|.+-...++||+++|+..+-+.
T Consensus 45 lGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 45 LGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 6777899999999999999999999998654
No 28
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=25.38 E-value=45 Score=35.58 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=19.1
Q ss_pred CCcccccCeEEeCcCcEEEEEEEc
Q 008033 538 TDEPVICDTFKIGEPGKVVLTIDN 561 (580)
Q Consensus 538 ~~~p~~~Gs~~~~epG~yvL~fDN 561 (580)
+..+ ..|.|.|+.||+|.+.|.=
T Consensus 56 ~yn~-~TG~Ftapv~GvY~Fsf~~ 78 (442)
T 4dou_A 56 HYDG-STGKFHCNIPGLYYFAYHI 78 (442)
T ss_dssp CEET-TTTEEECCSCEEEEEEEEE
T ss_pred CcCC-CCCEEeCCCCEEEEEEEEE
Confidence 3345 5899999999999999964
No 29
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=25.09 E-value=52 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.4
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 008033 254 SDTILLKFLRARDFKVKDAFTMI 276 (580)
Q Consensus 254 tD~~LLRFLRArkfDVekA~~mL 276 (580)
+......||.+++||++.|+..+
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 67888999999999999998765
No 30
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.23 E-value=83 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=21.7
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHHH
Q 008033 254 SDTILLKFLRARDFKVKDAFTMIKNT 279 (580)
Q Consensus 254 tD~~LLRFLRArkfDVekA~~mLk~~ 279 (580)
++...++-|++.++|+++|...|..+
T Consensus 23 d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 23 NREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44556999999999999999988764
No 31
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=24.23 E-value=45 Score=35.55 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=19.9
Q ss_pred CCcccccCeEEeCcCcEEEEEEEcC
Q 008033 538 TDEPVICDTFKIGEPGKVVLTIDNQ 562 (580)
Q Consensus 538 ~~~p~~~Gs~~~~epG~yvL~fDNs 562 (580)
+-.+ ..|.|.|+.||+|.|.|.=+
T Consensus 197 ~Yn~-~TG~Ftcpv~GvY~Fs~~~~ 220 (442)
T 4dou_A 197 HYDG-STGKFHCNIPGLYYFAYHIT 220 (442)
T ss_dssp CEET-TTTEEECCSCEEEEEEEEEE
T ss_pred CccC-CCCeEeCccceEEEEEEEEE
Confidence 3345 68999999999999999843
No 32
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=23.70 E-value=41 Score=29.96 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.7
Q ss_pred CCCcccccCeEEeCcCcEEEEEEE
Q 008033 537 PTDEPVICDTFKIGEPGKVVLTID 560 (580)
Q Consensus 537 ~~~~p~~~Gs~~~~epG~yvL~fD 560 (580)
.+--+ -.|.|.|+.+|+|.|.|.
T Consensus 33 ~~yn~-sTG~FTaPv~G~Y~Fs~~ 55 (148)
T 4f3j_A 33 GHYDA-VTGKFTCQVPGVYYFAVH 55 (148)
T ss_dssp CCEET-TTTEEECCSCEEEEEEEE
T ss_pred CCccC-CCCeEECCcceEEEEEEE
Confidence 34445 589999999999999985
No 33
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.20 E-value=71 Score=24.29 Aligned_cols=27 Identities=19% Similarity=0.012 Sum_probs=22.4
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMIKNT 279 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mLk~~ 279 (580)
.++...++-|++.++|+++|.+.|.++
T Consensus 30 ~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 355677999999999999999988653
No 34
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.73 E-value=73 Score=25.08 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=22.4
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMIKNT 279 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mLk~~ 279 (580)
.++...+|-|++.++|+++|++.|.++
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455666999999999999999988654
No 35
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=22.65 E-value=78 Score=23.34 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.3
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMIKNT 279 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mLk~~ 279 (580)
.+-..+.+.|+.+++|+++|..+|.+.
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 466788999999999999999998654
No 36
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.36 E-value=76 Score=24.23 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.9
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMI 276 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mL 276 (580)
.+......||.+++||++.|+..+
T Consensus 28 ~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 28 ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 357888999999999999998776
No 37
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=21.76 E-value=61 Score=24.30 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=21.9
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMIK 277 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mLk 277 (580)
+.-.||-|.|.+.++|+.+|+..|.
T Consensus 24 negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 24 DEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccccHHHHHHHHccCCHHHHHHHhh
Confidence 3457999999999999999999875
No 38
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=21.66 E-value=86 Score=22.55 Aligned_cols=25 Identities=16% Similarity=-0.023 Sum_probs=20.9
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 008033 253 RSDTILLKFLRARDFKVKDAFTMIK 277 (580)
Q Consensus 253 ~tD~~LLRFLRArkfDVekA~~mLk 277 (580)
.++.-.++-|++.++|+++|...|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456679999999999999998874
No 39
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=21.07 E-value=72 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=21.5
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHH
Q 008033 254 SDTILLKFLRARDFKVKDAFTMIKN 278 (580)
Q Consensus 254 tD~~LLRFLRArkfDVekA~~mLk~ 278 (580)
+....++-|+++++|+++|.+.|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6677789999999999999988865
No 40
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=20.90 E-value=1e+02 Score=27.16 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=24.6
Q ss_pred eEEEEEEeCCCCCCCCchhHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHh
Q 008033 366 CTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRM 422 (580)
Q Consensus 366 ~~ivvIiDlkG~s~ls~~~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~l 422 (580)
.+++++.|| |.+. +. . .+.+... .+ ++.|||.|.+..++...
T Consensus 59 dgVlvltDL-Ggsp--~N----~---~~al~~~-~~----~v~viNlPmvega~~aa 100 (131)
T 3ct6_A 59 DNLLTFFDL-GSAR--MN----L---DLVSEMT-DK----ELTIFNVPLIEGAYTAS 100 (131)
T ss_dssp SEEEEEESS-GGGH--HH----H---HHHHHTC-SS----EEEECCSCHHHHHHHHH
T ss_pred CCEEEEEeC-CCCh--HH----H---HHHHHhc-CC----CEEEEEhhHHHHHHHHH
Confidence 589999999 5431 11 1 1111111 12 78888999996666543
Done!