Query 008034
Match_columns 580
No_of_seqs 337 out of 1090
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 18:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 2E-141 3E-146 1154.7 41.6 560 1-566 1-619 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 2E-96 4E-101 817.4 22.3 347 44-553 461-842 (1080)
3 smart00128 IPPc Inositol polyp 100.0 1.2E-80 2.6E-85 645.2 28.5 297 90-548 2-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 3.2E-68 6.9E-73 559.2 18.1 306 82-550 21-334 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 2E-31 4.4E-36 269.7 11.1 175 353-540 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 1.9E-28 4.1E-33 228.0 12.3 142 311-456 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 1.5E-18 3.2E-23 176.7 5.3 166 353-543 154-389 (391)
8 TIGR03395 sphingomy sphingomye 98.1 4.4E-05 9.5E-10 79.3 14.2 148 351-539 116-282 (283)
9 PF03372 Exo_endo_phos: Endonu 98.1 1.2E-06 2.6E-11 83.3 2.4 97 321-435 72-171 (249)
10 PRK05421 hypothetical protein; 98.1 2.7E-05 5.9E-10 79.6 12.1 127 356-543 135-262 (263)
11 TIGR00633 xth exodeoxyribonucl 97.0 0.0069 1.5E-07 60.3 11.4 35 94-132 2-37 (255)
12 COG3568 ElsH Metal-dependent h 96.8 0.0075 1.6E-07 62.3 10.4 60 356-435 119-186 (259)
13 PRK11756 exonuclease III; Prov 96.7 0.014 3E-07 59.4 10.8 27 355-381 88-114 (268)
14 PTZ00297 pantothenate kinase; 95.7 0.057 1.2E-06 67.6 11.4 72 353-431 130-206 (1452)
15 PRK13911 exodeoxyribonuclease 95.0 0.36 7.9E-06 49.5 12.8 34 95-131 3-36 (250)
16 TIGR00195 exoDNase_III exodeox 92.6 0.66 1.4E-05 46.7 9.3 33 95-131 3-35 (254)
17 PF14529 Exo_endo_phos_2: Endo 89.4 0.13 2.8E-06 45.0 0.4 33 505-537 86-119 (119)
18 PRK13911 exodeoxyribonuclease 88.5 0.21 4.6E-06 51.1 1.4 55 358-431 89-147 (250)
19 COG0708 XthA Exonuclease III [ 85.7 0.15 3.3E-06 52.9 -1.4 33 95-131 3-35 (261)
20 KOG2338 Transcriptional effect 81.6 2.4 5.2E-05 47.6 5.5 74 345-431 226-303 (495)
21 KOG2756 Predicted Mg2+-depende 80.8 6.1 0.00013 41.6 7.8 62 360-434 196-257 (349)
22 KOG3873 Sphingomyelinase famil 77.8 7.3 0.00016 42.5 7.5 201 315-547 73-297 (422)
23 PF03372 Exo_endo_phos: Endonu 74.6 0.69 1.5E-05 43.8 -1.0 35 96-133 1-40 (249)
24 smart00476 DNaseIc deoxyribonu 73.3 16 0.00035 38.3 8.6 24 357-380 128-154 (276)
25 PRK11756 exonuclease III; Prov 69.4 1.3 2.9E-05 44.9 -0.4 32 95-131 3-35 (268)
26 PLN03144 Carbon catabolite rep 69.0 8.2 0.00018 44.8 5.7 63 368-448 417-480 (606)
27 COG3021 Uncharacterized protei 62.2 4.6 0.0001 43.1 1.9 59 354-431 173-233 (309)
28 TIGR00633 xth exodeoxyribonucl 58.5 4.2 9.1E-05 40.4 0.8 53 368-433 100-154 (255)
29 PRK15251 cytolethal distending 57.7 8.3 0.00018 40.5 2.8 37 94-132 26-66 (271)
30 TIGR00195 exoDNase_III exodeox 56.8 4 8.8E-05 41.0 0.4 13 369-381 98-110 (254)
31 PRK15251 cytolethal distending 41.6 58 0.0013 34.3 6.0 55 354-430 140-194 (271)
32 COG5329 Phosphoinositide polyp 40.6 6.9 0.00015 44.8 -1.0 85 44-131 455-569 (570)
33 PRK05421 hypothetical protein; 35.0 23 0.00051 36.2 1.9 35 93-132 44-79 (263)
34 KOG3870 Uncharacterized conser 34.8 17 0.00036 40.2 0.8 17 417-433 349-365 (434)
35 COG3021 Uncharacterized protei 32.2 1E+02 0.0022 33.2 6.0 33 508-542 275-307 (309)
36 PF07494 Reg_prop: Two compone 29.6 22 0.00048 23.5 0.5 9 91-99 16-24 (24)
37 PRK10947 global DNA-binding tr 26.2 38 0.00083 32.1 1.6 24 478-508 93-119 (135)
38 cd01251 PH_centaurin_alpha Cen 24.0 66 0.0014 28.4 2.6 34 127-161 69-102 (103)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.6e-141 Score=1154.73 Aligned_cols=560 Identities=40% Similarity=0.697 Sum_probs=447.5
Q ss_pred CCCcCCccccccchHHHHHhhhccCCCCcccccCCCCCCCCCccc---ccc---CcCCCCccccCc----------cccc
Q 008034 1 MRDGNSKKSKLSWSKKMVRKWFNIKSKTEEFQADDPVYGGGDQVE---YRT---SFSEREPCTIKK----------SKTE 64 (580)
Q Consensus 1 m~~~~~~~~~~~w~~~v~~Kwln~~~~~~~f~aD~~~~~~~~~~~---~~~---s~~~~~~~~~~~----------~~~~ 64 (580)
||++++|++|+||||+||||||||++|++||+||+.+++.+++.+ .+. .+.+.-...... .+..
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 999999999999999999999999999999999987653222111 111 111110000000 0011
Q ss_pred cccCC-CccccccccCCCCCCcceeeeEEEEEEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEeeEecCCCCccccC
Q 008034 65 KFSKS-GEPVRRGRMNLDHPRIIDVQNHSVFVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEIVPLNAGNVLGAE 143 (580)
Q Consensus 65 ~~~~~-~~~~r~~~~~~~~~~~i~~~~~ri~VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEiVpLNAgNVlgaE 143 (580)
..+++ .+++||+++||+|+|||+++++|||||||||||+.|+.+|+|++||++++||||||||||||||||||||||+|
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 22345 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCc-----cccccccccc-cccccCccccc------------cccc
Q 008034 144 DNGPAKKWLALIRKTLNSLPGTSGSSGCYTQSPIPEP-----IVEMDADFEG-SARRMNSSFFH------------RRSF 205 (580)
Q Consensus 144 D~~p~~kWe~lIr~~LN~~~~~~~~~~~~~~sp~~~~-----~~~~d~~~~~-~~~~~~~~~~~------------~~~~ 205 (580)
|+.|+++|+.+|++|||+.++...+++|||+||+|.. ..|++.++++ +.++.+..|++ .+.|
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~~~~~~~~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVLRTSIVADELAEEVDSLPLEMMNNEFIDAATGCPSLEPERNKNI 240 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCcccCCcchhhhhhhhcccChhhhcccccccccccccccchhhcccc
Confidence 9999999999999999999888888889998888753 1145555555 44555555655 1223
Q ss_pred ccc-ccccCCCCCCCCCcccccccccccccccC--CCCCCCCCC--------CcCCCCCCCCCCCC---------CCCCC
Q 008034 206 QTT-HSWKMDNDPSIPQPRLDRRFSVCDRVIFG--HRPSDYDPS--------FRWGHRPSDYSRPS---------DYSRP 265 (580)
Q Consensus 206 ~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~---------~~~~~ 265 (580)
..+ ++++++++.+.++++|+|+||+|+|++++ +.|.++.+. ++.++++.++++.. +.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 320 (621)
T PLN03191 241 GWPEHSLDATPQVVSSNSKLRRVFSSSARLGFKWPENPSLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVP 320 (621)
T ss_pred CCcccccccCcccccccccceeeeccccccccCCCCCccccCchhhcccccccchhhhccccccccccchhhcccccccc
Confidence 333 66788888778899999999999999887 455544322 33455555554332 23333
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccCCCCCCeEEEEeeeecceeEeeeeeccccccccceEEeEE
Q 008034 266 SDYSRWGSSDDDNGPGDSPSTVLYSPMSYSGSGSMEHGYRMPGNSRYCLVASKQMVGIFLTVWVRSELRDHVKNMKVSCV 345 (580)
Q Consensus 266 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~s~qmvGi~L~Vfvr~~l~~~I~~v~~s~V 345 (580)
+++ +|.++.++....+....+.+++.................+|++|.|+|||||+|+||||++++++|++|++++|
T Consensus 321 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V 397 (621)
T PLN03191 321 EVI---DSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPV 397 (621)
T ss_pred ccc---ccccccccccCCCcccccccCChhhhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeE
Confidence 333 22211111111111222344432110011111223357899999999999999999999999999999999999
Q ss_pred eecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEE
Q 008034 346 GRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIW 425 (580)
Q Consensus 346 ~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw 425 (580)
+||+||++||||||+|||.|++|+|||||||||||++++++++||+|+.+|++++.|+..... ..+.+|.+||+|||
T Consensus 398 ~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~---~~~~~I~dhD~vFW 474 (621)
T PLN03191 398 GVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDT---DQPQTIPSHDQIFW 474 (621)
T ss_pred eeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCccccc---CCCccccccceEEE
Confidence 999999999999999999999999999999999999888889999999999999999864322 24678999999999
Q ss_pred eccccceeecChHHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCCCcccccccCCCCCcCCCCCCCCCCCCCCCCCccCC
Q 008034 426 LGDLNYRIALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTP 505 (580)
Q Consensus 426 ~GDLNYRI~l~~~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Yd~~~~~~s~K~R~P 505 (580)
||||||||++++++++++|++++|++||++|||+.|+++|++|.||+||+|+|||||||+.|++.|++++.++++|+|+|
T Consensus 475 lGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~P 554 (621)
T PLN03191 475 FGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSP 554 (621)
T ss_pred ecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCCccccccccccccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777789999999
Q ss_pred ccccceeeecCCceeeeeeccccCcCCCcCceeEEEEEEEechh-hhhccccccccc---ccccc
Q 008034 506 AWCDRILWYGEGLHQLSYVRGESRFSDHRPVYGIFWAEVESSHN-RLKKSISYSSSR---IEVEE 566 (580)
Q Consensus 506 SWCDRIL~~~~~l~ql~Y~~~e~~~SDHrPV~A~F~v~v~~~~~-~~k~~~~~~~~~---~~~e~ 566 (580)
||||||||++++++++.|.+.++++||||||+|+|.++|+++++ +++++++++++. ++.|.
T Consensus 555 SWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~~~~~a~~~~~~~~~ 619 (621)
T PLN03191 555 AWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDHRKLQRALNVNSAAASAVHPEP 619 (621)
T ss_pred chhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCHHHHHhhhhcchhhhhccCCcc
Confidence 99999999999999999999999999999999999999999764 668888888766 55543
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-96 Score=817.37 Aligned_cols=347 Identities=42% Similarity=0.723 Sum_probs=322.5
Q ss_pred cccccCcCCCCccccCccccccccCC-CccccccccCCCCC----------------------------CcceeeeEEEE
Q 008034 44 VEYRTSFSEREPCTIKKSKTEKFSKS-GEPVRRGRMNLDHP----------------------------RIIDVQNHSVF 94 (580)
Q Consensus 44 ~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~----------------------------~~i~~~~~ri~ 94 (580)
++.++++++....++.+|.++-++++ .++.+|..+++|.. .|+..++|+||
T Consensus 461 gAlk~s~trG~L~D~skS~~R~y~nnf~D~~kQeaIdlLLg~l~~~q~~v~L~dpv~~yv~~~L~er~~eyt~~k~i~If 540 (1080)
T KOG0566|consen 461 GALKSSATRGKLKDASKSVTRTYQNNFMDKEKQEAIDLLLGRLPSAQSAVILYDPVHEYVLKELRERRSEYTEPKDISIF 540 (1080)
T ss_pred ccccccccccchhhhhHHHHHHHhccccchhhHHHHHHHHhcCccccchhhhcCchhHHHHHHHHHhhhhhccccceEEE
Confidence 56778887766678888888889999 99999999888766 26788999999
Q ss_pred EEEeecCCCCCCCCCCcccccCCC------CCCcEEEEeeEeeEecCCCCccccCCCCchHHHHHHHHHHhcCCCCCCCC
Q 008034 95 VATWNVAGRSPPSNLSLDDWLHAS------PPADIYVLGFQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLNSLPGTSGS 168 (580)
Q Consensus 95 VGTWNVgGk~P~~dldLddWL~~~------~~~DIyvvGfQEiVpLNAgNVlgaED~~p~~kWe~lIr~~LN~~~~~~~~ 168 (580)
||||||||+.+.-.-||.+||++. .+||||||||||||.||||||+.| |+....-||..|.++||+.
T Consensus 541 vgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~A-s~tk~~~Wee~i~~~Ln~~------ 613 (1080)
T KOG0566|consen 541 VGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSA-STTKRRFWEEKILKTLNRY------ 613 (1080)
T ss_pred EEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceecc-ChHHHHHHHHHHHHHhcCC------
Confidence 999999998877778999999865 379999999999999999999999 8899999999999999952
Q ss_pred CCCcCCCCCCCccccccccccccccccCccccccccccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCCCc
Q 008034 169 SGCYTQSPIPEPIVEMDADFEGSARRMNSSFFHRRSFQTTHSWKMDNDPSIPQPRLDRRFSVCDRVIFGHRPSDYDPSFR 248 (580)
Q Consensus 169 ~~~~~~sp~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 248 (580)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccCCCCCCeEEEEeeeecceeEeee
Q 008034 249 WGHRPSDYSRPSDYSRPSDYSRWGSSDDDNGPGDSPSTVLYSPMSYSGSGSMEHGYRMPGNSRYCLVASKQMVGIFLTVW 328 (580)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~s~qmvGi~L~Vf 328 (580)
..+|+++.|.||||++|+||
T Consensus 614 ------------------------------------------------------------~~kYvlL~s~QlvGv~L~iF 633 (1080)
T KOG0566|consen 614 ------------------------------------------------------------KNKYVLLRSEQLVGVCLLLF 633 (1080)
T ss_pred ------------------------------------------------------------CCceEEEehhhhheeeEEEE
Confidence 12699999999999999999
Q ss_pred eeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCC
Q 008034 329 VRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSA 408 (580)
Q Consensus 329 vr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~ 408 (580)
+|.++.++|++|.+++++||++|..||||||+|||.++.|+|||||+|||||+.+.+ .||.||.+|.++++||+.
T Consensus 634 ~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~--ERn~DY~tI~r~l~Fp~G--- 708 (1080)
T KOG0566|consen 634 IRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVE--ERNEDYKTIARKLRFPRG--- 708 (1080)
T ss_pred EcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccchHh--hhhhhHHHHHHhccccCC---
Confidence 999999999999999999999999999999999999999999999999999998755 499999999999999973
Q ss_pred CCCCCCccccccceEEEeccccceeecChHHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCCCcccccccCCCCCcCCCC
Q 008034 409 GDEKSPETILQHDRVIWLGDLNYRIALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYSTNS 488 (580)
Q Consensus 409 ~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~s 488 (580)
.+|.+||+|||||||||||+|++++|+.+|.+++|+.|+++|||+.||.+|.+|.||.|++|+|+||||||.||
T Consensus 709 ------r~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gT 782 (1080)
T KOG0566|consen 709 ------RMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGT 782 (1080)
T ss_pred ------ccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccCCccccceeeecCCceeeeeeccccCcCCCcCceeEEEEEEEechhhhhc
Q 008034 489 DRYAGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGESRFSDHRPVYGIFWAEVESSHNRLKK 553 (580)
Q Consensus 489 d~Yd~~~~~~s~K~R~PSWCDRIL~~~~~l~ql~Y~~~e~~~SDHrPV~A~F~v~v~~~~~~~k~ 553 (580)
+.||| |+|+|+|||||||||++..+.+++|.++|+++||||||+|+|.++|..++++.|.
T Consensus 783 d~YDT-----SeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~ 842 (1080)
T KOG0566|consen 783 DDYDT-----SEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKL 842 (1080)
T ss_pred Ccccc-----chhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHH
Confidence 99995 9999999999999999999999999999999999999999999999999876543
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.2e-80 Score=645.24 Aligned_cols=297 Identities=39% Similarity=0.721 Sum_probs=268.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCcccccCCC------CCCcEEEEeeEeeEecCCCCccccCCCCchHHHHHHHHHHhcCCC
Q 008034 90 NHSVFVATWNVAGRSPPSNLSLDDWLHAS------PPADIYVLGFQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLNSLP 163 (580)
Q Consensus 90 ~~ri~VGTWNVgGk~P~~dldLddWL~~~------~~~DIyvvGfQEiVpLNAgNVlgaED~~p~~kWe~lIr~~LN~~~ 163 (580)
+++|||+||||||+.+++..+|.+||... .+||||||||||||++++++++.. ++.....|.++|..+|+.
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~-~~~~~~~W~~~i~~~l~~-- 78 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLET-IAGKERLWSKLIESSLNG-- 78 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhc-cchhHHHHHHHHHHhcCC--
Confidence 58999999999998644557899999752 579999999999999999999864 778899999999988862
Q ss_pred CCCCCCCCcCCCCCCCccccccccccccccccCccccccccccccccccCCCCCCCCCcccccccccccccccCCCCCCC
Q 008034 164 GTSGSSGCYTQSPIPEPIVEMDADFEGSARRMNSSFFHRRSFQTTHSWKMDNDPSIPQPRLDRRFSVCDRVIFGHRPSDY 243 (580)
Q Consensus 164 ~~~~~~~~~~~sp~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 243 (580)
T Consensus 79 -------------------------------------------------------------------------------- 78 (310)
T smart00128 79 -------------------------------------------------------------------------------- 78 (310)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccCCCCCCeEEEEeeeecce
Q 008034 244 DPSFRWGHRPSDYSRPSDYSRPSDYSRWGSSDDDNGPGDSPSTVLYSPMSYSGSGSMEHGYRMPGNSRYCLVASKQMVGI 323 (580)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~s~qmvGi 323 (580)
+.+|++|++.+|+||
T Consensus 79 -----------------------------------------------------------------~~~Y~~v~~~~l~gi 93 (310)
T smart00128 79 -----------------------------------------------------------------DGQYNVLAKVRLVGI 93 (310)
T ss_pred -----------------------------------------------------------------CCceEEEeeeeecce
Confidence 125999999999999
Q ss_pred eEeeeeeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCC
Q 008034 324 FLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFP 403 (580)
Q Consensus 324 ~L~Vfvr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~ 403 (580)
+|+||+|.++.++|++++++++++|++|.+||||||+|+|.+.+++||||||||+||+.+ ..+||+||.+|++.+.|+
T Consensus 94 ~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R~~~~~~I~~~~~f~ 171 (310)
T smart00128 94 LVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQRNQDYKTILRALSFP 171 (310)
T ss_pred EEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhhHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999864 568999999999999997
Q ss_pred CCCCCCCCCCCccccccceEEEeccccceeecCh-HHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCCCcccccccCCCC
Q 008034 404 RVNSAGDEKSPETILQHDRVIWLGDLNYRIALNY-RSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTY 482 (580)
Q Consensus 404 ~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~-~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTY 482 (580)
.... ..+.+||+|||||||||||++++ ++++++++.++|..|+++|||+.+++++.+|.||.|++|+|||||
T Consensus 172 ~~~~-------~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTY 244 (310)
T smart00128 172 ERAE-------LSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTY 244 (310)
T ss_pred CCcc-------ccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCe
Confidence 5311 12678999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred CcC-CCCCCCCCCCCCCCCCccCCccccceeeec--CCceeee-eec-cccCcCCCcCceeEEEEEEEech
Q 008034 483 KYS-TNSDRYAGDDMHPKEKRRTPAWCDRILWYG--EGLHQLS-YVR-GESRFSDHRPVYGIFWAEVESSH 548 (580)
Q Consensus 483 Ky~-~~sd~Yd~~~~~~s~K~R~PSWCDRIL~~~--~~l~ql~-Y~~-~e~~~SDHrPV~A~F~v~v~~~~ 548 (580)
||+ .|++.|++ ++|+|+|||||||||+. .++.++. |.+ .++++||||||+|.|.+.|..++
T Consensus 245 K~~~~~t~~Yd~-----~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 245 KYDSVGTETYDT-----SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred eecCCCCccccC-----cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 999 99999984 78999999999999994 4566665 876 47999999999999999998763
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-68 Score=559.21 Aligned_cols=306 Identities=35% Similarity=0.597 Sum_probs=280.5
Q ss_pred CCCcceeeeEEEEEEEeecCCCCCCCCCCcccccCCC----CCCcEEEEeeEeeEecCCCCccccCC-CCchHHHHHHHH
Q 008034 82 HPRIIDVQNHSVFVATWNVAGRSPPSNLSLDDWLHAS----PPADIYVLGFQEIVPLNAGNVLGAED-NGPAKKWLALIR 156 (580)
Q Consensus 82 ~~~~i~~~~~ri~VGTWNVgGk~P~~dldLddWL~~~----~~~DIyvvGfQEiVpLNAgNVlgaED-~~p~~kWe~lIr 156 (580)
+.+|+--+++.|||+|.|++|+.| .-++..||++. ..+|+|||||||+|+|++|.||++ | ......|+..+-
T Consensus 21 ~sk~~~~~~~~~f~~~~n~~~~~~--k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~-~p~~rl~~wes~~~ 97 (460)
T COG5411 21 RSKYVIEKDVSIFVSTFNPPGKPP--KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSA-DPYDRLRIWESKVL 97 (460)
T ss_pred hhhheeecceeeEeccccCCCCCc--hhhhhhhcccccccccccceEEeccceeeeccchhhccC-CcccccchhHHHHH
Confidence 345778889999999999999977 56899999983 469999999999999999999999 6 444589999999
Q ss_pred HHhcCCCCCCCCCCCcCCCCCCCccccccccccccccccCccccccccccccccccCCCCCCCCCccccccccccccccc
Q 008034 157 KTLNSLPGTSGSSGCYTQSPIPEPIVEMDADFEGSARRMNSSFFHRRSFQTTHSWKMDNDPSIPQPRLDRRFSVCDRVIF 236 (580)
Q Consensus 157 ~~LN~~~~~~~~~~~~~~sp~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 236 (580)
..||. +.
T Consensus 98 ~~Ln~-~~------------------------------------------------------------------------ 104 (460)
T COG5411 98 DCLNG-AQ------------------------------------------------------------------------ 104 (460)
T ss_pred HHhcc-cc------------------------------------------------------------------------
Confidence 99995 11
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccCCCCCCeEEEE
Q 008034 237 GHRPSDYDPSFRWGHRPSDYSRPSDYSRPSDYSRWGSSDDDNGPGDSPSTVLYSPMSYSGSGSMEHGYRMPGNSRYCLVA 316 (580)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~ 316 (580)
..++|.++.
T Consensus 105 -----------------------------------------------------------------------~~eky~~l~ 113 (460)
T COG5411 105 -----------------------------------------------------------------------SDEKYSLLR 113 (460)
T ss_pred -----------------------------------------------------------------------cCCceEEec
Confidence 124699999
Q ss_pred eeeecceeEeeeeeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHH
Q 008034 317 SKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEI 396 (580)
Q Consensus 317 s~qmvGi~L~Vfvr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eI 396 (580)
+.||+|+++.||.+.+..+.+.+|..+..+||++|..+|||+|+++|.+..++||||+|||+||..+ .++|+.||..|
T Consensus 114 s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I 191 (460)
T COG5411 114 SPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSI 191 (460)
T ss_pred chhccCcceEEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 45699999999
Q ss_pred HHhCCCCCCCCCCCCCCCccccccceEEEeccccceeecChHHHHHHHHhcC--hHHHHhhhHHHHHHHcCCcCCCCccc
Q 008034 397 LRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRIALNYRSAKALVEMQN--WRVLLENDQLRKEQRQGRVFVGWNEG 474 (580)
Q Consensus 397 l~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~~v~~Li~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg 474 (580)
.+.++|++. ..|.+||+|||+|||||||++.+++++..+...+ +..|+++|||..|+..|.+|.||+|.
T Consensus 192 ~~~i~f~~g---------~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~ 262 (460)
T COG5411 192 ASNICFSRG---------LRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEP 262 (460)
T ss_pred HHheecCCC---------ceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecc
Confidence 999999853 3789999999999999999999999999988877 77899999999999999999999999
Q ss_pred ccccCCCCCcCCCCCCCCCCCCCCCCCccCCccccceeeecCCceeeeeeccc-cCcCCCcCceeEEEEEEEechhh
Q 008034 475 KIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGE-SRFSDHRPVYGIFWAEVESSHNR 550 (580)
Q Consensus 475 ~I~FpPTYKy~~~sd~Yd~~~~~~s~K~R~PSWCDRIL~~~~~l~ql~Y~~~e-~~~SDHrPV~A~F~v~v~~~~~~ 550 (580)
.|+|||||||+.|++.|++ ++|.|+||||||||+++..+++++|.+.+ +++||||||+|+|.+.+.+++..
T Consensus 263 ~i~FpPTYKfd~gt~~ydt-----sdk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~ 334 (460)
T COG5411 263 VITFPPTYKFDYGTDEYDT-----SDKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPS 334 (460)
T ss_pred cccCCCceEeecCCccccc-----cccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcc
Confidence 9999999999999999985 78999999999999999999999999876 99999999999999999998853
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.97 E-value=2e-31 Score=269.65 Aligned_cols=175 Identities=27% Similarity=0.406 Sum_probs=130.8
Q ss_pred ccCceEEEEEEEEcCEEEEEEeecCCCCCCCccH---------HHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceE
Q 008034 353 LGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQ---------LRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRV 423 (580)
Q Consensus 353 ~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~---------~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~v 423 (580)
++.||.+.+||.|+++.|||||+||.++..+.+. ..|..++..||.+.. ..+..++++
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~-------------~~~~~~~~l 131 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS-------------AFISPSDPL 131 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh-------------hccCCCCcE
Confidence 7889999999999999999999999999877543 358889999987531 123457999
Q ss_pred EEeccccceeecChH-H-HH------HHHH------hcChHHHHhhhHHHHHHHc-------------CCcCCCCccccc
Q 008034 424 IWLGDLNYRIALNYR-S-AK------ALVE------MQNWRVLLENDQLRKEQRQ-------------GRVFVGWNEGKI 476 (580)
Q Consensus 424 fw~GDLNYRI~l~~~-~-v~------~Li~------~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I 476 (580)
|||||||||++...- + ++ ..++ ...|.+|+++|||..|++. .+.|.++.|.+|
T Consensus 132 F~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI 211 (356)
T PTZ00312 132 FIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAI 211 (356)
T ss_pred EEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccc
Confidence 999999999985421 1 11 1111 2358899999999999884 567779999999
Q ss_pred ccCCCCCcCCC----------------CCCCCCC----------------------C---------------CCCCCCcc
Q 008034 477 YFPPTYKYSTN----------------SDRYAGD----------------------D---------------MHPKEKRR 503 (580)
Q Consensus 477 ~FpPTYKy~~~----------------sd~Yd~~----------------------~---------------~~~s~K~R 503 (580)
.||||||-... ...|... + ...+.+.|
T Consensus 212 ~FpPTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r 291 (356)
T PTZ00312 212 RFPPTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDR 291 (356)
T ss_pred cCCCcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhccc
Confidence 99999993321 1111100 0 02456899
Q ss_pred CCccccceeeecCCc----------------------------eeeeeeccccCcCCCcCceeEE
Q 008034 504 TPAWCDRILWYGEGL----------------------------HQLSYVRGESRFSDHRPVYGIF 540 (580)
Q Consensus 504 ~PSWCDRIL~~~~~l----------------------------~ql~Y~~~e~~~SDHrPV~A~F 540 (580)
+|||||||||...++ .+..|.+.++..+||.+|+..|
T Consensus 292 ~pawcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 292 LPAWCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred chhhhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 999999999985432 2345888899999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-28 Score=227.97 Aligned_cols=142 Identities=51% Similarity=0.817 Sum_probs=126.7
Q ss_pred CeEEEEeeeecceeEeeeeeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHH
Q 008034 311 RYCLVASKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRN 390 (580)
Q Consensus 311 ~Y~lV~s~qmvGi~L~Vfvr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN 390 (580)
.|+.+.++||+|+.+.+|++.++..++.+++++++++|+||++||||+|+++|.++++++|||||||+||.++.++ +||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~-~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYE-RRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHH-Hhh
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999987543 499
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCccccc-cceEEEeccccceeecC-hHHHHHHHHhcChHHHHhhh
Q 008034 391 ADVMEILRKTRFPRVNSAGDEKSPETILQ-HDRVIWLGDLNYRIALN-YRSAKALVEMQNWRVLLEND 456 (580)
Q Consensus 391 ~D~~eIl~~~~F~~~~~~~~~~~p~~I~d-hD~vfw~GDLNYRI~l~-~~~v~~Li~~~~~~~LL~~D 456 (580)
+|+.+|+..+.|+...... .|..+.. ||.|||+||||||+..+ +..++.++..+.|+.|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~---~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPAS---EPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCccc---ccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 9999999999998654322 2333333 89999999999999987 78889999999999888876
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.73 E-value=1.5e-18 Score=176.75 Aligned_cols=166 Identities=27% Similarity=0.445 Sum_probs=105.0
Q ss_pred ccCceEEEEEEEEcCEEEEEEeecCCCCCCCcc---------HHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceE
Q 008034 353 LGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGD---------QLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRV 423 (580)
Q Consensus 353 ~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d---------~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~v 423 (580)
++.||-.-.||.|++..|.|||.||-....+.. -..|.+.+.-+|..+.= .=+..|.+
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~-------------~~~~~~~~ 220 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE-------------EGLRNDAI 220 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh-------------hccCceEE
Confidence 567899999999999999999999966543311 11344444444444311 11245789
Q ss_pred EEeccccceeecC----hHHH-------H--------HHH---------------HhcChH-------------HHHhhh
Q 008034 424 IWLGDLNYRIALN----YRSA-------K--------ALV---------------EMQNWR-------------VLLEND 456 (580)
Q Consensus 424 fw~GDLNYRI~l~----~~~v-------~--------~Li---------------~~~~~~-------------~LL~~D 456 (580)
|.|||||||++.. +-.+ . ++| +++.|+ .++.+|
T Consensus 221 fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~d 300 (391)
T KOG1976|consen 221 FVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYD 300 (391)
T ss_pred EEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcc
Confidence 9999999999832 1111 0 111 111111 122222
Q ss_pred -HHHHHHHcCCcCCC-CcccccccCCCCCcCCCCCCCCCCCCCCCCCccCCccccceeeecCC----------ceeeeee
Q 008034 457 -QLRKEQRQGRVFVG-WNEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWYGEG----------LHQLSYV 524 (580)
Q Consensus 457 -QL~~e~~~g~vF~g-f~Eg~I~FpPTYKy~~~sd~Yd~~~~~~s~K~R~PSWCDRIL~~~~~----------l~ql~Y~ 524 (580)
+| ..|+. ..|..|.|||||.|..+...- .+..+.|+||||||||+..+. ...+.|.
T Consensus 301 kEl-------~nf~~kl~E~~i~FpPsypysed~~~~-----E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~ 368 (391)
T KOG1976|consen 301 KEL-------ANFAFKLKEETIFFPPSYPYSEDDSGK-----EEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYG 368 (391)
T ss_pred hHH-------HHHHHHHhheeecCCCCCCCCcCccch-----HHHHhccChHhhhhhhcCccHHHHhhccccCcccceec
Confidence 11 12333 789999999999998764321 124578999999999997542 1235566
Q ss_pred c--cccCcCCCcCceeEEEEE
Q 008034 525 R--GESRFSDHRPVYGIFWAE 543 (580)
Q Consensus 525 ~--~e~~~SDHrPV~A~F~v~ 543 (580)
. .|.++.|||||+..|.+-
T Consensus 369 ~vg~e~c~GdHKpVfl~~~i~ 389 (391)
T KOG1976|consen 369 LVGEEKCVGDHKPVFLHASIC 389 (391)
T ss_pred ccccccccCCCcceEEEEeec
Confidence 4 478999999999888763
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.12 E-value=4.4e-05 Score=79.29 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=87.9
Q ss_pred ccccCceEEEEEEEEcCEEEEEEeecCCCCCC----CccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEe
Q 008034 351 GYLGNKGSIAVSMLLHQTSFCFICSHLTSGQK----EGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWL 426 (580)
Q Consensus 351 G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~----~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~ 426 (580)
....+||.+.+++.+.+..+.|++.||.+... ..+...|..++.+|.+.+.-. .+...+.||++
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~------------~~~~~~pvIl~ 183 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSK------------NIPKDETVLIG 183 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhc------------cCCCCceEEEE
Confidence 34678999999999999999999999998531 112456889999987754210 12223569999
Q ss_pred ccccceeecChHHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCCCcccccccCCCCCcCCCCCCCCCCCCCCCCCccCCc
Q 008034 427 GDLNYRIALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPA 506 (580)
Q Consensus 427 GDLNYRI~l~~~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Yd~~~~~~s~K~R~PS 506 (580)
||||-.=+. .+ |..|+ .+|. ... .+|. .|.|-|+...+.|.... . .+=.|.
T Consensus 184 GDfN~~~~s--~~---------~~~ml--~~l~----~~~--p~~~------g~~~T~d~~~N~~a~~~---~-~~~~~~ 234 (283)
T TIGR03395 184 GDLNVNKGS--NE---------YHDMF--KTLN----VSE--PRYV------GVPATWDATTNSIAKYY---Y-PKEEPE 234 (283)
T ss_pred eeCCCCCCC--HH---------HHHHH--HHhc----ccC--CCcC------CCCCCcCCCcCchhhhh---c-CCCCcc
Confidence 999975321 11 22221 1111 110 1222 24556677666665321 1 122477
Q ss_pred cccceeeecCCc-----eeeeee---------c-cccCcCCCcCceeE
Q 008034 507 WCDRILWYGEGL-----HQLSYV---------R-GESRFSDHRPVYGI 539 (580)
Q Consensus 507 WCDRIL~~~~~l-----~ql~Y~---------~-~e~~~SDHrPV~A~ 539 (580)
+-|+||+++... ..+-+. . .-..+|||=||+|.
T Consensus 235 ~lDyvl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 235 YLDYIFVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred eEEEEEEECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 999999986422 111111 1 13468999999974
No 9
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.12 E-value=1.2e-06 Score=83.33 Aligned_cols=97 Identities=22% Similarity=0.213 Sum_probs=52.2
Q ss_pred cceeEeeeeeccccccccceEEeEEeeccc---ccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHH
Q 008034 321 VGIFLTVWVRSELRDHVKNMKVSCVGRGLM---GYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEIL 397 (580)
Q Consensus 321 vGi~L~Vfvr~~l~~~I~~v~~s~V~tGi~---G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl 397 (580)
.+..+.|++|.++...+........+.+.. ....+++.+.+++. ++.|+++++|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 456677788887655444443333233322 22455666777766 9999999999988532 1222222333
Q ss_pred HhCCCCCCCCCCCCCCCccccccceEEEeccccceeec
Q 008034 398 RKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRIAL 435 (580)
Q Consensus 398 ~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l 435 (580)
..+.-.. .......+|++||||.+..-
T Consensus 145 ~~~~~~~-----------~~~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 145 ARIQKIY-----------ADNPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp HHHHHHH-----------HTSSCCEEEEEEE-SS-BSS
T ss_pred hhhhhcc-----------cccccceEEEEeecccCCcc
Confidence 3220000 00000169999999998864
No 10
>PRK05421 hypothetical protein; Provisional
Probab=98.10 E-value=2.7e-05 Score=79.59 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=73.7
Q ss_pred ceEEEEEEEE-cCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccceee
Q 008034 356 KGSIAVSMLL-HQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRIA 434 (580)
Q Consensus 356 KGaV~ir~~l-~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~ 434 (580)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|...+. . ....+|++||||-.-.
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~--~--------------~~~p~Il~GDFN~~~~ 196 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA--H--------------HSGPVILAGDFNTWSR 196 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH--h--------------CCCCEEEEcccccCcc
Confidence 7899999988 566899999999865322 2347777777765431 0 0135899999993111
Q ss_pred cChHHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCCCcccccccCCCCCcCCCCCCCCCCCCCCCCCccCCccccceeee
Q 008034 435 LNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWY 514 (580)
Q Consensus 435 l~~~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Yd~~~~~~s~K~R~PSWCDRIL~~ 514 (580)
...... .++.... |+.. .+|++.-.+ ..+ ..|+ |+||..
T Consensus 197 ~~~~~l---------------~~~~~~~-------~l~~--~~~~~~~~~----~~~---------~~~I----D~I~~~ 235 (263)
T PRK05421 197 KRMNAL---------------KRFAREL-------GLKE--VRFTDDQRR----RAF---------GRPL----DFVFYR 235 (263)
T ss_pred cchHHH---------------HHHHHHc-------CCCc--cCcCCcccc----ccc---------CCCc----ceEEEC
Confidence 000001 1111110 1111 134433211 001 1233 999974
Q ss_pred cCCceeeeeeccccCcCCCcCceeEEEEE
Q 008034 515 GEGLHQLSYVRGESRFSDHRPVYGIFWAE 543 (580)
Q Consensus 515 ~~~l~ql~Y~~~e~~~SDHrPV~A~F~v~ 543 (580)
++...++...+...|||+||.|.|.+.
T Consensus 236 --~~~v~~~~v~~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 236 --GLNVSKASVLVTRASDHNPLLVEFSLK 262 (263)
T ss_pred --CcEEEEEEcCCCCCCCccCEEEEEEec
Confidence 566666665567899999999998763
No 11
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.99 E-value=0.0069 Score=60.27 Aligned_cols=35 Identities=31% Similarity=0.565 Sum_probs=23.0
Q ss_pred EEEEeecCCCCCCCCCCc-ccccCCCCCCcEEEEeeEeeE
Q 008034 94 FVATWNVAGRSPPSNLSL-DDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 94 ~VGTWNVgGk~P~~dldL-ddWL~~~~~~DIyvvGfQEiV 132 (580)
-|.||||+|...... .+ .+||.. ..|||+ ++||+-
T Consensus 2 ri~t~Nv~g~~~~~~-~~~~~~l~~-~~~DIv--~LQE~~ 37 (255)
T TIGR00633 2 KIISWNVNGLRARLH-KLFLDWLKE-EQPDVL--CLQETK 37 (255)
T ss_pred EEEEEecccHHHHhh-ccHHHHHHh-cCCCEE--EEEecc
Confidence 367999999653222 34 677754 357875 579973
No 12
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=96.84 E-value=0.0075 Score=62.28 Aligned_cols=60 Identities=23% Similarity=0.422 Sum_probs=44.4
Q ss_pred ceEEEEEEEEc-CEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccc----
Q 008034 356 KGSIAVSMLLH-QTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLN---- 430 (580)
Q Consensus 356 KGaV~ir~~l~-~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLN---- 430 (580)
.|++-+.+... +..|-+||+||.=.+ ..|-++...|+....++. -..++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~~---------------~~p~vl~GDFN~~p~ 178 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLPA---------------LNPTVLMGDFNNEPG 178 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCcc---------------cCceEEEccCCCCCC
Confidence 78999999884 778999999998443 358888888877332221 12689999999
Q ss_pred ---ceeec
Q 008034 431 ---YRIAL 435 (580)
Q Consensus 431 ---YRI~l 435 (580)
||+..
T Consensus 179 s~~yr~~~ 186 (259)
T COG3568 179 SAEYRLAA 186 (259)
T ss_pred Cccceecc
Confidence 77654
No 13
>PRK11756 exonuclease III; Provisional
Probab=96.66 E-value=0.014 Score=59.38 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=21.8
Q ss_pred CceEEEEEEEEcCEEEEEEeecCCCCC
Q 008034 355 NKGSIAVSMLLHQTSFCFICSHLTSGQ 381 (580)
Q Consensus 355 NKGaV~ir~~l~~ts~cFV~~HLaAg~ 381 (580)
..+.+.+.+...+..|.|+|+|++.+.
T Consensus 88 ~~r~l~~~i~~~~g~~~v~n~y~P~~~ 114 (268)
T PRK11756 88 QRRIIMATIPTPNGNLTVINGYFPQGE 114 (268)
T ss_pred cCCEEEEEEEcCCCCEEEEEEEecCCC
Confidence 357888888886556999999998775
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=95.73 E-value=0.057 Score=67.61 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=40.8
Q ss_pred ccCceEEEEEEEEc----C-EEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEec
Q 008034 353 LGNKGSIAVSMLLH----Q-TSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLG 427 (580)
Q Consensus 353 ~GNKGaV~ir~~l~----~-ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~G 427 (580)
..+||.+.+.+.+. + ..+-|+|.||.+...... |.+++.+|.+-+.- ...... ....+.....+|+.|
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~~---R~~Q~~ql~~~i~~-~i~~~~---~~~~~~~~~PvILaG 202 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLPS---TSSQVQETRRFVES-VIANVY---EQNNDGAEIPFVIAG 202 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcch---HHHHHHHHHHHHHH-hhhhhc---ccccCCCCCCEEEEe
Confidence 35899999998884 2 579999999998754322 33444444332110 000000 001122335799999
Q ss_pred cccc
Q 008034 428 DLNY 431 (580)
Q Consensus 428 DLNY 431 (580)
|||=
T Consensus 203 DFN~ 206 (1452)
T PTZ00297 203 DFNI 206 (1452)
T ss_pred eCCC
Confidence 9993
No 15
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.03 E-value=0.36 Score=49.47 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=25.6
Q ss_pred EEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEee
Q 008034 95 VATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEI 131 (580)
Q Consensus 95 VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEi 131 (580)
+.||||+|..-...-.+.+||.. ..||| |+|||+
T Consensus 3 i~swNVNgir~~~~~~~~~~l~~-~~~DI--iclQEt 36 (250)
T PRK13911 3 LISWNVNGLRACMTKGFMDFFNS-VDADV--FCIQES 36 (250)
T ss_pred EEEEEeCChhHhhhhhHHHHHHh-cCCCE--EEEEee
Confidence 67999999874443458899964 45886 568998
No 16
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=92.61 E-value=0.66 Score=46.73 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=22.5
Q ss_pred EEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEee
Q 008034 95 VATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEI 131 (580)
Q Consensus 95 VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEi 131 (580)
|.||||+|..... -.+-+||.. ..|||++ +||.
T Consensus 3 i~t~Ni~g~~~~~-~~~~~~l~~-~~~DIi~--LQE~ 35 (254)
T TIGR00195 3 IISWNVNGLRARL-HKGLAWLKE-NQPDVLC--LQET 35 (254)
T ss_pred EEEEEcCcHHHhH-HHHHHHHHh-cCCCEEE--EEec
Confidence 6799999964322 236777754 3578765 8995
No 17
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=89.35 E-value=0.13 Score=44.96 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=17.3
Q ss_pred CccccceeeecCCcee-eeeeccccCcCCCcCce
Q 008034 505 PAWCDRILWYGEGLHQ-LSYVRGESRFSDHRPVY 537 (580)
Q Consensus 505 PSWCDRIL~~~~~l~q-l~Y~~~e~~~SDHrPV~ 537 (580)
.+-=|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4557899987653333 11122356789999995
No 18
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=88.49 E-value=0.21 Score=51.13 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=31.3
Q ss_pred EEEEEEEEcCEEEEEEeecCCCCCCCcc-HHHH---HHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccc
Q 008034 358 SIAVSMLLHQTSFCFICSHLTSGQKEGD-QLRR---NADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNY 431 (580)
Q Consensus 358 aV~ir~~l~~ts~cFV~~HLaAg~~~~d-~~rR---N~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNY 431 (580)
+-.|...+. .|.++|+..+.+..... ...| ..++.+.+..+. ....+||+||||=
T Consensus 89 GR~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l~-----------------~~~~~Ii~GD~Nv 147 (250)
T PRK13911 89 GRVITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALE-----------------LKKPVIVCGDLNV 147 (250)
T ss_pred CCEEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhcc-----------------cCCCEEEEccccC
Confidence 333455554 48999999999864321 1122 223344444320 1246899999994
No 19
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=85.73 E-value=0.15 Score=52.87 Aligned_cols=33 Identities=39% Similarity=0.701 Sum_probs=23.8
Q ss_pred EEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEee
Q 008034 95 VATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEI 131 (580)
Q Consensus 95 VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEi 131 (580)
+.||||||.----.. +-+||.... ||| |++||+
T Consensus 3 I~SwNVNgiRar~~~-~~~~l~~~~-pDV--lclQEt 35 (261)
T COG0708 3 IASWNVNGLRARLKK-LLDWLEEEQ-PDV--LCLQET 35 (261)
T ss_pred eEEEehhhHHHHHHH-HHHHHHHhC-CCE--EEEEec
Confidence 579999997543333 889997533 585 678998
No 20
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=81.55 E-value=2.4 Score=47.57 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=48.8
Q ss_pred EeecccccccCceEEEEEEEEcCE---EEEEEeecCCCCCCCccHHHHHHHHHHHHHhCC-CCCCCCCCCCCCCcccccc
Q 008034 345 VGRGLMGYLGNKGSIAVSMLLHQT---SFCFICSHLTSGQKEGDQLRRNADVMEILRKTR-FPRVNSAGDEKSPETILQH 420 (580)
Q Consensus 345 V~tGi~G~~GNKGaV~ir~~l~~t---s~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~-F~~~~~~~~~~~p~~I~dh 420 (580)
.+.|++..--=++.|+.+|++-+. .++.+|.||--+...+++ |-....-||..+. |... .+ .|
T Consensus 226 ~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v--rL~Q~~iiL~~~~~~~~~-------~~----~~ 292 (495)
T KOG2338|consen 226 SGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV--RLAQVYIILAELEKMSKS-------SK----SH 292 (495)
T ss_pred ccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch--hhHHHHHHHHHHHHHHhh-------cc----cC
Confidence 455555432225667777766655 899999999999877777 6677777776541 1100 00 34
Q ss_pred ceEEEeccccc
Q 008034 421 DRVIWLGDLNY 431 (580)
Q Consensus 421 D~vfw~GDLNY 431 (580)
=.||++||||=
T Consensus 293 ~pi~l~GDfNt 303 (495)
T KOG2338|consen 293 WPIFLCGDFNT 303 (495)
T ss_pred CCeEEecCCCC
Confidence 57999999984
No 21
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=80.84 E-value=6.1 Score=41.60 Aligned_cols=62 Identities=26% Similarity=0.339 Sum_probs=39.4
Q ss_pred EEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccceee
Q 008034 360 AVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRIA 434 (580)
Q Consensus 360 ~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~ 434 (580)
.+-..+.+..+||.++||.+-... ..+|.+.+...+.+.+=- -.++-.-.||+-||+|.|=.
T Consensus 196 I~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~Ea-----------Ie~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 196 IVEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQEA-----------IESLPNATVIFGGDTNLRDR 257 (349)
T ss_pred EEEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHHH-----------HHhCCCceEEEcCcccchhh
Confidence 344556788899999999987532 245777776665543100 00111246899999999753
No 22
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=77.82 E-value=7.3 Score=42.49 Aligned_cols=201 Identities=21% Similarity=0.239 Sum_probs=105.0
Q ss_pred EEeeeecceeEeeeeeccccccccce-----EEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCC-Ccc--H
Q 008034 315 VASKQMVGIFLTVWVRSELRDHVKNM-----KVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQK-EGD--Q 386 (580)
Q Consensus 315 V~s~qmvGi~L~Vfvr~~l~~~I~~v-----~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~-~~d--~ 386 (580)
..|.-| |-.|+||.|-.+..-..+. .-..+-.| -..|-||---.++.+.+..+.+-|+||-|--. .+| .
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 345566 8889999888765432221 01111111 33677998888899999999999999988532 222 3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccccee-ecChHHHH--HHHHhcChHHHHhhhHHHHHHH
Q 008034 387 LRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRI-ALNYRSAK--ALVEMQNWRVLLENDQLRKEQR 463 (580)
Q Consensus 387 ~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI-~l~~~~v~--~Li~~~~~~~LL~~DQL~~e~~ 463 (580)
..|-.+.-++.+-++- +-...|.||..||||-+= +++..-.. .|+ ..|..|. -||+-.---
T Consensus 150 ~HR~~QAwdlaqfi~~-------------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~ 213 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRA-------------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSF 213 (422)
T ss_pred hHHHHHHHHHHHHHHH-------------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCccc
Confidence 4566655555442211 122358999999999754 23332211 122 1343332 233321111
Q ss_pred cCCcCCCCcccccccCCCCCcCCCCCCCCCCCCCCCCCccCCc----cccceeeecCCc--eeeeee----c---cccCc
Q 008034 464 QGRVFVGWNEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPA----WCDRILWYGEGL--HQLSYV----R---GESRF 530 (580)
Q Consensus 464 ~g~vF~gf~Eg~I~FpPTYKy~~~sd~Yd~~~~~~s~K~R~PS----WCDRIL~~~~~l--~ql~Y~----~---~e~~~ 530 (580)
...-|++.-||. |---. -+.|. +..+|.|- =-|-||+++... +.-.|. + .+..+
T Consensus 214 r~s~~~~l~~g~-----tcd~~--~N~y~------~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~ 280 (422)
T KOG3873|consen 214 RLSEDKELVEGN-----TCDSP--LNCYT------SAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSY 280 (422)
T ss_pred ccchhhhhhcCC-----cccCc--chhhh------HHHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCc
Confidence 111133444543 11111 12232 11122221 147888887532 222232 1 14678
Q ss_pred CCCcCceeEEEEEEEec
Q 008034 531 SDHRPVYGIFWAEVESS 547 (580)
Q Consensus 531 SDHrPV~A~F~v~v~~~ 547 (580)
|||--+.|++.+.-...
T Consensus 281 SDH~Al~a~L~I~~~~~ 297 (422)
T KOG3873|consen 281 SDHEALMATLKIFKQPP 297 (422)
T ss_pred cchhhheeEEEeecCCC
Confidence 99999999988766544
No 23
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=74.61 E-value=0.69 Score=43.80 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=20.4
Q ss_pred EEeecCCCCCCCCC-----CcccccCCCCCCcEEEEeeEeeEe
Q 008034 96 ATWNVAGRSPPSNL-----SLDDWLHASPPADIYVLGFQEIVP 133 (580)
Q Consensus 96 GTWNVgGk~P~~dl-----dLddWL~~~~~~DIyvvGfQEiVp 133 (580)
+||||.|..+..+- .|.+||.... ||| |+|||+-.
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~-~Di--i~LQEv~~ 40 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELD-PDI--IALQEVRN 40 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT--SE--EEEEEEES
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcC-CCE--EEEecchh
Confidence 69999992111100 1677775333 885 55999964
No 24
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=73.25 E-value=16 Score=38.32 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=18.6
Q ss_pred eEEEEEEEEcCE---EEEEEeecCCCC
Q 008034 357 GSIAVSMLLHQT---SFCFICSHLTSG 380 (580)
Q Consensus 357 GaV~ir~~l~~t---s~cFV~~HLaAg 380 (580)
=...++|+...+ .|.+|++|+...
T Consensus 128 eP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 128 EPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred cceEEEEEeCCCCCccEEEEEecCChH
Confidence 345677777665 799999999885
No 25
>PRK11756 exonuclease III; Provisional
Probab=69.43 E-value=1.3 Score=44.93 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=21.8
Q ss_pred EEEeecCCCCCCCCC-CcccccCCCCCCcEEEEeeEee
Q 008034 95 VATWNVAGRSPPSNL-SLDDWLHASPPADIYVLGFQEI 131 (580)
Q Consensus 95 VGTWNVgGk~P~~dl-dLddWL~~~~~~DIyvvGfQEi 131 (580)
|.||||+|..- .+ .|.+||.. ..|||++ |||+
T Consensus 3 i~T~Nv~g~~~--~~~~i~~~i~~-~~pDIi~--LQE~ 35 (268)
T PRK11756 3 FVSFNINGLRA--RPHQLEAIIEK-HQPDVIG--LQET 35 (268)
T ss_pred EEEEEcCCHHH--HHHHHHHHHHh-cCCCEEE--EEec
Confidence 56999999632 11 26777753 4589755 9998
No 26
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=69.03 E-value=8.2 Score=44.83 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=39.3
Q ss_pred EEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCC-CCCCCCCCCCCCCccccccceEEEeccccceeecChHHHHHHHHh
Q 008034 368 TSFCFICSHLTSGQKEGDQLRRNADVMEILRKTR-FPRVNSAGDEKSPETILQHDRVIWLGDLNYRIALNYRSAKALVEM 446 (580)
Q Consensus 368 ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~-F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~~v~~Li~~ 446 (580)
..||++|+||-.+....+. |..+...|++.+. +.. . ..-.||++||||- .+.+.+-+++..
T Consensus 417 ~~l~VaNTHL~~~p~~~dv--Rl~Q~~~Ll~~l~~~~~--------~-----~~~PvIlcGDFNS---~P~S~vy~lLt~ 478 (606)
T PLN03144 417 QLLCVANTHIHANQELKDV--KLWQVHTLLKGLEKIAA--------S-----ADIPMLVCGDFNS---VPGSAPHCLLAT 478 (606)
T ss_pred cEEEEEEeeeccCCccchh--HHHHHHHHHHHHHHHhh--------c-----CCCceEEeccCCC---CCCChhhhhhhc
Confidence 3699999999776543333 6666666665442 110 0 0124899999995 445566677766
Q ss_pred cC
Q 008034 447 QN 448 (580)
Q Consensus 447 ~~ 448 (580)
+.
T Consensus 479 G~ 480 (606)
T PLN03144 479 GK 480 (606)
T ss_pred CC
Confidence 53
No 27
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.25 E-value=4.6 Score=43.06 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=38.5
Q ss_pred cCceEEEEEEEE-cCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCcccccc-ceEEEeccccc
Q 008034 354 GNKGSIAVSMLL-HQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQH-DRVIWLGDLNY 431 (580)
Q Consensus 354 GNKGaV~ir~~l-~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dh-D~vfw~GDLNY 431 (580)
+-||++.+.... +++.+..+|.|..--.-..+. .| ++..++.+.+. .| --||+.||||=
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~-~~-~ql~~l~~~i~-----------------~~~gpvIlaGDfNa 233 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTDP-QR-AQLLELGDQIA-----------------GHSGPVILAGDFNA 233 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCccH-HH-HHHHHHHHHHH-----------------cCCCCeEEeecCCC
Confidence 458888877765 578999999998843322233 34 55666655331 11 23899999995
No 28
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.51 E-value=4.2 Score=40.38 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=29.4
Q ss_pred EEEEEEeecCCCCCCCccH--HHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccccee
Q 008034 368 TSFCFICSHLTSGQKEGDQ--LRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRI 433 (580)
Q Consensus 368 ts~cFV~~HLaAg~~~~d~--~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI 433 (580)
..|.++++|++++...+.+ ..|...+..+...+. . .+.....+|++||||-..
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~-----------~~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--K-----------ELDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--H-----------HHhcCCcEEEEeecccCC
Confidence 3688999999887632221 234444444433210 0 001225689999999654
No 29
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=57.71 E-value=8.3 Score=40.49 Aligned_cols=37 Identities=41% Similarity=0.629 Sum_probs=26.2
Q ss_pred EEEEeecCCCCCCC----CCCcccccCCCCCCcEEEEeeEeeE
Q 008034 94 FVATWNVAGRSPPS----NLSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 94 ~VGTWNVgGk~P~~----dldLddWL~~~~~~DIyvvGfQEiV 132 (580)
-|||||.-|-.-.. ..++...|...+++||.+ |||.=
T Consensus 26 ~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla--~QEag 66 (271)
T PRK15251 26 KVATWNLQGSSASTESKWNVNVRQLLSGENPADILM--VQEAG 66 (271)
T ss_pred eEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEE--EEecC
Confidence 37899999985433 235666666667899865 79973
No 30
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=56.77 E-value=4 Score=41.05 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=10.6
Q ss_pred EEEEEeecCCCCC
Q 008034 369 SFCFICSHLTSGQ 381 (580)
Q Consensus 369 s~cFV~~HLaAg~ 381 (580)
.|.++|.|+.++.
T Consensus 98 ~~~l~~~~~p~~~ 110 (254)
T TIGR00195 98 SFLVINGYFPNGS 110 (254)
T ss_pred CEEEEEEEccCCC
Confidence 4889999999863
No 31
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=41.62 E-value=58 Score=34.31 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=35.3
Q ss_pred cCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccc
Q 008034 354 GNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLN 430 (580)
Q Consensus 354 GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLN 430 (580)
.....+++++ .+ +.|.+.||.+... .+ |.+-+..|..-.+ +. .+ +.-++++||||
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~-~d---a~aiV~~I~~~f~-~~--------~~-----~~pw~I~GDFN 194 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGG-TD---AGAIVRAVHNFFR-PN--------MR-----HINWMIAGDFN 194 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCC-cc---HHHHHHHHHHHHh-hc--------cC-----CCCEEEeccCC
Confidence 4567777776 33 7999999999832 12 6666666655321 00 01 24589999999
No 32
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=40.57 E-value=6.9 Score=44.82 Aligned_cols=85 Identities=13% Similarity=-0.040 Sum_probs=63.4
Q ss_pred cccccCcCCCCc-------cccCccccccccCC-CccccccccCCCCCCcce--------------------eeeEEEEE
Q 008034 44 VEYRTSFSEREP-------CTIKKSKTEKFSKS-GEPVRRGRMNLDHPRIID--------------------VQNHSVFV 95 (580)
Q Consensus 44 ~~~~~s~~~~~~-------~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~i~--------------------~~~~ri~V 95 (580)
++.++++++++. .+..++..+-++++ .++.||..++++..++.. -..+.+++
T Consensus 455 ~alks~fTr~g~~s~~gal~D~~~S~~R~y~nnf~D~~rQ~~idllLg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (570)
T COG5329 455 GALKSSFTRRGRRSFAGALNDFIKSFSRYYINNFTDGQRQDAIDLLLGKFRPQEAFSYRPLRITFLLLMITACTISWFST 534 (570)
T ss_pred ccccchhhhhcchhhhhhhhhhhhhhHHhhcccccchhhhhHHHHHhccCCCcccccccchhhhhhhhhhhhhheeEeeE
Confidence 577888887663 35556777778888 999999999998887642 23467888
Q ss_pred EEeecCCCCCCCCCCcccccCCC--CCCcEEEEeeEee
Q 008034 96 ATWNVAGRSPPSNLSLDDWLHAS--PPADIYVLGFQEI 131 (580)
Q Consensus 96 GTWNVgGk~P~~dldLddWL~~~--~~~DIyvvGfQEi 131 (580)
++.|..|..++. +|..|| +. .-.+.|+.|++.+
T Consensus 535 ~~~~~~~~~~~~--~l~~~~-~~~~~~~~~~~~~~~~~ 569 (570)
T COG5329 535 IIFISSLLCSNP--SLLLVL-AVILIVLSKLYQFPHGR 569 (570)
T ss_pred EEEeeccccCch--hhhhhh-hhhhhhhhhhccccccC
Confidence 888888887554 678888 43 4578888888765
No 33
>PRK05421 hypothetical protein; Provisional
Probab=34.98 E-value=23 Score=36.24 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEEEeecCCCCCCCC-CCcccccCCCCCCcEEEEeeEeeE
Q 008034 93 VFVATWNVAGRSPPSN-LSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 93 i~VGTWNVgGk~P~~d-ldLddWL~~~~~~DIyvvGfQEiV 132 (580)
+-|.||||.+..-... .+++ ++ ...||| |+|||+-
T Consensus 44 lri~t~NI~~~~~~~~~~~l~-~l--~~~~Di--I~LQEv~ 79 (263)
T PRK05421 44 LRLLVWNIYKQQRAGWLSVLK-NL--GKDADL--VLLQEAQ 79 (263)
T ss_pred eeEEEEEccccccccHHHHHH-Hh--ccCCCE--EEEEecc
Confidence 3455999997764322 2223 33 445675 6699994
No 34
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.79 E-value=17 Score=40.23 Aligned_cols=17 Identities=47% Similarity=0.768 Sum_probs=14.4
Q ss_pred ccccceEEEecccccee
Q 008034 417 ILQHDRVIWLGDLNYRI 433 (580)
Q Consensus 417 I~dhD~vfw~GDLNYRI 433 (580)
+..++.||+=||||||=
T Consensus 349 L~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYRK 365 (434)
T ss_pred HhhCcEEEEeccccHHH
Confidence 44678999999999984
No 35
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.22 E-value=1e+02 Score=33.23 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=23.3
Q ss_pred ccceeeecCCceeeeeeccccCcCCCcCceeEEEE
Q 008034 508 CDRILWYGEGLHQLSYVRGESRFSDHRPVYGIFWA 542 (580)
Q Consensus 508 CDRIL~~~~~l~ql~Y~~~e~~~SDHrPV~A~F~v 542 (580)
-|-|+++| +....-.+.+.+-|||+||.+.|+.
T Consensus 275 IDhvf~rg--l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 275 IDHVFYRG--LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred cceeeecC--cchhhhhhccccCCCCCceEEEEEe
Confidence 57788777 3333333445689999999999974
No 36
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.56 E-value=22 Score=23.46 Aligned_cols=9 Identities=22% Similarity=0.700 Sum_probs=7.6
Q ss_pred EEEEEEEee
Q 008034 91 HSVFVATWN 99 (580)
Q Consensus 91 ~ri~VGTWN 99 (580)
=+|||||+|
T Consensus 16 G~lWigT~~ 24 (24)
T PF07494_consen 16 GNLWIGTYN 24 (24)
T ss_dssp SCEEEEETS
T ss_pred cCEEEEeCC
Confidence 379999987
No 37
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=26.16 E-value=38 Score=32.06 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=16.4
Q ss_pred cCCCCCc-CCCC--CCCCCCCCCCCCCccCCccc
Q 008034 478 FPPTYKY-STNS--DRYAGDDMHPKEKRRTPAWC 508 (580)
Q Consensus 478 FpPTYKy-~~~s--d~Yd~~~~~~s~K~R~PSWC 508 (580)
=||-||| +++. ..|.| .-|+|.|-
T Consensus 93 ~paKYky~dp~G~~~TWTG-------rGR~P~wi 119 (135)
T PRK10947 93 RPAKYSYVDENGETKTWTG-------QGRTPAVI 119 (135)
T ss_pred CCCCCcccCCCCCcCcccC-------CCCCCHHH
Confidence 3789999 5433 35544 56999995
No 38
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=23.99 E-value=66 Score=28.42 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=28.4
Q ss_pred eeEeeEecCCCCccccCCCCchHHHHHHHHHHhcC
Q 008034 127 GFQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLNS 161 (580)
Q Consensus 127 GfQEiVpLNAgNVlgaED~~p~~kWe~lIr~~LN~ 161 (580)
+|+ |+--+.-=+|.|++..-...|.+.|+++|++
T Consensus 69 ~F~-i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVT-LVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEE-EEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 788 5544666678999989999999999999985
Done!