Query 008034
Match_columns 580
No_of_seqs 337 out of 1090
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:32:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 3.7E-94 1.3E-98 744.5 34.9 303 85-548 2-307 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 4.4E-89 1.5E-93 707.7 30.9 229 311-545 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 4.2E-86 1.4E-90 694.0 33.1 310 83-555 17-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 1.5E-82 5E-87 669.5 32.0 244 311-561 86-339 (357)
5 2imq_X Salivary nitrophorin; f 100.0 4.7E-66 1.6E-70 525.5 24.2 270 89-544 5-282 (282)
6 4fva_A 5'-tyrosyl-DNA phosphod 99.2 8.5E-11 2.9E-15 112.0 10.1 68 353-433 103-170 (256)
7 3teb_A Endonuclease/exonucleas 99.1 7.8E-10 2.7E-14 106.9 13.9 62 353-433 120-181 (266)
8 4gz1_A Tyrosyl-DNA phosphodies 98.7 1.5E-07 5.3E-12 89.2 13.0 67 350-432 96-162 (256)
9 4f1h_A Tyrosyl-DNA phosphodies 98.5 3.4E-07 1.2E-11 85.2 8.6 63 354-432 94-156 (250)
10 1zwx_A SMCL, sphingomyelinase- 98.4 2.3E-06 8E-11 84.6 12.1 70 353-434 128-201 (301)
11 3i41_A Beta-hemolysin; beta to 98.2 2.1E-06 7.2E-11 87.3 8.2 70 352-433 146-219 (317)
12 4gew_A 5'-tyrosyl-DNA phosphod 98.2 8.8E-06 3E-10 85.0 12.0 66 354-432 210-275 (362)
13 3l1w_A Uncharacterized protein 98.1 3.4E-05 1.2E-09 74.5 14.6 61 353-431 107-169 (257)
14 1ako_A Exonuclease III; AP-end 98.1 1.3E-05 4.5E-10 77.2 11.6 67 354-433 87-156 (268)
15 2ddr_A Sphingomyelin phosphodi 98.1 1.5E-05 5.2E-10 78.7 12.1 69 353-433 128-200 (306)
16 3g6s_A Putative endonuclease/e 98.1 2.5E-05 8.5E-10 76.0 11.9 61 353-431 113-175 (267)
17 3mpr_A Putative endonuclease/e 97.7 0.00024 8.2E-09 70.9 12.3 62 354-432 118-182 (298)
18 2jc4_A Exodeoxyribonuclease II 97.2 0.0014 4.7E-08 62.5 10.1 53 369-434 98-152 (256)
19 1wdu_A TRAS1 ORF2P; four-layer 96.7 0.012 4.1E-07 56.5 12.0 58 354-432 101-158 (245)
20 1vyb_A ORF2 contains A reverse 96.5 0.0065 2.2E-07 57.0 8.3 53 358-432 97-149 (238)
21 2o3h_A DNA-(apurinic or apyrim 96.3 0.006 2E-07 59.6 7.3 34 508-541 249-284 (285)
22 4b8c_D Glucose-repressible alc 96.3 0.00097 3.3E-08 75.6 1.7 62 366-432 545-607 (727)
23 1hd7_A DNA-(apurinic or apyrim 95.8 0.011 3.9E-07 59.4 6.6 37 93-132 62-98 (318)
24 2j63_A AP-endonuclease; base e 95.8 0.016 5.5E-07 62.8 8.1 35 508-542 430-466 (467)
25 2jc5_A Exodeoxyribonuclease; h 95.6 0.012 4.3E-07 55.9 5.7 37 506-542 218-256 (259)
26 3g91_A MTH0212, exodeoxyribonu 94.6 0.11 3.9E-06 50.1 9.2 36 93-131 4-39 (265)
27 2voa_A AF_EXO, XTHA, exodeoxyr 94.3 0.089 3.1E-06 50.0 7.5 36 93-132 2-37 (257)
28 2ei9_A Non-LTR retrotransposon 92.9 0.38 1.3E-05 46.8 9.5 35 93-131 8-42 (240)
29 2a40_B Deoxyribonuclease-1; WA 90.8 0.25 8.4E-06 47.9 5.3 26 356-381 111-139 (260)
30 4f1h_A Tyrosyl-DNA phosphodies 84.9 0.16 5.4E-06 46.5 -0.3 36 93-131 4-43 (250)
31 3ngq_A CCR4-NOT transcription 82.4 1.4 4.6E-05 46.8 5.6 75 367-447 194-269 (398)
32 4gz1_A Tyrosyl-DNA phosphodies 82.1 0.29 1E-05 45.6 0.2 35 508-542 211-254 (256)
33 4gew_A 5'-tyrosyl-DNA phosphod 82.0 0.27 9.1E-06 51.0 -0.1 39 503-542 315-362 (362)
34 1sr4_B CDT B, cytolethal diste 74.9 4.6 0.00016 40.7 6.4 60 354-430 120-179 (261)
35 1ako_A Exonuclease III; AP-end 72.9 0.37 1.3E-05 45.7 -2.0 35 94-132 2-36 (268)
36 2jc5_A Exodeoxyribonuclease; h 70.7 0.45 1.6E-05 44.9 -2.0 37 93-132 2-38 (259)
37 2ei9_A Non-LTR retrotransposon 68.6 0.56 1.9E-05 45.6 -1.9 56 355-433 77-132 (240)
38 2o3h_A DNA-(apurinic or apyrim 65.2 0.56 1.9E-05 45.4 -2.7 37 93-132 29-65 (285)
39 1vyb_A ORF2 contains A reverse 63.8 0.77 2.6E-05 42.6 -1.9 33 508-540 204-237 (238)
40 1sr4_B CDT B, cytolethal diste 62.0 2.4 8.1E-05 42.7 1.2 37 95-133 7-47 (261)
41 2voa_A AF_EXO, XTHA, exodeoxyr 59.9 1.1 3.8E-05 42.3 -1.6 34 508-541 217-256 (257)
42 1hd7_A DNA-(apurinic or apyrim 57.2 0.96 3.3E-05 45.2 -2.7 52 368-433 163-215 (318)
43 2ddr_A Sphingomyelin phosphodi 56.1 9.6 0.00033 36.8 4.4 15 528-542 291-305 (306)
44 2j63_A AP-endonuclease; base e 55.6 1 3.4E-05 48.8 -3.1 37 93-132 150-189 (467)
45 3g6s_A Putative endonuclease/e 54.0 6.9 0.00024 37.2 2.9 36 507-543 222-261 (267)
46 3mpr_A Putative endonuclease/e 53.9 1.8 6.2E-05 42.6 -1.3 17 529-545 276-292 (298)
47 3g91_A MTH0212, exodeoxyribonu 53.7 1 3.5E-05 43.2 -3.0 35 508-542 221-257 (265)
48 2f1n_A CDT B, cytolethal diste 50.2 4.4 0.00015 40.8 0.9 60 355-432 130-189 (262)
49 2f1n_A CDT B, cytolethal diste 44.6 19 0.00064 36.3 4.4 38 93-132 16-57 (262)
50 3pt1_A UPF0364 protein YMR027W 34.6 8.1 0.00028 42.0 -0.1 17 417-433 374-390 (471)
51 2a40_B Deoxyribonuclease-1; WA 22.4 24 0.00081 33.7 0.8 13 528-540 247-259 (260)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=3.7e-94 Score=744.51 Aligned_cols=303 Identities=38% Similarity=0.697 Sum_probs=280.8
Q ss_pred cceeeeEEEEEEEeecCCCCCCCCCCcccccCCC-CCCcEEEEeeEeeEecCCCCccccCCCCchHHHHHHHHHHhcCCC
Q 008034 85 IIDVQNHSVFVATWNVAGRSPPSNLSLDDWLHAS-PPADIYVLGFQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLNSLP 163 (580)
Q Consensus 85 ~i~~~~~ri~VGTWNVgGk~P~~dldLddWL~~~-~~~DIyvvGfQEiVpLNAgNVlgaED~~p~~kWe~lIr~~LN~~~ 163 (580)
||..+++|||||||||||+.|++ ||.+||.+. .+||||||||||| +|++++++.. |......|+.+|.++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~--~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~~-~~~~~~~W~~~i~~~L~~-- 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKE--CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFFH-DTPKEEEWFKAVSEGLHP-- 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCS--CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTTC-CCHHHHHHHHHHHHHSCT--
T ss_pred CceeeccEEEEEEEEcCCccCch--hHHHHhcccCCCCCeEEEEEEec-ccchhhhccc-CcchHHHHHHHHHHhcCC--
Confidence 89999999999999999999865 689999864 6899999999999 8999998875 677789999999999972
Q ss_pred CCCCCCCCcCCCCCCCccccccccccccccccCccccccccccccccccCCCCCCCCCcccccccccccccccCCCCCCC
Q 008034 164 GTSGSSGCYTQSPIPEPIVEMDADFEGSARRMNSSFFHRRSFQTTHSWKMDNDPSIPQPRLDRRFSVCDRVIFGHRPSDY 243 (580)
Q Consensus 164 ~~~~~~~~~~~sp~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 243 (580)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccCCCCCCeEEEEeeeecce
Q 008034 244 DPSFRWGHRPSDYSRPSDYSRPSDYSRWGSSDDDNGPGDSPSTVLYSPMSYSGSGSMEHGYRMPGNSRYCLVASKQMVGI 323 (580)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~s~qmvGi 323 (580)
..+|++|+++|||||
T Consensus 76 -----------------------------------------------------------------~~~Y~~v~s~~lvGl 90 (313)
T 3mtc_A 76 -----------------------------------------------------------------DAKYAKVKLIRLVGI 90 (313)
T ss_dssp -----------------------------------------------------------------TSCEEEEEEEEETTE
T ss_pred -----------------------------------------------------------------CCCEEEEEEechhhh
Confidence 025999999999999
Q ss_pred eEeeeeeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCC
Q 008034 324 FLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFP 403 (580)
Q Consensus 324 ~L~Vfvr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~ 403 (580)
+|+||||+++.++|++|++++||||+||++||||||+|||.+++|+|||||||||||+++ .++||+||.+|++++.|+
T Consensus 91 ~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~ 168 (313)
T 3mtc_A 91 MLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFC 168 (313)
T ss_dssp EEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBC
T ss_pred hhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999999864 578999999999999997
Q ss_pred CCCCCCCCCCCccccccceEEEeccccceee-cChHHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCCCcccccccCCCC
Q 008034 404 RVNSAGDEKSPETILQHDRVIWLGDLNYRIA-LNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTY 482 (580)
Q Consensus 404 ~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~-l~~~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTY 482 (580)
.... ...+.+|.+||+|||||||||||+ ++.++++++|+.++|+.||++|||+.|+++|++|.||.||+|+|||||
T Consensus 169 ~~~~---~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTY 245 (313)
T 3mtc_A 169 QPDP---SLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTY 245 (313)
T ss_dssp CSCS---SSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCB
T ss_pred CCCC---ccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCc
Confidence 6432 124568999999999999999996 899999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCCccCCccccceeeecCCceeeeeecc-ccCcCCCcCceeEEEEEEEech
Q 008034 483 KYSTNSDRYAGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRG-ESRFSDHRPVYGIFWAEVESSH 548 (580)
Q Consensus 483 Ky~~~sd~Yd~~~~~~s~K~R~PSWCDRIL~~~~~l~ql~Y~~~-e~~~SDHrPV~A~F~v~v~~~~ 548 (580)
||+.||+.||+ ++|+|+|||||||||++++++|+.|.+. ++++||||||+|+|.+++.++.
T Consensus 246 Kyd~~s~~ydt-----s~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~ 307 (313)
T 3mtc_A 246 KYDTGSDDWDT-----SEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVA 307 (313)
T ss_dssp CBCTTSSSBCC-----STTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEEC
T ss_pred cCcCCCccccc-----ccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEee
Confidence 99999999984 8899999999999999999999999985 7999999999999999999863
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=4.4e-89 Score=707.70 Aligned_cols=229 Identities=33% Similarity=0.596 Sum_probs=196.3
Q ss_pred CeEEEEeeeecceeEeeeeeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHH
Q 008034 311 RYCLVASKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRN 390 (580)
Q Consensus 311 ~Y~lV~s~qmvGi~L~Vfvr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN 390 (580)
+|++|+++|||||+|+||||.++.++|++|++++||||++|++||||||+|||.+++|+|||||||||||++ +..+||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~--~~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNE--KTARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTT--CHHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCch--HHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999986 467899
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccceeecChHHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCC
Q 008034 391 ADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRIALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVG 470 (580)
Q Consensus 391 ~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~g 470 (580)
+||.+|++++.|+.... ...+.+.+||||||||||||||++++++++++|+.++|+.||++|||++|+++|++|.|
T Consensus 158 ~d~~~I~~~l~f~~~~~----~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~g 233 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQL----NAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLR 233 (316)
T ss_dssp HHHHHHHHHCCC-----------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTT
T ss_pred HHHHHHHHhCCCCCCCc----CccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCcccc
Confidence 99999999999974211 12234567999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCcCCCCC-CCCCCCC-CCCCCccCCccccceeeecC---Cceeeeeecc-ccCcCCCcCceeEEEEEE
Q 008034 471 WNEGKIYFPPTYKYSTNSD-RYAGDDM-HPKEKRRTPAWCDRILWYGE---GLHQLSYVRG-ESRFSDHRPVYGIFWAEV 544 (580)
Q Consensus 471 f~Eg~I~FpPTYKy~~~sd-~Yd~~~~-~~s~K~R~PSWCDRIL~~~~---~l~ql~Y~~~-e~~~SDHrPV~A~F~v~v 544 (580)
|+||+|+|||||||+.|++ .|+.+.. .+++|+|+|||||||||++. .+.+++|.+. ++++||||||+|+|.++|
T Consensus 234 f~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V 313 (316)
T 4a9c_A 234 FSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313 (316)
T ss_dssp CBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEEC
T ss_pred cccCCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEE
Confidence 9999999999999999995 5764322 24678899999999999985 4789999974 899999999999999998
Q ss_pred E
Q 008034 545 E 545 (580)
Q Consensus 545 ~ 545 (580)
.
T Consensus 314 ~ 314 (316)
T 4a9c_A 314 T 314 (316)
T ss_dssp C
T ss_pred E
Confidence 4
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=4.2e-86 Score=694.04 Aligned_cols=310 Identities=36% Similarity=0.632 Sum_probs=277.8
Q ss_pred CCcceeeeEEEEEEEeecCCCCCCCCCCcccccCCC--CCCcEEEEeeEeeEecCCCCccccCCCCchHHHHHHHHHHhc
Q 008034 83 PRIIDVQNHSVFVATWNVAGRSPPSNLSLDDWLHAS--PPADIYVLGFQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLN 160 (580)
Q Consensus 83 ~~~i~~~~~ri~VGTWNVgGk~P~~dldLddWL~~~--~~~DIyvvGfQEiVpLNAgNVlgaED~~p~~kWe~lIr~~LN 160 (580)
.+|+..++++||||||||||+.| +.||.+||.+. .+||||||||||||||+|++|+++ |+.+...|+++|+++||
T Consensus 17 ~e~~~~~~~~i~v~TwNv~g~~~--~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~~~w~~~i~~~L~ 93 (347)
T 1i9z_A 17 NEFSEHKNVKIFVASYNLNGCSA--TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKRREWESCVKRLLN 93 (347)
T ss_dssp GGTEEEEEEEEEEEEEECTTCCC--CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCcEEEEEeEecCCCCC--chhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhHHHHHHHHHHHHh
Confidence 45999999999999999999998 45799999863 689999999999999999999987 88889999999999999
Q ss_pred CCCCCCCCCCCcCCCCCCCccccccccccccccccCccccccccccccccccCCCCCCCCCcccccccccccccccCCCC
Q 008034 161 SLPGTSGSSGCYTQSPIPEPIVEMDADFEGSARRMNSSFFHRRSFQTTHSWKMDNDPSIPQPRLDRRFSVCDRVIFGHRP 240 (580)
Q Consensus 161 ~~~~~~~~~~~~~~sp~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 240 (580)
+...
T Consensus 94 ~~~~---------------------------------------------------------------------------- 97 (347)
T 1i9z_A 94 GKCT---------------------------------------------------------------------------- 97 (347)
T ss_dssp HTCC----------------------------------------------------------------------------
T ss_pred hccc----------------------------------------------------------------------------
Confidence 5210
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccCCCCCCeEEEEeeee
Q 008034 241 SDYDPSFRWGHRPSDYSRPSDYSRPSDYSRWGSSDDDNGPGDSPSTVLYSPMSYSGSGSMEHGYRMPGNSRYCLVASKQM 320 (580)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~s~qm 320 (580)
++..|++|.++||
T Consensus 98 -------------------------------------------------------------------~~~~Y~~v~s~~l 110 (347)
T 1i9z_A 98 -------------------------------------------------------------------SGPGYVQLRSGQL 110 (347)
T ss_dssp -------------------------------------------------------------------SSCCEEEEEEEEE
T ss_pred -------------------------------------------------------------------CCCceeEEEEeec
Confidence 1236999999999
Q ss_pred cceeEeeeeeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhC
Q 008034 321 VGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKT 400 (580)
Q Consensus 321 vGi~L~Vfvr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~ 400 (580)
+|++|+||+|.+++++|++|++++|+||++|++||||||+|+|.+++++||||||||+||+.+ ..+||+|+.+|++++
T Consensus 111 ~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l 188 (347)
T 1i9z_A 111 VGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGL 188 (347)
T ss_dssp TTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHC
T ss_pred cceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999865 346999999999999
Q ss_pred CCCCCCCCCCCCCCccccccceEEEeccccceeecChHHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCCCcccccccCC
Q 008034 401 RFPRVNSAGDEKSPETILQHDRVIWLGDLNYRIALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPP 480 (580)
Q Consensus 401 ~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpP 480 (580)
.|+.. ..|.+||+|||||||||||+++.+.++++|+.++|..||++|||+.++++|++|.||.|++|+|+|
T Consensus 189 ~f~~~---------~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~P 259 (347)
T 1i9z_A 189 RFRRG---------RSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPP 259 (347)
T ss_dssp CCGGG---------CCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCC
T ss_pred ccCcc---------cccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCC
Confidence 98742 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCCccCCccccceeeecCCceeeeeeccccCcCCCcCceeEEEEEEEechhhhhccc
Q 008034 481 TYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGESRFSDHRPVYGIFWAEVESSHNRLKKSI 555 (580)
Q Consensus 481 TYKy~~~sd~Yd~~~~~~s~K~R~PSWCDRIL~~~~~l~ql~Y~~~e~~~SDHrPV~A~F~v~v~~~~~~~k~~~ 555 (580)
||||+.+++.|++ ++|+|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++++|+.+
T Consensus 260 TYK~~~~~~~yd~-----s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 260 TYKFDIGTDIYDT-----SDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp CBCBCTTSSCBCC-----STTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred CcccCCCCccccc-----cccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 9999999999984 88999999999999998 899999999889999999999999999999998776544
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.5e-82 Score=669.47 Aligned_cols=244 Identities=29% Similarity=0.536 Sum_probs=217.9
Q ss_pred CeEEEEeeeecceeEeeeeeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHH
Q 008034 311 RYCLVASKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRN 390 (580)
Q Consensus 311 ~Y~lV~s~qmvGi~L~Vfvr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN 390 (580)
.|+++.+.+|+|++|+||+|.+++++|++|++++|+||+||++||||||+|||.+++|+||||||||+||+++ ..+||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 3888999999999999999999999999999999999999999999999999999999999999999999864 57899
Q ss_pred HHHHHHHHhCCCCCCCCCCC---CCCCccccccceEEEeccccceeecChHHHHHHHH---hcChHHHHhhhHHHHHHHc
Q 008034 391 ADVMEILRKTRFPRVNSAGD---EKSPETILQHDRVIWLGDLNYRIALNYRSAKALVE---MQNWRVLLENDQLRKEQRQ 464 (580)
Q Consensus 391 ~D~~eIl~~~~F~~~~~~~~---~~~p~~I~dhD~vfw~GDLNYRI~l~~~~v~~Li~---~~~~~~LL~~DQL~~e~~~ 464 (580)
+||.+|++++.|++...... ....+.+.+||+|||||||||||++++++++++++ .++|+.|+++|||+.++++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 99999999999986432110 01123566899999999999999999999999996 4789999999999999999
Q ss_pred CCcCCCCcccccccCCCCCcCCCCCCCCCCCCCCCCCccCCccccceeeecC---Cceeeeeecc-ccCcCCCcCceeEE
Q 008034 465 GRVFVGWNEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWYGE---GLHQLSYVRG-ESRFSDHRPVYGIF 540 (580)
Q Consensus 465 g~vF~gf~Eg~I~FpPTYKy~~~sd~Yd~~~~~~s~K~R~PSWCDRIL~~~~---~l~ql~Y~~~-e~~~SDHrPV~A~F 540 (580)
|++|.||.|++|+|||||||+.|++.||+ ++|+|+|||||||||++. .++++.|.+. ++++||||||+|.|
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt-----s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f 318 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS-----TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLF 318 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc-----cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEE
Confidence 99999999999999999999999999984 789999999999999964 6899999984 89999999999999
Q ss_pred EEEEEechhhhhccccccccc
Q 008034 541 WAEVESSHNRLKKSISYSSSR 561 (580)
Q Consensus 541 ~v~v~~~~~~~k~~~~~~~~~ 561 (580)
.+.|+...+..+...++++..
T Consensus 319 ~v~v~~~~~~ipl~~~~f~~~ 339 (357)
T 2xsw_A 319 RVKVRPGRDNIPLAAGKFDRE 339 (357)
T ss_dssp EEECCCCCSCSCBCSSCCCHH
T ss_pred EEEEecCCccccccccccCHH
Confidence 999998877666666666543
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=4.7e-66 Score=525.54 Aligned_cols=270 Identities=24% Similarity=0.415 Sum_probs=237.2
Q ss_pred eeEEEEEEEeecCCCCCCCCCCcccccCC--CCCCcEEEEeeEeeEecCCCCccccCCCCchHHHHHHHHHHhcCCCCCC
Q 008034 89 QNHSVFVATWNVAGRSPPSNLSLDDWLHA--SPPADIYVLGFQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLNSLPGTS 166 (580)
Q Consensus 89 ~~~ri~VGTWNVgGk~P~~dldLddWL~~--~~~~DIyvvGfQEiVpLNAgNVlgaED~~p~~kWe~lIr~~LN~~~~~~ 166 (580)
++++|+|+||||+|..|+. ||.+||.. ...||||||||||++ +++++. .....|++.|.++|+.
T Consensus 5 ~~~~i~V~T~Nv~~~~~~~--~l~~wl~~~~~~~pDI~viglQEv~-~~~~~~------~~~~~w~~~l~~~L~~----- 70 (282)
T 2imq_X 5 AQLSVHTVSWNSGHERAPT--NLEELLGLNSGETPDVIAVAVQGFG-FQTDKP------QQGPACVKNFQSLLTS----- 70 (282)
T ss_dssp SEEEEEEEEEEEETCCCCS--CCHHHHTCTTSCCCSEEEEEEEESC-TTTCTT------CCHHHHHHHHHHHHHH-----
T ss_pred CCcEEEEEEEeCCCCcCch--hHHHHhcccccCCCCEEEEEeeeec-cccccc------hhhHHHHHHHHHhcCC-----
Confidence 5789999999999888765 58899974 468999999999997 566552 3478999999999862
Q ss_pred CCCCCcCCCCCCCccccccccccccccccCccccccccccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCC
Q 008034 167 GSSGCYTQSPIPEPIVEMDADFEGSARRMNSSFFHRRSFQTTHSWKMDNDPSIPQPRLDRRFSVCDRVIFGHRPSDYDPS 246 (580)
Q Consensus 167 ~~~~~~~~sp~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 246 (580)
T Consensus 71 -------------------------------------------------------------------------------- 70 (282)
T 2imq_X 71 -------------------------------------------------------------------------------- 70 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccCCCCCCeEEEEe--eeeccee
Q 008034 247 FRWGHRPSDYSRPSDYSRPSDYSRWGSSDDDNGPGDSPSTVLYSPMSYSGSGSMEHGYRMPGNSRYCLVAS--KQMVGIF 324 (580)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~s--~qmvGi~ 324 (580)
..|++|.+ .+|+|++
T Consensus 71 ---------------------------------------------------------------~~Y~~v~~~~~~~~G~~ 87 (282)
T 2imq_X 71 ---------------------------------------------------------------KGYTKLKNTITETMGLT 87 (282)
T ss_dssp ---------------------------------------------------------------TTEEEEEEEECSSEEEE
T ss_pred ---------------------------------------------------------------CceEEEEeccCceeEEE
Confidence 13777877 8999999
Q ss_pred EeeeeeccccccccceEEeEEeecccccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCC
Q 008034 325 LTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPR 404 (580)
Q Consensus 325 L~Vfvr~~l~~~I~~v~~s~V~tGi~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~ 404 (580)
|+||+|.++.+.|+++.+ +|++|.+||||+|+++|.+++++||||||||+|++.+ ..+|++++..|++++.+
T Consensus 88 l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~R~~~~~~I~~~~~~-- 159 (282)
T 2imq_X 88 VYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STNTKYAYDTRLDYSKK-- 159 (282)
T ss_dssp EEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTSSSSSCCGGGCTTSS--
T ss_pred EEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHHHHHHHHHHHHhhhc--
Confidence 999999999988888765 5678899999999999999999999999999999643 34689999999875532
Q ss_pred CCCCCCCCCCccccccceEEEeccccceeecChHHHHHHHHhcChHHHHhhhHHHHHHHcCCcCCCCcccccccCCCCCc
Q 008034 405 VNSAGDEKSPETILQHDRVIWLGDLNYRIALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKY 484 (580)
Q Consensus 405 ~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~~v~~Li~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy 484 (580)
+.++|+|||+||||||++++.+.++++|+.++|..|+++|||..+++ |.+|.||.|++|+|+|||||
T Consensus 160 ------------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~ 226 (282)
T 2imq_X 160 ------------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKF 226 (282)
T ss_dssp ------------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCB
T ss_pred ------------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccc
Confidence 34679999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccCCccccceeeec---CCceeeeeecc-ccCcCCCcCceeEEEEEE
Q 008034 485 STNSDRYAGDDMHPKEKRRTPAWCDRILWYG---EGLHQLSYVRG-ESRFSDHRPVYGIFWAEV 544 (580)
Q Consensus 485 ~~~sd~Yd~~~~~~s~K~R~PSWCDRIL~~~---~~l~ql~Y~~~-e~~~SDHrPV~A~F~v~v 544 (580)
+.+++.|++ +|+|||||||||++ ..++++.|.+. ++.+|||+||+|.|.+++
T Consensus 227 ~~~~~~y~~--------~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 227 KPNTDEYDL--------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp CTTSSCBCT--------TSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred cCCCccccc--------cCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 999999973 69999999999996 46899999987 789999999999999864
No 6
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.16 E-value=8.5e-11 Score=112.03 Aligned_cols=68 Identities=19% Similarity=0.080 Sum_probs=44.1
Q ss_pred ccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccce
Q 008034 353 LGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYR 432 (580)
Q Consensus 353 ~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYR 432 (580)
.+..+.+.+.+.+.+..|.++|+||.+.... ...|...+..++..+... ........+|++||||-+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~-----------~~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREI-----------IAQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHH-----------HHHSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhh-----------hhccCCCcEEEeccCCCC
Confidence 3457888899999999999999999987532 233555555554322100 001123569999999965
Q ss_pred e
Q 008034 433 I 433 (580)
Q Consensus 433 I 433 (580)
-
T Consensus 170 ~ 170 (256)
T 4fva_A 170 D 170 (256)
T ss_dssp G
T ss_pred c
Confidence 3
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.10 E-value=7.8e-10 Score=106.89 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=48.0
Q ss_pred ccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccce
Q 008034 353 LGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYR 432 (580)
Q Consensus 353 ~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYR 432 (580)
+..+|++.+++.+.+..|+++|+||.+..... ..|..++..|++.+. ....+|++||||-.
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~--~~r~~q~~~l~~~~~-----------------~~~~~il~GDfN~~ 180 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCET--EDMGKNIQTILNRTQ-----------------NSNLKILMGDFNTD 180 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTT--CCHHHHHHHHHTSSC-----------------SCCEEEEEEECCCC
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCCh--HHHHHHHHHHHHHHh-----------------cCCcEEEEeECCCC
Confidence 45689999999999999999999999874322 247788888876431 13679999999986
Q ss_pred e
Q 008034 433 I 433 (580)
Q Consensus 433 I 433 (580)
-
T Consensus 181 ~ 181 (266)
T 3teb_A 181 A 181 (266)
T ss_dssp T
T ss_pred C
Confidence 4
No 8
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.68 E-value=1.5e-07 Score=89.15 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=48.2
Q ss_pred cccccCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccc
Q 008034 350 MGYLGNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDL 429 (580)
Q Consensus 350 ~G~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDL 429 (580)
.+....++.+.+.+.+.+..|.++|+||.++... ...|...+..|++.+.- ......||++|||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~--------------~~~~~pvIl~GDf 159 (256)
T 4gz1_A 96 PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE--------------APDSTTVIFAGDT 159 (256)
T ss_dssp TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH--------------SCTTSEEEEEEEC
T ss_pred CcccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh--------------ccCcceEEEeCcc
Confidence 3445668889999999999999999999987543 33466677777665420 1122468999999
Q ss_pred cce
Q 008034 430 NYR 432 (580)
Q Consensus 430 NYR 432 (580)
|..
T Consensus 160 N~~ 162 (256)
T 4gz1_A 160 NLR 162 (256)
T ss_dssp CCC
T ss_pred CCC
Confidence 964
No 9
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.47 E-value=3.4e-07 Score=85.16 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=44.6
Q ss_pred cCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccce
Q 008034 354 GNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYR 432 (580)
Q Consensus 354 GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYR 432 (580)
...+.+.+.+.+.+..|.++++||.+.... ...|...+.+|++.+. .......+|++||||-.
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~--------------~~~~~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIK--------------EAPEDAIVIFAGDTNLR 156 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHH--------------HSCTTEEEEEEEECCCC
T ss_pred ccceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHH--------------hcCCCCCEEEEEecCCC
Confidence 345677888889999999999999987543 3456677777776542 01112468999999953
No 10
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.36 E-value=2.3e-06 Score=84.59 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=48.9
Q ss_pred ccCceEEEEEEEEcCEEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecc
Q 008034 353 LGNKGSIAVSMLLHQTSFCFICSHLTSGQKE----GDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGD 428 (580)
Q Consensus 353 ~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~----~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GD 428 (580)
..++|++.+.+.+.+..|.++|+||.++... .....|..++..|.+.+.=. .+.....+|++||
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------------~~~~~~pvIl~GD 195 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK------------NIPKDEIIFIGGD 195 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH------------TCCTTSEEEEEEE
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh------------CCCCCCeEEEEee
Confidence 4579999999999999999999999987432 12345777777776543100 0112357999999
Q ss_pred ccceee
Q 008034 429 LNYRIA 434 (580)
Q Consensus 429 LNYRI~ 434 (580)
||-.-.
T Consensus 196 fN~~~~ 201 (301)
T 1zwx_A 196 LNVNYG 201 (301)
T ss_dssp CCCCTT
T ss_pred CCCCCC
Confidence 997654
No 11
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.21 E-value=2.1e-06 Score=87.32 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=50.2
Q ss_pred cccCceEEEEEEEEcCEEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEec
Q 008034 352 YLGNKGSIAVSMLLHQTSFCFICSHLTSGQKE----GDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLG 427 (580)
Q Consensus 352 ~~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~----~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~G 427 (580)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|...+.-. .+.....||++|
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------------~~~~~~pvIl~G 213 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK------------NIPKDETVYIGG 213 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH------------TCCTTSCEEEEE
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh------------ccCCCCeEEEEe
Confidence 36789999999999999999999999986421 13456888887776643100 011134689999
Q ss_pred ccccee
Q 008034 428 DLNYRI 433 (580)
Q Consensus 428 DLNYRI 433 (580)
|||-.-
T Consensus 214 DfN~~~ 219 (317)
T 3i41_A 214 DLNVNK 219 (317)
T ss_dssp ECCCCT
T ss_pred ECCCCC
Confidence 999765
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.17 E-value=8.8e-06 Score=85.01 Aligned_cols=66 Identities=20% Similarity=0.125 Sum_probs=44.5
Q ss_pred cCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccce
Q 008034 354 GNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYR 432 (580)
Q Consensus 354 GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYR 432 (580)
...+++.+.+.+.+..|+++|+||.++.. ....|...+..++..+.-.. .......||++||||-+
T Consensus 210 ~~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~-----------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 210 MYRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREII-----------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHH-----------HHCTTCEEEEEEECCCC
T ss_pred ccceEEEEEEEECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhh-----------hcCCCCCeEEeecCCCC
Confidence 34678889999999999999999988753 23457666666654321000 00112469999999964
No 13
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.14 E-value=3.4e-05 Score=74.46 Aligned_cols=61 Identities=23% Similarity=0.177 Sum_probs=44.1
Q ss_pred ccCceEEEEEEEEc--CEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccc
Q 008034 353 LGNKGSIAVSMLLH--QTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLN 430 (580)
Q Consensus 353 ~GNKGaV~ir~~l~--~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLN 430 (580)
...++++.+.+... +..|.++|+||.+.. ...|...+..|+..+. ..+.. +.+|++||||
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~-------------~~~~~-~pvil~GDfN 168 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELH-------------DKIAQ-YPTLLMGDFN 168 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTH-------------HHHHH-SCEEEEEECC
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH-------------HHcCC-CCEEEEeeCC
Confidence 45788999999884 678999999998763 2457778888876542 01111 2699999999
Q ss_pred c
Q 008034 431 Y 431 (580)
Q Consensus 431 Y 431 (580)
-
T Consensus 169 ~ 169 (257)
T 3l1w_A 169 A 169 (257)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.14 E-value=1.3e-05 Score=77.18 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=44.4
Q ss_pred cCceEEEEEEEEcCEEEEEEeecCCCCCCCcc---HHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccc
Q 008034 354 GNKGSIAVSMLLHQTSFCFICSHLTSGQKEGD---QLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLN 430 (580)
Q Consensus 354 GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d---~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLN 430 (580)
..++.+.+.+.+.+..|+++|+||.++....+ ...|...+.+|...+.- .......+|++||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~-------------~~~~~~~~Il~GDFN 153 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLET-------------ELKRDNPVLIMGDMN 153 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHH-------------HCCTTSCEEEEEECC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHH-------------hhhCCCCEEEEeECC
Confidence 45788999999999999999999998763221 12355555555443210 001235699999999
Q ss_pred cee
Q 008034 431 YRI 433 (580)
Q Consensus 431 YRI 433 (580)
-..
T Consensus 154 ~~~ 156 (268)
T 1ako_A 154 ISP 156 (268)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 15
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.12 E-value=1.5e-05 Score=78.75 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=47.1
Q ss_pred ccCceEEEEEEEEcCEEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecc
Q 008034 353 LGNKGSIAVSMLLHQTSFCFICSHLTSGQKE----GDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGD 428 (580)
Q Consensus 353 ~GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~----~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GD 428 (580)
...+|++.+.+.+.+..|.++|+||.+.... .....|...+..|.+.+.=. .+.....+|++||
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------------~~~~~~pvil~GD 195 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK------------NIPNNEYVLIGGD 195 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH------------TCCTTSCEEEEEE
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh------------cCCCCCEEEEEee
Confidence 4578999999999999999999999987421 13345777777776533100 0011246899999
Q ss_pred cccee
Q 008034 429 LNYRI 433 (580)
Q Consensus 429 LNYRI 433 (580)
||-.-
T Consensus 196 fN~~~ 200 (306)
T 2ddr_A 196 MNVNK 200 (306)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99765
No 16
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.06 E-value=2.5e-05 Score=76.00 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=42.2
Q ss_pred ccCceEEEEEEEE--cCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccc
Q 008034 353 LGNKGSIAVSMLL--HQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLN 430 (580)
Q Consensus 353 ~GNKGaV~ir~~l--~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLN 430 (580)
..+++++.+.+.. .+..|+++|+||.+.. ...|......|+..+. .+.....+|++||||
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~--------------~~~~~~pvIl~GDfN 174 (267)
T 3g6s_A 113 VCVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIK--------------EIVGERPAVVTGDFN 174 (267)
T ss_dssp SSCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHH--------------HHTTTSCEEEEEECS
T ss_pred cCcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH--------------HhcCCCCEEEEeECC
Confidence 3467888888885 5789999999998753 3456666666655431 011124589999999
Q ss_pred c
Q 008034 431 Y 431 (580)
Q Consensus 431 Y 431 (580)
-
T Consensus 175 ~ 175 (267)
T 3g6s_A 175 V 175 (267)
T ss_dssp S
T ss_pred C
Confidence 5
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=0.00024 Score=70.89 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=41.9
Q ss_pred cCceEEEEEEEE--cCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCC-CCCCCCCCCCCCCccccccceEEEecccc
Q 008034 354 GNKGSIAVSMLL--HQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTR-FPRVNSAGDEKSPETILQHDRVIWLGDLN 430 (580)
Q Consensus 354 GNKGaV~ir~~l--~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~-F~~~~~~~~~~~p~~I~dhD~vfw~GDLN 430 (580)
-+++++.+.|.. .+..|+++|+||.+.. ...|......|+..+. +.. . ....+|++||||
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~~~--------~-----~~~pvIl~GDfN 180 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKELGR--------G-----KNLPAILTGDFN 180 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHTTT--------T-----SCCCEEEEEECS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHHhc--------C-----CCCcEEEEEeCC
Confidence 467888888884 6789999999998532 3457777776665431 100 0 124589999999
Q ss_pred ce
Q 008034 431 YR 432 (580)
Q Consensus 431 YR 432 (580)
-.
T Consensus 181 ~~ 182 (298)
T 3mpr_A 181 VD 182 (298)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.21 E-value=0.0014 Score=62.48 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=30.1
Q ss_pred EEEEEeecCCCCCCCccH--HHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccceee
Q 008034 369 SFCFICSHLTSGQKEGDQ--LRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRIA 434 (580)
Q Consensus 369 s~cFV~~HLaAg~~~~d~--~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~ 434 (580)
.|.++|+||.++.....+ ..|...+.++...+. ..+.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~-------------~~~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVR-------------DEMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHH-------------HHHTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHH-------------HHhcCCCCEEEEeECCCCCc
Confidence 699999999987642221 224444444433211 00012346999999997543
No 19
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=96.72 E-value=0.012 Score=56.48 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=40.6
Q ss_pred cCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccce
Q 008034 354 GNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYR 432 (580)
Q Consensus 354 GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYR 432 (580)
-..|.+.+.+.+.+..|.++|+|+..+.. ...+...+.++++.+ ....+|++||||-.
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~------------------~~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM------------------GPKRLIFGGDANAK 158 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT------------------CSSSEEEEEECCCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh------------------CCCcEEEEeccccC
Confidence 35677888888888899999999998752 123444566665532 11358999999954
No 20
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=96.51 E-value=0.0065 Score=56.97 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=35.0
Q ss_pred EEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccce
Q 008034 358 SIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYR 432 (580)
Q Consensus 358 aV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYR 432 (580)
.+.+.+.+.+..|.++|+|+.++.. . | -+.++++.+.=. ....+|++||||-.
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~-~--~~~~l~~~l~~~---------------~~~~~Il~GDFN~~ 149 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----P-R--FIKQVLSDLQRD---------------LDSHTLIMGDFNTP 149 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----H-H--HHHHHHHHTTTT---------------CCTTEEEEEECSSC
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----H-H--HHHHHHHHHHhc---------------cCCCEEEEccCCCC
Confidence 5667777888999999999988642 1 2 133444443200 02458999999974
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=96.35 E-value=0.006 Score=59.60 Aligned_cols=34 Identities=21% Similarity=0.008 Sum_probs=22.0
Q ss_pred ccceeeecCCce-eeeeec-cccCcCCCcCceeEEE
Q 008034 508 CDRILWYGEGLH-QLSYVR-GESRFSDHRPVYGIFW 541 (580)
Q Consensus 508 CDRIL~~~~~l~-ql~Y~~-~e~~~SDHrPV~A~F~ 541 (580)
-|+||....-.. ...+.- .+...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 799998753221 223322 2356899999999875
No 22
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.33 E-value=0.00097 Score=75.61 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred cCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCC-CCCCCCCCCCCCCccccccceEEEeccccce
Q 008034 366 HQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTR-FPRVNSAGDEKSPETILQHDRVIWLGDLNYR 432 (580)
Q Consensus 366 ~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~-F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYR 432 (580)
.+..|+++|+||.++....+ .|-.....|++.+. +..... ......-.....||++||||--
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~--~R~~Qa~~l~~~l~~~~~~~~---~~~~~~~~~~~pvIl~GDFNs~ 607 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFND--VKTFQVGVLLDHLETLLKEET---SHNFRQDIKKFPVLICGDFNSY 607 (727)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCCc--hHHHHHHHHHHHHHHHHHHhc---ccccccccCCCceEEecccCCC
Confidence 36789999999988643222 24444444444331 100000 0000000112359999999954
No 23
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=95.83 E-value=0.011 Score=59.42 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=23.3
Q ss_pred EEEEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEeeE
Q 008034 93 VFVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 93 i~VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEiV 132 (580)
+-|.||||.|......-.|-+||. ...||| |+|||+-
T Consensus 62 lrv~t~Nv~g~~~~~~~~i~~~i~-~~~~DI--i~LQE~~ 98 (318)
T 1hd7_A 62 LKICSWNVDGLRAWIKKKGLDWVK-EEAPDI--LCLQETK 98 (318)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHH-HHCCSE--EEEECCC
T ss_pred eEEEEEecCcchhhhhhhHHHHHH-hhCCCE--EEEEEcc
Confidence 556799999864221123666663 235886 6789984
No 24
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=95.81 E-value=0.016 Score=62.83 Aligned_cols=35 Identities=14% Similarity=-0.051 Sum_probs=22.2
Q ss_pred ccceeeecCCce-eeeee-ccccCcCCCcCceeEEEE
Q 008034 508 CDRILWYGEGLH-QLSYV-RGESRFSDHRPVYGIFWA 542 (580)
Q Consensus 508 CDRIL~~~~~l~-ql~Y~-~~e~~~SDHrPV~A~F~v 542 (580)
-|+||....-.. ...+. ..+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 599997653221 22222 234578999999998753
No 25
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=95.63 E-value=0.012 Score=55.87 Aligned_cols=37 Identities=22% Similarity=0.079 Sum_probs=23.5
Q ss_pred ccccceeeecCCc-eeeeeecc-ccCcCCCcCceeEEEE
Q 008034 506 AWCDRILWYGEGL-HQLSYVRG-ESRFSDHRPVYGIFWA 542 (580)
Q Consensus 506 SWCDRIL~~~~~l-~ql~Y~~~-e~~~SDHrPV~A~F~v 542 (580)
.--|+||....-. ....+... +...|||.||.+.|.+
T Consensus 218 ~rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~ 256 (259)
T 2jc5_A 218 WRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDY 256 (259)
T ss_dssp ECCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESC
T ss_pred eEEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEec
Confidence 3479999874311 12233222 4678999999998864
No 26
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=94.64 E-value=0.11 Score=50.07 Aligned_cols=36 Identities=31% Similarity=0.557 Sum_probs=23.2
Q ss_pred EEEEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEee
Q 008034 93 VFVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEI 131 (580)
Q Consensus 93 i~VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEi 131 (580)
+-|.||||+|...+..-.|-+||.. ..||| |++||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 3466999999543222247778742 35786 568997
No 27
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=94.31 E-value=0.089 Score=50.03 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=20.8
Q ss_pred EEEEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEeeE
Q 008034 93 VFVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 93 i~VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEiV 132 (580)
+-|.||||.|...... .|.+||. ...||| |+|||+-
T Consensus 2 lrv~t~Nv~g~~~~~~-~i~~~i~-~~~~Di--i~lQE~~ 37 (257)
T 2voa_A 2 LKIATFNVNSIRSRLH-IVIPWLK-ENKPDI--LCMQETK 37 (257)
T ss_dssp EEEEEEECSCGGGTHH-HHHHHHH-HHCCSE--EEEECCC
T ss_pred eEEEEEecCChHHHHH-HHHHHHh-hcCCCE--EEEEEee
Confidence 3467999998642211 2344442 135785 5689983
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=92.94 E-value=0.38 Score=46.82 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.8
Q ss_pred EEEEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEee
Q 008034 93 VFVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEI 131 (580)
Q Consensus 93 i~VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEi 131 (580)
+-|.||||+|..-..+. |.+||.. ..||| |++||+
T Consensus 8 mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred ceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 55779999997543333 7888853 45786 567997
No 29
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=90.82 E-value=0.25 Score=47.91 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=19.9
Q ss_pred ceEEEEEEEEc---CEEEEEEeecCCCCC
Q 008034 356 KGSIAVSMLLH---QTSFCFICSHLTSGQ 381 (580)
Q Consensus 356 KGaV~ir~~l~---~ts~cFV~~HLaAg~ 381 (580)
.+.+.+.|... +..|.+||+||.+..
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~ 139 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSD 139 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGG
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCC
Confidence 55666777765 568999999999753
No 30
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=84.88 E-value=0.16 Score=46.48 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=21.6
Q ss_pred EEEEEeecCCCCCCCC---C-CcccccCCCCCCcEEEEeeEee
Q 008034 93 VFVATWNVAGRSPPSN---L-SLDDWLHASPPADIYVLGFQEI 131 (580)
Q Consensus 93 i~VGTWNVgGk~P~~d---l-dLddWL~~~~~~DIyvvGfQEi 131 (580)
+=|.||||.|..+... + .|.+||. ...||| |+|||+
T Consensus 4 l~v~t~Ni~g~~~~~~~~r~~~i~~~i~-~~~pDI--i~LQEv 43 (250)
T 4f1h_A 4 LSIISWNVDGLDTLNLADRARGLCSYLA-LYTPDV--VFLQEL 43 (250)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHH-HcCCCE--EEEEeC
Confidence 4456999998753220 0 1345553 235885 779997
No 31
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=82.43 E-value=1.4 Score=46.83 Aligned_cols=75 Identities=9% Similarity=0.039 Sum_probs=38.9
Q ss_pred CEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCC-CCCCCCCCCCCCCccccccceEEEeccccceeecChHHHHHHHH
Q 008034 367 QTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTR-FPRVNSAGDEKSPETILQHDRVIWLGDLNYRIALNYRSAKALVE 445 (580)
Q Consensus 367 ~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~-F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI~l~~~~v~~Li~ 445 (580)
+..|+++|+||..+....+ -|-.+...|++.+. |..........+. .-...-.||++||||-- +...+-+++.
T Consensus 194 ~~~l~V~nTHL~~~p~~~~--vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~-~~~~~~PvIl~GDFNs~---P~s~vy~~L~ 267 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEYSD--VKLIQTMMFVSEVKNILEKASSRPGSPT-ADPNSIPLVLCADLNSL---PDSGVVEYLS 267 (398)
T ss_dssp CCEEEEEEEECCCCTTCHH--HHHHHHHHHHHHHHHHHCC--------------CCCEEEEEECSCC---TTSHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCCHH--HHHHHHHHHHHHHHHHHHHhhccccccc-ccCCCCceEEEeeCCCC---CCCHHHHHHh
Confidence 4569999999999754333 36667766665431 1100000000000 00012358999999954 4455556665
Q ss_pred hc
Q 008034 446 MQ 447 (580)
Q Consensus 446 ~~ 447 (580)
.+
T Consensus 268 ~G 269 (398)
T 3ngq_A 268 NG 269 (398)
T ss_dssp HT
T ss_pred cC
Confidence 44
No 32
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=82.11 E-value=0.29 Score=45.59 Aligned_cols=35 Identities=26% Similarity=0.184 Sum_probs=22.7
Q ss_pred ccceeeecCC--ceeeeee-----c--cccCcCCCcCceeEEEE
Q 008034 508 CDRILWYGEG--LHQLSYV-----R--GESRFSDHRPVYGIFWA 542 (580)
Q Consensus 508 CDRIL~~~~~--l~ql~Y~-----~--~e~~~SDHrPV~A~F~v 542 (580)
-|+||+++.. +....+. . .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 6999998653 3322322 1 12346999999999986
No 33
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=81.99 E-value=0.27 Score=51.02 Aligned_cols=39 Identities=28% Similarity=0.495 Sum_probs=24.4
Q ss_pred cCCcc-ccceeeecCCceeeeee-----cc---ccCcCCCcCceeEEEE
Q 008034 503 RTPAW-CDRILWYGEGLHQLSYV-----RG---ESRFSDHRPVYGIFWA 542 (580)
Q Consensus 503 R~PSW-CDRIL~~~~~l~ql~Y~-----~~---e~~~SDHrPV~A~F~v 542 (580)
+.|.| =|+||+.+. +....+. +. ....|||.||.|.|.+
T Consensus 315 ~~~~~RIDyIf~s~~-l~~~~~~vi~~~ri~~~~~~pSDH~pV~A~FSa 362 (362)
T 4gew_A 315 HGAKMRFDRLYWSGP-LDKVKFTLEGRQRIRSCLCFPSDHWAINATFFA 362 (362)
T ss_dssp SCCEECCEEEEEESS-CCEEEEEEECCSCCTTTSSCSCSSCEEEEEEEC
T ss_pred CCCCcceEEEEEcCC-cceeEEEEEeeeecCCCCCCCCcccCEEEEEcC
Confidence 33444 499999864 4433332 11 1235999999999974
No 34
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=74.87 E-value=4.6 Score=40.65 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=36.3
Q ss_pred cCceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccc
Q 008034 354 GNKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLN 430 (580)
Q Consensus 354 GNKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLN 430 (580)
-..|++.|+ +.+ +.|++.||.+... .+ |..-+..|...+. ... ..| . ..+.-.+.+||||
T Consensus 120 ~~R~~l~i~--i~g--~~f~s~Hl~~~~~--~e--a~~~v~~I~~~~~--~~~-----~~~-~-~~~~~~ii~GDFN 179 (261)
T 1sr4_B 120 QSRPAVGIR--IGT--DVFFTVHALATGG--SD--AVSLIRNIFTTFN--SSS-----SPP-E-RRVYSWMVVGDFN 179 (261)
T ss_dssp CCCCEEEEE--ETT--EEEEEEECCTTTT--TT--HHHHHHHHHHHHH--C--------CG-G-GGGCEEEEEEECS
T ss_pred cCcceEEEE--ECC--eEEEEeCCCCCCC--ch--HHHHHHHHHHHHH--hcc-----cCC-c-ccCCcEEEEeeCC
Confidence 367888884 777 9999999999752 12 4444555544221 000 001 1 1235789999999
No 35
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=72.87 E-value=0.37 Score=45.73 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=21.5
Q ss_pred EEEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEeeE
Q 008034 94 FVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 94 ~VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEiV 132 (580)
-|.||||.|..... -.|.+||. ...||| |+|||+-
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~-~~~~Di--i~LQE~~ 36 (268)
T 1ako_A 2 KFVSFNINGLRARP-HQLEAIVE-KHQPDV--IGLQETK 36 (268)
T ss_dssp EEEEEECSCGGGCH-HHHHHHHH-HHCCSE--EEEECCC
T ss_pred EEEEEehhHHHHHH-HHHHHHHH-HcCCCE--EEEEecc
Confidence 37899999863211 12445553 135885 7899983
No 36
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=70.66 E-value=0.45 Score=44.90 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=23.7
Q ss_pred EEEEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEeeE
Q 008034 93 VFVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 93 i~VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEiV 132 (580)
+-|.||||.|......-.|.++|.. ..||| |+|||+-
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~~ 38 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQELK 38 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECCC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEec
Confidence 4467999998532211146677642 46886 6789994
No 37
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=68.56 E-value=0.56 Score=45.65 Aligned_cols=56 Identities=14% Similarity=0.045 Sum_probs=34.2
Q ss_pred CceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccccee
Q 008034 355 NKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRI 433 (580)
Q Consensus 355 NKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI 433 (580)
..|++.|.+.+ ..+.++|+|++.+... ......+.+++..+. ...+|++||||---
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~------------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR------------------GARVVICADTNAHS 132 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT------------------TSCEEEEEECCCCC
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC------------------CCcEEEEEeccccc
Confidence 46776666543 4688999999998642 123333344433210 13589999999543
No 38
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=65.17 E-value=0.56 Score=45.44 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=23.0
Q ss_pred EEEEEeecCCCCCCCCCCcccccCCCCCCcEEEEeeEeeE
Q 008034 93 VFVATWNVAGRSPPSNLSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 93 i~VGTWNVgGk~P~~dldLddWL~~~~~~DIyvvGfQEiV 132 (580)
+-|.||||.|-.....-.|-++|. ...|| ||+|||+-
T Consensus 29 l~v~t~Ni~~~~~~~~~~i~~~i~-~~~~D--Ii~LQE~~ 65 (285)
T 2o3h_A 29 LKIASWNVDGLRAWIKKKGLDWVK-EEAPD--ILCLQETK 65 (285)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHH-HHCCS--EEEEECCC
T ss_pred eEEEEEecccChhhhhhhHHHHHH-hcCCC--EEEEEEee
Confidence 556799999853221112666663 23588 56789984
No 39
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=63.82 E-value=0.77 Score=42.58 Aligned_cols=33 Identities=18% Similarity=-0.029 Sum_probs=20.9
Q ss_pred ccceeeecCCce-eeeeeccccCcCCCcCceeEE
Q 008034 508 CDRILWYGEGLH-QLSYVRGESRFSDHRPVYGIF 540 (580)
Q Consensus 508 CDRIL~~~~~l~-ql~Y~~~e~~~SDHrPV~A~F 540 (580)
-|+||....-.. ...+.......|||.||.+.|
T Consensus 204 ID~i~~s~~~~~~~~~~~v~~~~~SDH~pv~~~l 237 (238)
T 1vyb_A 204 IDHIVGSKALLSKCKRTEIITNYLSDHSAIKLEL 237 (238)
T ss_dssp CEEEEEEGGGGGGEEEEEEECCSSSSSCEEEEEE
T ss_pred eEEEEeCHHHHhhhhhceeecCCCCCcccEEEEe
Confidence 689998754221 222222245789999999876
No 40
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=62.01 E-value=2.4 Score=42.73 Aligned_cols=37 Identities=38% Similarity=0.570 Sum_probs=26.4
Q ss_pred EEEeecCCCCCCC----CCCcccccCCCCCCcEEEEeeEeeEe
Q 008034 95 VATWNVAGRSPPS----NLSLDDWLHASPPADIYVLGFQEIVP 133 (580)
Q Consensus 95 VGTWNVgGk~P~~----dldLddWL~~~~~~DIyvvGfQEiVp 133 (580)
|+|||+-|-.+.. +..+..||.....|||.+ +||+--
T Consensus 7 v~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIla--LQEa~~ 47 (261)
T 1sr4_B 7 VATWNLQGSSAVNESKWNINVRQLLSGEQGADILM--VQEAGS 47 (261)
T ss_dssp EEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEE--EESCCS
T ss_pred EEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEE--EecCCC
Confidence 7899999953322 124678887767899866 699853
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=59.89 E-value=1.1 Score=42.28 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=20.5
Q ss_pred ccceeeecCCce-eeeeecc-----ccCcCCCcCceeEEE
Q 008034 508 CDRILWYGEGLH-QLSYVRG-----ESRFSDHRPVYGIFW 541 (580)
Q Consensus 508 CDRIL~~~~~l~-ql~Y~~~-----e~~~SDHrPV~A~F~ 541 (580)
-|+||....-.. ...+.-. ....|||.||.+.|.
T Consensus 217 ID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 217 GDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 799998642110 1222111 136899999999875
No 42
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=57.23 E-value=0.96 Score=45.19 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=30.2
Q ss_pred EEEEEEeecCCCCCCCc-cHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEecccccee
Q 008034 368 TSFCFICSHLTSGQKEG-DQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYRI 433 (580)
Q Consensus 368 ts~cFV~~HLaAg~~~~-d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYRI 433 (580)
..|.++|+||.++.... ....|.+.+..|...+. .+.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~--------------~~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK--------------GLASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHH--------------HHHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHH--------------hcccCCCEEEEeeCCCCC
Confidence 46999999998765321 12235554455543221 111125699999999643
No 43
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=56.09 E-value=9.6 Score=36.82 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.0
Q ss_pred cCcCCCcCceeEEEE
Q 008034 528 SRFSDHRPVYGIFWA 542 (580)
Q Consensus 528 ~~~SDHrPV~A~F~v 542 (580)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 478999999999875
No 44
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=55.60 E-value=1 Score=48.80 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=22.9
Q ss_pred EEEEEeecCCCCCCC--C-CCcccccCCCCCCcEEEEeeEeeE
Q 008034 93 VFVATWNVAGRSPPS--N-LSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 93 i~VGTWNVgGk~P~~--d-ldLddWL~~~~~~DIyvvGfQEiV 132 (580)
+-|.||||+|..... + -.|.+||.. ..||| |+|||+-
T Consensus 150 LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEtk 189 (467)
T 2j63_A 150 YKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQETK 189 (467)
T ss_dssp EEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECCC
T ss_pred eEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEecc
Confidence 556799999842111 0 136677742 35885 6789983
No 45
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=53.97 E-value=6.9 Score=37.21 Aligned_cols=36 Identities=22% Similarity=0.065 Sum_probs=24.4
Q ss_pred cccceeeecCCceeeeeecccc----CcCCCcCceeEEEEE
Q 008034 507 WCDRILWYGEGLHQLSYVRGES----RFSDHRPVYGIFWAE 543 (580)
Q Consensus 507 WCDRIL~~~~~l~ql~Y~~~e~----~~SDHrPV~A~F~v~ 543 (580)
--|+||..+. +....+..... ..|||.||.|.-..+
T Consensus 222 riD~I~~s~~-~~~~~~~v~~~~~~~~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 222 KIDFIFVTPQ-VLVKSCEIPAEVPEALLSDHNPQLADLELE 261 (267)
T ss_dssp CCEEEEECTT-SEEEEEEECCCCSSSCCCSBCCEEEEEEEC
T ss_pred cEeEEEeCCC-ceEEEEEEecCCCCCCCCCcccEEEEEEec
Confidence 3699998754 55555543222 469999999876543
No 46
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=53.88 E-value=1.8 Score=42.58 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=12.9
Q ss_pred CcCCCcCceeEEEEEEE
Q 008034 529 RFSDHRPVYGIFWAEVE 545 (580)
Q Consensus 529 ~~SDHrPV~A~F~v~v~ 545 (580)
..|||.||.+....+++
T Consensus 276 ~~SDH~PV~v~~~~~~~ 292 (298)
T 3mpr_A 276 TPSDHFPVKVELVFDLE 292 (298)
T ss_dssp CSSSBCCEEEEEEECSS
T ss_pred cCCCCCcEEEEEecchh
Confidence 56999999987665543
No 47
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=53.74 E-value=1 Score=43.21 Aligned_cols=35 Identities=17% Similarity=-0.111 Sum_probs=22.0
Q ss_pred ccceeeecCCcee-eeee-ccccCcCCCcCceeEEEE
Q 008034 508 CDRILWYGEGLHQ-LSYV-RGESRFSDHRPVYGIFWA 542 (580)
Q Consensus 508 CDRIL~~~~~l~q-l~Y~-~~e~~~SDHrPV~A~F~v 542 (580)
-|+||....-... .... ..+...|||.||.+.|..
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhh
Confidence 7999976543221 1121 123578999999988754
No 48
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=50.17 E-value=4.4 Score=40.84 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=37.9
Q ss_pred CceEEEEEEEEcCEEEEEEeecCCCCCCCccHHHHHHHHHHHHHhCCCCCCCCCCCCCCCccccccceEEEeccccce
Q 008034 355 NKGSIAVSMLLHQTSFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNYR 432 (580)
Q Consensus 355 NKGaV~ir~~l~~ts~cFV~~HLaAg~~~~d~~rRN~D~~eIl~~~~F~~~~~~~~~~~p~~I~dhD~vfw~GDLNYR 432 (580)
....++|++ . .+.|.+.|+.++..+ + |.+.+..|...+.= .+..+...--.+++||||=.
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~-d---a~a~v~~I~~~~~~----------~~~~~~~~~pwii~GDFNr~ 189 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN-D---APALVEEVYNFFRD----------SRDPVHQALNWMILGDFNRE 189 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC-S---HHHHHHHHHHHHHT----------CSSHHHHTCEEEEEEECSSC
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc-c---HHHHHHHHHHHHhc----------CcccccCCCcEEEEecCCCC
Confidence 677788887 2 388999999998422 2 66777777654310 11101111358999999964
No 49
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=44.62 E-value=19 Score=36.29 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=26.5
Q ss_pred EEEEEeecCCCCCCC----CCCcccccCCCCCCcEEEEeeEeeE
Q 008034 93 VFVATWNVAGRSPPS----NLSLDDWLHASPPADIYVLGFQEIV 132 (580)
Q Consensus 93 i~VGTWNVgGk~P~~----dldLddWL~~~~~~DIyvvGfQEiV 132 (580)
+-|+|||.-|-.++. ..+|..-+....+|||+ ++||.=
T Consensus 16 ~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIv--aLQEag 57 (262)
T 2f1n_A 16 FRVATWNLQGASATTESKWNINVRQLISGENAVDIL--AVQEAG 57 (262)
T ss_dssp CCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEE--EEEEEC
T ss_pred eEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEE--EEeecC
Confidence 347899999976532 35777755555679975 579983
No 50
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=34.63 E-value=8.1 Score=42.04 Aligned_cols=17 Identities=47% Similarity=0.802 Sum_probs=14.4
Q ss_pred ccccceEEEecccccee
Q 008034 417 ILQHDRVIWLGDLNYRI 433 (580)
Q Consensus 417 I~dhD~vfw~GDLNYRI 433 (580)
+.+++.||+=||||||=
T Consensus 374 L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HTTCSEEEEEHHHHHHH
T ss_pred HhhCcEEEEecchhhhh
Confidence 45689999999999973
No 51
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=22.38 E-value=24 Score=33.71 Aligned_cols=13 Identities=38% Similarity=0.406 Sum_probs=10.8
Q ss_pred cCcCCCcCceeEE
Q 008034 528 SRFSDHRPVYGIF 540 (580)
Q Consensus 528 ~~~SDHrPV~A~F 540 (580)
...|||.||.+.|
T Consensus 247 ~~~SDH~PV~~~l 259 (260)
T 2a40_B 247 LAISDHYPVEVTL 259 (260)
T ss_dssp HHHCSBCCEEEEB
T ss_pred hhcCCCCeEEEEe
Confidence 3579999999876
Done!