Query 008035
Match_columns 580
No_of_seqs 294 out of 615
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:34:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gcl_A Hypothetical 63.0 kDa p 100.0 8.5E-81 2.9E-85 629.4 24.7 257 186-442 2-259 (261)
2 3f5r_A FACT complex subunit PO 100.0 1.7E-52 5.9E-57 402.2 10.4 160 1-163 21-188 (191)
3 3fss_A Histone chaperone RTT10 100.0 1.1E-30 3.6E-35 257.0 22.4 210 206-434 6-237 (237)
4 2yuk_A Myeloid/lymphoid or mix 98.6 9.7E-10 3.3E-14 94.4 -4.1 29 549-577 14-42 (90)
5 1wgf_A Upstream binding factor 98.6 1.2E-08 4.2E-13 86.9 1.5 33 545-577 8-40 (90)
6 2lhj_A High mobility group pro 98.5 3.4E-08 1.2E-12 85.3 2.5 31 547-577 12-42 (97)
7 2co9_A Thymus high mobility gr 98.5 2.9E-08 9.8E-13 86.6 1.2 31 547-577 7-37 (102)
8 1cg7_A Protein (NON histone pr 98.4 7.1E-08 2.4E-12 82.7 1.9 31 547-577 10-40 (93)
9 2eqz_A High mobility group pro 98.3 6.8E-08 2.3E-12 81.5 0.5 29 549-577 7-35 (86)
10 1k99_A Upstream binding factor 98.3 6.6E-08 2.3E-12 84.0 0.4 29 549-577 2-30 (99)
11 2e6o_A HMG box-containing prot 98.1 4.4E-07 1.5E-11 76.7 1.2 28 550-577 10-37 (87)
12 1v64_A Nucleolar transcription 98.1 4.3E-07 1.5E-11 80.2 1.1 29 549-577 8-37 (108)
13 1aab_A High mobility group pro 98.1 3.7E-07 1.3E-11 76.3 0.6 26 552-577 2-27 (83)
14 1hme_A High mobility group pro 98.1 4.6E-07 1.6E-11 74.5 0.1 26 552-577 1-26 (77)
15 2gzk_A Sex-determining region 98.0 1.2E-06 4.2E-11 81.5 0.5 29 549-577 80-108 (159)
16 2cto_A Novel protein; high mob 97.8 2.9E-06 1E-10 73.1 0.9 26 552-577 5-30 (93)
17 2d7l_A WD repeat and HMG-box D 97.8 2.3E-06 7.8E-11 71.8 -0.0 24 554-577 2-25 (81)
18 3tq6_A Transcription factor A, 97.8 1.6E-06 5.3E-11 85.2 -2.0 30 549-578 106-135 (214)
19 1hry_A Human SRY; DNA, DNA-bin 97.7 3.5E-06 1.2E-10 69.0 -0.3 24 554-577 1-24 (76)
20 3tmm_A Transcription factor A, 97.7 2.2E-06 7.6E-11 85.4 -2.0 30 549-578 138-167 (238)
21 2yrq_A High mobility group pro 97.7 6E-06 2.1E-10 78.0 0.5 29 549-577 93-121 (173)
22 1wxl_A Single-strand recogniti 97.7 5.3E-06 1.8E-10 67.6 -0.1 23 555-577 1-23 (73)
23 3nm9_A HMG-D, high mobility gr 97.6 8.9E-06 3E-10 66.3 -0.1 23 555-577 1-23 (73)
24 4euw_A Transcription factor SO 97.5 1.5E-05 5.2E-10 69.8 -0.3 27 551-577 23-49 (106)
25 1wz6_A HMG-box transcription f 97.5 1.8E-05 6.2E-10 65.8 0.1 25 553-577 3-27 (82)
26 3fgh_A Transcription factor A, 97.4 2.6E-05 9E-10 62.3 0.0 22 556-577 1-22 (67)
27 1i11_A Transcription factor SO 97.0 0.0001 3.4E-09 61.1 -0.3 23 555-577 2-24 (81)
28 1ckt_A High mobility group 1 p 96.9 0.00011 3.7E-09 59.1 -0.4 21 557-577 1-21 (71)
29 3f27_D Transcription factor SO 96.9 0.00011 3.7E-09 61.0 -0.6 24 554-577 3-26 (83)
30 3tmm_A Transcription factor A, 96.6 0.00015 5.1E-09 72.2 -2.5 26 552-577 36-61 (238)
31 4a3n_A Transcription factor SO 96.4 0.00034 1.2E-08 56.0 -0.9 21 557-577 2-22 (71)
32 3f5r_A FACT complex subunit PO 95.9 0.027 9.3E-07 54.3 9.3 78 358-441 36-125 (191)
33 2gcl_A Hypothetical 63.0 kDa p 93.2 0.17 6E-06 51.0 7.6 77 19-99 174-257 (261)
34 3fss_A Histone chaperone RTT10 91.2 0.32 1.1E-05 48.2 6.5 72 18-91 164-236 (237)
35 1y5o_A TFB1, RNA polymerase II 84.5 5.7 0.00019 35.2 9.4 73 18-92 11-107 (115)
36 1pfj_A TFIIH basal transcripti 74.9 6.7 0.00023 34.4 6.6 75 18-92 19-99 (108)
37 1ib8_A Conserved protein SP14. 59.8 59 0.002 30.1 10.3 90 47-141 27-158 (164)
38 3hsa_A Pleckstrin homology dom 53.3 65 0.0022 28.9 8.9 79 351-432 34-121 (126)
39 1zyi_A Methylosome subunit pic 52.0 66 0.0023 30.2 9.2 93 100-202 32-143 (171)
40 1y5o_A TFB1, RNA polymerase II 49.7 69 0.0024 28.3 8.3 75 352-433 6-106 (115)
41 1pfj_A TFIIH basal transcripti 44.7 56 0.0019 28.6 6.9 76 353-433 15-98 (108)
42 1yyc_A LEA protein, putative l 43.7 1.9E+02 0.0063 27.1 10.9 91 81-173 27-120 (174)
43 3b77_A Uncharacterized protein 34.0 3.2E+02 0.011 26.1 10.9 91 335-432 6-119 (193)
44 3k9o_B Ubiquitin, UBB+1; E2-25 31.2 76 0.0026 25.6 5.4 48 59-106 1-48 (96)
45 2ca6_A RAN GTPase-activating p 29.0 15 0.00053 37.1 0.9 41 66-110 5-45 (386)
46 4dwf_A HLA-B-associated transc 25.8 80 0.0027 25.2 4.6 48 59-106 5-52 (90)
47 2cay_A VPS36 PH domain, vacuol 25.7 67 0.0023 29.2 4.5 39 356-394 49-92 (145)
48 4eew_A Large proline-rich prot 25.2 82 0.0028 25.0 4.6 53 55-107 13-65 (88)
49 4hcn_B Polyubiquitin, ubiquiti 23.9 1.2E+02 0.004 24.9 5.4 49 58-106 21-69 (98)
50 2ehp_A AQ_1627 protein; putati 22.9 1.2E+02 0.0041 26.5 5.2 44 55-98 71-116 (126)
51 4fbj_B NEDD8; effector-HOST ta 22.2 1.3E+02 0.0045 24.1 5.3 46 61-106 2-47 (88)
52 3u12_A USP37 protein; structur 22.1 2.6E+02 0.009 25.4 7.5 56 374-434 62-118 (141)
53 3v6c_B Ubiquitin; structural g 21.1 1.2E+02 0.0041 24.3 4.8 49 58-106 16-64 (91)
54 2zd7_A VPS75, vacuolar protein 20.9 25 0.00084 35.2 0.6 11 400-410 101-111 (264)
55 3n3k_B Ubiquitin; hydrolase, p 20.8 1.3E+02 0.0044 23.4 4.9 47 60-106 4-50 (85)
56 3u12_A USP37 protein; structur 20.4 1.8E+02 0.0062 26.5 6.1 54 41-94 65-120 (141)
57 3phx_B Ubiquitin-like protein 20.4 1.4E+02 0.0047 23.1 4.9 48 59-106 4-51 (79)
58 3a9j_A Ubiquitin; protein comp 20.0 1.7E+02 0.0058 21.9 5.3 46 61-106 2-47 (76)
No 1
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=100.00 E-value=8.5e-81 Score=629.40 Aligned_cols=257 Identities=34% Similarity=0.650 Sum_probs=227.6
Q ss_pred ChHHHHHHHHHhhccccccCCceeEEecCceeeCCCcceEEEEecccEEEecccceeEeecCceeEEEecccCCCCcEEE
Q 008035 186 PPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFV 265 (580)
Q Consensus 186 ~~a~~f~~~i~~kA~i~~~~gd~i~~f~dI~~~tPRGRydie~~~~~lrl~gkt~dykI~y~~I~rlFlLP~pd~~~~~~ 265 (580)
++|++|+++||++|+|++++|++||+|+||+|+||||||+|+||.++|||||+||||+|+|++|+|+|+||+||+.|++|
T Consensus 2 ~~~~~~~~~i~~ka~i~~~~gd~i~~~~dv~~ltPRGrydi~~~~~~lrl~gkt~dyki~~~~I~r~f~LP~pd~~~~~~ 81 (261)
T 2gcl_A 2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMM 81 (261)
T ss_dssp ------------------CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEE
T ss_pred cHHHHHHHHHHhhccccccCCceEEEEcCceEEcCCCceEEEEecCcEEEeCCcccceechhhEEEEEEccCCCcCceEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccCCCccCceEEEEEeccceeeecccCCHHHHhhHhhhccccccccchHHHHHHHHhhhcCCeeeccCCcccC
Q 008035 266 VVTLDPPIRKGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITKPGKFRSA 345 (580)
Q Consensus 266 vi~Ld~PIrqGqTry~~lV~qF~~ee~~~~elnl~eeeleeky~~~L~~~~~g~~~ev~~~v~k~l~~~ki~~P~~F~s~ 345 (580)
||+|+||+|||||+|+||||||++++++++++|+++++++++|+++|.++|+|++|++|+++|++|+|+||+.|+.|.|+
T Consensus 82 vi~ld~PirqGqt~y~~lV~qf~~~e~~~~~ln~~~~~~~~ky~~~L~~~~~g~~~~vv~~ilk~l~g~kv~~P~~F~S~ 161 (261)
T 2gcl_A 82 VMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSK 161 (261)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCT
T ss_pred EEecCCCccCCCccCCeEEEEEeCCCceEeeecCCHHHHhhhhccccccccCCcHHHHHHHHHHHhcCCeeecCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEeeccCceeEEEeccCceeeccCCcEEEEcCceeEEEEEEecCCCcceeeEEEEEEEeCC-ceEEEeecChhhh
Q 008035 346 QDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTE-QEHLFRNIQRNEY 424 (580)
Q Consensus 346 ~g~~~VkCs~KA~~G~LyPLe~~flfl~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~V~~K~g-~~~~Fs~I~reE~ 424 (580)
.|++||+|++||++|+||||++||||+||||+||+|+||++|+|+|+|++++++|||||+|++|+| ++|+|+||+|+||
T Consensus 162 ~~~~~Vkcs~ka~eG~LypL~~gflF~~KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~ 241 (261)
T 2gcl_A 162 YDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ 241 (261)
T ss_dssp TSCSCEEEEETTEEEEEEECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGH
T ss_pred CCCceEEEeccCCceEEEEecCceEEeeCCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHH
Confidence 999999999999999999999999999999999999999999999997765556999999999998 9999999999999
Q ss_pred hhHHHHHhcCCceEeeCC
Q 008035 425 HNLFDFISGKGLKIMNLG 442 (580)
Q Consensus 425 ~~L~~fl~~k~lki~n~~ 442 (580)
++|++||++|+|+|+|++
T Consensus 242 ~~L~~ylk~k~l~ikn~~ 259 (261)
T 2gcl_A 242 QLLEQFLKSKNLRVKNED 259 (261)
T ss_dssp HHHHHHHHHTTCCEEC--
T ss_pred HHHHHHHHHcCCeeecCC
Confidence 999999999999999974
No 2
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-52 Score=402.17 Aligned_cols=160 Identities=29% Similarity=0.519 Sum_probs=101.4
Q ss_pred CCCCCcccceEecCCCCCCCeeEEEecCceeEEeC-CCC-------ceEEeecCCcceeEEEEecCcceEEEEEeCCcEE
Q 008035 1 MTDGPSFNNISLGGRGGTNPGQLKIYSGKISWKKL-GGG-------KAVEVDKVDIAGVTWMKVPRTNQLGVRTKDGLYY 72 (580)
Q Consensus 1 M~~~~~f~~I~~~~~g~~~~G~lk~~~~gl~wK~~-~~g-------~~~~i~~~di~~~~w~r~~~~~~Lri~~k~~~~~ 72 (580)
|+ .++|+|||+++ +..+|+|||+++||+||++ +|| ++++|+++||.+|+|+|++|+|+|||.+|+|.+|
T Consensus 21 m~-~~~F~nI~l~~--s~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~rg~~LrI~~K~g~~~ 97 (191)
T 3f5r_A 21 GM-STDFDRIYLNQ--SKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 97 (191)
T ss_dssp CS-SEEEEEEEETT--CSSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECSSSEEEEEEESSSCEE
T ss_pred ee-eeeECcEeecC--CCcccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEccCCcEEEEEECCCceE
Confidence 54 58999999998 8899999999999999999 999 9999999999999999999999999999999999
Q ss_pred EEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCceEEEEeCCEEEEEEecccccccccccCCeEEEEEe
Q 008035 73 KFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGKNDVILEFH 152 (580)
Q Consensus 73 ~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~GwNwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~KnEv~lef~ 152 (580)
+||||+++|+++|++||+++|+|+|+++|||++|||||+++|+|++|+|.|++||||||||++|||||+++||||+||||
T Consensus 98 ~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kGwNWG~~~f~g~~L~F~v~~KpaFEIPls~VSn~nl~gKNEValEFh 177 (191)
T 3f5r_A 98 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIPYARINNTNLTSKNEVGIEFN 177 (191)
T ss_dssp EEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTTC---------------------------------------------
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCceeeeeecccccceecEEcCCEEEEEeCCeeEEEecHHHhhhcccCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q 008035 153 VDDTTGANEKD 163 (580)
Q Consensus 153 ~~d~~~~~~~d 163 (580)
++++.....+|
T Consensus 178 ~~~~~~~~~~d 188 (191)
T 3f5r_A 178 IQDEEYQPAGD 188 (191)
T ss_dssp -----------
T ss_pred cCCccccCCCC
Confidence 98765333344
No 3
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=99.97 E-value=1.1e-30 Score=256.99 Aligned_cols=210 Identities=19% Similarity=0.326 Sum_probs=152.5
Q ss_pred CceeEEecCceeeCC-CcceEEEEecc---c--EEEecccc--eeEee--cCceeEEEecccCCCCc-EEEEEecCCccc
Q 008035 206 EEAVVTFEGIAILTP-RGRYSVELHLS---F--LRLQGQAN--DFKIQ--YSSVVRLFLLPKSNQPH-TFVVVTLDPPIR 274 (580)
Q Consensus 206 gd~i~~f~dI~~~tP-RGRydie~~~~---~--lrl~gkt~--dykI~--y~~I~rlFlLP~pd~~~-~~~vi~Ld~PIr 274 (580)
.+.|..+.+|+|++| |.|.+|.+|-+ . +.-..+++ ++.|. +++|+-++|||.|+... .+++|.. ++..
T Consensus 6 ~~iIfei~~vS~~sP~RKKlnl~~hl~~~~~~P~lsi~~~~~~E~si~~l~~~i~~~~~LPvpeK~~~~~l~i~~-~~~~ 84 (237)
T 3fss_A 6 TNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFMTY-TSCE 84 (237)
T ss_dssp CEEEEEEEEEEEEESSCEEEEEEEEECTTTCCEEEEEEETTEEEEEECCHHHHEEEEEEEECTTCTTEEEEEEEE-SCCG
T ss_pred ceEEEEecceeEeccccceEEEEEEECCCCCceEEEEecCCCceEEhhhhhcceeEEEEecCCccCCceEEEEEe-cCCC
Confidence 567999999999999 99999999953 1 22222333 66775 89999999999998655 3444433 3322
Q ss_pred CCCccCceEEEEEeccceeeecccCCHHHHhhHhhhccccccccchHHHHHHHHh---hhcCCeeeccCCcccC------
Q 008035 275 KGQTLYPHIVLQFETDYVVQSELLMSEELLNTKYKDKLEPSYKGLIHEVFTTILR---GLSGAKITKPGKFRSA------ 345 (580)
Q Consensus 275 qGqTry~~lV~qF~~ee~~~~elnl~eeeleeky~~~L~~~~~g~~~ev~~~v~k---~l~~~ki~~P~~F~s~------ 345 (580)
+.+.-..||+|++.+... ..+. -.+.+...-. -|+.+..-|+ .|||.++.-|..+.+.
T Consensus 85 -~~~~~dPiv~t~n~~~~~--------kq~~--~~g~~~~~~~--~f~~~i~~~~rQ~~l~G~~i~~pf~~~~~~~~~~~ 151 (237)
T 3fss_A 85 -DNKFSEPVVMTLNKENTL--------NQFK--KLGLLDSNVT--DFEKCVEYIRKQAILTGFKISNPFVNSTLVDTDAE 151 (237)
T ss_dssp -GGCCCSCEEEEEEHHHHH--------HHHH--HTTSSCTTCC--CTHHHHHHHHHHHHHTTCCCBCTTC----------
T ss_pred -CCCCCCCEEEEEchHHhh--------hhhh--hcCCCcccch--hHHHHHHHHHHHHhhcCeeccCcccccccccCCCC
Confidence 233345699999866311 0110 0122322222 1233222222 4789888777654431
Q ss_pred -CCCceeEeeccCceeEEEeccCceeec-cCCcEEEEcCceeEEEEEEecCCCcceeeEEEEEEEeCCceEEEeecChhh
Q 008035 346 -QDGYAVKSSLKAEDGVLYPLEKSFFFL-PKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNE 423 (580)
Q Consensus 346 -~g~~~VkCs~KA~~G~LyPLe~~flfl-~KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~V~~K~g~~~~Fs~I~reE 423 (580)
...+||+|++||++|+||||++||||+ +||++||++++|++|+|+|++ +|||||+|++|+|.+|+|+||||+|
T Consensus 152 ~~~~~~Vkc~~kAkeG~LyfL~~~ilFgf~KP~l~i~~~dI~svs~Srv~-----~RTFdl~v~~k~g~e~eFsmIDq~E 226 (237)
T 3fss_A 152 KINSFHLQCHRGTKEGTLYFLPDHIIFGFKKPILLLDASDIESITYSSIT-----RLTFNASLVTKDGEKYEFSMIDQTE 226 (237)
T ss_dssp CCCCEEEEEESSSSEEEEEECSSEEEEESSSSCEEEEGGGEEEEEEESCC-----SSEEEEEEEETTSCEEEEEEEEGGG
T ss_pred CCCceEEEEEcCCCCeEEEEecCceEEecCCCeEEEEehhEEEEEEEecc-----CcEEEEEEEECCCCeEEEeecCHHH
Confidence 236899999999999999999999995 999999999999999999984 3999999999999999999999999
Q ss_pred hhhHHHHHhcC
Q 008035 424 YHNLFDFISGK 434 (580)
Q Consensus 424 ~~~L~~fl~~k 434 (580)
|++|++|+++|
T Consensus 227 ~~~Id~fvk~K 237 (237)
T 3fss_A 227 YAKIDDYVKRK 237 (237)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcC
Confidence 99999999976
No 4
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.61 E-value=9.7e-10 Score=94.41 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=26.4
Q ss_pred ccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 549 QKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 549 ~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
.|++|||||||||+|||||||+++|++|+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik 42 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLK 42 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHH
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHH
Confidence 45567999999999999999999999986
No 5
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.56 E-value=1.2e-08 Score=86.95 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=28.2
Q ss_pred ccccccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 545 KKKKQKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 545 ~~~~~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+++++|+++|||+||||++||||||+++|++|+
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k 40 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQ 40 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHH
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344456678999999999999999999998875
No 6
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=98.50 E-value=3.4e-08 Score=85.26 Aligned_cols=31 Identities=48% Similarity=0.780 Sum_probs=27.3
Q ss_pred ccccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 547 KKQKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 547 ~~~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+++++++||++||||++||||||+++|++|+
T Consensus 12 ~~~k~~kdp~~pKrP~say~lF~~~~r~~~k 42 (97)
T 2lhj_A 12 RPRKAKKDPNAPKRALSSYMFFAKEKRVEII 42 (97)
T ss_dssp CTTCTTSCCCCCCCCCCSSTHHHHGGGGGHH
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999875
No 7
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.46 E-value=2.9e-08 Score=86.61 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=27.1
Q ss_pred ccccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 547 KKQKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 547 ~~~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+++|+++|||+||||++||||||+++|++|+
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~ 37 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIK 37 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456678999999999999999999998875
No 8
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=98.40 E-value=7.1e-08 Score=82.65 Aligned_cols=31 Identities=48% Similarity=0.927 Sum_probs=27.3
Q ss_pred ccccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 547 KKQKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 547 ~~~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+++|+++||++||||+|||||||+++|++|+
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~ 40 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVR 40 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTT
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999876
No 9
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=6.8e-08 Score=81.49 Aligned_cols=29 Identities=41% Similarity=0.574 Sum_probs=25.9
Q ss_pred ccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 549 QKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 549 ~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+++++||++||||+|||||||+++|++|+
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k 35 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHK 35 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 45568999999999999999999998875
No 10
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.34 E-value=6.6e-08 Score=83.97 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=26.2
Q ss_pred ccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 549 QKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 549 ~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+|+++||++||||+|||||||+++|++|+
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik 30 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYA 30 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999875
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.14 E-value=4.4e-07 Score=76.73 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=25.4
Q ss_pred cCCCCCCCCCCCCchhhhcccccccccc
Q 008035 550 KKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 550 kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
++++||++||||++||||||+++|++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~ 37 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYT 37 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999998775
No 12
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.14 E-value=4.3e-07 Score=80.18 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=26.3
Q ss_pred ccCCCCCCCC-CCCCchhhhcccccccccc
Q 008035 549 QKKKKDPNAP-KRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 549 ~kk~kdp~aP-Kr~~sa~~~f~~~~r~~~~ 577 (580)
.+|.||||+| |||+|||||||+++|++|+
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k 37 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK 37 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 4556899999 9999999999999999886
No 13
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=98.14 E-value=3.7e-07 Score=76.25 Aligned_cols=26 Identities=42% Similarity=0.709 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCchhhhcccccccccc
Q 008035 552 KKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 552 ~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
++|||+||||+|||||||+++|++|+
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~ 27 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHK 27 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999875
No 14
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.08 E-value=4.6e-07 Score=74.50 Aligned_cols=26 Identities=46% Similarity=0.580 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCchhhhcccccccccc
Q 008035 552 KKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 552 ~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+||||+||||+|||||||+++|++|+
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~ 26 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIK 26 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999998764
No 15
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.96 E-value=1.2e-06 Score=81.51 Aligned_cols=29 Identities=48% Similarity=0.611 Sum_probs=25.8
Q ss_pred ccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 549 QKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 549 ~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+|+.+||++||||+|||||||+++|++|+
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~ 108 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIK 108 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHhhHHHHH
Confidence 44568999999999999999999998875
No 16
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=2.9e-06 Score=73.14 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCchhhhcccccccccc
Q 008035 552 KKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 552 ~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
.+++|+||||+|||||||+++|++|+
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik 30 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELR 30 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999875
No 17
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=2.3e-06 Score=71.84 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=22.6
Q ss_pred CCCCCCCCCchhhhcccccccccc
Q 008035 554 DPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 554 dp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+||+||||+|||||||+++|++|+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik 25 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNIL 25 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 18
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=97.79 E-value=1.6e-06 Score=85.24 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=26.4
Q ss_pred ccCCCCCCCCCCCCchhhhccccccccccc
Q 008035 549 QKKKKDPNAPKRAMSGFIFFSQMEREVGSF 578 (580)
Q Consensus 549 ~kk~kdp~aPKr~~sa~~~f~~~~r~~~~~ 578 (580)
+|+.||||+||||+||||+||+++|++|+-
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~ 135 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKG 135 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSC
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhcc
Confidence 344689999999999999999999999864
No 19
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.74 E-value=3.5e-06 Score=68.96 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.8
Q ss_pred CCCCCCCCCchhhhcccccccccc
Q 008035 554 DPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 554 dp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
|||+||||++||||||+++|++|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~ 24 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMA 24 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999998875
No 20
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=97.73 E-value=2.2e-06 Score=85.45 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=26.5
Q ss_pred ccCCCCCCCCCCCCchhhhccccccccccc
Q 008035 549 QKKKKDPNAPKRAMSGFIFFSQMEREVGSF 578 (580)
Q Consensus 549 ~kk~kdp~aPKr~~sa~~~f~~~~r~~~~~ 578 (580)
+|+.||||+||||+|||||||+++|++|+-
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~ 167 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKG 167 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCC
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhc
Confidence 344689999999999999999999999874
No 21
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=6e-06 Score=78.02 Aligned_cols=29 Identities=48% Similarity=0.611 Sum_probs=25.6
Q ss_pred ccCCCCCCCCCCCCchhhhcccccccccc
Q 008035 549 QKKKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 549 ~kk~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+++.+||++||||+|||||||+++|++|+
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~ 121 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIK 121 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHH
Confidence 45568999999999999999999998774
No 22
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.68 E-value=5.3e-06 Score=67.59 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.6
Q ss_pred CCCCCCCCchhhhcccccccccc
Q 008035 555 PNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 555 p~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
||+||||+||||+||+++|++|+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~ 23 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIK 23 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998875
No 23
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.59 E-value=8.9e-06 Score=66.27 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.1
Q ss_pred CCCCCCCCchhhhcccccccccc
Q 008035 555 PNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 555 p~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
.|+||||+|||||||+++|++|+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~ 23 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIK 23 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999875
No 24
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.47 E-value=1.5e-05 Score=69.85 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCchhhhcccccccccc
Q 008035 551 KKKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 551 k~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
..|||++||||++||||||+++|++|+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k 49 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLA 49 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999998875
No 25
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.46 E-value=1.8e-05 Score=65.78 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=23.1
Q ss_pred CCCCCCCCCCchhhhcccccccccc
Q 008035 553 KDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 553 kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
.||++||||++||||||+++|++|+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~ 27 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVR 27 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998775
No 26
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=97.37 E-value=2.6e-05 Score=62.33 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.6
Q ss_pred CCCCCCCchhhhcccccccccc
Q 008035 556 NAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 556 ~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
|+||||+||||+||+++|++++
T Consensus 1 g~PKrP~say~~F~~~~r~~~k 22 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAK 22 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999876
No 27
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=96.98 E-value=0.0001 Score=61.10 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred CCCCCCCCchhhhcccccccccc
Q 008035 555 PNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 555 p~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+++||||++||||||+++|++|+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~ 24 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKIL 24 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999998875
No 28
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=96.94 E-value=0.00011 Score=59.14 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.3
Q ss_pred CCCCCCchhhhcccccccccc
Q 008035 557 APKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 557 aPKr~~sa~~~f~~~~r~~~~ 577 (580)
+||||+||||+||+++|++++
T Consensus 1 kPKrP~say~~F~~~~r~~~~ 21 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHK 21 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHH
Confidence 699999999999999998774
No 29
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=96.92 E-value=0.00011 Score=60.98 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=18.8
Q ss_pred CCCCCCCCCchhhhcccccccccc
Q 008035 554 DPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 554 dp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
.++.||||++||||||+++|++|+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~ 26 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLA 26 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 577899999999999999998875
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.61 E-value=0.00015 Score=72.23 Aligned_cols=26 Identities=19% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCchhhhcccccccccc
Q 008035 552 KKDPNAPKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 552 ~kdp~aPKr~~sa~~~f~~~~r~~~~ 577 (580)
.+||++||||+|||||||+++|++|+
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k 61 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFK 61 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999875
No 31
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=96.44 E-value=0.00034 Score=56.01 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=16.9
Q ss_pred CCCCCCchhhhcccccccccc
Q 008035 557 APKRAMSGFIFFSQMEREVGS 577 (580)
Q Consensus 557 aPKr~~sa~~~f~~~~r~~~~ 577 (580)
.||||++||||||+++|++|+
T Consensus 2 k~krP~~af~lf~~~~r~~~~ 22 (71)
T 4a3n_A 2 SIRRPMNAFMVWAKDERKRLA 22 (71)
T ss_dssp ---CCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999998875
No 32
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.027 Score=54.27 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=67.6
Q ss_pred ceeEEEeccCceeeccC-----------CcEEEEcCceeEEEEEEecCCCcceeeEEEEEEEeCCceEEEeecChhhhhh
Q 008035 358 EDGVLYPLEKSFFFLPK-----------PPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHN 426 (580)
Q Consensus 358 ~~G~LyPLe~~flfl~K-----------Pp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~V~~K~g~~~~Fs~I~reE~~~ 426 (580)
..|.|=.-+.+|.|=.. -++.|+-+||..+...|++ |.|-|.|.+|+|..++|.....++++.
T Consensus 36 ~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~------rg~~LrI~~K~g~~~~fdGF~~~D~~~ 109 (191)
T 3f5r_A 36 FSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGC------RGYDLKINTKNQGVIQLDGFSQDDYNL 109 (191)
T ss_dssp SCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECS------SSEEEEEEESSSCEEEEEEECGGGHHH
T ss_pred cccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEcc------CCcEEEEEECCCceEEecCCCHHHHHH
Confidence 46777777778888533 6789999999999999963 889999999999999999999999999
Q ss_pred HHHHHhcC-CceEeeC
Q 008035 427 LFDFISGK-GLKIMNL 441 (580)
Q Consensus 427 L~~fl~~k-~lki~n~ 441 (580)
|.+|++.. +|.+...
T Consensus 110 L~~~fk~~f~i~Le~k 125 (191)
T 3f5r_A 110 IKNDFHRRFNIQVEQR 125 (191)
T ss_dssp HHHHHHHHHCCCCEEC
T ss_pred HHHHHHHHcCCCceee
Confidence 99999988 7777664
No 33
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=93.18 E-value=0.17 Score=50.97 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCeeEEEecCceeEEeCCCCceEEeecCCcceeEEEEe------cCcceEEEEEeCC-cEEEEcCCChhhHHHHHHHHHh
Q 008035 19 NPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKV------PRTNQLGVRTKDG-LYYKFTGFRDQDVATLTNFFQS 91 (580)
Q Consensus 19 ~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~------~~~~~Lri~~k~~-~~~~fdGF~~~d~~~l~~~~~~ 91 (580)
..|-|=.=+.||-|=. + -++.|+-+||.+++.+|+ .|.+.|.|.+++| ..|.|.+..++|+..|.+|+++
T Consensus 174 ~eG~LypL~~gflF~~-K--P~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~~~L~~ylk~ 250 (261)
T 2gcl_A 174 NEGYLYPLDNAFFFLT-K--PTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKS 250 (261)
T ss_dssp EEEEEEECSSEEEEES-S--SCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred CceEEEEecCceEEee-C--CcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHHHHHHHHHHH
Confidence 5688888899999953 2 579999999999999996 3889999999999 9999999999999999999998
Q ss_pred hcCCCCce
Q 008035 92 NFGISPEE 99 (580)
Q Consensus 92 ~~~~~l~~ 99 (580)
+ ++.+.+
T Consensus 251 k-~l~ikn 257 (261)
T 2gcl_A 251 K-NLRVKN 257 (261)
T ss_dssp T-TCCEEC
T ss_pred c-CCeeec
Confidence 7 655543
No 34
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=91.22 E-value=0.32 Score=48.18 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=64.0
Q ss_pred CCCeeEEEecCceeEEeCCCCceEEeecCCcceeEEEEec-CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHh
Q 008035 18 TNPGQLKIYSGKISWKKLGGGKAVEVDKVDIAGVTWMKVP-RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQS 91 (580)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~~~g~~~~i~~~di~~~~w~r~~-~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~ 91 (580)
...|.|=+-+.+|-|==.+ -+.-++-+||.++..+|++ |.+.|.|.+++|.-+.|.-..+++++.|.+|+++
T Consensus 164 AkeG~LyfL~~~ilFgf~K--P~l~i~~~dI~svs~Srv~~RTFdl~v~~k~g~e~eFsmIDq~E~~~Id~fvk~ 236 (237)
T 3fss_A 164 TKEGTLYFLPDHIIFGFKK--PILLLDASDIESITYSSITRLTFNASLVTKDGEKYEFSMIDQTEYAKIDDYVKR 236 (237)
T ss_dssp SSEEEEEECSSEEEEESSS--SCEEEEGGGEEEEEEESCCSSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHHC
T ss_pred CCCeEEEEecCceEEecCC--CeEEEEehhEEEEEEEeccCcEEEEEEEECCCCeEEEeecCHHHHHHHHHHHhc
Confidence 3679999999999993111 4789999999999999986 8999999999999999999999999999999985
No 35
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=84.53 E-value=5.7 Score=35.23 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=62.5
Q ss_pred CCCeeEEEecC----ceeEEeCCCCceEEeecCCcceeEEEEec-CcceEEEEEeC--------C-----------cEEE
Q 008035 18 TNPGQLKIYSG----KISWKKLGGGKAVEVDKVDIAGVTWMKVP-RTNQLGVRTKD--------G-----------LYYK 73 (580)
Q Consensus 18 ~~~G~lk~~~~----gl~wK~~~~g~~~~i~~~di~~~~w~r~~-~~~~Lri~~k~--------~-----------~~~~ 73 (580)
+..|.|.|+++ .|.|++..++.+++|+-+.|...|=.... ...-|||..+. + .++.
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It~LQqTp~ts~KvmLKI~~k~~~~~~~~~~~~~~~~~~p~~~~F~ 90 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFS 90 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECCTTCSSEEEEEEECSCCSSSCCCCSSCCSSCCCEEEEEE
T ss_pred ecccEEEEccCCCcceEEEEECCCCccEEEEhhhhhhhhcCCCCCCceEEEEEEeccccccccCCCcCCCCCCcceEEEE
Confidence 45799999998 89999976799999999999998877775 89999999883 3 5788
Q ss_pred EcCCChhhHHHHHHHHHhh
Q 008035 74 FTGFRDQDVATLTNFFQSN 92 (580)
Q Consensus 74 fdGF~~~d~~~l~~~~~~~ 92 (580)
|.. +.+.+.|+..|+..
T Consensus 91 Ftn--R~~~d~IKd~Lq~i 107 (115)
T 1y5o_A 91 FNN--RTVMDNIKMTLQQI 107 (115)
T ss_dssp ESC--HHHHHHHHHHHHHH
T ss_pred eCC--HHHHHHHHHHHHHH
Confidence 888 89999999998764
No 36
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=74.94 E-value=6.7 Score=34.44 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=56.5
Q ss_pred CCCeeEEEecCceeEEeCCCC-ceEEeecCCcceeEEEEec-CcceEEEEEeCCcEEEE--cC--CChhhHHHHHHHHHh
Q 008035 18 TNPGQLKIYSGKISWKKLGGG-KAVEVDKVDIAGVTWMKVP-RTNQLGVRTKDGLYYKF--TG--FRDQDVATLTNFFQS 91 (580)
Q Consensus 18 ~~~G~lk~~~~gl~wK~~~~g-~~~~i~~~di~~~~w~r~~-~~~~Lri~~k~~~~~~f--dG--F~~~d~~~l~~~~~~ 91 (580)
+..|.|-|+++-+.|.+..++ -.++++-++|...+-+.-+ -..+|+|.++++.-|.| .. =...|-+.+++.|+.
T Consensus 19 K~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~~F~Ftn~~~a~~erd~VKd~L~~ 98 (108)
T 1pfj_A 19 KQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQ 98 (108)
T ss_dssp SCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEEEEECCCSSCTTHHHHHHHHHHHH
T ss_pred cCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEEeCCCceEEEEcCcHHHHHHHHHHHHHHHH
Confidence 456999999999999995544 4577789999998777765 89999999998865554 33 134567777777665
Q ss_pred h
Q 008035 92 N 92 (580)
Q Consensus 92 ~ 92 (580)
.
T Consensus 99 ~ 99 (108)
T 1pfj_A 99 L 99 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=59.83 E-value=59 Score=30.08 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=65.2
Q ss_pred CcceeEEEEecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcC--CC-----Cceeeeeeeee------------
Q 008035 47 DIAGVTWMKVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFG--IS-----PEEKQLSVSGR------------ 107 (580)
Q Consensus 47 di~~~~w~r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~--~~-----l~~~els~~Gw------------ 107 (580)
++-.+.|.+-++.+.|||++-.. +|..-+|-+.++..+...++ .. -+.=|+|..|.
T Consensus 27 eLvdve~~~~g~~~~LrV~ID~~-----~gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSPGldRpL~~~~df~r 101 (164)
T 1ib8_A 27 ELVDIEYGKIGSDMILSIFVDKP-----EGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGLERPLKTKDAVAG 101 (164)
T ss_dssp EEEEEEEEEETTEEEEEEEEECS-----SCCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECCSSSSCCSSHHHHHH
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCCHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCCCCCCCCCCHHHHHH
Confidence 56778888889999999998543 58999999999999999999 52 23344444442
Q ss_pred ------------------ee-eeeE-ecCceEEEEeCC---EEEEEEeccccccccc
Q 008035 108 ------------------NW-GEVD-LNGNMLTFMVGQ---KQAFEVSLADVSQTQL 141 (580)
Q Consensus 108 ------------------Nw-G~~~-~~~~~l~f~v~~---k~~feip~~~is~~~~ 141 (580)
+| |.+. +++..+++.+.+ .....||+++|+.+++
T Consensus 102 ~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~v~l~~~~k~~~~~~~i~~~~I~ka~l 158 (164)
T 1ib8_A 102 AVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYSLVSKARL 158 (164)
T ss_dssp HCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSSCEEEEEECSSCCSSCEE
T ss_pred hCCcEEEEEEecccCCceEEEEEEEEEeCCEEEEEEecccCCeEEEEEHHHCcEEEE
Confidence 11 3333 666777777754 3467899999988776
No 38
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=53.31 E-value=65 Score=28.87 Aligned_cols=79 Identities=6% Similarity=0.045 Sum_probs=49.9
Q ss_pred eEeeccCceeEEEeccCceeeccCC-------c-EEEEcCceeEEEEEEecCCCcceeeEEEEEEEeCCc-eEEEeecCh
Q 008035 351 VKSSLKAEDGVLYPLEKSFFFLPKP-------P-TLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ-EHLFRNIQR 421 (580)
Q Consensus 351 VkCs~KA~~G~LyPLe~~flfl~KP-------p-~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~V~~K~g~-~~~Fs~I~r 421 (580)
|.+.+|......-++++.||++-|. - .-|||..|..++++-.|. .- ....|.|.+.++. ++.|.=-..
T Consensus 34 I~~ayk~iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~--fD-lDaElki~isg~~~pi~~~f~k~ 110 (126)
T 3hsa_A 34 LQLAYXMVRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGT--FD-MDAELXLWISGQHEPLVXELXRG 110 (126)
T ss_dssp EEEEEECSSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEEST--TS-CEEEEEEEETTCSSCEEEEECTT
T ss_pred EEEEehhcCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEecccc--cc-CCceEEEEEcCCceEEEEeccCc
Confidence 4566778889999999999997543 2 379999999999997541 10 2233555555532 245433333
Q ss_pred hhhhhHHHHHh
Q 008035 422 NEYHNLFDFIS 432 (580)
Q Consensus 422 eE~~~L~~fl~ 432 (580)
.+...|...|.
T Consensus 111 ~di~~i~k~La 121 (126)
T 3hsa_A 111 TDVVGIQXTIA 121 (126)
T ss_dssp SCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 44555555544
No 39
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=51.99 E-value=66 Score=30.23 Aligned_cols=93 Identities=10% Similarity=0.248 Sum_probs=59.0
Q ss_pred eeeeeeeee--eeeeEecCceEEEEeCCEEEEEEecccccccccccC------CeEEEEEecCCC-----------CCCC
Q 008035 100 KQLSVSGRN--WGEVDLNGNMLTFMVGQKQAFEVSLADVSQTQLQGK------NDVILEFHVDDT-----------TGAN 160 (580)
Q Consensus 100 ~els~~GwN--wG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~~K------nEv~lef~~~d~-----------~~~~ 160 (580)
..+.+.+++ =|++.+....|.+.-+....|.|||..|+==.++.- .=|-+++..... ..+.
T Consensus 32 v~~vl~~~~~g~GtLyVt~~~l~W~~~~~~G~sI~YpsIsLHAIsrd~~~~p~~clY~Qld~~~~~~~~~~~~e~~~~Dd 111 (171)
T 1zyi_A 32 TEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPTISLHAVSRDLNAYPREHLYVMVNAKFGEESKESVAEEEDSDD 111 (171)
T ss_dssp EEEEBTTBCCCEEEEEEETTEEEEEETTTEEEEESSCCCSEEECCSSCSSCCSCCEEEEEECCCCSSCSSSCCCSCCSSC
T ss_pred EEEEECCCccCceEEEEEcCEEEEEcCCCcEEEeecCeEEEEEEecCCCCCCCceEEEEEecccCccccccccccccccc
Confidence 344444444 378899999998887778999999999986555222 123344432110 0112
Q ss_pred CCCceEEEEEEecCCCCcCCCCCCCChHHHHHHHHHhhcccc
Q 008035 161 EKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVG 202 (580)
Q Consensus 161 ~~d~L~EmRF~vP~~~~~~~~de~~~~a~~f~~~i~~kA~i~ 202 (580)
..+.++||||. |.. .+.++.+++++-.-|.+.
T Consensus 112 e~~~~~Eirlv-P~d---------~s~l~~if~Ams~Cq~Lh 143 (171)
T 1zyi_A 112 DVEPIAEFRFV-PSD---------KSALEAMFTAMCECQALH 143 (171)
T ss_dssp CSCSEEEEEEE-ESC---------HHHHHHHHHHHHHHHHC-
T ss_pred cccceeEEEEe-CCC---------ccHHHHHHHHHHHHHHcC
Confidence 23669999996 532 356888998888877664
No 40
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=49.68 E-value=69 Score=28.32 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=54.8
Q ss_pred EeeccCceeEEEeccC----ceeecc---CCcEEEEcCceeEEEEEEecCCCcceeeEEEEEEEeC--------C-----
Q 008035 352 KSSLKAEDGVLYPLEK----SFFFLP---KPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKT--------E----- 411 (580)
Q Consensus 352 kCs~KA~~G~LyPLe~----~flfl~---KPp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~V~~K~--------g----- 411 (580)
.|+||-.+|.|.-.++ .|.|.+ -|++-|+++.|....=+.... ---=|.|..|. +
T Consensus 6 aa~yKKk~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It~LQqTp~ts-----~KvmLKI~~k~~~~~~~~~~~~~~~ 80 (115)
T 1y5o_A 6 AAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASS-----EKMMLRLIGKVDESKKRKDNEGNEV 80 (115)
T ss_dssp EEESSSCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECCTTC-----SSEEEEEEECSCCSSSCCCCSSCCS
T ss_pred eeEEEecccEEEEccCCCcceEEEEECCCCccEEEEhhhhhhhhcCCCCC-----CceEEEEEEeccccccccCCCcCCC
Confidence 5999999999999999 888865 245789999999865444321 23445666662 2
Q ss_pred ------ceEEEeecChhhhhhHHHHHhc
Q 008035 412 ------QEHLFRNIQRNEYHNLFDFISG 433 (580)
Q Consensus 412 ------~~~~Fs~I~reE~~~L~~fl~~ 433 (580)
-.++|+| |.|.++|++.|+.
T Consensus 81 ~~~p~~~~F~Ftn--R~~~d~IKd~Lq~ 106 (115)
T 1y5o_A 81 VPKPQRHMFSFNN--RTVMDNIKMTLQQ 106 (115)
T ss_dssp SCCCEEEEEEESC--HHHHHHHHHHHHH
T ss_pred CCCcceEEEEeCC--HHHHHHHHHHHHH
Confidence 1455677 9999999999875
No 41
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=44.74 E-value=56 Score=28.57 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=53.1
Q ss_pred eeccCceeEEEeccCceeecc--C--CcEEEEcCceeEEEEEEecCCCcceeeEEEEEEEeCCc--eEEEeec--Chhhh
Q 008035 353 SSLKAEDGVLYPLEKSFFFLP--K--PPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQ--EHLFRNI--QRNEY 424 (580)
Q Consensus 353 Cs~KA~~G~LyPLe~~flfl~--K--Pp~~I~~~eI~~V~f~Rv~~~~~~~rTFDl~V~~K~g~--~~~Fs~I--~reE~ 424 (580)
..||-.+|.||.....+.|.+ + |++-+++++|...--+=. +. ----|.|.++++. .++|+|= .+.|-
T Consensus 15 v~yKK~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~---~k--~KVqLqi~l~~~~~~~F~Ftn~~~a~~er 89 (108)
T 1pfj_A 15 VRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPE---GK--AKIQLQLVLHAGDTTNFHFSNESTAVKER 89 (108)
T ss_dssp CBCSSCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCS---SS--SSCEEEEECSSSCEEEEECCCSSCTTHHH
T ss_pred heeecCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCC---CC--ccEEEEEEEeCCCceEEEEcCcHHHHHHH
Confidence 578888999999999999975 2 334568999987444332 21 3356788888765 4556663 36788
Q ss_pred hhHHHHHhc
Q 008035 425 HNLFDFISG 433 (580)
Q Consensus 425 ~~L~~fl~~ 433 (580)
+.+++-|..
T Consensus 90 d~VKd~L~~ 98 (108)
T 1pfj_A 90 DAVKDLLQQ 98 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776653
No 42
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=43.72 E-value=1.9e+02 Score=27.08 Aligned_cols=91 Identities=8% Similarity=0.130 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhhcCCCCceeeeeeeeeeeeeeEecCce--EEEEeCCEEEEEEecccccc-cccccCCeEEEEEecCCCC
Q 008035 81 DVATLTNFFQSNFGISPEEKQLSVSGRNWGEVDLNGNM--LTFMVGQKQAFEVSLADVSQ-TQLQGKNDVILEFHVDDTT 157 (580)
Q Consensus 81 d~~~l~~~~~~~~~~~l~~~els~~GwNwG~~~~~~~~--l~f~v~~k~~feip~~~is~-~~~~~KnEv~lef~~~d~~ 157 (580)
-+++.++|+.+... +++.=++++.+.+|+.+...+.. +.+.|.|---|.||+..|+= +.+.|+.=++-+..+.-+-
T Consensus 27 ~~~~~k~f~~~ki~-~~~~PeV~v~~v~~~~~~l~~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tI 105 (174)
T 1yyc_A 27 LLDKAKGFFAEKLA-NIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSL 105 (174)
T ss_dssp HHHHHHHHHHHTTT-TSCCCEEEEEEEEEEEECSSSEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBC
T ss_pred HHHHhhhhHHHhhc-CCCCCEEEEEEeEEeccccceEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceE
Confidence 46788888877654 26788899999999999999884 55778887789999888875 3443443333333322221
Q ss_pred CCCCCCceEEEEEEec
Q 008035 158 GANEKDSLMEISFHIP 173 (580)
Q Consensus 158 ~~~~~d~L~EmRF~vP 173 (580)
...+...+++.+.+|
T Consensus 106 -pa~g~~~v~Vpv~v~ 120 (174)
T 1yyc_A 106 -VGSGTTVLDVPVKVA 120 (174)
T ss_dssp -CSSEEEEEEEEEEES
T ss_pred -CCCCcEEEEEEEEEE
Confidence 234567788888776
No 43
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=33.95 E-value=3.2e+02 Score=26.12 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=57.2
Q ss_pred eeeccCCcccCCC--------CceeEeeccCceeEEEeccCceeecc------CCcE--EEEcC--ceeEEEEEEecCCC
Q 008035 335 KITKPGKFRSAQD--------GYAVKSSLKAEDGVLYPLEKSFFFLP------KPPT--LILHE--EIDYVEFERHAAGG 396 (580)
Q Consensus 335 ki~~P~~F~s~~g--------~~~VkCs~KA~~G~LyPLe~~flfl~------KPp~--~I~~~--eI~~V~f~Rv~~~~ 396 (580)
+|+.|..|....- .--|.+.+|...-..-++++.||++- |-.. -|||. .|..|+++-.|
T Consensus 6 ~ii~p~D~dk~di~~~Ll~EdgE~I~~ayk~irD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAG--- 82 (193)
T 3b77_A 6 QVIHPDDFDKAAADDYVLHEDGEKIYFLIKSKTDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAG--- 82 (193)
T ss_dssp EECCGGGSTTSGGGGGSCGGGTCCEEEEEECSSEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCC---
T ss_pred cccChhhCChhhhhhhccCCCCCEEeeeeeecceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEecc---
Confidence 5677877776421 22466778888889999999999964 3333 49999 99999998533
Q ss_pred cceeeEEEEEEEe---CCce--EEEeecChhhhhhHHHHHh
Q 008035 397 SNMHYFDLLIRLK---TEQE--HLFRNIQRNEYHNLFDFIS 432 (580)
Q Consensus 397 ~~~rTFDl~V~~K---~g~~--~~Fs~I~reE~~~L~~fl~ 432 (580)
|||+-..++ ++.. +.|.-=+.++...|...|.
T Consensus 83 ----tfDlDaElki~i~~~~~~Ief~K~~~~di~~lyk~L~ 119 (193)
T 3b77_A 83 ----TVDLDVEIKFEIGGKHYSIDVDKKQLEHVKDLYKALL 119 (193)
T ss_dssp ----SSCCEEEEEEEETTEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred ----eeccCccEEEEEcCceEEEEeCCcchhhHHHHHHHHH
Confidence 355444443 2344 4444433344555555443
No 44
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=31.15 E-value=76 Score=25.65 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=37.5
Q ss_pred cceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 008035 59 TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (580)
Q Consensus 59 ~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~G 106 (580)
|.+|.|.+-+|..+.+.=-...-+..|+..+...+++..+...|...|
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G 48 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 48 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECC
Confidence 356777777888888876677779999999999999988777666544
No 45
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=29.02 E-value=15 Score=37.05 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=28.5
Q ss_pred EeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeeeeee
Q 008035 66 TKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGRNWG 110 (580)
Q Consensus 66 ~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~GwNwG 110 (580)
.-.|.-.++.++...+...|.+.++..-.+ +.+.+.|.+.+
T Consensus 5 s~~~~~L~~~~l~~~~~~~l~~~l~~~~~L----~~L~L~~n~i~ 45 (386)
T 2ca6_A 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSV----KEIVLSGNTIG 45 (386)
T ss_dssp ECTTCCCEESSCCSHHHHTTSHHHHHCSCC----CEEECTTSEEC
T ss_pred EecCcccccCCCCHHHHHHHHHHHhcCCCc----cEEECCCCCCC
Confidence 335677889999999999999988876443 34555554433
No 46
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=25.78 E-value=80 Score=25.21 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=36.9
Q ss_pred cceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 008035 59 TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (580)
Q Consensus 59 ~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~G 106 (580)
..+|.|.+-+|..+.+.=-...-+..|+..+...+++..+...|...|
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G 52 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG 52 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 346666666787777765567779999999999999988877776544
No 47
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=25.71 E-value=67 Score=29.23 Aligned_cols=39 Identities=10% Similarity=0.369 Sum_probs=32.0
Q ss_pred cCceeEEEeccCceeeccC--C---cEEEEcCceeEEEEEEecC
Q 008035 356 KAEDGVLYPLEKSFFFLPK--P---PTLILHEEIDYVEFERHAA 394 (580)
Q Consensus 356 KA~~G~LyPLe~~flfl~K--P---p~~I~~~eI~~V~f~Rv~~ 394 (580)
+...|.||-+..=+||+.+ | .+.+||..|..|+++--..
T Consensus 49 ~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~f 92 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFL 92 (145)
T ss_dssp TCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSS
T ss_pred CCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCcc
Confidence 4568999999999999954 2 3689999999999976443
No 48
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=25.20 E-value=82 Score=25.02 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=39.5
Q ss_pred EecCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeeee
Q 008035 55 KVPRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSGR 107 (580)
Q Consensus 55 r~~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~Gw 107 (580)
+.+...++.|...+|..+.++=-...-+..|++.+....++..+...|..+|+
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk 65 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGR 65 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCE
Confidence 33455677777767877777655667799999999999999988887776553
No 49
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=23.95 E-value=1.2e+02 Score=24.92 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=38.3
Q ss_pred CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 008035 58 RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (580)
Q Consensus 58 ~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~G 106 (580)
+..+|.|..-+|..+.+.=-...-+..|+..+...+++..+...|..+|
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 69 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 69 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC
Confidence 4567777777888888876666679999999999999988877666554
No 50
>2ehp_A AQ_1627 protein; putative protein, NPPSFA, national project protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eiu_A
Probab=22.92 E-value=1.2e+02 Score=26.45 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=35.8
Q ss_pred EecCcceEEEEEeCC--cEEEEcCCChhhHHHHHHHHHhhcCCCCc
Q 008035 55 KVPRTNQLGVRTKDG--LYYKFTGFRDQDVATLTNFFQSNFGISPE 98 (580)
Q Consensus 55 r~~~~~~Lri~~k~~--~~~~fdGF~~~d~~~l~~~~~~~~~~~l~ 98 (580)
.+..+-+.++.++.| .+.-|.|..+.|+.+|...+-..|++.-.
T Consensus 71 ~vgeg~e~~lflk~GeidvL~F~gL~e~D~kKLEsILFgRyniPrK 116 (126)
T 2ehp_A 71 NVGKGGDIKLFLQKGEIYVLEFQPLSETDIKKLESILFGRAPIPKK 116 (126)
T ss_dssp EESSCCSEEEEEECSSSEEEEEESCCHHHHHHHHHHHTSSSCCCCC
T ss_pred EeecCCceeEEEeeCcEEEEEEcCCChhhHHHHHHHhhccCCCCcc
Confidence 344566677778877 58899999999999999999999988643
No 51
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=22.21 E-value=1.3e+02 Score=24.06 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.6
Q ss_pred eEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 008035 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (580)
Q Consensus 61 ~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~G 106 (580)
++.|.+-+|..+.++=-..+-+..|+..+....++..+...|..+|
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 47 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG 47 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECC
Confidence 5666666888888877677789999999999999988777665544
No 52
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=22.14 E-value=2.6e+02 Score=25.43 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCcEEEEcC-ceeEEEEEEecCCCcceeeEEEEEEEeCCceEEEeecChhhhhhHHHHHhcC
Q 008035 374 KPPTLILHE-EIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGK 434 (580)
Q Consensus 374 KPp~~I~~~-eI~~V~f~Rv~~~~~~~rTFDl~V~~K~g~~~~Fs~I~reE~~~L~~fl~~k 434 (580)
|.|..+.++ .|.+|.|...|. +---|-++++|...+-+.-++..+-+.|+.||..-
T Consensus 62 ~~~ktFQL~nNIksVvlr~~g~-----~qn~LhLTlknn~fLfIdKLs~~DaeqLK~FLd~v 118 (141)
T 3u12_A 62 GIPRIFQLSHNIKNVVLRPSGA-----KQSRLMLTLQDNSFLSIDKVPSKDAEEMRLFLDAV 118 (141)
T ss_dssp SCCEEEECTTTEEEEEEEECST-----TEEEEEEEETTCCEEEEEEEEHHHHHHHHHHHHHH
T ss_pred CccEEEEcccceeeEEEecCCC-----ccceEEEEEecCcEEEEecCCHHHHHHHHHHHHHh
Confidence 665655555 599999987654 44568899999989999999999999999999874
No 53
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=21.07 E-value=1.2e+02 Score=24.35 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=37.1
Q ss_pred CcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 008035 58 RTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (580)
Q Consensus 58 ~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~G 106 (580)
...+|.|.+-+|..+.+.=-...-+..|+..+....|+..+...|..+|
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G 64 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 64 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECC
Confidence 3456666666777777765567779999999999999988877666654
No 54
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=20.86 E-value=25 Score=35.23 Aligned_cols=11 Identities=9% Similarity=0.301 Sum_probs=5.7
Q ss_pred eeEEEEEEEeC
Q 008035 400 HYFDLLIRLKT 410 (580)
Q Consensus 400 rTFDl~V~~K~ 410 (580)
+.|-|+++++.
T Consensus 101 ~gf~i~F~F~~ 111 (264)
T 2zd7_A 101 RDFSITFHFHG 111 (264)
T ss_dssp TCEEEEEEECC
T ss_pred CceEEEEEeCC
Confidence 44555555543
No 55
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=20.83 E-value=1.3e+02 Score=23.35 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=36.5
Q ss_pred ceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 008035 60 NQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (580)
Q Consensus 60 ~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~G 106 (580)
.++.|...+|..+.+.=-...-+..|+..+...+++..+...|...|
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g 50 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 50 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 45666666777777776677789999999999999988777666554
No 56
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=20.41 E-value=1.8e+02 Score=26.48 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=42.9
Q ss_pred EEeecC-CcceeEEEEe-cCcceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcC
Q 008035 41 VEVDKV-DIAGVTWMKV-PRTNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFG 94 (580)
Q Consensus 41 ~~i~~~-di~~~~w~r~-~~~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~ 94 (580)
.++.=+ .|+++...-- .+-..|.+-++|+.++.+|.-...|.++|+.|+..-.-
T Consensus 65 ktFQL~nNIksVvlr~~g~~qn~LhLTlknn~fLfIdKLs~~DaeqLK~FLd~v~Q 120 (141)
T 3u12_A 65 RIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFLSIDKVPSKDAEEMRLFLDAVHQ 120 (141)
T ss_dssp EEEECTTTEEEEEEEECSTTEEEEEEEETTCCEEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred EEEEcccceeeEEEecCCCccceEEEEEecCcEEEEecCCHHHHHHHHHHHHHhcc
Confidence 444443 5777766553 36668999999999999999999999999999988643
No 57
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=20.41 E-value=1.4e+02 Score=23.09 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=37.4
Q ss_pred cceEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 008035 59 TNQLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (580)
Q Consensus 59 ~~~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~G 106 (580)
..++.|.+.+|..+.++=-...-+..|+..+....++..+...|...|
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G 51 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG 51 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECC
Confidence 356667766787777766667789999999999999998877776554
No 58
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=20.03 E-value=1.7e+02 Score=21.94 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=34.1
Q ss_pred eEEEEEeCCcEEEEcCCChhhHHHHHHHHHhhcCCCCceeeeeeee
Q 008035 61 QLGVRTKDGLYYKFTGFRDQDVATLTNFFQSNFGISPEEKQLSVSG 106 (580)
Q Consensus 61 ~Lri~~k~~~~~~fdGF~~~d~~~l~~~~~~~~~~~l~~~els~~G 106 (580)
++.|...+|..+.+.==...-+..|++.+.+.+++......|...|
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g 47 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECC
Confidence 4666666777777664445669999999999999887776666554
Done!