BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008037
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 138/234 (58%), Gaps = 12/234 (5%)
Query: 309 NSRYCLVASKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQT 368
+++Y V ++VGI L ++V+ E ++ ++ VG G+MG +GNKG +A+ H T
Sbjct: 73 DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNT 132
Query: 369 SFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGD 428
S C + SHL + +E + RRN D +I + +F + + + P TI HD ++WLGD
Sbjct: 133 SICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQPDPS---LPPLTISNHDVILWLGD 187
Query: 429 LNYRI-ALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYSTN 487
LNYRI L+ K L+E +++++L DQL+ + VF G+ EG++ F PTYKY T
Sbjct: 188 LNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTG 247
Query: 488 SDRYAGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGES-RFSDHRPVYGIF 540
S DD EK R PAWCDRILW G+ + QLSY + + SDH+PV +F
Sbjct: 248 S-----DDWDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVF 296
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 88 VQNHSVFVATWNVAGRSPPSNLSLDDWLHASPPA-DIYVLGFQEI 131
+QN F T+NV G+SP L L WL A D+Y +GFQE+
Sbjct: 2 IQNFRFFAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVGFQEL 44
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 138/234 (58%), Gaps = 12/234 (5%)
Query: 309 NSRYCLVASKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQT 368
+++Y V ++VGI L ++V+ E ++ ++ VG G+MG +GNKG +A+ H T
Sbjct: 76 DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNT 135
Query: 369 SFCFICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGD 428
S C + SHL + +E + RRN D +I + +F + + + P TI HD ++WLGD
Sbjct: 136 SICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQPDPS---LPPLTISNHDVILWLGD 190
Query: 429 LNYRI-ALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYSTN 487
LNYRI L+ K L+E +++++L DQL+ + VF G+ EG++ F PTYKY T
Sbjct: 191 LNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTG 250
Query: 488 SDRYAGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGES-RFSDHRPVYGIF 540
S DD EK R PAWCDRILW G+ + QLSY + + SDH+PV +F
Sbjct: 251 S-----DDWDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVF 299
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 88 VQNHSVFVATWNVAGRSPPSNLSLDDWLHASPPA-DIYVLGFQEI 131
+QN F T+NV G+SP L L WL A D+Y +GFQE+
Sbjct: 5 IQNFRFFAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVGFQEL 47
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 121/246 (49%), Gaps = 18/246 (7%)
Query: 312 YCLVASKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFC 371
Y + S Q+VG L ++ + +KN++ + GL G GNKG++A+ T C
Sbjct: 102 YVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLC 161
Query: 372 FICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEKSPETILQHDRVIWLGDLNY 431
FI SHL +G D+ R+ D I RF R S I HD V+W GD NY
Sbjct: 162 FITSHLAAGYTNYDE--RDHDYRTIASGLRFRRGRS---------IFNHDYVVWFGDFNY 210
Query: 432 RIALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYSTNSDRY 491
RI+L Y + L E DQL K+ G+VF ++E I FPPTYK+ +D Y
Sbjct: 211 RISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIY 270
Query: 492 AGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGESRFSDHRPVYGIFWAEVESSHNRL 551
D H R PAW DRIL+ GE L SY +SDHRP+Y + A + +R
Sbjct: 271 DTSDKH-----RVPAWTDRILYRGE-LVPHSYQSVPLYYSDHRPIYATYEANIVKV-DRE 323
Query: 552 KKSISY 557
KK I +
Sbjct: 324 KKKILF 329
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 12/90 (13%)
Query: 89 QNHSVFVATWNVAGRSPPSNLSLDDWL--HASPPADIYVLGFQEIVPLNAGNVLGAEDNG 146
+N +FVA++N+ G S + L++WL +P ADIYV+GFQEIV L V+ A+
Sbjct: 23 KNVKIFVASYNLNGCS--ATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISAD--- 77
Query: 147 PAKK--WLALIRKTLNSLPGTSGSSGCYTQ 174
PAK+ W + +++ LN G S Y Q
Sbjct: 78 PAKRREWESCVKRLLN---GKCTSGPGYVQ 104
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 18/241 (7%)
Query: 315 VASKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFCFIC 374
+A + + I + V V+ E + + ++ S V G+ LGNKG++ VS + + TSF F+
Sbjct: 84 IAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVN 143
Query: 375 SHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGDEK--SPETILQHDRVIWLGDLNYR 432
HLTSG ++ RRN + ++ILR + S GD + + + L+ + W GDLNYR
Sbjct: 144 CHLTSGNEK--TARRNQNYLDILR------LLSLGDRQLNAFDISLRFTHLFWFGDLNYR 195
Query: 433 IALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYSTNS-DRY 491
+ ++ + + + + LL DQL E+ + +VF+ ++E +I FPPTY+Y S D Y
Sbjct: 196 LDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTY 255
Query: 492 AGDDMHPKEKR-RTPAWCDRILW--YGEGLHQLSYVRG---ESRFSDHRPVYGIFWAEVE 545
A P R P+WCDRILW Y E H + G + SDH PV+G F V
Sbjct: 256 AWHKQKPTGVRTNVPSWCDRILWKSYPE-THIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314
Query: 546 S 546
S
Sbjct: 315 S 315
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 30/95 (31%)
Query: 79 NLDHPRIIDVQNHSVFVATWNVAGRSPPSNL-----------SLDDWLHASPPADIYVLG 127
++D P +I SVF+ TWN+ PP N+ +LD+ + + P DIYV G
Sbjct: 1 SMDEPDMI-----SVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDE-VTVTIPHDIYVFG 54
Query: 128 FQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLNSL 162
QE N +G ++WL L+R L L
Sbjct: 55 TQE-------NSVG------DREWLDLLRGGLKEL 76
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 17/250 (6%)
Query: 312 YCLVASKQMVGIFLTVWVRSELRDHVKNMKVSCVGRGLMGYLGNKGSIAVSMLLHQTSFC 371
Y L++S +++++++R +L ++ S V ++ + KG++ +S TSF
Sbjct: 87 YVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFL 146
Query: 372 FICSHLTSGQKEGDQLRRNADVMEILRKTRFPRVNSAGD---EKSPETILQHDRVIWLGD 428
FI SH TSG +G R D ++ PR + + + + D V W GD
Sbjct: 147 FITSHFTSG--DGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGD 204
Query: 429 LNYRIALNYRSAKALV---EMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPPTYKYS 485
N+R++ AL+ + + LL++DQL +E R+G +F G+ E I+F P+YK+
Sbjct: 205 FNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFD 264
Query: 486 TNSDRYAGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGES----RFSDHRPVYGIFW 541
D Y K+RTP++ DR+L+ + V S + SDHRPVYG+F
Sbjct: 265 IGKDTY-----DSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFR 319
Query: 542 AEVESSHNRL 551
+V + +
Sbjct: 320 VKVRPGRDNI 329
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 8/47 (17%)
Query: 89 QNHSVFVATWNVAGRS--PPSNLSLDDWL---HASPPADIYVLGFQE 130
+N ++FVATWN+ G+ PP SLD++L A D+YV+G QE
Sbjct: 24 RNVALFVATWNMQGQKELPP---SLDEFLLPAEADYAQDLYVIGVQE 67
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 13/124 (10%)
Query: 421 DRVIWLGDLNYRIALNYRSAKALVEMQNWRVLLENDQLRKEQRQGRVFVGWNEGKIYFPP 480
D + W+GDLN R+ N AK+LV+ N L+ DQL+K + Q ++F GW E ++ F P
Sbjct: 164 DFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQVTFKP 222
Query: 481 TYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILW---YGEGLHQLSYVRGES-RFSDHRPV 536
TYK+ N+D Y + TP+W DR L+ G+ + LSY + + ++HRPV
Sbjct: 223 TYKFKPNTDEY--------DLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPV 274
Query: 537 YGIF 540
F
Sbjct: 275 LAKF 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,824,660
Number of Sequences: 62578
Number of extensions: 752251
Number of successful extensions: 1562
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1534
Number of HSP's gapped (non-prelim): 11
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)