BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008038
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/552 (68%), Positives = 437/552 (79%), Gaps = 1/552 (0%)
Query: 29 SKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIH 88
S+ RHYKWEVEYMFW+P+C E+IVMGINGQFPGPTIRA AGD++ VELTNKL+TEGVVIH
Sbjct: 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIH 60
Query: 89 WHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLI 148
WHGI Q GTPWADGTASISQC INPGET+ Y F VD GT+FYHGHLGMQRSAGLYGSLI
Sbjct: 61 WHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLI 120
Query: 149 VDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNC 208
VD G+KEPFHYDGE NLLLSDWWH+S+H+QEVGLSS+P+RWIGEPQT+L+NGRGQF+C
Sbjct: 121 VDPPQGKKEPFHYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDC 180
Query: 209 SLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVV 268
S+AA + + + E CKL+G+E CAP I HV P KTYR+RI + NH+++VV
Sbjct: 181 SIAAKY-DSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVV 239
Query: 269 EADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYH 328
EADGNYVQPF D+DIYSGESYSVL+TT+Q+PS NYW+S G R R P TPP LTLLNY
Sbjct: 240 EADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLLNYL 299
Query: 329 PTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGF 388
P S SK+P SPPP TP WDD+D SK+F+ +I A MGSPKPP F+RR+ LLNTQN ING+
Sbjct: 300 PNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVINGY 359
Query: 389 TKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVY 448
KWAIN+VSL LPPTPYLG++KY L AFDQN PPE F +YD+ PP N T +G+GVY
Sbjct: 360 VKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVY 419
Query: 449 MLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXX 508
+ VDVILQNAN ++ NLSE HPWHLHGHDFWVLG G+GKF+ E+E
Sbjct: 420 QFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPL 479
Query: 509 XXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACG 568
T VIFPYGWTA+RFVADNPG WAFHCHIEPH H+GMGVV A GVE VG IP +ALACG
Sbjct: 480 RNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPTKALACG 539
Query: 569 LTGKRFMNPKQN 580
T K +N +N
Sbjct: 540 GTAKSLINNPKN 551
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 159/531 (29%), Positives = 222/531 (41%), Gaps = 98/531 (18%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
+PD + NG FPGP I GD + LTN + IHWHG+ Q GT W
Sbjct: 16 TPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A ++QCPI G ++LY F V D+AGT++YH HL Q GL G L+V D +D
Sbjct: 76 ADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPSDPYAS 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + ++ LSDW+H + ++G + P ++LING G+ F+
Sbjct: 136 MYDVDDDTTVITLSDWYHTAA---KLGPAFPP-----NADSVLINGLGR--------FAG 179
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
G+A ++ V+ NK YR R+ + H M ++E DG +
Sbjct: 180 GNASDLA----------VITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHE 229
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPAL--TLLNY------H 328
P EVD + I++ + YS +L Q NYWI A T L +L Y
Sbjct: 230 PLEVDSIQIFASQRYSFVLNATQSVD-NYWIRAIPNTGTIDTTGGLNSAILRYSGADIVD 288
Query: 329 PT---SASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTN--FHRRLTLLNTQN 383
PT + S IPL + P + SP P + +N
Sbjct: 289 PTANATTSVIPLVETDLVP------------------LDSPAAPGDPVVGGVDLAMNLDF 330
Query: 384 TINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTL 443
+ NG T + INN +L P P L I G + A D L
Sbjct: 331 SFNG-TNFFINNETLIPPTVPVLLQILSGAQSASD-----------------------LL 366
Query: 444 GSG-VYMLGLNTTVDVI--LQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXX 500
+G VY L LN+T+++ + N + HP+HLHGH F V+ R G D
Sbjct: 367 PTGSVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVV-RSAG---SSDYNY 422
Query: 501 XXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA 551
T P +RF DN G W HCHI+ H G +V A
Sbjct: 423 VNPVRRDTVSTGN--PGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVFA 471
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 163/534 (30%), Positives = 216/534 (40%), Gaps = 95/534 (17%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGD----TIAVELTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +NG FP P I + GD + LTN + IHWHG Q GT W
Sbjct: 16 SPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A ++QCPI G ++LY F V D+AGT++YH HL Q GL G +V D D
Sbjct: 76 ADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHAS 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D E ++ L+DW+H + +G P +G T LING G+ + A +
Sbjct: 136 RYDVDNESTVITLTDWYHTAA---RLG----PRFPLGADAT-LINGLGRSASTPTAALA- 186
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
+++VQ K YR R+ + H + V+E DG Q
Sbjct: 187 -----------------VINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQ 229
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA----GVRGRKPATPPALTLLNYHPT-- 330
P VD + I++ + YS +L NQ NYWI A G G A+ P
Sbjct: 230 PLLVDSIQIFAAQRYSFVLNANQTVG-NYWIRANPNFGTVGFAGGINSAILRYQGAPVAE 288
Query: 331 -----SASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPT--NFHRRLTLLNTQN 383
+ S IPL + P A M P PT + L L N
Sbjct: 289 PTTTQTTSVIPLIETNLHP---------------LARMPVPGSPTPGGVDKALNLAFNFN 333
Query: 384 TINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTL 443
N F INN S T P P L I G + A D + P
Sbjct: 334 GTNFF----INNASFTPPTVPVLLQILSGAQTAQD--------------LLP-------- 367
Query: 444 GSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXX 503
VY L ++T+++ L A A+ P HP+HLHGH F V+ R G T
Sbjct: 368 AGSVYPLPAHSTIEITLP-ATALAPGAP--HPFHLHGHAFAVV-RSAGSTTYNYNDPIFR 423
Query: 504 XXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETV 557
A +RF DNPG W HCHI+ H G +V A V V
Sbjct: 424 DVVSTGTPAA---GDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADV 474
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 155/530 (29%), Positives = 213/530 (40%), Gaps = 86/530 (16%)
Query: 45 PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWA 100
PD E + +N FP P I GD + L N++ ++ IHWHG Q GT WA
Sbjct: 17 PDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWA 76
Query: 101 DGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEP 158
DG A I+QCPI G ++LY F+V +AGT++YH HL Q GL G +V D D
Sbjct: 77 DGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANL 136
Query: 159 FHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNG 217
+ D E ++ L+DW+H V P R+ + LING G+ + A +
Sbjct: 137 YDVDDESTVITLADWYH-------VAAKLGP-RFPKGADSTLINGLGRSTSTPTADLA-- 186
Query: 218 SAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQP 277
++ V K YR R+ + +H++ V+EADG QP
Sbjct: 187 ----------------VISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQP 230
Query: 278 FEVDDMDIYSGESYSVLLTTNQDPSYNYWISA----GVRGRKPATPPALTLLNYHPTSAS 333
VD + I++ + YS +L NQD NYWI A G G A +L Y
Sbjct: 231 VTVDSIQIFAAQRYSFVLNANQDVD-NYWIRANPNFGTTGFADGVNSA--ILRYDDAD-- 285
Query: 334 KIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKP--PTNFHRRLTLLNTQNTINGFTKW 391
P+ P + + + L P P PT L LN +G T +
Sbjct: 286 -------PVEPVTNQTGTTLLLETDLHPLTSMPVPGNPTQGGADLN-LNMAFNFDG-TNF 336
Query: 392 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSG-VYML 450
IN S T P P L I G A D L SG VY L
Sbjct: 337 FINGESFTPPTVPVLLQIISGANTAQD-----------------------LLPSGSVYSL 373
Query: 451 GLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVL-GRGEGKFTKEDEXXXXXXXXXXX 509
N+++++ A HP+HLHGH F V+ G + +D
Sbjct: 374 PSNSSIEITFPATTAAP---GAPHPFHLHGHVFAVVRSAGSTSYNYDDPVWRDVVSTGTP 430
Query: 510 XTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGN 559
+RF DNPG W HCHI+ H G VV+A + N
Sbjct: 431 QAG-----DNVTIRFQTDNPGPWFLHCHIDFHLDAGFAVVMAEDIPNTVN 475
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 161/530 (30%), Positives = 219/530 (41%), Gaps = 88/530 (16%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +N FP P I GD + +TN + IHWHG Q GT W
Sbjct: 16 SPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A ++QCPI+ G +LY F+V D+AGT++YH HL Q GL G ++V D D K
Sbjct: 76 ADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKS 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + ++ L+DW+H L+++ + LING G+ +L A +
Sbjct: 136 LYDVDDDSTVITLADWYH---------LAAKVGSPVPTADATLINGLGRSIDTLNADLA- 185
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
++ V K YR R+ + H + V+EAD ++
Sbjct: 186 -----------------VITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLK 228
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA----GVRGRKPATPPALTLLNYHPTSA 332
P VD + I++ + YS +L +QD NYWI A G R A +L Y
Sbjct: 229 PQTVDSIQIFAAQRYSFVLNADQDVG-NYWIRALPNSGTRNFDGGVNSA--ILRYD---- 281
Query: 333 SKIPLSPPPI-TPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT-- 389
P+ P TP + S + + A GSP P L L N GF
Sbjct: 282 GAAPVEPTTSQTPSTNPLVESALTTLEGTAAPGSPAPGG---VDLAL----NMAFGFAGG 334
Query: 390 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSG-VY 448
K+ IN S T P P L I G + A D L SG VY
Sbjct: 335 KFTINGASFTPPTVPVLLQILSGAQSAQD-----------------------LLPSGSVY 371
Query: 449 MLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXX 508
L N +++ L A A P HP+HLHGH F V+ R G T E
Sbjct: 372 SLPANADIEISLP-ATAAAPGFP--HPFHLHGHTFAVV-RSAGSSTYNYENPVYRDVVST 427
Query: 509 XXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVG 558
P +RF DNPG W HCHI+ H G VV+A + V
Sbjct: 428 GS-----PGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPEVA 472
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 158/529 (29%), Positives = 218/529 (41%), Gaps = 86/529 (16%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +N FP P I GD + +TN + IHWHG Q GT W
Sbjct: 16 SPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A ++QCPI+ G +LY F+V D+AGT++YH HL Q GL G ++V D D
Sbjct: 76 ADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHAS 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + ++ L+DW+H L+++ + LING G+ +LAA +
Sbjct: 136 LYDVDDDSTVITLADWYH---------LAAKVGAPVPTADATLINGLGRSAATLAADLA- 185
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
++ V K YR R+ + H + V+EAD ++
Sbjct: 186 -----------------VITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLK 228
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA----GVRGRKPATPPALTLLNYHPTSA 332
P VD + I++ + YS +L +QD NYWI A G + T A +L Y
Sbjct: 229 PHTVDSLQIFAAQRYSFVLNADQDVD-NYWIRALPNSGTQNFAGGTNSA--ILRYD---- 281
Query: 333 SKIPLSPPPI-TPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT-- 389
P+ P TP + S + K A GSP P L L N GF
Sbjct: 282 GAAPVEPTTSQTPSTNPLVESALTTLKGTAAPGSPTPGG---VDLAL----NMAFGFAGG 334
Query: 390 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYM 449
+ IN S T P P L I G + A D + P VY
Sbjct: 335 NFTINGASFTPPTVPVLLQILSGAQSAAD--------------LLP--------AGSVYS 372
Query: 450 LGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXX 509
L N +++ L A A P HP+HLHGH F V+ R G T
Sbjct: 373 LPANADIEISLP-ATAAAPGFP--HPFHLHGHVFAVV-RSAGSSTYN-----YANPVYRD 423
Query: 510 XTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVG 558
+ P +RF DNPG W HCHI+ H G VV+A + V
Sbjct: 424 VVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPDVA 472
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 158/529 (29%), Positives = 218/529 (41%), Gaps = 86/529 (16%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +N FP P I GD + +TN + IHWHG Q GT W
Sbjct: 16 SPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A ++QCPI+ G +LY F+V D+AGT++YH HL Q GL G ++V D D
Sbjct: 76 ADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHAS 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + ++ L+DW+H L+++ + LING G+ +LAA +
Sbjct: 136 LYDVDDDSTVITLADWYH---------LAAKVGAPVPTADATLINGLGRSAATLAADLA- 185
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
++ V K YR R+ + H + V+EAD ++
Sbjct: 186 -----------------VITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLK 228
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA----GVRGRKPATPPALTLLNYHPTSA 332
P VD + I++ + YS +L +QD NYWI A G + T A +L Y
Sbjct: 229 PHTVDSLQIFAAQRYSFVLNADQDVD-NYWIRALPNSGTQNFAGGTNSA--ILRYD---- 281
Query: 333 SKIPLSPPPI-TPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT-- 389
P+ P TP + S + K A GSP P L L N GF
Sbjct: 282 GAAPVEPTTSQTPSTNPLVESALTTLKGTAAPGSPTPGG---VDLAL----NMAFGFAGG 334
Query: 390 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYM 449
+ IN S T P P L I G + A D + P VY
Sbjct: 335 NFTINGASFTPPTVPVLLQILSGAQSAAD--------------LLP--------AGSVYS 372
Query: 450 LGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXX 509
L N +++ L A A P HP+HLHGH F V+ R G T
Sbjct: 373 LPANADIEISLP-ATAAAPGFP--HPFHLHGHVFAVV-RSAGSSTYN-----YANPVYRD 423
Query: 510 XTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVG 558
+ P +RF DNPG W HCHI+ H G VV+A + V
Sbjct: 424 VVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPDVA 472
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 151/525 (28%), Positives = 222/525 (42%), Gaps = 91/525 (17%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPW 99
SPD + +NG GP IR D + + N L ++ IHWHG+ Q GT W
Sbjct: 17 SPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFK-VDKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG ++QCPI+PG +LY+F AGT++YH H G Q GL G +++ D D
Sbjct: 76 ADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAA 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D E ++ L+DW+H + + ++ +P LING+G++ AA S
Sbjct: 136 LYDEDDENTIITLADWYH---------IPAPSIQGAAQPDATLINGKGRYVGGPAAELS- 185
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
I++V+ K YR+R+ + H++ ++E DG +
Sbjct: 186 -----------------IVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTE 228
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV-RGRKP-----ATPPALTLLNYHPT 330
P VD + I++G+ YS +L NQ P NYWI A +GR A +L Y
Sbjct: 229 PHTVDRLQIFTGQRYSFVLDANQ-PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGA 287
Query: 331 SASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKP-PTNFHRRLTLLNTQNTINGFT 389
+ + S P + ++ D A G P P + + R L GF+
Sbjct: 288 ANADPTTSANPNPAQLNEADLHALIDP---AAPGIPTPGAADVNLRFQL--------GFS 336
Query: 390 --KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSG- 446
++ IN + P P L I G + +AN L +G
Sbjct: 337 GGRFTINGTAYESPSVPTLLQIMSGAQ-----------------------SANDLLPAGS 373
Query: 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXX 506
VY L N V++++ P HP+HLHGH F V+ R G T
Sbjct: 374 VYELPRNQVVELVVPAGVLGGP-----HPFHLHGHAFSVV-RSAGSSTYNFVNPVKRDVV 427
Query: 507 XXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA 551
T +RFV DNPG W FHCHIE H G+ +V A
Sbjct: 428 SLGVTG-----DEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFA 467
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 151/525 (28%), Positives = 222/525 (42%), Gaps = 91/525 (17%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPW 99
SPD + +NG GP IR D + + N L ++ IHWHG+ Q GT W
Sbjct: 17 SPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFK-VDKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG ++QCPI+PG +LY+F AGT++YH H G Q GL G +++ D D
Sbjct: 76 ADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAA 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D E ++ L+DW+H + + ++ +P LING+G++ AA S
Sbjct: 136 LYDEDDENTIITLADWYH---------IPAPSIQGAAQPDATLINGKGRYVGGPAAELS- 185
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
I++V+ K YR+R+ + H++ ++E DG +
Sbjct: 186 -----------------IVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTE 228
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV-RGRKP-----ATPPALTLLNYHPT 330
P VD + I++G+ YS +L NQ P NYWI A +GR A +L Y
Sbjct: 229 PHTVDRLQIFTGQRYSFVLDANQ-PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGA 287
Query: 331 SASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKP-PTNFHRRLTLLNTQNTINGFT 389
+ + S P + ++ D A G P P + + R L GF+
Sbjct: 288 ANADPTTSANPNPAQLNEADLHALIDP---AAPGIPTPGAADVNLRFQL--------GFS 336
Query: 390 --KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSG- 446
++ IN + P P L I G + +AN L +G
Sbjct: 337 GGRFTINGTAYESPSVPTLLQIMSGAQ-----------------------SANDLLPAGS 373
Query: 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXX 506
VY L N V++++ P HP+HLHGH F V+ R G T
Sbjct: 374 VYELPRNQVVELVVPAGVLGGP-----HPFHLHGHAFSVV-RSAGSSTYNFVNPVKRDVV 427
Query: 507 XXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA 551
T +RFV DNPG W FHCHIE H G+ +V A
Sbjct: 428 SLGVTG-----DEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFA 467
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 156/531 (29%), Positives = 216/531 (40%), Gaps = 103/531 (19%)
Query: 44 SPD--CKESIVMGINGQFPGPTIRARAGDTIAV----ELTNKLYTEGVVIHWHGIRQLGT 97
SPD +E++V +NG P P I GD + +LTN + IHWHG Q GT
Sbjct: 16 SPDGFAREAVV--VNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGT 73
Query: 98 PWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGE 155
WADG A ++QCPI G ++LY F+V D+AGT++YH HL Q GL G +V D D
Sbjct: 74 NWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPH 133
Query: 156 KEPFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHF 214
+ D + ++ L+DW+H V P G T LING G
Sbjct: 134 ASLYDIDNDDTVITLADWYH-------VAAKLGPRFPFGSDST-LINGLG---------- 175
Query: 215 SNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNY 274
+ G ++ V K YR R+ + NH M ++EAD
Sbjct: 176 --------RTTGIAPSDLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSIN 227
Query: 275 VQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA----GVRGRKPATPPALTLLN---- 326
QP EVD + I++ + YS +L +Q P NYWI A G G A+ +
Sbjct: 228 TQPLEVDSIQIFAAQRYSFVLDASQ-PVDNYWIRANPAFGNTGFAGGINSAILRYDGAPE 286
Query: 327 YHPTSASKIPLSP------PPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLN 380
PTS P P P++P + GSP+ P + L L+
Sbjct: 287 IEPTSVQTTPTKPLNEVDLHPLSP---------------MPVPGSPE-PGGVDKPLNLVF 330
Query: 381 TQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNAN 440
N N F IN+ + P P L I G + A Q+ PE
Sbjct: 331 NFNGTNFF----INDHTFVPPSVPVLLQILSGAQAA--QDLVPE---------------- 368
Query: 441 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXX 500
V++L N+++++ A A P HP+HLHGH F V+ D
Sbjct: 369 ----GSVFVLPSNSSIEISFP-ATANAPGFP--HPFHLHGHAFAVVRSAGSSVYNYDNPI 421
Query: 501 XXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA 551
P +RF +NPG W HCHI+ H G VV+A
Sbjct: 422 FRDVVSTGQ------PGDNVTIRFETNNPGPWFLHCHIDFHLDAGFAVVMA 466
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 153/524 (29%), Positives = 212/524 (40%), Gaps = 90/524 (17%)
Query: 57 GQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWADGTASISQCPIN 112
G FPGP I GD + N+L ++ IHWHG Q GT WADG A I+QCPI
Sbjct: 30 GTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPII 89
Query: 113 PGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-L 169
G ++ Y F V AGTY+YH HL Q GL G +V D D + + D + ++ L
Sbjct: 90 VGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITL 149
Query: 170 SDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQ 229
+DW+H E G + + LI+G G+ + ++AA
Sbjct: 150 ADWYHVLAKEMGAGGAIT-------ADSTLIDGLGRTHVNVAA----------------- 185
Query: 230 CAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQPFEVDDMDIYSGE 289
++ V+ K YR+R+ + H M ++E DG Q VD++ I++ +
Sbjct: 186 VPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQ 245
Query: 290 SYSVLLTTNQDPSYNYWISA----GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPR 345
YS +L NQ P NYWI A G G A +L Y + + P+T
Sbjct: 246 RYSFVLNANQ-PVGNYWIRANPNSGGEGFDGGINSA--ILRYDGATTAD------PVTVA 296
Query: 346 WDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT--KWAINNVSLTLPPT 403
H+K + P N H+ N ++ GF + IN VS T P
Sbjct: 297 --STVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNLSL-GFACGNFVINGVSFTPPTV 353
Query: 404 PYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSG-VYMLGLNTTVDVILQN 462
P L I G A D L SG V L N+T+++ L
Sbjct: 354 PVLLQICSGANTAAD-----------------------LLPSGSVISLPSNSTIEIALPA 390
Query: 463 ANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTAL 522
A P HP+HLHGHDF V + D+ + +
Sbjct: 391 GAAGGP-----HPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNV------TI 439
Query: 523 RFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALA 566
RF DNPG W HCHI+ H G +V A +IPN A A
Sbjct: 440 RFCTDNPGPWFLHCHIDWHLDAGFAIVFA------EDIPNTASA 477
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 146/532 (27%), Positives = 212/532 (39%), Gaps = 84/532 (15%)
Query: 30 KTRHYKWEVEYMFWSPD-CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIH 88
+T + W + + + D K V+ NGQFP P I GD + + LTN + +H
Sbjct: 1 ETHTFNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMH 60
Query: 89 WHGIRQLGTPWADGTASISQCPINPGETYLYRFKVD-KAGTYFYHGHLGMQRSAGLYGSL 147
+HG+ Q GT DG ++QCPI PG T LY F VD GTY+YH H Q G+ G
Sbjct: 61 FHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLF 120
Query: 148 IVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSS--RPLRWIGEPQTLLINGRGQ 205
I+ + P+ YD E +L LS+W+H V + S P PQ L++N
Sbjct: 121 II---KDDSFPYDYDEELSLSLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMN 177
Query: 206 FNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKM 265
VQP+ TY LRI +++H+M
Sbjct: 178 LTWE---------------------------VQPDTTYLLRIVNVGGFVSQYFWIEDHEM 210
Query: 266 VVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLL 325
VVE DG + D + I + Y+VL+ T D N+ I P+ L
Sbjct: 211 TVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQL 270
Query: 326 NYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIF-------ALMGSPKPPTNFHRRLTL 378
N + S + + P + D +F + + A+ G P H
Sbjct: 271 N----ATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQPYEKEAIYGEPD-----HVITVD 321
Query: 379 LNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVN 438
+ N NG NN++ T P P L ++ +G N S Y
Sbjct: 322 VVMDNLKNGVNYAFFNNITYTAPKVPTLMTVL--------SSGDQANNSEIY-------G 366
Query: 439 ANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGR--------GE 490
+NT ++L + V+++L N + + HP+HLHGH F + R GE
Sbjct: 367 SNT----HTFILEKDEIVEIVLNNQD------TGTHPFHLHGHAFQTIQRDRTYDDALGE 416
Query: 491 GKFTKE-DEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPH 541
+ + D T + P +RF ADNPG W FHCHIE H
Sbjct: 417 VPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 145/530 (27%), Positives = 207/530 (39%), Gaps = 99/530 (18%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +NG PGP + GD + LTN + IHWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A I+QCPI+PG ++LY F+V D+AGT++YH HL Q GL G +V D D
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHAS 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + ++ L+DW+H + R+ G LING+G+ A S
Sbjct: 136 RYDVDNDDTVITLADWYHTAAKLGP--------RFPGGADATLINGKGRAPSDSVAELS- 186
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
++ V K YR R+ + H + ++E D Q
Sbjct: 187 -----------------VIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQ 229
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIP 336
P EVD + I++ + YS +L NQ NYWI A
Sbjct: 230 PLEVDSIQIFAAQRYSFVLDANQAVD-NYWIRA--------------------------- 261
Query: 337 LSPPPITPRWDDYDHSKSFSNKIFALMGSP--KPPTNFHRRLTLLNTQNTINGFTKWAIN 394
P + + ++ I G+P +P TN + T + N ++
Sbjct: 262 ------NPNFGNVGFDGGINSAILRYDGAPAVEPTTN---QTTSVKPLNEVDLHPL---- 308
Query: 395 NVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPV------------NANTT 442
VS +P +P G + + AF+ NG NF PP A
Sbjct: 309 -VSTPVPGSPSSGGVDKAINMAFNFNG--SNFFINGASFVPPTVPVLLQILSGAQTAQDL 365
Query: 443 LGSG-VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXX 501
L SG VY+L N ++++ A +HLHGH F V+ D
Sbjct: 366 LPSGSVYVLPSNASIEISFPATAAAPGAPHP---FHLHGHTFAVVRSAGSTVYNYDNPIF 422
Query: 502 XXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA 551
A +RF +NPG W HCHI+ H G VV+A
Sbjct: 423 RDVVSTGTPAA----GDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMA 468
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 145/530 (27%), Positives = 206/530 (38%), Gaps = 99/530 (18%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +NG PGP + GD + LTN + IHWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A I+QCPI+PG ++LY F+V D+AGT++YH HL Q GL G +V D D
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHAS 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + ++ L+DW+H + R+ G LING+G+ A S
Sbjct: 136 RYDVDNDDTVITLADWYHTAAKLGP--------RFPGGADATLINGKGRAPSDSVAELS- 186
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
++ V K YR R+ + H + ++E D Q
Sbjct: 187 -----------------VIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQ 229
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIP 336
P EVD + I++ + YS +L NQ NYWI A
Sbjct: 230 PLEVDSIQIFAAQRYSFVLDANQAVD-NYWIRA--------------------------- 261
Query: 337 LSPPPITPRWDDYDHSKSFSNKIFALMGSP--KPPTNFHRRLTLLNTQNTINGFTKWAIN 394
P + + ++ I G+P +P TN + T + N ++
Sbjct: 262 ------NPNFGNVGFDGGINSAILRYDGAPAVEPTTN---QTTSVKPLNEVDLHPL---- 308
Query: 395 NVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPV------------NANTT 442
VS +P P G + + AF+ NG NF PP A
Sbjct: 309 -VSTPVPGAPSSGGVDKAINMAFNFNG--SNFFINGASFVPPTVPVLLQILSGAQTAQDL 365
Query: 443 LGSG-VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXX 501
L SG VY+L N ++++ A +HLHGH F V+ D
Sbjct: 366 LPSGSVYVLPSNASIEISFPATAAAPGAPHP---FHLHGHTFAVVRSAGSTVYNYDNPIF 422
Query: 502 XXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA 551
A +RF +NPG W HCHI+ H G VV+A
Sbjct: 423 RDVVSTGTPAA----GDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMA 468
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 153/550 (27%), Positives = 204/550 (37%), Gaps = 123/550 (22%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +NG PGP I GD + LTN + IHWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A I+QCPI+ G ++LY F+V D+AGT++YH HL Q GL G +V D D +
Sbjct: 76 ADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAAD 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + ++ L DW+H V P +G T LING+G+ + A S
Sbjct: 136 LYDVDNDDTVITLVDWYH-------VAAKLGPAFPLGADAT-LINGKGRSPSTTTADLS- 186
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
++ V P K YR R+ + H M ++E D
Sbjct: 187 -----------------VISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTA 229
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA---------------------GVRGRK 315
P VD + I++ + YS +L NQ NYWI A G +
Sbjct: 230 PLVVDSIQIFAAQRYSFVLEANQAVD-NYWIRANPNFGNVGFTGGINSAILRYDGAAAVE 288
Query: 316 PATPPA-----LTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPT 370
P T L +N HP A+ +P SP + G
Sbjct: 289 PTTTQTTSTAPLNEVNLHPLVATAVPGSP----------------------VAGGVD--- 323
Query: 371 NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEY 430
+N NG T + IN S T P P L I G +
Sbjct: 324 ------LAINMAFNFNG-TNFFINGASFTPPTVPVLLQIISGAQ---------------- 360
Query: 431 DVMKPPVNANTTLGSG-VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRG 489
NA L SG VY L N +++ A +HLHGH F V+
Sbjct: 361 -------NAQDLLPSGSVYSLPSNADIEISFPATAAAPGAPHP---FHLHGHAFAVVRSA 410
Query: 490 EGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 549
D A +RF DNPG W HCHI+ H G VV
Sbjct: 411 GSTVYNYDNPIFRDVVSTGTPAA----GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVV 466
Query: 550 LALGVETVGN 559
A + V +
Sbjct: 467 FAEDIPDVAS 476
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 114 GETYLYRFKVDKAGTYFYHGHLGMQRSAG---LYGSLIVDVADGEKEP 158
G+ RF+ D G +F H H+ AG ++ I DVA P
Sbjct: 434 GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVASANPVP 481
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 142/537 (26%), Positives = 211/537 (39%), Gaps = 101/537 (18%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +NG PGP + GD + LTN + +HWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A I+QCPI+PG ++LY F+V ++AGT++YH HL Q GL G +V D D
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHAS 135
Query: 158 PFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + ++ L+DW+H + R+ LING+G+ +A S
Sbjct: 136 RYDVDNDDTVITLADWYHTAAKLGP--------RFPAGADATLINGKGRAPSDTSAELS- 186
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
++ V K R R+ + H + ++E D + Q
Sbjct: 187 -----------------VIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQ 229
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIP 336
P VD + I++ + YS +L NQ NYWI A
Sbjct: 230 PLSVDSIQIFAAQRYSFVLNANQAVD-NYWIRA--------------------------- 261
Query: 337 LSPPPITPRWDDYDHSKSFSNKIFALMGSP--KPPTNFHRRLTLLNTQNTINGFTKWAIN 394
P + + + ++ I G+P +P TN + T + N +N
Sbjct: 262 ------NPNFGNVGFNGGINSAILRYDGAPAVEPTTN---QTTSVKPLNEVNLHPL---- 308
Query: 395 NVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNT 454
VS +P +P G + + AF+ NG F N + P V + SG T
Sbjct: 309 -VSTPVPGSPSSGGVDKAINMAFNFNG-SNFFINGASFVPPSVPVLLQILSGA-----QT 361
Query: 455 TVDVILQNANAIRPNLSEIH--------------PWHLHGHDFWVLGRGEGKFTKEDEXX 500
D++ + + P+ + I P+HLHGH F V+ R G
Sbjct: 362 AQDLLPSGSVXVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVV-RSAGSTVYNYSNP 420
Query: 501 XXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETV 557
A +RF+ +NPG W HCHI+ H G VV A V V
Sbjct: 421 IFRDVVSTGTPAA---GDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAVVQAEDVPDV 474
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 138/533 (25%), Positives = 212/533 (39%), Gaps = 99/533 (18%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYT----EGVVIHWHGIRQLGTPWADGT 103
++++V +NG PGP I GD + + N L + +HWHG Q GT WADG
Sbjct: 22 RDAVV--VNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADGP 79
Query: 104 ASISQCPINPGETYLYRFKVD-KAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHY 161
A ++QCPI G ++LY F +AGT++YH HL Q G G +V D D +
Sbjct: 80 AFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPNDPSANLYDV 139
Query: 162 DGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAE 220
D ++ L+DW+H + ++P G LING+G+ S +A +
Sbjct: 140 DNLNTVITLTDWYHTAAQNGP----AKP----GGADATLINGQGRGPSSPSADLA----- 186
Query: 221 QCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQPFEV 280
++ V K YR R+ + H+M +++ D VQP V
Sbjct: 187 -------------VISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVV 233
Query: 281 DDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPP 340
+ IY+ + YS +L NQ + NYWI A
Sbjct: 234 LKIQIYAAQRYSFILNANQAVN-NYWIRA------------------------------- 261
Query: 341 PITPRWDDYDHSKSFSNKIFALMGSP--KPPTNFHRRLTLLNTQNTINGFTKWAINNVSL 398
P + + ++ I G+ +P T+ + L+ Q ++ T A+
Sbjct: 262 --NPNQGNVGFTNGINSAILRYSGAAATQPTTSQTSSVQPLD-QTNLHPLTATAV----- 313
Query: 399 TLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPV-----------NANTTLGSG- 446
P +P G + + AF+ NG +F + + P V +A L SG
Sbjct: 314 --PGSPVAGGVNLAINQAFNFNG-TNHFVDGASFVPPTVPVLSQIVSGAQSAADLLASGL 370
Query: 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXX 506
VY L + +++ +A HP+HLHGH F V+ R G T
Sbjct: 371 VYSLPSDANIEISFPATSAAA---GGPHPFHLHGHAFAVV-RSAGSTTYNYNDPIFRDTV 426
Query: 507 XXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGN 559
A +RF +NPG W HCHI+ H G VV A + V +
Sbjct: 427 STGTPAA---NDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVFAQDIPDVAS 476
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 143/505 (28%), Positives = 194/505 (38%), Gaps = 99/505 (19%)
Query: 75 ELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHG 133
+LT+ IHWHG Q GT DG A ++QCPI P E+++Y F V +AGTY+YH
Sbjct: 72 QLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHS 131
Query: 134 HLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRW 191
HL Q GL G+ +V D D + D ++ ++DW+H L P +
Sbjct: 132 HLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYH----SLSTVLFPNPNKA 187
Query: 192 IGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXX 251
P T LING G+ + +N SA Q ++ VQ K YR RI
Sbjct: 188 PPAPDTTLINGLGR-------NSANPSAGQLA----------VVSVQSGKRYRFRIVSTS 230
Query: 252 XXXXXXXXVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311
+ H+M V+E DG QP VD + I++G+ YSV++ NQ NYWI A
Sbjct: 231 CFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQAVG-NYWIRA-- 287
Query: 312 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSP-KPPT 370
P + ++ IF G+ PT
Sbjct: 288 -------------------------------NPSNGRNGFTGGINSAIFRYQGAAVAEPT 316
Query: 371 NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEY 430
T LN N I A P P G L +N +F+
Sbjct: 317 TSQNSGTALNEANLIPLINPGA--------PGNPVPGGADINLNLRIGRNATTADFTING 368
Query: 431 DVMKPP------------VNANTTL-GSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWH 477
PP N N L G V L N +++ + HP+H
Sbjct: 369 APFIPPTVPVLLQILSGVTNPNDLLPGGAVISLPANQVIEISIPGGGN--------HPFH 420
Query: 478 LHGHDFWVLGR-GEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHC 536
LHGH+F V+ G + + V F RFV DNPG W HC
Sbjct: 421 LHGHNFDVVRTPGSSVYNYVNPVRRDVVSIGGGGDNVTF-------RFVTDNPGPWFLHC 473
Query: 537 HIEPHFHIGMGVVLALGVETVGNIP 561
HI+ H G+ VV A E + NIP
Sbjct: 474 HIDWHLEAGLAVVFA---EDIPNIP 495
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 144/536 (26%), Positives = 208/536 (38%), Gaps = 99/536 (18%)
Query: 44 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPW 99
SPD + +NG PGP + GD + LTN + +HWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNW 75
Query: 100 ADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKE 157
ADG A I+QCPI+PG ++LY F+V ++AGT++YH HL Q GL G +V D D
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHAS 135
Query: 158 PFHYDG-EFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 216
+ D + + L+DW+H + ++G + + + LING+G+ +A S
Sbjct: 136 RYDVDNDDTTITLADWYHTAA---KLGPA-----FPNGADSTLINGKGRAPSDSSAQLS- 186
Query: 217 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQ 276
++ V K R R+ + H ++E D Q
Sbjct: 187 -----------------VVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQ 229
Query: 277 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIP 336
P D + I++ + YS L NQ NYWI A
Sbjct: 230 PLNTDSIQIFAAQRYSFTLNANQAVD-NYWIRA--------------------------- 261
Query: 337 LSPPPITPRWDDYDHSKSFSNKIFALMGSP--KPPTNFHRRLTLLNTQNTINGFTKWAIN 394
P + + + ++ I G+P +P TN LN N ++
Sbjct: 262 ------NPNFGNVGFNGGINSAILRYDGAPAVEPTTNQSTSTQPLNETN-LHPL------ 308
Query: 395 NVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPV------------NANTT 442
VS +P +P G + + AF+ NG NF PP A
Sbjct: 309 -VSTPVPGSPAAGGVDKAINMAFNFNG--SNFFINGASFTPPSVPVLLQILSGAQTAQDL 365
Query: 443 LGSG-VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXX 501
L SG V L N ++++ A HP+HLHGH F V+ R G
Sbjct: 366 LPSGSVXTLPSNASIEISFPATAAAP---GAPHPFHLHGHVFAVV-RSAGSTVYNYSNPI 421
Query: 502 XXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETV 557
A +RF+ +NPG W HCHI+ H G VV A V V
Sbjct: 422 FRDVVSTGTPAA---GDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAVVQAEDVPDV 474
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 141/284 (49%), Gaps = 31/284 (10%)
Query: 31 TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWH 90
TR Y VE +PD M NG PGP I A GD + + +TN L G IHWH
Sbjct: 67 TREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWH 126
Query: 91 GIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVD 150
GIRQLG+ DG ++QCPI PG+T Y+F+V + GT +YH H +Q GL+G LI++
Sbjct: 127 GIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIIN 186
Query: 151 ---VADGEKEPFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTL---LINGR 203
AD YD + ++ L DW H SV E+ ++R +G P L L+NG
Sbjct: 187 GPATAD-------YDEDVGVIFLQDWAHESVF--EIWDTAR----LGAPPALENTLMNGT 233
Query: 204 GQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNH 263
F+CS S + + G ++ ++ V+ K YRLR+ + NH
Sbjct: 234 NTFDCS-------ASTDPNCVGGGKKF--ELTFVEGTK-YRLRLINVGIDSHFEFAIDNH 283
Query: 264 KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWI 307
+ V+ D + P+ D + I G+ Y V++ N + NYWI
Sbjct: 284 TLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANA-AADNYWI 326
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 474 HPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFP-YGWTALRFVADNPGAW 532
HP HLHGHDF+++ + F ++ P G+ A+ F DNPG+W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 533 AFHCHIEPHFHIGMGV 548
HCHI H GM +
Sbjct: 523 LLHCHIAWHASEGMAM 538
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 141/284 (49%), Gaps = 31/284 (10%)
Query: 31 TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWH 90
TR Y VE +PD M NG PGP I A GD + + +TN L G IHWH
Sbjct: 67 TREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWH 126
Query: 91 GIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVD 150
GIRQLG+ DG ++QCPI PG+T Y+F+V + GT +YH H +Q GL+G LI++
Sbjct: 127 GIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIIN 186
Query: 151 ---VADGEKEPFHYDGEFNLL-LSDWWHRSVHEQEVGLSSRPLRWIGEPQTL---LINGR 203
AD YD + ++ L DW H SV E+ ++R +G P L L+NG
Sbjct: 187 GPATAD-------YDEDVGVIFLQDWAHESVF--EIWDTAR----LGAPPALENTLMNGT 233
Query: 204 GQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNH 263
F+CS S + + G ++ ++ V+ K YRLR+ + NH
Sbjct: 234 NTFDCS-------ASTDPNCVGGGKKF--ELTFVEGTK-YRLRLINVGIDSHFEFAIDNH 283
Query: 264 KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWI 307
+ V+ D + P+ D + I G+ Y V++ N + NYWI
Sbjct: 284 TLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANA-AADNYWI 326
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 474 HPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFP-YGWTALRFVADNPGAW 532
HP HLHGHDF+++ + F ++ P G+ A+ F DNPG+W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 533 AFHCHIEPHFHIGMGV 548
HCHI H G+ +
Sbjct: 523 LLHCHIAWHASEGLAM 538
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 145/525 (27%), Positives = 211/525 (40%), Gaps = 88/525 (16%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQ 108
+++VM +N + GPTIRA GD I V + N L T G +HWHG+RQLG + DG +++
Sbjct: 95 KNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTE 154
Query: 109 CPINP-GETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYD-GEFN 166
CPI P G Y+F+ + GT +YH H Q G+ G++ +D P+ D G F
Sbjct: 155 CPIPPKGGRKTYKFRATQYGTSWYHSHFSAQYGNGVVGTIQID--GPASLPYDIDLGVFP 212
Query: 167 LLLSDWWHRSVHEQEVGLSSRPLRWIGEP--QTLLINGRGQFNCSLAAHFSNGSAEQCKL 224
L+ D+++RS E S G P +L NG + + A + N
Sbjct: 213 LM--DYYYRSADELVHFTQSN-----GAPPSDNVLFNGTARHPETGAGQWYN-------- 257
Query: 225 RGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQPFEVDDMD 284
+ + P K +RLRI + H M V+ D V F V +
Sbjct: 258 ----------VTLTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLF 307
Query: 285 IYSGESYSVLLTTNQDPSYNYWISA----GVRGRKPATPPALTLLNYHPTSASKIPLSPP 340
+ G+ Y V + N P NYW + G+ G PA + Y A+ +P
Sbjct: 308 LAVGQRYDVTIDANS-PVGNYWFNVTFGDGLCGSSNNKFPA-AIFRYQGAPAT-LPTDQG 364
Query: 341 PITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTL 400
P +H + + ++ P NF +R NT+ V+L +
Sbjct: 365 LPVP-----NHMCLDNLNLTPVVTRSAPVNNFVKR-----PSNTL---------GVTLDI 405
Query: 401 PPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTT-VDVI 459
TP + NG N ++ ++ NT+ Y + N VD +
Sbjct: 406 GGTPLF---------VWKVNGSAINVDWGKPILDYVMSGNTS-----YPVSDNIVQVDAV 451
Query: 460 LQ------NANAIRPNLSEIHPWHLHGHDFWVLGRGEGK---------FTKEDEXXXXXX 504
Q + P +S HP HLHGHDF VLGR + F +
Sbjct: 452 DQWTYWLIENDPTNPIVSLPHPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKG 511
Query: 505 XXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGV 548
+ P GW L F DNPGAW FHCHI H G+ V
Sbjct: 512 NNPVRRDVTMLPAGGWLLLAFKTDNPGAWLFHCHIAWHVSGGLSV 556
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 210/533 (39%), Gaps = 110/533 (20%)
Query: 52 VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPI 111
VM ING GP I A GDT+ V + N L T G IHWHGI Q T DG +++CPI
Sbjct: 57 VMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPI 116
Query: 112 NP-GETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLL-L 169
P G YR++ + GT +YH H Q G+ G++ ++ YD + + +
Sbjct: 117 PPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQIN----GPASLPYDIDLGVFPI 172
Query: 170 SDWWHRSVHE--QEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGN 227
+D+++R+ + ++ P +LING + ++N
Sbjct: 173 TDYYYRAADDLVHFTQNNAPPFS-----DNVLINGTAVNPNTGEGQYAN----------- 216
Query: 228 EQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQPFEVDDMDIYS 287
+ + P K +RLRI + NH M V+ AD V VD + +
Sbjct: 217 -------VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAV 269
Query: 288 GESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWD 347
G+ Y V++ ++ P NYW + G+ LN HP +
Sbjct: 270 GQRYDVVIDASRAPD-NYWFNVTFGGQAACG----GSLNPHPAA---------------- 308
Query: 348 DYDHSKSFSNKIFALMGSP--------KPPTNFHRRLTLLNTQNT------INGFTKWAI 393
IF G+P PP + H+ L L+ + +N F K
Sbjct: 309 -----------IFHYAGAPGGLPTDEGTPPVD-HQCLDTLDVRPVVPRSVPVNSFVKRPD 356
Query: 394 NN--VSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLG 451
N V+L L TP + NG N D KP ++ T G+ Y +
Sbjct: 357 NTLPVALDLTGTPLF---------VWKVNGSDINV----DWGKPIIDYILT-GNTSYPVS 402
Query: 452 LNTT-VDVILQNANAIRPN-----LSEIHPWHLHGHDFWVLGR-------GEGKFTKE-- 496
N VD + Q + N S HP HLHGHDF VLGR + +F +
Sbjct: 403 DNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPA 462
Query: 497 -DEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 548
D T ++ GW L F DNPGAW FHCHI H G+ V
Sbjct: 463 VDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSV 515
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 210/533 (39%), Gaps = 110/533 (20%)
Query: 52 VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPI 111
VM ING GP I A GDT+ V + N L T G IHWHGI Q T DG +++CPI
Sbjct: 57 VMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPI 116
Query: 112 NP-GETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLL-L 169
P G YR++ + GT +YH H Q G+ G++ ++ YD + + +
Sbjct: 117 PPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQIN----GPASLPYDIDLGVFPI 172
Query: 170 SDWWHRSVHE--QEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGN 227
+D+++R+ + ++ P +LING + ++N
Sbjct: 173 TDYYYRAADDLVHFTQNNAPPFS-----DNVLINGTAVNPNTGEGQYAN----------- 216
Query: 228 EQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQPFEVDDMDIYS 287
+ + P K +RLRI + NH M V+ AD V VD + +
Sbjct: 217 -------VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAV 269
Query: 288 GESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWD 347
G+ Y V++ ++ P NYW + G+ LN HP +
Sbjct: 270 GQRYDVVIDASRAPD-NYWFNVTFGGQAACG----GSLNPHPAA---------------- 308
Query: 348 DYDHSKSFSNKIFALMGSP--------KPPTNFHRRLTLLNTQNT------INGFTKWAI 393
IF G+P PP + H+ L L+ + +N F K
Sbjct: 309 -----------IFHYAGAPGGLPTDEGTPPVD-HQCLDTLDVRPVVPRSVPVNSFVKRPD 356
Query: 394 NN--VSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLG 451
N V+L L TP + NG N D KP ++ T G+ Y +
Sbjct: 357 NTLPVALDLTGTPLF---------VWKVNGSDINV----DWGKPIIDYILT-GNTSYPVS 402
Query: 452 LNTT-VDVILQNANAIRPN-----LSEIHPWHLHGHDFWVLGR-------GEGKFTKE-- 496
N VD + Q + N S HP HLHGHDF VLGR + +F +
Sbjct: 403 DNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPA 462
Query: 497 -DEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 548
D T ++ GW L F DNPGAW FHCHI H G+ V
Sbjct: 463 VDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSV 515
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 210/533 (39%), Gaps = 110/533 (20%)
Query: 52 VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPI 111
VM ING GP I A GDT+ V + N L T G IHWHGI Q T DG +++CPI
Sbjct: 57 VMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPI 116
Query: 112 NP-GETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLL-L 169
P G YR++ + GT +YH H Q G+ G++ ++ YD + + +
Sbjct: 117 PPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQIN----GPASLPYDIDLGVFPI 172
Query: 170 SDWWHRSVHE--QEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGN 227
+D+++R+ + ++ P +LING + ++N
Sbjct: 173 TDYYYRAADDLVHFTQNNAPPFS-----DNVLINGTAVNPNTGEGQYAN----------- 216
Query: 228 EQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYVQPFEVDDMDIYS 287
+ + P K +RLRI + NH M V+ AD V VD + +
Sbjct: 217 -------VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAV 269
Query: 288 GESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWD 347
G+ Y V++ ++ P NYW + G+ LN HP +
Sbjct: 270 GQRYDVVIDASRAPD-NYWFNVTFGGQAACG----GSLNPHPAA---------------- 308
Query: 348 DYDHSKSFSNKIFALMGSP--------KPPTNFHRRLTLLNTQNT------INGFTKWAI 393
IF G+P PP + H+ L L+ + +N F K
Sbjct: 309 -----------IFHYAGAPGGLPTDEGTPPVD-HQCLDTLDVRPVVPRSVPVNSFVKRPD 356
Query: 394 NN--VSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLG 451
N V+L L TP + NG N D KP ++ T G+ Y +
Sbjct: 357 NTLPVALDLTGTPLF---------VWKVNGSDINV----DWGKPIIDYILT-GNTSYPVS 402
Query: 452 LNTT-VDVILQNANAIRPN-----LSEIHPWHLHGHDFWVLGR-------GEGKFTKE-- 496
N VD + Q + N S HP HLHGHDF VLGR + +F +
Sbjct: 403 DNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPA 462
Query: 497 -DEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 548
D T ++ GW L F DNPGAW FHCHI H G+ V
Sbjct: 463 VDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSV 515
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 53 MGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPIN 112
NGQ P P I GD + V +TN + T IHWHG+ Q GT +DG +Q I
Sbjct: 25 FAFNGQVPAPLIHVMEGDDVTVNVTN-MTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIE 83
Query: 113 PGETYLYRFKVDKAGTYFYHGHLGMQRSA---GLYGSLIVDVADGEKEPFHYDGEFNLLL 169
PG+T+ Y+FK + AGT +YH H+ + G++G LIV+ + ++ L+L
Sbjct: 84 PGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIEKTVTKDYILML 143
Query: 170 SDW 172
SDW
Sbjct: 144 SDW 146
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 44/260 (16%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
+ + ++ G FPGPT+R R DT+ + L N+L E +HWHG+ +P D
Sbjct: 33 QRATLLTYGGSFPGPTLRVRPRDTVRLTLENRL-PEPTNLHWHGLPI--SPKVDDPF--- 86
Query: 108 QCPINPGETYLYRFKVDK--AGTYFYHGHL----GMQRSAGLYGSLIVDVADGEKEPFHY 161
I PGE++ Y F V K AGT++YH HL Q AGL G+L+V+ +
Sbjct: 87 -LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIPELRE 145
Query: 162 DGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQ 221
E L+L D + P+ W+ + L+ G +L A
Sbjct: 146 AEEHLLVLKDLALQGGRPA----PHTPMDWMNGKEGDLVLVNGALRPTLVAQ-------- 193
Query: 222 CKLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHKMVVVEADGNYV-QPFEV 280
T RLR+ +++H + ++ ADG ++ +P EV
Sbjct: 194 ------------------KATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEV 235
Query: 281 DDMDIYSGESYSVLLTTNQD 300
++ + GE VL+ ++
Sbjct: 236 SELLLAPGERAEVLVRLRKE 255
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 56 NGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGE 115
NG+ PGPT+ AR GD + + TN IH+HG+ + DGT I I PG+
Sbjct: 60 NGRIPGPTLWAREGDALRIHFTNAG-AHPHTIHFHGVHRATM---DGTPGIGAGSIAPGQ 115
Query: 116 TYLYRFKVDKAGTYFYHGH---LGMQRSAGLYGSLIVDVADGE 155
++ Y F GT+ YH H L + GLYG IV+ +G
Sbjct: 116 SFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGR 158
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K+++ NG P P I GD + + + NKL E IHWHG+ P DG+
Sbjct: 68 KKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKL-KEATTIHWHGVPV--PPDQDGSP--- 121
Query: 108 QCPINPGETYLYRFKV--DKAGTYFYHGH----LGMQRSAGLYGSLIVDVADGEKEPFHY 161
PI GE +YRF++ D AGTY+YH H Q GL G+ ++ +K+ +
Sbjct: 122 HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVI---KAKKDALSH 178
Query: 162 DGEFNLLLSD 171
E +L++SD
Sbjct: 179 LKEKDLMISD 188
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 474 HPWHLHGHDFWVLG-RGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAW 532
HP+H+HG F ++ + GK K + T + P LR D G
Sbjct: 407 HPFHIHGTQFELISSKLNGKVQKAE-------FRALRDTINVRPNEELRLRMKQDFKGLR 459
Query: 533 AFHCHIEPHFHIGM 546
+HCHI H +GM
Sbjct: 460 MYHCHILEHEDLGM 473
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADG----EKEPFHYD-----GEFNLLL 169
+GL G+L+V DG E +P HYD GEF+L +
Sbjct: 140 VVSGLSGTLMVLPRDGLKDPEGKPLHYDRAYTIGEFDLYI 179
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 25 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 84
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 85 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 138
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+GL G+L+V DG K+ P HYD GEF+L +
Sbjct: 139 VVSGLSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 178
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPHH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVEFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVNFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHAAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHSVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHSVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 27 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 86
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 87 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 140
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 141 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 180
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHSVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 28 GSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYTEGV 85
G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 29 GPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA-- 86
Query: 86 VIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSA 141
H + G A G A ++ +NPGE RFK D++GT+ YH G + +
Sbjct: 87 --MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 142 GLYGSLIVDVADG----EKEPFHYD-----GEFNLLL 169
GL G+L+V DG E +P HYD GEF+L +
Sbjct: 143 GLSGTLMVLPRDGLKDPEGKPLHYDRAYTIGEFDLYI 179
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 32 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 91
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 92 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 145
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 146 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 185
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T+ G K + +E D + + M NG PGPT+ GD + + L N
Sbjct: 26 TASGPKVTEFTMTIEEKKMVIDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPSGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPAGAPLHYDRAYTIGEFDLYI 179
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGASGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ YH G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADG----EKEPFHYD-----GEFNLLL 169
+G G+L+V DG E +P HYD GEF+L +
Sbjct: 140 VVSGQSGTLMVLPRDGLKDPEGKPLHYDRAYTIGEFDLYI 179
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 28 GSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYTEGV 85
G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 29 GPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNA-- 86
Query: 86 VIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSA 141
H + G A G A ++ +NPGE RFK D++GT+ YH G + +
Sbjct: 87 --MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142
Query: 142 GLYGSLIVDVADG----EKEPFHYD-----GEFNLLL 169
G G+L+V DG E +P HYD GEF+L +
Sbjct: 143 GQSGTLMVLPRDGLKDPEGKPLHYDRAYTIGEFDLYI 179
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 26 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATN 85
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFY----HGHLGMQ 138
H + G A G A ++ +NPGE RFK D++GT+ Y G +
Sbjct: 86 A----MPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYVCAPEGMVPWH 139
Query: 139 RSAGLYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+G+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 140 VVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 179
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 25 TSYGSKTRHYKWEVEYMFWSPDCKESIV--MGINGQFPGPTIRARAGDTIAVELTNKLYT 82
T G K + +E D K + + M NG PGPT+ GD + + L N
Sbjct: 27 TKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVN---- 82
Query: 83 EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAG 142
H + G A G A ++ +NPGE RFK D++GT+ YH
Sbjct: 83 PATNAMPHNVDFHGATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYH----CTPHPF 136
Query: 143 LYGSLIVDVADGEKE----PFHYD-----GEFNLLL 169
+ G+L+V DG K+ P HYD GEF+L +
Sbjct: 137 MSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYI 172
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K + G NG GP ++ + G + V++ N+L TE +HWHG+ G DG
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE--VDGG---P 87
Query: 108 QCPINPGETYLYRFKVDK--AGTYFY---HGHLGMQRSAGLYGSLIVDVADGEKEPFHYD 162
Q I PG VD+ A +F+ HG G Q + GL G ++++ D
Sbjct: 88 QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE----------DD 137
Query: 163 GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQC 222
L+L W G+ P+ Q + GQ + L +
Sbjct: 138 EILKLMLPKQW---------GIDDVPVIV----QDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 223 KLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHK-MVVVEADGNYV-QPFEV 280
L N PQ H P RLR+ +++ + V+ +DG + +P +V
Sbjct: 185 TLLTNGAIYPQ--HAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKV 242
Query: 281 DDMDIYSGESYSVLLTTNQDPSYN 304
++ + GE + VL+ N + ++
Sbjct: 243 SELPVLMGERFEVLVEVNDNKPFD 266
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K + G NG GP ++ + G + V++ N+L TE +HWHG+ G DG
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE--VDGG---P 87
Query: 108 QCPINPGETYLYRFKVDK--AGTYFY---HGHLGMQRSAGLYGSLIVDVADGEKEPFHYD 162
Q I PG VD+ A +F+ HG G Q + GL G ++++ D
Sbjct: 88 QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE----------DD 137
Query: 163 GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQC 222
L+L W G+ P+ Q + GQ + L +
Sbjct: 138 EILKLMLPKQW---------GIDDVPVIV----QDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 223 KLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHK-MVVVEADGNYV-QPFEV 280
L N PQ H P RLR+ +++ + V+ +DG + +P +V
Sbjct: 185 TLLTNGAIYPQ--HAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKV 242
Query: 281 DDMDIYSGESYSVLLTTNQDPSYN 304
++ + GE + VL+ N + ++
Sbjct: 243 SELPVLMGERFEVLVEVNDNKPFD 266
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K + G NG GP ++ + G + V++ N+L TE +HWHG+ G DG
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE--VDGG---P 87
Query: 108 QCPINPGETYLYRFKVDK--AGTYFY---HGHLGMQRSAGLYGSLIVDVADGEKEPFHYD 162
Q I PG VD+ A +F+ HG G Q + GL G ++++ D
Sbjct: 88 QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE----------DD 137
Query: 163 GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQC 222
L+L W G+ P+ Q + GQ + L +
Sbjct: 138 EILKLMLPKQW---------GIDDVPVIV----QDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 223 KLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHK-MVVVEADGNYV-QPFEV 280
L N PQ H P RLR+ +++ + V+ +DG + +P +V
Sbjct: 185 TLLTNGAIYPQ--HAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKV 242
Query: 281 DDMDIYSGESYSVLLTTNQDPSYN 304
++ + GE + VL+ N + ++
Sbjct: 243 SELPVLMGERFEVLVEVNDNKPFD 266
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K + G NG GP ++ + G + V++ N+L TE +HWHG+ G DG
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE--VDGG---P 87
Query: 108 QCPINPGETYLYRFKVDK--AGTYFY---HGHLGMQRSAGLYGSLIVDVADGEKEPFHYD 162
Q I PG VD+ A +F+ HG G Q + GL G ++++ D
Sbjct: 88 QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE----------DD 137
Query: 163 GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQC 222
L+L W G+ P+ Q + GQ + L +
Sbjct: 138 EILKLMLPKQW---------GIDDVPVIV----QDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 223 KLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHK-MVVVEADGNYV-QPFEV 280
L N PQ H P RLR+ +++ + V+ +DG + +P +V
Sbjct: 185 TLLTNGAIYPQ--HAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKV 242
Query: 281 DDMDIYSGESYSVLLTTNQDPSYN 304
++ + GE + VL+ N + ++
Sbjct: 243 SELPVLMGERFEVLVEVNDNKPFD 266
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K + G NG GP ++ + G + V++ N+L TE +HWHG+ G DG
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE--VDGG---P 87
Query: 108 QCPINPGETYLYRFKVDK--AGTYFY---HGHLGMQRSAGLYGSLIVDVADGEKEPFHYD 162
Q I PG VD+ A +F+ HG G Q + GL G ++++ D
Sbjct: 88 QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE----------DD 137
Query: 163 GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQC 222
L+L W G+ P+ Q + GQ + L +
Sbjct: 138 EILKLMLPKQW---------GIDDVPVIV----QDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 223 KLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHK-MVVVEADGNYV-QPFEV 280
L N PQ H P RLR+ +++ + V+ +DG + +P +V
Sbjct: 185 TLLTNGAIYPQ--HAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKV 242
Query: 281 DDMDIYSGESYSVLLTTNQDPSYN 304
++ + GE + VL+ N + ++
Sbjct: 243 SELPVLMGERFEVLVEVNDNKPFD 266
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K + G NG GP ++ + G + V++ N+L TE +HWHG+ G DG
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE--VDGG---P 87
Query: 108 QCPINPGETYLYRFKVDK--AGTYFY---HGHLGMQRSAGLYGSLIVDVADGEKEPFHYD 162
Q I PG VD+ A +F+ HG G Q + GL G ++++ D
Sbjct: 88 QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE----------DD 137
Query: 163 GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQC 222
L+L W G+ P+ Q + GQ + L +
Sbjct: 138 EILKLMLPKQW---------GIDDVPVIV----QDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 223 KLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHK-MVVVEADGNYV-QPFEV 280
L N PQ H P RLR+ +++ + V+ +DG + +P +V
Sbjct: 185 TLLTNGAIYPQ--HAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKV 242
Query: 281 DDMDIYSGESYSVLLTTNQDPSYN 304
++ + GE + VL+ N + ++
Sbjct: 243 SELPVLMGERFEVLVEVNDNKPFD 266
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K + G NG GP ++ + G + V++ N+L TE +HWHG+ G DG
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE--VDGG---P 87
Query: 108 QCPINPGETYLYRFKVDK--AGTYFY---HGHLGMQRSAGLYGSLIVDVADGEKEPFHYD 162
Q I PG VD+ A +F+ HG G Q + GL G ++++ D
Sbjct: 88 QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE----------DD 137
Query: 163 GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQC 222
L+L W G+ P+ Q + GQ + L +
Sbjct: 138 EILKLMLPKQW---------GIDDVPVIV----QDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 223 KLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHK-MVVVEADGNYV-QPFEV 280
L N PQ H P RLR+ +++ + V+ +DG + +P +V
Sbjct: 185 TLLTNGAIYPQ--HAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKV 242
Query: 281 DDMDIYSGESYSVLLTTNQDPSYN 304
++ + GE + VL+ N + ++
Sbjct: 243 SELPVLMGERFEVLVEVNDNKPFD 266
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)
Query: 48 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASIS 107
K + G NG GP ++ + G + V++ N+L TE +HWHG+ G DG
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE--VDGG---P 87
Query: 108 QCPINPGETYLYRFKVDK--AGTYFY---HGHLGMQRSAGLYGSLIVDVADGEKEPFHYD 162
Q I PG VD+ A +F+ HG G Q + GL G ++++ D
Sbjct: 88 QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIE----------DD 137
Query: 163 GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQC 222
L+L W G+ P+ Q + GQ + L +
Sbjct: 138 EILKLMLPKQW---------GIDDVPVIV----QDKKFSADGQIDYQLDVMTAAVGWFGD 184
Query: 223 KLRGNEQCAPQILHVQPNKTYRLRIXXXXXXXXXXXXVKNHK-MVVVEADGNYV-QPFEV 280
L N PQ H P RLR+ +++ + V+ +DG + +P +V
Sbjct: 185 TLLTNGAIYPQ--HAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKV 242
Query: 281 DDMDIYSGESYSVLLTTNQDPSYN 304
++ + GE + VL+ N + ++
Sbjct: 243 SELPVLMGERFEVLVEVNDNKPFD 266
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPW-ADGTASISQCPINPGETYLYR 120
PTI R G + + L NKL TE ++HWHG W D S + I PGE+Y Y
Sbjct: 38 PTIILRRGQRVDMTLKNKL-TEPTIVHWHG---FDVNWHNDAHPSFA---ITPGESYNYS 90
Query: 121 FKV-DKAGTYFYHGH----LGMQRSAGLYGSLIVDVADGEKEPFHYD-GEFNLLLSD 171
F V ++AGTY YH H Q G G +IV+ G F Y + L++SD
Sbjct: 91 FDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVE-DSGSDLGFKYGVNDLPLVISD 146
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 29 SKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIH 88
KT VEY +W+ D G PG IR R GDT+ VE +N V H
Sbjct: 47 EKTMKMDDGVEYRYWTFD----------GDVPGRMIRVREGDTVEVEFSNN--PSSTVPH 94
Query: 89 WHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH---GHLGMQRSAGLYG 145
A+ + PG T + FK + G Y YH +GM + G+YG
Sbjct: 95 NVDFHAATGQGGGAAATFTA----PGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYG 150
Query: 146 SLIVDVADGEKEPFHYDGEFNLLLSDWWHR 175
++V+ +G + D EF ++ D++ +
Sbjct: 151 LILVEPKEGLPK---VDKEFYIVQGDFYTK 177
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 38 VEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGT 97
VEY+FWS E++ PG IR R GD I L+N + + H + +
Sbjct: 46 VEYVFWS--FGETV--------PGSFIRVREGDEIEFNLSN--HPSSKMPHNIDLHAVTG 93
Query: 98 PWADGTASISQCPINPGETYLYRFKVDKAGTYFYH---GHLGMQRSAGLYGSLIVDVADG 154
P +S + PG T + FK G Y YH +GM + G+YG ++V+ +G
Sbjct: 94 PGGGAESSFTA----PGHTSTFNFKALNPGLYIYHCATAPVGMHIANGMYGLILVEPKEG 149
Query: 155 EKEPFHYDGEFNLLLSDWWHR 175
D E+ L+ D++ +
Sbjct: 150 LAP---VDREYYLVQGDFYTK 167
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
Of Various Metal Cation Binding Sites
Length = 1065
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 59 FPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGI----RQLGTPWADGTASISQC--PIN 112
F GP I+A GD + V L N L + H HGI G + D T + +
Sbjct: 92 FLGPIIKAETGDKVYVHLKN-LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVY 150
Query: 113 PGETYLYRFKVDKAG----------TYFYHGHLGMQR--SAGLYGSLIV---DVADGEKE 157
PGE Y Y + T YH H+ + ++GL G LI+ D D EKE
Sbjct: 151 PGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKE 210
Query: 158 PFHYDGEFNLLLS 170
H D EF ++ S
Sbjct: 211 K-HIDREFVVMFS 222
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 16/78 (20%)
Query: 469 NLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADN 528
N ++H H HGH F RG IFP + L
Sbjct: 989 NEIDLHTVHFHGHSFQYKHRG----------------VYSSDVFDIFPGTYQTLEMFPRT 1032
Query: 529 PGAWAFHCHIEPHFHIGM 546
PG W HCH+ H H GM
Sbjct: 1033 PGIWLLHCHVTDHIHAGM 1050
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 59 FPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGI----RQLGTPWADGTASISQC--PIN 112
F GP I+A GD + V L N L + H HGI G + D T + +
Sbjct: 73 FLGPIIKAETGDKVYVHLKN-LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVY 131
Query: 113 PGETYLYRFKVDKAG----------TYFYHGHLGMQR--SAGLYGSLIV---DVADGEKE 157
PGE Y Y + T YH H+ + ++GL G LI+ D D EKE
Sbjct: 132 PGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKE 191
Query: 158 PFHYDGEFNLLLS 170
H D EF ++ S
Sbjct: 192 K-HIDREFVVMFS 203
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 16/78 (20%)
Query: 469 NLSEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADN 528
N ++H H HGH F RG IFP + L
Sbjct: 970 NEIDLHTVHFHGHSFQYKHRG----------------VYSSDVFDIFPGTYQTLEMFPRT 1013
Query: 529 PGAWAFHCHIEPHFHIGM 546
PG W HCH+ H H GM
Sbjct: 1014 PGIWLLHCHVTDHIHAGM 1031
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 16/180 (8%)
Query: 4 GLRHVAVVVTCWILMLCSVFETSYGSKTRHYKWEVE--YMFWSPDCKESIVMGINGQFPG 61
GL VAV + L+ + K ++ +E M D + M NG PG
Sbjct: 1 GLPRVAVDLVAPPLVHPHSQVAAGAPKVVQFRMSIEEKKMVADDDGTTAQAMTFNGSVPG 60
Query: 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRF 121
PT+ GD I + L N H + A G A ++Q + PG+ + RF
Sbjct: 61 PTLVVHEGDYIELTLVNPATNS----MPHNVDFHAATGALGGAGLTQ--VVPGQEAVLRF 114
Query: 122 KVDKAGTYFYH----GHLGMQRSAGLYGSLIVDVADGEKE----PFHYDGEFNLLLSDWW 173
K D++GT+ YH G + +G+ G+L+V DG ++ YD + + SD +
Sbjct: 115 KADRSGTFVYHCAPAGMVPWHVVSGMNGALMVLPRDGLRDAAGAALAYDRVYTIGESDLY 174
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 23/109 (21%)
Query: 60 PGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLY 119
PGP I GDT+ +E TN + +H HG+ + +DGTA +++ + PG T Y
Sbjct: 37 PGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDAEIS--SDGTA-MNKSDVEPGGTRTY 92
Query: 120 RFKVDK-------------AGTYFYHGH-LGMQRSA-----GLYGSLIV 149
++ K AG + YH H +G + GLYG +IV
Sbjct: 93 TWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 141
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 45 PDCKESIV---MGINGQFP--GPTIRARAGDTIA-VELTNKLYTEGVVIHWHGIRQLGTP 98
PD +IV M IN + P GP A GD + V +T+ Y H HG R
Sbjct: 149 PDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYH--TFHMHGHR----- 201
Query: 99 WADGTASISQCPINP---------GETYLYRFKVDK-----AGTYFYHGHLGMQRSAGLY 144
WAD I P +P G + F++ AG + YH H+ G+
Sbjct: 202 WADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMV 261
Query: 145 GSLIVDVADG 154
G +V DG
Sbjct: 262 GLFLVKKPDG 271
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 474 HPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWA 533
H +H+HGH W R G T D+ T +G+ + GAW
Sbjct: 193 HTFHMHGHR-WADNR-TGILTGPDDPSRVIDNKI---TGPADSFGFQIIAGEGVGAGAWM 247
Query: 534 FHCHIEPHFHIGMGVVLALGVETVGNIP 561
+HCH++ H +GM V L L + G IP
Sbjct: 248 YHCHVQSHSDMGM-VGLFLVKKPDGTIP 274
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 23/109 (21%)
Query: 60 PGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLY 119
PGP I GDT+ +E TN + +H HG+ + +DGTA +++ + PG T Y
Sbjct: 34 PGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTY 89
Query: 120 RFKVDK-------------AGTYFYHGH-LGMQRSA-----GLYGSLIV 149
++ K AG + YH H +G + GLYG +IV
Sbjct: 90 TWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 138
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 45 PDCKESIV---MGINGQFP--GPTIRARAGDTIA-VELTNKLYTEGVVIHWHGIRQLGTP 98
PD +IV M IN + P GP A GD + V +T+ Y H HG R
Sbjct: 146 PDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYH--TFHMHGHR----- 198
Query: 99 WADGTASISQCPINP---------GETYLYRFKVDK-----AGTYFYHGHLGMQRSAGLY 144
WAD I P +P G + F++ AG + YH H+ G+
Sbjct: 199 WADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMV 258
Query: 145 GSLIVDVADG 154
G +V DG
Sbjct: 259 GLFLVKKPDG 268
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 474 HPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWA 533
H +H+HGH W R G T D+ T +G+ + GAW
Sbjct: 190 HTFHMHGHR-WADNR-TGILTGPDDPSRVIDNKI---TGPADSFGFQIIAGEGVGAGAWM 244
Query: 534 FHCHIEPHFHIGMGVVLALGVETVGNIP 561
+HCH++ H +GM V L L + G IP
Sbjct: 245 YHCHVQSHSDMGM-VGLFLVKKPDGTIP 271
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 23/111 (20%)
Query: 58 QFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETY 117
PGP I GDT+ +E TN + +H HG+ + +DGTA +++ + PG T
Sbjct: 73 SVPGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTR 128
Query: 118 LYRFKVDK-------------AGTYFYHGH-LGMQRSA-----GLYGSLIV 149
Y ++ K AG + YH H +G + GLYG +IV
Sbjct: 129 TYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 179
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 45 PDCKESIV---MGINGQFP--GPTIRARAGDTIA-VELTNKLYTEGVVIHWHGIRQLGTP 98
PD +IV M IN + P GP A GD + V +T+ Y H HG R
Sbjct: 187 PDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYH--TFHMHGHR----- 239
Query: 99 WADGTASISQCPINP---------GETYLYRFKVDK-----AGTYFYHGHLGMQRSAGLY 144
WAD I P +P G + F++ AG + YH H+ G+
Sbjct: 240 WADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMV 299
Query: 145 GSLIVDVADG 154
G +V DG
Sbjct: 300 GLFLVKKPDG 309
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 474 HPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWA 533
H +H+HGH W R G T D+ T +G+ + GAW
Sbjct: 231 HTFHMHGHR-WADNR-TGILTGPDDPSRVIDNKI---TGPADSFGFQIIAGEGVGAGAWM 285
Query: 534 FHCHIEPHFHIGMGVVLALGVETVGNIPN 562
+HCH++ H +GM V L L + G IP
Sbjct: 286 YHCHVQSHSDMGM-VGLFLVKKPDGTIPG 313
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 56 NGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGE 115
NG+ PGP +R R GDT+ + L N + + +++H P A+ +Q +PGE
Sbjct: 189 NGKVPGPFLRVRVGDTVELHLKN--HKDSLMVHSVDFHGATGPGG--AAAFTQT--DPGE 242
Query: 116 TYLYRFKVDKAGTYFYHG---HLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDW 172
+ FK G Y YH + + G+YG L+V+ G + D EF ++ +
Sbjct: 243 ETVVTFKALIPGIYVYHCATPSVPTHITNGMYGLLLVEPEGGLPQ---VDREFYVMQGEI 299
Query: 173 W 173
+
Sbjct: 300 Y 300
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 88 HWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSL 147
H + + + +P G ++S + PG + FK+D+AG Y H + GL G L
Sbjct: 373 HVYSLGSVVSPPLIGVQTVS---VPPGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFL 429
Query: 148 IVD 150
VD
Sbjct: 430 NVD 432
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 23/109 (21%)
Query: 60 PGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLY 119
PGP I GDT+ +E TN + +H HG+ + +DGTA +++ + PG T Y
Sbjct: 38 PGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDFEIS--SDGTA-MNKSDVEPGGTRTY 93
Query: 120 RFKVDK-------------AGTYFYHGH-LGMQRSA-----GLYGSLIV 149
++ K AG + YH H +G + GLYG +IV
Sbjct: 94 TWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 142
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 45 PDCKESIV---MGINGQFP--GPTIRARAGDTIA-VELTNKLYTEGVVIHWHGIRQLGTP 98
PD +IV M IN + P GP A GD + V +T+ Y H HG R
Sbjct: 150 PDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYH--TFHMHGHR----- 202
Query: 99 WADGTASISQCPINP---------GETYLYRFKVDK-----AGTYFYHGHLGMQRSAGLY 144
WAD I P +P G + F++ AG + YH H+ G+
Sbjct: 203 WADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMV 262
Query: 145 GSLIVDVADG 154
G +V DG
Sbjct: 263 GLFLVKKPDG 272
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 474 HPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWA 533
H +H+HGH W R G T D+ T +G+ + GAW
Sbjct: 194 HTFHMHGHR-WADNR-TGILTGPDDPSRVIDNKI---TGPADSFGFQIIAGEGVGAGAWM 248
Query: 534 FHCHIEPHFHIGMGVVLALGVETVGNIP 561
+HCH++ H +GM V L L + G IP
Sbjct: 249 YHCHVQSHSDMGM-VGLFLVKKPDGTIP 275
>pdb|1MZY|A Chain A, Crystal Structure Of Nitrite Reductase
Length = 333
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 53 MGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPIN 112
M +G PGP + GD + + L N E + H IN
Sbjct: 55 MTFDGSIPGPLMIVHEGDYVELTLINP--PENTMPHNIDFHAATG----ALGGGGLTLIN 108
Query: 113 PGETYLYRFKVDKAGTYFYHGHLGM-----QRSAGLYGSLIVDVADG----EKEPFHYDG 163
PGE + RFK +AG + YH G +G+ G ++V DG E +P YD
Sbjct: 109 PGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVRYDT 168
Query: 164 EFNLLLSDWW 173
+ + SD +
Sbjct: 169 VYYIGESDHY 178
>pdb|1N70|A Chain A, The Crystal Structure Of Nitrite Reductase Mutant
His287ala From Rhodobacter Sphaeroides
Length = 334
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 53 MGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPIN 112
M +G PGP + GD + + L N E + H IN
Sbjct: 53 MTFDGSIPGPLMIVHEGDYVELTLINP--PENTMPHNIDFHAA----TGALGGGGLTLIN 106
Query: 113 PGETYLYRFKVDKAGTYFYHGHLGM-----QRSAGLYGSLIVDVADG----EKEPFHYDG 163
PGE + RFK +AG + YH G +G+ G ++V DG E +P YD
Sbjct: 107 PGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVRYDT 166
Query: 164 EFNLLLSDWW 173
+ + SD +
Sbjct: 167 VYYIGESDHY 176
>pdb|1ZV2|A Chain A, Cu-Containing Nitrite Reductase
pdb|2A3T|A Chain A, Cu-containing Nitrite Reductase
pdb|2DWS|A Chain A, Cu-containing Nitrite Reductase At Ph 8.4 With Bound
Nitrite
Length = 328
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 53 MGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPIN 112
M +G PGP + GD + + L N E + H IN
Sbjct: 50 MTFDGSIPGPLMIVHEGDYVELTLINP--PENTMPHNIDFHAATG----ALGGGGLTLIN 103
Query: 113 PGETYLYRFKVDKAGTYFYHGHLGM-----QRSAGLYGSLIVDVADG----EKEPFHYDG 163
PGE + RFK +AG + YH G +G+ G ++V DG E +P YD
Sbjct: 104 PGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVRYDT 163
Query: 164 EFNLLLSDWW 173
+ + SD +
Sbjct: 164 VYYIGESDHY 173
>pdb|2DWT|A Chain A, Cu-Containing Nitrite Reductase At Ph 6.0 With Bound
Nitrite
pdb|2DY2|A Chain A, Nitrite Reductase Ph 6.0
Length = 329
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 53 MGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPIN 112
M +G PGP + GD + + L N E + H IN
Sbjct: 50 MTFDGSIPGPLMIVHEGDYVELTLINP--PENTMPHNIDFHAATG----ALGGGGLTLIN 103
Query: 113 PGETYLYRFKVDKAGTYFYHGHLGM-----QRSAGLYGSLIVDVADG----EKEPFHYDG 163
PGE + RFK +AG + YH G +G+ G ++V DG E +P YD
Sbjct: 104 PGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVRYDT 163
Query: 164 EFNLLLSDWW 173
+ + SD +
Sbjct: 164 VYYIGESDHY 173
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 38 VEYMFWS--PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQL 95
V+ WS P + S V GING++ GPTIR GD + + +N+L TE V + G+ Q+
Sbjct: 25 VQRAHWSFTPGTRAS-VWGINGRYLGPTIRVWKGDDVKLIYSNRL-TENVSMTVAGL-QV 81
Query: 96 GTPWADGTASISQCPINPGETYLYRFKVDK-AGTYFYHGH----LGMQRSAGLYGSLIV- 149
P G A + ++P + + + A T +YH + Q GL G +V
Sbjct: 82 PGPLMGGPARM----MSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVE 137
Query: 150 -DVADGEKEPFHYD-GEFNLLLSD 171
+V+ P HY +F +++ D
Sbjct: 138 DEVSKSLPIPNHYGVDDFPVIIQD 161
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 53 MGINGQFPGPTIRARAGDTIAVEL----TNKLYTEGVVIHWHGIRQLGTPWADGTASISQ 108
M NG PGP + D + + L TN L I +H +
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHN---IDFHAATGA-------LGGGAL 111
Query: 109 CPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIVDVADGEK----EPFH 160
+NPGE RFK K G + YH G + ++G+ G+++V DG K +P
Sbjct: 112 TQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLT 171
Query: 161 YDGEFNLLLSDWW 173
YD + + D++
Sbjct: 172 YDKIYYVGEQDFY 184
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 53 MGINGQFPGPTIRARAGDTIAVEL----TNKLYTEGVVIHWHGIRQLGTPWADGTASISQ 108
M NG PGP + D + + L TN L I +H +
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHN---IDFHAATGA-------LGGGAL 111
Query: 109 CPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIVDVADGEK----EPFH 160
+NPGE RFK K G + YH G + ++G+ G+++V DG K +P
Sbjct: 112 TQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLT 171
Query: 161 YDGEFNLLLSDWW 173
YD + + D++
Sbjct: 172 YDKIYYVGEQDFY 184
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 53 MGINGQFPGPTIRARAGDTIAVEL----TNKLYTEGVVIHWHGIRQLGTPWADGTASISQ 108
M NG PGP + D + + L TN L I +H +
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHN---IDFHAATGA-------LGGGAL 111
Query: 109 CPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIVDVADGEK----EPFH 160
+NPGE RFK K G + YH G + ++G+ G+++V DG K +P
Sbjct: 112 TQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLT 171
Query: 161 YDGEFNLLLSDWW 173
YD + + D++
Sbjct: 172 YDKIYYVGEQDFY 184
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 53 MGINGQFPGPTIRARAGDTIAVEL----TNKLYTEGVVIHWHGIRQLGTPWADGTASISQ 108
M NG PGP + D + + L TN L I +H +
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHN---IDFHAATGA-------LGGGAL 111
Query: 109 CPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIVDVADGEK----EPFH 160
+NPGE RFK K G + YH G + ++G+ G+++V DG K +P
Sbjct: 112 TQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLT 171
Query: 161 YDGEFNLLLSDWW 173
YD + + D++
Sbjct: 172 YDKIYYVGEQDFY 184
>pdb|1MZZ|A Chain A, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|B Chain B, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|C Chain C, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
Length = 334
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 53 MGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPIN 112
M +G PGP + GD + + L N E + H IN
Sbjct: 55 MTFDGSIPGPLMIVHEGDYVELTLINP--PENTMPHNIDFHAA----TGALGGGGLTLIN 108
Query: 113 PGETYLYRFKVDKAGTYFYHGHLGM-----QRSAGLYGSLIVDVADG----EKEPFHYDG 163
PGE + RFK +AG + YH G +G G ++V DG E +P YD
Sbjct: 109 PGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGTAGCIMVLPRDGLKDHEGKPVRYDT 168
Query: 164 EFNLLLSDWW 173
+ + SD +
Sbjct: 169 VYYIGESDHY 178
>pdb|3H56|A Chain A, Met150leuPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 336
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +GL G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGLNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|2PPF|A Chain A, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|B Chain B, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|C Chain C, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
Length = 341
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I++H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNINFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|3H4H|A Chain A, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|B Chain B, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|C Chain C, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 335
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 54 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLTHNIDFHAATGA-------LGGGG 106
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 107 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 166
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 167 TYDKIYYVGEQDFY 180
>pdb|2FJS|A Chain A, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|B Chain B, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|C Chain C, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2E86|A Chain A, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|B Chain B, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|C Chain C, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
Length = 337
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1L9Q|A Chain A, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|B Chain B, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|C Chain C, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1L9T|A Chain A, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|B Chain B, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|C Chain C, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1L9R|A Chain A, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|B Chain B, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|C Chain C, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1SJM|A Chain A, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|B Chain B, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|C Chain C, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SNR|A Chain A, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|B Chain B, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|C Chain C, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|2P80|A Chain A, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|B Chain B, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|C Chain C, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2PP7|A Chain A, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|B Chain B, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|C Chain C, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP8|A Chain A, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|B Chain B, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|C Chain C, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP9|A Chain A, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|B Chain B, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|C Chain C, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PPA|A Chain A, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|B Chain B, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|C Chain C, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPC|A Chain A, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|B Chain B, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|C Chain C, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
Length = 341
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
Length = 343
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 61 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 113
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 114 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 173
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 174 TYDKIYYVGEQDFY 187
>pdb|1L9S|A Chain A, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|B Chain B, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|C Chain C, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1L9O|A Chain A, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|B Chain B, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|C Chain C, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
Length = 341
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1L9P|A Chain A, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|B Chain B, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|C Chain C, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
Length = 341
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 23 FETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYT 82
FETS+ K + ++E + P + S ++G PT+ A GD + V NK +
Sbjct: 29 FETSF-KKIVYREYEAYFQKEKPQSRTSGLLG-------PTLYAEVGDIMKVHFKNKAH- 79
Query: 83 EGVVIHWHGIR----QLGTPWADGTASISQC--PINPGETYLYRFKVDKAG--------- 127
+ + IH GI+ G ++D T + + + PG+ Y Y + + +
Sbjct: 80 KPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPC 139
Query: 128 -TYFYHGHLGMQR--SAGLYGSLIV 149
T+ Y+ ++ + ++GL G L++
Sbjct: 140 LTHIYYSYVNLVEDFNSGLIGPLLI 164
>pdb|1NPJ|A Chain A, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|B Chain B, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|C Chain C, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPN|A Chain A, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|B Chain B, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|C Chain C, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|2PPD|A Chain A, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|B Chain B, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|C Chain C, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPE|A Chain A, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|B Chain B, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|C Chain C, Reduced H145a Mutant Of Afnir Exposed To No
Length = 343
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 61 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 113
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 114 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWAVVSGMNGAIMVLPREGLHDGKGKAL 173
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 174 TYDKIYYVGEQDFY 187
>pdb|3H4F|A Chain A, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|B Chain B, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|C Chain C, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
Length = 336
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E + NG PGP + D + + L N + T I +H
Sbjct: 55 EVHALAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G+ G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 59 FPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPG--ET 116
PGP I GDT+ +E N + V +H HG+ + +DGT S+ + PG T
Sbjct: 39 IPGPLIELNEGDTLHIEFENTMDVP-VSLHVHGLDYEIS--SDGTKQ-SRSDVEPGGTRT 94
Query: 117 YLYR-----------FKVDKAGTYFYHGH-LGMQRSA-----GLYGSLIV 149
Y +R ++ AG + YH H +G + GLYG +IV
Sbjct: 95 YTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIV 144
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 474 HPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWA 533
H +HLHGH W R G T D+ +G+ + GAW
Sbjct: 196 HTFHLHGHR-WADNR-TGMLTGPDDPSQVIDNKI---CGPADSFGFQVIAGEGVGAGAWM 250
Query: 534 FHCHIEPHFHIGMGVVLALGVETVGNIPN 562
+HCH++ H +GM V L L + G IP
Sbjct: 251 YHCHVQSHSDMGM-VGLFLVKKPDGTIPG 278
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 50/130 (38%), Gaps = 27/130 (20%)
Query: 45 PDCKESIV---MGINGQ--FPGPTIRARAGDTIA-VELTNKLYTEGVVIHWHGIRQLGTP 98
PD +IV M IN + GP A GD + V +T+ Y H HG R
Sbjct: 152 PDRTHTIVFNDMTINNRPAHTGPDFEATVGDRVEFVMITHGEYYH--TFHLHGHR----- 204
Query: 99 WADGTASISQCPINP---------GETYLYRFKVDK-----AGTYFYHGHLGMQRSAGLY 144
WAD + P +P G + F+V AG + YH H+ G+
Sbjct: 205 WADNRTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMV 264
Query: 145 GSLIVDVADG 154
G +V DG
Sbjct: 265 GLFLVKKPDG 274
>pdb|1NTD|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant
M150e That Contains Zinc
Length = 343
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 61 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 113
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G G+++V + DG+ +
Sbjct: 114 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGENGAIMVLPREGLHDGKGKAL 173
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 174 TYDKIYYVGEQDFY 187
>pdb|1ZDQ|A Chain A, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|B Chain B, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|C Chain C, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDS|A Chain A, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|B Chain B, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|C Chain C, Crystal Structure Of Met150gly Afnir With Acetamide Bound
Length = 336
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 55 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 107
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G G+++V + DG+ +
Sbjct: 108 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGGNGAIMVLPREGLHDGKGKAL 167
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 168 TYDKIYYVGEQDFY 181
>pdb|2B08|A Chain A, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|B Chain B, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|C Chain C, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
Length = 340
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 49 ESIVMGINGQFPGPTIRARAGDTIAVELTN-KLYTEGVVIHWHGIRQLGTPWADGTASIS 107
E M NG PGP + D + + L N + T I +H
Sbjct: 58 EVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGA-------LGGGG 110
Query: 108 QCPINPGETYLYRFKVDKAGTYFYH----GHLGMQRSAGLYGSLIV----DVADGEKEPF 159
INPGE + RFK K G + YH G + +G G+++V + DG+ +
Sbjct: 111 LTEINPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGGNGAIMVLPREGLHDGKGKAL 170
Query: 160 HYDGEFNLLLSDWW 173
YD + + D++
Sbjct: 171 TYDKIYYVGEQDFY 184
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 471 SEIHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPG 530
S H +HLHGH W+ R + ++ D + +G+ + PG
Sbjct: 209 SNFHTFHLHGHR-WLDNRTGMRTSEYDPSPLIDIKDLNPGVS----FGFQVIAGEGVGPG 263
Query: 531 AWAFHCHIEPHFHIGM 546
W +HCH++ H +GM
Sbjct: 264 MWMYHCHVQNHSDMGM 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 25/110 (22%)
Query: 60 PGPTIRARAGDTIAVELTNKLYTEGVV-IHWHGIRQLGTPWADGTASISQCPINPGETYL 118
PGP + GDT+ ++L N T+ V+ +H HG+ +DGT ++ + PG+T
Sbjct: 56 PGPVLEMWEGDTLEIDLVNT--TDRVLSLHPHGVDY--DVNSDGTL-MNGSAVMPGQTRR 110
Query: 119 YRFKV-------------DKAGTYFYHGH-LGMQRSA-----GLYGSLIV 149
Y ++ AG + YH H +G + GLYG+L+V
Sbjct: 111 YTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVV 160
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 45 PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
P +++ G +GQ PGPTI R G + + TN++
Sbjct: 48 PQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRI 83
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 19/107 (17%)
Query: 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIR----QLGTPWADGTASISQ--CPINPG 114
GPTI+A DT+ + L N + + V +H G+ G + D T+ + + PG
Sbjct: 73 GPTIQAEVYDTVVITLKN-MASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPG 131
Query: 115 ETYLYRFKVDKAG----------TYFYHGHLGMQR--SAGLYGSLIV 149
++ Y ++V K TY Y H+ + + ++GL G+L+V
Sbjct: 132 GSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV 178
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 511 TAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG 553
T +FP+ + +NPG W CH + GM +L +
Sbjct: 667 TLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVS 709
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 19/107 (17%)
Query: 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIR----QLGTPWADGTASISQ--CPINPG 114
GPTI+A DT+ + L N + + V +H G+ G + D T+ + + PG
Sbjct: 74 GPTIQAEVYDTVVITLKN-MASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPG 132
Query: 115 ETYLYRFKVDKAG----------TYFYHGHLGMQR--SAGLYGSLIV 149
++ Y ++V K TY Y H+ + + ++GL G+L+V
Sbjct: 133 GSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV 179
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 511 TAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG 553
T +FP+ + +NPG W CH + GM +L +
Sbjct: 668 TLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVS 710
>pdb|1BXU|A Chain A, Oxidized Plastocyanin From Synechococcus Sp.
pdb|1BXV|A Chain A, Reduced Plastocyanin From Synechococcus Sp
Length = 91
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 59 FPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYL 118
F TI +AGDT+ + NKL VV+ G P S +PGET+
Sbjct: 16 FEPSTIEIQAGDTVQW-VNNKLAPHNVVVE-------GQP----ELSHKDLAFSPGETFE 63
Query: 119 YRFKVDKAGTYFYHGHLGMQRSAGLYGSLIV 149
F TY+ H R AG+ G ++V
Sbjct: 64 ATFSEPGTYTYYCEPH----RGAGMVGKIVV 90
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 402 PTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVY 448
P Y I G D+ +Q P + E DVM P V+ +TL G Y
Sbjct: 159 PAKYPSVIAVGAVDSSNQRAPFSSVGPELDVMAPGVSICSTLPGGKY 205
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 402 PTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVY 448
P Y I G D+ +Q P + E DVM P V+ +TL G Y
Sbjct: 159 PAKYPSVIAVGAVDSSNQRAPFSSVGPELDVMAPGVSICSTLPGGKY 205
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site:e498t Mutant
Length = 513
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116e Mutant
Length = 513
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of
Cota-Laccase: I494a Mutant
Length = 513
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116n Mutant
Length = 513
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: E498l Mutant
Length = 507
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: E498d Mutant
Length = 513
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116a Mutant
Length = 513
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein
From Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL 80
D + + G NG FPGPTI + + + V+ N L
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|1WSA|A Chain A, Structure Of L-Asparaginase Ii Precursor
pdb|1WSA|B Chain B, Structure Of L-Asparaginase Ii Precursor
Length = 330
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 374 RRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVM 433
R T LNT +N F P T +G++ YG + F Q+ P ++E+D+
Sbjct: 162 REATKLNT-TAVNAFAS----------PNTGKIGTVYYGKVEYFTQSVRPHTLASEFDIS 210
Query: 434 K 434
K
Sbjct: 211 K 211
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 370 TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNE 429
T F + ++N N++N F + + P+P GSI + D +G P FS
Sbjct: 48 TQFQGQANIVNKFNSLN-FQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQV 106
Query: 430 YDVMKPPVNANTTLGSGVYMLGL 452
+++M P N + + ++ L L
Sbjct: 107 FNLM-PSGNGGFMIFNDLFRLNL 128
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 45 PDCKESIVMGINGQFPGPTIRA-RAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGT 103
PD + ++G +G PGPT + R +T+ + N V +H R WA+
Sbjct: 52 PDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSRAAFDGWAEDI 111
Query: 104 ASISQCPINPGETYLYRF-KVDKAGTYFYHGHL-------GMQRSAGLYGSLIVDVA-DG 154
PG Y + A T +YH H + AGLY ++ D A D
Sbjct: 112 TE-------PGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLY--MLTDPAEDA 162
Query: 155 EKEPFHYDGEFNL 167
P Y GEF++
Sbjct: 163 LNLPSGY-GEFDI 174
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 402 PTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVY 448
P Y +I G ++ +Q + +E DVM P V+ +TL G Y
Sbjct: 168 PAKYPSTIAVGAVNSSNQRASFSSVGSELDVMAPGVSIQSTLPGGTY 214
>pdb|4G1G|A Chain A, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1G|B Chain B, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1L|A Chain A, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1L|B Chain B, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1O|A Chain A, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
pdb|4G1O|B Chain B, Crystal Structure Of Newcastle Disease Virus Matrix
Protein
Length = 364
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 431 DVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSE 472
DV K P A GS +Y L LN T+DV + + + +LS+
Sbjct: 185 DVYKIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSK 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,315,665
Number of Sequences: 62578
Number of extensions: 857232
Number of successful extensions: 2043
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 275
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)