Query 008038
Match_columns 580
No_of_seqs 181 out of 1575
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02191 L-ascorbate oxidase 100.0 2E-104 5E-109 861.1 61.6 551 25-576 17-570 (574)
2 TIGR03388 ascorbase L-ascorbat 100.0 2E-104 5E-109 861.2 60.2 538 31-568 1-539 (541)
3 PLN02604 oxidoreductase 100.0 9E-103 2E-107 850.7 63.0 558 12-571 5-565 (566)
4 PLN02835 oxidoreductase 100.0 1E-101 3E-106 832.0 59.4 518 4-572 2-536 (539)
5 PLN02991 oxidoreductase 100.0 1E-100 3E-105 820.2 59.8 496 26-572 23-535 (543)
6 PLN00044 multi-copper oxidase- 100.0 1E-100 3E-105 824.1 59.1 505 27-572 23-559 (596)
7 PLN02792 oxidoreductase 100.0 1E-100 2E-105 822.3 56.7 497 25-572 10-528 (536)
8 PLN02354 copper ion binding / 100.0 2E-100 4E-105 824.0 57.8 514 13-572 9-543 (552)
9 PLN02168 copper ion binding / 100.0 6.8E-99 1E-103 808.5 58.7 495 27-569 22-543 (545)
10 TIGR03389 laccase laccase, pla 100.0 2E-98 4E-103 815.0 58.1 511 29-567 1-539 (539)
11 KOG1263 Multicopper oxidases [ 100.0 2.4E-92 5.2E-97 751.3 55.5 514 22-573 19-561 (563)
12 TIGR03390 ascorbOXfungal L-asc 100.0 8.5E-92 1.8E-96 760.2 55.9 491 33-554 10-533 (538)
13 TIGR01480 copper_res_A copper- 100.0 7E-80 1.5E-84 665.8 50.6 421 32-552 46-586 (587)
14 PRK10965 multicopper oxidase; 100.0 5.5E-74 1.2E-78 615.9 44.4 411 31-552 45-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 7.5E-72 1.6E-76 594.6 43.1 398 33-554 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 2.1E-58 4.5E-63 494.1 42.0 403 45-554 47-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 8.9E-48 1.9E-52 389.1 25.1 266 27-330 23-298 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 3.9E-35 8.5E-40 253.6 10.8 115 37-152 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 5.1E-29 1.1E-33 224.3 10.8 109 441-555 29-137 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 3.1E-26 6.8E-31 210.7 17.3 152 163-329 1-158 (159)
21 TIGR01480 copper_res_A copper- 99.8 1.8E-18 4E-23 188.1 10.9 141 2-150 443-587 (587)
22 TIGR03095 rusti_cyanin rusticy 99.8 7.3E-18 1.6E-22 151.3 12.9 105 45-150 36-148 (148)
23 TIGR02376 Cu_nitrite_red nitri 99.7 1E-15 2.2E-20 155.4 24.0 233 233-553 59-296 (311)
24 TIGR03096 nitroso_cyanin nitro 99.4 2.5E-12 5.4E-17 111.4 11.1 104 19-136 12-121 (135)
25 PRK10965 multicopper oxidase; 99.4 1.3E-10 2.7E-15 126.1 24.8 257 32-315 180-512 (523)
26 PLN02835 oxidoreductase 99.3 4.1E-10 8.8E-15 122.6 22.7 272 50-328 191-512 (539)
27 TIGR03389 laccase laccase, pla 99.3 8.1E-10 1.7E-14 121.2 25.2 259 51-314 167-508 (539)
28 PRK10883 FtsI repressor; Provi 99.3 1.4E-10 3E-15 124.6 17.8 242 33-315 181-457 (471)
29 PLN02354 copper ion binding / 99.1 3.3E-08 7.2E-13 108.0 24.1 254 51-311 190-504 (552)
30 TIGR03388 ascorbase L-ascorbat 99.0 8.5E-09 1.8E-13 113.1 19.0 248 63-314 204-512 (541)
31 PLN02991 oxidoreductase 99.0 6E-08 1.3E-12 105.4 24.6 257 50-311 190-496 (543)
32 COG2132 SufI Putative multicop 99.0 9.1E-09 2E-13 110.9 18.2 238 46-315 185-438 (451)
33 TIGR03390 ascorbOXfungal L-asc 99.0 1.9E-08 4.1E-13 110.1 20.6 233 233-536 39-281 (538)
34 PLN02792 oxidoreductase 99.0 2.5E-08 5.3E-13 108.5 19.7 220 233-536 47-268 (536)
35 PLN02168 copper ion binding / 99.0 3.7E-08 8E-13 107.2 20.8 255 51-311 189-501 (545)
36 PF07731 Cu-oxidase_2: Multico 98.9 1E-09 2.2E-14 98.5 5.7 90 61-151 33-136 (138)
37 PLN02604 oxidoreductase 98.9 2.8E-08 6.1E-13 109.4 16.6 244 233-538 55-302 (566)
38 PLN02191 L-ascorbate oxidase 98.9 6E-08 1.3E-12 106.7 18.6 244 233-536 54-302 (574)
39 PLN00044 multi-copper oxidase- 98.8 5E-07 1.1E-11 99.0 19.9 228 233-533 60-291 (596)
40 PF07732 Cu-oxidase_3: Multico 98.7 2.4E-08 5.1E-13 86.5 5.5 89 447-555 27-116 (117)
41 PRK02710 plastocyanin; Provisi 98.5 1.3E-06 2.9E-11 75.9 12.4 74 61-150 46-119 (119)
42 KOG1263 Multicopper oxidases [ 98.4 4.2E-05 9.2E-10 83.2 23.0 280 30-314 158-524 (563)
43 TIGR02656 cyanin_plasto plasto 98.4 1.3E-06 2.9E-11 73.3 8.3 84 59-150 14-99 (99)
44 PF13473 Cupredoxin_1: Cupredo 98.3 1.7E-06 3.6E-11 73.5 6.3 73 59-149 32-104 (104)
45 PF00127 Copper-bind: Copper b 98.2 5.3E-06 1.1E-10 69.7 7.4 84 60-150 15-99 (99)
46 TIGR03095 rusti_cyanin rusticy 98.1 1.4E-05 3E-10 72.0 8.3 87 447-552 53-147 (148)
47 TIGR03094 sulfo_cyanin sulfocy 98.0 0.00017 3.6E-09 65.1 12.6 97 52-152 74-187 (195)
48 PF00394 Cu-oxidase: Multicopp 98.0 2.9E-05 6.4E-10 71.3 8.2 89 446-550 60-153 (159)
49 PRK02888 nitrous-oxide reducta 97.9 6E-05 1.3E-09 81.7 10.5 97 43-152 534-635 (635)
50 PF06525 SoxE: Sulfocyanin (So 97.9 0.00023 5E-09 65.7 12.8 101 52-153 75-189 (196)
51 TIGR02657 amicyanin amicyanin. 97.6 0.0003 6.4E-09 56.9 8.2 74 61-150 10-83 (83)
52 TIGR02656 cyanin_plasto plasto 97.6 0.00025 5.4E-09 59.5 7.7 80 448-552 19-98 (99)
53 TIGR02375 pseudoazurin pseudoa 97.5 0.00057 1.2E-08 58.7 8.1 77 61-154 14-91 (116)
54 TIGR03096 nitroso_cyanin nitro 97.2 0.0014 3.1E-08 57.2 7.9 58 448-538 63-120 (135)
55 TIGR03102 halo_cynanin halocya 97.2 0.0029 6.3E-08 54.3 9.5 77 59-150 39-115 (115)
56 COG3794 PetE Plastocyanin [Ene 97.2 0.0019 4.2E-08 56.0 8.3 75 62-151 54-128 (128)
57 PF00127 Copper-bind: Copper b 96.6 0.016 3.4E-07 48.6 8.7 80 447-552 18-98 (99)
58 PF13473 Cupredoxin_1: Cupredo 96.4 0.012 2.7E-07 49.7 7.3 67 447-547 36-102 (104)
59 PRK02710 plastocyanin; Provisi 95.9 0.035 7.6E-07 48.2 7.8 70 448-552 49-118 (119)
60 PF00116 COX2: Cytochrome C ox 95.7 0.065 1.4E-06 46.5 8.7 74 61-149 45-119 (120)
61 PRK02888 nitrous-oxide reducta 95.6 0.046 9.9E-07 59.9 8.7 78 447-554 556-634 (635)
62 COG4454 Uncharacterized copper 95.2 0.06 1.3E-06 47.9 6.6 94 448-554 65-158 (158)
63 TIGR02375 pseudoazurin pseudoa 93.5 0.42 9.2E-06 41.1 8.0 35 516-554 54-88 (116)
64 COG4454 Uncharacterized copper 93.4 0.6 1.3E-05 41.7 8.9 89 58-151 59-158 (158)
65 TIGR02657 amicyanin amicyanin. 92.1 0.77 1.7E-05 36.9 7.4 70 448-552 13-82 (83)
66 PRK10378 inactive ferrous ion 91.8 1.9 4.2E-05 44.8 11.6 78 58-153 40-119 (375)
67 TIGR02866 CoxB cytochrome c ox 91.7 1.8 3.9E-05 41.3 10.6 77 61-152 116-193 (201)
68 PF00116 COX2: Cytochrome C ox 90.8 2.5 5.5E-05 36.6 9.8 61 233-313 46-106 (120)
69 TIGR03102 halo_cynanin halocya 90.7 1.6 3.4E-05 37.5 8.2 71 448-552 44-114 (115)
70 PF06525 SoxE: Sulfocyanin (So 90.7 2.4 5.1E-05 39.7 9.8 97 445-554 85-187 (196)
71 TIGR02695 azurin azurin. Azuri 90.5 1.6 3.5E-05 37.6 7.9 86 61-148 15-124 (125)
72 COG1622 CyoA Heme/copper-type 90.3 1 2.2E-05 44.2 7.5 79 61-154 136-215 (247)
73 TIGR03094 sulfo_cyanin sulfocy 89.2 3 6.5E-05 38.3 9.0 98 444-554 83-186 (195)
74 PF12690 BsuPI: Intracellular 88.6 1.8 3.9E-05 34.7 6.5 66 243-309 4-82 (82)
75 TIGR02866 CoxB cytochrome c ox 85.7 3.9 8.4E-05 39.0 8.2 70 447-552 118-190 (201)
76 TIGR02695 azurin azurin. Azuri 83.8 6.6 0.00014 34.0 7.8 80 233-312 16-113 (125)
77 COG3794 PetE Plastocyanin [Ene 83.7 6.1 0.00013 34.5 7.7 30 522-553 98-127 (128)
78 COG4263 NosZ Nitrous oxide red 81.2 2 4.4E-05 44.8 4.4 78 62-150 558-636 (637)
79 PF07705 CARDB: CARDB; InterP 78.8 31 0.00067 28.0 10.4 69 236-313 14-85 (101)
80 PRK10378 inactive ferrous ion 76.3 14 0.00031 38.5 9.0 77 230-329 41-117 (375)
81 COG1622 CyoA Heme/copper-type 72.8 14 0.00031 36.2 7.6 66 448-547 139-204 (247)
82 MTH00047 COX2 cytochrome c oxi 67.3 1.1E+02 0.0025 28.8 12.8 77 62-153 116-193 (194)
83 PF05506 DUF756: Domain of unk 63.8 40 0.00088 27.2 7.4 63 61-132 8-73 (89)
84 TIGR01433 CyoA cytochrome o ub 62.8 15 0.00032 35.7 5.3 70 448-551 141-211 (226)
85 PF12690 BsuPI: Intracellular 61.1 27 0.00058 28.0 5.7 58 62-131 16-80 (82)
86 MTH00140 COX2 cytochrome c oxi 60.6 1.5E+02 0.0032 28.8 12.0 77 61-152 139-216 (228)
87 PF01835 A2M_N: MG2 domain; I 57.0 27 0.00058 28.6 5.4 70 237-312 11-86 (99)
88 TIGR01432 QOXA cytochrome aa3 54.8 25 0.00053 33.9 5.4 58 448-539 132-189 (217)
89 PF14874 PapD-like: Flagellar- 54.2 83 0.0018 25.8 8.0 64 236-306 15-81 (102)
90 PF04151 PPC: Bacterial pre-pe 53.9 80 0.0017 24.0 7.3 64 234-310 6-69 (70)
91 PF10633 NPCBM_assoc: NPCBM-as 53.5 83 0.0018 24.5 7.4 65 238-311 2-75 (78)
92 COG2967 ApaG Uncharacterized p 53.3 16 0.00034 31.2 3.2 53 74-128 34-95 (126)
93 PF14344 DUF4397: Domain of un 53.3 1.4E+02 0.0031 25.3 11.3 22 278-299 62-83 (122)
94 MTH00047 COX2 cytochrome c oxi 52.0 1E+02 0.0023 29.1 9.0 60 234-313 117-176 (194)
95 PF11142 DUF2917: Protein of u 49.0 44 0.00095 25.2 4.8 47 235-293 2-48 (63)
96 PF05938 Self-incomp_S1: Plant 48.7 98 0.0021 26.0 7.6 70 73-152 2-71 (110)
97 PF10633 NPCBM_assoc: NPCBM-as 48.5 22 0.00048 27.9 3.3 60 67-129 2-69 (78)
98 PTZ00047 cytochrome c oxidase 47.4 1.1E+02 0.0023 28.0 7.8 71 447-551 74-145 (162)
99 TIGR01433 CyoA cytochrome o ub 45.0 60 0.0013 31.5 6.4 60 234-313 140-199 (226)
100 MTH00139 COX2 cytochrome c oxi 43.3 71 0.0015 31.0 6.6 67 446-546 140-206 (226)
101 MTH00140 COX2 cytochrome c oxi 42.6 1.1E+02 0.0024 29.6 7.9 71 447-551 141-212 (228)
102 PF07691 PA14: PA14 domain; I 38.9 2.1E+02 0.0045 24.9 8.6 61 234-299 53-120 (145)
103 PRK05461 apaG CO2+/MG2+ efflux 37.5 80 0.0017 27.6 5.4 51 242-295 32-86 (127)
104 MTH00023 COX2 cytochrome c oxi 37.5 1.2E+02 0.0025 29.8 7.2 68 447-548 152-219 (240)
105 COG1470 Predicted membrane pro 37.4 3.5E+02 0.0076 29.1 10.7 76 232-314 388-470 (513)
106 PTZ00047 cytochrome c oxidase 37.4 1.6E+02 0.0036 26.8 7.4 74 63-151 74-148 (162)
107 MTH00038 COX2 cytochrome c oxi 36.8 1.2E+02 0.0026 29.5 7.0 69 447-549 141-209 (229)
108 MTH00129 COX2 cytochrome c oxi 36.5 1E+02 0.0022 30.0 6.5 62 447-542 141-202 (230)
109 PF04379 DUF525: Protein of un 36.4 76 0.0017 25.9 4.7 51 242-295 15-69 (90)
110 MTH00098 COX2 cytochrome c oxi 34.4 1.3E+02 0.0029 29.1 6.9 71 447-551 141-212 (227)
111 COG1188 Ribosome-associated he 32.6 38 0.00082 28.1 2.4 29 51-79 34-62 (100)
112 MTH00185 COX2 cytochrome c oxi 32.3 1.6E+02 0.0036 28.6 7.2 68 447-548 141-208 (230)
113 MTH00154 COX2 cytochrome c oxi 32.3 1.3E+02 0.0027 29.3 6.4 70 447-550 141-211 (227)
114 MTH00008 COX2 cytochrome c oxi 32.3 1.5E+02 0.0033 28.7 7.0 75 62-151 140-215 (228)
115 PRK10525 cytochrome o ubiquino 31.5 1E+02 0.0022 31.6 5.7 69 448-550 153-222 (315)
116 PF10989 DUF2808: Protein of u 31.2 55 0.0012 29.3 3.5 26 514-539 99-128 (146)
117 COG4263 NosZ Nitrous oxide red 29.7 1.1E+02 0.0023 32.6 5.5 79 45-134 529-609 (637)
118 MTH00168 COX2 cytochrome c oxi 28.9 1.3E+02 0.0028 29.1 5.9 63 446-542 140-202 (225)
119 PF14392 zf-CCHC_4: Zinc knuck 28.2 87 0.0019 22.2 3.4 39 506-544 6-45 (49)
120 PF11614 FixG_C: IG-like fold 28.2 2E+02 0.0043 24.4 6.4 48 242-298 34-83 (118)
121 MTH00117 COX2 cytochrome c oxi 27.7 2.1E+02 0.0045 27.8 7.0 68 447-548 141-208 (227)
122 PRK05461 apaG CO2+/MG2+ efflux 27.5 76 0.0016 27.7 3.6 19 101-120 67-85 (127)
123 MTH00080 COX2 cytochrome c oxi 27.4 1.6E+02 0.0036 28.6 6.2 71 447-551 144-215 (231)
124 PF07385 DUF1498: Protein of u 27.2 1.9E+02 0.0041 27.8 6.3 50 234-293 111-166 (225)
125 PF05753 TRAP_beta: Translocon 27.0 2.5E+02 0.0055 26.1 7.2 96 14-129 1-103 (181)
126 PF14451 Ub-Mut7C: Mut7-C ubiq 26.2 64 0.0014 25.8 2.6 28 48-75 47-74 (81)
127 MTH00129 COX2 cytochrome c oxi 26.2 2.2E+02 0.0048 27.6 6.9 75 62-151 140-215 (230)
128 PRK13202 ureB urease subunit b 25.6 1.8E+02 0.004 24.3 5.2 63 234-297 12-84 (104)
129 MTH00008 COX2 cytochrome c oxi 25.3 3.3E+02 0.0071 26.4 7.9 70 447-550 141-211 (228)
130 COG4633 Plastocyanin domain co 25.1 3.3E+02 0.0072 26.2 7.4 88 45-154 80-172 (272)
131 PF05506 DUF756: Domain of unk 25.1 3.6E+02 0.0077 21.5 11.2 58 241-310 20-77 (89)
132 MTH00027 COX2 cytochrome c oxi 24.9 1.9E+02 0.004 28.8 6.2 71 447-551 175-246 (262)
133 TIGR01432 QOXA cytochrome aa3 24.6 1.8E+02 0.004 27.9 6.0 75 62-152 130-206 (217)
134 MTH00051 COX2 cytochrome c oxi 24.6 1.8E+02 0.0039 28.4 6.0 73 62-151 144-219 (234)
135 MTH00051 COX2 cytochrome c oxi 24.4 2.3E+02 0.0049 27.7 6.6 66 446-545 144-209 (234)
136 TIGR00192 urease_beta urease, 24.1 2E+02 0.0043 24.0 5.1 63 234-297 12-83 (101)
137 MTH00154 COX2 cytochrome c oxi 23.8 2.5E+02 0.0053 27.3 6.7 60 234-313 141-200 (227)
138 smart00758 PA14 domain in bact 23.5 4.7E+02 0.01 22.4 8.8 61 234-299 51-112 (136)
139 PRK10525 cytochrome o ubiquino 23.5 1.4E+02 0.0031 30.5 5.1 61 234-314 152-212 (315)
140 PF12306 PixA: Inclusion body 23.3 3.9E+02 0.0083 24.7 7.6 32 62-93 58-89 (172)
141 PLN02957 copper, zinc superoxi 23.2 5.1E+02 0.011 25.2 8.9 102 454-579 106-216 (238)
142 PF10989 DUF2808: Protein of u 23.0 92 0.002 27.9 3.4 27 108-134 96-126 (146)
143 MTH00098 COX2 cytochrome c oxi 21.3 3.3E+02 0.0072 26.4 7.1 75 62-151 140-215 (227)
144 MTH00076 COX2 cytochrome c oxi 21.2 2.8E+02 0.006 26.9 6.5 63 447-543 141-203 (228)
145 MTH00185 COX2 cytochrome c oxi 21.1 2.7E+02 0.0058 27.1 6.4 59 234-312 141-199 (230)
146 PF11322 DUF3124: Protein of u 20.9 3.2E+02 0.007 23.8 6.0 56 243-302 27-82 (125)
147 KOG0022 Alcohol dehydrogenase, 20.9 1.4E+02 0.0029 30.6 4.2 64 505-572 18-102 (375)
148 TIGR03079 CH4_NH3mon_ox_B meth 20.6 3.8E+02 0.0083 27.8 7.4 18 107-124 336-353 (399)
149 TIGR02988 YaaA_near_RecF S4 do 20.5 65 0.0014 23.7 1.6 23 52-74 35-58 (59)
150 COG3241 Azurin [Energy product 20.2 1.2E+02 0.0027 26.0 3.3 43 271-313 91-138 (151)
No 1
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=2.1e-104 Score=861.12 Aligned_cols=551 Identities=67% Similarity=1.216 Sum_probs=425.8
Q ss_pred cccCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC
Q 008038 25 TSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA 104 (580)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~ 104 (580)
..+.+++++|+|+|++..+++||+++++++|||++|||+||+++||+|+|+|+|+|..++++|||||+++.+++|+||+|
T Consensus 17 ~~~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~ 96 (574)
T PLN02191 17 HTASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAA 96 (574)
T ss_pred HhhccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCC
Confidence 34457899999999999999999999999999999999999999999999999996558999999999999999999999
Q ss_pred CCccccCCCCCeEEEEEEcCCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCCCCcceEEEEeecccCchHHHHhhh
Q 008038 105 SISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGL 184 (580)
Q Consensus 105 ~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~~~d~~~~~~~~~~~~~ 184 (580)
+++||+|+||++|+|+|++.++||||||||.+.|+.+||+|+|||+++.+...+..||+|++|+++||++..........
T Consensus 97 gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 176 (574)
T PLN02191 97 GVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRYDGEFNLLLSDWWHESIPSQELGL 176 (574)
T ss_pred ccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCCCCCeeEEEeeeccccCChHHHHHhh
Confidence 99999999999999999999999999999999999999999999997665455677899999999999998754433333
Q ss_pred cCCCCCCCCCCceEEeCccCCCCccccccccCC-CcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCe
Q 008038 185 SSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNG-SAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNH 263 (580)
Q Consensus 185 ~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh 263 (580)
...+..+..+++.+||||++...|........+ ....|.+..++.+.+.++++++||+|||||||+|+...+.|+|+||
T Consensus 177 ~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH 256 (574)
T PLN02191 177 SSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGH 256 (574)
T ss_pred ccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCC
Confidence 332323345789999999999888542211111 1123555555556666899999999999999999999999999999
Q ss_pred eeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCceEEEEecCCCCCCCCCCCCCCC
Q 008038 264 KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPIT 343 (580)
Q Consensus 264 ~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~ 343 (580)
+|+|||+||.+++|+.+++|.|++||||||+|++++.++++||||+.....+.......|||+|.+......+....+..
T Consensus 257 ~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~ 336 (574)
T PLN02191 257 KLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVT 336 (574)
T ss_pred eEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999844568999997655443333457999998654332222222333
Q ss_pred CCCCCCCccccccccccccCCCCCCC-CCcceEEEEEeeeeecCCeEEEEEcceeccCCCCCcchhhhccCCccCCCCCC
Q 008038 344 PRWDDYDHSKSFSNKIFALMGSPKPP-TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGP 422 (580)
Q Consensus 344 p~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~ 422 (580)
|.+.+......+...+......+.+| ...++.+.+... ....+...|.+|+.+|..|..|.|.+...+..+.|+...+
T Consensus 337 p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~ 415 (574)
T PLN02191 337 PRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ-NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSP 415 (574)
T ss_pred CcccccchhhcccccccccccCCCCCCcccceEEEeccc-ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCC
Confidence 44443322221211111111111122 223455544322 1123456899999999999999988887666666655544
Q ss_pred CCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCc-cccccc
Q 008038 423 PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTK-EDEKKF 501 (580)
Q Consensus 423 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~-~~~~~~ 501 (580)
+..+..+++..+.......+.++.++.++.|++|||+|+|....++.....||||||||+|+||++|.|.|++ .+...+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~ 495 (574)
T PLN02191 416 PRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTY 495 (574)
T ss_pred cccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccc
Confidence 4333223322211111123456778999999999999999752111123389999999999999999999986 233578
Q ss_pred CCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEEecccccccCCCccccccCCCCcCCCC
Q 008038 502 NLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGKRFMN 576 (580)
Q Consensus 502 ~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~ 576 (580)
|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+++++++++|+.++.|+.++..-++
T Consensus 496 nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~~~~~~~p~~~~~C~~~~~~~~~ 570 (574)
T PLN02191 496 NLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGLNRIGKIPDEALGCGLTKQFLMN 570 (574)
T ss_pred cCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecChhhccCCCcchhhhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988774443
No 2
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.1e-104 Score=861.21 Aligned_cols=538 Identities=77% Similarity=1.351 Sum_probs=430.1
Q ss_pred eEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCcccc
Q 008038 31 TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCP 110 (580)
Q Consensus 31 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~ 110 (580)
+|+|+|+|++..++|||+++.+|+|||++|||+|++++||+|+|+|+|+|..++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 48999999999999999999999999999999999999999999999996568999999999999999999999999999
Q ss_pred CCCCCeEEEEEEcCCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCCCCcceEEEEeecccCchHHHHhhhcCCCCC
Q 008038 111 INPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLR 190 (580)
Q Consensus 111 i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~~~d~~~~~~~~~~~~~~~~~~~ 190 (580)
|+||++++|+|++.++||||||||.+.|+.+||+|+|||+++.++..|+.||+|++|+++||+++...+........+..
T Consensus 81 I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~ 160 (541)
T TIGR03388 81 INPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSKPMR 160 (541)
T ss_pred cCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccCCCc
Confidence 99999999999999999999999999999999999999999876667888999999999999999876555444433333
Q ss_pred CCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEE
Q 008038 191 WIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEA 270 (580)
Q Consensus 191 ~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~ 270 (580)
+..+++.++|||++..+|.............|....++...+..++|++|++|||||||+|..+.+.|+|+||+|+|||+
T Consensus 161 ~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~ 240 (541)
T TIGR03388 161 WIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEA 240 (541)
T ss_pred CCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEe
Confidence 33578999999999888865322111122345444455556667999999999999999999999999999999999999
Q ss_pred CCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 008038 271 DGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYD 350 (580)
Q Consensus 271 DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~ 350 (580)
||.+++|+.++.+.|++||||||+|++++.++++|||++.....+.+....+|||+|.++.....++...+..|.+.+..
T Consensus 241 DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~ 320 (541)
T TIGR03388 241 DGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFD 320 (541)
T ss_pred CCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccc
Confidence 99999999999999999999999999987555789999987655444556789999986543322222233345454433
Q ss_pred ccccccccccccCCCCCCCCCcceEEEEEeeeeecCCeEEEEEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCc
Q 008038 351 HSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEY 430 (580)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~ 430 (580)
....+............++...++++.+.......++...|++|+.+|..|..|.|.+...++...|+...++..+..++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 400 (541)
T TIGR03388 321 RSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDY 400 (541)
T ss_pred hhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccc
Confidence 22222212211111123344557776654443323455689999999999999999888766666665554554444444
Q ss_pred ccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCc-ccccccCCCCCCcc
Q 008038 431 DVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTK-EDEKKFNLKNPPLK 509 (580)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~-~~~~~~~~~~p~~r 509 (580)
+....+.+...+.++.++.++.|++|+++|+|.+.+.......||||||||+||||+++.|.|+. .+...+|+.||++|
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~R 480 (541)
T TIGR03388 401 DIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLR 480 (541)
T ss_pred cccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEe
Confidence 43333333345667889999999999999999753211123479999999999999999898875 23457899999999
Q ss_pred ceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEEecccccccCCCccccccC
Q 008038 510 NTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACG 568 (580)
Q Consensus 510 DTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~~~~~~p~~~~~c~ 568 (580)
||+.|+++||++|||++||||.|+|||||+||+..||+++|.+++++++.+|+.+++||
T Consensus 481 DTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~~~~~~~P~~~~~C~ 539 (541)
T TIGR03388 481 NTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGKLPKEALGCG 539 (541)
T ss_pred ceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccccccCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999998
No 3
>PLN02604 oxidoreductase
Probab=100.00 E-value=8.8e-103 Score=850.68 Aligned_cols=558 Identities=53% Similarity=0.989 Sum_probs=432.3
Q ss_pred HHHHHHHHHHhhccccCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeecc
Q 008038 12 VTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHG 91 (580)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG 91 (580)
++.++++++.+....+.+++++|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|++..++++|||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG 84 (566)
T PLN02604 5 LALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHG 84 (566)
T ss_pred hhHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCC
Confidence 33444555566666678899999999999999999999999999999999999999999999999999657899999999
Q ss_pred ccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCCCCcceEEEEee
Q 008038 92 IRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSD 171 (580)
Q Consensus 92 ~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~~~d 171 (580)
+++.+++|+||+++++||+|+||++++|+|++.++||||||||...|+.+||+|+|||+++.++..|+.+|+|.+|+|+|
T Consensus 85 ~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~d~~l~l~D 164 (566)
T PLN02604 85 IRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFSYDYDRSIILTD 164 (566)
T ss_pred CCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCccccCcceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999987666788899999999999
Q ss_pred cccCchHHHHhhhcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecC
Q 008038 172 WWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTT 251 (580)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag 251 (580)
|++.+..+........+..+..+++..+|||++..+|+.... .......|. ..++.+.++.+++++|++|||||||+|
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~v~~g~~~RlRlINa~ 242 (566)
T PLN02604 165 WYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSS-PYLKAGVCN-ATNPECSPYVLTVVPGKTYRLRISSLT 242 (566)
T ss_pred cccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccC-ccccccccc-cCCCCCCceEEEecCCCEEEEEEEecc
Confidence 999987665554443332223478999999999988863100 000001233 223344566899999999999999999
Q ss_pred CceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCceEEEEecCCC
Q 008038 252 ALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTS 331 (580)
Q Consensus 252 ~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~~ail~y~~~~ 331 (580)
....+.|+|+||+|+|||+||.+++|++++.|.|++||||||+|++++.++++|||++.....+.+...+.|||+|++..
T Consensus 243 ~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~ 322 (566)
T PLN02604 243 ALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNH 322 (566)
T ss_pred ccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCC
Confidence 99999999999999999999999999999999999999999999998844468999987655554557779999998543
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccccccccCC-CCCCCCCcceEEEEEeeeeecCCeEEEEEcceeccCCCCCcchhhh
Q 008038 332 ASKIPLSPPPITPRWDDYDHSKSFSNKIFALMG-SPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIK 410 (580)
Q Consensus 332 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~ 410 (580)
....++...+..+.+++..........+..... ...++...++++.+....+..++...|+||+.+|..|..|.|.+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~ 402 (566)
T PLN02604 323 PRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALK 402 (566)
T ss_pred CCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhh
Confidence 221122222222333332211111111111111 1122334567766544433334567999999999999999888877
Q ss_pred ccCCccCCCCCCCCCCC-CCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeec
Q 008038 411 YGLKDAFDQNGPPENFS-NEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRG 489 (580)
Q Consensus 411 ~~~~~~f~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~ 489 (580)
....+.|+.+.++..+. .+++......+...+.+..++.++.|++||++|+|.+.+.......||||||||+|+||+++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G 482 (566)
T PLN02604 403 ENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYG 482 (566)
T ss_pred hcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEec
Confidence 65566665443332221 11111111111123446778999999999999999753311123479999999999999999
Q ss_pred CCCCCc-ccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEEecccccccCCCccccccC
Q 008038 490 EGKFTK-EDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACG 568 (580)
Q Consensus 490 ~g~~~~-~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~~~~~~p~~~~~c~ 568 (580)
.|.|++ .+...+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+++++++.+|+.+++|+
T Consensus 483 ~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~~~~~~~p~~~~~C~ 562 (566)
T PLN02604 483 EGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLPSSIMGCG 562 (566)
T ss_pred CCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeChhhccCCCCCcCccc
Confidence 999876 3345789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008038 569 LTG 571 (580)
Q Consensus 569 ~~~ 571 (580)
..+
T Consensus 563 ~~~ 565 (566)
T PLN02604 563 ESK 565 (566)
T ss_pred cCC
Confidence 655
No 4
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.4e-101 Score=831.98 Aligned_cols=518 Identities=29% Similarity=0.505 Sum_probs=405.8
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCC
Q 008038 4 GLRHVAVVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTE 83 (580)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~ 83 (580)
|..-.++.++..+..++++....+.+.+++|+|+|++..+++||+++.+|+|||++|||+||+++||+|+|+|+|+ +++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~-L~~ 80 (539)
T PLN02835 2 GSAVNLHLLLGVLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINK-LDQ 80 (539)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeC-CCC
Confidence 4444555666666666666666677899999999999999999999999999999999999999999999999999 789
Q ss_pred ceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEc-CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCC-CC
Q 008038 84 GVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HY 161 (580)
Q Consensus 84 ~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~-~~ 161 (580)
+++|||||+++.+++|+||+++ +||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++++.+.|+ .+
T Consensus 81 ~ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~ 159 (539)
T PLN02835 81 PFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLP 159 (539)
T ss_pred CCcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCC
Confidence 9999999999999999999999 99999999999999997 799999999999999999999999998765544454 35
Q ss_pred CcceEEEEeecccCchHHHHhhhcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCC
Q 008038 162 DGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNK 241 (580)
Q Consensus 162 d~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge 241 (580)
|+|++|+++||++.+...+...+.. +.. ...++.+||||+..+ .+++++||
T Consensus 160 d~e~~l~l~Dw~~~~~~~~~~~~~~-g~~-~~~~d~~liNG~~~~---------------------------~~~v~~G~ 210 (539)
T PLN02835 160 DGDFTLLVGDWYKTSHKTLQQRLDS-GKV-LPFPDGVLINGQTQS---------------------------TFSGDQGK 210 (539)
T ss_pred CceEEEEeeccccCCHHHHHHHhhc-CCC-CCCCceEEEccccCc---------------------------eEEECCCC
Confidence 8999999999999986654433332 222 457899999999865 68999999
Q ss_pred EEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCc
Q 008038 242 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPA 321 (580)
Q Consensus 242 ~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~ 321 (580)
+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|++||||||+|++++ ++|+|||++.....+ .....
T Consensus 211 ~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~-~~g~y~i~a~~~~~~-~~~~~ 288 (539)
T PLN02835 211 TYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ-SPKDYYIVASTRFTR-QILTA 288 (539)
T ss_pred EEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCC-CCCcEEEEEEccccC-CCcce
Confidence 9999999999999999999999999999999999999999999999999999999997 568999998643222 33567
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCCCC---CCCccccccccccccCCCCCC-------CCCcceEEEEEeeeeecCCeEEE
Q 008038 322 LTLLNYHPTSASKIPLSPPPITPRWD---DYDHSKSFSNKIFALMGSPKP-------PTNFHRRLTLLNTQNTINGFTKW 391 (580)
Q Consensus 322 ~ail~y~~~~~~~~~~~~~p~~p~~~---~~~~~~~~~~~~~~~~~~~~~-------p~~~~r~~~~~~~~~~~~~~~~~ 391 (580)
.|+|+|+++..... .+.|..|.+. +..........+......+.+ ....++++.+.......++...|
T Consensus 289 ~ail~Y~~~~~~~~--~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w 366 (539)
T PLN02835 289 TAVLHYSNSRTPAS--GPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRY 366 (539)
T ss_pred EEEEEECCCCCCCC--CCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEE
Confidence 89999986432111 1112222110 111001110001110000000 01124444443222222456799
Q ss_pred EEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCC
Q 008038 392 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLS 471 (580)
Q Consensus 392 ~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~ 471 (580)
++||++|..|..|.|.+.+.+..+.|+....+ ..+.+.....++.++.++.|++|+|+|+|.+..
T Consensus 367 ~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~----- 431 (539)
T PLN02835 367 AVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQ----------SLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKT----- 431 (539)
T ss_pred EECCcccCCCCCChhhhhhhcCCCccccCccc----------cCCCCCccccCCeEEEcCCCCEEEEEEECCCCC-----
Confidence 99999999999998877665554444322100 001111234467889999999999999998766
Q ss_pred CCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEE-
Q 008038 472 EIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL- 550 (580)
Q Consensus 472 ~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~- 550 (580)
.||||||||+|+||+++.|.|++.....+|+.||++|||+.|+++||++|||+|||||.|+|||||++|+..||+++|
T Consensus 432 -~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~ 510 (539)
T PLN02835 432 -MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLR 510 (539)
T ss_pred -CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEE
Confidence 899999999999999999989764445678999999999999999999999999999999999999999999999999
Q ss_pred ----ecccccccCCCccccccCCCCc
Q 008038 551 ----ALGVETVGNIPNQALACGLTGK 572 (580)
Q Consensus 551 ----~~~~~~~~~~p~~~~~c~~~~~ 572 (580)
.++.++++.+|+.++.||..++
T Consensus 511 V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 511 VWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred EccCCCccccccCCCccccccccCcc
Confidence 4455788999999999997665
No 5
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.3e-100 Score=820.18 Aligned_cols=496 Identities=27% Similarity=0.519 Sum_probs=395.1
Q ss_pred ccCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCC
Q 008038 26 SYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTAS 105 (580)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~ 105 (580)
.+.+++++|+|+|++..+++||+++++++|||++|||+|++++||+|+|+|+|+ ++++++|||||+++.+++|+||+++
T Consensus 23 ~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~-L~~~ttiHWHGi~q~~~~~~DGv~~ 101 (543)
T PLN02991 23 AAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNH-LDEPFLISWSGIRNWRNSYQDGVYG 101 (543)
T ss_pred hccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCC-CCCCccEEECCcccCCCccccCCCC
Confidence 356789999999999999999999999999999999999999999999999999 6899999999999999999999998
Q ss_pred CccccCCCCCeEEEEEEc-CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCC-CCCcceEEEEeecccCchHHHHhh
Q 008038 106 ISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEQEVG 183 (580)
Q Consensus 106 ~~q~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~~~d~~~~~~~~~~~~ 183 (580)
+||||+||++|+|+|++ +++||||||+|.+.|+.+||+|+|||+++++++.|+ .+|+|++|+|+||++.+...+...
T Consensus 102 -tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~ 180 (543)
T PLN02991 102 -TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ 180 (543)
T ss_pred -CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH
Confidence 89999999999999999 699999999999999999999999999987655665 468899999999999886554433
Q ss_pred hcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCe
Q 008038 184 LSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNH 263 (580)
Q Consensus 184 ~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh 263 (580)
+.. +.. ...++.+||||++.+ +.++|++||+|||||||+|....+.|+|+||
T Consensus 181 ~~~-~~~-~~~~d~~liNG~~~~--------------------------~~~~v~~G~~yRlRiINa~~~~~~~~~idgH 232 (543)
T PLN02991 181 LDN-GGK-LPLPDGILINGRGSG--------------------------ATLNIEPGKTYRLRISNVGLQNSLNFRIQNH 232 (543)
T ss_pred hhc-CCC-CCCCCEEEEccCCCC--------------------------ceEEECCCCEEEEEEEeccCCeeEEEEECCC
Confidence 322 222 457899999999754 2699999999999999999999999999999
Q ss_pred eeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCceEEEEecCCCCCCCCCCCCCCC
Q 008038 264 KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPIT 343 (580)
Q Consensus 264 ~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~ 343 (580)
+|+|||+||.+++|..++++.|++||||||+|++++ ++|+|||++...... ......|||+|+++......+ .|..
T Consensus 233 ~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~-~~~~y~i~~~~~~~~-~~~~~~AIl~Y~g~~~~~~~~--~p~~ 308 (543)
T PLN02991 233 TMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ-PAKDYYIVVSSRFTS-KILITTGVLHYSNSAGPVSGP--IPDG 308 (543)
T ss_pred EEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCC-CCCcEEEEEeeccCC-CCcceEEEEEeCCCCCCCCCC--CCCC
Confidence 999999999999999999999999999999999998 678999998764332 345678999999754321111 1222
Q ss_pred CCCCCCC--ccccccccccccCCCCCCCC--------CcceEEEEEeeeeecCCeEEEEEcceeccCCCCCcchhhhccC
Q 008038 344 PRWDDYD--HSKSFSNKIFALMGSPKPPT--------NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGL 413 (580)
Q Consensus 344 p~~~~~~--~~~~~~~~~~~~~~~~~~p~--------~~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~ 413 (580)
|.-.... ........+..... ...|. ..++.+.+.......++...|+||+.+|..|..|.|.+.+..+
T Consensus 309 p~~~~~~~~~~~~~~~~l~p~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~ 387 (543)
T PLN02991 309 PIQLSWSFDQARAIKTNLTASGP-RPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKI 387 (543)
T ss_pred CccccccccchhhhhhcccCCCC-CCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcc
Confidence 1100000 00011111111111 11111 1223333332211123567899999999999999998877766
Q ss_pred CccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCC
Q 008038 414 KDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKF 493 (580)
Q Consensus 414 ~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~ 493 (580)
.+.|..+.-+. .+.+......+.++.++.|++|||+|+|.... .||||||||+|+||++|.|.|
T Consensus 388 ~g~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~G~G~f 451 (543)
T PLN02991 388 AGVYNPGSIPD----------QPTNGAIFPVTSVMQTDYKAFVEIVFENWEDI------VQTWHLDGYSFYVVGMELGKW 451 (543)
T ss_pred cCccccccccc----------cCCCCccccCCcEEEcCCCCEEEEEEeCCCCC------CCCeeeCCcceEEEEeCCCCC
Confidence 66653321110 01111123346678999999999999997766 899999999999999999999
Q ss_pred CcccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEE-----ecccccccCCCccccccC
Q 008038 494 TKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALGVETVGNIPNQALACG 568 (580)
Q Consensus 494 ~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~-----~~~~~~~~~~p~~~~~c~ 568 (580)
++.+...+|+.||++|||+.||++||++|||++||||.|+|||||..|+..||..++ .++.++++.+|+.+++||
T Consensus 452 ~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg 531 (543)
T PLN02991 452 SAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCG 531 (543)
T ss_pred CcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccc
Confidence 876566799999999999999999999999999999999999999999999999999 455578899999999998
Q ss_pred CCCc
Q 008038 569 LTGK 572 (580)
Q Consensus 569 ~~~~ 572 (580)
..++
T Consensus 532 ~~~~ 535 (543)
T PLN02991 532 RATG 535 (543)
T ss_pred cCCC
Confidence 6665
No 6
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.3e-100 Score=824.15 Aligned_cols=505 Identities=28% Similarity=0.511 Sum_probs=401.3
Q ss_pred cCCceEEEEEEEEEEEeCCCC--ceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC
Q 008038 27 YGSKTRHYKWEVEYMFWSPDC--KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA 104 (580)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~ 104 (580)
+.+.+++|+|+|++..++||| ..+++++|||++|||+|++++||+|+|+|+|+ ++++++|||||++|++++|+||++
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~-L~~~ttIHWHGl~q~~t~w~DGv~ 101 (596)
T PLN00044 23 AGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNA-LDEPLLLTWHGVQQRKSAWQDGVG 101 (596)
T ss_pred cCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeC-CCCCccEEECCccCCCCccccCCC
Confidence 677899999999999999999 55689999999999999999999999999999 789999999999999999999998
Q ss_pred CCccccCCCCCeEEEEEEc-CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCCC--CcceEEEEeecccCchHHHH
Q 008038 105 SISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY--DGEFNLLLSDWWHRSVHEQE 181 (580)
Q Consensus 105 ~~~q~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~~--d~e~~l~~~d~~~~~~~~~~ 181 (580)
+ +||||+||++|+|+|++ +++||||||+|++.|+++||+|+|||++++..+.|+.+ ++|.+|+++||++++...+.
T Consensus 102 ~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~ 180 (596)
T PLN00044 102 G-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALR 180 (596)
T ss_pred C-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHH
Confidence 8 99999999999999999 79999999999999999999999999998765566544 47999999999998865543
Q ss_pred hhhcCCCCCCCCCCceEEeCccCCC--CccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEE
Q 008038 182 VGLSSRPLRWIGEPQTLLINGRGQF--NCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLA 259 (580)
Q Consensus 182 ~~~~~~~~~~~~~~~~~liNG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~ 259 (580)
..... +.. ...++.++|||++.. +|.. .. .....++++|++||+|||||||++....+.|+
T Consensus 181 ~~l~~-g~~-~~~~d~~lING~g~~~~n~~~--------------~~-~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fs 243 (596)
T PLN00044 181 RALDA-GDL-LGAPDGVLINAFGPYQYNDSL--------------VP-PGITYERINVDPGKTYRFRVHNVGVATSLNFR 243 (596)
T ss_pred HHHhc-CCC-CCCCCceEEcccCccccCCcc--------------cc-CCCccceEEECCCCEEEEEEEEccCCceEEEE
Confidence 22222 211 456899999999764 2221 00 12233589999999999999999999999999
Q ss_pred EeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeec-CCC--CCCCCceEEEEecCCCCCCCC
Q 008038 260 VKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR-GRK--PATPPALTLLNYHPTSASKIP 336 (580)
Q Consensus 260 i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~-~~~--~~~~~~~ail~y~~~~~~~~~ 336 (580)
|+||+|+|||+||.+++|+.++.|.|++||||||+|++++.++++|||++... ..+ .+...+.|||+|.++......
T Consensus 244 IdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~ 323 (596)
T PLN00044 244 IQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASG 323 (596)
T ss_pred ECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCC
Confidence 99999999999999999999999999999999999999984345899998642 222 255678899999864332111
Q ss_pred CCCCCCCCC-CCCCCccccccccccccCC---CCCCCCCcceEEEEEeeee---------ecCCeEEEEEcceeccCCCC
Q 008038 337 LSPPPITPR-WDDYDHSKSFSNKIFALMG---SPKPPTNFHRRLTLLNTQN---------TINGFTKWAINNVSLTLPPT 403 (580)
Q Consensus 337 ~~~~p~~p~-~~~~~~~~~~~~~~~~~~~---~~~~p~~~~r~~~~~~~~~---------~~~~~~~~~iNg~~~~~p~~ 403 (580)
+ .|..|. +.+......+...++.... ..+++...++...+..... ...+...|+|||.+|..|++
T Consensus 324 ~--~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~ 401 (596)
T PLN00044 324 P--LPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPST 401 (596)
T ss_pred C--CCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCC
Confidence 1 244443 5555433323333332211 1112222222222222111 01245799999999999999
Q ss_pred CcchhhhccCCccCCCC---CCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecC
Q 008038 404 PYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHG 480 (580)
Q Consensus 404 p~l~~~~~~~~~~f~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG 480 (580)
|.|.+.++++.+.|+.+ .|| +.....++.++.++.|++|||+|+|.... .|||||||
T Consensus 402 p~L~a~~~~~~gv~~~~fp~~pp--------------~~~~~~~t~v~~~~~n~~VeiV~qn~~~~------~HP~HLHG 461 (596)
T PLN00044 402 PLMLAQIFNVPGVFKLDFPNHPM--------------NRLPKLDTSIINGTYKGFMEIIFQNNATN------VQSYHLDG 461 (596)
T ss_pred cchhhhhccCCCcccCCCCCCCC--------------ccccccCceEEEcCCCCEEEEEEeCCCCC------CCCeeEcC
Confidence 99987777777755332 222 11234467789999999999999997555 89999999
Q ss_pred CCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEE-----ecc-c
Q 008038 481 HDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALG-V 554 (580)
Q Consensus 481 ~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~-----~~~-~ 554 (580)
|+|+||+.|.|.|++.+...+|+.||++|||+.|+++||++|||++||||.|++||||+.|...||.++| .++ .
T Consensus 462 h~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~ 541 (596)
T PLN00044 462 YAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSN 541 (596)
T ss_pred ccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCcc
Confidence 9999999999999976667899999999999999999999999999999999999999999999999999 333 4
Q ss_pred ccccCCCccccccCCCCc
Q 008038 555 ETVGNIPNQALACGLTGK 572 (580)
Q Consensus 555 ~~~~~~p~~~~~c~~~~~ 572 (580)
++++.+|++++.||..++
T Consensus 542 ~~~~~pP~~~~~Cg~~~~ 559 (596)
T PLN00044 542 KTVLPIPDNAIFCGALSS 559 (596)
T ss_pred ccccCCCcccCccccccc
Confidence 678899999999997665
No 7
>PLN02792 oxidoreductase
Probab=100.00 E-value=1e-100 Score=822.31 Aligned_cols=497 Identities=29% Similarity=0.502 Sum_probs=398.3
Q ss_pred cccCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC
Q 008038 25 TSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA 104 (580)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~ 104 (580)
+.....+.+|+|+|++..+++||+++++++|||++|||+|++++||+|+|+|+|+ ++++++|||||+++++++|+||++
T Consensus 10 ~~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~-L~~~ttiHWHGl~q~~~~~~DGv~ 88 (536)
T PLN02792 10 FVKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHND-LDEPFLLSWNGVHMRKNSYQDGVY 88 (536)
T ss_pred HhhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeC-CCCCcCEeCCCcccCCCCccCCCC
Confidence 3556667899999999999999999999999999999999999999999999999 789999999999999999999998
Q ss_pred CCccccCCCCCeEEEEEEc-CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCC-CCcceEEEEeecccCchHHHHh
Q 008038 105 SISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSVHEQEV 182 (580)
Q Consensus 105 ~~~q~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~-~d~e~~l~~~d~~~~~~~~~~~ 182 (580)
+ +||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||.+++.++.|+. +|+|++|+++||++.+...+..
T Consensus 89 ~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~ 167 (536)
T PLN02792 89 G-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK 167 (536)
T ss_pred C-CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH
Confidence 8 89999999999999999 6999999999999999999999999998655445544 5889999999999988655433
Q ss_pred hhcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeC
Q 008038 183 GLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKN 262 (580)
Q Consensus 183 ~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~g 262 (580)
.+. .+......++.+||||++... .+.+++++||+|||||||+|....+.|+|+|
T Consensus 168 ~~~-~g~~~~~~~d~~liNG~~~~~------------------------~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~g 222 (536)
T PLN02792 168 ILD-GGRKLPLMPDGVMINGQGVSY------------------------VYSITVDKGKTYRFRISNVGLQTSLNFEILG 222 (536)
T ss_pred Hhh-ccCcCCCCCCEEEEeccCCCC------------------------cceEEECCCCEEEEEEEEcCCCceEEEEECC
Confidence 222 222213378999999998652 1379999999999999999999999999999
Q ss_pred eeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCceEEEEecCCCCCCCCCCCCCC
Q 008038 263 HKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPI 342 (580)
Q Consensus 263 h~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~ 342 (580)
|+|+|||+||++++|..+++|.|++||||||+|++++ ++|+|||++.....+ ....+.|||+|+++..... ..|.
T Consensus 223 H~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~-~~g~Y~i~a~~~~~~-~~~~~~ail~Y~g~~~~~~---~~p~ 297 (536)
T PLN02792 223 HQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQ-PPQNYSIVVSTRFIA-AKVLVSSTLHYSNSKGHKI---IHAR 297 (536)
T ss_pred cEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCC-CCceEEEEEEeccCC-CCCceEEEEEECCCCCCCC---CCCC
Confidence 9999999999999999999999999999999999988 578999999864332 3456789999986543211 1233
Q ss_pred CCCCCCCCccccccccccccCC---CCCCCCC--------cceEEEEEeeeeecCCeEEEEEcceeccCCCCCcchhhhc
Q 008038 343 TPRWDDYDHSKSFSNKIFALMG---SPKPPTN--------FHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKY 411 (580)
Q Consensus 343 ~p~~~~~~~~~~~~~~~~~~~~---~~~~p~~--------~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~ 411 (580)
.|.+++......+......... ....|.. .++++.+........+...|+|||.+|..|++|.|.+.++
T Consensus 298 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~ 377 (536)
T PLN02792 298 QPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHF 377 (536)
T ss_pred CCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhh
Confidence 3444444332222111111111 1111211 1233333322222234578999999999999999988776
Q ss_pred cCCccCCC----CCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEe
Q 008038 412 GLKDAFDQ----NGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLG 487 (580)
Q Consensus 412 ~~~~~f~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~ 487 (580)
++.+.|.. +.||..+ ....++.++.++.|++|||+|+|.... .||||||||+||||+
T Consensus 378 ~~~g~~~~~~~~~~p~~~~-------------~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg 438 (536)
T PLN02792 378 KIKGVFKVGSIPDKPRRGG-------------GMRLDTSVMGAHHNAFLEIIFQNREKI------VQSYHLDGYNFWVVG 438 (536)
T ss_pred ccCCCcCcccCccCCcccC-------------CCccCceEEEcCCCCEEEEEEECCCCC------CCCeeeCCCceEEEe
Confidence 66554421 1222111 123467789999999999999997665 899999999999999
Q ss_pred ecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEE-----ecccccccCCCc
Q 008038 488 RGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALGVETVGNIPN 562 (580)
Q Consensus 488 ~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~-----~~~~~~~~~~p~ 562 (580)
+|.|.|++.+...+|+.||++|||+.|+++||++|||++||||.|+||||+..|+..||.++| .++.++++.+|+
T Consensus 439 ~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~ 518 (536)
T PLN02792 439 INKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPK 518 (536)
T ss_pred ecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCc
Confidence 999999876667899999999999999999999999999999999999999999999999999 455678899999
Q ss_pred cccccCCCCc
Q 008038 563 QALACGLTGK 572 (580)
Q Consensus 563 ~~~~c~~~~~ 572 (580)
+.+.||..+.
T Consensus 519 ~~~~Cg~~~~ 528 (536)
T PLN02792 519 NALLCGRASN 528 (536)
T ss_pred ccCccccccC
Confidence 9999986655
No 8
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2e-100 Score=823.97 Aligned_cols=514 Identities=28% Similarity=0.538 Sum_probs=397.3
Q ss_pred HHHHHHHHHhhccccCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccc
Q 008038 13 TCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGI 92 (580)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~ 92 (580)
+|+.|++.......+.+.+++|+|+|++..+++||+++++++|||++|||+|++++||+|+|+|+|+ ++++++|||||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~-l~~~ttiHWHGi 87 (552)
T PLN02354 9 VLLCLAAAVALVVRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNN-LDEPFLLTWSGI 87 (552)
T ss_pred HHHHHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEEC-CCCCcccccccc
Confidence 4555555555555566789999999999999999999999999999999999999999999999999 689999999999
Q ss_pred cccCCCCCCCCCCCccccCCCCCeEEEEEEc-CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCC-CCcceEEEEe
Q 008038 93 RQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLS 170 (580)
Q Consensus 93 ~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~-~d~e~~l~~~ 170 (580)
+|.+++|+||+|+ |||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++...+.|+. +|+|++|+++
T Consensus 88 ~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~ 166 (552)
T PLN02354 88 QQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIG 166 (552)
T ss_pred cCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEee
Confidence 9999999999999 99999999999999998 7999999999999999999999999998865455553 4689999999
Q ss_pred ecccCchHHHHhhhcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeec
Q 008038 171 DWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIAST 250 (580)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNa 250 (580)
||++.+...+...+.. +.. .+.++.+||||+....| ....+.+++++||+|||||||+
T Consensus 167 Dw~~~~~~~~~~~~~~-g~~-~~~~d~~liNG~~~~~~--------------------~~~~~~~~v~~Gk~yRlRiINa 224 (552)
T PLN02354 167 DWYTKSHTALKKFLDS-GRT-LGRPDGVLINGKSGKGD--------------------GKDEPLFTMKPGKTYRYRICNV 224 (552)
T ss_pred eeccCCHHHHHHHHhc-CCC-CCCCCeEEEeCCcCCCC--------------------CCCceEEEECCCCEEEEEEEec
Confidence 9999986554432222 221 34689999999976511 1124579999999999999999
Q ss_pred CCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCceEEEEecCC
Q 008038 251 TALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPT 330 (580)
Q Consensus 251 g~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~~ail~y~~~ 330 (580)
|....+.|+|+||+|+|||+||++++|+.++++.|++||||||+|++++ ++|+|||++.....+ ......|+|+|.++
T Consensus 225 ~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~-~~g~Y~i~a~~~~~~-~~~~~~ail~Y~g~ 302 (552)
T PLN02354 225 GLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQ-APKDYYMVASTRFLK-KVLTTTGIIRYEGG 302 (552)
T ss_pred CCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCC-CCCcEEEEEeccccC-CCccEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999987 568999998743222 34567899999865
Q ss_pred CCCCCCCCCCCCCCC-CC-CCCccccccccccccCCCCCC-------CCCcceEEEEEeeeeecCCeEEEEEcceeccCC
Q 008038 331 SASKIPLSPPPITPR-WD-DYDHSKSFSNKIFALMGSPKP-------PTNFHRRLTLLNTQNTINGFTKWAINNVSLTLP 401 (580)
Q Consensus 331 ~~~~~~~~~~p~~p~-~~-~~~~~~~~~~~~~~~~~~~~~-------p~~~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p 401 (580)
.....+ ..|..|. +. ......++...+......+.+ ....++++.+.......++...|++||++|..|
T Consensus 303 ~~~~~~--~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p 380 (552)
T PLN02354 303 KGPASP--ELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDP 380 (552)
T ss_pred CCCCCC--CCCCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCC
Confidence 432111 1111111 00 000001111111111100100 012344444443222234567899999999999
Q ss_pred CCCcchhhhccCC-ccCC----CCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCe
Q 008038 402 PTPYLGSIKYGLK-DAFD----QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPW 476 (580)
Q Consensus 402 ~~p~l~~~~~~~~-~~f~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~ 476 (580)
+.|.|.+.+.++. +.++ ++.+|..+ .....++.++.++.|++|||+|+|.+.. .|||
T Consensus 381 ~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~------------~~~~~~~~v~~~~~~~~VeiVi~n~~~~------~HP~ 442 (552)
T PLN02354 381 ETPLKLAEYFGVADKVFKYDTIKDNPPAKI------------TKIKIQPNVLNITFRTFVEIIFENHEKS------MQSW 442 (552)
T ss_pred CCChHHhhhhcccCCccccCccccCCcccc------------CccccCCeeEEcCCCCEEEEEEeCCCCC------CCCC
Confidence 9999887764432 3332 11222110 0123456789999999999999998665 8999
Q ss_pred eecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEEe--ccc
Q 008038 477 HLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA--LGV 554 (580)
Q Consensus 477 HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~--~~~ 554 (580)
|||||+||||+++.|.|++.+...+|+.||++|||+.||++||++|||++||||.|+|||||..|+..||.++|. +++
T Consensus 443 HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~ 522 (552)
T PLN02354 443 HLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPE 522 (552)
T ss_pred cCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCc
Confidence 999999999999999998755567899999999999999999999999999999999999999999999988883 333
Q ss_pred ---ccccCCCccccccCCCCc
Q 008038 555 ---ETVGNIPNQALACGLTGK 572 (580)
Q Consensus 555 ---~~~~~~p~~~~~c~~~~~ 572 (580)
++++.+|++.+.|+..++
T Consensus 523 ~~~~~~~~~P~~~~~C~~~~~ 543 (552)
T PLN02354 523 RSLRDEYNMPENALLCGKVKG 543 (552)
T ss_pred cccCcCCCCCccccccccccC
Confidence 344568999999996665
No 9
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=6.8e-99 Score=808.46 Aligned_cols=495 Identities=30% Similarity=0.553 Sum_probs=384.4
Q ss_pred cCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCC
Q 008038 27 YGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASI 106 (580)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~ 106 (580)
+.+++++|+|+|++...++||+.+++++|||++|||+||+++||+|+|+|+|+ ++++++|||||+++.+++|+||+|+
T Consensus 22 ~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~-L~~~ttiHWHGl~~~~~~~~DGv~g- 99 (545)
T PLN02168 22 AFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNN-LTEPFLMTWNGLQLRKNSWQDGVRG- 99 (545)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeC-CCCCccEeeCCccCCCCCCcCCCCC-
Confidence 45789999999999999999999999999999999999999999999999999 6899999999999999999999999
Q ss_pred ccccCCCCCeEEEEEEc-CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCC-CCCcceEEEEeecccCchHHHHhhh
Q 008038 107 SQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEQEVGL 184 (580)
Q Consensus 107 ~q~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~~~d~~~~~~~~~~~~~ 184 (580)
+||||+||++|+|+|++ +++||||||||...|+.+||+|+|||+++++...|+ .+|+|++|+++||++.+...+....
T Consensus 100 tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 179 (545)
T PLN02168 100 TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASL 179 (545)
T ss_pred CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhh
Confidence 99999999999999999 699999999999999999999999999987655554 4589999999999998754433222
Q ss_pred cCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCee
Q 008038 185 SSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHK 264 (580)
Q Consensus 185 ~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~ 264 (580)
.. +.. ...++.+||||++.. .+++++++|++|||||||++....+.|+|+||+
T Consensus 180 ~~-g~~-~~~~d~~liNG~~~~-------------------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~ 232 (545)
T PLN02168 180 DN-GHS-LPNPDGILFNGRGPE-------------------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHD 232 (545)
T ss_pred hc-CCC-CCCCCEEEEeccCCC-------------------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcE
Confidence 22 222 346899999999743 127999999999999999999999999999999
Q ss_pred eEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCc---ceEEEEeecCCCCCCCCceEEEEecCCCCCCCCCCCCC
Q 008038 265 MVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSY---NYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPP 341 (580)
Q Consensus 265 ~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g---~y~l~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p 341 (580)
|+|||+||.+++|..++++.|++||||||+|++++.+.| +|||++.....+ ....+.|+|+|+++.... ..+.|
T Consensus 233 ~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~-~~~~~~ail~Y~~~~~~~--~~p~p 309 (545)
T PLN02168 233 MLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD-AYLGGVALIRYPNSPLDP--VGPLP 309 (545)
T ss_pred EEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC-CCcceEEEEEECCCCCCC--CCCCC
Confidence 999999999999999999999999999999999864434 899999864333 346778999998653321 11123
Q ss_pred CCCCCCCCCcccccccccc---ccCCCCCCC--------CCcceEEEEEeeeeecCCeEEEEEcceeccCCCCCcchhhh
Q 008038 342 ITPRWDDYDHSKSFSNKIF---ALMGSPKPP--------TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIK 410 (580)
Q Consensus 342 ~~p~~~~~~~~~~~~~~~~---~~~~~~~~p--------~~~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~ 410 (580)
..|.+.+.....++...+. .+......+ ...++++.+........+...|+|||.+|..|.+|.|.+.+
T Consensus 310 ~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~ 389 (545)
T PLN02168 310 LAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDH 389 (545)
T ss_pred CCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhh
Confidence 3344333322222211111 110001111 11234443332111123567899999999999999887665
Q ss_pred ccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecC
Q 008038 411 YGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGE 490 (580)
Q Consensus 411 ~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~ 490 (580)
+++.+.+... .| . ..+.+.....++.++.++.|++|+|+|+|.... .||||||||+||||+++.
T Consensus 390 ~~~~~~~~~~----~~----~--~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~g~ 453 (545)
T PLN02168 390 FQLNDTIIPG----MF----P--VYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFS------LESYHIDGYNFFVVGYGF 453 (545)
T ss_pred cccccccccC----CC----c--cCCCcCccccCceEEEecCCCEEEEEEeCCCCC------CCCeeeCCCceEEEECCC
Confidence 5443222111 00 0 000011122346789999999999999997655 899999999999999999
Q ss_pred CCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEEec------c-----cccccC
Q 008038 491 GKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL------G-----VETVGN 559 (580)
Q Consensus 491 g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~------~-----~~~~~~ 559 (580)
|.|++.+...+|+.||++|||+.||++||++|||++||||.|+|||||.+|...||.+++.+ . .++++.
T Consensus 454 g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~ 533 (545)
T PLN02168 454 GAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENP 533 (545)
T ss_pred CCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccC
Confidence 99987555679999999999999999999999999999999999999977777777666633 1 345678
Q ss_pred CCccccccCC
Q 008038 560 IPNQALACGL 569 (580)
Q Consensus 560 ~p~~~~~c~~ 569 (580)
+|+.++.||.
T Consensus 534 ~P~~~~~cg~ 543 (545)
T PLN02168 534 IPGNVIRCGK 543 (545)
T ss_pred CChhhccccc
Confidence 9999999983
No 10
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2e-98 Score=815.05 Aligned_cols=511 Identities=35% Similarity=0.639 Sum_probs=393.7
Q ss_pred CceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCcc
Q 008038 29 SKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQ 108 (580)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q 108 (580)
+++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|+ ++++++|||||+++.+++|+||+|++||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~-l~~~tsiHwHGl~q~~~~~~DGv~~vTq 79 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNN-VQYNVTIHWHGVRQLRNGWADGPAYITQ 79 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeC-CCCCeeEecCCCCCCCCCCCCCCccccc
Confidence 468999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred ccCCCCCeEEEEEEc-CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCC-CCCcceEEEEeecccCchHHHHhhhcC
Q 008038 109 CPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEQEVGLSS 186 (580)
Q Consensus 109 ~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~~~d~~~~~~~~~~~~~~~ 186 (580)
|+|+||++|+|+|++ +++||||||||...+. .||+|+|||+++.+...|+ .+|+|++|+++||++++....+.....
T Consensus 80 ~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 158 (539)
T TIGR03389 80 CPIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQ 158 (539)
T ss_pred CCcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHh
Confidence 999999999999999 6999999999987665 5899999999987655554 358999999999999887665544333
Q ss_pred CCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCeeeE
Q 008038 187 RPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMV 266 (580)
Q Consensus 187 ~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~ 266 (580)
.+.. +..++.++|||+..+. + .|+ ....+.+++++||+|||||||+|....+.|+|+||+|+
T Consensus 159 ~~~~-~~~~d~~liNG~~~~~------~------~~~-----~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~ 220 (539)
T TIGR03389 159 TGGA-PNVSDAYTINGHPGPL------Y------NCS-----SKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLT 220 (539)
T ss_pred cCCC-CCccceEEECCCcCCC------C------CCC-----CCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEE
Confidence 2222 4467899999997541 0 232 12345899999999999999999999999999999999
Q ss_pred EEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCC---CCCCceEEEEecCCCCCCCCCCCCCCC
Q 008038 267 VVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASKIPLSPPPIT 343 (580)
Q Consensus 267 via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~---~~~~~~ail~y~~~~~~~~~~~~~p~~ 343 (580)
|||+||.+++|+.++++.|++||||||+|++++ ++|+|||++.....+. ......|+|+|.+......+. .+..
T Consensus 221 VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~-~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~--~~~~ 297 (539)
T TIGR03389 221 VVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQ-SPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPI--LPTL 297 (539)
T ss_pred EEEeCCcccCceEeCeEEecCCCEEEEEEECCC-CCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCC--CCCC
Confidence 999999999999999999999999999999987 5689999998654332 235678999998644322121 1122
Q ss_pred CCCCCCCccccccccccccC-C--CCCCCCCcceEEEEEeeeee-----------cCCeEEEEEcceeccCCCCCcchhh
Q 008038 344 PRWDDYDHSKSFSNKIFALM-G--SPKPPTNFHRRLTLLNTQNT-----------INGFTKWAINNVSLTLPPTPYLGSI 409 (580)
Q Consensus 344 p~~~~~~~~~~~~~~~~~~~-~--~~~~p~~~~r~~~~~~~~~~-----------~~~~~~~~iNg~~~~~p~~p~l~~~ 409 (580)
|.+++......+...+..+. + ....+..+++++.+....+. ....+.|+||+++|..|..|.|.+.
T Consensus 298 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~ 377 (539)
T TIGR03389 298 PAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAH 377 (539)
T ss_pred CCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhh
Confidence 22222211111111111111 0 11122345666554443211 1234789999999999999988776
Q ss_pred hccCCccCC---CCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEE
Q 008038 410 KYGLKDAFD---QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVL 486 (580)
Q Consensus 410 ~~~~~~~f~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv 486 (580)
+.++.+.+. ++.+|..+. ++....+.+.....++.++.++.|++|+++|+|.+.+ ....||||||||+|+||
T Consensus 378 ~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~---~~~~HP~HLHGh~F~Vl 452 (539)
T TIGR03389 378 YFGISGVFTTDFPANPPTKFN--YTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSIL---GSENHPIHLHGYNFFVV 452 (539)
T ss_pred hcccCCccccCCccCCCcccc--CCCCCcccccccccCceEEEecCCCEEEEEEecCCcC---CCCCCcEeEcCCceEEE
Confidence 655444322 223343331 1111111111233467789999999999999996422 12279999999999999
Q ss_pred eecCCCCCc-ccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEEec-----ccccccCC
Q 008038 487 GRGEGKFTK-EDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL-----GVETVGNI 560 (580)
Q Consensus 487 ~~~~g~~~~-~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~-----~~~~~~~~ 560 (580)
+++.|.|+. .+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+ +.++++++
T Consensus 453 g~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~ 532 (539)
T TIGR03389 453 GTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPP 532 (539)
T ss_pred EeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCC
Confidence 999998875 233468999999999999999999999999999999999999999999999999955 34578999
Q ss_pred Ccccccc
Q 008038 561 PNQALAC 567 (580)
Q Consensus 561 p~~~~~c 567 (580)
|+.++.|
T Consensus 533 p~~~~~c 539 (539)
T TIGR03389 533 PSDLPSC 539 (539)
T ss_pred CccCCCC
Confidence 9999999
No 11
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-92 Score=751.30 Aligned_cols=514 Identities=39% Similarity=0.677 Sum_probs=413.9
Q ss_pred hhccccCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCC
Q 008038 22 VFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWAD 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~D 101 (580)
.....+.++++.|+|++++..+.++|.+++++++||++|||+|+|++||+|.|+|+|+ ++++++|||||+++..++|+|
T Consensus 19 ~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~-~~~~~sihWhGv~q~kn~w~D 97 (563)
T KOG1263|consen 19 VFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNR-LDEPFSIHWHGVRQRKNPWQD 97 (563)
T ss_pred HHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeC-CCCceEEEeccccccCCcccc
Confidence 3344578999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred CCCCCccccCCCCCeEEEEEEc-CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCC-CCcceEEEEeecccC-chH
Q 008038 102 GTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHR-SVH 178 (580)
Q Consensus 102 G~~~~~q~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~-~d~e~~l~~~d~~~~-~~~ 178 (580)
| +.+|||||+||++|+|+|++ +|.||||||+|+++|+++|++|+|||.++...+.|+. +|+|++|+++||+.+ ...
T Consensus 98 G-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~ 176 (563)
T KOG1263|consen 98 G-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHK 176 (563)
T ss_pred C-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHH
Confidence 9 99999999999999999999 6999999999999999999999999999987767777 489999999999996 555
Q ss_pred HHHhhhcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEE
Q 008038 179 EQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNL 258 (580)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~ 258 (580)
.+...... +...+..+|..+|||+..+ + | .| .+++++++||+|||||+|+|....+.|
T Consensus 177 ~l~~~~~~-~~~~p~~~D~~~iNg~~g~---~---~------~~---------~~~l~v~pGktY~lRiiN~g~~~~l~F 234 (563)
T KOG1263|consen 177 NLKNFLDR-TGALPNPSDGVLINGRSGF---L---Y------NC---------TPTLTVEPGKTYRLRIINAGLNTSLNF 234 (563)
T ss_pred HHHHhhcc-CCCCCCCCCceEECCCCCc---c---c------Cc---------eeEEEEcCCCEEEEEEEccccccceEE
Confidence 54444443 3333445899999999865 1 1 12 358999999999999999999999999
Q ss_pred EEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCC---CCCCceEEEEecCCCCCCC
Q 008038 259 AVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASKI 335 (580)
Q Consensus 259 ~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~---~~~~~~ail~y~~~~~~~~ 335 (580)
+|.+|+|+||++||.+++|+.++++.|.||||+||+|++++ .+++|+|.+.....+. ...+..++++|.+......
T Consensus 235 ~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq-~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s 313 (563)
T KOG1263|consen 235 SIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQ-SPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPAS 313 (563)
T ss_pred EECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCC-CCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCc
Confidence 99999999999999999999999999999999999999999 4569999998755542 2567789999986222111
Q ss_pred CC-CCCCCCCCCCCCCccccccccccccCC---CCCCCCCcceEEEEEe--------eeeecCCeEEEEEcceeccCCCC
Q 008038 336 PL-SPPPITPRWDDYDHSKSFSNKIFALMG---SPKPPTNFHRRLTLLN--------TQNTINGFTKWAINNVSLTLPPT 403 (580)
Q Consensus 336 ~~-~~~p~~p~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~r~~~~~~--------~~~~~~~~~~~~iNg~~~~~p~~ 403 (580)
.. ...+.+|...+......+...++.... ..+.|...++...+.. .....++...++||+.+|..|++
T Consensus 314 ~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~t 393 (563)
T KOG1263|consen 314 EKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKT 393 (563)
T ss_pred ccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCC
Confidence 11 112234444454444445444444432 1222333333333322 22223568899999999999999
Q ss_pred CcchhhhccCCc-cCCC---CCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeec
Q 008038 404 PYLGSIKYGLKD-AFDQ---NGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLH 479 (580)
Q Consensus 404 p~l~~~~~~~~~-~f~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlH 479 (580)
|.+.+.++...+ .+.. ..||..+ ++. .++.++.++.++.+++||++|+|.+.. ....||||||
T Consensus 394 p~~l~~~~~~~~~~~~~d~p~~P~~~~--~~~--------~~~~~t~v~~~~~~~~veIVlqN~~~~---~~~~hp~HLH 460 (563)
T KOG1263|consen 394 PSLLAAYFKNIPGYFTNDFPDKPPIKF--DYT--------GPTLGTSVMKLEFNSFVEIVLQNTSTG---TQENHPNHLH 460 (563)
T ss_pred chhhhhhhccCCccccCccCCCCcccc--CCc--------cccccceEEEeecCCEEEEEEeCCccc---cCCCCcccee
Confidence 987766644443 2211 2222111 111 147889999999999999999998765 3446999999
Q ss_pred CCCeEEEeecCCCCCc-ccc-cccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEEeccccc-
Q 008038 480 GHDFWVLGRGEGKFTK-EDE-KKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVET- 556 (580)
Q Consensus 480 G~~F~vv~~~~g~~~~-~~~-~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~~- 556 (580)
||.|+|++.+.|.|++ .+. +.+|+.+|+.||||.||||||++|||.|||||.|++|||+.+|...||.++|.|...+
T Consensus 461 G~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~ 540 (563)
T KOG1263|consen 461 GYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEE 540 (563)
T ss_pred ceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCc
Confidence 9999999999999998 234 7899999999999999999999999999999999999999999999999999876643
Q ss_pred ----ccCCCccccccCCCCcC
Q 008038 557 ----VGNIPNQALACGLTGKR 573 (580)
Q Consensus 557 ----~~~~p~~~~~c~~~~~~ 573 (580)
+..+|.+.+.||.-+..
T Consensus 541 ~~~~~~~~P~~~~~cg~~~~~ 561 (563)
T KOG1263|consen 541 SLSSEYPPPKNLPKCGRASGI 561 (563)
T ss_pred cCCcCCCCCCCcccccccCCc
Confidence 34799999999987753
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=8.5e-92 Score=760.20 Aligned_cols=491 Identities=32% Similarity=0.595 Sum_probs=373.5
Q ss_pred EEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCC
Q 008038 33 HYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPIN 112 (580)
Q Consensus 33 ~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~ 112 (580)
.|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|+|..++++|||||+++.+++|+||+|++|||+|+
T Consensus 10 ~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~ 89 (538)
T TIGR03390 10 DHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIP 89 (538)
T ss_pred cEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCC
Confidence 48999999999999999999999999999999999999999999999656899999999999999999999999999999
Q ss_pred CCCeEEEEEEc--CCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCCCCcceEEEEeecccCchHHHHhhhcCCCCC
Q 008038 113 PGETYLYRFKV--DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLR 190 (580)
Q Consensus 113 pG~~~~y~f~~--~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~~~d~~~~~~~~~~~~~~~~~~~ 190 (580)
||++|+|+|++ +++||||||||.+.|+. ||+|+|||+++.. .++.||+|++|+|+||+++...++...+...+..
T Consensus 90 PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~--~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~ 166 (538)
T TIGR03390 90 PGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEP--PPYKYDDERILLVSDFFSATDEEIEQGLLSTPFT 166 (538)
T ss_pred CCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCc--cCCCccCcEEEEEeCCCCCCHHHHHhhhhccCCc
Confidence 99999999997 58999999999999986 5999999998643 3667899999999999999877655444433323
Q ss_pred CCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCee-eEEEE
Q 008038 191 WIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHK-MVVVE 269 (580)
Q Consensus 191 ~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~-~~via 269 (580)
+..+++.++|||++.+.|... .++ ....+..+.++|++||+|||||||+|....+.|+|+||+ |+|||
T Consensus 167 ~~~~~d~~liNG~~~~~~~~~---------~~~--~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa 235 (538)
T TIGR03390 167 WSGETEAVLLNGKSGNKSFYA---------QIN--PSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE 235 (538)
T ss_pred cCCCCceEEECCccccccccc---------ccc--CCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE
Confidence 345678999999977633110 000 111234568999999999999999999999999999999 99999
Q ss_pred ECCcccCceeeeeEEEcCCceEEEEEEeCCCC------CcceEEEEeecCCCCCCCCceEEEEecCCCCCCCCCCCCCCC
Q 008038 270 ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDP------SYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPIT 343 (580)
Q Consensus 270 ~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~------~g~y~l~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~ 343 (580)
+||++++|+.++.+.|++||||||+|++++.. +++||||+.....+ +.....|||+|.++.....+. .|..
T Consensus 236 ~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~-~~~~~~aiL~Y~~~~~~~~~~--~p~~ 312 (538)
T TIGR03390 236 ADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP-KVYRGYAVLRYRSDKASKLPS--VPET 312 (538)
T ss_pred eCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC-CcceEEEEEEeCCCCCCCCCC--CCCC
Confidence 99999999999999999999999999998742 48999999765433 445678999997543322211 1111
Q ss_pred CCCC---CCCccccccccccccCCC----CCCCCCcceEEEEEeeeee--cCCeEEEEEcceeccC--CCCCcchhhhcc
Q 008038 344 PRWD---DYDHSKSFSNKIFALMGS----PKPPTNFHRRLTLLNTQNT--INGFTKWAINNVSLTL--PPTPYLGSIKYG 412 (580)
Q Consensus 344 p~~~---~~~~~~~~~~~~~~~~~~----~~~p~~~~r~~~~~~~~~~--~~~~~~~~iNg~~~~~--p~~p~l~~~~~~ 412 (580)
+... ......++ .+...... .+++..+++++.+...... .++...|++||++|.. |..|.|.....+
T Consensus 313 ~~~~~~~~~~~~~~~--~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~ 390 (538)
T TIGR03390 313 PPLPLPNSTYDWLEY--ELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYEN 390 (538)
T ss_pred CCCCccCcchhhhhe--eeEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcC
Confidence 1111 11011111 11111110 1223345777777665432 2456899999999986 688888766532
Q ss_pred CCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCC--CCCCCCCCeeecCCCeEEEeecC
Q 008038 413 LKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIR--PNLSEIHPWHLHGHDFWVLGRGE 490 (580)
Q Consensus 413 ~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~--~~~~~~HP~HlHG~~F~vv~~~~ 490 (580)
. + ...++ + +. ..........+.++.++.|++|+|+|+|..... ......||||||||+|+||++|.
T Consensus 391 ~---~-~~~~~--~----~~--~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~ 458 (538)
T TIGR03390 391 G---L-PATPN--Y----TA--ALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGD 458 (538)
T ss_pred C---C-CcCCC--c----cc--ccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccc
Confidence 1 1 00000 1 00 000001122345688999999999999964210 01123899999999999999999
Q ss_pred CCCCc-ccccccCCCCCCccceEEeC----------CCcEEEEEEEecCceeeEEeeecchhhhcccEEEEeccc
Q 008038 491 GKFTK-EDEKKFNLKNPPLKNTAVIF----------PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 554 (580)
Q Consensus 491 g~~~~-~~~~~~~~~~p~~rDTv~vp----------p~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 554 (580)
|.|++ .+...+++.||++|||+.|| +++|++|||++||||.|+|||||.+|+.+||+++|.+..
T Consensus 459 G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 459 GEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred cccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 99986 22346788999999999996 789999999999999999999999999999999998754
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=7e-80 Score=665.80 Aligned_cols=421 Identities=30% Similarity=0.482 Sum_probs=325.4
Q ss_pred EEEEEEEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccC
Q 008038 32 RHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPI 111 (580)
Q Consensus 32 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i 111 (580)
++|+|++++..++++|+.+.+|+|||++|||+||+++||+|+|+|+|+ ++++++|||||+++. +++||+|+++||+|
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~-l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I 122 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNT-LPEDTSIHWHGILLP--FQMDGVPGVSFAGI 122 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcC-CCCCceEEcCCCcCC--ccccCCCccccccc
Confidence 789999999999999999999999999999999999999999999999 789999999999985 67999999999999
Q ss_pred CCCCeEEEEEEcCCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCCCCcceEEEEeecccCchHHHHhhhcCC----
Q 008038 112 NPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSR---- 187 (580)
Q Consensus 112 ~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~~~d~~~~~~~~~~~~~~~~---- 187 (580)
+||++|+|+|++.++||||||||...|+..||+|+|||+++.. .|+.||+|++|+|+||++.+..+++..+...
T Consensus 123 ~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~--~p~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~ 200 (587)
T TIGR01480 123 APGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP--DPVRADREHVVLLSDWTDLDPAALFRKLKVMAGHD 200 (587)
T ss_pred CCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECCCcc--ccCCCCceEEEEeeecccCCHHHHHHhhhcccccc
Confidence 9999999999999999999999999999999999999997643 4678899999999999987765554332210
Q ss_pred -----------------CCC--------C-------------CCCCceEEeCccCCCCccccccccCCCcccccccCCCC
Q 008038 188 -----------------PLR--------W-------------IGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQ 229 (580)
Q Consensus 188 -----------------~~~--------~-------------~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (580)
+.. | .+....+||||+...
T Consensus 201 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~----------------------- 257 (587)
T TIGR01480 201 NYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA----------------------- 257 (587)
T ss_pred cccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCC-----------------------
Confidence 000 0 001123567766532
Q ss_pred CCceEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEE
Q 008038 230 CAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 309 (580)
Q Consensus 230 ~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~ 309 (580)
..+++.+++|++|||||||+|+.+.+.|+|+||+|+||++||++++|+.++.+.|++||||||+|+.++ .|.|+|.+
T Consensus 258 -~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~--~g~~~i~a 334 (587)
T TIGR01480 258 -GNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG--DDAFTIFA 334 (587)
T ss_pred -CCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC--CceEEEEE
Confidence 223689999999999999999999999999999999999999999999999999999999999999875 57899998
Q ss_pred eecCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCc-------------------cc-----------c---c-
Q 008038 310 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDH-------------------SK-----------S---F- 355 (580)
Q Consensus 310 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~-------------------~~-----------~---~- 355 (580)
...+. ...+.++|.+.+......++..++......+... .. + .
T Consensus 335 ~~~~~---~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (587)
T TIGR01480 335 QDSDR---TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMA 411 (587)
T ss_pred EecCC---CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCcccccc
Confidence 76543 3566778887643211111111110011101000 00 0 0
Q ss_pred --------------------------------------------cccccccCCCCCCCCCcceEEEEEeeeeecCCeEEE
Q 008038 356 --------------------------------------------SNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 391 (580)
Q Consensus 356 --------------------------------------------~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~ 391 (580)
...+..+.+ ..++..++|++.+....+ ...+.|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~-~~~~~~p~r~~~~~L~g~--m~~~~w 488 (587)
T TIGR01480 412 MDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFP-PPDGRAPGREIELHLTGN--MERFAW 488 (587)
T ss_pred ccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhcccccc-ccCcCCCCceEEEEEcCC--CceeEE
Confidence 000000000 011224566666655432 235679
Q ss_pred EEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCC
Q 008038 392 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLS 471 (580)
Q Consensus 392 ~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~ 471 (580)
+|||+.|.. .+| +.++.|+.|+|+|.|.+.+
T Consensus 489 tiNG~~~~~--------------------~~p------------------------l~v~~Gervri~l~N~t~~----- 519 (587)
T TIGR01480 489 SFDGEAFGL--------------------KTP------------------------LRFNYGERLRVVLVNDTMM----- 519 (587)
T ss_pred EECCccCCC--------------------CCc------------------------eEecCCCEEEEEEECCCCC-----
Confidence 999986521 111 6799999999999998888
Q ss_pred CCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCceeeEEeeecchhhhcccEEEEe
Q 008038 472 EIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLA 551 (580)
Q Consensus 472 ~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~ 551 (580)
.|||||||+.|+++..+ |.+ +.++||+.|+||+++.++|+++|||.|+||||++.|++.|||+.|.
T Consensus 520 -~HpmHlHG~~f~v~~~~-G~~------------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~ 585 (587)
T TIGR01480 520 -AHPIHLHGMWSELEDGQ-GEF------------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVT 585 (587)
T ss_pred -CcceeEcCceeeeecCC-Ccc------------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEE
Confidence 99999999999998652 322 3678999999999999999999999999999999999999999997
Q ss_pred c
Q 008038 552 L 552 (580)
Q Consensus 552 ~ 552 (580)
+
T Consensus 586 v 586 (587)
T TIGR01480 586 V 586 (587)
T ss_pred e
Confidence 6
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=5.5e-74 Score=615.93 Aligned_cols=411 Identities=24% Similarity=0.352 Sum_probs=296.5
Q ss_pred eEEEEEEEEEEEeCCCCce-eEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccc
Q 008038 31 TRHYKWEVEYMFWSPDCKE-SIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQC 109 (580)
Q Consensus 31 ~~~~~l~~~~~~~~~~g~~-~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~ 109 (580)
...|+|++++...++++.. ..+|+|||++|||+||+++||+|+|+|+|+ ++++++|||||+++.+ .+||+| ||
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~-L~~~ttiHwHGl~~~~--~~DG~p---q~ 118 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQ-LPEETTLHWHGLEVPG--EVDGGP---QG 118 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEEC-CCCCccEEcccccCCC--ccCCCC---CC
Confidence 3469999999999976654 469999999999999999999999999999 7899999999999974 599987 89
Q ss_pred cCCCCCeEEEEEEcC-CCcceeeecCc----chhhccccEEEEEEEcCCCCCC--CCCCC-cceEEEEeecccCchHHHH
Q 008038 110 PINPGETYLYRFKVD-KAGTYFYHGHL----GMQRSAGLYGSLIVDVADGEKE--PFHYD-GEFNLLLSDWWHRSVHEQE 181 (580)
Q Consensus 110 ~i~pG~~~~y~f~~~-~~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~--p~~~d-~e~~l~~~d~~~~~~~~~~ 181 (580)
+|.||++|+|+|+++ ++||||||||. +.|+.+||+|+|||+++.+... |..|+ .|++|+++||+++......
T Consensus 119 ~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~ 198 (523)
T PRK10965 119 IIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQID 198 (523)
T ss_pred CCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCcee
Confidence 999999999999995 58999999994 7999999999999999866432 33343 6899999999997654432
Q ss_pred hhhcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEE-
Q 008038 182 VGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAV- 260 (580)
Q Consensus 182 ~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i- 260 (580)
.............++.++|||+.++ .+.+ ++++|||||||+|..+.+.|++
T Consensus 199 ~~~~~~~~~~g~~gd~~lVNG~~~p---------------------------~~~v-~~~~~RlRliNas~~r~~~l~~~ 250 (523)
T PRK10965 199 YQLDVMTAAVGWFGDTLLTNGAIYP---------------------------QHAA-PRGWLRLRLLNGCNARSLNLATS 250 (523)
T ss_pred ccccccccccCccCCeEEECCcccc---------------------------eeec-CCCEEEEEEEeccCCceEEEEEc
Confidence 2111100011235789999999876 4666 4679999999999999999998
Q ss_pred eCeeeEEEEECCccc-CceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCC----CCCCceEEEEecCCCCCCC
Q 008038 261 KNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP----ATPPALTLLNYHPTSASKI 335 (580)
Q Consensus 261 ~gh~~~via~DG~~v-~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~----~~~~~~ail~y~~~~~~~~ 335 (580)
++|+|+|||.||+++ +|..+++|.|+|||||||+|++++ ++.|.+......... .......++++......
T Consensus 251 dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~--~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-- 326 (523)
T PRK10965 251 DGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD--GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLIS-- 326 (523)
T ss_pred CCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC--CceEEEEEecccCcccccccCCCceeEEEEeccCcC--
Confidence 899999999999987 899999999999999999999986 678888775332211 01123455555532111
Q ss_pred CCCCCCCCCCCCCCCccccccccccccCCCCCCCCCcceEEEEEeeee-----------ec-----C-------------
Q 008038 336 PLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQN-----------TI-----N------------- 386 (580)
Q Consensus 336 ~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~-----------~~-----~------------- 386 (580)
...+ +|. .+....+.+.......|++.+..... .. .
T Consensus 327 ~~~~---~P~------------~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (523)
T PRK10965 327 ASGT---LPD------------SLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGH 391 (523)
T ss_pred CCCc---CCh------------hhccCCCCCcccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccc
Confidence 0001 110 00000000000001123332221000 00 0
Q ss_pred -------------C-----eEEEEEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeE
Q 008038 387 -------------G-----FTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVY 448 (580)
Q Consensus 387 -------------~-----~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (580)
+ ...|+|||+.|. ..++ ..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~-------------------~~~~------------------------~~ 428 (523)
T PRK10965 392 GNMDHMNHGAADAGPAFDFHHANKINGKAFD-------------------MNKP------------------------MF 428 (523)
T ss_pred ccccccccccccccccccccccccCCCeECC-------------------CCCc------------------------ce
Confidence 0 011355555442 1111 16
Q ss_pred EccCCcEEEEEEEcCCC-CCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe-
Q 008038 449 MLGLNTTVDVILQNANA-IRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA- 526 (580)
Q Consensus 449 ~~~~G~~v~~~l~N~~~-~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a- 526 (580)
.++.|++++|+|.|.+. + .|||||||++|+|+++++..- ....+.|||||.|++ +.+.|++++
T Consensus 429 ~~~~G~~e~w~i~N~~~~~------~Hp~HlHg~~F~Vl~~~g~~~--------~~~~~~wkDTv~v~~-~~~~i~~~f~ 493 (523)
T PRK10965 429 AAKKGQYERWVISGVGDMM------LHPFHIHGTQFRILSENGKPP--------AAHRAGWKDTVRVEG-GRSEVLVKFD 493 (523)
T ss_pred ecCCCCEEEEEEEeCCCCC------ccCeEEeCcEEEEEEecCCCC--------CccccccccEEEECC-cEEEEEEEec
Confidence 79999999999999874 5 799999999999999954211 122458999999987 666666555
Q ss_pred ---cCceeeEEeeecchhhhcccEEEEec
Q 008038 527 ---DNPGAWAFHCHIEPHFHIGMGVVLAL 552 (580)
Q Consensus 527 ---dnpG~w~~HCHil~H~d~GM~~~~~~ 552 (580)
+++|.||||||||+|||.|||+.|.|
T Consensus 494 ~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 494 HDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred CCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 46789999999999999999999976
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=7.5e-72 Score=594.60 Aligned_cols=398 Identities=19% Similarity=0.237 Sum_probs=291.3
Q ss_pred EEEEEEEEEEeCCC-CceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccC
Q 008038 33 HYKWEVEYMFWSPD-CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPI 111 (580)
Q Consensus 33 ~~~l~~~~~~~~~~-g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i 111 (580)
.++|+++......+ |..+.+|+|||++|||+||+++||+|+|+|+|+ ++++++|||||+++..+ .+||+ +++|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~-L~~~ttiHwHGl~~~~~-~~~g~----~~~I 120 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNR-LTEPVSMTVSGLQVPGP-LMGGP----ARMM 120 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeC-CCCCCceeECCccCCCC-CCCCc----cccC
Confidence 37899998888866 467889999999999999999999999999999 78999999999999764 56775 4789
Q ss_pred CCCCeEEEEEEc-CCCcceeeecCc----chhhccccEEEEEEEcCCCCCCCC--CCC-cceEEEEeecccCchHHHHhh
Q 008038 112 NPGETYLYRFKV-DKAGTYFYHGHL----GMQRSAGLYGSLIVDVADGEKEPF--HYD-GEFNLLLSDWWHRSVHEQEVG 183 (580)
Q Consensus 112 ~pG~~~~y~f~~-~~~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~p~--~~d-~e~~l~~~d~~~~~~~~~~~~ 183 (580)
.||++|+|+|++ +++||||||||. ..|+.+||+|+|||+++.+...++ .|+ .|++|+++||.++........
T Consensus 121 ~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~ 200 (471)
T PRK10883 121 SPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN 200 (471)
T ss_pred CCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc
Confidence 999999999998 569999999994 459999999999999976543333 344 499999999998764432211
Q ss_pred hcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEE-eC
Q 008038 184 LSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAV-KN 262 (580)
Q Consensus 184 ~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i-~g 262 (580)
....+ ...++.++|||+..+ .+++++| +|||||||+|..+.+.|+| ++
T Consensus 201 ~~~~~---g~~gd~~lvNG~~~p---------------------------~~~v~~~-~~RlRliNas~~~~~~l~l~d~ 249 (471)
T PRK10883 201 EPGSG---GFVGDTLLVNGVQSP---------------------------YVEVSRG-WVRLRLLNASNARRYQLQMSDG 249 (471)
T ss_pred ccccC---CccCCeeEECCccCC---------------------------eEEecCC-EEEEEEEEccCCceEEEEEcCC
Confidence 01111 236789999999877 6888874 8999999999999999999 89
Q ss_pred eeeEEEEECCccc-CceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCC----CCC------CceEEEEecCCC
Q 008038 263 HKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP----ATP------PALTLLNYHPTS 331 (580)
Q Consensus 263 h~~~via~DG~~v-~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~----~~~------~~~ail~y~~~~ 331 (580)
|+|+|||.||+++ +|..++++.|+|||||||+|++++ ++.+.|++....... ... ....++++....
T Consensus 250 ~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (471)
T PRK10883 250 RPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN--GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTG 327 (471)
T ss_pred CeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC--CceEEEECCCccccccccccccCCccccccceeEEEEccc
Confidence 9999999997766 899999999999999999999976 556766653211000 000 011223332111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCcceEEEEEeeeeecCCeEEEEEcceeccCCCCCcchhhhc
Q 008038 332 ASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKY 411 (580)
Q Consensus 332 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~ 411 (580)
.......+ .|. .+... ...+....+++.+.... ..|.|||+.|...
T Consensus 328 ~~~~~~~~---~p~------------~l~~~---~~~~~~~~~~~~~~l~~------~~~~INg~~~~~~---------- 373 (471)
T PRK10883 328 LLPLVTDN---LPM------------RLLPD---EIMEGSPIRSREISLGD------DLPGINGALWDMN---------- 373 (471)
T ss_pred cccCCCCc---CCh------------hhcCC---CCCCCCCcceEEEEecC------CcCccCCcccCCC----------
Confidence 00000000 010 00000 01111223333333321 1467999876321
Q ss_pred cCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCC
Q 008038 412 GLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEG 491 (580)
Q Consensus 412 ~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g 491 (580)
+++ ..++.|++++|+|.|. + .|||||||+.|||+++++.
T Consensus 374 ---------~~~------------------------~~~~~g~~e~W~~~n~--~------~HP~HlHg~~FqVl~~~G~ 412 (471)
T PRK10883 374 ---------RID------------------------VTAQQGTWERWTVRAD--M------PQAFHIEGVMFLIRNVNGA 412 (471)
T ss_pred ---------cce------------------------eecCCCCEEEEEEECC--C------CcCEeECCccEEEEEecCC
Confidence 111 6789999999999885 4 7999999999999999543
Q ss_pred CCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCce----eeEEeeecchhhhcccEEEEeccc
Q 008038 492 KFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPG----AWAFHCHIEPHFHIGMGVVLALGV 554 (580)
Q Consensus 492 ~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG----~w~~HCHil~H~d~GM~~~~~~~~ 554 (580)
... ..+..|||||.|+ +.+.|+++++++| .||||||||+|||.|||+.|.+.+
T Consensus 413 ~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 413 MPF--------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred CCC--------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 211 1224799999996 4699999999887 899999999999999999998854
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-58 Score=494.13 Aligned_cols=403 Identities=30% Similarity=0.429 Sum_probs=291.5
Q ss_pred CCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcC
Q 008038 45 PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVD 124 (580)
Q Consensus 45 ~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~ 124 (580)
.++.....|.|||++|||+||+++||+|.|+++|+|+ +.+++||||+..+ +.+||++..+|+.+.||++++|.|+..
T Consensus 47 ~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~-~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~~ 123 (451)
T COG2132 47 APGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLL-VDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQD 123 (451)
T ss_pred ecCCCceeEEecccccCceEEEecCCEEEEEEEeCCC-CCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecCC
Confidence 5667778999999999999999999999999999954 4499999998776 689999999999999999999999998
Q ss_pred CCcceeeecCcchhhccccEEEEEEEcCCCCCCCCCCCcceEEEEeecccCchHHHHhhhcCCCCCCCCCCceEEeCccC
Q 008038 125 KAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRG 204 (580)
Q Consensus 125 ~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~ 204 (580)
++||||||+|...|+.+||+|++||++..+ .+..+|.+.+++..+|................ ....+..+|||+.
T Consensus 124 ~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~--~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~vnG~~ 198 (451)
T COG2132 124 VPGTYWYHPHTHGQVYDGLAGALIIEDENS--EPLGVDDEPVILQDDWLDEDGTDLYQEGPAMG---GFPGDTLLVNGAI 198 (451)
T ss_pred CCcceEeccCCCchhhcccceeEEEeCCCC--CCCCCCceEEEEEeeeecCCCCccccCCcccc---CCCCCeEEECCCc
Confidence 888999999998899999999999999755 45578888899888988765443322211111 3367889999976
Q ss_pred CCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEE
Q 008038 205 QFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMD 284 (580)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~ 284 (580)
.+ +...++++|||||+|++..+.+.+++.+++|+||++||.+++|..++.+.
T Consensus 199 ~p----------------------------~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~ 250 (451)
T COG2132 199 LP----------------------------FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELY 250 (451)
T ss_pred cc----------------------------eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEE
Confidence 65 44446677999999999777888888899999999999999989999999
Q ss_pred EcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCceEEEEecCCCCCC-CCCCCCCCCCCCCCCCccccccccccccC
Q 008038 285 IYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASK-IPLSPPPITPRWDDYDHSKSFSNKIFALM 363 (580)
Q Consensus 285 l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 363 (580)
|+||||+||++++++ ++.+.+.+.. ...+ ....+........... .........+...... ..+........
T Consensus 251 l~p~er~~v~v~~~~--~~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~ 323 (451)
T COG2132 251 LAPGERYEVLVDMND--GGAVTLTALG-EDMP--DTLKGFRAPNPILTPSYPVLNGRVGAPTGDMAD--HAPVGLLVTIL 323 (451)
T ss_pred ecCcceEEEEEEcCC--CCeEEEEecc-ccCC--ceeeeeeccccccccccccccccccCCCcchhh--ccccccchhhc
Confidence 999999999999987 6778887765 1111 1111111111000000 0000000000000000 00000000000
Q ss_pred CCCCCCCCcceEEEEEeeeeecCCeEEEEEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccC
Q 008038 364 GSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTL 443 (580)
Q Consensus 364 ~~~~~p~~~~r~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~ 443 (580)
..+. ..+...+.... ..+...|.+|+..|.. .++
T Consensus 324 --~~~~--~~~~~~~~l~~--~~~~~~~~~n~~~~~~-------------------~~~--------------------- 357 (451)
T COG2132 324 --VEPG--PNRDTDFHLIG--GIGGYVWAINGKAFDD-------------------NRV--------------------- 357 (451)
T ss_pred --CCCc--ccccccchhhc--ccccccccccCccCCC-------------------CcC---------------------
Confidence 0000 01111111111 1123457777765521 111
Q ss_pred CceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEE
Q 008038 444 GSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALR 523 (580)
Q Consensus 444 ~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~ir 523 (580)
.+.++.|++++|+|.|.+.+ .|||||||+.|+|++.+ .. .....+.||||+.+.+++.++|+
T Consensus 358 ---~~~~~~G~~~~~~i~n~~~~------~HP~HlHg~~F~v~~~~-~~--------~~~~~~~~kDTv~v~~~~~~~v~ 419 (451)
T COG2132 358 ---TLIAKAGTRERWVLTNDTPM------PHPFHLHGHFFQVLSGD-AP--------APGAAPGWKDTVLVAPGERLLVR 419 (451)
T ss_pred ---ceeecCCCEEEEEEECCCCC------ccCeEEcCceEEEEecC-CC--------cccccCccceEEEeCCCeEEEEE
Confidence 27889999999999998878 99999999999999986 11 12235689999999999999999
Q ss_pred EEecCceeeEEeeecchhhhcccEEEEeccc
Q 008038 524 FVADNPGAWAFHCHIEPHFHIGMGVVLALGV 554 (580)
Q Consensus 524 f~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 554 (580)
|.+++||.|+||||+++|++.|||..+.+..
T Consensus 420 ~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 420 FDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred EeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 9999999999999999999999999997753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=8.9e-48 Score=389.08 Aligned_cols=266 Identities=21% Similarity=0.251 Sum_probs=220.1
Q ss_pred cCCceEEEEEEEEEEEeC-CCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCC-CceeeeeccccccCCCCCCCCC
Q 008038 27 YGSKTRHYKWEVEYMFWS-PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYT-EGVVIHWHGIRQLGTPWADGTA 104 (580)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~-~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~-~~~siH~HG~~~~~~~~~DG~~ 104 (580)
+...+++|+|++++..+. .+|..+.+|+|||++|||+||+++||+|+|+|+|++.. .++++||||. .++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCCC
Confidence 677899999999999888 68999999999999999999999999999999999421 5899999996 2579988
Q ss_pred CCccccCCCCCeEEEEEEcCCCcceeeecC----cchhhccccEEEEEEEcCCCCCCCCCCCcceEEEEeecccCchHHH
Q 008038 105 SISQCPINPGETYLYRFKVDKAGTYFYHGH----LGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQ 180 (580)
Q Consensus 105 ~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H----~~~~~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~~~d~~~~~~~~~ 180 (580)
.++| |.||++++|+|+++++|||||||| +..|+..||+|+|||++++. .+ .+|+|++|+++||++......
T Consensus 98 ~~~~--I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~--~~-~~d~e~~l~l~d~~~~~~~~~ 172 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG--LP-EYDKEYYIGESDLYTPKDEGE 172 (311)
T ss_pred ccee--ECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC--Cc-CcceeEEEeeeeEeccccccc
Confidence 8776 999999999999999999999999 46799999999999998643 22 578999999999999754321
Q ss_pred HhhhcCC-C-CCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEE
Q 008038 181 EVGLSSR-P-LRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNL 258 (580)
Q Consensus 181 ~~~~~~~-~-~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~ 258 (580)
...+... . +. ...++.++|||+..+.+ +.+++++||++||||||++..+.+.|
T Consensus 173 ~~~~~~~~~~~~-~~~~~~~~iNG~~~~~~------------------------~~~~v~~G~~~RlRiiNa~~~~~~~~ 227 (311)
T TIGR02376 173 GGAYEDDVAAMR-TLTPTHVVFNGAVGALT------------------------GDNALTAGVGERVLFVHSQPNRDSRP 227 (311)
T ss_pred cccccchHHHHh-cCCCCEEEECCccCCCC------------------------CCcccccCCcEEEEEEcCCCCCCCCC
Confidence 1100000 0 01 24678999999975410 14689999999999999998888999
Q ss_pred EEeCeeeEEEEECCcccCcee--eeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCCCceEEEEecCC
Q 008038 259 AVKNHKMVVVEADGNYVQPFE--VDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPT 330 (580)
Q Consensus 259 ~i~gh~~~via~DG~~v~P~~--~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~~~~ail~y~~~ 330 (580)
+++|+.+++|+.||.++.|.. ++++.|+||||+||+|++++ +|.|+++++..... ......|+|+|++.
T Consensus 228 ~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~--pG~y~~~~~~~~~~-~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 228 HLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ--PGVYAYVDHNLIEA-FEKGAAAQVKVEGA 298 (311)
T ss_pred eEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC--CeEEEEECcHHHHH-HhCCCEEEEEECCC
Confidence 999999999999999997644 89999999999999999997 79999999865432 13457899999854
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=3.9e-35 Score=253.59 Aligned_cols=115 Identities=48% Similarity=0.923 Sum_probs=107.5
Q ss_pred EEEEEEeCCCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCe
Q 008038 37 EVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGET 116 (580)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~ 116 (580)
.|++..+.++|..+.+|+|||++|||+||+++||+|+|+|+|+ +.++++|||||+++...+|+||+++++||+|.||++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~-l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~ 79 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNN-LDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGES 79 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEE-SSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEec-cccccccccceeeeeeeeecCCcccccceeEEeecc
Confidence 3678889999999999999999999999999999999999999 699999999999998888999999999999999999
Q ss_pred EEEEEEcCC-CcceeeecCcchhhccccEEEEEEEcC
Q 008038 117 YLYRFKVDK-AGTYFYHGHLGMQRSAGLYGSLIVDVA 152 (580)
Q Consensus 117 ~~y~f~~~~-~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 152 (580)
++|+|++.+ +||||||||+..|..+||+|+|||+++
T Consensus 80 ~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 80 FTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999999966 999999999887878999999999986
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=5.1e-29 Score=224.29 Aligned_cols=109 Identities=41% Similarity=0.797 Sum_probs=97.4
Q ss_pred ccCCceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEE
Q 008038 441 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWT 520 (580)
Q Consensus 441 ~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v 520 (580)
...+..++.++.|++|+|+|+|.+.. .|||||||++|+|++++.+.++......+++.+|.||||+.|++++++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~------~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~ 102 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSM------PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWV 102 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTS------SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCC------ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEE
Confidence 34566789999999999999998877 999999999999999987766544456788899999999999999999
Q ss_pred EEEEEecCceeeEEeeecchhhhcccEEEEecccc
Q 008038 521 ALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 555 (580)
Q Consensus 521 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~ 555 (580)
+|||+++|||.|+|||||++|++.|||++|.|.++
T Consensus 103 ~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 103 VIRFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred EEEEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 99999999999999999999999999999998763
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=3.1e-26 Score=210.68 Aligned_cols=152 Identities=35% Similarity=0.673 Sum_probs=123.9
Q ss_pred cceEEEEeecccCchHHHHhhhcCCC---CCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEec
Q 008038 163 GEFNLLLSDWWHRSVHEQEVGLSSRP---LRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQP 239 (580)
Q Consensus 163 ~e~~l~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (580)
.|++|+++||+++........+...+ ..++..+++++|||++..+|..+. ......+.+.+++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~--------------~~~~~~~~~~v~~ 66 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSAD--------------YTGGEPPVIKVKP 66 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTG--------------STTSTSGEEEEET
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCcccccccccc--------------ccccccceEEEcC
Confidence 37899999999988877665444332 223678999999999998765421 1234567999999
Q ss_pred CCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCC---C
Q 008038 240 NKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRK---P 316 (580)
Q Consensus 240 Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~---~ 316 (580)
|++|||||||+|+...+.|+|+||+|+|||+||.+++|+.++++.|++||||||+|++++ ++|+|+|++...... .
T Consensus 67 g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~-~~g~y~i~~~~~~~~~~~~ 145 (159)
T PF00394_consen 67 GERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQ-PPGNYWIRASYQHDSINDP 145 (159)
T ss_dssp TTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECS-CSSEEEEEEEESSSSSHSH
T ss_pred CcEEEEEEEeccCCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCC-CCCeEEEEEecccCCCccC
Confidence 999999999999999999999999999999999999999999999999999999999987 689999999743222 2
Q ss_pred CCCCceEEEEecC
Q 008038 317 ATPPALTLLNYHP 329 (580)
Q Consensus 317 ~~~~~~ail~y~~ 329 (580)
....++|+|+|++
T Consensus 146 ~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 146 QNGNALAILRYDG 158 (159)
T ss_dssp GGGTTEEEEEETT
T ss_pred CCcEEEEEEEECC
Confidence 4677899999984
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.76 E-value=1.8e-18 Score=188.14 Aligned_cols=141 Identities=21% Similarity=0.298 Sum_probs=116.6
Q ss_pred cccccchhHHHHHHHHHHHHhhccccCCceEEEEEEEEEEEeCCCCceeEEEEEcCCCCCC--eEEecCCCEEEEEEEeC
Q 008038 2 GLGLRHVAVVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGP--TIRARAGDTIAVELTNK 79 (580)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pgP--~l~v~~Gd~v~v~v~N~ 79 (580)
|+||+...++++.+..|.+...........++++++++. +..+.+|+|||+.+++ .|++++||+|+|+++|.
T Consensus 443 ~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g------~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~ 516 (587)
T TIGR01480 443 GIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTG------NMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVND 516 (587)
T ss_pred CcccccCCcceeehhhccccccccCcCCCCceEEEEEcC------CCceeEEEECCccCCCCCceEecCCCEEEEEEECC
Confidence 788999888898888888765554456677888888743 2568899999998874 79999999999999999
Q ss_pred CCCCceeeeeccccccCCCCCCCCCC--CccccCCCCCeEEEEEEcCCCcceeeecCcchhhccccEEEEEEE
Q 008038 80 LYTEGVVIHWHGIRQLGTPWADGTAS--ISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVD 150 (580)
Q Consensus 80 l~~~~~siH~HG~~~~~~~~~DG~~~--~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 150 (580)
...+|+|||||+.... ...||... -....|.||++++|+|.++++|+||||||...|...||++.+.|.
T Consensus 517 -t~~~HpmHlHG~~f~v-~~~~G~~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 517 -TMMAHPIHLHGMWSEL-EDGQGEFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred -CCCCcceeEcCceeee-ecCCCcccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 7899999999997643 23356321 123789999999999999999999999999999999999999873
No 22
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.76 E-value=7.3e-18 Score=151.28 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=81.7
Q ss_pred CCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCC--CCceeeeeccccccCCCCCCCCCCCccccCCCC----Ce--
Q 008038 45 PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLY--TEGVVIHWHGIRQLGTPWADGTASISQCPINPG----ET-- 116 (580)
Q Consensus 45 ~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~--~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG----~~-- 116 (580)
..+....-+.+|| .++|+|++++||+|+|+|+|.+. .-...||+||...+..+.+||++.++|++|.|+ +.
T Consensus 36 ~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 4556666778888 46999999999999999999942 223555555554433345899999999999884 11
Q ss_pred EEEEEEcCCCcceeeecCcchhhccccEEEEEEE
Q 008038 117 YLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVD 150 (580)
Q Consensus 117 ~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 150 (580)
.++.|++.++||||||||...|..+||+|.|||+
T Consensus 115 ~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 115 TDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 3455666799999999999999999999999985
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.72 E-value=1e-15 Score=155.45 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=144.3
Q ss_pred eEEEEecCCEEEEEEeecCCc-eeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 008038 233 QILHVQPNKTYRLRIASTTAL-ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311 (580)
Q Consensus 233 ~~~~v~~Ge~~rlRliNag~~-~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~ 311 (580)
++|++++|++++++|.|.... ..+.++++++. +.||... ...|.||+++++.+++++ +|+||+|||.
T Consensus 59 P~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~~--~Gty~YH~H~ 126 (311)
T TIGR02376 59 PLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKATR--PGAFVYHCAP 126 (311)
T ss_pred ceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcCC--CEEEEEEcCC
Confidence 489999999999999998532 46889998863 4577531 234999999999999876 8999999996
Q ss_pred cCC-CCC-CCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCcceEEEEEeeeeecCCeE
Q 008038 312 RGR-KPA-TPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT 389 (580)
Q Consensus 312 ~~~-~~~-~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~ 389 (580)
... ..+ .....+.|.+.+... . |.+ + .++...+....- .........+.............
T Consensus 127 ~~~~~~q~~~Gl~G~liV~~~~~--~--------~~~---d--~e~~l~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~ 189 (311)
T TIGR02376 127 PGMVPWHVVSGMNGAIMVLPREG--L--------PEY---D--KEYYIGESDLYT--PKDEGEGGAYEDDVAAMRTLTPT 189 (311)
T ss_pred CCchhHHhhcCcceEEEeeccCC--C--------cCc---c--eeEEEeeeeEec--cccccccccccchHHHHhcCCCC
Confidence 431 112 233445555553210 0 000 0 000000000000 00000000000000000000112
Q ss_pred EEEEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCC
Q 008038 390 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 469 (580)
Q Consensus 390 ~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~ 469 (580)
.+.|||+.... .+...++.|++++|+|.|.+..
T Consensus 190 ~~~iNG~~~~~--------------------------------------------~~~~~v~~G~~~RlRiiNa~~~--- 222 (311)
T TIGR02376 190 HVVFNGAVGAL--------------------------------------------TGDNALTAGVGERVLFVHSQPN--- 222 (311)
T ss_pred EEEECCccCCC--------------------------------------------CCCcccccCCcEEEEEEcCCCC---
Confidence 34555553210 0014678899999999997653
Q ss_pred CCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCC-ccceEEeCCCcEEEEEEEecCceeeEEeeecchhh-hcccE
Q 008038 470 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPP-LKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHF-HIGMG 547 (580)
Q Consensus 470 ~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~-~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~-d~GM~ 547 (580)
..+.||++|+.|.++.. +|.+- ..+. ..|++.|.||+...|.++++.||.|++|||...|+ ..||+
T Consensus 223 --~~~~~~~~g~~~~~v~~-DG~~~---------~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~ 290 (311)
T TIGR02376 223 --RDSRPHLIGGHGDYVWV-TGKFA---------NPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAA 290 (311)
T ss_pred --CCCCCeEecCCceEEEE-CCccc---------CCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCE
Confidence 16899999999999998 34321 1122 36999999999999999999999999999999998 77999
Q ss_pred EEEecc
Q 008038 548 VVLALG 553 (580)
Q Consensus 548 ~~~~~~ 553 (580)
+++.+.
T Consensus 291 ~~i~~~ 296 (311)
T TIGR02376 291 AQVKVE 296 (311)
T ss_pred EEEEEC
Confidence 999653
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.40 E-value=2.5e-12 Score=111.42 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=81.0
Q ss_pred HHHhhccccCCceEEEEEEEE--EEEe---CCCCceeEEE-EEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccc
Q 008038 19 LCSVFETSYGSKTRHYKWEVE--YMFW---SPDCKESIVM-GINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGI 92 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~ 92 (580)
+.+++...+++..++|+++|+ ..++ +..|.....+ ++|+++..+.|+|++||+|+++++|. .+.++.+-+++.
T Consensus 12 ~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~-d~~~H~f~i~~~ 90 (135)
T TIGR03096 12 LGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENK-SPISEGFSIDAY 90 (135)
T ss_pred HHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeC-CCCccceEECCC
Confidence 345555677888899999999 4444 4677777766 99999999999999999999999999 555442222221
Q ss_pred cccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcc
Q 008038 93 RQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLG 136 (580)
Q Consensus 93 ~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~ 136 (580)
|. +..|+||++.+++|++.++|+|||||-..
T Consensus 91 ---------gi----s~~I~pGet~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 91 ---------GI----SEVIKAGETKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred ---------Cc----ceEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 11 35689999999999999999999999743
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.37 E-value=1.3e-10 Score=126.13 Aligned_cols=257 Identities=12% Similarity=0.054 Sum_probs=154.8
Q ss_pred EEEEEEEEEEEeCCCC--------------ceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeee-ccccccC
Q 008038 32 RHYKWEVEYMFWSPDC--------------KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHW-HGIRQLG 96 (580)
Q Consensus 32 ~~~~l~~~~~~~~~~g--------------~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~-HG~~~~~ 96 (580)
.++.|.++......+| .....+++||+. .|.+.++ |.++++|+.|........+.+ .|....-
T Consensus 180 ~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~v 257 (523)
T PRK10965 180 DDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYV 257 (523)
T ss_pred ceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEE
Confidence 3566777655544433 234578999995 7999885 569999999995556667776 4543221
Q ss_pred CCCCCCCC-----CCccccCCCCCeEEEEEEcCCCcceeeecCcchhhc------cccEEEEEEEcCC--C-CCCC----
Q 008038 97 TPWADGTA-----SISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRS------AGLYGSLIVDVAD--G-EKEP---- 158 (580)
Q Consensus 97 ~~~~DG~~-----~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~------~Gl~G~liV~~~~--~-~~~p---- 158 (580)
...||.+ .+....|.|||+++..+++.+.|.++...-...+.. ..-+-.+.|.... . ...|
T Consensus 258 -Ia~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~ 336 (523)
T PRK10965 258 -IASDGGLLAEPVKVSELPILMGERFEVLVDTSDGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLA 336 (523)
T ss_pred -EEeCCCcccCccEeCeEEECccceEEEEEEcCCCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhc
Confidence 4678854 234577999999999999877777776653111110 1011223333211 1 0111
Q ss_pred ----CCC-----CcceEEEEeecccC-ch-------H-HHHhhh------cC--CC----CC-----CCC---CCceEEe
Q 008038 159 ----FHY-----DGEFNLLLSDWWHR-SV-------H-EQEVGL------SS--RP----LR-----WIG---EPQTLLI 200 (580)
Q Consensus 159 ----~~~-----d~e~~l~~~d~~~~-~~-------~-~~~~~~------~~--~~----~~-----~~~---~~~~~li 200 (580)
... .+++.+.+..+... .. . .....+ .. .+ +. ... ....++|
T Consensus 337 ~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 416 (523)
T PRK10965 337 SLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKI 416 (523)
T ss_pred cCCCCCcccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 000 02223322211100 00 0 000000 00 00 00 000 0112489
Q ss_pred CccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccC---c
Q 008038 201 NGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ---P 277 (580)
Q Consensus 201 NG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~---P 277 (580)
||+.+.. ..+.++++.|++++|+|+|.+....|.|||||+.|+|++.||.+.. +
T Consensus 417 NG~~~~~-----------------------~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~ 473 (523)
T PRK10965 417 NGKAFDM-----------------------NKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRA 473 (523)
T ss_pred CCeECCC-----------------------CCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCcccc
Confidence 9998651 1235789999999999999986557999999999999999999775 3
Q ss_pred eeeeeEEEcCCceEEEEEEeCC--CCCcceEEEEeecCCC
Q 008038 278 FEVDDMDIYSGESYSVLLTTNQ--DPSYNYWISAGVRGRK 315 (580)
Q Consensus 278 ~~~d~v~l~pGeR~dv~v~~~~--~~~g~y~l~~~~~~~~ 315 (580)
...|+|.|.+ ++++++++++. +..|.|.+|||.+...
T Consensus 474 ~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~He 512 (523)
T PRK10965 474 GWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHE 512 (523)
T ss_pred ccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhh
Confidence 4689999977 88999999974 2357999999986643
No 26
>PLN02835 oxidoreductase
Probab=99.28 E-value=4.1e-10 Score=122.60 Aligned_cols=272 Identities=12% Similarity=0.101 Sum_probs=160.3
Q ss_pred eEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCC----CccccCCCCCeEEEEEEc-C
Q 008038 50 SIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTAS----ISQCPINPGETYLYRFKV-D 124 (580)
Q Consensus 50 ~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~----~~q~~i~pG~~~~y~f~~-~ 124 (580)
...+++||+. .|++++++|+++++|+.|........+|+.|..... .+.||.+- +....|.|||+++..+++ +
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~V-I~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEE-EEECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 3578999995 589999999999999999966678899999987643 57899752 345679999999999999 5
Q ss_pred CCcceeeecCcchh-hccccEEEEEEEcCCC---CCCCC-CC-Cc--------ceEEEEeecccCchHH--HHh-hhc-C
Q 008038 125 KAGTYFYHGHLGMQ-RSAGLYGSLIVDVADG---EKEPF-HY-DG--------EFNLLLSDWWHRSVHE--QEV-GLS-S 186 (580)
Q Consensus 125 ~~Gt~wYH~H~~~~-~~~Gl~G~liV~~~~~---~~~p~-~~-d~--------e~~l~~~d~~~~~~~~--~~~-~~~-~ 186 (580)
.+|.||...-.... ......+.|-.+.... .+.|. .. +. .....+......+... ... ... .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 57999998632111 1111233333322211 01111 00 00 0000011100000000 000 000 0
Q ss_pred CC----CCCC--CCCceEEeCccCCCC--ccc-cccccCCCccccc-----ccCC--CCCCceEEEEecCCEEEEEEeec
Q 008038 187 RP----LRWI--GEPQTLLINGRGQFN--CSL-AAHFSNGSAEQCK-----LRGN--EQCAPQILHVQPNKTYRLRIAST 250 (580)
Q Consensus 187 ~~----~~~~--~~~~~~liNG~~~~~--~~~-~~~~~~~~~~~~~-----~~~~--~~~~~~~~~v~~Ge~~rlRliNa 250 (580)
.. .... .....+.|||..+.. .++ ...|.......|. ...+ .-.....+.++.|+.+.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 00 0000 011457889887642 111 0000000000010 0000 00112367888899999999997
Q ss_pred CCceeEEEEEeCeeeEEEEE-CCcc----------cCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCCCCCC
Q 008038 251 TALASLNLAVKNHKMVVVEA-DGNY----------VQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATP 319 (580)
Q Consensus 251 g~~~~~~~~i~gh~~~via~-DG~~----------v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~~~~~ 319 (580)
+.. .|.||+|||.|+|++. +|.+ ..|...|++.+.+++..-+-+.+++ +|.|.||||.... ...
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN--PG~Wl~HCHi~~H--~~~ 503 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN--QGMWNMRSAIWER--QYL 503 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC--CEEeeeeecchhh--hhc
Confidence 644 7999999999999987 5522 2488999999999999999999998 9999999997442 233
Q ss_pred CceEEEEec
Q 008038 320 PALTLLNYH 328 (580)
Q Consensus 320 ~~~ail~y~ 328 (580)
...+++++.
T Consensus 504 Gm~~~~~V~ 512 (539)
T PLN02835 504 GQQFYLRVW 512 (539)
T ss_pred ccEEEEEEc
Confidence 444555555
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.28 E-value=8.1e-10 Score=121.16 Aligned_cols=259 Identities=16% Similarity=0.200 Sum_probs=151.1
Q ss_pred EEEEEcCCC-C--------CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC----CCccccCCCCCeE
Q 008038 51 IVMGINGQF-P--------GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA----SISQCPINPGETY 117 (580)
Q Consensus 51 ~~~~~NG~~-p--------gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~ 117 (580)
..+++||+. + .++|+|++|+++++|+.|........+|.+|..... .+.||.+ .+....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~V-Ia~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTV-VEVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEE-EEeCCcccCceEeCeEEecCCCEE
Confidence 468999983 1 148999999999999999955666788888877643 5789975 2346789999999
Q ss_pred EEEEEcC-CCcceeeecCcc--hh--hccccEEEEEEEc-CCCCCCCC-C----CCc---ceE----E-EE--eeccc--
Q 008038 118 LYRFKVD-KAGTYFYHGHLG--MQ--RSAGLYGSLIVDV-ADGEKEPF-H----YDG---EFN----L-LL--SDWWH-- 174 (580)
Q Consensus 118 ~y~f~~~-~~Gt~wYH~H~~--~~--~~~Gl~G~liV~~-~~~~~~p~-~----~d~---e~~----l-~~--~d~~~-- 174 (580)
+..++++ .+|.||.+.+.. .+ .......+++... ......|. . ++. ... + .+ ..+..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999994 489999998742 11 1111122333332 22211110 0 100 000 0 00 00000
Q ss_pred -CchHH-HHhhhcCCCC---------CCCCCCceEEeCccCCC--Cccc-ccccc-----------CC-CcccccccCC-
Q 008038 175 -RSVHE-QEVGLSSRPL---------RWIGEPQTLLINGRGQF--NCSL-AAHFS-----------NG-SAEQCKLRGN- 227 (580)
Q Consensus 175 -~~~~~-~~~~~~~~~~---------~~~~~~~~~liNG~~~~--~~~~-~~~~~-----------~~-~~~~~~~~~~- 227 (580)
..... ....+. ... ...+....+.|||..+. ..++ ...+. .. ....|. ...
T Consensus 326 p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~ 403 (539)
T TIGR03389 326 PVTIDRRLFFTIG-LGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNY-TGTN 403 (539)
T ss_pred CCCCCeEEEEEee-cccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccC-CCCC
Confidence 00000 000000 000 00011124678888642 1111 00000 00 000010 000
Q ss_pred ------CCCCceEEEEecCCEEEEEEeecCC--ceeEEEEEeCeeeEEEEEC-Ccc-----------cCceeeeeEEEcC
Q 008038 228 ------EQCAPQILHVQPNKTYRLRIASTTA--LASLNLAVKNHKMVVVEAD-GNY-----------VQPFEVDDMDIYS 287 (580)
Q Consensus 228 ------~~~~~~~~~v~~Ge~~rlRliNag~--~~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~v~l~p 287 (580)
......++.++.|++|.+.|.|.+. ...|.||+|||.|+|++.+ |.+ ..|...|++.+.+
T Consensus 404 ~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~ 483 (539)
T TIGR03389 404 LPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPT 483 (539)
T ss_pred cccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCC
Confidence 0012246889999999999999752 3379999999999999986 321 1377789999999
Q ss_pred CceEEEEEEeCCCCCcceEEEEeecCC
Q 008038 288 GESYSVLLTTNQDPSYNYWISAGVRGR 314 (580)
Q Consensus 288 GeR~dv~v~~~~~~~g~y~l~~~~~~~ 314 (580)
+.-+.+-+++++ +|.|.||||....
T Consensus 484 ~g~vvirf~adN--PG~W~~HCHi~~H 508 (539)
T TIGR03389 484 GGWAAIRFVADN--PGVWFMHCHLEVH 508 (539)
T ss_pred CceEEEEEecCC--CeEEEEEecccch
Confidence 999999999988 9999999997554
No 28
>PRK10883 FtsI repressor; Provisional
Probab=99.27 E-value=1.4e-10 Score=124.65 Aligned_cols=242 Identities=12% Similarity=0.005 Sum_probs=145.8
Q ss_pred EEEEEEEEEEeCCC-----------CceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeee-ccccccCCCCC
Q 008038 33 HYKWEVEYMFWSPD-----------CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHW-HGIRQLGTPWA 100 (580)
Q Consensus 33 ~~~l~~~~~~~~~~-----------g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~-HG~~~~~~~~~ 100 (580)
++.|.++...+..+ |....++++||+. .|.|.|++| ++++|+.|........+++ .|..... ...
T Consensus 181 d~~l~l~D~~~~~~g~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~v-Ia~ 257 (471)
T PRK10883 181 DFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHV-IAG 257 (471)
T ss_pred ceeEEeeeeeeccCCCccccccccCCccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEE-EEe
Confidence 56666665444332 3345678999994 799999876 8999999996667788888 5653321 457
Q ss_pred CCCCC-----CccccCCCCCeEEEEEEcCCCcceeeecCcchhhccccEE------------EEEEEcCCCCCCCCCCCc
Q 008038 101 DGTAS-----ISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYG------------SLIVDVADGEKEPFHYDG 163 (580)
Q Consensus 101 DG~~~-----~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G------------~liV~~~~~~~~p~~~d~ 163 (580)
||-.. +....|.|||+++...++.+.+.+.+++-........+.+ .+-+....... +. +.
T Consensus 258 DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~ 334 (471)
T PRK10883 258 DQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV--TD 334 (471)
T ss_pred CCCcccCCcEeCeEEECCCCeEEEEEECCCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC--CC
Confidence 85331 3467889999999999986666777666311110011111 11111110000 00 00
Q ss_pred ceEEEEeecccCchHHHHhhhcCCCCCCCCCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEE
Q 008038 164 EFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTY 243 (580)
Q Consensus 164 e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~ 243 (580)
..+..+........ .. .....+......++|||+.+.. ....++++.|+++
T Consensus 335 ~~p~~l~~~~~~~~-~~-----~~~~~~~l~~~~~~INg~~~~~-----------------------~~~~~~~~~g~~e 385 (471)
T PRK10883 335 NLPMRLLPDEIMEG-SP-----IRSREISLGDDLPGINGALWDM-----------------------NRIDVTAQQGTWE 385 (471)
T ss_pred cCChhhcCCCCCCC-CC-----cceEEEEecCCcCccCCcccCC-----------------------CcceeecCCCCEE
Confidence 00000000000000 00 0000000011234699998651 1124679999999
Q ss_pred EEEEeecCCceeEEEEEeCeeeEEEEECCcccCc---eeeeeEEEcCCceEEEEEEeCCCCCc---ceEEEEeecCCC
Q 008038 244 RLRIASTTALASLNLAVKNHKMVVVEADGNYVQP---FEVDDMDIYSGESYSVLLTTNQDPSY---NYWISAGVRGRK 315 (580)
Q Consensus 244 rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P---~~~d~v~l~pGeR~dv~v~~~~~~~g---~y~l~~~~~~~~ 315 (580)
+|+|.|.. .|.||||+|.|+|++.||....| ...|+|.+. +++.++++++. ..+ .|.+|||.+...
T Consensus 386 ~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gwkDTV~v~--~~v~i~~~f~~-~~~~~~~~m~HCHiLeHe 457 (471)
T PRK10883 386 RWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGWKDTVWVD--GQVELLVYFGQ-PSWAHFPFLFYSQTLEMA 457 (471)
T ss_pred EEEEECCC---CcCEeECCccEEEEEecCCCCCccccCcCcEEEcC--CeEEEEEEecC-CCCCCCcEEeeccccccc
Confidence 99999863 69999999999999999986543 347999994 57999999986 333 799999987654
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=99.05 E-value=3.3e-08 Score=107.99 Aligned_cols=254 Identities=11% Similarity=0.162 Sum_probs=150.9
Q ss_pred EEEEEcCCCC------CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC----CCccccCCCCCeEEEE
Q 008038 51 IVMGINGQFP------GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA----SISQCPINPGETYLYR 120 (580)
Q Consensus 51 ~~~~~NG~~p------gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~ 120 (580)
..++|||+.. .|+|.|++|++.++|+.|........+|+.|..... .+.||++ .+....|.|||+++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKL-VEMEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEE-EEeCCcccCCcceeEEEEccCceEEEE
Confidence 4689999842 379999999999999999977778889999987643 5789976 2345779999999999
Q ss_pred EEc-CCCcceeeecCcchhhc-cccEEEEEEEcCCCCC---CCCC-CCcceEE-EEeeccc-------CchH--H-HH--
Q 008038 121 FKV-DKAGTYFYHGHLGMQRS-AGLYGSLIVDVADGEK---EPFH-YDGEFNL-LLSDWWH-------RSVH--E-QE-- 181 (580)
Q Consensus 121 f~~-~~~Gt~wYH~H~~~~~~-~Gl~G~liV~~~~~~~---~p~~-~d~e~~l-~~~d~~~-------~~~~--~-~~-- 181 (580)
+++ +.+|.||.......... ..-.+.|......... .|.. .+..... ...+... .+.. . ..
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 999 45899999887432111 1123333333221100 1110 0000000 0000000 0000 0 00
Q ss_pred hhhc-----CCCCCCCCCCceEEeCccCCCC--ccc-ccccc---CC--------Cc--ccccccCCCCCCceEEEEecC
Q 008038 182 VGLS-----SRPLRWIGEPQTLLINGRGQFN--CSL-AAHFS---NG--------SA--EQCKLRGNEQCAPQILHVQPN 240 (580)
Q Consensus 182 ~~~~-----~~~~~~~~~~~~~liNG~~~~~--~~~-~~~~~---~~--------~~--~~~~~~~~~~~~~~~~~v~~G 240 (580)
.... ............+.|||..+.. .++ ...|. .+ .. ..|+ .......++.++.|
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~---~~~~~~~v~~~~~~ 425 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKIT---KIKIQPNVLNITFR 425 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccC---ccccCCeeEEcCCC
Confidence 0000 0000000011356788877541 111 00010 00 00 0011 00112236788889
Q ss_pred CEEEEEEeecCCceeEEEEEeCeeeEEEEECC-----------cccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEE
Q 008038 241 KTYRLRIASTTALASLNLAVKNHKMVVVEADG-----------NYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 309 (580)
Q Consensus 241 e~~rlRliNag~~~~~~~~i~gh~~~via~DG-----------~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~ 309 (580)
+.|.+=|.|... ..|.||+|||.|+|++.-- +...|...|++.+.++.=.-+-+++++ +|-|.|||
T Consensus 426 ~~VeiVi~n~~~-~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDN--PGvW~~HC 502 (552)
T PLN02354 426 TFVEIIFENHEK-SMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDN--AGMWNIRS 502 (552)
T ss_pred CEEEEEEeCCCC-CCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecC--CeEEeeec
Confidence 999999999753 3799999999999997642 123588899999999999899999988 89999999
Q ss_pred ee
Q 008038 310 GV 311 (580)
Q Consensus 310 ~~ 311 (580)
|.
T Consensus 503 Hi 504 (552)
T PLN02354 503 EN 504 (552)
T ss_pred cc
Confidence 97
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.04 E-value=8.5e-09 Score=113.09 Aligned_cols=248 Identities=13% Similarity=0.147 Sum_probs=142.5
Q ss_pred eEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC----CCccccCCCCCeEEEEEEcCC-C-cceeeecCcc
Q 008038 63 TIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA----SISQCPINPGETYLYRFKVDK-A-GTYFYHGHLG 136 (580)
Q Consensus 63 ~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~~-~-Gt~wYH~H~~ 136 (580)
+|.|++|+++++|+.|........+++.|..... ...||.+ .+....|.|||+++..+++++ + |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 5899999999999999966778888888877643 5778865 234567999999999999954 3 5899987533
Q ss_pred hhhc-cccEEEEEEEcCCCCCC-C-------CCCC-cc----eEE-EEeec-ccCchHHHHhh--hcCCCCCCCCCCceE
Q 008038 137 MQRS-AGLYGSLIVDVADGEKE-P-------FHYD-GE----FNL-LLSDW-WHRSVHEQEVG--LSSRPLRWIGEPQTL 198 (580)
Q Consensus 137 ~~~~-~Gl~G~liV~~~~~~~~-p-------~~~d-~e----~~l-~~~d~-~~~~~~~~~~~--~~~~~~~~~~~~~~~ 198 (580)
.+.. .....+++.+....... | ..++ .+ ..+ .+... ........... +...... ......+
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 361 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNK-INGYTKW 361 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcc-cCceEEE
Confidence 2211 11122444443221110 1 0011 00 000 00000 00000000000 0000000 0012347
Q ss_pred EeCccCCC--Cccc-c-cc------ccCC---Cccccccc-------CCCCCCceEEEEecCCEEEEEEeecCC-----c
Q 008038 199 LINGRGQF--NCSL-A-AH------FSNG---SAEQCKLR-------GNEQCAPQILHVQPNKTYRLRIASTTA-----L 253 (580)
Q Consensus 199 liNG~~~~--~~~~-~-~~------~~~~---~~~~~~~~-------~~~~~~~~~~~v~~Ge~~rlRliNag~-----~ 253 (580)
.+||..+. ..++ . .. +... ....|++. ........++.++.|++|.+.|.|... .
T Consensus 362 ~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~ 441 (541)
T TIGR03388 362 AINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNS 441 (541)
T ss_pred EECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCC
Confidence 78888763 1110 0 00 0000 00011110 000011236889999999999999642 3
Q ss_pred eeEEEEEeCeeeEEEEEC-Ccc-----------cCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCC
Q 008038 254 ASLNLAVKNHKMVVVEAD-GNY-----------VQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGR 314 (580)
Q Consensus 254 ~~~~~~i~gh~~~via~D-G~~-----------v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~ 314 (580)
..|.||+|||+|+|++.. |.+ ..|...|++.+.++.-+-+-+++++ +|.|.+|||....
T Consensus 442 ~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN--PG~W~~HCHi~~H 512 (541)
T TIGR03388 442 ETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN--PGVWAFHCHIEPH 512 (541)
T ss_pred CCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC--CeEeeeeccchhh
Confidence 469999999999999987 432 1377889999999999989999988 9999999997554
No 31
>PLN02991 oxidoreductase
Probab=99.03 E-value=6e-08 Score=105.39 Aligned_cols=257 Identities=11% Similarity=0.080 Sum_probs=149.0
Q ss_pred eEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC----CCccccCCCCCeEEEEEEc-C
Q 008038 50 SIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA----SISQCPINPGETYLYRFKV-D 124 (580)
Q Consensus 50 ~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~-~ 124 (580)
...+++||+...++++|++|+++++|+.|........+++.|..... ...||.+ .+....|.|||+++...++ +
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKL-VEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEE-EEeCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 45789999966689999999999999999965566788888877643 5679965 2356789999999999999 5
Q ss_pred CCcceeeecCcc--hhhccccEEEEEEEcCCCC---CCCCC-CCcceEEE---EeecccCch------HH--------HH
Q 008038 125 KAGTYFYHGHLG--MQRSAGLYGSLIVDVADGE---KEPFH-YDGEFNLL---LSDWWHRSV------HE--------QE 181 (580)
Q Consensus 125 ~~Gt~wYH~H~~--~~~~~Gl~G~liV~~~~~~---~~p~~-~d~e~~l~---~~d~~~~~~------~~--------~~ 181 (580)
..|.||.-.... .+...+ .+.|-.+..... +.|.. .+.+...- ..++..... .. +.
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~-~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILIT-TGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCcEEEEEeeccCCCCcce-EEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 578899775521 111121 333333222110 11110 01101000 000000000 00 00
Q ss_pred hhhc-CCCCCCCCCCceEEeCccCCCC--ccc-cccccC-CC------cccccccCCCCCCceEEEEecCCEEEEEEeec
Q 008038 182 VGLS-SRPLRWIGEPQTLLINGRGQFN--CSL-AAHFSN-GS------AEQCKLRGNEQCAPQILHVQPNKTYRLRIAST 250 (580)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~liNG~~~~~--~~~-~~~~~~-~~------~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNa 250 (580)
.... ............+.|||..+.. .++ ...|.. .+ .+.-...........++.++.++.|.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 0000 0000000011356788876541 111 011100 00 00000000000112356788899999988886
Q ss_pred CCceeEEEEEeCeeeEEEEECC-c----------ccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 008038 251 TALASLNLAVKNHKMVVVEADG-N----------YVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311 (580)
Q Consensus 251 g~~~~~~~~i~gh~~~via~DG-~----------~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~ 311 (580)
... .|.||+|||.|.|++... . ...|...|++.+.++.=.-+-+.+++ +|.|.+|||.
T Consensus 428 ~~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN--PG~W~~HCHi 496 (543)
T PLN02991 428 EDI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN--VGMWNLRSEL 496 (543)
T ss_pred CCC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC--CEEeeeeeCc
Confidence 543 799999999999998642 1 23588899999999999999999988 9999999997
No 32
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.03 E-value=9.1e-09 Score=110.86 Aligned_cols=238 Identities=16% Similarity=0.068 Sum_probs=150.2
Q ss_pred CCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC----CCccccCCCCCeEEEEE
Q 008038 46 DCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA----SISQCPINPGETYLYRF 121 (580)
Q Consensus 46 ~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f 121 (580)
.+.......+||+. -|.+.+..| .+++|+.|........+++.|..... ...||.+ .+.+..+.|||+++...
T Consensus 185 ~~~~g~~~~vnG~~-~p~~~~~~g-~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v 261 (451)
T COG2132 185 GGFPGDTLLVNGAI-LPFKAVPGG-VVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLV 261 (451)
T ss_pred cCCCCCeEEECCCc-cceeecCCC-eEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEE
Confidence 34556677888853 455555555 59999999933666777777655542 4568866 46678999999999999
Q ss_pred EcCCCcceeeecCcchhhccccEEEEEEEcCCCCCCCCCCCcceEEEEeec-ccCchHHHHhhhcCCC--------CCCC
Q 008038 122 KVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDW-WHRSVHEQEVGLSSRP--------LRWI 192 (580)
Q Consensus 122 ~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~~~d~-~~~~~~~~~~~~~~~~--------~~~~ 192 (580)
+....|++-+.|.. .+..+-+.+..-......... ..++........|- ...............+ ..+.
T Consensus 262 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (451)
T COG2132 262 DMNDGGAVTLTALG-EDMPDTLKGFRAPNPILTPSY-PVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIGG 339 (451)
T ss_pred EcCCCCeEEEEecc-ccCCceeeeeecccccccccc-ccccccccCCCcchhhccccccchhhcCCCcccccccchhhcc
Confidence 99778999999886 222222222222211110000 01111111111110 0000000000000000 0001
Q ss_pred CCCceEEeCccCCCCccccccccCCCcccccccCCCCCCceEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECC
Q 008038 193 GEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADG 272 (580)
Q Consensus 193 ~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG 272 (580)
.....+.+||+.+.+ ....+.++.|++++|+|.|-+. ..|.||+||+.|.|++.|
T Consensus 340 ~~~~~~~~n~~~~~~-----------------------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~- 394 (451)
T COG2132 340 IGGYVWAINGKAFDD-----------------------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD- 394 (451)
T ss_pred cccccccccCccCCC-----------------------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-
Confidence 233557788877651 1336889999999999999987 689999999999999999
Q ss_pred ccc---CceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCCC
Q 008038 273 NYV---QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRK 315 (580)
Q Consensus 273 ~~v---~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~~ 315 (580)
... .+...|++.+.+++++.+.++++. +|.|.+|||.....
T Consensus 395 ~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~--~g~~~~HCH~l~H~ 438 (451)
T COG2132 395 APAPGAAPGWKDTVLVAPGERLLVRFDADY--PGPWMFHCHILEHE 438 (451)
T ss_pred CCcccccCccceEEEeCCCeEEEEEEeCCC--CCceEEeccchhHh
Confidence 322 356789999999999999999987 67999999976543
No 33
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.02 E-value=1.9e-08 Score=110.07 Aligned_cols=233 Identities=10% Similarity=0.074 Sum_probs=134.6
Q ss_pred eEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEE-EEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 008038 233 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311 (580)
Q Consensus 233 ~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~ 311 (580)
|+|+++.|+++++++.|.-......+|.||..+.- -..||.+. +..-.|.||+.++..++++..++|+||+|+|.
T Consensus 39 P~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~ 114 (538)
T TIGR03390 39 PEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHV 114 (538)
T ss_pred CeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcEEEEEEecCCCCeeeEEecCC
Confidence 58999999999999999755456778888875433 24799863 22335899999999999864458999999996
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCcceEEEEEeeeeecCCeEEE
Q 008038 312 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 391 (580)
Q Consensus 312 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~ 391 (580)
... ....+|.|.+.+.... + . .++ .+....+.... ..........+. .............
T Consensus 115 ~~Q---~~~l~G~lIV~~~~~~-------~-~-~~d-----~e~~l~l~Dw~--~~~~~~~~~~~~-~~~~~~~~~~d~~ 174 (538)
T TIGR03390 115 GFQ---AVTAFGPLIVEDCEPP-------P-Y-KYD-----DERILLVSDFF--SATDEEIEQGLL-STPFTWSGETEAV 174 (538)
T ss_pred chh---hhcceeEEEEccCCcc-------C-C-Ccc-----CcEEEEEeCCC--CCCHHHHHhhhh-ccCCccCCCCceE
Confidence 332 2224555555421100 0 0 010 00000010000 000000000000 0000000011234
Q ss_pred EEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCC
Q 008038 392 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLS 471 (580)
Q Consensus 392 ~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~ 471 (580)
.|||+........ ..++ ...| ....+.++.|++++|+|+|.+..
T Consensus 175 liNG~~~~~~~~~-------~~~~-----------------------~~~~-~~~~~~v~~G~~yRlRlINa~~~----- 218 (538)
T TIGR03390 175 LLNGKSGNKSFYA-------QINP-----------------------SGSC-MLPVIDVEPGKTYRLRFIGATAL----- 218 (538)
T ss_pred EECCccccccccc-------cccC-----------------------CCCC-cceEEEECCCCEEEEEEEccCCc-----
Confidence 5666521100000 0000 0000 12358899999999999998764
Q ss_pred CCCCeeecCCC-eEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCc--------eeeEEee
Q 008038 472 EIHPWHLHGHD-FWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNP--------GAWAFHC 536 (580)
Q Consensus 472 ~~HP~HlHG~~-F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnp--------G~w~~HC 536 (580)
...-|+|.||+ |+|++..+. +..|...|++.|.+|++.-|.++++++ |.|.+.-
T Consensus 219 ~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~ 281 (538)
T TIGR03390 219 SLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQF 281 (538)
T ss_pred eEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEE
Confidence 16889999999 999997332 235778899999999999999999863 6766554
No 34
>PLN02792 oxidoreductase
Probab=98.99 E-value=2.5e-08 Score=108.47 Aligned_cols=220 Identities=13% Similarity=0.096 Sum_probs=126.0
Q ss_pred eEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEE-EECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 008038 233 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVV-EADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311 (580)
Q Consensus 233 ~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~ 311 (580)
|+|++++|+++++++.|-.. ....+|.||..+.-- ..||.+. .+-.|.||+.+...+++++ +.|+||.|+|.
T Consensus 47 P~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~q~~~~~~DGv~~-----tqcPI~PG~sftY~F~~~~-q~GT~WYHsH~ 119 (536)
T PLN02792 47 PEIRSLTNDNLVINVHNDLD-EPFLLSWNGVHMRKNSYQDGVYG-----TTCPIPPGKNYTYDFQVKD-QVGSYFYFPSL 119 (536)
T ss_pred CcEEEECCCEEEEEEEeCCC-CCcCEeCCCcccCCCCccCCCCC-----CcCccCCCCcEEEEEEeCC-CccceEEecCc
Confidence 58999999999999999865 355666666544332 3799642 2357999999999999863 48999999996
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCcceEEEEEeeeeecCCeEEE
Q 008038 312 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 391 (580)
Q Consensus 312 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~ 391 (580)
.......+.+..+| +.... .. .| .+.+.. +....+.+..- ........ .+.............
T Consensus 120 ~~q~~~Gl~G~liI-~~~~~-~~-----~p-~~~~d~-----e~~i~l~Dw~~--~~~~~~~~--~~~~g~~~~~~~d~~ 182 (536)
T PLN02792 120 AVQKAAGGYGSLRI-YSLPR-IP-----VP-FPEPAG-----DFTFLIGDWYR--RNHTTLKK--ILDGGRKLPLMPDGV 182 (536)
T ss_pred chhhhcccccceEE-eCCcc-cC-----cC-CCcccc-----eeEEEeccccc--CCHHHHHH--HhhccCcCCCCCCEE
Confidence 43221122222222 22110 00 00 000000 00000000000 00000000 000000000000123
Q ss_pred EEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCC
Q 008038 392 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLS 471 (580)
Q Consensus 392 ~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~ 471 (580)
.|||+... ....+.++.|++++|+|+|.+..
T Consensus 183 liNG~~~~--------------------------------------------~~~~~~v~~Gk~yRlRliNa~~~----- 213 (536)
T PLN02792 183 MINGQGVS--------------------------------------------YVYSITVDKGKTYRFRISNVGLQ----- 213 (536)
T ss_pred EEeccCCC--------------------------------------------CcceEEECCCCEEEEEEEEcCCC-----
Confidence 34443100 01248899999999999998765
Q ss_pred CCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecC-ceeeEEee
Q 008038 472 EIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PGAWAFHC 536 (580)
Q Consensus 472 ~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn-pG~w~~HC 536 (580)
...-|+|.||+|.|++.. |.+ ..|...|++.|.+|+++-|.++++. +|.|.+.-
T Consensus 214 ~~~~f~i~gH~~tVI~~D-G~~----------v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a 268 (536)
T PLN02792 214 TSLNFEILGHQLKLIEVE-GTH----------TVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVV 268 (536)
T ss_pred ceEEEEECCcEEEEEEeC-Ccc----------CCCcceeEEEEccCceEEEEEEcCCCCceEEEEE
Confidence 268999999999999973 322 2355679999999999999999975 57776653
No 35
>PLN02168 copper ion binding / pectinesterase
Probab=98.98 E-value=3.7e-08 Score=107.19 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=149.1
Q ss_pred EEEEEcCCCC-CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC----CCccccCCCCCeEEEEEEcC-
Q 008038 51 IVMGINGQFP-GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA----SISQCPINPGETYLYRFKVD- 124 (580)
Q Consensus 51 ~~~~~NG~~p-gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~----~~~q~~i~pG~~~~y~f~~~- 124 (580)
..+++||+.+ .|+|.+++|+++++|+.|........+++.|..+.. ...||.+ .+.+..|.|||+++..+++.
T Consensus 189 d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 189 DGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLL-VETEGTYVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEE-EEECCeECCCceeeEEEEcCCceEEEEEEcCC
Confidence 4689999853 589999999999999999965667888888877643 4678864 23567899999999999994
Q ss_pred CC-c---ceeeecCcc--hhhccccEEEEEEEcCCCCC--CCCC----C-Cc----ceEEEEe-ecc---cCchHH--HH
Q 008038 125 KA-G---TYFYHGHLG--MQRSAGLYGSLIVDVADGEK--EPFH----Y-DG----EFNLLLS-DWW---HRSVHE--QE 181 (580)
Q Consensus 125 ~~-G---t~wYH~H~~--~~~~~Gl~G~liV~~~~~~~--~p~~----~-d~----e~~l~~~-d~~---~~~~~~--~~ 181 (580)
++ | .||...-.. .+...+ . +++..+..... .|.. + +. +....+. ... ...... ..
T Consensus 268 ~~~g~~~~Y~i~a~~~~~~~~~~~-~-ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~ 345 (545)
T PLN02168 268 DPVGIYRSYYIVATARFTDAYLGG-V-ALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYH 345 (545)
T ss_pred CCCCCcceEEEEEEecccCCCcce-E-EEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCccccc
Confidence 43 4 799887632 222222 2 44444322111 1111 0 10 1100000 000 000000 00
Q ss_pred hhhcCCCCCC--C------CCCceEEeCccCCCC--ccc-ccc-ccCCCcc-cccccCCC-----CCCceEEEEecCCEE
Q 008038 182 VGLSSRPLRW--I------GEPQTLLINGRGQFN--CSL-AAH-FSNGSAE-QCKLRGNE-----QCAPQILHVQPNKTY 243 (580)
Q Consensus 182 ~~~~~~~~~~--~------~~~~~~liNG~~~~~--~~~-~~~-~~~~~~~-~~~~~~~~-----~~~~~~~~v~~Ge~~ 243 (580)
.........+ . .....+.|||..+.. .++ ... |...+.. .-++.... ......+.++.|+.|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~V 425 (545)
T PLN02168 346 YGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFY 425 (545)
T ss_pred ccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEE
Confidence 0000000000 0 001357788887541 111 000 1000000 00000000 001235788899999
Q ss_pred EEEEeecCCceeEEEEEeCeeeEEEEE-----CC------cccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 008038 244 RLRIASTTALASLNLAVKNHKMVVVEA-----DG------NYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311 (580)
Q Consensus 244 rlRliNag~~~~~~~~i~gh~~~via~-----DG------~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~ 311 (580)
.+=|-|... ..|.||+|||.|+|++. |+ +...|...|++.+.++.=+-+-+++++ +|.|.||||.
T Consensus 426 eiViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN--PG~Wl~HCHi 501 (545)
T PLN02168 426 HIVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDN--QGMWNVRSQK 501 (545)
T ss_pred EEEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccC--CeEEeeeecC
Confidence 998888754 47999999999999976 21 224688899999999999999999988 9999999995
No 36
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.94 E-value=1e-09 Score=98.51 Aligned_cols=90 Identities=22% Similarity=0.409 Sum_probs=73.0
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCC-------------CC-CccccCCCCCeEEEEEEcCCC
Q 008038 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGT-------------AS-ISQCPINPGETYLYRFKVDKA 126 (580)
Q Consensus 61 gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~-------------~~-~~q~~i~pG~~~~y~f~~~~~ 126 (580)
.+.+.++.|+.+++++.|. ...++++|+||.........++. +. ..-..|.||+..+.+|+++.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~-~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNN-GSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEEC-TTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETST
T ss_pred cceEEEeCCCEEEEEEECC-CCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecc
Confidence 3899999999999999998 78899999999876321111111 11 123578899999999999999
Q ss_pred cceeeecCcchhhccccEEEEEEEc
Q 008038 127 GTYFYHGHLGMQRSAGLYGSLIVDV 151 (580)
Q Consensus 127 Gt~wYH~H~~~~~~~Gl~G~liV~~ 151 (580)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999976
No 37
>PLN02604 oxidoreductase
Probab=98.91 E-value=2.8e-08 Score=109.43 Aligned_cols=244 Identities=13% Similarity=0.119 Sum_probs=133.3
Q ss_pred eEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEE-EEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 008038 233 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311 (580)
Q Consensus 233 ~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~ 311 (580)
++++++.|++++++|.|......+.+|.||+...- ...||.+ .+....|.||+++++.+++++ +|+||+|+|.
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~----~~tq~~i~pg~s~~y~f~~~~--~Gt~wyH~H~ 128 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTE----GVTQCPILPGETFTYEFVVDR--PGTYLYHAHY 128 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCC----ccccCccCCCCeEEEEEEcCC--CEEEEEeeCc
Confidence 47999999999999999865557889999985422 1258853 234568999999999999976 9999999996
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCcceEEEEEeeeeecCCeEEE
Q 008038 312 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 391 (580)
Q Consensus 312 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~ 391 (580)
.... .....+.|.+.+...... |. .+ +.+. ...+..-. ..........+. .............
T Consensus 129 ~~q~--~~Gl~G~liV~~~~~~~~-----p~--~~-d~d~----~l~l~Dw~--~~~~~~~~~~~~-~~~~~~~~~~d~~ 191 (566)
T PLN02604 129 GMQR--EAGLYGSIRVSLPRGKSE-----PF--SY-DYDR----SIILTDWY--HKSTYEQALGLS-SIPFDWVGEPQSL 191 (566)
T ss_pred HHHH--hCCCeEEEEEEecCCCCC-----cc--cc-Ccce----EEEeeccc--cCCHHHHHHhhc-cCCCccCCCCCce
Confidence 4321 223344444442211000 00 00 0000 00000000 000000000000 0000000001122
Q ss_pred EEccee-ccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCC
Q 008038 392 AINNVS-LTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNL 470 (580)
Q Consensus 392 ~iNg~~-~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~ 470 (580)
.|||+- +.... ...+... + ....+.+.......+.++.|++++|+|+|.+..
T Consensus 192 liNG~G~~~~~~-----------------~~~~~~~--~----~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~---- 244 (566)
T PLN02604 192 LIQGKGRYNCSL-----------------VSSPYLK--A----GVCNATNPECSPYVLTVVPGKTYRLRISSLTAL---- 244 (566)
T ss_pred EEcCCCCCCCcc-----------------ccCcccc--c----cccccCCCCCCceEEEecCCCEEEEEEEecccc----
Confidence 344431 10000 0000000 0 000000000112257899999999999998754
Q ss_pred CCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecC-ce-eeEEeeec
Q 008038 471 SEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG-AWAFHCHI 538 (580)
Q Consensus 471 ~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn-pG-~w~~HCHi 538 (580)
...-|+|-||+|+|++..+ . +..|..-|.+.|.+|+++-|.++++. +| .|-++...
T Consensus 245 -~~~~~sidgH~~~VIa~DG-~----------~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 245 -SALSFQIEGHNMTVVEADG-H----------YVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred -ceEEEEECCCEEEEEEeCC-E----------ecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 2788999999999999733 2 23477889999999999999999975 55 56666543
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.89 E-value=6e-08 Score=106.69 Aligned_cols=244 Identities=14% Similarity=0.154 Sum_probs=130.8
Q ss_pred eEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEE-EEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 008038 233 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311 (580)
Q Consensus 233 ~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~ 311 (580)
|+|+++.|+++++++.|.-......+|.||....- -..||.+ .+..-.|.||+.+.+.+++++ .|+||+|+|.
T Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~----gvtq~pI~PG~s~~Y~f~~~~--~GT~wYHsH~ 127 (574)
T PLN02191 54 PTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAA----GVTQCAINPGETFTYKFTVEK--PGTHFYHGHY 127 (574)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCC----ccccCCcCCCCeEEEEEECCC--CeEEEEeeCc
Confidence 58999999999999999865456788888875432 2368874 223356999999999999976 8999999996
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCcceEEEEEeeee-ecCCeEE
Q 008038 312 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQN-TINGFTK 390 (580)
Q Consensus 312 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~-~~~~~~~ 390 (580)
.... .....|.|.+.+... +.. +. .++ .+....+..-+- ...+ .....+..... .......
T Consensus 128 ~~q~--~~Gl~G~liV~~~~~---~~~--~~--~~d-----~e~~l~l~Dw~~-~~~~---~~~~~~~~~~~~~~~~~d~ 189 (574)
T PLN02191 128 GMQR--SAGLYGSLIVDVAKG---PKE--RL--RYD-----GEFNLLLSDWWH-ESIP---SQELGLSSKPMRWIGEAQS 189 (574)
T ss_pred HHHH--hCCCEEEEEEccCCC---CCC--CC--CCC-----eeEEEeeecccc-CChH---HHHHhhccCCCCcCCCCCc
Confidence 3322 222334444432111 000 00 000 000000000000 0000 00000000000 0000112
Q ss_pred EEEccee-ccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCC
Q 008038 391 WAINNVS-LTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 469 (580)
Q Consensus 391 ~~iNg~~-~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~ 469 (580)
..|||+. +........ ..+ ..+. .+ .+. .+......++.++.|++++|+|+|.+..
T Consensus 190 ~liNG~g~~~~~~~~~~------~~~-----~~~~-~~-~~~-------~n~~~~p~~~~v~~G~~yRlRiINa~~~--- 246 (574)
T PLN02191 190 ILINGRGQFNCSLAAQF------SNG-----TELP-MC-TFK-------EGDQCAPQTLRVEPNKTYRIRLASTTAL--- 246 (574)
T ss_pred eEECCCCCCCCcccccc------cCC-----cccc-cc-eec-------cCCCCCceEEEEcCCCEEEEEEEecCCc---
Confidence 3455431 100000000 000 0000 00 000 0000111258899999999999998754
Q ss_pred CCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecC-ce-eeEEee
Q 008038 470 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG-AWAFHC 536 (580)
Q Consensus 470 ~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn-pG-~w~~HC 536 (580)
..+-|+|.||+|.|++.. |. +..|...|.+.|.+|++.-|.++++. +| .|-++-
T Consensus 247 --~~~~~~idgH~~tVIa~D-G~----------~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira 302 (574)
T PLN02191 247 --ASLNLAVQGHKLVVVEAD-GN----------YITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISV 302 (574)
T ss_pred --eeEEEEECCCeEEEEEcC-Ce----------eccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEE
Confidence 278899999999999973 32 23577889999999999999999985 44 444443
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.76 E-value=5e-07 Score=98.97 Aligned_cols=228 Identities=11% Similarity=0.087 Sum_probs=128.4
Q ss_pred eEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEE-EECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 008038 233 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVV-EADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 311 (580)
Q Consensus 233 ~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~ 311 (580)
|+|+++.|+++++++.|-.. ....+|.||..+... ..||.+ . ..-.|.||++++..+++++ +.|+||.|+|.
T Consensus 60 PtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sftY~F~~~d-q~GT~WYHsH~ 132 (596)
T PLN00044 60 PALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWTYQFQVKD-QVGSFFYAPST 132 (596)
T ss_pred CcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCCC---C--CcCCcCCCCcEEEEEEeCC-CCceeEeeccc
Confidence 58999999999999999875 467888888665443 479973 2 3468999999999999963 48999999986
Q ss_pred cCCCCCCCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCcceEEEEEeeeeecCCeEEE
Q 008038 312 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 391 (580)
Q Consensus 312 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~ 391 (580)
.... ....+|-|.+.+..... .| .+...+. +....+.+-. ........+. +... .........
T Consensus 133 ~~Q~--~~Gl~GalII~~~~~~~-----~P-~~~~~~~----e~~i~l~DW~--~~~~~~~~~~--l~~g-~~~~~~d~~ 195 (596)
T PLN00044 133 ALHR--AAGGYGAITINNRDVIP-----IP-FGFPDGG----DITLFIADWY--ARDHRALRRA--LDAG-DLLGAPDGV 195 (596)
T ss_pred hhhh--hCcCeeEEEEcCccccc-----cc-ccCCccc----ceEEEecccc--cCCHHHHHHH--HhcC-CCCCCCCce
Confidence 4322 12233333333211100 00 0000000 0000000000 0000000000 0000 000000011
Q ss_pred EEcceeccCCCCCcchhhhccCCccCCCCCCCCCCCCCcccCCCCCCCCccCCceeEEccCCcEEEEEEEcCCCCCCCCC
Q 008038 392 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLS 471 (580)
Q Consensus 392 ~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~l~N~~~~~~~~~ 471 (580)
.|||+.- +. + +... ........++.++.|++++|+|+|.+..
T Consensus 196 lING~g~------------------~~-----------~---n~~~-~~~~~~~~~i~V~~Gk~yRlRiINaa~~----- 237 (596)
T PLN00044 196 LINAFGP------------------YQ-----------Y---NDSL-VPPGITYERINVDPGKTYRFRVHNVGVA----- 237 (596)
T ss_pred EEcccCc------------------cc-----------c---CCcc-ccCCCccceEEECCCCEEEEEEEEccCC-----
Confidence 2333210 00 0 0000 0000011258899999999999997754
Q ss_pred CCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEecCc-e--eeE
Q 008038 472 EIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNP-G--AWA 533 (580)
Q Consensus 472 ~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnp-G--~w~ 533 (580)
...-|+|-||+|.|++.. |.+ ..|...|.+.|.+|++.-+.++++.+ | .||
T Consensus 238 ~~~~fsIdgH~mtVIa~D-G~~----------v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 238 TSLNFRIQGHNLLLVEAE-GSY----------TSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred ceEEEEECCCEEEEEEeC-Ccc----------cCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 268899999999999973 433 35778899999999999999999864 5 466
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.68 E-value=2.4e-08 Score=86.49 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=67.6
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
++.++.|+.|++.+.|.... .+.+|+||...---...+|. . .. -...|.||+..+.+|++
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~------~~siH~HG~~~~~~~~~DG~-------~------~~-~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDE------PTSIHWHGLHQPPSPWMDGV-------P------GV-TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEETTEEEEEEEEEESSS------GBSEEEETSBSTTGGGGSGG-------T------TT-SGSSBSTTEEEEEEEEE
T ss_pred EEEEEcCCeeEEEEEecccc------ccccccceeeeeeeeecCCc-------c------cc-cceeEEeecceeeeEee
Confidence 59999999999999997655 89999999754111001111 0 00 11358889999999999
Q ss_pred cC-ceeeEEeeecchhhhcccEEEEecccc
Q 008038 527 DN-PGAWAFHCHIEPHFHIGMGVVLALGVE 555 (580)
Q Consensus 527 dn-pG~w~~HCHil~H~d~GM~~~~~~~~~ 555 (580)
+. +|.|.||||...|...||.+.|.+.++
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999987653
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.54 E-value=1.3e-06 Score=75.88 Aligned_cols=74 Identities=28% Similarity=0.470 Sum_probs=56.2
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchhhc
Q 008038 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRS 140 (580)
Q Consensus 61 gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~ 140 (580)
.+.|++++||+| +++|. ...+|++.+.|... .. .+...+.||+++++.|.. +|+|-|+|- .|..
T Consensus 46 P~~i~v~~Gd~V--~~~N~-~~~~H~v~~~~~~~--------~~-~~~~~~~pg~t~~~tF~~--~G~y~y~C~--~H~~ 109 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNN-KLAPHNAVFDGAKE--------LS-HKDLAFAPGESWEETFSE--AGTYTYYCE--PHRG 109 (119)
T ss_pred CCEEEEcCCCEE--EEEEC-CCCCceEEecCCcc--------cc-ccccccCCCCEEEEEecC--CEEEEEEcC--CCcc
Confidence 478999999985 56787 66788887764311 00 112357899999999975 999999997 6667
Q ss_pred cccEEEEEEE
Q 008038 141 AGLYGSLIVD 150 (580)
Q Consensus 141 ~Gl~G~liV~ 150 (580)
.||.|.|+|+
T Consensus 110 ~gM~G~I~V~ 119 (119)
T PRK02710 110 AGMVGKITVE 119 (119)
T ss_pred CCcEEEEEEC
Confidence 8999999984
No 42
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=4.2e-05 Score=83.15 Aligned_cols=280 Identities=16% Similarity=0.137 Sum_probs=153.3
Q ss_pred ceEEEEEEEEEEEeC------------CCCce--eEEEEEcCCCCC-----CeEEecCCCEEEEEEEeCCCCCceeeeec
Q 008038 30 KTRHYKWEVEYMFWS------------PDCKE--SIVMGINGQFPG-----PTIRARAGDTIAVELTNKLYTEGVVIHWH 90 (580)
Q Consensus 30 ~~~~~~l~~~~~~~~------------~~g~~--~~~~~~NG~~pg-----P~l~v~~Gd~v~v~v~N~l~~~~~siH~H 90 (580)
..+|+.|.+++=.-+ ..+.. -...++||+-.- ++|.+++|++.++|+.|..+ ..++++.
T Consensus 158 pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~--~~~l~F~ 235 (563)
T KOG1263|consen 158 PDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGL--NTSLNFS 235 (563)
T ss_pred CCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEcccc--ccceEEE
Confidence 567888888752211 11212 357899998421 68999999999999999944 3444444
Q ss_pred --cccccCCCCCCCCC---C-CccccCCCCCeEEEEEEc-CCCcceeeecCcchhhc---cccEEEEEEEcCCC-----C
Q 008038 91 --GIRQLGTPWADGTA---S-ISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRS---AGLYGSLIVDVADG-----E 155 (580)
Q Consensus 91 --G~~~~~~~~~DG~~---~-~~q~~i~pG~~~~y~f~~-~~~Gt~wYH~H~~~~~~---~Gl~G~liV~~~~~-----~ 155 (580)
|..... ...||.- . .....|.|||++++-.++ +.++.||+-.....+.. .=+.+..+++-..+ .
T Consensus 236 I~~H~ltv-Ve~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~ 314 (563)
T KOG1263|consen 236 IANHQLTV-VEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASE 314 (563)
T ss_pred ECCeEEEE-EEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcc
Confidence 433322 4567743 2 234678999999999999 66778998877543321 11333333332221 0
Q ss_pred CCC------CCCCcceEEEEee----c----ccCchHH-HHhh--------hcCCCCC-CCCCCceEEeCccCCCCcc--
Q 008038 156 KEP------FHYDGEFNLLLSD----W----WHRSVHE-QEVG--------LSSRPLR-WIGEPQTLLINGRGQFNCS-- 209 (580)
Q Consensus 156 ~~p------~~~d~e~~l~~~d----~----~~~~~~~-~~~~--------~~~~~~~-~~~~~~~~liNG~~~~~~~-- 209 (580)
..| ...+....+-... . ......+ .... ....... .........||+..+..-.
T Consensus 315 ~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp 394 (563)
T KOG1263|consen 315 KLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTP 394 (563)
T ss_pred cCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCc
Confidence 000 0001000000000 0 0000000 0000 0000000 0011223445554332110
Q ss_pred --ccccccCC-----Cccccccc--CC--C-CCCceEEEEecCCEEEEEEeecCCce--eEEEEEeCeeeEEEEECCc-c
Q 008038 210 --LAAHFSNG-----SAEQCKLR--GN--E-QCAPQILHVQPNKTYRLRIASTTALA--SLNLAVKNHKMVVVEADGN-Y 274 (580)
Q Consensus 210 --~~~~~~~~-----~~~~~~~~--~~--~-~~~~~~~~v~~Ge~~rlRliNag~~~--~~~~~i~gh~~~via~DG~-~ 274 (580)
+++.|... ....|... .+ + ......++++-++.+.+=|-|.+... .|.+|+|||.|.|++.+.+ .
T Consensus 395 ~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~ 474 (563)
T KOG1263|consen 395 SLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNW 474 (563)
T ss_pred hhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEeccccc
Confidence 01111111 11123210 00 0 12334688989999999999988552 3667999999999999432 1
Q ss_pred ------------cCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecCC
Q 008038 275 ------------VQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGR 314 (580)
Q Consensus 275 ------------v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~~ 314 (580)
..|+..++|.|.||.=.-+.+.+++ +|-|.||||....
T Consensus 475 ~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adN--PG~W~~HCHie~H 524 (563)
T KOG1263|consen 475 DPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADN--PGVWLMHCHIEDH 524 (563)
T ss_pred CcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCC--CcEEEEEEecHHH
Confidence 1366789999999999999999998 9999999997554
No 43
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.39 E-value=1.3e-06 Score=73.30 Aligned_cols=84 Identities=26% Similarity=0.364 Sum_probs=58.8
Q ss_pred CCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCC--ccccCCCCCeEEEEEEcCCCcceeeecCcc
Q 008038 59 FPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASI--SQCPINPGETYLYRFKVDKAGTYFYHGHLG 136 (580)
Q Consensus 59 ~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~--~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~ 136 (580)
|-...|++++||+| +++|. ...++++.++...... ...+..+.. +...+.||+++++.|.. +|+|.|+|.
T Consensus 14 F~P~~i~v~~G~~V--~~~N~-~~~~H~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~y~C~-- 85 (99)
T TIGR02656 14 FEPAKISIAAGDTV--EWVNN-KGGPHNVVFDEDAVPA-GVKELAKSLSHKDLLNSPGESYEVTFST--PGTYTFYCE-- 85 (99)
T ss_pred EeCCEEEECCCCEE--EEEEC-CCCCceEEECCCCCcc-chhhhcccccccccccCCCCEEEEEeCC--CEEEEEEcC--
Confidence 33578999999986 55687 5678888876432210 000001111 23457899999998875 999999998
Q ss_pred hhhccccEEEEEEE
Q 008038 137 MQRSAGLYGSLIVD 150 (580)
Q Consensus 137 ~~~~~Gl~G~liV~ 150 (580)
.+...||.|.|+|+
T Consensus 86 ~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 86 PHRGAGMVGKITVE 99 (99)
T ss_pred CccccCCEEEEEEC
Confidence 78888999999984
No 44
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.28 E-value=1.7e-06 Score=73.52 Aligned_cols=73 Identities=26% Similarity=0.354 Sum_probs=47.7
Q ss_pred CCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchh
Q 008038 59 FPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQ 138 (580)
Q Consensus 59 ~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~ 138 (580)
+-...|+++.|+.|+|+++|. ...++.+...++.. ...|.||++.++.|++.++|+|=|+|-...
T Consensus 32 f~P~~i~v~~G~~v~l~~~N~-~~~~h~~~i~~~~~-------------~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~- 96 (104)
T PF13473_consen 32 FSPSTITVKAGQPVTLTFTNN-DSRPHEFVIPDLGI-------------SKVLPPGETATVTFTPLKPGEYEFYCTMHP- 96 (104)
T ss_dssp EES-EEEEETTCEEEEEEEE--SSS-EEEEEGGGTE-------------EEEE-TT-EEEEEEEE-S-EEEEEB-SSS--
T ss_pred EecCEEEEcCCCeEEEEEEEC-CCCcEEEEECCCce-------------EEEECCCCEEEEEEcCCCCEEEEEEcCCCC-
Confidence 334689999999999999999 67777776666433 247999999999999999999999998555
Q ss_pred hccccEEEEEE
Q 008038 139 RSAGLYGSLIV 149 (580)
Q Consensus 139 ~~~Gl~G~liV 149 (580)
. |.|.|+|
T Consensus 97 --~-m~G~liV 104 (104)
T PF13473_consen 97 --N-MKGTLIV 104 (104)
T ss_dssp --T-TB-----
T ss_pred --c-ceecccC
Confidence 2 6676665
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.18 E-value=5.3e-06 Score=69.71 Aligned_cols=84 Identities=27% Similarity=0.328 Sum_probs=56.5
Q ss_pred CCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCC-CCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchh
Q 008038 60 PGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPW-ADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQ 138 (580)
Q Consensus 60 pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~-~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~ 138 (580)
-.+.|++++||+| ++.|. ...+|++.+=--....... ....+.-....+.||+++++.|+ ++|+|.|+|- . |
T Consensus 15 ~P~~i~V~~G~tV--~~~n~-~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H 87 (99)
T PF00127_consen 15 DPSEITVKAGDTV--TFVNN-DSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--KPGTYEYYCT-P-H 87 (99)
T ss_dssp ESSEEEEETTEEE--EEEEE-SSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--SSEEEEEEET-T-T
T ss_pred eCCEEEECCCCEE--EEEEC-CCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC--CCeEEEEEcC-C-C
Confidence 3478999999985 56665 4567777664311000000 00000002235789999999998 8999999999 5 8
Q ss_pred hccccEEEEEEE
Q 008038 139 RSAGLYGSLIVD 150 (580)
Q Consensus 139 ~~~Gl~G~liV~ 150 (580)
...||.|.|+|+
T Consensus 88 ~~~GM~G~i~V~ 99 (99)
T PF00127_consen 88 YEAGMVGTIIVE 99 (99)
T ss_dssp GGTTSEEEEEEE
T ss_pred cccCCEEEEEEC
Confidence 889999999996
No 46
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.08 E-value=1.4e-05 Score=72.03 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=58.5
Q ss_pred eEEccCCcEEEEEEEcCCC-CCCCCCCCCCeeecCCCeEE--EeecCCCCCcccccccCCCCCCccceEEeCC---C--c
Q 008038 447 VYMLGLNTTVDVILQNANA-IRPNLSEIHPWHLHGHDFWV--LGRGEGKFTKEDEKKFNLKNPPLKNTAVIFP---Y--G 518 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~-~~~~~~~~HP~HlHG~~F~v--v~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp---~--g 518 (580)
.+.++.|+.|++++.|... . .|.|-||.+.-.. ....+| .+.....-.+|+ | +
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~------~H~~~I~~~g~~~~~~p~mdG-------------~~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDS------GHNFDISKRGPPYPYMPGMDG-------------LGFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCc------cccEEeecCCCccccccccCC-------------CCccccCcccCCCCCCccc
Confidence 4899999999999999754 3 6777777432211 000000 011112222232 2 2
Q ss_pred EEEEEEEecCceeeEEeeecchhhhcccEEEEec
Q 008038 519 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 552 (580)
Q Consensus 519 ~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~ 552 (580)
+..+.|+++.+|.|.||||+..|...||.+.|.+
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 4678888899999999999999999999999865
No 47
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.96 E-value=0.00017 Score=65.14 Aligned_cols=97 Identities=21% Similarity=0.213 Sum_probs=74.1
Q ss_pred EEEEcCCCCC-CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCC-------CCCCCCC----CCc-----cccCCCC
Q 008038 52 VMGINGQFPG-PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGT-------PWADGTA----SIS-----QCPINPG 114 (580)
Q Consensus 52 ~~~~NG~~pg-P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~-------~~~DG~~----~~~-----q~~i~pG 114 (580)
.+-|||+..| ++|.+..|=+|.|+++|. ...+|++-. +.. .+ ...||.. |.+ -..|.+|
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~-e~~pHnl~i--v~n-~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNY-ESLPHNLKL--LPN-STQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcC-CCCCccEEE--ecC-CCCCCCccccccCceeEeecccccCcccccccccc
Confidence 3677898888 999999999999999999 677877765 221 12 2235532 222 1345678
Q ss_pred CeEEEEEEcCCCcceeeecCcchhhccccEEEEEEEcC
Q 008038 115 ETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVA 152 (580)
Q Consensus 115 ~~~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 152 (580)
++..-.|..-++|+|||-|-...|..+||+|.+||-..
T Consensus 150 qs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 150 HSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred ceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 88777777789999999999999999999999999864
No 48
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.95 E-value=2.9e-05 Score=71.30 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=71.7
Q ss_pred eeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 008038 446 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 525 (580)
Q Consensus 446 ~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 525 (580)
..+.++.|++++|+|.|.+.. ..+.|++.||+|.|++.. |.+ ..|...|++.|.+|+++-|.++
T Consensus 60 ~~~~v~~g~~~rlRliNa~~~-----~~~~~~i~gh~~~Via~D-G~~----------v~p~~~~~l~l~~G~R~dvlv~ 123 (159)
T PF00394_consen 60 PVIKVKPGERYRLRLINAGAS-----TSFNFSIDGHPMTVIAAD-GVP----------VEPYKVDTLVLAPGQRYDVLVT 123 (159)
T ss_dssp GEEEEETTTEEEEEEEEESSS------BEEEEETTBCEEEEEET-TEE----------EEEEEESBEEE-TTEEEEEEEE
T ss_pred ceEEEcCCcEEEEEEEeccCC-----eeEEEEeeccceeEeeec-ccc----------ccccccceEEeeCCeEEEEEEE
Confidence 359999999999999997654 279999999999999983 321 1267789999999999999999
Q ss_pred ecC-ceeeEEee----ecchhhhcccEEEE
Q 008038 526 ADN-PGAWAFHC----HIEPHFHIGMGVVL 550 (580)
Q Consensus 526 adn-pG~w~~HC----Hil~H~d~GM~~~~ 550 (580)
++. +|.|.+++ +...+...|+..-+
T Consensus 124 ~~~~~g~y~i~~~~~~~~~~~~~~~~~~ai 153 (159)
T PF00394_consen 124 ADQPPGNYWIRASYQHDSINDPQNGNALAI 153 (159)
T ss_dssp ECSCSSEEEEEEEESSSSSHSHGGGTTEEE
T ss_pred eCCCCCeEEEEEecccCCCccCCCcEEEEE
Confidence 987 99999999 55666777765544
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=6e-05 Score=81.68 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=68.3
Q ss_pred eCCCCceeE--EEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEE
Q 008038 43 WSPDCKESI--VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYR 120 (580)
Q Consensus 43 ~~~~g~~~~--~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~ 120 (580)
+..+|.... +....-.|--+.|+|++||.|.++|+|. ....=. .||..+.+. |. ..-+.||++.+..
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~-d~~~DV--iHGF~Ip~~----nI----~~dv~PG~t~svt 602 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNL-DKVEDL--THGFAIPNY----GV----NMEVAPQATASVT 602 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeC-Cccccc--ccceeeccc----Cc----cEEEcCCceEEEE
Confidence 445664443 4566666756789999999999999995 211111 155544221 11 3457899999999
Q ss_pred EEcCCCcceeeecCc---chhhccccEEEEEEEcC
Q 008038 121 FKVDKAGTYFYHGHL---GMQRSAGLYGSLIVDVA 152 (580)
Q Consensus 121 f~~~~~Gt~wYH~H~---~~~~~~Gl~G~liV~~~ 152 (580)
|+++++|+|||||.. ..| .+|.|.|+|+++
T Consensus 603 F~adkPGvy~~~CtefCGa~H--~~M~G~~iVep~ 635 (635)
T PRK02888 603 FTADKPGVYWYYCTWFCHALH--MEMRGRMLVEPK 635 (635)
T ss_pred EEcCCCEEEEEECCcccccCc--ccceEEEEEEeC
Confidence 999999999999983 344 479999999873
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.89 E-value=0.00023 Score=65.74 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=76.1
Q ss_pred EEEEcCCCCC-CeEEecCCCEEEEEEEeCCCCCceeeeec--cccc--cCCCCCCCCC----CC-----ccccCCCCCeE
Q 008038 52 VMGINGQFPG-PTIRARAGDTIAVELTNKLYTEGVVIHWH--GIRQ--LGTPWADGTA----SI-----SQCPINPGETY 117 (580)
Q Consensus 52 ~~~~NG~~pg-P~l~v~~Gd~v~v~v~N~l~~~~~siH~H--G~~~--~~~~~~DG~~----~~-----~q~~i~pG~~~ 117 (580)
.+-|||..-| ++|.+..|-+|.|+++|. ...+|++-.= +..+ ......||.- |. .-..|.+|++.
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~-~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQ-ESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcC-CCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 6788998777 899999999999999999 6666665433 1111 1123445522 11 22467899999
Q ss_pred EEEEEcCCCcceeeecCcchhhccccEEEEEEEcCC
Q 008038 118 LYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVAD 153 (580)
Q Consensus 118 ~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~ 153 (580)
.-.|..-++|+||+-|-...|..+||++-|+|...-
T Consensus 154 ~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 154 SGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred eEEEccCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 878877889999999999999999999999998753
No 51
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.63 E-value=0.0003 Score=56.94 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=50.3
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchhhc
Q 008038 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRS 140 (580)
Q Consensus 61 gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~ 140 (580)
.+.|++++||+| +++|. ...++++++..-... ..+ .....+.||+++++.| .++|+|-|||-...
T Consensus 10 P~~i~v~~GdtV--t~~N~-d~~~Hnv~~~~g~~~---~~~----~~~~~~~~g~~~~~tf--~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINR-EAMPHNVHFVAGVLG---EAA----LKGPMMKKEQAYSLTF--TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEE--EEEEC-CCCCccEEecCCCCc---ccc----ccccccCCCCEEEEEC--CCCEEEEEEcCCCC---
Confidence 478999999996 56788 567888887642110 011 0012356788877666 67999999996322
Q ss_pred cccEEEEEEE
Q 008038 141 AGLYGSLIVD 150 (580)
Q Consensus 141 ~Gl~G~liV~ 150 (580)
.|.|.++|+
T Consensus 75 -~M~G~v~V~ 83 (83)
T TIGR02657 75 -FMRGKVVVE 83 (83)
T ss_pred -CCeEEEEEC
Confidence 499999885
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.60 E-value=0.00025 Score=59.48 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=56.4
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|++|+|+ |.+.. .|.+.++...+..-.. .+ ......+++.+.||+...+.|..
T Consensus 19 i~v~~G~~V~~~--N~~~~------~H~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 19 ISIAAGDTVEWV--NNKGG------PHNVVFDEDAVPAGVK---EL----------AKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred EEECCCCEEEEE--ECCCC------CceEEECCCCCccchh---hh----------cccccccccccCCCCEEEEEeCC-
Confidence 899999999887 54444 7888776543221100 00 00122466788999998887664
Q ss_pred CceeeEEeeecchhhhcccEEEEec
Q 008038 528 NPGAWAFHCHIEPHFHIGMGVVLAL 552 (580)
Q Consensus 528 npG~w~~HCHil~H~d~GM~~~~~~ 552 (580)
||.|.|||- .|...||.+.+.|
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEE
Confidence 999999998 8999999999865
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.46 E-value=0.00057 Score=58.70 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=51.3
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCceeeee-ccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchhh
Q 008038 61 GPTIRARAGDTIAVELTNKLYTEGVVIHW-HGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQR 139 (580)
Q Consensus 61 gP~l~v~~Gd~v~v~v~N~l~~~~~siH~-HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~ 139 (580)
...|+|++||+|+....|. ++++.+ .+.. -+|... ..-.+|+++++.| +++|+|=|+|- .|.
T Consensus 14 P~~v~V~~GdTV~f~n~d~----~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF--~~~G~Y~Y~C~--pH~ 76 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK----GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV--TEEGVYGVKCT--PHY 76 (116)
T ss_pred CCEEEECCCCEEEEEECCC----CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe--CCCEEEEEEcC--CCc
Confidence 4789999999966555543 466554 2211 122211 1223566666666 68999999998 777
Q ss_pred ccccEEEEEEEcCCC
Q 008038 140 SAGLYGSLIVDVADG 154 (580)
Q Consensus 140 ~~Gl~G~liV~~~~~ 154 (580)
..||.|.|+|.+++.
T Consensus 77 ~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 77 GMGMVALIQVGDPPA 91 (116)
T ss_pred cCCCEEEEEECCCCc
Confidence 899999999987543
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.22 E-value=0.0014 Score=57.24 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=48.8
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|+.|+|.+.|.+.. .|.|-++++.+ ...|+||+...++|.++
T Consensus 63 I~VkaGD~Vtl~vtN~d~~------~H~f~i~~~gi---------------------------s~~I~pGet~TitF~ad 109 (135)
T TIGR03096 63 LVVKKGTPVKVTVENKSPI------SEGFSIDAYGI---------------------------SEVIKAGETKTISFKAD 109 (135)
T ss_pred EEECCCCEEEEEEEeCCCC------ccceEECCCCc---------------------------ceEECCCCeEEEEEECC
Confidence 8899999999999998765 77777665421 34678899999999999
Q ss_pred CceeeEEeeec
Q 008038 528 NPGAWAFHCHI 538 (580)
Q Consensus 528 npG~w~~HCHi 538 (580)
.||.|-|||-+
T Consensus 110 KpG~Y~y~C~~ 120 (135)
T TIGR03096 110 KAGAFTIWCQL 120 (135)
T ss_pred CCEEEEEeCCC
Confidence 99999999974
No 55
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.20 E-value=0.0029 Score=54.25 Aligned_cols=77 Identities=26% Similarity=0.397 Sum_probs=52.0
Q ss_pred CCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchh
Q 008038 59 FPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQ 138 (580)
Q Consensus 59 ~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~ 138 (580)
|-...|+|++||+|+ ++|+....+|++..-+ +..+ | .......+|++|++.| .++|+|-|+|- .|
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf--~~~G~Y~Y~C~--pH 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTF--EEPGIYLYVCV--PH 103 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEe--cCCcEEEEEcc--CC
Confidence 334789999999955 6654234667775421 0011 1 0112357899999988 57999999996 44
Q ss_pred hccccEEEEEEE
Q 008038 139 RSAGLYGSLIVD 150 (580)
Q Consensus 139 ~~~Gl~G~liV~ 150 (580)
...||.|.|+|+
T Consensus 104 ~~~gM~G~I~V~ 115 (115)
T TIGR03102 104 EALGMKGAVVVE 115 (115)
T ss_pred CCCCCEEEEEEC
Confidence 557899999984
No 56
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.19 E-value=0.0019 Score=56.05 Aligned_cols=75 Identities=23% Similarity=0.392 Sum_probs=53.0
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchhhcc
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSA 141 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~~ 141 (580)
-.|+|++||+ |++.|. ....|+++.-+... + +|.- ...-.+|+++++.|. .+|+|-|+|- -|+.+
T Consensus 54 A~v~v~pGDT--Vtw~~~-d~~~Hnv~~~~~~~---~--~g~~---~~~~~~~~s~~~Tfe--~~G~Y~Y~C~--PH~~~ 118 (128)
T COG3794 54 AEVTVKPGDT--VTWVNT-DSVGHNVTAVGGMD---P--EGSG---TLKAGINESFTHTFE--TPGEYTYYCT--PHPGM 118 (128)
T ss_pred cEEEECCCCE--EEEEEC-CCCCceEEEeCCCC---c--cccc---ccccCCCcceEEEec--ccceEEEEec--cCCCC
Confidence 4799999999 677888 55588887766541 1 2321 233445577777664 5999999994 34568
Q ss_pred ccEEEEEEEc
Q 008038 142 GLYGSLIVDV 151 (580)
Q Consensus 142 Gl~G~liV~~ 151 (580)
||.|.|+|++
T Consensus 119 gM~G~IvV~~ 128 (128)
T COG3794 119 GMKGKIVVGE 128 (128)
T ss_pred CcEEEEEeCC
Confidence 9999999974
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.55 E-value=0.016 Score=48.58 Aligned_cols=80 Identities=16% Similarity=0.342 Sum_probs=52.8
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCc-ccccccCCCCCCccceEEeCCCcEEEEEEE
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTK-EDEKKFNLKNPPLKNTAVIFPYGWTALRFV 525 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~-~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 525 (580)
.+.++.|++|.|+..+ .. .|.+++ ... .++. .+..... ..-.+..+.+|....+.|.
T Consensus 18 ~i~V~~G~tV~~~n~~--~~------~Hnv~~-------~~~---~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~ 75 (99)
T PF00127_consen 18 EITVKAGDTVTFVNND--SM------PHNVVF-------VAD---GMPAGADSDYVP----PGDSSPLLAPGETYSVTFT 75 (99)
T ss_dssp EEEEETTEEEEEEEES--SS------SBEEEE-------ETT---SSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE
T ss_pred EEEECCCCEEEEEECC--CC------CceEEE-------ecc---cccccccccccC----ccccceecCCCCEEEEEeC
Confidence 3889999999987653 33 455443 321 1100 0011110 1115677888998888777
Q ss_pred ecCceeeEEeeecchhhhcccEEEEec
Q 008038 526 ADNPGAWAFHCHIEPHFHIGMGVVLAL 552 (580)
Q Consensus 526 adnpG~w~~HCHil~H~d~GM~~~~~~ 552 (580)
.+|.|.|+|- - |...||-+.+.|
T Consensus 76 --~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 76 --KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp --SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred --CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 9999999999 5 999999999865
No 58
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.41 E-value=0.012 Score=49.66 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=42.8
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.+.+.+.|.+.. .|-|.+-+ . .-...|+||+...+.|.+
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~------~h~~~i~~-------~--------------------~~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSR------PHEFVIPD-------L--------------------GISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-------EEEEEGG-------G--------------------TEEEEE-TT-EEEEEEEE
T ss_pred EEEEcCCCeEEEEEEECCCC------cEEEEECC-------C--------------------ceEEEECCCCEEEEEEcC
Confidence 38999999999999998754 44444443 1 123678899999999999
Q ss_pred cCceeeEEeeecchhhhcccE
Q 008038 527 DNPGAWAFHCHIEPHFHIGMG 547 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~GM~ 547 (580)
+.||.|-|+|-+-.+ ..|..
T Consensus 83 ~~~G~y~~~C~~~~~-m~G~l 102 (104)
T PF13473_consen 83 LKPGEYEFYCTMHPN-MKGTL 102 (104)
T ss_dssp -S-EEEEEB-SSS-T-TB---
T ss_pred CCCEEEEEEcCCCCc-ceecc
Confidence 999999999995554 35543
No 59
>PRK02710 plastocyanin; Provisional
Probab=95.93 E-value=0.035 Score=48.17 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=49.9
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|++|+|+ |.+.. .|.+.+.+... + .. .-..+.||....+.|..
T Consensus 49 i~v~~Gd~V~~~--N~~~~------~H~v~~~~~~~---------~-------------~~-~~~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 49 LTIKAGDTVKWV--NNKLA------PHNAVFDGAKE---------L-------------SH-KDLAFAPGESWEETFSE- 96 (119)
T ss_pred EEEcCCCEEEEE--ECCCC------CceEEecCCcc---------c-------------cc-cccccCCCCEEEEEecC-
Confidence 889999999885 54444 78776542210 0 00 11346788887777764
Q ss_pred CceeeEEeeecchhhhcccEEEEec
Q 008038 528 NPGAWAFHCHIEPHFHIGMGVVLAL 552 (580)
Q Consensus 528 npG~w~~HCHil~H~d~GM~~~~~~ 552 (580)
||.|.|+|= .|...||-+.+.|
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEE
Confidence 999999997 8999999999876
No 60
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=95.74 E-value=0.065 Score=46.52 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhh
Q 008038 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQR 139 (580)
Q Consensus 61 gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~ 139 (580)
.+.|.+..|+.|++.+++. +..|++...++.. +.-+.||+.-...|+++++|+|++.|.- -...
T Consensus 45 ~~~l~lp~g~~v~~~ltS~--DViHsf~ip~~~~-------------k~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE--DVIHSFWIPELGI-------------KMDAIPGRTNSVTFTPDKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES--SS-EEEEETTCTE-------------EEEEBTTCEEEEEEEESSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC--CccccccccccCc-------------ccccccccceeeeeeeccCCcEEEcCccccCcC
Confidence 4789999999999999998 5556655554432 3457899999999999999999999982 1111
Q ss_pred ccccEEEEEE
Q 008038 140 SAGLYGSLIV 149 (580)
Q Consensus 140 ~~Gl~G~liV 149 (580)
-.-|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 1336666654
No 61
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.59 E-value=0.046 Score=59.88 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=54.2
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
-+.++.|+.|.+++.|.... .+..|-|-+-++.. -+.+.||....+.|++
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~---~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~a 605 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKV---EDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTA 605 (635)
T ss_pred eEEecCCCEEEEEEEeCCcc---cccccceeecccCc---------------------------cEEEcCCceEEEEEEc
Confidence 37789999999999996431 12256666633321 2356689999999999
Q ss_pred cCceeeEEeeecchhhh-cccEEEEeccc
Q 008038 527 DNPGAWAFHCHIEPHFH-IGMGVVLALGV 554 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d-~GM~~~~~~~~ 554 (580)
+.||.|.+||...-|.. .+|.+.+.|.+
T Consensus 606 dkPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 606 DKPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCCEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999998633221 36777776643
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.06 Score=47.88 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=65.9
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
..++.|++++.++.|.... -|=|-+- ++.... +.+.- .....-..---..++.|.||....+-+.+.
T Consensus 65 ~~v~aG~tv~~v~~n~~el------~hef~~~---~~~~~~--~~~~~--~~~~~Dme~d~~~~v~L~PG~s~elvv~ft 131 (158)
T COG4454 65 FEVKAGETVRFVLKNEGEL------KHEFTMD---APDKNL--EHVTH--MILADDMEHDDPNTVTLAPGKSGELVVVFT 131 (158)
T ss_pred ccccCCcEEeeeecCcccc------eEEEecc---Cccccc--hhHHH--hhhCCccccCCcceeEeCCCCcEEEEEEec
Confidence 7789999999999998876 5555443 111111 11110 000000001234689999999999999999
Q ss_pred CceeeEEeeecchhhhcccEEEEeccc
Q 008038 528 NPGAWAFHCHIEPHFHIGMGVVLALGV 554 (580)
Q Consensus 528 npG~w~~HCHil~H~d~GM~~~~~~~~ 554 (580)
++|.|-|-|=|-+|-+.||-+.|.+.+
T Consensus 132 ~~g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 132 GAGKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred CCccEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999999997753
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=93.50 E-value=0.42 Score=41.09 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=28.9
Q ss_pred CCcEEEEEEEecCceeeEEeeecchhhhcccEEEEeccc
Q 008038 516 PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 554 (580)
Q Consensus 516 p~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 554 (580)
++.. +.++++.+|.|-|+|= .|...||-+.+.|+.
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 4554 4455578999999998 999999999998876
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.43 E-value=0.6 Score=41.67 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCCCeEEecCCCEEEEEEEeCCCCC-----------ceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCC
Q 008038 58 QFPGPTIRARAGDTIAVELTNKLYTE-----------GVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKA 126 (580)
Q Consensus 58 ~~pgP~l~v~~Gd~v~v~v~N~l~~~-----------~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~ 126 (580)
.+++-.+.++.|++++..+.|. ... +...-.|.... +.+++.- .....+.||++-+..|...++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~-~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~-~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNE-GELKHEFTMDAPDKNLEHVTHMILA---DDMEHDD-PNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCc-ccceEEEeccCccccchhHHHhhhC---CccccCC-cceeEeCCCCcEEEEEEecCC
Confidence 4677889999999999999997 321 11111222222 2333321 124678999999999999999
Q ss_pred cceeeecCcchhhccccEEEEEEEc
Q 008038 127 GTYFYHGHLGMQRSAGLYGSLIVDV 151 (580)
Q Consensus 127 Gt~wYH~H~~~~~~~Gl~G~liV~~ 151 (580)
|.|=+-|-..+++..||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999999999999998864
No 65
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=92.13 E-value=0.77 Score=36.87 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=44.0
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|++|.| .|.+.. .|..+.+.-.+ +.. .+. ...+.++.... ++++
T Consensus 13 i~v~~GdtVt~--~N~d~~------~Hnv~~~~g~~-------~~~-------------~~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 13 LHVKVGDTVTW--INREAM------PHNVHFVAGVL-------GEA-------------ALK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred EEECCCCEEEE--EECCCC------CccEEecCCCC-------ccc-------------ccc-ccccCCCCEEE--EECC
Confidence 88999999998 465545 78887653221 000 011 11234555544 5667
Q ss_pred CceeeEEeeecchhhhcccEEEEec
Q 008038 528 NPGAWAFHCHIEPHFHIGMGVVLAL 552 (580)
Q Consensus 528 npG~w~~HCHil~H~d~GM~~~~~~ 552 (580)
.||.|.|||=+ |- +|-+.+.|
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEE
Confidence 89999999986 55 47777654
No 66
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=91.80 E-value=1.9 Score=44.82 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=53.4
Q ss_pred CCCCCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCC--CCccccCCCCCeEEEEEEcCCCcceeeecCc
Q 008038 58 QFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTA--SISQCPINPGETYLYRFKVDKAGTYFYHGHL 135 (580)
Q Consensus 58 ~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~--~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~ 135 (580)
++--..+.++.|+ +.+.|+|. ...++..-.- +|+- + ....|.||.+.++.+++ ++|+|-|+|
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~-~~~~~Efe~~----------~~~~vv~-e~EnIaPG~s~~l~~~L-~pGtY~~~C-- 103 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNH-SQKALEWEIL----------KGVMVVE-ERENIAPGFSQKMTANL-QPGEYDMTC-- 103 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeC-CCCcceEEee----------ccccccc-cccccCCCCceEEEEec-CCceEEeec--
Confidence 4555789999996 89999999 5554332111 1110 0 12479999999888776 799999999
Q ss_pred chhhccccEEEEEEEcCC
Q 008038 136 GMQRSAGLYGSLIVDVAD 153 (580)
Q Consensus 136 ~~~~~~Gl~G~liV~~~~ 153 (580)
+.+ ..+.|.|+|....
T Consensus 104 ~~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 104 GLL--TNPKGKLIVKGEA 119 (375)
T ss_pred CcC--CCCCceEEEeCCC
Confidence 333 3358999998643
No 67
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.70 E-value=1.8 Score=41.27 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=56.2
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhh
Q 008038 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQR 139 (580)
Q Consensus 61 gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~ 139 (580)
.+.|.+..|+.|++++++. +.. ||...+. . |. +..+-||..-+..|+++++|+|...|.- -...
T Consensus 116 ~~~l~vp~g~~v~~~~ts~--DV~-----Hsf~ip~---~-~~----k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~ 180 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK--DVI-----HSFWVPE---L-GG----KIDAIPGQYNALWFNADEPGVYYGYCAELCGAG 180 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC--chh-----hcccccc---c-Cc----eEEecCCcEEEEEEEeCCCEEEEEEehhhCCcC
Confidence 3689999999999999998 322 4444321 1 11 4557789999999999999999999982 1222
Q ss_pred ccccEEEEEEEcC
Q 008038 140 SAGLYGSLIVDVA 152 (580)
Q Consensus 140 ~~Gl~G~liV~~~ 152 (580)
-+.|.+-++|.++
T Consensus 181 h~~M~~~v~v~~~ 193 (201)
T TIGR02866 181 HSLMLFKVVVVER 193 (201)
T ss_pred ccCCeEEEEEECH
Confidence 2558999998874
No 68
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=90.84 E-value=2.5 Score=36.57 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=47.0
Q ss_pred eEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 008038 233 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 312 (580)
Q Consensus 233 ~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~ 312 (580)
..+.++.|+.++|++-+... .|.|.|.+..+. +.+-||+.-.+.+++++ +|.|+++|...
T Consensus 46 ~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~--~G~y~~~C~e~ 105 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPDK--PGTYYGQCAEY 105 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEESS--SEEEEEEE-SS
T ss_pred ceecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeecc--CCcEEEcCccc
Confidence 47999999999999999553 577777765443 45678999999999987 89999999754
Q ss_pred C
Q 008038 313 G 313 (580)
Q Consensus 313 ~ 313 (580)
-
T Consensus 106 C 106 (120)
T PF00116_consen 106 C 106 (120)
T ss_dssp S
T ss_pred c
Confidence 3
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=90.70 E-value=1.6 Score=37.52 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=46.4
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|++|.|+-.+ ... .|-.. ..+.+.|+. ......+|....+.| +
T Consensus 44 ltV~~GdTVtw~~~~-d~~------~HnV~---------s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~ 91 (115)
T TIGR03102 44 IRVDPGTTVVWEWTG-EGG------GHNVV---------SDGDGDLDE--------------SERVSEEGTTYEHTF--E 91 (115)
T ss_pred EEECCCCEEEEEECC-CCC------CEEEE---------ECCCCCccc--------------cccccCCCCEEEEEe--c
Confidence 899999999996433 212 45442 222223320 112234566655555 7
Q ss_pred CceeeEEeeecchhhhcccEEEEec
Q 008038 528 NPGAWAFHCHIEPHFHIGMGVVLAL 552 (580)
Q Consensus 528 npG~w~~HCHil~H~d~GM~~~~~~ 552 (580)
.||.|-|+|= .|...||-+.+.|
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V 114 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVV 114 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEE
Confidence 8999999998 8999999999876
No 70
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=90.69 E-value=2.4 Score=39.66 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=59.8
Q ss_pred ceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCc----ccccccC-C-CCCCccceEEeCCCc
Q 008038 445 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTK----EDEKKFN-L-KNPPLKNTAVIFPYG 518 (580)
Q Consensus 445 ~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~----~~~~~~~-~-~~p~~rDTv~vpp~g 518 (580)
...+.++.|-.|.+++.|.+.+ . |.|-|+..+...... .|.+-+. . ..+.--..--+++|.
T Consensus 85 ~m~i~VPAGw~V~i~f~N~~~l------~-------Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~ 151 (196)
T PF06525_consen 85 QMTIYVPAGWNVQITFTNQESL------P-------HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQ 151 (196)
T ss_pred cEEEEEcCCCEEEEEEEcCCCC------C-------eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCc
Confidence 3458899999999999998766 4 456666543211110 1111000 0 000000011233555
Q ss_pred EEEEEEEecCceeeEEeeecchhhhcccEEEEeccc
Q 008038 519 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 554 (580)
Q Consensus 519 ~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 554 (580)
....-+..-.||.|.+=|=+.-|...||-..|.++.
T Consensus 152 s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 152 SASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred eeeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 555556556799999999999999999999998875
No 71
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=90.46 E-value=1.6 Score=37.62 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=55.6
Q ss_pred CCeEEecCC-CEEEEEEEeCCCCCceeeeeccccccCC--------------CCCCCCCC----C--ccccCCCCCeEEE
Q 008038 61 GPTIRARAG-DTIAVELTNKLYTEGVVIHWHGIRQLGT--------------PWADGTAS----I--SQCPINPGETYLY 119 (580)
Q Consensus 61 gP~l~v~~G-d~v~v~v~N~l~~~~~siH~HG~~~~~~--------------~~~DG~~~----~--~q~~i~pG~~~~y 119 (580)
-..|.|+.+ .+|.|+|+|. ...|...=-|.+-...+ ...|=+|. | ...-|.|||+.+.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~-G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHT-GKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred ccEEEEcCCCcEEEEEEecC-CcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 468999985 7899999998 54443332232111000 11122221 1 1245789999999
Q ss_pred EEEcC--CCcc-eeeecCcchhhccccEEEEE
Q 008038 120 RFKVD--KAGT-YFYHGHLGMQRSAGLYGSLI 148 (580)
Q Consensus 120 ~f~~~--~~Gt-~wYH~H~~~~~~~Gl~G~li 148 (580)
.|++. ++|+ |-|-|-...|.. .|.|.|.
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99984 6886 999999888876 4888875
No 72
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=90.26 E-value=1 Score=44.21 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=61.8
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecC-cchhh
Q 008038 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGH-LGMQR 139 (580)
Q Consensus 61 gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H-~~~~~ 139 (580)
.+.|.+..|..|++.++-. +.-+++...++.. +...-||...+..++++++|+|.-+|+ .-...
T Consensus 136 ~n~l~lPv~~~V~f~ltS~--DViHsF~IP~l~~-------------k~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~g 200 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA--DVIHSFWIPQLGG-------------KIDAIPGMTTELWLTANKPGTYRGICAEYCGPG 200 (247)
T ss_pred cceEEEeCCCeEEEEEEec--hhceeEEecCCCc-------------eeeecCCceEEEEEecCCCeEEEEEcHhhcCCC
Confidence 3899999999999999988 4555555554432 456778999999999999999999999 34444
Q ss_pred ccccEEEEEEEcCCC
Q 008038 140 SAGLYGSLIVDVADG 154 (580)
Q Consensus 140 ~~Gl~G~liV~~~~~ 154 (580)
-..|.|.++|.++++
T Consensus 201 H~~M~~~v~vvs~~~ 215 (247)
T COG1622 201 HSFMRFKVIVVSQED 215 (247)
T ss_pred cccceEEEEEEcHHH
Confidence 466999999998653
No 73
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=89.20 E-value=3 Score=38.29 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=60.1
Q ss_pred CceeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCC-CCCc---ccccccCCC--CCCccceEEeCCC
Q 008038 444 GSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEG-KFTK---EDEKKFNLK--NPPLKNTAVIFPY 517 (580)
Q Consensus 444 ~~~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g-~~~~---~~~~~~~~~--~p~~rDTv~vpp~ 517 (580)
+...+.++.|-.|.++|.|...+ +|.+ -++..+.. .+.+ .|.+..+.. .+..-..=-+..|
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e~~------pHnl-------~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYESL------PHNL-------KLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCCCC------CccE-------EEecCCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 33458899999999999998866 5544 44443211 1111 111111100 0000011112345
Q ss_pred cEEEEEEEecCceeeEEeeecchhhhcccEEEEeccc
Q 008038 518 GWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 554 (580)
Q Consensus 518 g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 554 (580)
....+.|..-.||.|.+=|-+.-|.+.||-+.+.++.
T Consensus 150 qs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 150 HSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred ceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 6666677767999999999999999999999998864
No 74
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.58 E-value=1.8 Score=34.72 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=34.8
Q ss_pred EEEEEeecCCceeEEEEEe-CeeeE--EEEECCcccC--------ceeeeeEEEcCCceEEEEEEeCCCC--CcceEEEE
Q 008038 243 YRLRIASTTALASLNLAVK-NHKMV--VVEADGNYVQ--------PFEVDDMDIYSGESYSVLLTTNQDP--SYNYWISA 309 (580)
Q Consensus 243 ~rlRliNag~~~~~~~~i~-gh~~~--via~DG~~v~--------P~~~d~v~l~pGeR~dv~v~~~~~~--~g~y~l~~ 309 (580)
+.|++.|.+.. ...|.+. |+++. |...+|..+- -+......|.|||...+-.+.+... +|.|.+.+
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 45666776643 4555553 44333 3334555551 2346789999999999999998765 79998753
No 75
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.71 E-value=3.9 Score=38.98 Aligned_cols=70 Identities=27% Similarity=0.384 Sum_probs=51.1
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.|++.+.+.+-+ |+|+|-+.+ .. ..+-||....+.|++
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~--------------Hsf~ip~~~-----------------~k---~da~PG~~~~~~~~~ 163 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVI--------------HSFWVPELG-----------------GK---IDAIPGQYNALWFNA 163 (201)
T ss_pred EEEEEcCCEEEEEEEeCchh--------------hcccccccC-----------------ce---EEecCCcEEEEEEEe
Confidence 38899999999999987654 445553321 12 235578899999999
Q ss_pred cCceeeEEeeec---chhhhcccEEEEec
Q 008038 527 DNPGAWAFHCHI---EPHFHIGMGVVLAL 552 (580)
Q Consensus 527 dnpG~w~~HCHi---l~H~d~GM~~~~~~ 552 (580)
+.||.|...|-. ..| ..|...+.+
T Consensus 164 ~~~G~y~~~c~e~cG~~h--~~M~~~v~v 190 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGH--SLMLFKVVV 190 (201)
T ss_pred CCCEEEEEEehhhCCcCc--cCCeEEEEE
Confidence 999999999998 445 556666654
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=83.77 E-value=6.6 Score=33.98 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=53.3
Q ss_pred eEEEEec-CCEEEEEEeecCCce----eEEEEEeC-eeeEEE-------EECCcccCc----eeeeeEEEcCCceEEEEE
Q 008038 233 QILHVQP-NKTYRLRIASTTALA----SLNLAVKN-HKMVVV-------EADGNYVQP----FEVDDMDIYSGESYSVLL 295 (580)
Q Consensus 233 ~~~~v~~-Ge~~rlRliNag~~~----~~~~~i~g-h~~~vi-------a~DG~~v~P----~~~d~v~l~pGeR~dv~v 295 (580)
..|+|++ ++.+.+.|-|.|... .|++-|-. ..+.-+ +.|-.|+.+ .-..+=.|.+||..+|.|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 3799998 588999999998532 35555521 122222 234455643 235677899999999999
Q ss_pred EeCCCCCc-ceEEEEeec
Q 008038 296 TTNQDPSY-NYWISAGVR 312 (580)
Q Consensus 296 ~~~~~~~g-~y~l~~~~~ 312 (580)
+.+..++| +|.+.|+..
T Consensus 96 ~~~~l~~g~~Y~f~CSFP 113 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFP 113 (125)
T ss_pred ECCCCCCCCcceEEEcCC
Confidence 98743344 699988753
No 77
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=83.70 E-value=6.1 Score=34.52 Aligned_cols=30 Identities=27% Similarity=0.698 Sum_probs=24.2
Q ss_pred EEEEecCceeeEEeeecchhhhcccEEEEecc
Q 008038 522 LRFVADNPGAWAFHCHIEPHFHIGMGVVLALG 553 (580)
Q Consensus 522 irf~adnpG~w~~HCHil~H~d~GM~~~~~~~ 553 (580)
..+.++.||.|.|.| ..|..+||-+.+.|+
T Consensus 98 ~~~Tfe~~G~Y~Y~C--~PH~~~gM~G~IvV~ 127 (128)
T COG3794 98 FTHTFETPGEYTYYC--TPHPGMGMKGKIVVG 127 (128)
T ss_pred eEEEecccceEEEEe--ccCCCCCcEEEEEeC
Confidence 344455599999999 579999999998775
No 78
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=81.17 E-value=2 Score=44.79 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=48.5
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhhc
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQRS 140 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~~ 140 (580)
-++.|++||.|.+.++|-. .... -.||.-.+ .-|+ ...+.|-++..|.|.+..+|.+||.|-- -...-
T Consensus 558 ~ef~Vkq~DEVt~l~tnld-~Ved--~thgfv~p----~~~v----~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLD-EVED--LTHGFVIP----NYGV----NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccc-eecc--ccceeeec----cCce----EEEEccCCceEEEEEccCCeeeehhhhhHHHHHH
Confidence 4677777887777777762 2222 22343321 1111 2457888999999999999999999852 22222
Q ss_pred cccEEEEEEE
Q 008038 141 AGLYGSLIVD 150 (580)
Q Consensus 141 ~Gl~G~liV~ 150 (580)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 3367777776
No 79
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=78.81 E-value=31 Score=27.96 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=43.3
Q ss_pred EEecCCEE--EEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeE-EEcCCceEEEEEEeCCCCCcceEEEEeec
Q 008038 236 HVQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDM-DIYSGESYSVLLTTNQDPSYNYWISAGVR 312 (580)
Q Consensus 236 ~v~~Ge~~--rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v-~l~pGeR~dv~v~~~~~~~g~y~l~~~~~ 312 (580)
.+.+|+.+ .+.+.|.|....-.+.+. +-.||..+ ....| .|.+|+...+.+......+|.|.+.+...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 34567765 778899987754444433 23466654 44445 78999999999988765678998887654
Q ss_pred C
Q 008038 313 G 313 (580)
Q Consensus 313 ~ 313 (580)
.
T Consensus 85 ~ 85 (101)
T PF07705_consen 85 P 85 (101)
T ss_dssp T
T ss_pred e
Confidence 3
No 80
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=76.31 E-value=14 Score=38.50 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCceEEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEE
Q 008038 230 CAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 309 (580)
Q Consensus 230 ~~~~~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~ 309 (580)
|.+..+++++|+ ++|.+.|.+... ++|+++. |+.+ ..+.=.|.||.+..+.+++ + +|+|.+.|
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~~--~~~v---v~e~EnIaPG~s~~l~~~L-~--pGtY~~~C 103 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEILK--GVMV---VEERENIAPGFSQKMTANL-Q--PGEYDMTC 103 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCc--------ceEEeec--cccc---cccccccCCCCceEEEEec-C--CceEEeec
Confidence 345579999996 999999998653 4454442 2211 0012279999888887777 3 79999999
Q ss_pred eecCCCCCCCCceEEEEecC
Q 008038 310 GVRGRKPATPPALTLLNYHP 329 (580)
Q Consensus 310 ~~~~~~~~~~~~~ail~y~~ 329 (580)
.+.. .+.+.+.+.+
T Consensus 104 ~~~~------~~~g~l~Vtg 117 (375)
T PRK10378 104 GLLT------NPKGKLIVKG 117 (375)
T ss_pred CcCC------CCCceEEEeC
Confidence 5422 1245566664
No 81
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=72.79 E-value=14 Score=36.25 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=49.5
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|+.|++.+...+-+ |.|+|-+.+ --+.+-||-.....++++
T Consensus 139 l~lPv~~~V~f~ltS~DVi--------------HsF~IP~l~--------------------~k~d~iPG~~~~~~~~~~ 184 (247)
T COG1622 139 LVLPVGRPVRFKLTSADVI--------------HSFWIPQLG--------------------GKIDAIPGMTTELWLTAN 184 (247)
T ss_pred EEEeCCCeEEEEEEechhc--------------eeEEecCCC--------------------ceeeecCCceEEEEEecC
Confidence 8899999999999987655 566665432 223445678888999999
Q ss_pred CceeeEEeeecchhhhcccE
Q 008038 528 NPGAWAFHCHIEPHFHIGMG 547 (580)
Q Consensus 528 npG~w~~HCHil~H~d~GM~ 547 (580)
.||.|-.+|+..-=....+|
T Consensus 185 ~~G~Y~g~Cae~CG~gH~~M 204 (247)
T COG1622 185 KPGTYRGICAEYCGPGHSFM 204 (247)
T ss_pred CCeEEEEEcHhhcCCCcccc
Confidence 99999999997655554433
No 82
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=67.35 E-value=1.1e+02 Score=28.81 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=53.4
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhhc
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQRS 140 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~~ 140 (580)
-.|.+..|..++++++-. +.-|+....++.. +.-.-||..-...|+++++|+|.-.|.- -...-
T Consensus 116 ~~l~lp~g~~v~~~ltS~--DViHsf~vp~l~~-------------k~d~~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H 180 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS--DVIHSFSVPDLNL-------------KMDAIPGRINHLFFCPDRHGVFVGYCSELCGVGH 180 (194)
T ss_pred ceEEEeCCCEEEeeeecC--ccccceeccccCc-------------eeecCCCceEEEEEEcCCCEEEEEEeehhhCcCc
Confidence 358889999999999887 4444444443322 2344589999999999999999999982 22222
Q ss_pred cccEEEEEEEcCC
Q 008038 141 AGLYGSLIVDVAD 153 (580)
Q Consensus 141 ~Gl~G~liV~~~~ 153 (580)
..|.+.+.|.+++
T Consensus 181 ~~M~~~v~v~~~~ 193 (194)
T MTH00047 181 SYMPIVIEVVDVD 193 (194)
T ss_pred ccCcEEEEEEcCC
Confidence 4477788887654
No 83
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=63.78 E-value=40 Score=27.19 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=41.2
Q ss_pred CCeEEec---CCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeee
Q 008038 61 GPTIRAR---AGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYH 132 (580)
Q Consensus 61 gP~l~v~---~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH 132 (580)
.|.++++ ....|.|+|.|. ...+..+....... ..+.+ .+..|+||++.+..|.. ...--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~-g~~~~~~~v~~~~y-----~~~~~--~~~~v~ag~~~~~~w~l-~~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNP-GSAAVTFTVYDNAY-----GGGGP--WTYTVAAGQTVSLTWPL-AASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeC-CCCcEEEEEEeCCc-----CCCCC--EEEEECCCCEEEEEEee-cCCCCcEE
Confidence 3555554 234899999999 77777777766322 11212 36789999999999988 23334554
No 84
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=62.78 E-value=15 Score=35.73 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=50.8
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|+.|++.+...+-+ |+|+|-+.+ ..+|.+ ||....+.|+++
T Consensus 141 l~lP~g~pV~~~ltS~DVi--------------HSF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 141 IAFPVNTPINFKITSNSVM--------------NSFFIPQLG-----------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred EEEECCCEEEEEEEECchh--------------hhhhhhhcC-----------------CeeecC---CCceEEEEEEeC
Confidence 7899999999999987755 567775542 335655 688889999999
Q ss_pred CceeeEEeeecchhhh-cccEEEEe
Q 008038 528 NPGAWAFHCHIEPHFH-IGMGVVLA 551 (580)
Q Consensus 528 npG~w~~HCHil~H~d-~GM~~~~~ 551 (580)
.||.|.-.|--.-=.. .-|...+.
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~ 211 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAI 211 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEE
Confidence 9999999997543332 33544443
No 85
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=61.13 E-value=27 Score=27.96 Aligned_cols=58 Identities=21% Similarity=0.411 Sum_probs=32.3
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCC---CccccCCCCCeEEEEEEc--CC--Ccceee
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTAS---ISQCPINPGETYLYRFKV--DK--AGTYFY 131 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~---~~q~~i~pG~~~~y~f~~--~~--~Gt~wY 131 (580)
=+|+..-|.+..+.|.|. .++ .+- -|++|-.. +....|.||++.+|++.. .. +|+|..
T Consensus 16 v~l~f~sgq~~D~~v~d~-~g~---------~vw--rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDK-EGK---------EVW--RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEESSS--EEEEEE-T-T-----------EEE--ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEeCCCCEEEEEEECC-CCC---------EEE--EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 457777777777777766 221 111 47788663 346789999999999988 33 688753
No 86
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.55 E-value=1.5e+02 Score=28.79 Aligned_cols=77 Identities=8% Similarity=-0.055 Sum_probs=52.3
Q ss_pred CCeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhh
Q 008038 61 GPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQR 139 (580)
Q Consensus 61 gP~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~ 139 (580)
...|.+..|..|++.+++. +.-|+...-++.. +.-.-||..-...|+++++|+|+-.|.- -...
T Consensus 139 ~n~l~lP~~~~v~~~~ts~--DViHsf~ip~~~~-------------k~d~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~~ 203 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA--DVIHSWTVPSLGV-------------KVDAIPGRLNQLSFEPKRPGVFYGQCSEICGAN 203 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC--ccccceeccccCc-------------eeECCCCcceeEEEEeCCCEEEEEECccccCcC
Confidence 3689999999999999998 3333333322211 3345689988889999999999999972 1122
Q ss_pred ccccEEEEEEEcC
Q 008038 140 SAGLYGSLIVDVA 152 (580)
Q Consensus 140 ~~Gl~G~liV~~~ 152 (580)
-+.|.+.++|.++
T Consensus 204 H~~M~~~v~v~~~ 216 (228)
T MTH00140 204 HSFMPIVVEAVPL 216 (228)
T ss_pred cCCCeEEEEEECH
Confidence 2346777777654
No 87
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=56.96 E-value=27 Score=28.64 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=40.3
Q ss_pred EecCCEEEEEEe--ecCCceeEEEEEeCe--eeEEEEECCcccCceeeeeE-EEcCCceEEEEEEeCCCC-CcceEEEEe
Q 008038 237 VQPNKTYRLRIA--STTALASLNLAVKNH--KMVVVEADGNYVQPFEVDDM-DIYSGESYSVLLTTNQDP-SYNYWISAG 310 (580)
Q Consensus 237 v~~Ge~~rlRli--Nag~~~~~~~~i~gh--~~~via~DG~~v~P~~~d~v-~l~pGeR~dv~v~~~~~~-~g~y~l~~~ 310 (580)
-+|||+|.||++ +... . .-...+. .++|..-+|..+. ...+ .......++..++++++. .|.|.|.+.
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 468999999999 6652 1 0111222 3555555555331 1222 346788889989887653 599999887
Q ss_pred ec
Q 008038 311 VR 312 (580)
Q Consensus 311 ~~ 312 (580)
..
T Consensus 85 ~~ 86 (99)
T PF01835_consen 85 TD 86 (99)
T ss_dssp ET
T ss_pred Ec
Confidence 63
No 88
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=54.83 E-value=25 Score=33.92 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=46.1
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|+.|++.+...+-+ |+|+|-+.+ ..+|.+ ||-...+.|+++
T Consensus 132 l~iP~g~~v~~~ltS~DVi--------------Hsf~vP~l~-----------------~k~dai---PG~~~~~~~~~~ 177 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSADTM--------------TSFWIPQLG-----------------GQKYAM---TGMTMNWYLQAD 177 (217)
T ss_pred EEEECCCEEEEEEECCchh--------------hhhhchhhC-----------------ceeecC---CCceEEEEEEeC
Confidence 7899999999999987755 667775432 345665 688889999999
Q ss_pred CceeeEEeeecc
Q 008038 528 NPGAWAFHCHIE 539 (580)
Q Consensus 528 npG~w~~HCHil 539 (580)
.||.|--.|=-.
T Consensus 178 ~~G~y~g~Cae~ 189 (217)
T TIGR01432 178 QVGTYRGRNANF 189 (217)
T ss_pred CCEEEEEEehhh
Confidence 999999999744
No 89
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=54.20 E-value=83 Score=25.78 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=37.9
Q ss_pred EEecCCEE--EEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeC-CCCCcceE
Q 008038 236 HVQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN-QDPSYNYW 306 (580)
Q Consensus 236 ~v~~Ge~~--rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~-~~~~g~y~ 306 (580)
.+..|+++ .+.|.|.|.. ...|++.-.+ .....+. ..-..-.|+||+..++.|.+. ..+.|.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~-----~~~~~~~-v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSI-PARFRVRQPE-----SLSSFFS-VEPPSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCC-CEEEEEEeCC-----cCCCCEE-EECCCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 35567776 8999999865 4555553211 0011110 011234599999999999998 54566664
No 90
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=53.91 E-value=80 Score=23.95 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=36.0
Q ss_pred EEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 008038 234 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 310 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~ 310 (580)
.+++++|+++++.+-+.+. +..+.|...+|..+....... -..+..-.+.++..+ +|+|+|+..
T Consensus 6 ~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~--~GtYyi~V~ 69 (70)
T PF04151_consen 6 SFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA--AGTYYIRVY 69 (70)
T ss_dssp EEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS--SEEEEEEEE
T ss_pred EEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC--CEEEEEEEE
Confidence 6899999999999877664 233556666654332111111 011222233344444 889988764
No 91
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=53.47 E-value=83 Score=24.52 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=31.1
Q ss_pred ecCCEE--EEEEeecCCce--eEEEEEeCeeeEEEEECCccc--CceeeeeEEEcCCceEEEEEEeC--CC-CCcceEEE
Q 008038 238 QPNKTY--RLRIASTTALA--SLNLAVKNHKMVVVEADGNYV--QPFEVDDMDIYSGESYSVLLTTN--QD-PSYNYWIS 308 (580)
Q Consensus 238 ~~Ge~~--rlRliNag~~~--~~~~~i~gh~~~via~DG~~v--~P~~~d~v~l~pGeR~dv~v~~~--~~-~~g~y~l~ 308 (580)
.+|+.+ .+.+-|.|... ...+++. .=+|=.+ .|..+. .|.||+...+.++.. .+ .+|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 456664 77888988543 2344443 2223221 233333 799998777666653 32 45889887
Q ss_pred Eee
Q 008038 309 AGV 311 (580)
Q Consensus 309 ~~~ 311 (580)
...
T Consensus 73 ~~a 75 (78)
T PF10633_consen 73 VTA 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 92
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=53.30 E-value=16 Score=31.15 Aligned_cols=53 Identities=25% Similarity=0.279 Sum_probs=31.7
Q ss_pred EEEEeCCCCCc---eeeeeccccccC---CCCCCCCCCCccccCCCCCeEEEEEEc---CCCcc
Q 008038 74 VELTNKLYTEG---VVIHWHGIRQLG---TPWADGTASISQCPINPGETYLYRFKV---DKAGT 128 (580)
Q Consensus 74 v~v~N~l~~~~---~siH~HG~~~~~---~~~~DG~~~~~q~~i~pG~~~~y~f~~---~~~Gt 128 (580)
|++.|. ...+ .+=|||=-...+ ...-+||-|. |--|+||++|+|.=-. .+.|+
T Consensus 34 itI~N~-g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGe-QP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 34 VTIRNL-GEVPVQLLSRYWLITDGNGRVTEVEGEGVVGE-QPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEecC-CCccceeeeeEEEEecCCCcEEEEEcCceecc-ccccCCCCceEEcCCcCccCCcce
Confidence 677777 5544 466888332211 1223555553 7889999999987422 45565
No 93
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=53.30 E-value=1.4e+02 Score=25.34 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=11.8
Q ss_pred eeeeeEEEcCCceEEEEEEeCC
Q 008038 278 FEVDDMDIYSGESYSVLLTTNQ 299 (580)
Q Consensus 278 ~~~d~v~l~pGeR~dv~v~~~~ 299 (580)
.....+.|.+|..|++.+.-..
T Consensus 62 l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 62 LLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred EEeccEEEcCCCEEEEEEECCC
Confidence 3444555666666665555443
No 94
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.97 E-value=1e+02 Score=29.06 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred EEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecC
Q 008038 234 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRG 313 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~ 313 (580)
.+.++.|+.+||++--... .|.|.+.+... .+..-||..-.+.+++++ +|.|...|....
T Consensus 117 ~l~lp~g~~v~~~ltS~DV--iHsf~vp~l~~----------------k~d~~PG~~~~~~~~~~~--~G~y~g~C~e~C 176 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSDV--IHSFSVPDLNL----------------KMDAIPGRINHLFFCPDR--HGVFVGYCSELC 176 (194)
T ss_pred eEEEeCCCEEEeeeecCcc--ccceeccccCc----------------eeecCCCceEEEEEEcCC--CEEEEEEeehhh
Confidence 5889999999999876543 45666654333 234558988888888876 899999997543
No 95
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=49.05 E-value=44 Score=25.24 Aligned_cols=47 Identities=26% Similarity=0.473 Sum_probs=30.6
Q ss_pred EEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEE
Q 008038 235 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSV 293 (580)
Q Consensus 235 ~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv 293 (580)
+++.+|+.++||...+. .+.+.+..++|.. +|. .+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEEe
Confidence 56678998998865533 3777777888854 542 33456666666554
No 96
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=48.68 E-value=98 Score=25.98 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=44.4
Q ss_pred EEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCcchhhccccEEEEEEEcC
Q 008038 73 AVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVA 152 (580)
Q Consensus 73 ~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 152 (580)
.|+++|+| .....|..|=-.- ..| +....+.||+++..+|...-.|+--|.|+.... ...-..-+.|...
T Consensus 2 ~V~I~N~L-~~~~~L~vhC~S~----d~D----lg~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~~-~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNL-GPGKILTVHCKSK----DDD----LGWHVLKPGQSYSFSFRDNFFGTTLFWCHFRWP-GGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECC-CCCCeEEEEeeCC----Ccc----CCCEECCCCCEEEEEEecCcCCceeEEEEEEEC-CccEEEEEEEEec
Confidence 48899995 4444455554321 112 113468999999999988766888899997761 1113556666543
No 97
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=48.50 E-value=22 Score=27.87 Aligned_cols=60 Identities=27% Similarity=0.406 Sum_probs=25.1
Q ss_pred cCCC--EEEEEEEeCCCCCc-eeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEc-----CCCcce
Q 008038 67 RAGD--TIAVELTNKLYTEG-VVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-----DKAGTY 129 (580)
Q Consensus 67 ~~Gd--~v~v~v~N~l~~~~-~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~-----~~~Gt~ 129 (580)
.+|+ .+.++|+|. ...+ ..+.+.-- .+..|........-..|+||++.+..|.+ -.+|+|
T Consensus 2 ~~G~~~~~~~tv~N~-g~~~~~~v~~~l~--~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 2 TPGETVTVTLTVTNT-GTAPLTNVSLSLS--LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp -TTEEEEEEEEEE---SSS-BSS-EEEEE----TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CCCCEEEEEEEEEEC-CCCceeeEEEEEe--CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 4555 456778888 4332 12222111 11245521111122379999999888887 235665
No 98
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=47.42 E-value=1.1e+02 Score=28.03 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=47.7
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.+++.+.-.+-+ | +|+|-+.+ ...|.+ ||....+.|.+
T Consensus 74 ~LvLP~g~~Vr~~lTS~DVI-------H-------SF~VP~lg-----------------vK~Dav---PGr~n~l~~~~ 119 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDVI-------H-------SWSVPSLG-----------------IKADAI---PGRLHKINTFI 119 (162)
T ss_pred CEEEeCCCEEEEEEEeCccc-------e-------eeeccccC-----------------ceeecc---CCceEEEEEec
Confidence 37889999999998876654 4 44444331 223433 67777889999
Q ss_pred cCceeeEEeeecchhhhcc-cEEEEe
Q 008038 527 DNPGAWAFHCHIEPHFHIG-MGVVLA 551 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~G-M~~~~~ 551 (580)
+.||.|...|.-+-=.... |-..+.
T Consensus 120 ~~~G~y~gqCsElCG~gHs~M~~~V~ 145 (162)
T PTZ00047 120 LREGVFYGQCSEMCGTLHGFMPIVVE 145 (162)
T ss_pred CCCeEEEEEcchhcCcCccCceEEEE
Confidence 9999999999865433323 444443
No 99
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=44.97 E-value=60 Score=31.51 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=42.5
Q ss_pred EEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecC
Q 008038 234 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRG 313 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~ 313 (580)
.+.+..|+.+||++--... .|+|.+. ...-....-||..-.+-+++++ +|.|...|....
T Consensus 140 el~lP~g~pV~~~ltS~DV--iHSF~VP----------------~l~~K~DaiPG~~n~~~~~~~~--~G~y~g~CaE~C 199 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSV--MNSFFIP----------------QLGSQIYAMAGMQTKLHLIANE--PGVYDGISANYS 199 (226)
T ss_pred eEEEECCCEEEEEEEECch--hhhhhhh----------------hcCCeeecCCCceEEEEEEeCC--CEEEEEEchhhc
Confidence 6889999999998877553 3444443 2333344558888888888877 899999886543
No 100
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.30 E-value=71 Score=30.99 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=49.1
Q ss_pred eeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 008038 446 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 525 (580)
Q Consensus 446 ~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 525 (580)
+.+.++.|+.+++.+.-.+-. |+|+|-+.+ ..+|.+ ||....+.|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DVi--------------Hsf~vP~l~-----------------~K~Dai---PG~~n~~~~~ 185 (226)
T MTH00139 140 NRLVLPYKSNIRALITAADVL--------------HSWTVPSLG-----------------VKIDAV---PGRLNQVGFF 185 (226)
T ss_pred ceEEEecCCEEEEEEecCccc--------------cceeccccC-----------------ccccCC---CCcEEEEEEE
Confidence 348899999999999877654 566665442 345665 5888889999
Q ss_pred ecCceeeEEeeecchhhhccc
Q 008038 526 ADNPGAWAFHCHIEPHFHIGM 546 (580)
Q Consensus 526 adnpG~w~~HCHil~H~d~GM 546 (580)
++.||.+.--|--+-=.....
T Consensus 186 ~~~~G~y~g~CsE~CG~~Hs~ 206 (226)
T MTH00139 186 INRPGVFYGQCSEICGANHSF 206 (226)
T ss_pred cCCCEEEEEEChhhcCcCcCC
Confidence 999999999998655443333
No 101
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.60 E-value=1.1e+02 Score=29.64 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=50.2
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.|++.+.+.+-. | +|+|-+.+ .. +.+-||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~ts~DVi-------H-------sf~ip~~~-----------------~k---~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 141 RLVLPYSVDTRVLVTSADVI-------H-------SWTVPSLG-----------------VK---VDAIPGRLNQLSFEP 186 (228)
T ss_pred eEEEeeCcEEEEEEEcCccc-------c-------ceeccccC-----------------ce---eECCCCcceeEEEEe
Confidence 48899999999999987654 4 45554321 11 233468888899999
Q ss_pred cCceeeEEeeecchhhhcc-cEEEEe
Q 008038 527 DNPGAWAFHCHIEPHFHIG-MGVVLA 551 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~G-M~~~~~ 551 (580)
+.||.+...|.-+-..... |-..+.
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~ 212 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVE 212 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEE
Confidence 9999999999977665433 444443
No 102
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=38.86 E-value=2.1e+02 Score=24.87 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=42.2
Q ss_pred EEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCccc-------CceeeeeEEEcCCceEEEEEEeCC
Q 008038 234 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-------QPFEVDDMDIYSGESYSVLLTTNQ 299 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v-------~P~~~d~v~l~pGeR~dv~v~~~~ 299 (580)
.|++..-..|+|++-.-+ ...+.|+|..+ ++.++..- .+....++.|..|++|+|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 466766667999998444 46788888765 55555432 355677899999999999998765
No 103
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.55 E-value=80 Score=27.60 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=35.5
Q ss_pred EEEEEEeecCCceeEEEEEeCeeeEEEEECCccc----CceeeeeEEEcCCceEEEEE
Q 008038 242 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYV----QPFEVDDMDIYSGESYSVLL 295 (580)
Q Consensus 242 ~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v----~P~~~d~v~l~pGeR~dv~v 295 (580)
.|++||.|.+.. .+.|-...+.+...||... ...-...=.|.|||.+...=
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYTS 86 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEeC
Confidence 479999998744 5777778888887777632 12334566789998776543
No 104
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=37.53 E-value=1.2e+02 Score=29.79 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=48.7
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.|++.+.-.+-. |+|+|-+.+ ..+|.+ ||....+.|.+
T Consensus 152 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~iP~lg-----------------vK~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 152 RLVVPINTHVRILVTGADVL--------------HSFAVPSLG-----------------LKIDAV---PGRLNQTGFFI 197 (240)
T ss_pred eEEEecCCEEEEEEEcCCcc--------------cceeecccC-----------------ceeecC---CCcceeEEEEc
Confidence 48899999999999877654 445554432 234544 57777889999
Q ss_pred cCceeeEEeeecchhhhcccEE
Q 008038 527 DNPGAWAFHCHIEPHFHIGMGV 548 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~GM~~ 548 (580)
+.||.+.-.|.-.--.....|.
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~ 219 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMP 219 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCe
Confidence 9999999999877665444333
No 105
>COG1470 Predicted membrane protein [Function unknown]
Probab=37.45 E-value=3.5e+02 Score=29.15 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=47.8
Q ss_pred ceEEEEecCCE--EEEEEeecCCc--eeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEE--EEeCCC-CCcc
Q 008038 232 PQILHVQPNKT--YRLRIASTTAL--ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVL--LTTNQD-PSYN 304 (580)
Q Consensus 232 ~~~~~v~~Ge~--~rlRliNag~~--~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~--v~~~~~-~~g~ 304 (580)
+..+++++|+. ++++|-|.|.. ..+.+.+++-.=+-+.+|+..+ + .|.||+|-.|- ++++.+ .+|.
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCc
Confidence 34677888876 48888898854 3356666654445556676533 2 36677665554 445443 4588
Q ss_pred eEEEEeecCC
Q 008038 305 YWISAGVRGR 314 (580)
Q Consensus 305 y~l~~~~~~~ 314 (580)
|.+......+
T Consensus 461 Y~i~i~~ksD 470 (513)
T COG1470 461 YRITITAKSD 470 (513)
T ss_pred EEEEEEEeec
Confidence 9888776554
No 106
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=37.37 E-value=1.6e+02 Score=26.80 Aligned_cols=74 Identities=7% Similarity=-0.091 Sum_probs=45.2
Q ss_pred eEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhhcc
Q 008038 63 TIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQRSA 141 (580)
Q Consensus 63 ~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~~~ 141 (580)
.|.+..|..|++.++-. +.-|+....++.. +.-.-||..-...|.+.++|+|+-.|.- -...-.
T Consensus 74 ~LvLP~g~~Vr~~lTS~--DVIHSF~VP~lgv-------------K~DavPGr~n~l~~~~~~~G~y~gqCsElCG~gHs 138 (162)
T PTZ00047 74 RLTLPTRTHIRFLITAT--DVIHSWSVPSLGI-------------KADAIPGRLHKINTFILREGVFYGQCSEMCGTLHG 138 (162)
T ss_pred CEEEeCCCEEEEEEEeC--ccceeeeccccCc-------------eeeccCCceEEEEEecCCCeEEEEEcchhcCcCcc
Confidence 46667777777776665 3333333333221 2344578877888888999999999982 111113
Q ss_pred ccEEEEEEEc
Q 008038 142 GLYGSLIVDV 151 (580)
Q Consensus 142 Gl~G~liV~~ 151 (580)
.|.+.+.|.+
T Consensus 139 ~M~~~V~vvs 148 (162)
T PTZ00047 139 FMPIVVEAVS 148 (162)
T ss_pred CceEEEEEeC
Confidence 3677777665
No 107
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.78 E-value=1.2e+02 Score=29.52 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=49.7
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.+++.+.-.+-. |+|+|-+.+ ...|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~iP~lg-----------------~k~dai---PG~~~~~~~~~ 186 (229)
T MTH00038 141 RLVLPYQTPIRVLVSSADVL--------------HSWAVPSLG-----------------VKMDAV---PGRLNQTTFFI 186 (229)
T ss_pred eEEEecCeEEEEEEEECCcc--------------ccccccccC-----------------ceeecC---CCceEEEEEEc
Confidence 48899999999999877654 445554332 234544 68888899999
Q ss_pred cCceeeEEeeecchhhhcccEEE
Q 008038 527 DNPGAWAFHCHIEPHFHIGMGVV 549 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~GM~~~ 549 (580)
+.||.+..-|--+--.....|-.
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~ 209 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFMPI 209 (229)
T ss_pred CCCEEEEEEcccccCcCcCCCeE
Confidence 99999999998776665554433
No 108
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.52 E-value=1e+02 Score=30.00 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=46.9
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
-+.++.|+.+++.+.-.+-. |+|+|-+.+ ...|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~ip~~~-----------------~k~da~---PG~~~~~~~~~ 186 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDVL--------------HSWAVPALG-----------------VKMDAV---PGRLNQTAFIA 186 (230)
T ss_pred eEEEecCcEEEEEEEeCccc--------------cceeccccC-----------------CccccC---CCceEEEEEEe
Confidence 48889999999999876654 667776542 223443 68888899999
Q ss_pred cCceeeEEeeecchhh
Q 008038 527 DNPGAWAFHCHIEPHF 542 (580)
Q Consensus 527 dnpG~w~~HCHil~H~ 542 (580)
+.||.+...|.-+--.
T Consensus 187 ~~~G~~~g~C~e~CG~ 202 (230)
T MTH00129 187 SRPGVFYGQCSEICGA 202 (230)
T ss_pred CCceEEEEEChhhccc
Confidence 9999999999875433
No 109
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=36.38 E-value=76 Score=25.88 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=29.6
Q ss_pred EEEEEEeecCCceeEEEEEeCeeeEEEEECCccc--C--ceeeeeEEEcCCceEEEEE
Q 008038 242 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYV--Q--PFEVDDMDIYSGESYSVLL 295 (580)
Q Consensus 242 ~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v--~--P~~~d~v~l~pGeR~dv~v 295 (580)
.|++||-|.+.. .+.|-.-.+.+...||... + -.-...=.|.|||.+...=
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~S 69 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYTS 69 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEcC
Confidence 478999998866 4677677777777776422 1 1223456799999776543
No 110
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.43 E-value=1.3e+02 Score=29.13 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=50.4
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.+++.+.-.+-. |.|+|-+.+ ...|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~ip~lg-----------------~k~dai---PG~~~~~~~~~ 186 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDVL--------------HSWAVPSLG-----------------LKTDAI---PGRLNQTTLMS 186 (227)
T ss_pred eEEecCCCEEEEEEEECccc--------------ccccccccc-----------------cceecC---CCceEEEEEec
Confidence 48899999999999877654 556664432 223443 68888899999
Q ss_pred cCceeeEEeeecchhhhcc-cEEEEe
Q 008038 527 DNPGAWAFHCHIEPHFHIG-MGVVLA 551 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~G-M~~~~~ 551 (580)
+.||.+..-|.-+-..... |-..++
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v~ 212 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVLE 212 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEEE
Confidence 9999999999976655444 444443
No 111
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=32.64 E-value=38 Score=28.13 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCCeEEecCCCEEEEEEEeC
Q 008038 51 IVMGINGQFPGPTIRARAGDTIAVELTNK 79 (580)
Q Consensus 51 ~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~ 79 (580)
.-..|||+.-=|-=.|+.||.|.|++.|.
T Consensus 34 GrV~vNG~~aKpS~~VK~GD~l~i~~~~~ 62 (100)
T COG1188 34 GRVKVNGQRAKPSKEVKVGDILTIRFGNK 62 (100)
T ss_pred CeEEECCEEcccccccCCCCEEEEEeCCc
Confidence 34678998777999999999999999999
No 112
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.32 E-value=1.6e+02 Score=28.57 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=48.9
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
-+.++.|+.+++.+.-.+-. |+|+|-+.+ ...|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~iP~lg-----------------~k~dai---PG~~~~~~~~~ 186 (230)
T MTH00185 141 RMVVPMESPIRVLITAEDVL--------------HSWTVPALG-----------------VKMDAV---PGRLNQATFII 186 (230)
T ss_pred eEEEecCCEEEEEEEcCccc--------------ccccccccC-----------------ceeEec---CCceEEEEEEe
Confidence 48899999999999877654 556665432 223433 68888889999
Q ss_pred cCceeeEEeeecchhhhcccEE
Q 008038 527 DNPGAWAFHCHIEPHFHIGMGV 548 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~GM~~ 548 (580)
+.||.+.--|.-+-......|.
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~ 208 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFMP 208 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCCe
Confidence 9999999999986655444333
No 113
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.32 E-value=1.3e+02 Score=29.31 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=49.0
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
-+.++.|+.+++.+.-.+-. |+|+|-+.+ ..+|.+ ||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi--------------Hsf~vp~l~-----------------~k~dav---PG~~~~~~~~~ 186 (227)
T MTH00154 141 RLVLPMNTQIRILITAADVI--------------HSWTVPSLG-----------------VKVDAV---PGRLNQLNFLI 186 (227)
T ss_pred eEEEecCCEEEEEEEcCchh--------------hheeccccC-----------------CeeecC---CCceEEEEEEE
Confidence 47899999999998876654 455554432 234544 68888899999
Q ss_pred cCceeeEEeeecchhhhcc-cEEEE
Q 008038 527 DNPGAWAFHCHIEPHFHIG-MGVVL 550 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~G-M~~~~ 550 (580)
+.||.+.--|--+-=...+ |-..+
T Consensus 187 ~~~G~y~g~Cse~CG~~H~~M~~~v 211 (227)
T MTH00154 187 NRPGLFFGQCSEICGANHSFMPIVI 211 (227)
T ss_pred cCceEEEEEeechhCcCccCCeEEE
Confidence 9999999999865444333 33343
No 114
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=32.32 E-value=1.5e+02 Score=28.71 Aligned_cols=75 Identities=11% Similarity=-0.024 Sum_probs=48.3
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhhc
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQRS 140 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~~ 140 (580)
..|.+..|..|++.+++. +.-|+....++.. +...-||..-...|.+.++|+|+--|.- -...-
T Consensus 140 n~lvlP~~~~v~~~~tS~--DViHsf~vP~~~~-------------k~daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~H 204 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAA--DVIHSWTVPSLGV-------------KVDAVPGRLNQIGFTITRPGVFYGQCSEICGANH 204 (228)
T ss_pred ceEEEecCCEEEEEEEeC--CccccccccccCc-------------ceecCCCceEEEEEEeCCCEEEEEEChhhcCcCc
Confidence 467888899999999998 3333333322221 2344578888889999999999988871 11111
Q ss_pred cccEEEEEEEc
Q 008038 141 AGLYGSLIVDV 151 (580)
Q Consensus 141 ~Gl~G~liV~~ 151 (580)
+-|...+.|.+
T Consensus 205 s~M~~~v~vv~ 215 (228)
T MTH00008 205 SFMPIVLEAVD 215 (228)
T ss_pred cCceeEEEEEC
Confidence 33666666654
No 115
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=31.50 E-value=1e+02 Score=31.57 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=49.6
Q ss_pred EEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEec
Q 008038 448 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 527 (580)
Q Consensus 448 ~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 527 (580)
+.++.|+.|++.+...+-+ |+|+|-..+ ...|.+ ||-...+.|.++
T Consensus 153 L~iP~g~pV~f~lTS~DVi--------------HSF~IP~Lg-----------------~K~dam---PG~~n~l~~~a~ 198 (315)
T PRK10525 153 IAFPANVPVYFKVTSNSVM--------------NSFFIPRLG-----------------SQIYAM---AGMQTRLHLIAN 198 (315)
T ss_pred EEEecCCEEEEEEEEchhh--------------hhhhhhhhC-----------------CeeecC---CCceeEEEEEcC
Confidence 7889999999999987765 667775542 223443 688889999999
Q ss_pred CceeeEEeeecchhhh-cccEEEE
Q 008038 528 NPGAWAFHCHIEPHFH-IGMGVVL 550 (580)
Q Consensus 528 npG~w~~HCHil~H~d-~GM~~~~ 550 (580)
.||.|.-.|-..-=.. ..|...+
T Consensus 199 ~~G~Y~G~CaEyCG~gHs~M~f~v 222 (315)
T PRK10525 199 EPGTYDGISASYSGPGFSGMKFKA 222 (315)
T ss_pred CCEEEEEEChhhcCccccCCeEEE
Confidence 9999999997543332 2344444
No 116
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=31.24 E-value=55 Score=29.32 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=20.7
Q ss_pred eCCCcEEEEEEEe-cCc---eeeEEeeecc
Q 008038 514 IFPYGWTALRFVA-DNP---GAWAFHCHIE 539 (580)
Q Consensus 514 vpp~g~v~irf~a-dnp---G~w~~HCHil 539 (580)
|+||..+.|.++. .|| |.|+|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 5789999999965 466 9999999643
No 117
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=29.65 E-value=1.1e+02 Score=32.64 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=54.8
Q ss_pred CCCceeEEEEEcCC-CCC-CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEE
Q 008038 45 PDCKESIVMGINGQ-FPG-PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFK 122 (580)
Q Consensus 45 ~~g~~~~~~~~NG~-~pg-P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~ 122 (580)
.|+....++.=+|. .-+ =+..+++|+.+++.|+|. ...++-.||+... .|+.- --+.|.-....+|.
T Consensus 529 ~Dlmk~n~vvr~g~kv~v~~~staps~~l~ef~Vkq~---DEVt~l~tnld~V----ed~th----gfv~p~~~v~~~v~ 597 (637)
T COG4263 529 RDLMKVNVVVRSGNKVRVYMTSTAPSFGLTEFKVKQG---DEVTVLTTNLDEV----EDLTH----GFVIPNYGVNMEVK 597 (637)
T ss_pred hccccceeEEecCCceEEEEeeccCCCceEEEEEecC---cEEEEEeccccee----ccccc----eeeeccCceEEEEc
Confidence 44444444444442 001 245688999999999998 2467778888652 46654 34667778888999
Q ss_pred cCCCcceeeecC
Q 008038 123 VDKAGTYFYHGH 134 (580)
Q Consensus 123 ~~~~Gt~wYH~H 134 (580)
+++.|++||.|-
T Consensus 598 pq~tasvtf~a~ 609 (637)
T COG4263 598 PQRTASVTFYAD 609 (637)
T ss_pred cCCceEEEEEcc
Confidence 999999999986
No 118
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.87 E-value=1.3e+02 Score=29.12 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=46.4
Q ss_pred eeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 008038 446 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 525 (580)
Q Consensus 446 ~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 525 (580)
+.+.++.|+.+++.+...+-. |+|.|-+.+ ...|.+ ||....+.|.
T Consensus 140 n~l~lP~~~~v~~~~tS~DVi--------------Hsf~vP~lg-----------------~k~dai---PG~~n~~~~~ 185 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSADVL--------------HSWTLPSLG-----------------LKMDAV---PGRLNQLAFL 185 (225)
T ss_pred ceEEEecCCEEEEEEEeCChh--------------hcccccccc-----------------ccccCC---CCeEEEEEEE
Confidence 348899999999999987654 455554432 234544 6888889999
Q ss_pred ecCceeeEEeeecchhh
Q 008038 526 ADNPGAWAFHCHIEPHF 542 (580)
Q Consensus 526 adnpG~w~~HCHil~H~ 542 (580)
++.||.+.--|.-+-=.
T Consensus 186 ~~~~G~~~g~CsE~CG~ 202 (225)
T MTH00168 186 SSRPGSFYGQCSEICGA 202 (225)
T ss_pred cCCCEEEEEEcccccCc
Confidence 99999999999865433
No 119
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=28.23 E-value=87 Score=22.16 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=29.6
Q ss_pred CCccce-EEeCCCcEEEEEEEecCceeeEEeeecchhhhc
Q 008038 506 PPLKNT-AVIFPYGWTALRFVADNPGAWAFHCHIEPHFHI 544 (580)
Q Consensus 506 p~~rDT-v~vpp~g~v~irf~adnpG~w~~HCHil~H~d~ 544 (580)
|..+-+ +..+.|....++++-.....+=+||..+.|.+.
T Consensus 6 PL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 6 PLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred cccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 444443 334568888889988889999999999999763
No 120
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=28.16 E-value=2e+02 Score=24.36 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=26.2
Q ss_pred EEEEEEeecCCce-eEEEEEeCe-eeEEEEECCcccCceeeeeEEEcCCceEEEEEEeC
Q 008038 242 TYRLRIASTTALA-SLNLAVKNH-KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN 298 (580)
Q Consensus 242 ~~rlRliNag~~~-~~~~~i~gh-~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~ 298 (580)
.|+++|+|-+... .+.+.+.|. .+++. .....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEE
Confidence 4899999998663 355666653 22221 133578899999888666554
No 121
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.74 E-value=2.1e+02 Score=27.77 Aligned_cols=68 Identities=12% Similarity=0.256 Sum_probs=49.4
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.+++.+.-.+-. |+|+|-+.+ ...|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~vP~lg-----------------~K~Dav---PG~~n~~~~~~ 186 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL--------------HSWAVPSLG-----------------VKTDAV---PGRLNQTSFIT 186 (227)
T ss_pred eEEEecCceEEEEEEecchh--------------hcccccccC-----------------ceeEec---CCceEEEEEEE
Confidence 48899999999999877654 566665432 233443 68888899999
Q ss_pred cCceeeEEeeecchhhhcccEE
Q 008038 527 DNPGAWAFHCHIEPHFHIGMGV 548 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~GM~~ 548 (580)
+.||.+.--|--+=-.....|.
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~ 208 (227)
T MTH00117 187 TRPGVFYGQCSEICGANHSFMP 208 (227)
T ss_pred cccceEEEEeccccccCccCCe
Confidence 9999999999876555444443
No 122
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=27.51 E-value=76 Score=27.74 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=12.5
Q ss_pred CCCCCCccccCCCCCeEEEE
Q 008038 101 DGTASISQCPINPGETYLYR 120 (580)
Q Consensus 101 DG~~~~~q~~i~pG~~~~y~ 120 (580)
+|+-|- |-.|.||++|.|.
T Consensus 67 ~GVVG~-qP~L~PGe~F~Y~ 85 (127)
T PRK05461 67 EGVVGE-QPVLAPGESFEYT 85 (127)
T ss_pred CceecC-CceECCCCCeEEe
Confidence 444442 5567999988865
No 123
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.41 E-value=1.6e+02 Score=28.58 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=49.0
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
-..++.|+.+++.+.-.+-+ |+|+|-+.+ ...|.+ ||....+.|.+
T Consensus 144 ~l~lP~~~~v~~~itS~DVi--------------HSf~vP~lg-----------------~K~Dav---PGr~n~~~~~~ 189 (231)
T MTH00080 144 RCVLPCDTNIRFCITSSDVI--------------HSWALPSLS-----------------IKMDAM---SGILSTLCYSF 189 (231)
T ss_pred ceEeecCcEEEEEEEeCccc--------------ccccccccC-----------------ceeecc---CCceEEEEEEE
Confidence 37899999999999987654 455554432 334554 57777889999
Q ss_pred cCceeeEEeeecchhhh-cccEEEEe
Q 008038 527 DNPGAWAFHCHIEPHFH-IGMGVVLA 551 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d-~GM~~~~~ 551 (580)
+.||.+.--|--+==.. .-|-..++
T Consensus 190 ~~~G~y~g~CsE~CG~~Hs~M~~~v~ 215 (231)
T MTH00080 190 PMPGVFYGQCSEICGANHSFMPIAVE 215 (231)
T ss_pred cCceEEEEEehhhcCcCccCCEEEEE
Confidence 99999999998543332 23444443
No 124
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=27.19 E-value=1.9e+02 Score=27.83 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=23.5
Q ss_pred EEEEecCCEEEEEEeecCC------ceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEE
Q 008038 234 ILHVQPNKTYRLRIASTTA------LASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSV 293 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~------~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv 293 (580)
.|.-+-|.++.++|-|+.. .....+.+||...++ .....|.|.|||.+.+
T Consensus 111 DIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~----------~aG~~l~L~PGESiTL 166 (225)
T PF07385_consen 111 DIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTV----------PAGTQLRLNPGESITL 166 (225)
T ss_dssp EEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-----------TT-EEEE-TT-EEEE
T ss_pred heeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEe----------cCCceEEeCCCCeEee
Confidence 3444445566666666542 122333344443333 2356799999999876
No 125
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.01 E-value=2.5e+02 Score=26.15 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccccCCceEEEEEEEEEEEeC---CCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCCceeeeec
Q 008038 14 CWILMLCSVFETSYGSKTRHYKWEVEYMFWS---PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWH 90 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~~~siH~H 90 (580)
|++++++++..+..........|.+.-...+ ..|... +|.+++.|......+.+-+-
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~a~llv~K~il~~~~v~g~~v--------------------~V~~~iyN~G~~~A~dV~l~ 60 (181)
T PF05753_consen 1 MALFLLALLALASVAQEDSPARLLVSKQILNKYLVEGEDV--------------------TVTYTIYNVGSSAAYDVKLT 60 (181)
T ss_pred ChhhhHHHHHHHHhccCCCCcEEEEEEeeccccccCCcEE--------------------EEEEEEEECCCCeEEEEEEE
Q ss_pred cccccCCCCC--CCCCCCccccCCCCCeEEEEEEc--CCCcce
Q 008038 91 GIRQLGTPWA--DGTASISQCPINPGETYLYRFKV--DKAGTY 129 (580)
Q Consensus 91 G~~~~~~~~~--DG~~~~~q~~i~pG~~~~y~f~~--~~~Gt~ 129 (580)
--..+.+.+. .|..-.+-.-|+||++.++.|.+ ...|.|
T Consensus 61 D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f 103 (181)
T PF05753_consen 61 DDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYF 103 (181)
T ss_pred CCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEE
No 126
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=26.24 E-value=64 Score=25.75 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCCCeEEecCCCEEEEE
Q 008038 48 KESIVMGINGQFPGPTIRARAGDTIAVE 75 (580)
Q Consensus 48 ~~~~~~~~NG~~pgP~l~v~~Gd~v~v~ 75 (580)
.+...+.+||..-++--+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 5677899999988899999999999875
No 127
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.15 E-value=2.2e+02 Score=27.64 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=47.6
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhhc
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQRS 140 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~~ 140 (580)
..|.+..|..|++.++-+ +.- |+...+. -| + +...-||..-...|.+.++|+|+-.|.- -...-
T Consensus 140 n~lvlP~~~~v~~~~tS~--DVi-----Hsf~ip~----~~---~-k~da~PG~~~~~~~~~~~~G~~~g~C~e~CG~~H 204 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAE--DVL-----HSWAVPA----LG---V-KMDAVPGRLNQTAFIASRPGVFYGQCSEICGANH 204 (230)
T ss_pred ceEEEecCcEEEEEEEeC--ccc-----cceeccc----cC---C-ccccCCCceEEEEEEeCCceEEEEEChhhccccc
Confidence 467888888888888777 222 3333221 11 1 3445589998889999999999999982 11112
Q ss_pred cccEEEEEEEc
Q 008038 141 AGLYGSLIVDV 151 (580)
Q Consensus 141 ~Gl~G~liV~~ 151 (580)
+.|.+.+.|.+
T Consensus 205 ~~M~~~v~vv~ 215 (230)
T MTH00129 205 SFMPIVVEAVP 215 (230)
T ss_pred cCCcEEEEEEC
Confidence 34566666654
No 128
>PRK13202 ureB urease subunit beta; Reviewed
Probab=25.60 E-value=1.8e+02 Score=24.25 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=38.7
Q ss_pred EEEEecC--CEEEEEEeecCCceeEEEEEeCeeeEE--------EEECCcccCceeeeeEEEcCCceEEEEEEe
Q 008038 234 ILHVQPN--KTYRLRIASTTALASLNLAVKNHKMVV--------VEADGNYVQPFEVDDMDIYSGESYSVLLTT 297 (580)
Q Consensus 234 ~~~v~~G--e~~rlRliNag~~~~~~~~i~gh~~~v--------ia~DG~~v~P~~~d~v~l~pGeR~dv~v~~ 297 (580)
.+.+.+| +++++++.|.|.. .+.+-.|=|=+++ -++=|--+.=....+|...||+.-+|.+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDR-PVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCC-ceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4778888 5789999999844 4444444343322 122233222224567888999998887754
No 129
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.26 E-value=3.3e+02 Score=26.45 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=49.2
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
-+.++.|+.|++.+.+.+-. |+|+|-+.+ ...|. -||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~vP~~~-----------------~k~da---iPG~~~~~~~~~ 186 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADVI--------------HSWTVPSLG-----------------VKVDA---VPGRLNQIGFTI 186 (228)
T ss_pred eEEEecCCEEEEEEEeCCcc--------------ccccccccC-----------------cceec---CCCceEEEEEEe
Confidence 48889999999999987653 445554432 12233 368888889999
Q ss_pred cCceeeEEeeecchhhhcc-cEEEE
Q 008038 527 DNPGAWAFHCHIEPHFHIG-MGVVL 550 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d~G-M~~~~ 550 (580)
+.||.+..-|.-+-..... |-..+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v 211 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVL 211 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEE
Confidence 9999999999876655444 43444
No 130
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=25.15 E-value=3.3e+02 Score=26.23 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=61.4
Q ss_pred CCCceeEEEEEcCCCCCCeEEecCCCEEEEEEEeCCCCC-----ceeeeeccccccCCCCCCCCCCCccccCCCCCeEEE
Q 008038 45 PDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTE-----GVVIHWHGIRQLGTPWADGTASISQCPINPGETYLY 119 (580)
Q Consensus 45 ~~g~~~~~~~~NG~~pgP~l~v~~Gd~v~v~v~N~l~~~-----~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y 119 (580)
++|..---+++.|.+-.-+|.|..|-.+++++.=+ .+. ..+--+|+. ..++-++....
T Consensus 80 ~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rk-dpspcle~i~~pdfgia----------------anlpl~q~ssI 142 (272)
T COG4633 80 PNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRK-DPSPCLESIMSPDFGIA----------------ANLPLNQVSSI 142 (272)
T ss_pred cCCceEEEEEEeCCccceeEEEecCcceEeeeccC-CCCcchhhccccccccc----------------ccCCcCceeEE
Confidence 44444445566666655789999999999999887 332 233334433 23556888999
Q ss_pred EEEcCCCcceeeecCcchhhccccEEEEEEEcCCC
Q 008038 120 RFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADG 154 (580)
Q Consensus 120 ~f~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~ 154 (580)
+|+..++|.|-+-|-.. -|.|.++|++..+
T Consensus 143 e~T~~s~ge~af~cgmn-----m~~G~~~vet~~~ 172 (272)
T COG4633 143 EFTPISKGEYAFLCGMN-----MFRGNIQVETLTG 172 (272)
T ss_pred Eeccccccchhhhcchh-----hccCeeEEEecCC
Confidence 99999999998888743 2778899997654
No 131
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=25.14 E-value=3.6e+02 Score=21.55 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=33.8
Q ss_pred CEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 008038 241 KTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 310 (580)
Q Consensus 241 e~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~ 310 (580)
..++|.|.|.|.. ...|.+.. .... .....++.|.+|++.++.+.... ..|-|-+..+
T Consensus 20 g~l~l~l~N~g~~-~~~~~v~~-------~~y~---~~~~~~~~v~ag~~~~~~w~l~~-s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSA-AVTFTVYD-------NAYG---GGGPWTYTVAAGQTVSLTWPLAA-SGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCC-cEEEEEEe-------CCcC---CCCCEEEEECCCCEEEEEEeecC-CCCcEEEEEE
Confidence 4799999998755 44444432 1111 11235677777887777777743 3455655444
No 132
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.89 E-value=1.9e+02 Score=28.82 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=49.7
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.+++.+.-.+-. |+|+|-+.+ ..+|.+ ||....+.|.+
T Consensus 175 ~lvlP~~~~v~~~ltS~DVi--------------HSf~vP~lg-----------------vK~Dai---PGr~n~~~~~~ 220 (262)
T MTH00027 175 RLILPVDTNVRVLITAADVL--------------HSWTVPSLA-----------------VKMDAV---PGRINETGFLI 220 (262)
T ss_pred eEEEeeCcEEEEEEEcCccc--------------cceeccccc-----------------CcccCC---CCceeeEEEEc
Confidence 48899999999998877654 566665442 334554 57777889999
Q ss_pred cCceeeEEeeecchhhh-cccEEEEe
Q 008038 527 DNPGAWAFHCHIEPHFH-IGMGVVLA 551 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d-~GM~~~~~ 551 (580)
+.||.+.-.|.-+-=.. ..|-..++
T Consensus 221 ~~~G~y~g~CsE~CG~~Hs~Mpi~v~ 246 (262)
T MTH00027 221 KRPGIFYGQCSEICGANHSFMPIVVE 246 (262)
T ss_pred CCcEEEEEEcchhcCcCcCCCeEEEE
Confidence 99999999999654433 33444443
No 133
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=24.62 E-value=1.8e+02 Score=27.88 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=50.5
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecC--cchhh
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGH--LGMQR 139 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H--~~~~~ 139 (580)
..|.+..|..|++.++-+ +.-||...-.+.. +.-.-||..-...|+++++|+|+=.|- -+.+-
T Consensus 130 n~l~iP~g~~v~~~ltS~--DViHsf~vP~l~~-------------k~daiPG~~~~~~~~~~~~G~y~g~Cae~CG~~H 194 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSA--DTMTSFWIPQLGG-------------QKYAMTGMTMNWYLQADQVGTYRGRNANFNGEGF 194 (217)
T ss_pred CcEEEECCCEEEEEEECC--chhhhhhchhhCc-------------eeecCCCceEEEEEEeCCCEEEEEEehhhcCccc
Confidence 679999999999999988 3333333222211 334558999999999999999998886 22222
Q ss_pred ccccEEEEEEEcC
Q 008038 140 SAGLYGSLIVDVA 152 (580)
Q Consensus 140 ~~Gl~G~liV~~~ 152 (580)
+-|..-+.|.++
T Consensus 195 -s~M~~~v~v~~~ 206 (217)
T TIGR01432 195 -ADQTFDVNAVSE 206 (217)
T ss_pred -cCCeEEEEEeCH
Confidence 236666666653
No 134
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.61 E-value=1.8e+02 Score=28.40 Aligned_cols=73 Identities=8% Similarity=0.018 Sum_probs=47.1
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc---chh
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL---GMQ 138 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~---~~~ 138 (580)
..|.+..|..|++.++.. +.-|+...-++. + +.-.-||..-...|.+.++|+|+--|.- ..|
T Consensus 144 n~lvlP~~~~v~~~itS~--DViHsf~vp~lg------------~-k~daiPG~~~~~~~~~~~~G~y~g~Cse~CG~~H 208 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAA--DVLHSFAVPSLS------------V-KIDAVPGRLNQTSFFIKRPGVFYGQCSEICGANH 208 (234)
T ss_pred eEEEEecCcEEEEEEEeC--chhccccccccC------------c-eeEccCCceEeEEEEeCCCEEEEEEChhhcCccc
Confidence 468899999999999998 333333222221 1 2334578888888889999999988872 122
Q ss_pred hccccEEEEEEEc
Q 008038 139 RSAGLYGSLIVDV 151 (580)
Q Consensus 139 ~~~Gl~G~liV~~ 151 (580)
+-|-..+.+.+
T Consensus 209 --s~M~i~v~vv~ 219 (234)
T MTH00051 209 --SFMPIVIEGVS 219 (234)
T ss_pred --ccCeeEEEEEC
Confidence 22555555554
No 135
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.35 E-value=2.3e+02 Score=27.68 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=46.7
Q ss_pred eeEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEE
Q 008038 446 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 525 (580)
Q Consensus 446 ~~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ 525 (580)
+.+.++.|+.+++.+.+.+-. |+|.|-+.+ ...|.+ ||....+.|.
T Consensus 144 n~lvlP~~~~v~~~itS~DVi--------------Hsf~vp~lg-----------------~k~dai---PG~~~~~~~~ 189 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADVL--------------HSFAVPSLS-----------------VKIDAV---PGRLNQTSFF 189 (234)
T ss_pred eEEEEecCcEEEEEEEeCchh--------------ccccccccC-----------------ceeEcc---CCceEeEEEE
Confidence 348899999999999987654 455554432 223433 6777788999
Q ss_pred ecCceeeEEeeecchhhhcc
Q 008038 526 ADNPGAWAFHCHIEPHFHIG 545 (580)
Q Consensus 526 adnpG~w~~HCHil~H~d~G 545 (580)
++.||.+..-|.-+=-....
T Consensus 190 ~~~~G~y~g~Cse~CG~~Hs 209 (234)
T MTH00051 190 IKRPGVFYGQCSEICGANHS 209 (234)
T ss_pred eCCCEEEEEEChhhcCcccc
Confidence 99999999999875444333
No 136
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=24.08 E-value=2e+02 Score=23.95 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=37.8
Q ss_pred EEEEecC-CEEEEEEeecCCceeEEEEEeCeeeEE--------EEECCcccCceeeeeEEEcCCceEEEEEEe
Q 008038 234 ILHVQPN-KTYRLRIASTTALASLNLAVKNHKMVV--------VEADGNYVQPFEVDDMDIYSGESYSVLLTT 297 (580)
Q Consensus 234 ~~~v~~G-e~~rlRliNag~~~~~~~~i~gh~~~v--------ia~DG~~v~P~~~d~v~l~pGeR~dv~v~~ 297 (580)
.+.+.+| ++..+.+.|.|.. .+.+-.|=|=+++ -++=|--+.=....+|...|||.-+|.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDR-PIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCc-ceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 4667777 5569999999844 4444444343322 222233332224567889999999987754
No 137
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.75 E-value=2.5e+02 Score=27.28 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=42.5
Q ss_pred EEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecC
Q 008038 234 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRG 313 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~ 313 (580)
.+.++.|+.+||++--+.. .|.|.+.....+ +..-||..-.+.+++++ +|.|...|...-
T Consensus 141 ~l~lP~~~~v~~~~tS~DV--iHsf~vp~l~~k----------------~davPG~~~~~~~~~~~--~G~y~g~Cse~C 200 (227)
T MTH00154 141 RLVLPMNTQIRILITAADV--IHSWTVPSLGVK----------------VDAVPGRLNQLNFLINR--PGLFFGQCSEIC 200 (227)
T ss_pred eEEEecCCEEEEEEEcCch--hhheeccccCCe----------------eecCCCceEEEEEEEcC--ceEEEEEeechh
Confidence 6889999999998876543 455666543332 33447888888888876 899999887543
No 138
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=23.49 E-value=4.7e+02 Score=22.39 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=37.9
Q ss_pred EEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCccc-CceeeeeEEEcCCceEEEEEEeCC
Q 008038 234 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQ 299 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v-~P~~~d~v~l~pGeR~dv~v~~~~ 299 (580)
.+++.....|+|.+...+ ...+.|+|.. |+..++..- .+.....+.|..|++|.+.|...+
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 355555556999885443 4578888753 333333221 233445688888888888887754
No 139
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=23.48 E-value=1.4e+02 Score=30.52 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=43.6
Q ss_pred EEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeecC
Q 008038 234 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRG 313 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~~ 313 (580)
.+.+..|+.++|++-..... |+|.|. ...-.+..-||.+-.+-+.+++ +|.|...|....
T Consensus 152 eL~iP~g~pV~f~lTS~DVi--HSF~IP----------------~Lg~K~damPG~~n~l~~~a~~--~G~Y~G~CaEyC 211 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM--NSFFIP----------------RLGSQIYAMAGMQTRLHLIANE--PGTYDGISASYS 211 (315)
T ss_pred cEEEecCCEEEEEEEEchhh--hhhhhh----------------hhCCeeecCCCceeEEEEEcCC--CEEEEEEChhhc
Confidence 68888999999999876643 444444 3333455567888888888876 899999887654
Q ss_pred C
Q 008038 314 R 314 (580)
Q Consensus 314 ~ 314 (580)
.
T Consensus 212 G 212 (315)
T PRK10525 212 G 212 (315)
T ss_pred C
Confidence 3
No 140
>PF12306 PixA: Inclusion body protein; InterPro: IPR021087 This entry represents bacterial proteins that are typically between 173 and 191 amino acids in length. PixA is thought to be specifically produced in Xenorhabdus nematophila. It is an inclusion body protein []. This signature also identifies AidA.
Probab=23.26 E-value=3.9e+02 Score=24.65 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=21.0
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeecccc
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIR 93 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~ 93 (580)
..|.++.||.|+.|.+=--.....+.=+.++.
T Consensus 58 L~i~a~~GD~Irwr~tSls~n~~y~v~ly~~~ 89 (172)
T PF12306_consen 58 LSIKANVGDTIRWRATSLSGNSEYSVILYKFV 89 (172)
T ss_pred eEEeccCCCEEEEEEEeeccCCceeEEEEEee
Confidence 68999999999999876422223334444443
No 141
>PLN02957 copper, zinc superoxide dismutase
Probab=23.23 E-value=5.1e+02 Score=25.22 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=57.7
Q ss_pred cEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEe----ecCCCCCcccccccCCCCCCccc--eEEeCCCcEEEEEEEec
Q 008038 454 TTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLG----RGEGKFTKEDEKKFNLKNPPLKN--TAVIFPYGWTALRFVAD 527 (580)
Q Consensus 454 ~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~----~~~g~~~~~~~~~~~~~~p~~rD--Tv~vpp~g~v~irf~ad 527 (580)
..++..|.+.... .|=||+|-.== +. +..+.|+|.... -.....-| .+.+...|.+.+++..+
T Consensus 106 v~i~~~~~GL~pg------~hg~hiHe~Gd--~~~~~~saG~hfnp~~~~---h~~~h~GDLgni~~~~~G~a~~~~~~~ 174 (238)
T PLN02957 106 ARIEAAFSGLSPG------THGWSINEYGD--LTRGAASTGKVYNPSDDD---TDEEPLGDLGTLEADENGEATFSGTKE 174 (238)
T ss_pred EEEEEEEcCCCCC------cEEEEEcCCCC--CCCCccccCCCCCCccCC---CCCCCCCccCCEEeCCCceEEEEEECC
Confidence 4677777776544 79999994321 21 234667652110 00122333 45666678777777654
Q ss_pred CceeeEEeeecchhhhcccEEEEecccccccCCCccccccCCCCc---CCCCCCC
Q 008038 528 NPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGK---RFMNPKQ 579 (580)
Q Consensus 528 npG~w~~HCHil~H~d~GM~~~~~~~~~~~~~~p~~~~~c~~~~~---~~~~~~~ 579 (580)
.-.. ..-.|=..++-..+|.. .....||+-.+ -|.|.||
T Consensus 175 ~~~l---------~~iiGrs~vih~~~D~~----~~~~~~gvi~rsag~~~n~k~ 216 (238)
T PLN02957 175 KLKV---------WDLIGRSLAVYATADKS----GPGIAAAVIARSAGVGENYKK 216 (238)
T ss_pred CcCc---------cccCCcEEEEEeCCCCC----CCCeEEEEEecccccccCCce
Confidence 3222 14567788887776642 11278887766 6777775
No 142
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.02 E-value=92 Score=27.86 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.3
Q ss_pred cccCCCCCeEEEEEEc----CCCcceeeecC
Q 008038 108 QCPINPGETYLYRFKV----DKAGTYFYHGH 134 (580)
Q Consensus 108 q~~i~pG~~~~y~f~~----~~~Gt~wYH~H 134 (580)
..||+||++++..+.. ...|+|.|++-
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 4689999999999954 45699999886
No 143
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.32 E-value=3.3e+02 Score=26.38 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=45.4
Q ss_pred CeEEecCCCEEEEEEEeCCCCCceeeeeccccccCCCCCCCCCCCccccCCCCCeEEEEEEcCCCcceeeecCc-chhhc
Q 008038 62 PTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHL-GMQRS 140 (580)
Q Consensus 62 P~l~v~~Gd~v~v~v~N~l~~~~~siH~HG~~~~~~~~~DG~~~~~q~~i~pG~~~~y~f~~~~~Gt~wYH~H~-~~~~~ 140 (580)
..|.+..|..|++.++-. +.- |+...+ .-| + +.-.-||..-...|.++++|+|+--|.- -...-
T Consensus 140 n~lvlP~~~~v~~~~tS~--DVi-----Hsf~ip----~lg---~-k~daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~H 204 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSE--DVL-----HSWAVP----SLG---L-KTDAIPGRLNQTTLMSTRPGLYYGQCSEICGSNH 204 (227)
T ss_pred ceEEecCCCEEEEEEEEC--ccc-----cccccc----ccc---c-ceecCCCceEEEEEecCCcEEEEEECccccCcCc
Confidence 467778888888887776 222 333322 112 1 3344589888889999999999998872 11111
Q ss_pred cccEEEEEEEc
Q 008038 141 AGLYGSLIVDV 151 (580)
Q Consensus 141 ~Gl~G~liV~~ 151 (580)
+-|...+.+.+
T Consensus 205 ~~M~~~v~v~~ 215 (227)
T MTH00098 205 SFMPIVLELVP 215 (227)
T ss_pred CCceEEEEEeC
Confidence 23555555544
No 144
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.24 E-value=2.8e+02 Score=26.92 Aligned_cols=63 Identities=14% Similarity=0.298 Sum_probs=46.1
Q ss_pred eEEccCCcEEEEEEEcCCCCCCCCCCCCCeeecCCCeEEEeecCCCCCcccccccCCCCCCccceEEeCCCcEEEEEEEe
Q 008038 447 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 526 (580)
Q Consensus 447 ~~~~~~G~~v~~~l~N~~~~~~~~~~~HP~HlHG~~F~vv~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 526 (580)
.+.++.|+.+++.+.-.+-. |+|.|-+.+ ...|.+ ||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi--------------Hsf~vP~lg-----------------~k~da~---PG~~n~~~~~~ 186 (228)
T MTH00076 141 RMVVPMESPIRMLITAEDVL--------------HSWAVPSLG-----------------IKTDAI---PGRLNQTSFIA 186 (228)
T ss_pred eEEEecCCEEEEEEEecccc--------------ccccccccC-----------------ceEEcc---CCcceeEEEEe
Confidence 48899999999999876654 556664432 223433 67778889999
Q ss_pred cCceeeEEeeecchhhh
Q 008038 527 DNPGAWAFHCHIEPHFH 543 (580)
Q Consensus 527 dnpG~w~~HCHil~H~d 543 (580)
+.||.+..-|.-+-...
T Consensus 187 ~~~G~~~g~C~e~CG~~ 203 (228)
T MTH00076 187 SRPGVYYGQCSEICGAN 203 (228)
T ss_pred CCcEEEEEEChhhcCcc
Confidence 99999999998755443
No 145
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.09 E-value=2.7e+02 Score=27.09 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=41.1
Q ss_pred EEEEecCCEEEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 008038 234 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 312 (580)
Q Consensus 234 ~~~v~~Ge~~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~g~y~l~~~~~ 312 (580)
.+.++.|+.+||++--+.. .|.|.+.+...+ +..-||..-.+.+.+++ +|.|+..|+..
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~iP~lg~k----------------~daiPG~~~~~~~~~~~--~G~~~g~Cse~ 199 (230)
T MTH00185 141 RMVVPMESPIRVLITAEDV--LHSWTVPALGVK----------------MDAVPGRLNQATFIISR--PGLYYGQCSEI 199 (230)
T ss_pred eEEEecCCEEEEEEEcCcc--cccccccccCce----------------eEecCCceEEEEEEeCC--cEEEEEEchhh
Confidence 6889999999998876543 455555544332 33447877777777776 88998888654
No 146
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=20.89 E-value=3.2e+02 Score=23.78 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=40.0
Q ss_pred EEEEEeecCCceeEEEEEeCeeeEEEEECCcccCceeeeeEEEcCCceEEEEEEeCCCCC
Q 008038 243 YRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPS 302 (580)
Q Consensus 243 ~rlRliNag~~~~~~~~i~gh~~~via~DG~~v~P~~~d~v~l~pGeR~dv~v~~~~~~~ 302 (580)
+.|-|-|.+....+.+ .+..-...||..++.+...-+.|.|=+..+++|+-++..+
T Consensus 27 ~tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~~G 82 (125)
T PF11322_consen 27 ATLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDTSG 82 (125)
T ss_pred EEEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccCCC
Confidence 3556667765543322 2334456779999988889999999999999998876444
No 147
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.87 E-value=1.4e+02 Score=30.59 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=40.1
Q ss_pred CCCccceEEeCCCcEEEEEEEecCceeeEEeee-----------------cchhhhcccEEEEecccccccC----CCcc
Q 008038 505 NPPLKNTAVIFPYGWTALRFVADNPGAWAFHCH-----------------IEPHFHIGMGVVLALGVETVGN----IPNQ 563 (580)
Q Consensus 505 ~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCH-----------------il~H~d~GM~~~~~~~~~~~~~----~p~~ 563 (580)
.|..---+.|.|-..-.+|++....|. || |+-||..|-.--+-++...++. +|-.
T Consensus 18 ~PL~IEei~V~pPka~EVRIKI~~t~v----CHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf 93 (375)
T KOG0022|consen 18 KPLVIEEIEVAPPKAHEVRIKILATGV----CHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLF 93 (375)
T ss_pred CCeeEEEEEeCCCCCceEEEEEEEEee----ccccceeecCCCccccCceEecccceeEEEEecCCccccCCCCEEeecc
Confidence 345555677776666666666544443 55 5557777766666666655543 7777
Q ss_pred ccccCCCCc
Q 008038 564 ALACGLTGK 572 (580)
Q Consensus 564 ~~~c~~~~~ 572 (580)
.|+||.++.
T Consensus 94 ~p~CgeCk~ 102 (375)
T KOG0022|consen 94 TPQCGECKF 102 (375)
T ss_pred ccCCCCccc
Confidence 788887764
No 148
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=20.58 E-value=3.8e+02 Score=27.85 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.2
Q ss_pred ccccCCCCCeEEEEEEcC
Q 008038 107 SQCPINPGETYLYRFKVD 124 (580)
Q Consensus 107 ~q~~i~pG~~~~y~f~~~ 124 (580)
...||.|||+.+.+..++
T Consensus 336 d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 336 DQSAIAPGETVEVKMEAK 353 (399)
T ss_pred CCCCcCCCcceEEEEEEe
Confidence 357999999999998873
No 149
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.50 E-value=65 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEEcCCCC-CCeEEecCCCEEEE
Q 008038 52 VMGINGQFP-GPTIRARAGDTIAV 74 (580)
Q Consensus 52 ~~~~NG~~p-gP~l~v~~Gd~v~v 74 (580)
-+.+||+.- -|..+++.||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 356799764 68899999999976
No 150
>COG3241 Azurin [Energy production and conversion]
Probab=20.23 E-value=1.2e+02 Score=25.98 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCcccCce----eeeeEEEcCCceEEEEEEeCCCCCc-ceEEEEeecC
Q 008038 271 DGNYVQPF----EVDDMDIYSGESYSVLLTTNQDPSY-NYWISAGVRG 313 (580)
Q Consensus 271 DG~~v~P~----~~d~v~l~pGeR~dv~v~~~~~~~g-~y~l~~~~~~ 313 (580)
|-.|++|- -..+-.|+.|||-++.++...-..| .|.+.|...+
T Consensus 91 d~dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCtFPG 138 (151)
T COG3241 91 DTDYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCTFPG 138 (151)
T ss_pred ccccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEecCC
Confidence 34556553 3567899999999999988755455 6888887533
Done!