BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008039
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 389 ASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428
+SG +G DYY ++G+ RG S +L++A+ L+L+ PDK
Sbjct: 2 SSGSSG--DYYEILGVSRGASDEDLKKAYRRLALKFHPDK 39
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428
DYY +GL RG S E++RA+ +LR+ PDK
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDK 35
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 389 ASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCE 437
+SG +G +YY ++G++ S ++++A+ L+LR PDK E E
Sbjct: 2 SSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAE 50
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 389 ASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCE 437
+SG +G VDYY ++ + R S +++A+ L+L+ PDK E E
Sbjct: 2 SSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAE 50
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 31/130 (23%)
Query: 300 ESIADCNKTLALEPSCIQALDTRA--LLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPG 357
E+I C++ L +EP + AL RA L+E +Y+ ++D +
Sbjct: 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEE----------------MYDEAIQDYETA- 355
Query: 358 PAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAH 417
+ HN ++I L E QR+ ++ DYY ++G++R + E+ +A+
Sbjct: 356 ---QEHNENDQQIREGL--------EKAQRLLK-QSQKRDYYKILGVKRNAKKQEIIKAY 403
Query: 418 LLLSLRHKPD 427
L+L+ PD
Sbjct: 404 RKLALQWHPD 413
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 389 ASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPD 427
+SG +G DYY ++G+ R S+ E+++A+ L+ ++ PD
Sbjct: 2 SSGSSG--DYYQILGVPRNASQKEIKKAYYQLAKKYHPD 38
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 27/128 (21%)
Query: 300 ESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPA 359
E+I C++ L EP + AL RA + + D E
Sbjct: 313 EAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYE------------------T 354
Query: 360 WKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLL 419
+ HN ++I L +++ ++R DYY ++G++R + E+ +A+
Sbjct: 355 AQEHNENDQQIREGLEKAQRLLKQSQKR---------DYYKILGVKRNAKKQEIIKAYRK 405
Query: 420 LSLRHKPD 427
L+L+ PD
Sbjct: 406 LALQWHPD 413
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318
Y +A++H+++ + + P+ A+ Y +RA Y ++ DC + + LEP+ I+
Sbjct: 32 YPQAMKHYTEAI---KRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86
Query: 319 LDTRALLLETIR 330
+A LE ++
Sbjct: 87 YTRKAAALEAMK 98
>pdb|4FAK|A Chain A, Crystal Structure Of Orfx In Complex With
S-adenosylmethionine
Length = 163
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 369 EIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSL 422
EI GK+ + QEL QR+ G++ D+ +IG G + L+R++ LS
Sbjct: 81 EIQGKMLSSEGLAQELNQRMTQGQS---DFVFVIGGSNGLHKDVLQRSNYALSF 131
>pdb|1VH0|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|B Chain B, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|C Chain C, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|D Chain D, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|E Chain E, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|F Chain F, Crystal Structure Of A Hypothetical Protein
Length = 161
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 369 EIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSL 422
EI GK+ + QEL QR+ G++ D+ +IG G + L+R++ LS
Sbjct: 79 EIQGKMLSSEGLAQELNQRMTQGQS---DFVFVIGGSNGLHKDVLQRSNYALSF 129
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321
A++ +++++ + AP+ A Y +RA A E+IADCNK + +P+ ++A
Sbjct: 158 AVKAYTEMI---KRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212
Query: 322 RALLLETIRCLPDCLHDLE 340
+A ++ L L+
Sbjct: 213 KATAQIAVKEYASALETLD 231
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318
+ A++ +++++ + AP+ A Y +RA A E+IADCNK + +P+ ++A
Sbjct: 20 WPNAVKAYTEMI---KRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74
Query: 319 LDTRALLLETIRCLPDCLHDLE 340
+A ++ L L+
Sbjct: 75 YIRKATAQIAVKEYASALETLD 96
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 391 GETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428
G YY ++G++ ++ EL++A+ L+L++ PDK
Sbjct: 1 GMVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDK 38
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428
DYY ++G+ + E+ +A+ L++++ PD+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR 35
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428
DYY ++G+ + E+ +A+ L++++ PD+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR 35
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 392 ETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428
ETG YY ++G++ S +EL++A+ ++L+ PDK
Sbjct: 7 ETG---YYDVLGVKPDASDNELKKAYRKMALKFHPDK 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,856,673
Number of Sequences: 62578
Number of extensions: 417103
Number of successful extensions: 798
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 19
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)