Query 008039
Match_columns 580
No_of_seqs 496 out of 3767
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 18:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0550 Molecular chaperone (D 100.0 8.1E-38 1.8E-42 317.7 25.1 359 22-474 48-431 (486)
2 KOG0624 dsRNA-activated protei 100.0 1.1E-33 2.5E-38 281.2 30.0 302 24-474 153-454 (504)
3 KOG4626 O-linked N-acetylgluco 99.8 7.2E-20 1.6E-24 194.1 18.5 347 17-428 110-489 (966)
4 KOG4626 O-linked N-acetylgluco 99.8 9E-20 2E-24 193.3 19.1 130 161-345 356-485 (966)
5 TIGR00990 3a0801s09 mitochondr 99.8 2.5E-17 5.5E-22 186.9 34.4 259 13-345 113-428 (615)
6 KOG0548 Molecular co-chaperone 99.8 3.1E-18 6.8E-23 180.6 22.8 225 25-345 226-455 (539)
7 TIGR00990 3a0801s09 mitochondr 99.8 8.1E-17 1.7E-21 182.8 25.6 189 37-345 305-496 (615)
8 PRK15174 Vi polysaccharide exp 99.7 6.5E-16 1.4E-20 176.2 29.4 91 250-345 219-313 (656)
9 PRK15174 Vi polysaccharide exp 99.7 3.9E-15 8.5E-20 169.8 28.8 91 250-345 253-347 (656)
10 KOG0547 Translocase of outer m 99.7 6.5E-16 1.4E-20 161.0 18.7 205 23-346 360-567 (606)
11 KOG0547 Translocase of outer m 99.7 1.2E-15 2.7E-20 159.0 20.2 251 22-346 114-424 (606)
12 PRK12370 invasion protein regu 99.7 4.3E-15 9.2E-20 166.5 25.9 195 30-344 265-469 (553)
13 KOG0624 dsRNA-activated protei 99.7 6.5E-14 1.4E-18 140.7 30.5 220 18-345 33-252 (504)
14 TIGR02521 type_IV_pilW type IV 99.7 1.4E-14 3.1E-19 140.6 25.4 203 22-345 30-232 (234)
15 PRK11788 tetratricopeptide rep 99.7 1.8E-14 3.8E-19 153.7 25.6 204 27-345 39-243 (389)
16 KOG0553 TPR repeat-containing 99.7 5.9E-16 1.3E-20 154.0 12.3 101 240-345 78-178 (304)
17 KOG1126 DNA-binding cell divis 99.6 7.9E-15 1.7E-19 158.4 20.3 156 162-345 424-586 (638)
18 TIGR02917 PEP_TPR_lipo putativ 99.6 3.6E-14 7.8E-19 164.8 27.3 233 22-345 21-256 (899)
19 PRK11447 cellulose synthase su 99.6 1.5E-13 3.1E-18 166.6 32.7 252 38-342 281-555 (1157)
20 KOG4234 TPR repeat-containing 99.6 2.3E-15 5E-20 141.2 13.0 108 238-345 90-197 (271)
21 PRK11189 lipoprotein NlpI; Pro 99.6 2.8E-14 6.1E-19 147.5 22.6 197 22-345 63-265 (296)
22 TIGR02917 PEP_TPR_lipo putativ 99.6 3E-13 6.4E-18 157.2 30.8 267 18-345 528-799 (899)
23 PRK09782 bacteriophage N4 rece 99.6 1E-13 2.2E-18 162.8 26.0 231 22-345 476-706 (987)
24 PRK12370 invasion protein regu 99.6 1.3E-13 2.8E-18 154.6 25.8 186 39-345 317-502 (553)
25 PRK09782 bacteriophage N4 rece 99.6 6.1E-14 1.3E-18 164.6 23.1 230 26-346 512-741 (987)
26 KOG0548 Molecular co-chaperone 99.6 6.6E-13 1.4E-17 140.7 28.0 254 24-345 3-421 (539)
27 KOG1126 DNA-binding cell divis 99.6 3.9E-14 8.5E-19 153.1 18.9 291 39-428 332-624 (638)
28 PRK11788 tetratricopeptide rep 99.6 5E-13 1.1E-17 142.6 24.6 130 161-345 182-311 (389)
29 PRK11447 cellulose synthase su 99.6 5.6E-13 1.2E-17 161.5 28.0 285 26-345 354-700 (1157)
30 KOG1125 TPR repeat-containing 99.6 1.7E-13 3.6E-18 146.2 19.9 231 27-347 289-529 (579)
31 TIGR02521 type_IV_pilW type IV 99.6 7.7E-13 1.7E-17 128.3 22.6 170 58-345 29-198 (234)
32 KOG1155 Anaphase-promoting com 99.5 2.5E-12 5.5E-17 133.9 26.0 212 41-345 242-461 (559)
33 KOG0543 FKBP-type peptidyl-pro 99.5 1E-13 2.2E-18 143.3 14.2 131 238-386 203-343 (397)
34 PLN02789 farnesyltranstransfer 99.5 2.4E-12 5.3E-17 133.9 22.4 187 38-344 49-249 (320)
35 PF13429 TPR_15: Tetratricopep 99.5 8.2E-14 1.8E-18 142.6 11.3 261 24-345 9-277 (280)
36 TIGR03302 OM_YfiO outer membra 99.5 7.2E-12 1.6E-16 124.6 22.9 104 20-188 30-144 (235)
37 KOG1155 Anaphase-promoting com 99.5 4.2E-12 9E-17 132.3 20.5 183 40-342 344-533 (559)
38 PRK10049 pgaA outer membrane p 99.4 4.6E-11 9.9E-16 139.0 29.6 91 251-345 245-339 (765)
39 COG3063 PilF Tfp pilus assembl 99.4 6.3E-12 1.4E-16 121.1 18.3 91 250-343 110-200 (250)
40 KOG1125 TPR repeat-containing 99.4 8.4E-12 1.8E-16 133.4 20.3 235 17-335 313-561 (579)
41 COG0484 DnaJ DnaJ-class molecu 99.4 2.9E-13 6.3E-18 140.3 7.4 65 395-480 3-67 (371)
42 PRK10049 pgaA outer membrane p 99.4 5.3E-11 1.1E-15 138.5 26.3 207 38-345 249-456 (765)
43 KOG4648 Uncharacterized conser 99.4 8.8E-13 1.9E-17 132.6 9.8 102 240-346 94-195 (536)
44 PRK11189 lipoprotein NlpI; Pro 99.4 1.3E-11 2.9E-16 127.6 18.9 190 19-331 94-286 (296)
45 COG3063 PilF Tfp pilus assembl 99.4 7E-11 1.5E-15 113.9 21.8 203 22-345 34-236 (250)
46 KOG1129 TPR repeat-containing 99.4 9.5E-12 2.1E-16 124.6 15.6 204 22-345 255-458 (478)
47 TIGR03302 OM_YfiO outer membra 99.4 3.4E-11 7.4E-16 119.7 19.8 178 54-343 27-230 (235)
48 KOG1840 Kinesin light chain [C 99.4 1.4E-10 3E-15 126.5 24.0 226 19-346 195-439 (508)
49 KOG1840 Kinesin light chain [C 99.3 2.2E-10 4.8E-15 124.9 25.2 230 14-346 232-480 (508)
50 PRK15359 type III secretion sy 99.3 1.7E-11 3.6E-16 113.3 13.4 91 250-345 31-121 (144)
51 KOG1173 Anaphase-promoting com 99.3 5.5E-11 1.2E-15 126.7 18.5 203 25-345 314-518 (611)
52 KOG2002 TPR-containing nuclear 99.3 5.9E-11 1.3E-15 133.0 19.6 221 42-346 146-372 (1018)
53 PRK15359 type III secretion sy 99.3 2.8E-11 6.1E-16 111.7 14.2 114 162-330 27-140 (144)
54 PRK15179 Vi polysaccharide bio 99.3 6.7E-11 1.4E-15 134.5 18.9 131 160-345 87-217 (694)
55 KOG4648 Uncharacterized conser 99.3 1.1E-12 2.4E-17 131.9 3.5 227 29-346 103-331 (536)
56 KOG0713 Molecular chaperone (D 99.3 4.7E-12 1E-16 128.0 7.8 68 394-482 14-81 (336)
57 KOG2002 TPR-containing nuclear 99.3 6.9E-10 1.5E-14 124.5 25.4 212 18-346 228-443 (1018)
58 KOG0553 TPR repeat-containing 99.3 4.1E-11 8.8E-16 119.8 12.9 100 21-188 79-178 (304)
59 PLN02789 farnesyltranstransfer 99.3 7.6E-10 1.7E-14 115.3 22.3 188 18-328 66-267 (320)
60 PRK10747 putative protoheme IX 99.2 1.2E-09 2.6E-14 117.8 23.8 225 38-345 165-390 (398)
61 PLN03088 SGT1, suppressor of 99.2 1.3E-10 2.9E-15 123.2 15.6 95 246-345 5-99 (356)
62 KOG2076 RNA polymerase III tra 99.2 1.5E-09 3.4E-14 121.1 24.3 292 18-343 202-510 (895)
63 TIGR00540 hemY_coli hemY prote 99.2 1.4E-09 3E-14 117.7 23.2 228 38-346 165-400 (409)
64 PRK10370 formate-dependent nit 99.2 3.4E-10 7.3E-15 110.2 15.8 101 228-345 70-173 (198)
65 PRK15363 pathogenicity island 99.2 2.6E-10 5.6E-15 105.2 13.6 92 250-346 42-133 (157)
66 KOG0551 Hsp90 co-chaperone CNS 99.2 7.2E-11 1.6E-15 118.8 10.1 103 243-346 81-183 (390)
67 PRK14574 hmsH outer membrane p 99.2 4E-09 8.6E-14 122.2 24.3 200 18-341 29-228 (822)
68 KOG1173 Anaphase-promoting com 99.2 6.1E-09 1.3E-13 111.4 23.0 273 28-428 249-522 (611)
69 KOG4642 Chaperone-dependent E3 99.1 1.7E-10 3.7E-15 111.5 9.8 99 243-346 10-108 (284)
70 PRK15179 Vi polysaccharide bio 99.1 4.5E-09 9.8E-14 119.7 22.8 180 24-323 49-229 (694)
71 KOG4162 Predicted calmodulin-b 99.1 9.1E-09 2E-13 113.4 23.7 248 37-346 489-784 (799)
72 KOG0545 Aryl-hydrocarbon recep 99.1 5E-10 1.1E-14 108.5 12.0 108 239-346 174-294 (329)
73 cd05804 StaR_like StaR_like; a 99.1 7.7E-09 1.7E-13 109.0 21.9 91 250-345 121-215 (355)
74 PRK10370 formate-dependent nit 99.1 4.2E-09 9E-14 102.6 17.7 122 39-275 52-176 (198)
75 TIGR02552 LcrH_SycD type III s 99.1 1.2E-09 2.5E-14 98.8 12.9 91 250-345 24-114 (135)
76 COG2956 Predicted N-acetylgluc 99.1 9.7E-09 2.1E-13 103.4 20.3 205 25-345 38-243 (389)
77 PRK14288 chaperone protein Dna 99.1 1.6E-10 3.5E-15 122.8 7.6 65 396-481 3-67 (369)
78 KOG1174 Anaphase-promoting com 99.1 5E-08 1.1E-12 101.0 24.3 219 41-345 213-467 (564)
79 KOG2076 RNA polymerase III tra 99.1 2.2E-08 4.7E-13 112.1 22.9 253 22-345 138-478 (895)
80 cd05804 StaR_like StaR_like; a 99.0 9.2E-09 2E-13 108.4 19.0 177 55-345 1-177 (355)
81 KOG0717 Molecular chaperone (D 99.0 3.7E-10 7.9E-15 117.7 7.8 71 394-484 6-76 (508)
82 PRK14296 chaperone protein Dna 99.0 3E-10 6.5E-15 120.7 7.2 64 395-480 3-66 (372)
83 TIGR00540 hemY_coli hemY prote 99.0 8E-08 1.7E-12 104.0 26.0 214 14-345 74-292 (409)
84 PRK10747 putative protoheme IX 99.0 8.7E-08 1.9E-12 103.3 25.2 272 14-345 74-357 (398)
85 KOG0550 Molecular chaperone (D 99.0 3.3E-09 7.2E-14 109.7 11.8 171 38-314 181-353 (486)
86 PRK14279 chaperone protein Dna 99.0 8E-10 1.7E-14 118.3 7.4 66 395-481 8-73 (392)
87 smart00271 DnaJ DnaJ molecular 99.0 1.7E-09 3.7E-14 84.1 7.0 57 396-471 1-57 (60)
88 KOG0712 Molecular chaperone (D 99.0 6.7E-10 1.5E-14 113.9 5.8 66 395-484 3-68 (337)
89 PRK14286 chaperone protein Dna 99.0 1.2E-09 2.6E-14 116.2 7.8 66 395-481 3-68 (372)
90 PF13414 TPR_11: TPR repeat; P 98.9 2.8E-09 6E-14 85.0 7.9 65 281-345 2-67 (69)
91 KOG4340 Uncharacterized conser 98.9 4.1E-08 8.9E-13 97.8 17.7 203 38-341 22-266 (459)
92 KOG0718 Molecular chaperone (D 98.9 1.3E-09 2.8E-14 113.6 7.5 69 394-480 7-75 (546)
93 PLN03088 SGT1, suppressor of 98.9 1.7E-08 3.7E-13 107.1 15.8 114 162-330 5-118 (356)
94 KOG1130 Predicted G-alpha GTPa 98.9 3E-08 6.5E-13 102.4 16.6 248 28-346 22-305 (639)
95 PRK14282 chaperone protein Dna 98.9 1.5E-09 3.4E-14 115.4 7.5 67 395-481 3-69 (369)
96 PRK14287 chaperone protein Dna 98.9 1.7E-09 3.7E-14 115.0 7.8 65 395-481 3-67 (371)
97 KOG0691 Molecular chaperone (D 98.9 2.2E-09 4.8E-14 109.0 8.1 69 395-484 4-72 (296)
98 TIGR02552 LcrH_SycD type III s 98.9 3.4E-08 7.4E-13 89.2 14.6 105 160-319 18-122 (135)
99 PF00226 DnaJ: DnaJ domain; I 98.9 3.8E-09 8.3E-14 83.4 7.3 58 397-474 1-58 (64)
100 cd06257 DnaJ DnaJ domain or J- 98.9 3.1E-09 6.8E-14 81.1 6.6 54 397-470 1-54 (55)
101 PRK14574 hmsH outer membrane p 98.9 8.2E-08 1.8E-12 111.4 21.2 178 48-346 22-199 (822)
102 CHL00033 ycf3 photosystem I as 98.9 4E-08 8.7E-13 92.8 15.4 103 249-353 41-150 (168)
103 PTZ00037 DnaJ_C chaperone prot 98.9 2.1E-09 4.6E-14 115.6 7.2 63 394-481 26-88 (421)
104 PF12569 NARP1: NMDA receptor- 98.9 5E-07 1.1E-11 99.7 25.6 65 282-346 194-258 (517)
105 PRK14283 chaperone protein Dna 98.9 2.4E-09 5.3E-14 114.3 7.3 65 395-481 4-68 (378)
106 PRK14299 chaperone protein Dna 98.9 3.1E-09 6.8E-14 109.5 7.6 64 395-480 3-66 (291)
107 PRK14285 chaperone protein Dna 98.9 2.8E-09 6E-14 113.2 7.4 65 396-481 3-67 (365)
108 PRK14295 chaperone protein Dna 98.9 2.9E-09 6.4E-14 113.9 7.5 66 395-481 8-73 (389)
109 PRK14276 chaperone protein Dna 98.9 2.5E-09 5.5E-14 114.2 6.8 65 395-481 3-67 (380)
110 COG5010 TadD Flp pilus assembl 98.9 1.6E-07 3.5E-12 92.6 18.8 177 42-339 49-225 (257)
111 PRK14298 chaperone protein Dna 98.9 2.9E-09 6.4E-14 113.4 7.1 65 395-481 4-68 (377)
112 PRK14278 chaperone protein Dna 98.9 2.4E-09 5.3E-14 114.1 6.5 63 396-480 3-65 (378)
113 PRK14291 chaperone protein Dna 98.9 3.3E-09 7.2E-14 113.3 7.3 65 395-481 2-66 (382)
114 PF12895 Apc3: Anaphase-promot 98.9 6.7E-09 1.5E-13 86.5 7.5 84 255-342 1-84 (84)
115 PRK14277 chaperone protein Dna 98.9 4E-09 8.7E-14 112.9 7.6 66 395-481 4-69 (386)
116 PRK14294 chaperone protein Dna 98.9 4.6E-09 1E-13 111.7 7.9 66 395-481 3-68 (366)
117 PF13414 TPR_11: TPR repeat; P 98.9 1E-08 2.3E-13 81.7 8.1 62 247-313 7-69 (69)
118 KOG2376 Signal recognition par 98.9 3.4E-07 7.3E-12 98.7 21.7 189 38-345 24-253 (652)
119 PF13429 TPR_15: Tetratricopep 98.8 2.3E-08 5.1E-13 102.3 12.6 154 38-311 122-277 (280)
120 KOG1174 Anaphase-promoting com 98.8 1.4E-07 3E-12 97.7 17.9 187 38-345 312-500 (564)
121 PRK14301 chaperone protein Dna 98.8 4.5E-09 9.7E-14 111.9 7.0 66 395-481 3-68 (373)
122 PRK14280 chaperone protein Dna 98.8 4.9E-09 1.1E-13 111.8 7.2 64 396-481 4-67 (376)
123 PRK14284 chaperone protein Dna 98.8 5.5E-09 1.2E-13 112.0 7.5 63 397-480 2-64 (391)
124 KOG2003 TPR repeat-containing 98.8 2E-07 4.3E-12 97.2 18.0 221 39-345 469-689 (840)
125 KOG4555 TPR repeat-containing 98.8 8.4E-08 1.8E-12 84.9 12.8 96 245-345 45-144 (175)
126 PRK14720 transcript cleavage f 98.8 2.9E-07 6.4E-12 106.2 21.0 236 20-345 28-306 (906)
127 PRK10767 chaperone protein Dna 98.8 8.2E-09 1.8E-13 110.1 7.6 65 395-480 3-67 (371)
128 PRK14281 chaperone protein Dna 98.8 6.8E-09 1.5E-13 111.4 7.0 64 396-480 3-66 (397)
129 PRK15363 pathogenicity island 98.8 7E-08 1.5E-12 89.2 12.6 102 20-189 32-133 (157)
130 PRK14297 chaperone protein Dna 98.8 6.4E-09 1.4E-13 111.1 6.6 64 396-480 4-67 (380)
131 PRK02603 photosystem I assembl 98.8 1.3E-07 2.9E-12 89.7 15.1 96 250-347 42-144 (172)
132 KOG0376 Serine-threonine phosp 98.8 4.9E-09 1.1E-13 110.9 5.5 97 244-345 5-101 (476)
133 KOG0716 Molecular chaperone (D 98.8 9.8E-09 2.1E-13 100.9 7.0 66 395-481 30-95 (279)
134 TIGR02795 tol_pal_ybgF tol-pal 98.8 1E-07 2.2E-12 83.5 12.8 96 248-345 7-105 (119)
135 cd00189 TPR Tetratricopeptide 98.8 6.8E-08 1.5E-12 78.5 10.8 93 248-345 5-97 (100)
136 KOG2003 TPR repeat-containing 98.8 1.8E-07 3.8E-12 97.6 15.8 89 250-343 565-653 (840)
137 PRK10866 outer membrane biogen 98.8 1.6E-06 3.5E-11 87.1 22.4 179 22-305 31-235 (243)
138 PRK14290 chaperone protein Dna 98.7 1.3E-08 2.9E-13 108.1 7.1 65 396-480 3-67 (365)
139 PRK10266 curved DNA-binding pr 98.7 1.3E-08 2.9E-13 105.6 6.9 63 396-480 4-66 (306)
140 PRK02603 photosystem I assembl 98.7 3.6E-07 7.8E-12 86.7 16.0 113 151-315 27-153 (172)
141 KOG0719 Molecular chaperone (D 98.7 1.9E-08 4E-13 96.6 6.9 70 394-482 12-81 (264)
142 TIGR02349 DnaJ_bact chaperone 98.7 1.5E-08 3.3E-13 107.4 6.8 62 397-480 1-62 (354)
143 PRK14300 chaperone protein Dna 98.7 1.6E-08 3.4E-13 107.8 6.7 63 396-480 3-65 (372)
144 PRK14292 chaperone protein Dna 98.7 1.9E-08 4.2E-13 107.2 7.2 64 396-481 2-65 (371)
145 KOG0495 HAT repeat protein [RN 98.7 7.4E-06 1.6E-10 89.3 26.5 219 40-345 564-782 (913)
146 KOG0543 FKBP-type peptidyl-pro 98.7 3.2E-07 6.9E-12 95.6 15.6 144 162-345 211-355 (397)
147 COG4783 Putative Zn-dependent 98.7 7.4E-07 1.6E-11 94.6 18.5 130 159-343 306-435 (484)
148 PRK14289 chaperone protein Dna 98.7 2.8E-08 6.1E-13 106.5 7.7 65 395-480 4-68 (386)
149 PTZ00341 Ring-infected erythro 98.7 2.9E-08 6.3E-13 112.5 7.6 66 394-481 571-636 (1136)
150 KOG1129 TPR repeat-containing 98.7 3.7E-08 8E-13 99.3 7.5 186 20-325 287-472 (478)
151 PF14938 SNAP: Soluble NSF att 98.7 9.3E-07 2E-11 90.9 18.1 206 22-345 2-225 (282)
152 KOG1128 Uncharacterized conser 98.7 3.8E-07 8.1E-12 100.4 15.7 91 250-345 526-616 (777)
153 PRK14293 chaperone protein Dna 98.7 2.9E-08 6.3E-13 105.9 6.7 63 396-480 3-65 (374)
154 PF14938 SNAP: Soluble NSF att 98.7 8.3E-07 1.8E-11 91.2 17.1 221 19-345 30-266 (282)
155 KOG4162 Predicted calmodulin-b 98.7 3.7E-06 8.1E-11 93.2 22.8 92 249-345 656-749 (799)
156 PF13432 TPR_16: Tetratricopep 98.7 1.2E-07 2.5E-12 74.7 8.2 62 250-316 4-65 (65)
157 COG5010 TadD Flp pilus assembl 98.6 6.6E-07 1.4E-11 88.3 14.8 91 250-345 107-197 (257)
158 TIGR02795 tol_pal_ybgF tol-pal 98.6 7.3E-07 1.6E-11 77.9 13.9 110 161-320 4-114 (119)
159 KOG0715 Molecular chaperone (D 98.6 5.5E-08 1.2E-12 99.6 7.0 68 395-484 42-109 (288)
160 PLN03081 pentatricopeptide (PP 98.6 2.5E-06 5.4E-11 98.7 21.4 232 38-362 337-569 (697)
161 KOG0721 Molecular chaperone (D 98.6 7.3E-08 1.6E-12 91.9 7.0 68 394-482 97-164 (230)
162 PF13525 YfiO: Outer membrane 98.6 3.6E-06 7.8E-11 82.2 18.9 176 22-299 4-195 (203)
163 COG3071 HemY Uncharacterized e 98.6 1.8E-05 4E-10 82.2 24.6 235 22-345 152-390 (400)
164 KOG1308 Hsp70-interacting prot 98.6 3.5E-08 7.5E-13 100.3 4.3 111 230-345 101-211 (377)
165 PTZ00100 DnaJ chaperone protei 98.6 9.1E-08 2E-12 83.7 6.2 53 394-470 63-115 (116)
166 KOG3060 Uncharacterized conser 98.6 8.4E-06 1.8E-10 80.2 20.3 169 38-326 64-235 (289)
167 cd00189 TPR Tetratricopeptide 98.6 7.1E-07 1.5E-11 72.3 11.2 99 161-314 2-100 (100)
168 PRK15331 chaperone protein Sic 98.6 4.7E-07 1E-11 84.2 11.0 100 230-344 34-133 (165)
169 PF12895 Apc3: Anaphase-promot 98.6 1.3E-07 2.8E-12 78.7 6.3 47 39-85 2-50 (84)
170 PF13432 TPR_16: Tetratricopep 98.6 3E-07 6.5E-12 72.4 8.0 60 286-345 1-60 (65)
171 PRK14720 transcript cleavage f 98.5 1.5E-06 3.3E-11 100.4 16.7 157 52-346 23-179 (906)
172 PF09976 TPR_21: Tetratricopep 98.5 3.7E-06 7.9E-11 77.5 16.3 91 250-343 55-145 (145)
173 PRK05014 hscB co-chaperone Hsc 98.5 2E-07 4.3E-12 88.4 7.7 67 397-479 2-70 (171)
174 COG2956 Predicted N-acetylgluc 98.5 3E-05 6.5E-10 78.7 23.4 191 39-344 120-310 (389)
175 CHL00033 ycf3 photosystem I as 98.5 2.9E-06 6.2E-11 80.1 15.6 120 157-332 33-167 (168)
176 KOG0495 HAT repeat protein [RN 98.5 2.3E-05 5.1E-10 85.5 24.0 63 24-89 517-579 (913)
177 KOG1128 Uncharacterized conser 98.5 8.8E-07 1.9E-11 97.6 12.9 91 250-345 492-582 (777)
178 PRK09430 djlA Dna-J like membr 98.5 1.7E-07 3.8E-12 95.1 7.0 64 394-470 198-261 (267)
179 PLN03077 Protein ECB2; Provisi 98.5 8.3E-06 1.8E-10 96.6 22.2 197 38-362 536-732 (857)
180 KOG1156 N-terminal acetyltrans 98.5 2.6E-05 5.7E-10 85.2 23.5 212 28-345 12-248 (700)
181 PF13525 YfiO: Outer membrane 98.5 4.3E-06 9.3E-11 81.7 15.9 168 248-469 10-191 (203)
182 PF12569 NARP1: NMDA receptor- 98.5 2.9E-05 6.2E-10 86.0 23.9 263 25-348 6-337 (517)
183 KOG1127 TPR repeat-containing 98.5 5E-06 1.1E-10 94.2 17.9 189 39-345 471-659 (1238)
184 PLN03081 pentatricopeptide (PP 98.5 2.1E-05 4.5E-10 91.0 24.0 46 38-86 271-316 (697)
185 PHA03102 Small T antigen; Revi 98.5 1.9E-07 4.2E-12 86.1 5.7 52 396-471 5-58 (153)
186 COG4783 Putative Zn-dependent 98.5 1.4E-05 3E-10 85.1 19.9 47 39-85 319-365 (484)
187 PRK10803 tol-pal system protei 98.5 2.3E-06 4.9E-11 86.9 13.5 95 250-346 149-247 (263)
188 PLN03218 maturation of RBCL 1; 98.5 4.7E-05 1E-09 91.1 26.7 224 38-345 554-783 (1060)
189 PRK01356 hscB co-chaperone Hsc 98.5 4E-07 8.8E-12 85.8 7.4 66 396-479 2-69 (166)
190 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 7E-07 1.5E-11 95.0 9.9 69 278-346 71-142 (453)
191 PRK10153 DNA-binding transcrip 98.4 4.9E-06 1.1E-10 92.4 17.0 145 155-345 335-482 (517)
192 KOG4234 TPR repeat-containing 98.4 2.8E-06 6.1E-11 80.7 12.7 115 162-326 98-212 (271)
193 PLN03218 maturation of RBCL 1; 98.4 4.9E-05 1.1E-09 90.9 26.4 225 38-345 519-748 (1060)
194 PRK04841 transcriptional regul 98.4 2.5E-05 5.4E-10 92.9 23.7 142 161-346 493-642 (903)
195 PF04733 Coatomer_E: Coatomer 98.4 4.2E-06 9.1E-11 86.3 14.9 130 161-345 133-265 (290)
196 KOG1130 Predicted G-alpha GTPa 98.4 1.9E-06 4.1E-11 89.4 12.0 141 161-345 197-344 (639)
197 KOG0722 Molecular chaperone (D 98.4 1.2E-07 2.7E-12 91.9 3.2 57 393-470 30-86 (329)
198 PF14559 TPR_19: Tetratricopep 98.4 7.2E-07 1.6E-11 70.6 7.2 68 253-325 1-68 (68)
199 TIGR03835 termin_org_DnaJ term 98.4 4.4E-07 9.6E-12 100.9 7.6 63 396-480 2-64 (871)
200 COG2214 CbpA DnaJ-class molecu 98.4 5.3E-07 1.1E-11 88.2 7.5 67 395-481 5-71 (237)
201 PF13424 TPR_12: Tetratricopep 98.4 5.6E-07 1.2E-11 73.5 6.3 68 279-346 2-76 (78)
202 PF13371 TPR_9: Tetratricopept 98.4 1.5E-06 3.3E-11 69.8 8.8 70 250-324 2-71 (73)
203 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00023 5E-09 66.2 24.9 127 166-345 136-265 (291)
204 PF09976 TPR_21: Tetratricopep 98.4 5.9E-06 1.3E-10 76.1 13.6 120 38-270 23-145 (145)
205 PRK10153 DNA-binding transcrip 98.4 8.9E-06 1.9E-10 90.3 17.4 63 250-318 427-489 (517)
206 PRK10866 outer membrane biogen 98.4 1.4E-05 3E-10 80.4 17.2 149 250-428 39-208 (243)
207 PRK04841 transcriptional regul 98.4 4.8E-05 1E-09 90.4 23.8 206 38-345 464-720 (903)
208 PRK11906 transcriptional regul 98.4 2.8E-05 6.1E-10 83.1 19.3 88 250-342 345-433 (458)
209 PRK03578 hscB co-chaperone Hsc 98.4 1.2E-06 2.7E-11 83.2 8.2 70 394-479 4-75 (176)
210 KOG0720 Molecular chaperone (D 98.4 7.7E-07 1.7E-11 93.4 7.2 69 394-484 233-301 (490)
211 PRK00294 hscB co-chaperone Hsc 98.4 1.2E-06 2.7E-11 82.9 8.0 71 394-480 2-74 (173)
212 KOG1127 TPR repeat-containing 98.3 7.6E-06 1.6E-10 92.8 14.6 194 40-351 506-706 (1238)
213 COG4235 Cytochrome c biogenesi 98.3 1.4E-05 3E-10 80.9 15.1 91 250-345 163-256 (287)
214 KOG3785 Uncharacterized conser 98.3 9.6E-05 2.1E-09 75.7 20.8 207 38-339 34-242 (557)
215 PF12688 TPR_5: Tetratrico pep 98.3 1.5E-05 3.2E-10 71.1 13.1 94 248-343 6-102 (120)
216 KOG3060 Uncharacterized conser 98.3 0.0002 4.4E-09 70.7 21.2 135 156-345 48-183 (289)
217 PF13512 TPR_18: Tetratricopep 98.2 2.9E-05 6.3E-10 70.8 13.6 95 250-346 17-129 (142)
218 KOG1941 Acetylcholine receptor 98.2 4.8E-05 1E-09 78.1 16.5 141 161-345 124-275 (518)
219 COG1729 Uncharacterized protei 98.2 3.9E-05 8.3E-10 76.8 15.4 95 250-346 148-245 (262)
220 PRK10803 tol-pal system protei 98.2 4.2E-05 9.1E-10 77.7 15.6 109 161-321 144-256 (263)
221 COG4235 Cytochrome c biogenesi 98.2 6.7E-05 1.4E-09 76.0 16.7 127 40-282 136-265 (287)
222 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.3E-05 2.9E-10 85.5 12.1 58 250-312 82-142 (453)
223 PRK11906 transcriptional regul 98.2 3.5E-05 7.6E-10 82.4 15.2 145 158-345 252-401 (458)
224 PF13371 TPR_9: Tetratricopept 98.2 4.8E-06 1E-10 66.9 6.8 57 289-345 2-58 (73)
225 KOG2376 Signal recognition par 98.2 8.2E-05 1.8E-09 80.7 17.8 202 19-316 42-258 (652)
226 PF04733 Coatomer_E: Coatomer 98.1 0.00011 2.4E-09 75.7 17.1 213 29-343 7-228 (290)
227 PRK15331 chaperone protein Sic 98.1 7E-05 1.5E-09 69.8 14.0 101 19-187 33-133 (165)
228 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.5E-05 1.6E-09 79.9 15.6 88 250-342 207-294 (395)
229 KOG1156 N-terminal acetyltrans 98.1 7.4E-05 1.6E-09 81.8 15.5 130 162-346 44-173 (700)
230 COG5407 SEC63 Preprotein trans 98.1 5.4E-06 1.2E-10 86.6 6.2 63 394-471 96-158 (610)
231 PHA02624 large T antigen; Prov 98.1 5.4E-06 1.2E-10 91.5 6.1 55 395-473 10-66 (647)
232 PLN03077 Protein ECB2; Provisi 98.0 0.00028 6E-09 83.7 20.7 47 38-87 335-381 (857)
233 PF13424 TPR_12: Tetratricopep 98.0 1E-05 2.2E-10 66.0 5.7 63 249-311 11-75 (78)
234 KOG4555 TPR repeat-containing 98.0 7.3E-05 1.6E-09 66.6 11.1 96 34-190 51-146 (175)
235 PF12688 TPR_5: Tetratrico pep 98.0 0.00017 3.6E-09 64.4 13.3 101 161-310 3-103 (120)
236 KOG1310 WD40 repeat protein [G 98.0 1.6E-05 3.4E-10 84.9 7.8 106 235-345 366-474 (758)
237 COG0457 NrfG FOG: TPR repeat [ 98.0 0.0028 6E-08 58.8 22.6 192 39-345 36-231 (291)
238 KOG0714 Molecular chaperone (D 98.0 7.2E-06 1.6E-10 83.9 5.1 68 395-482 2-69 (306)
239 COG4105 ComL DNA uptake lipopr 98.0 0.0031 6.7E-08 62.8 22.9 191 22-315 33-236 (254)
240 COG3071 HemY Uncharacterized e 97.9 0.0026 5.7E-08 66.5 22.9 257 14-345 74-357 (400)
241 PF14559 TPR_19: Tetratricopep 97.9 2.7E-05 5.8E-10 61.5 5.9 50 38-87 3-52 (68)
242 PF00515 TPR_1: Tetratricopept 97.8 3E-05 6.6E-10 52.6 4.5 34 282-315 1-34 (34)
243 PF13512 TPR_18: Tetratricopep 97.7 0.00065 1.4E-08 62.0 13.2 109 161-318 12-135 (142)
244 KOG3081 Vesicle coat complex C 97.7 0.0035 7.6E-08 62.5 18.8 246 28-345 13-270 (299)
245 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0012 2.7E-08 70.6 16.8 93 162-309 203-295 (395)
246 KOG4340 Uncharacterized conser 97.7 0.00043 9.4E-09 69.6 12.3 134 162-345 47-207 (459)
247 PF13428 TPR_14: Tetratricopep 97.7 7.7E-05 1.7E-09 54.1 5.0 43 283-325 2-44 (44)
248 KOG1941 Acetylcholine receptor 97.7 0.00061 1.3E-08 70.2 13.1 218 22-346 5-236 (518)
249 PF13431 TPR_17: Tetratricopep 97.7 4.4E-05 9.6E-10 52.3 3.4 32 305-336 2-33 (34)
250 COG4700 Uncharacterized protei 97.6 0.002 4.2E-08 61.1 14.6 95 248-346 94-190 (251)
251 PF03704 BTAD: Bacterial trans 97.6 0.0022 4.8E-08 58.7 15.1 103 244-346 7-126 (146)
252 KOG1150 Predicted molecular ch 97.6 0.00039 8.5E-09 65.6 9.9 62 394-474 51-112 (250)
253 KOG4642 Chaperone-dependent E3 97.6 0.00015 3.3E-09 70.9 7.4 94 28-189 15-108 (284)
254 KOG0545 Aryl-hydrocarbon recep 97.6 0.002 4.3E-08 63.4 14.8 124 161-321 180-303 (329)
255 PF12968 DUF3856: Domain of Un 97.6 0.0017 3.7E-08 57.0 12.7 99 248-346 14-130 (144)
256 PRK01773 hscB co-chaperone Hsc 97.6 0.00022 4.7E-09 67.7 7.7 69 396-480 2-72 (173)
257 COG4785 NlpI Lipoprotein NlpI, 97.6 0.00021 4.7E-09 68.9 7.3 93 247-344 69-161 (297)
258 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00077 1.7E-08 65.2 10.8 129 162-345 68-266 (297)
259 PF07719 TPR_2: Tetratricopept 97.5 0.00019 4.2E-09 48.4 4.9 34 282-315 1-34 (34)
260 KOG3785 Uncharacterized conser 97.5 0.0092 2E-07 61.6 18.5 257 38-345 69-345 (557)
261 PF06552 TOM20_plant: Plant sp 97.4 0.0011 2.5E-08 62.5 10.4 87 259-350 7-107 (186)
262 COG1729 Uncharacterized protei 97.4 0.0031 6.7E-08 63.3 14.0 114 162-324 144-257 (262)
263 PF13431 TPR_17: Tetratricopep 97.4 0.00013 2.8E-09 49.9 2.9 34 48-81 1-34 (34)
264 KOG0376 Serine-threonine phosp 97.4 0.00026 5.6E-09 75.6 6.0 96 26-189 7-102 (476)
265 KOG2796 Uncharacterized conser 97.4 0.0074 1.6E-07 60.1 15.4 135 162-345 180-315 (366)
266 TIGR00714 hscB Fe-S protein as 97.3 0.00048 1E-08 64.4 6.9 57 408-480 3-59 (157)
267 COG4105 ComL DNA uptake lipopr 97.3 0.02 4.3E-07 57.2 18.1 158 231-428 32-200 (254)
268 PF06552 TOM20_plant: Plant sp 97.3 0.0025 5.4E-08 60.3 11.1 47 42-88 7-56 (186)
269 KOG2796 Uncharacterized conser 97.3 0.011 2.4E-07 58.8 16.0 164 43-326 166-333 (366)
270 COG4700 Uncharacterized protei 97.3 0.014 3E-07 55.5 15.5 131 161-344 91-221 (251)
271 KOG0546 HSP90 co-chaperone CPR 97.3 0.00036 7.9E-09 71.8 5.3 107 239-345 218-338 (372)
272 KOG2053 Mitochondrial inherita 97.2 0.069 1.5E-06 61.2 23.4 48 38-85 21-68 (932)
273 KOG1070 rRNA processing protei 97.1 0.036 7.8E-07 66.0 20.3 226 40-345 1438-1663(1710)
274 COG5269 ZUO1 Ribosome-associat 97.1 0.00071 1.5E-08 66.7 5.0 61 395-474 42-105 (379)
275 KOG0568 Molecular chaperone (D 97.0 0.0025 5.3E-08 61.5 7.7 58 395-473 46-103 (342)
276 PF04184 ST7: ST7 protein; In 97.0 0.0068 1.5E-07 65.3 11.6 211 39-344 181-413 (539)
277 COG2976 Uncharacterized protei 96.9 0.016 3.4E-07 55.5 12.4 98 244-345 90-188 (207)
278 KOG1308 Hsp70-interacting prot 96.9 0.00071 1.5E-08 69.5 3.5 106 18-188 102-211 (377)
279 KOG2047 mRNA splicing factor [ 96.9 0.35 7.6E-06 53.8 23.7 274 41-345 153-454 (835)
280 KOG0551 Hsp90 co-chaperone CNS 96.9 0.015 3.3E-07 59.7 12.5 106 162-318 84-189 (390)
281 PF13181 TPR_8: Tetratricopept 96.8 0.0019 4.1E-08 43.5 4.0 33 283-315 2-34 (34)
282 PF15015 NYD-SP12_N: Spermatog 96.7 0.011 2.4E-07 62.2 10.4 98 249-346 182-292 (569)
283 KOG1586 Protein required for f 96.7 0.053 1.2E-06 53.3 14.2 181 252-479 82-270 (288)
284 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.0072 1.6E-07 45.7 6.3 43 283-325 2-44 (53)
285 KOG3617 WD40 and TPR repeat-co 96.6 0.19 4.2E-06 57.2 19.5 159 156-345 911-1109(1416)
286 KOG2047 mRNA splicing factor [ 96.5 1 2.2E-05 50.4 24.3 258 16-343 342-613 (835)
287 PF00515 TPR_1: Tetratricopept 96.5 0.0056 1.2E-07 41.2 4.6 30 316-345 1-30 (34)
288 PF02259 FAT: FAT domain; Int 96.5 0.38 8.3E-06 50.3 20.6 130 156-331 143-307 (352)
289 COG3898 Uncharacterized membra 96.4 1.7 3.6E-05 46.1 25.1 192 38-345 96-292 (531)
290 KOG1789 Endocytosis protein RM 96.4 0.0045 9.9E-08 71.0 5.6 66 383-471 1266-1337(2235)
291 KOG1585 Protein required for f 96.3 0.19 4E-06 49.9 15.4 136 165-345 77-219 (308)
292 KOG2471 TPR repeat-containing 96.3 0.048 1E-06 58.6 12.2 172 26-294 209-381 (696)
293 PF03704 BTAD: Bacterial trans 96.2 0.17 3.8E-06 46.1 14.6 112 164-310 11-124 (146)
294 KOG1915 Cell cycle control pro 96.2 2.4 5.2E-05 46.0 24.9 278 14-426 53-354 (677)
295 KOG3617 WD40 and TPR repeat-co 96.1 0.21 4.5E-06 56.9 16.7 139 161-347 860-998 (1416)
296 PF13428 TPR_14: Tetratricopep 96.1 0.011 2.5E-07 42.5 4.6 40 26-68 4-43 (44)
297 KOG4151 Myosin assembly protei 96.0 0.012 2.6E-07 66.5 6.8 104 238-342 48-153 (748)
298 COG3118 Thioredoxin domain-con 96.0 0.6 1.3E-05 47.7 18.0 61 22-85 133-193 (304)
299 KOG1586 Protein required for f 96.0 1.2 2.7E-05 44.0 19.2 136 166-345 80-224 (288)
300 KOG1915 Cell cycle control pro 96.0 0.97 2.1E-05 48.9 20.0 184 48-344 310-499 (677)
301 PF07719 TPR_2: Tetratricopept 95.9 0.017 3.7E-07 38.6 4.6 31 316-346 1-31 (34)
302 KOG0723 Molecular chaperone (D 95.9 0.014 3E-07 50.0 4.7 53 397-473 57-109 (112)
303 smart00028 TPR Tetratricopepti 95.8 0.013 2.8E-07 37.2 3.6 33 283-315 2-34 (34)
304 COG2976 Uncharacterized protei 95.8 0.15 3.1E-06 49.1 11.8 103 161-316 91-193 (207)
305 COG3898 Uncharacterized membra 95.7 2 4.2E-05 45.6 20.6 229 33-345 161-392 (531)
306 KOG2471 TPR repeat-containing 95.7 2.5 5.3E-05 46.0 21.8 136 162-343 512-682 (696)
307 PRK10941 hypothetical protein; 95.7 0.091 2E-06 53.6 10.9 66 280-345 179-244 (269)
308 PF10300 DUF3808: Protein of u 95.6 0.17 3.8E-06 55.8 13.5 96 248-345 272-376 (468)
309 PRK10941 hypothetical protein; 95.6 0.049 1.1E-06 55.5 8.4 75 18-97 175-249 (269)
310 PF13176 TPR_7: Tetratricopept 95.4 0.028 6.1E-07 38.7 4.3 28 318-345 1-28 (36)
311 COG2909 MalT ATP-dependent tra 95.4 1.8 4E-05 50.1 20.7 141 161-346 499-648 (894)
312 PF10300 DUF3808: Protein of u 95.4 0.36 7.8E-06 53.4 15.0 89 39-188 246-334 (468)
313 PF13174 TPR_6: Tetratricopept 95.3 0.026 5.7E-07 37.3 3.8 31 284-314 2-32 (33)
314 PF13181 TPR_8: Tetratricopept 95.2 0.038 8.2E-07 37.0 4.4 29 161-189 3-31 (34)
315 PF13176 TPR_7: Tetratricopept 95.2 0.031 6.7E-07 38.5 4.0 28 284-311 1-28 (36)
316 COG3118 Thioredoxin domain-con 95.1 0.36 7.9E-06 49.2 12.6 109 232-345 121-265 (304)
317 KOG3081 Vesicle coat complex C 94.8 2.6 5.7E-05 42.5 17.6 80 250-345 214-294 (299)
318 KOG1070 rRNA processing protei 94.8 6 0.00013 48.1 23.1 226 14-328 1449-1682(1710)
319 KOG4507 Uncharacterized conser 94.7 0.17 3.7E-06 55.6 9.5 142 139-336 195-337 (886)
320 KOG0431 Auxilin-like protein a 94.4 0.056 1.2E-06 59.1 5.3 57 399-468 391-447 (453)
321 KOG3824 Huntingtin interacting 94.4 0.16 3.5E-06 51.8 8.0 81 241-326 114-194 (472)
322 KOG2610 Uncharacterized conser 94.2 0.68 1.5E-05 48.0 12.2 92 250-342 144-235 (491)
323 PF09613 HrpB1_HrpK: Bacterial 94.2 1.3 2.7E-05 41.5 13.0 117 19-188 6-122 (160)
324 KOG1550 Extracellular protein 94.1 6.3 0.00014 44.6 21.2 182 41-345 227-426 (552)
325 PF04184 ST7: ST7 protein; In 94.1 1 2.2E-05 49.2 13.7 61 282-342 259-321 (539)
326 PF13174 TPR_6: Tetratricopept 93.9 0.058 1.3E-06 35.6 2.8 30 317-346 1-30 (33)
327 PF12968 DUF3856: Domain of Un 93.9 1.1 2.4E-05 39.7 11.1 96 38-189 21-130 (144)
328 PF04781 DUF627: Protein of un 93.8 0.31 6.8E-06 42.6 7.7 94 250-345 3-107 (111)
329 KOG4814 Uncharacterized conser 93.5 0.42 9.1E-06 53.2 9.8 100 246-345 357-457 (872)
330 PF13281 DUF4071: Domain of un 93.5 13 0.00027 39.9 22.6 128 163-341 145-284 (374)
331 KOG1585 Protein required for f 93.3 2.5 5.5E-05 42.2 14.0 140 162-345 34-179 (308)
332 KOG0985 Vesicle coat protein c 93.3 1.1 2.3E-05 52.5 12.9 83 250-345 1201-1308(1666)
333 KOG4507 Uncharacterized conser 93.1 0.18 3.9E-06 55.4 6.2 118 153-324 600-718 (886)
334 PF10579 Rapsyn_N: Rapsyn N-te 92.9 0.71 1.5E-05 37.8 7.9 64 246-311 9-72 (80)
335 PF14561 TPR_20: Tetratricopep 92.8 0.86 1.9E-05 38.5 8.8 77 262-343 7-85 (90)
336 PF04910 Tcf25: Transcriptiona 92.8 6.1 0.00013 42.1 17.4 185 51-321 31-232 (360)
337 TIGR02561 HrpB1_HrpK type III 92.8 1.9 4.1E-05 39.8 11.5 114 19-185 6-119 (153)
338 PF09986 DUF2225: Uncharacteri 92.8 0.58 1.3E-05 46.1 8.9 96 250-345 84-194 (214)
339 KOG2300 Uncharacterized conser 92.7 18 0.00039 39.6 20.3 203 38-346 287-515 (629)
340 PF13374 TPR_10: Tetratricopep 92.7 0.22 4.8E-06 34.5 4.4 29 318-346 4-32 (42)
341 PF05843 Suf: Suppressor of fo 92.6 2.9 6.3E-05 42.9 14.3 131 161-346 3-137 (280)
342 PF08631 SPO22: Meiosis protei 92.6 3.5 7.7E-05 42.2 14.9 134 169-345 3-150 (278)
343 KOG2053 Mitochondrial inherita 92.5 0.78 1.7E-05 53.0 10.4 87 254-345 20-106 (932)
344 PF12862 Apc5: Anaphase-promot 92.4 0.52 1.1E-05 39.9 7.0 60 252-311 7-70 (94)
345 KOG2610 Uncharacterized conser 92.0 3.7 8E-05 42.8 13.6 94 165-309 181-274 (491)
346 PF14853 Fis1_TPR_C: Fis1 C-te 92.0 0.95 2.1E-05 34.2 7.2 27 162-188 4-30 (53)
347 KOG1310 WD40 repeat protein [G 91.8 0.53 1.2E-05 51.3 7.8 107 19-190 370-476 (758)
348 PF10516 SHNi-TPR: SHNi-TPR; 91.7 0.33 7.2E-06 34.0 4.1 31 317-347 2-32 (38)
349 PF13281 DUF4071: Domain of un 91.5 10 0.00022 40.6 16.9 36 281-316 304-339 (374)
350 KOG3364 Membrane protein invol 91.1 0.79 1.7E-05 41.5 6.9 73 250-325 39-114 (149)
351 KOG1550 Extracellular protein 91.1 5.1 0.00011 45.3 15.2 87 250-345 295-393 (552)
352 PF10602 RPN7: 26S proteasome 91.0 3.8 8.2E-05 39.1 12.1 93 248-342 41-139 (177)
353 KOG3616 Selective LIM binding 90.9 9.9 0.00021 43.4 16.3 49 292-343 860-909 (1636)
354 smart00028 TPR Tetratricopepti 90.8 0.27 5.7E-06 30.7 2.9 29 317-345 2-30 (34)
355 COG0790 FOG: TPR repeat, SEL1 90.6 21 0.00046 36.3 21.5 77 259-345 171-266 (292)
356 PF09613 HrpB1_HrpK: Bacterial 90.5 3.9 8.5E-05 38.3 11.2 79 250-333 17-95 (160)
357 PF04910 Tcf25: Transcriptiona 90.5 27 0.00059 37.2 19.6 163 157-347 38-224 (360)
358 PF13374 TPR_10: Tetratricopep 90.3 0.66 1.4E-05 32.0 4.8 30 282-311 2-31 (42)
359 PF04781 DUF627: Protein of un 90.3 2.4 5.2E-05 37.1 9.0 95 165-312 2-108 (111)
360 PF14863 Alkyl_sulf_dimr: Alky 90.2 0.66 1.4E-05 42.6 5.8 53 24-79 71-123 (141)
361 KOG2041 WD40 repeat protein [G 90.2 4.1 8.8E-05 46.1 12.6 77 248-341 801-877 (1189)
362 PF07079 DUF1347: Protein of u 90.2 0.95 2.1E-05 48.7 7.6 63 18-85 458-520 (549)
363 COG4976 Predicted methyltransf 90.1 0.47 1E-05 46.7 4.9 61 252-317 4-64 (287)
364 COG2912 Uncharacterized conser 90.0 1.1 2.3E-05 45.5 7.5 65 281-345 180-244 (269)
365 KOG2300 Uncharacterized conser 89.9 21 0.00045 39.2 17.2 85 247-331 449-540 (629)
366 COG3629 DnrI DNA-binding trans 89.6 5.1 0.00011 41.1 12.2 80 259-345 137-216 (280)
367 COG4649 Uncharacterized protei 89.6 20 0.00042 34.3 15.4 119 160-329 95-213 (221)
368 PF14561 TPR_20: Tetratricopep 89.2 1.1 2.4E-05 37.8 6.0 45 300-344 6-50 (90)
369 PF12862 Apc5: Anaphase-promot 89.1 1.7 3.7E-05 36.7 7.2 57 290-346 6-71 (94)
370 KOG1463 26S proteasome regulat 88.9 4 8.8E-05 42.5 10.8 138 162-342 171-313 (411)
371 COG4976 Predicted methyltransf 88.8 0.5 1.1E-05 46.5 4.1 56 291-346 4-59 (287)
372 COG1076 DjlA DnaJ-domain-conta 88.7 0.46 1E-05 45.2 3.8 60 396-468 113-172 (174)
373 PF05843 Suf: Suppressor of fo 88.6 2.3 5E-05 43.6 9.1 89 252-345 10-99 (280)
374 KOG3824 Huntingtin interacting 88.5 1.1 2.4E-05 45.9 6.4 63 283-345 117-179 (472)
375 PF10579 Rapsyn_N: Rapsyn N-te 88.2 2.6 5.7E-05 34.5 7.2 61 22-85 5-68 (80)
376 KOG3807 Predicted membrane pro 88.2 21 0.00045 37.3 15.2 199 41-323 199-403 (556)
377 PF08424 NRDE-2: NRDE-2, neces 88.2 14 0.0003 38.7 14.8 147 17-189 13-184 (321)
378 PF09986 DUF2225: Uncharacteri 87.4 14 0.00029 36.5 13.3 69 256-324 138-208 (214)
379 PF10602 RPN7: 26S proteasome 87.3 9.1 0.0002 36.5 11.7 103 161-310 38-141 (177)
380 PF10516 SHNi-TPR: SHNi-TPR; 87.2 0.84 1.8E-05 32.0 3.3 30 283-312 2-31 (38)
381 PF04053 Coatomer_WDAD: Coatom 87.1 15 0.00032 40.5 14.6 75 250-342 354-428 (443)
382 PF07721 TPR_4: Tetratricopept 86.5 0.94 2E-05 28.6 3.0 24 160-183 2-25 (26)
383 COG2909 MalT ATP-dependent tra 85.5 41 0.00089 39.5 17.3 92 250-341 465-564 (894)
384 COG2912 Uncharacterized conser 85.4 2.2 4.8E-05 43.2 6.7 71 18-90 175-245 (269)
385 cd02681 MIT_calpain7_1 MIT: do 85.2 4.9 0.00011 32.8 7.4 62 320-388 10-71 (76)
386 KOG1839 Uncharacterized protei 83.9 19 0.0004 43.9 14.2 106 23-188 932-1044(1236)
387 PF10345 Cohesin_load: Cohesin 83.0 93 0.002 35.6 21.5 95 250-344 308-432 (608)
388 PF08631 SPO22: Meiosis protei 83.0 7.3 0.00016 39.9 9.5 85 253-337 3-105 (278)
389 TIGR02561 HrpB1_HrpK type III 82.9 15 0.00032 34.1 10.2 79 250-333 17-95 (153)
390 COG3947 Response regulator con 82.8 5.2 0.00011 41.0 7.9 64 282-345 279-342 (361)
391 COG0790 FOG: TPR repeat, SEL1 82.4 52 0.0011 33.3 15.7 90 250-345 116-220 (292)
392 PF04212 MIT: MIT (microtubule 82.0 8.3 0.00018 30.4 7.5 60 319-386 8-67 (69)
393 PF10345 Cohesin_load: Cohesin 81.7 1E+02 0.0023 35.2 20.9 201 42-346 37-255 (608)
394 PF07079 DUF1347: Protein of u 80.7 23 0.00049 38.6 12.1 53 289-342 469-521 (549)
395 PF07721 TPR_4: Tetratricopept 80.7 1.8 4E-05 27.3 2.6 22 318-339 3-24 (26)
396 COG4649 Uncharacterized protei 80.6 55 0.0012 31.3 14.1 95 246-342 97-193 (221)
397 KOG0890 Protein kinase of the 80.5 1.4E+02 0.0031 39.0 20.4 86 259-346 1645-1732(2382)
398 KOG0276 Vesicle coat complex C 77.9 17 0.00038 40.7 10.4 27 162-188 669-695 (794)
399 KOG1839 Uncharacterized protei 77.3 31 0.00068 42.0 13.2 107 228-346 970-1087(1236)
400 KOG3616 Selective LIM binding 77.0 51 0.0011 38.0 13.8 84 250-347 772-861 (1636)
401 PF15015 NYD-SP12_N: Spermatog 76.8 22 0.00049 38.3 10.5 109 165-310 182-290 (569)
402 COG3629 DnrI DNA-binding trans 76.4 10 0.00023 38.8 7.9 75 13-87 138-214 (280)
403 PF07720 TPR_3: Tetratricopept 76.1 7.8 0.00017 26.7 4.8 31 284-314 3-35 (36)
404 cd02683 MIT_1 MIT: domain cont 76.0 8.2 0.00018 31.5 5.8 63 319-389 9-71 (77)
405 KOG1538 Uncharacterized conser 75.8 94 0.002 35.5 15.3 77 250-342 754-830 (1081)
406 KOG1464 COP9 signalosome, subu 75.7 1E+02 0.0022 31.6 14.7 52 39-90 40-95 (440)
407 cd02682 MIT_AAA_Arch MIT: doma 75.1 15 0.00033 29.9 7.0 63 318-388 8-70 (75)
408 KOG3364 Membrane protein invol 74.7 12 0.00025 34.2 6.8 70 25-97 34-105 (149)
409 cd02682 MIT_AAA_Arch MIT: doma 74.6 18 0.0004 29.4 7.3 25 248-272 11-35 (75)
410 COG3914 Spy Predicted O-linked 72.3 72 0.0016 35.9 13.4 92 250-346 74-172 (620)
411 PF09670 Cas_Cas02710: CRISPR- 72.3 1.1E+02 0.0024 32.8 15.0 136 162-346 134-271 (379)
412 PF14863 Alkyl_sulf_dimr: Alky 71.8 10 0.00022 34.8 6.0 51 283-333 71-121 (141)
413 PF10373 EST1_DNA_bind: Est1 D 71.0 13 0.00029 37.2 7.4 62 262-328 1-62 (278)
414 cd02678 MIT_VPS4 MIT: domain c 70.7 17 0.00038 29.3 6.5 62 319-388 9-70 (75)
415 PF04053 Coatomer_WDAD: Coatom 69.8 76 0.0016 34.9 13.2 28 161-188 349-376 (443)
416 COG4941 Predicted RNA polymera 69.5 94 0.002 32.8 12.7 85 255-345 308-394 (415)
417 KOG0292 Vesicle coat complex C 69.4 1.2E+02 0.0026 35.9 14.6 195 66-320 912-1122(1202)
418 KOG0546 HSP90 co-chaperone CPR 69.2 8.8 0.00019 40.3 5.4 75 250-329 282-356 (372)
419 PF04190 DUF410: Protein of un 66.3 72 0.0016 32.3 11.5 91 250-341 17-115 (260)
420 KOG0530 Protein farnesyltransf 66.1 78 0.0017 32.3 11.1 87 252-343 52-140 (318)
421 PRK13184 pknD serine/threonine 65.8 28 0.00061 41.8 9.4 94 250-346 482-582 (932)
422 PF11207 DUF2989: Protein of u 65.7 42 0.0009 32.7 9.0 73 259-336 122-198 (203)
423 PF10373 EST1_DNA_bind: Est1 D 64.6 12 0.00026 37.7 5.4 43 301-343 1-43 (278)
424 PF10255 Paf67: RNA polymerase 63.8 11 0.00024 40.7 5.1 60 285-345 125-193 (404)
425 COG5159 RPN6 26S proteasome re 63.7 1.9E+02 0.004 30.0 13.9 134 162-342 168-311 (421)
426 KOG4151 Myosin assembly protei 63.7 16 0.00035 42.0 6.6 82 250-336 100-181 (748)
427 cd02680 MIT_calpain7_2 MIT: do 63.6 33 0.00071 27.9 6.7 20 327-346 17-36 (75)
428 smart00745 MIT Microtubule Int 63.5 33 0.00071 27.5 6.8 59 320-386 12-70 (77)
429 TIGR02710 CRISPR-associated pr 63.5 95 0.0021 33.4 12.0 99 249-347 136-277 (380)
430 KOG3783 Uncharacterized conser 63.3 2.5E+02 0.0055 31.4 20.7 63 283-345 450-520 (546)
431 PRK13184 pknD serine/threonine 62.9 25 0.00054 42.2 8.3 64 257-326 533-596 (932)
432 PF12854 PPR_1: PPR repeat 62.6 15 0.00033 24.7 3.9 25 160-184 8-32 (34)
433 cd02684 MIT_2 MIT: domain cont 62.6 26 0.00057 28.4 6.0 61 320-388 10-70 (75)
434 cd02656 MIT MIT: domain contai 62.5 38 0.00082 27.1 7.0 61 320-388 10-70 (75)
435 KOG0686 COP9 signalosome, subu 62.4 32 0.0007 36.9 8.1 93 248-342 155-255 (466)
436 PF04212 MIT: MIT (microtubule 62.4 19 0.00042 28.3 5.2 28 245-272 7-34 (69)
437 cd02679 MIT_spastin MIT: domai 62.1 45 0.00098 27.4 7.3 35 297-346 4-38 (79)
438 COG3914 Spy Predicted O-linked 61.9 1.2E+02 0.0026 34.2 12.6 79 250-333 108-193 (620)
439 PF03656 Pam16: Pam16; InterP 61.6 20 0.00044 32.3 5.6 37 397-433 59-95 (127)
440 TIGR03504 FimV_Cterm FimV C-te 60.2 14 0.0003 26.8 3.5 25 163-187 3-27 (44)
441 cd02677 MIT_SNX15 MIT: domain 60.1 23 0.00051 28.7 5.3 24 327-350 17-40 (75)
442 PF11817 Foie-gras_1: Foie gra 59.8 32 0.00069 34.5 7.4 61 248-308 183-244 (247)
443 TIGR03504 FimV_Cterm FimV C-te 59.4 15 0.00033 26.6 3.6 25 319-343 2-26 (44)
444 PF11207 DUF2989: Protein of u 59.3 37 0.0008 33.1 7.3 50 252-302 149-198 (203)
445 cd02683 MIT_1 MIT: domain cont 58.9 20 0.00044 29.2 4.7 24 249-272 12-35 (77)
446 PF09670 Cas_Cas02710: CRISPR- 58.4 1.7E+02 0.0036 31.5 13.1 72 13-87 119-196 (379)
447 KOG0985 Vesicle coat protein c 57.6 3.2E+02 0.0069 33.3 15.3 28 315-342 1219-1246(1666)
448 PF02259 FAT: FAT domain; Int 57.5 2.3E+02 0.0051 29.1 23.8 97 248-345 151-287 (352)
449 PF12739 TRAPPC-Trs85: ER-Golg 56.9 2.3E+02 0.005 30.7 14.0 83 250-346 307-400 (414)
450 smart00386 HAT HAT (Half-A-TPR 56.4 23 0.0005 22.3 4.0 30 40-69 1-30 (33)
451 PF10255 Paf67: RNA polymerase 55.8 12 0.00025 40.5 3.7 60 250-310 129-192 (404)
452 cd02681 MIT_calpain7_1 MIT: do 55.3 25 0.00055 28.7 4.7 27 246-272 9-35 (76)
453 PRK15180 Vi polysaccharide bio 55.1 57 0.0012 35.9 8.5 91 250-345 330-420 (831)
454 KOG0276 Vesicle coat complex C 52.5 1.7E+02 0.0036 33.3 11.7 42 231-272 654-695 (794)
455 COG1076 DjlA DnaJ-domain-conta 52.5 20 0.00043 34.0 4.3 47 413-474 20-66 (174)
456 TIGR03362 VI_chp_7 type VI sec 52.3 2.9E+02 0.0064 28.7 17.0 58 26-87 102-159 (301)
457 PHA02537 M terminase endonucle 52.2 1.3E+02 0.0029 29.9 10.2 20 169-188 93-112 (230)
458 PF10938 YfdX: YfdX protein; 51.1 1.7E+02 0.0038 27.1 10.3 135 162-310 5-145 (155)
459 KOG4814 Uncharacterized conser 51.1 36 0.00079 38.6 6.5 64 282-345 354-423 (872)
460 KOG2041 WD40 repeat protein [G 50.8 4.6E+02 0.01 30.6 16.0 136 161-342 798-936 (1189)
461 PF08424 NRDE-2: NRDE-2, neces 49.0 3.3E+02 0.0072 28.3 16.7 29 47-75 6-34 (321)
462 KOG0530 Protein farnesyltransf 48.6 3.2E+02 0.0069 28.0 16.4 82 259-345 94-176 (318)
463 PF11817 Foie-gras_1: Foie gra 47.9 94 0.002 31.1 8.7 61 280-340 176-242 (247)
464 COG4455 ImpE Protein of avirul 47.4 1.2E+02 0.0026 30.2 8.6 64 250-318 8-71 (273)
465 cd02678 MIT_VPS4 MIT: domain c 47.0 44 0.00094 26.9 4.9 27 246-272 9-35 (75)
466 cd02680 MIT_calpain7_2 MIT: do 46.9 36 0.00078 27.7 4.3 23 250-272 13-35 (75)
467 smart00745 MIT Microtubule Int 46.5 45 0.00098 26.7 5.0 25 248-272 13-37 (77)
468 KOG1464 COP9 signalosome, subu 46.2 75 0.0016 32.5 7.3 57 253-310 37-93 (440)
469 KOG4563 Cell cycle-regulated h 44.4 37 0.00081 35.9 5.1 63 242-304 40-105 (400)
470 cd02656 MIT MIT: domain contai 43.9 52 0.0011 26.3 5.0 25 248-272 11-35 (75)
471 cd02684 MIT_2 MIT: domain cont 43.8 50 0.0011 26.8 4.8 26 247-272 10-35 (75)
472 KOG3192 Mitochondrial J-type c 43.5 46 0.001 30.9 4.9 67 394-476 6-74 (168)
473 PF07219 HemY_N: HemY protein 41.8 81 0.0018 27.3 6.2 59 14-75 49-108 (108)
474 smart00386 HAT HAT (Half-A-TPR 41.6 64 0.0014 20.1 4.3 28 297-324 2-29 (33)
475 COG5159 RPN6 26S proteasome re 41.3 4.3E+02 0.0094 27.5 17.4 96 250-345 132-235 (421)
476 PF07720 TPR_3: Tetratricopept 41.1 74 0.0016 21.9 4.6 29 317-345 2-32 (36)
477 KOG2396 HAT (Half-A-TPR) repea 40.4 1.6E+02 0.0035 32.7 9.2 57 259-320 121-178 (568)
478 KOG0890 Protein kinase of the 40.2 2.2E+02 0.0047 37.5 11.4 119 153-324 1664-1797(2382)
479 PRK15180 Vi polysaccharide bio 39.5 2.3E+02 0.0049 31.4 10.0 86 252-342 298-383 (831)
480 PF01239 PPTA: Protein prenylt 38.6 74 0.0016 20.6 4.2 29 301-329 2-30 (31)
481 KOG4563 Cell cycle-regulated h 38.4 53 0.0011 34.8 5.1 61 18-81 36-104 (400)
482 PF07219 HemY_N: HemY protein 37.0 2.7E+02 0.0058 24.0 8.7 57 236-297 52-108 (108)
483 COG2015 Alkyl sulfatase and re 36.4 65 0.0014 35.5 5.5 60 24-86 453-512 (655)
484 PF09797 NatB_MDM20: N-acetylt 36.2 1.6E+02 0.0034 31.3 8.6 68 18-85 170-242 (365)
485 KOG0292 Vesicle coat complex C 35.1 5.5E+02 0.012 30.8 12.7 105 241-345 989-1113(1202)
486 PF01535 PPR: PPR repeat; Int 34.6 63 0.0014 20.1 3.4 26 162-187 3-28 (31)
487 COG5107 RNA14 Pre-mRNA 3'-end 34.6 6.8E+02 0.015 27.8 17.6 208 38-345 314-524 (660)
488 PF15469 Sec5: Exocyst complex 34.6 4E+02 0.0086 25.1 10.5 41 232-272 75-115 (182)
489 PF15297 CKAP2_C: Cytoskeleton 34.5 1.2E+02 0.0025 32.2 6.9 63 22-87 101-167 (353)
490 PF05053 Menin: Menin; InterP 34.2 2.9E+02 0.0062 31.3 10.0 34 155-188 314-347 (618)
491 COG4455 ImpE Protein of avirul 33.2 94 0.002 30.9 5.5 56 290-345 9-64 (273)
492 PF12854 PPR_1: PPR repeat 33.1 87 0.0019 20.9 3.9 27 281-307 6-32 (34)
493 KOG4521 Nuclear pore complex, 32.8 4E+02 0.0086 32.9 11.3 144 163-334 924-1072(1480)
494 COG5191 Uncharacterized conser 32.7 75 0.0016 33.1 5.0 64 253-321 117-181 (435)
495 cd02677 MIT_SNX15 MIT: domain 32.4 87 0.0019 25.4 4.5 23 250-272 13-35 (75)
496 TIGR00756 PPR pentatricopeptid 31.8 92 0.002 19.6 3.9 26 162-187 3-28 (35)
497 KOG1538 Uncharacterized conser 31.6 1.3E+02 0.0029 34.3 7.0 51 250-308 780-830 (1081)
498 KOG0529 Protein geranylgeranyl 31.5 4.4E+02 0.0095 28.6 10.6 86 252-342 84-175 (421)
499 KOG2561 Adaptor protein NUB1, 31.5 1.6E+02 0.0035 32.2 7.3 114 244-361 164-308 (568)
500 PF08626 TRAPPC9-Trs120: Trans 31.1 8.8E+02 0.019 30.3 14.9 90 257-346 359-475 (1185)
No 1
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-38 Score=317.66 Aligned_cols=359 Identities=21% Similarity=0.260 Sum_probs=275.0
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
..++.-..+-..+ .+.+|..||..|+.||++.|+++.+|.+||.+|++++||++|.-+.++.+ ++.+..+-...
T Consensus 48 ~Ae~~k~~gn~~y---k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~---r~kd~~~k~~~ 121 (486)
T KOG0550|consen 48 QAEEAKEEGNAFY---KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV---RLKDGFSKGQL 121 (486)
T ss_pred HHHHHHhhcchHH---HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhe---ecCCCcccccc
Confidence 4555666666666 57889999999999999999999999999999999999999999998844 44443332221
Q ss_pred CCc----hhhHhHHHHHhhhcCCC-----CCCC----CCCCCCCCcccccchHHHHHHHHhhh------------ccccc
Q 008039 102 SDS----SSQQLSRERVKLLHSGG-----DSSD----DSLGRDPSFKCFSVSDLKKKVMAGLC------------RNCEK 156 (580)
Q Consensus 102 ~~~----~~~~~~~~~~~ll~~~~-----~~~~----~~~~~~~~~~~~~~~~~~k~~~~~l~------------~~~~~ 156 (580)
-.. +.+.+ .+....+..-. ..+. ......+.-.||...+|+-.++.-+. ...+.
T Consensus 122 r~~~c~~a~~~~-i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~ 200 (486)
T KOG0550|consen 122 REGQCHLALSDL-IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA 200 (486)
T ss_pred chhhhhhhhHHH-HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc
Confidence 111 00111 11111111000 0000 00001111234444455444443221 12233
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008039 157 EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQL 236 (580)
Q Consensus 157 ~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~l 236 (580)
....+.++.|.+++..++.+.|+.+|++++++ +|++......
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--------------------------------------dpdh~~sk~~ 242 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRL--------------------------------------DPDHQKSKSA 242 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhcc--------------------------------------ChhhhhHHhH
Confidence 44567778888999999999999999888765 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
...++.+...++.||.+|+.|+|..|.++|+.+|.+ +|.+...++.+|.|||.++.++|+..+||.+|+.|+.|||.++
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 999999999999999999999999999999999997 6877888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCcc
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNV 396 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~ 396 (580)
+||.++|.|+..+++|++|++||++++++. + .-++.+.++++. ..|++ +.++
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~-------~------------s~e~r~~l~~A~---~aLkk------SkRk 373 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLE-------K------------DCEIRRTLREAQ---LALKK------SKRK 373 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------c------------ccchHHHHHHHH---HHHHH------hhhh
Confidence 999999999999999999999999998872 1 022333334433 34454 5689
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+||++||+.+.+++.+|+++||+++|.||||++.+. ++.++.+|+.|.+||. +++|++
T Consensus 374 d~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-------------------q~eaE~kFkevgeAy~-il~d~~ 431 (486)
T KOG0550|consen 374 DWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-------------------QKEAEAKFKEVGEAYT-ILSDPM 431 (486)
T ss_pred hHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-------------------hHHHHHHHHHHHHHHH-HhcCHH
Confidence 999999999999999999999999999999998773 4899999999999999 788887
No 2
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=100.00 E-value=1.1e-33 Score=281.18 Aligned_cols=302 Identities=17% Similarity=0.231 Sum_probs=256.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
++.+.....++.....||+..|++.++..|++.|+++..+..||.||...|....||.+++.+- ++
T Consensus 153 ~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as---kL----------- 218 (504)
T KOG0624|consen 153 QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS---KL----------- 218 (504)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH---hc-----------
Confidence 3333444444444467999999999999999999999999999999999999999999888743 11
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
+.+ ....+|.+++.++..|+.+.++...+
T Consensus 219 --------------s~D-------------------------------------nTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 219 --------------SQD-------------------------------------NTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred --------------ccc-------------------------------------chHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 111 11256778999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAI 263 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi 263 (580)
.|+++ |||+..|..+++.++++.+..+.+......++|.+++
T Consensus 248 ECLKl--------------------------------------dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 248 ECLKL--------------------------------------DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred HHHcc--------------------------------------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99976 5999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 264 RHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 264 ~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
+.+.+.++. +|...+.....+-.+|.|+..-|++.+||..|+++|.++|+++.++..||.+|+.-.+||+||.+|++|.
T Consensus 290 e~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 290 EAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999995 5655566677778889999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhcccCCCCHHHHHHHHHHHHhh
Q 008039 344 LLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLR 423 (580)
Q Consensus 344 ~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~ 423 (580)
++.+ . | .+.++...+++.++. ..++.|||+||||.++++..||-+|||++|++
T Consensus 369 e~n~---------s------n-------~~~reGle~Akrlkk-----qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqk 421 (504)
T KOG0624|consen 369 ELNE---------S------N-------TRAREGLERAKRLKK-----QSGKRDYYKILGVKRNASKQEITKAYRKLAQK 421 (504)
T ss_pred hcCc---------c------c-------HHHHHHHHHHHHHHH-----HhccchHHHHhhhcccccHHHHHHHHHHHHHh
Confidence 7721 1 1 223455666655543 26789999999999999999999999999999
Q ss_pred cCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 424 HKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 424 ~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
||||...+ +++++.|+.+|-+|..|.+| ++|+-
T Consensus 422 WHPDNFqd-----------------EeEKKkAEKKFIDIAAAKEV-Lsd~E 454 (504)
T KOG0624|consen 422 WHPDNFQD-----------------EEEKKKAEKKFIDIAAAKEV-LSDPE 454 (504)
T ss_pred cCCccccC-----------------HHHHHHHHHhhhhHHHHHHh-hcCHH
Confidence 99998765 34579999999999999995 55553
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=7.2e-20 Score=194.10 Aligned_cols=347 Identities=16% Similarity=0.130 Sum_probs=203.5
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
+.+++-.+-|-..|..+- +.|++..|+.+|..+|+++|.+..+|.++|.+|...|+.+.|..+|..+| +++|+.
T Consensus 110 r~~~q~ae~ysn~aN~~k---erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l 183 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILK---ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDL 183 (966)
T ss_pred hccchHHHHHHHHHHHHH---HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcch
Confidence 355655555555555553 56778888888888888888888888888888888888888888877744 455533
Q ss_pred CCCCCCCchhhH----h-----HHHHHhhhcCCCCCCCCCCCCCCCcccccc--hHHHHHHH-------------Hhhhc
Q 008039 97 SGSVSSDSSSQQ----L-----SRERVKLLHSGGDSSDDSLGRDPSFKCFSV--SDLKKKVM-------------AGLCR 152 (580)
Q Consensus 97 ~~~~~~~~~~~~----~-----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~-------------~~l~~ 152 (580)
.-..+...-..+ + ....+-...| ||.| ++|..-+. ..+
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp----------------~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-- 245 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIETQP----------------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-- 245 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhhCC----------------ceeeeehhcchHHhhcchHHHHHHHHHHhh--
Confidence 332222121100 0 0111111111 1111 11111111 111
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCC-------CCCCCCCCCCCCC
Q 008039 153 NCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPV-------SNNHQTPPATPPR 225 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~-------~~~~~~~~~~~~~ 225 (580)
.-++....+|++||.+|..++.++.|+..|.+++.+.|. .....-+++. -+-++......+.
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-----------~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-----------HAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-----------chhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 112233457999999999999999999999999987432 0001111110 0000111111223
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 008039 226 TMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADC 305 (580)
Q Consensus 226 ~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~ 305 (580)
..|....+...+ ||++-..|+..+|+.+|.++|.+ .|..+...+|+|.+|..+|.+++|+..|
T Consensus 315 ~~P~F~~Ay~Nl------------anALkd~G~V~ea~~cYnkaL~l-----~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 315 LQPNFPDAYNNL------------ANALKDKGSVTEAVDCYNKALRL-----CPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred cCCCchHHHhHH------------HHHHHhccchHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 344444443333 88888888888888888888887 3557888888888888888888888888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHH
Q 008039 306 NKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELK 385 (580)
Q Consensus 306 ~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk 385 (580)
.++++..|.+..++.++|.+|.+.|++++|+..|+.++.+.+...+.- .|+ ....+++......++-..
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~---------~Nm--Gnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL---------SNM--GNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH---------Hhc--chHHHHhhhHHHHHHHHH
Confidence 888888888888888888888888888888888888887732211111 111 112233333333333332
Q ss_pred HHhhcCCCCccchhhhhcc-cCCCC-HHHHHHHHHHHHhhcCCCC
Q 008039 386 QRVASGETGNVDYYALIGL-RRGCS-RSELERAHLLLSLRHKPDK 428 (580)
Q Consensus 386 ~~~~~~~~~~~d~y~iLgv-~~~a~-~~ei~~ayr~lal~~hPDk 428 (580)
..+... ..-.+-+..|+. .+++. -.+.-.+|+. ||+++||.
T Consensus 447 rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~-aLklkPDf 489 (966)
T KOG4626|consen 447 RAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRT-ALKLKPDF 489 (966)
T ss_pred HHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHH-HHccCCCC
Confidence 222211 122334555553 33332 3444456655 99999996
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=9e-20 Score=193.34 Aligned_cols=130 Identities=16% Similarity=0.219 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
..++||.+|..+|++++|+.+|.++++.. |+...+...+
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~--------------------------------------p~~aaa~nNL--- 394 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVF--------------------------------------PEFAAAHNNL--- 394 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhC--------------------------------------hhhhhhhhhH---
Confidence 56789999999999999999999998763 4455544444
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|.++-++|++++||.+|+++|.+ .|..+.+|.|+|..|..+|+...|+.+|++||.++|.+.+|+.
T Consensus 395 ---------a~i~kqqgnl~~Ai~~YkealrI-----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 395 ---------ASIYKQQGNLDDAIMCYKEALRI-----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred ---------HHHHHhcccHHHHHHHHHHHHhc-----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 88999999999999999999998 6779999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++|.+|...|+..+||..|+.+++|
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999988
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2.5e-17 Score=186.88 Aligned_cols=259 Identities=15% Similarity=0.081 Sum_probs=179.9
Q ss_pred cccccchhhh----HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 13 KHWWLSNRKI----VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 13 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
+++|.-+++. ...+...|..++ ..|+|..|+..|+++|.+.|+ +.++.++|.||+.+|+|++|+++|.++|
T Consensus 113 ~~~~~~~~~~~~~~a~~~k~~G~~~~---~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al- 187 (615)
T TIGR00990 113 SSVANLSEEERKKYAAKLKEKGNKAY---RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAAL- 187 (615)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHH-
Confidence 3444544443 334567777777 689999999999999999997 6889999999999999999999999966
Q ss_pred hhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHH
Q 008039 89 SLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQA 168 (580)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a 168 (580)
++.|++ ...|+.+|.+
T Consensus 188 --~l~p~~--------------------------------------------------------------~~a~~~~a~a 203 (615)
T TIGR00990 188 --ELDPDY--------------------------------------------------------------SKALNRRANA 203 (615)
T ss_pred --HcCCCC--------------------------------------------------------------HHHHHHHHHH
Confidence 333221 2468889999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHH--------hhh----------hhhcccCCCCCCC-----CCC--CCCCCCCCCCCCC
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATA--------AFR----------RESISLSDDSFPF-----SKF--PVSNNHQTPPATP 223 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~--------~~r----------~~~~~~~~d~~~~-----~~l--~~~~~~~~~~~~~ 223 (580)
|..+|++++|+..|..+..+.+- ..+ ...+......... ..+ .............
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 99999999999988766433210 000 0000000000000 000 0000000000001
Q ss_pred CCCCCC--------------------hHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 224 PRTMTE--------------------SESVSQLLSHIK--------LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 224 ~~~dPd--------------------~~~~~~ll~~~k--------~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+..+|+ ...+...+...- ....+...|..++..|++++|+..|.++|.+
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--- 360 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--- 360 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 111121 111112221111 1223455688999999999999999999997
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.....|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+.+|++++++
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34578899999999999999999999999999999999999999999999999999999999999887
No 6
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.1e-18 Score=180.60 Aligned_cols=225 Identities=20% Similarity=0.226 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
+.-..+...+ ...++..|+..|+.+++++ .+..++.++|.+++.+|.|.+++..|.+++..-..
T Consensus 226 ~ek~lgnaay---kkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre------------ 289 (539)
T KOG0548|consen 226 KEKELGNAAY---KKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE------------ 289 (539)
T ss_pred HHHHHHHHHH---HhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH------------
Confidence 3444445555 5678999999999999999 99999999999999999999999999996632111
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
.+...++ ++. .+..+|.+|..+|+++.|+.+|++
T Consensus 290 -----~rad~kl------------------------------Iak-----------~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 290 -----LRADYKL------------------------------IAK-----------ALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred -----HHHHHHH------------------------------HHH-----------HHHHhhhhhhhHHhHHHHHHHHHH
Confidence 0111111 111 133478999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQ-----LLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~-----ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
++.-. |.+ +.+.. ..+-+.... .+.........+.+||.+|+.|+|
T Consensus 324 aLte~----Rt~------~~ls~-------------------lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 324 ALTEH----RTP------DLLSK-------------------LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred Hhhhh----cCH------HHHHH-------------------HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 87431 110 00000 000000000 001112245567889999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
..||.+|+++|.. .|.++.+|+|||.||.++|.+..|+.||+.+|++||+++++|++.|.++..+.+|+.|+..|
T Consensus 375 ~~Av~~YteAIkr-----~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR-----DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HHHHHHHHHHHhc-----CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 45689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 008039 340 EHLKLL 345 (580)
Q Consensus 340 ~~al~l 345 (580)
+.++++
T Consensus 450 ~eale~ 455 (539)
T KOG0548|consen 450 QEALEL 455 (539)
T ss_pred HHHHhc
Confidence 999877
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=8.1e-17 Score=182.76 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=166.2
Q ss_pred hChhhHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH
Q 008039 37 QEHSEIASALSLLDAALAL---SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER 113 (580)
Q Consensus 37 ~~~~d~~~Al~~~~~Al~l---~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (580)
...++|.+|+..|++++.+ .|....++.++|.+++.+|++++|+.+|++++ ...|.+
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal---~l~P~~----------------- 364 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI---ELDPRV----------------- 364 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCc-----------------
Confidence 3457899999999999987 48888999999999999999999999999966 222211
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 008039 114 VKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAF 193 (580)
Q Consensus 114 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~ 193 (580)
.+.|+.+|.+++.+|++++|+..|++++++.
T Consensus 365 ---------------------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---- 395 (615)
T TIGR00990 365 ---------------------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLN---- 395 (615)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 1357889999999999999999999998762
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 194 RRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 194 r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
|++..+...+ |..++..|+|++|+..|++++.+
T Consensus 396 ----------------------------------p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~kal~l- 428 (615)
T TIGR00990 396 ----------------------------------SEDPDIYYHR------------AQLHFIKGEFAQAGKDYQKSIDL- 428 (615)
T ss_pred ----------------------------------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHc-
Confidence 5554444333 99999999999999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 274 RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 274 ~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.+..+++++|.++..+|++++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 429 ----~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 429 ----DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred ----CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34578889999999999999999999999999999999999999999999999999999999999888
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=6.5e-16 Score=176.17 Aligned_cols=91 Identities=18% Similarity=0.069 Sum_probs=85.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHH----HHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAE----SIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~e----Al~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
|..++..|++++|+..|.+++.. .|....+++++|.++..+|++++ |+..|++++.++|+++.++..+|.+
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 77888999999999999999997 34578999999999999999986 8999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
+...|++++|+..|++++++
T Consensus 294 l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999887
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=3.9e-15 Score=169.77 Aligned_cols=91 Identities=16% Similarity=0.091 Sum_probs=51.5
Q ss_pred HHHHHHcCCHHH----HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDAGLYSE----AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~e----Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
|..++..|++++ |+..|.+++.+ .|....++.++|.++..+|++++|+..+++++.++|+++.++..+|.+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555555553 55555555554 223455555555555555555555555555555555555555555555
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
+..+|++++|+..|++++..
T Consensus 328 l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 10
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.5e-16 Score=161.03 Aligned_cols=205 Identities=17% Similarity=0.216 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
+.-||+.+..++ +.++-.+-...|++|..++|.++..|++||.+++-+++|++|+.+|++++ .++|
T Consensus 360 ~~lyI~~a~~y~---d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai---~L~p-------- 425 (606)
T KOG0547|consen 360 NSLYIKRAAAYA---DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI---SLDP-------- 425 (606)
T ss_pred chHHHHHHHHHh---hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh---hcCh--------
Confidence 333888887777 67778888889999999999999999999999999999999999999966 2222
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
+..++|..++-+.++++.+++++..|
T Consensus 426 ------------------------------------------------------e~~~~~iQl~~a~Yr~~k~~~~m~~F 451 (606)
T KOG0547|consen 426 ------------------------------------------------------ENAYAYIQLCCALYRQHKIAESMKTF 451 (606)
T ss_pred ------------------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22357888999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEA 262 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eA 262 (580)
+.+.+-- |....+..++ |.++..+++|+.|
T Consensus 452 ee~kkkF--------------------------------------P~~~Evy~~f------------AeiLtDqqqFd~A 481 (606)
T KOG0547|consen 452 EEAKKKF--------------------------------------PNCPEVYNLF------------AEILTDQQQFDKA 481 (606)
T ss_pred HHHHHhC--------------------------------------CCCchHHHHH------------HHHHhhHHhHHHH
Confidence 9887541 6778888888 8899999999999
Q ss_pred HHHHHHHHhccCCCCC--cccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 263 IRHFSKIVDGRRGAPQ--GFLAECYMHRAFAYRS-SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 263 i~~y~~AL~~~~~~~~--~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
++.|+.||++. |..+ -.++..+.+.|...++ .+++..|+..|++||++||.+-.|+..+|++..++|+.++||..|
T Consensus 482 ~k~YD~ai~LE-~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 482 VKQYDKAIELE-PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHHHHhhc-cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999983 3211 1245566666655443 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 340 EHLKLLY 346 (580)
Q Consensus 340 ~~al~l~ 346 (580)
++++.|.
T Consensus 561 Eksa~lA 567 (606)
T KOG0547|consen 561 EKSAQLA 567 (606)
T ss_pred HHHHHHH
Confidence 9998884
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.2e-15 Score=158.96 Aligned_cols=251 Identities=15% Similarity=0.137 Sum_probs=167.7
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....+-..|...+ .+|+|++||.+|+.||+++|+.+..|.+|+.||.++|.+++++++|-+++ +++|+..
T Consensus 114 ~A~~lK~~GN~~f---~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL---El~P~Y~---- 183 (606)
T KOG0547|consen 114 YAAALKTKGNKFF---RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL---ELNPDYV---- 183 (606)
T ss_pred HHHHHHhhhhhhh---hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh---hcCcHHH----
Confidence 4444556666677 78999999999999999999999999999999999999999999999954 5544322
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
-+++..+.++-.+|++++|+..
T Consensus 184 ----------------------------------------------------------KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 184 ----------------------------------------------------------KALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHhhccHHHHHHh
Confidence 1455567777777777777655
Q ss_pred HH------------------HHHHH-----HHHhhh--hhhcccCCCCCCCCCCCCCCCCCCCC--CCCCCCCCChHHHH
Q 008039 182 LQ------------------TGKRL-----ATAAFR--RESISLSDDSFPFSKFPVSNNHQTPP--ATPPRTMTESESVS 234 (580)
Q Consensus 182 l~------------------~al~l-----~~~~~r--~~~~~~~~d~~~~~~l~~~~~~~~~~--~~~~~~dPd~~~~~ 234 (580)
+. +.+.. ....++ |.. ....-.|..+.++.....+... ......|-+.....
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p-~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP-VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC-CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 32 11111 011111 100 0000111111111110000000 00111111111111
Q ss_pred -HHHHH-----------H---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc
Q 008039 235 -QLLSH-----------I---------------------KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL 281 (580)
Q Consensus 235 -~ll~~-----------~---------------------k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~ 281 (580)
.+++. + .-+..+.-.|.-+|-.|++-.|-..|+++|.+ ++..
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l-----~~~~ 359 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL-----DPAF 359 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc-----Cccc
Confidence 11111 0 00222334577778899999999999999998 3335
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+|..||.+|...++..+-..+|++|..+||+++..|+.||+++.-+++|++|+.||++++.|.
T Consensus 360 ~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 360 NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56699999999999999999999999999999999999999999999999999999999999983
No 12
>PRK12370 invasion protein regulator; Provisional
Probab=99.69 E-value=4.3e-15 Score=166.50 Aligned_cols=195 Identities=11% Similarity=0.061 Sum_probs=161.7
Q ss_pred HHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC---------hHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 30 ARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRR---------FKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 30 ~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r---------~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
++..+.....+++..|+.+|++|++++|.++.+|..+|.+++.+++ +++|+..+++++ +++|++.
T Consensus 265 g~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al---~ldP~~~--- 338 (553)
T PRK12370 265 GKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT---ELDHNNP--- 338 (553)
T ss_pred hHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH---hcCCCCH---
Confidence 4444444456789999999999999999999999999999886544 789999999855 3333222
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
+.|..+|.++...|++++|+.
T Consensus 339 -----------------------------------------------------------~a~~~lg~~~~~~g~~~~A~~ 359 (553)
T PRK12370 339 -----------------------------------------------------------QALGLLGLINTIHSEYIVGSL 359 (553)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHccCHHHHHH
Confidence 367788999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYS 260 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~ 260 (580)
.|+++++++ |++..+...+ |..++..|+++
T Consensus 360 ~~~~Al~l~--------------------------------------P~~~~a~~~l------------g~~l~~~G~~~ 389 (553)
T PRK12370 360 LFKQANLLS--------------------------------------PISADIKYYY------------GWNLFMAGQLE 389 (553)
T ss_pred HHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHCCCHH
Confidence 999999873 5656555444 99999999999
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 261 EAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE-PSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 261 eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld-P~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
+|+..|.+++++ +| .....++.++.+++.+|++++|+..+.+++..+ |+++.++..+|.+|..+|++++|+..+
T Consensus 390 eAi~~~~~Al~l-~P----~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 390 EALQTINECLKL-DP----TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred HHHHHHHHHHhc-CC----CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998 23 355566677777888999999999999999875 889999999999999999999999999
Q ss_pred HHHHH
Q 008039 340 EHLKL 344 (580)
Q Consensus 340 ~~al~ 344 (580)
+++..
T Consensus 465 ~~~~~ 469 (553)
T PRK12370 465 KEIST 469 (553)
T ss_pred HHhhh
Confidence 88743
No 13
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.68 E-value=6.5e-14 Score=140.68 Aligned_cols=220 Identities=17% Similarity=0.127 Sum_probs=190.2
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.++..|.++++.+..++ ..|.+..||..|..|++.+|++-.+++-||.+|+.+|+-..|+.++.++| ++.|+..
T Consensus 33 ~~~advekhlElGk~ll---a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~ 106 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELL---ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFM 106 (504)
T ss_pred CCHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHH
Confidence 57789999999999999 58889999999999999999999999999999999999999999999965 3333222
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
+ +-...|.++.++|.++.
T Consensus 107 ~--------------------------------------------------------------ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 107 A--------------------------------------------------------------ARIQRGVVLLKQGELEQ 124 (504)
T ss_pred H--------------------------------------------------------------HHHHhchhhhhcccHHH
Confidence 1 23557999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|...|+..++-.+. .-....+..-+..+.+...+......++..|
T Consensus 125 A~~DF~~vl~~~~s-----------------------------------~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 125 AEADFDQVLQHEPS-----------------------------------NGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred HHHHHHHHHhcCCC-----------------------------------cchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 99999998754210 0123344445555666677778888999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++..||...+..|++ .|..+.++..|+.||...|+...||.|...+-++..++.+++|..+.+++..|+.+.++.
T Consensus 170 D~~~ai~~i~~llEi-----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEI-----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred chhhHHHHHHHHHhc-----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999998 677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
..+.++++
T Consensus 245 ~iRECLKl 252 (504)
T KOG0624|consen 245 EIRECLKL 252 (504)
T ss_pred HHHHHHcc
Confidence 99999888
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=1.4e-14 Score=140.55 Aligned_cols=203 Identities=16% Similarity=0.127 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-++..+..++ ..|++++|+..+++++..+|.+..++..+|.+++.+|++++|++.+++++. ..|.+
T Consensus 30 ~~~~~~~la~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~~~~----- 98 (234)
T TIGR02521 30 AAKIRVQLALGYL---EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT---LNPNN----- 98 (234)
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCC-----
Confidence 4566777788877 689999999999999999999999999999999999999999999999652 21111
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...++.+|.+++..|++++|+..
T Consensus 99 ---------------------------------------------------------~~~~~~~~~~~~~~g~~~~A~~~ 121 (234)
T TIGR02521 99 ---------------------------------------------------------GDVLNNYGTFLCQQGKYEQAMQQ 121 (234)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcccHHHHHHH
Confidence 12467789999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++.... .+... ..+... |..++..|++++
T Consensus 122 ~~~~~~~~~------------------------------------~~~~~--~~~~~l----------~~~~~~~g~~~~ 153 (234)
T TIGR02521 122 FEQAIEDPL------------------------------------YPQPA--RSLENA----------GLCALKAGDFDK 153 (234)
T ss_pred HHHHHhccc------------------------------------cccch--HHHHHH----------HHHHHHcCCHHH
Confidence 999875410 01111 112222 889999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
|+..|.+++.. .|....++..+|.++...|++++|+..+++++.+.|.++..+..++.++...|++++|...++.
T Consensus 154 A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 154 AEKYLTRALQI-----DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh-----CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999997 2336778999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
+..+
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 7543
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=1.8e-14 Score=153.71 Aligned_cols=204 Identities=16% Similarity=0.105 Sum_probs=161.0
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchh
Q 008039 27 IRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS 106 (580)
Q Consensus 27 ~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~ 106 (580)
+..+..++ ..|+++.|+..|.++++.+|.+..++..+|.+++..|++++|+..++.++.. |...
T Consensus 39 y~~g~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~--------- 102 (389)
T PRK11788 39 YFKGLNFL---LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR----PDLT--------- 102 (389)
T ss_pred HHHHHHHH---hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC----CCCC---------
Confidence 34454444 5789999999999999999999999999999999999999999999885521 0000
Q ss_pred hHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008039 107 QQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGK 186 (580)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al 186 (580)
.......+..+|.+|+..|++++|+..|++++
T Consensus 103 ------------------------------------------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 103 ------------------------------------------------REQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00011246788999999999999999999877
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008039 187 RLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHF 266 (580)
Q Consensus 187 ~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y 266 (580)
+.. |....+...+ +..+.+.|+|++|+..|
T Consensus 135 ~~~--------------------------------------~~~~~~~~~l------------a~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 135 DEG--------------------------------------DFAEGALQQL------------LEIYQQEKDWQKAIDVA 164 (389)
T ss_pred cCC--------------------------------------cchHHHHHHH------------HHHHHHhchHHHHHHHH
Confidence 531 3223332222 88889999999999999
Q ss_pred HHHHhccCCCC-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 267 SKIVDGRRGAP-QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 267 ~~AL~~~~~~~-~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++... |.+ ......+++++|.++...|++++|+..|.++++++|++..+++.+|.++...|++++|+..|+++++.
T Consensus 165 ~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 165 ERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9998863 321 11234567789999999999999999999999999999999999999999999999999999999766
No 16
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=5.9e-16 Score=154.05 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
..+++.+|.+||.+++.++|.+||..|++||.+ .|.+++.|+||+.+|.++|.|+.|+.||..||.+||.+.++|
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence 345778899999999999999999999999998 456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++|.+|..+|+|++|+..|+++++|
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 99999999999999999999999988
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=7.9e-15 Score=158.40 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCChHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVS-------NNHQTPPATPPRTMTESESVS 234 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~-------~~~~~~~~~~~~~dPd~~~~~ 234 (580)
|..+|.||..+++++.||++|++++++++. ..+....+|.. +.+...+...++.||.+=++
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~-----------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA- 491 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPR-----------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA- 491 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCc-----------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH-
Confidence 455566666666666666666666655421 11111111111 01122233344455644444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 235 QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 235 ~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
++.. |.++.++++|+.|.-+|++|+++ .|.+..+.+..|..+.++|+.++|+..+++|+.+||.
T Consensus 492 -wYGl----------G~vy~Kqek~e~Ae~~fqkA~~I-----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 492 -WYGL----------GTVYLKQEKLEFAEFHFQKAVEI-----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred -HHhh----------hhheeccchhhHHHHHHHhhhcC-----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 4444 99999999999999999999998 4568899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++-..|.+|.++..+++|++|+..|+.+.++
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.64 E-value=3.6e-14 Score=164.84 Aligned_cols=233 Identities=17% Similarity=0.135 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
.++.++..|..++ ..|++..|+..|.+++.++|.++.++..+|.+++.+|+|++|+..|++++ ...|++....
T Consensus 21 ~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~- 93 (899)
T TIGR02917 21 SPESLIEAAKSYL---QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKAL---SLGYPKNQVL- 93 (899)
T ss_pred CHHHHHHHHHHHH---HcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCChhhhH-
Confidence 6677889999988 68999999999999999999999999999999999999999999999965 3333222110
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhc---cccccchhHHHHHHHHHHhcCCHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCR---NCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~---~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
...+..+....+ . .+++..+.. .........++.+|.+++..|++++|
T Consensus 94 ---------~~~a~~~~~~g~-------~-------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 144 (899)
T TIGR02917 94 ---------PLLARAYLLQGK-------F-------------QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELA 144 (899)
T ss_pred ---------HHHHHHHHHCCC-------H-------------HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHH
Confidence 000111110000 0 011111111 11122334577899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
+..|++++... |++.... +.. |..++..|+
T Consensus 145 ~~~~~~a~~~~--------------------------------------~~~~~~~--~~l----------a~~~~~~~~ 174 (899)
T TIGR02917 145 QKSYEQALAID--------------------------------------PRSLYAK--LGL----------AQLALAENR 174 (899)
T ss_pred HHHHHHHHhcC--------------------------------------CCChhhH--HHH----------HHHHHHCCC
Confidence 99999987652 4333332 223 889999999
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
|++|+..+.+++.. .|....+++.+|.++...|++++|+..|.+++.++|+++.+++.++.++...|++++|...
T Consensus 175 ~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 249 (899)
T TIGR02917 175 FDEARALIDEVLTA-----DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKH 249 (899)
T ss_pred HHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999996 3446789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
|+++++.
T Consensus 250 ~~~~~~~ 256 (899)
T TIGR02917 250 ADALLKK 256 (899)
T ss_pred HHHHHHh
Confidence 9999776
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.64 E-value=1.5e-13 Score=166.55 Aligned_cols=252 Identities=12% Similarity=0.061 Sum_probs=174.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhH-------
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLS------- 110 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------- 110 (580)
..|++++|+..|+++|.++|.++.++..+|.+++.+|++++|+..|++++ +..|++..... -.+-+.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al---~~~p~~~~~~~---~~~ll~~~~~~~~ 354 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL---ALDPHSSNRDK---WESLLKVNRYWLL 354 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCccchhH---HHHHHHhhhHHHH
Confidence 57999999999999999999999999999999999999999999999965 44554331100 000000
Q ss_pred -HHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008039 111 -RERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 111 -~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~ 189 (580)
.....++..+ ...+....+...+..++ ...++++.||.++...|++++|+..|++++++.
T Consensus 355 ~~~g~~~~~~g-----------------~~~eA~~~~~~Al~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 355 IQQGDAALKAN-----------------NLAQAERLYQQARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHHHHHHCC-----------------CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 0000011111 01111112222222333 334678889999999999999999999999875
Q ss_pred HHhhhh-hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q 008039 190 TAAFRR-ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI--------------KLLLRRRTAAIAAL 254 (580)
Q Consensus 190 ~~~~r~-~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~--------------k~~~~~k~~G~~~~ 254 (580)
|..... ..+. ..+ . . ...+.+..++..+ .....+...|..+.
T Consensus 416 p~~~~a~~~L~---~l~--~-~-----------------~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 416 PGNTNAVRGLA---NLY--R-Q-----------------QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred CCCHHHHHHHH---HHH--H-h-----------------cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 321100 0000 000 0 0 0001111111110 11223455789999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|++++|+..|.+++.+ .|.+..+++++|.+|..+|++++|+..+++++.++|+++.+++.+|..+...+++++
T Consensus 473 ~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999997 445788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 335 CLHDLEHL 342 (580)
Q Consensus 335 Ai~~~~~a 342 (580)
|+..|+++
T Consensus 548 Al~~l~~l 555 (1157)
T PRK11447 548 ALAHLNTL 555 (1157)
T ss_pred HHHHHHhC
Confidence 99988865
No 20
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=2.3e-15 Score=141.19 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
+.+.++.+++.+||.+|+.|+|.+|...|+.||.++++......+.+|.|||.|+++++.|+.||.+|.+||+|+|.|.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 34567888999999999999999999999999999877666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|+.+||.+|..+..|++|+.||.+++++
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888
No 21
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.64 E-value=2.8e-14 Score=147.51 Aligned_cols=197 Identities=14% Similarity=-0.001 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-|+..|..+. ..|++..|+..|+++++++|+++.+|..+|.++..+|+|++|++.|++++ +++|++.
T Consensus 63 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al---~l~P~~~---- 132 (296)
T PRK11189 63 RAQLHYERGVLYD---SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYN---- 132 (296)
T ss_pred hHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCH----
Confidence 3444666776665 57999999999999999999999999999999999999999999999965 3333222
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
..|+.+|.+++..|++++|+..
T Consensus 133 ----------------------------------------------------------~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 133 ----------------------------------------------------------YAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHCCCHHHHHHH
Confidence 3678899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++++. |++.. ..++ .......+++++
T Consensus 155 ~~~al~~~--------------------------------------P~~~~-~~~~------------~~l~~~~~~~~~ 183 (296)
T PRK11189 155 LLAFYQDD--------------------------------------PNDPY-RALW------------LYLAESKLDPKQ 183 (296)
T ss_pred HHHHHHhC--------------------------------------CCCHH-HHHH------------HHHHHccCCHHH
Confidence 99999773 33331 1111 112345689999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHH--H----HHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAES--I----ADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eA--l----~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
|+..|.+++...++. .+ ..+.+++.+|++.++ + ..++.+++++|....+|+.+|.++..+|++++|
T Consensus 184 A~~~l~~~~~~~~~~-------~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 184 AKENLKQRYEKLDKE-------QW-GWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHhhCCcc-------cc-HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999998877642111 12 246777777876443 3 223344577888999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 336 LHDLEHLKLL 345 (580)
Q Consensus 336 i~~~~~al~l 345 (580)
+..|++++++
T Consensus 256 ~~~~~~Al~~ 265 (296)
T PRK11189 256 AALFKLALAN 265 (296)
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.61 E-value=3e-13 Score=157.21 Aligned_cols=267 Identities=14% Similarity=0.073 Sum_probs=161.5
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.+|..+.-+...+..+. ..|++.+|+..|.+++..+|.+...+..++.++...|++++|+..+++++. ..|.+.
T Consensus 528 ~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 601 (899)
T TIGR02917 528 IDPKNLRAILALAGLYL---RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD---AAPDSP 601 (899)
T ss_pred hCcCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCH
Confidence 34445555555555554 466777777777777777777777777777777777777777777777542 222211
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
.. .......+.... ...+...-+...+..++ .....++.+|.++...|++++
T Consensus 602 ~~----------~~~l~~~~~~~~----------------~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 602 EA----------WLMLGRAQLAAG----------------DLNKAVSSFKKLLALQP--DSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HH----------HHHHHHHHHHcC----------------CHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHH
Confidence 00 000001110000 00000000001111111 223456667788888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH-----HHHHHHHHHH
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL-----LLRRRTAAIA 252 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~-----~~~~k~~G~~ 252 (580)
|+..|++++.+.+.... ........ +... -+...+..++..+.. .......|..
T Consensus 654 A~~~~~~~~~~~~~~~~--~~~~l~~~--~~~~-----------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 654 AITSLKRALELKPDNTE--AQIGLAQL--LLAA-----------------KRTESAKKIAKSLQKQHPKAALGFELEGDL 712 (899)
T ss_pred HHHHHHHHHhcCCCCHH--HHHHHHHH--HHHc-----------------CCHHHHHHHHHHHHhhCcCChHHHHHHHHH
Confidence 88888777765321000 00000000 0000 001111111111110 1112334899
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
++..|+|++|+..|.+++... |. . ..+++++.++..+|++++|+..+.+++..+|+++.+++.+|.++..+|++
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~-~~----~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRA-PS----S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhC-CC----c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999962 32 2 67889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|+..|+++++.
T Consensus 787 ~~A~~~~~~~~~~ 799 (899)
T TIGR02917 787 DKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999877
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.61 E-value=1e-13 Score=162.83 Aligned_cols=231 Identities=12% Similarity=-0.014 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-|...|..+. .++..+|+..|.+++...|.+. .+...|.++...|++++|+..|++++. ..|.+. .
T Consensus 476 ~~~a~~~LG~~l~----~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~-a-- 544 (987)
T PRK09782 476 DAAAWNRLAKCYR----DTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL---HDMSNE-D-- 544 (987)
T ss_pred CHHHHHHHHHHHH----hCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcH-H--
Confidence 6667777887776 3788889999999999999865 466678888899999999999998542 111111 0
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
......-++..++ ......-+...+..+++. .-.+..++..+..+|++++|+..
T Consensus 545 -------~~~la~all~~Gd-----------------~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 545 -------LLAAANTAQAAGN-----------------GAARDRWLQQAEQRGLGD--NALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred -------HHHHHHHHHHCCC-----------------HHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHhCCCHHHHHHH
Confidence 0000001111110 000001111111112111 11233455566667888999888
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++++ +|+ ... +... |.++.+.|++++
T Consensus 599 ~~~AL~l--------------------------------------~P~-~~a--~~~L----------A~~l~~lG~~de 627 (987)
T PRK09782 599 LTRSLNI--------------------------------------APS-ANA--YVAR----------ATIYRQRHNVPA 627 (987)
T ss_pred HHHHHHh--------------------------------------CCC-HHH--HHHH----------HHHHHHCCCHHH
Confidence 8888866 253 222 2333 999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
|+..|.+++.+ .|.++.+++++|.++..+|++++|+..|.++++++|+++.+++++|.++..+|++++|+..|++
T Consensus 628 A~~~l~~AL~l-----~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 628 AVSDLRAALEL-----EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999997 4558899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
++++
T Consensus 703 Al~l 706 (987)
T PRK09782 703 VIDD 706 (987)
T ss_pred HHhc
Confidence 9888
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=1.3e-13 Score=154.63 Aligned_cols=186 Identities=10% Similarity=-0.062 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
.+++.+|+..+++|++++|+++.+|..+|.++..+|++++|+..|++++ +++|+++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al---~l~P~~~--------------------- 372 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQAN---LLSPISA--------------------- 372 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCH---------------------
Confidence 3568999999999999999999999999999999999999999999965 3444322
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
..|+.+|.++..+|++++|+..|+++++++
T Consensus 373 -----------------------------------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--------- 402 (553)
T PRK12370 373 -----------------------------------------DIKYYYGWNLFMAGQLEEALQTINECLKLD--------- 402 (553)
T ss_pred -----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------
Confidence 257788999999999999999999999873
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
|++..+...+ +..++..|+|++|+..|.+++... .
T Consensus 403 -----------------------------P~~~~~~~~~------------~~~~~~~g~~eeA~~~~~~~l~~~----~ 437 (553)
T PRK12370 403 -----------------------------PTRAAAGITK------------LWITYYHTGIDDAIRLGDELRSQH----L 437 (553)
T ss_pred -----------------------------CCChhhHHHH------------HHHHHhccCHHHHHHHHHHHHHhc----c
Confidence 4433332222 556778999999999999999853 2
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|..+.++.++|.++..+|++++|+..+.+.+...|....++..++.+|..+| +.|...++++++.
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999 4888888887665
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.60 E-value=6.1e-14 Score=164.63 Aligned_cols=230 Identities=10% Similarity=-0.064 Sum_probs=173.3
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
.+..+..+. ..|++++|+..|.+++...|.+ ..+...|.+++..|++++|+..|++++ ...|++....
T Consensus 512 ~L~lA~al~---~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL---~l~P~~~~l~----- 579 (987)
T PRK09782 512 HRAVAYQAY---QVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAE---QRGLGDNALY----- 579 (987)
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCccHHHH-----
Confidence 333444443 6789999999999988887775 456778999999999999999999866 3333322000
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTG 185 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~a 185 (580)
..+ ...+...+ ...+...-+...+..+++ .-.|+.+|.++..+|++++|+..|+++
T Consensus 580 -~~L---a~~l~~~G-----------------r~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 580 -WWL---HAQRYIPG-----------------QPELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred -HHH---HHHHHhCC-----------------CHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 00000001 001111112223333443 346789999999999999999999999
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 008039 186 KRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRH 265 (580)
Q Consensus 186 l~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~ 265 (580)
+.+ +|++..+...+ |..+...|++++|+.+
T Consensus 636 L~l--------------------------------------~Pd~~~a~~nL------------G~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 636 LEL--------------------------------------EPNNSNYQAAL------------GYALWDSGDIAQSREM 665 (987)
T ss_pred HHh--------------------------------------CCCCHHHHHHH------------HHHHHHCCCHHHHHHH
Confidence 977 36666555544 9999999999999999
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 266 FSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 266 y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.+++++ .|.++.+++++|.++..+|++++|+..|+++++++|++.......|.+.....+|+.|..+|.+...+
T Consensus 666 l~~AL~l-----~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 666 LERAHKG-----LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999997 45588999999999999999999999999999999999999999999999999999999999999776
Q ss_pred H
Q 008039 346 Y 346 (580)
Q Consensus 346 ~ 346 (580)
.
T Consensus 741 ~ 741 (987)
T PRK09782 741 S 741 (987)
T ss_pred C
Confidence 3
No 26
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.6e-13 Score=140.68 Aligned_cols=254 Identities=15% Similarity=0.160 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
.++-.++..++ ..|||+.|+.+|..||.++|.+...+.+|-.+|..+|+|++|+.+-.+.+ +++|+ |
T Consensus 3 ~e~k~kgnaa~---s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~-w------ 69 (539)
T KOG0548|consen 3 VELKEKGNAAF---SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPD-W------ 69 (539)
T ss_pred hHHHHHHHhhc---ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCc-h------
Confidence 44556666666 78999999999999999999999999999999999999999999777633 34331 1
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
. -.|..+|.+++.+|+|++|+..|.
T Consensus 70 -----------------------------~--------------------------kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 70 -----------------------------A--------------------------KGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred -----------------------------h--------------------------hHHHHhHHHHHhcccHHHHHHHHH
Confidence 0 137778889999999999998888
Q ss_pred HHHHHHHHh----------hhhh--h-------------------------------------------cccCCCCCC--
Q 008039 184 TGKRLATAA----------FRRE--S-------------------------------------------ISLSDDSFP-- 206 (580)
Q Consensus 184 ~al~l~~~~----------~r~~--~-------------------------------------------~~~~~d~~~-- 206 (580)
++|+..+.. .+.. . .+..++.+.
T Consensus 95 ~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 95 EGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred HHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 887653210 0000 0 000000000
Q ss_pred --------CCCCCCCCCCCCCCCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 207 --------FSKFPVSNNHQTPPATPP-----RTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 207 --------~~~l~~~~~~~~~~~~~~-----~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
...+...+..+...+..| ..-|..+.-..-.+........+..||.+++..+|..|+.+|..++++.
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 000000111111111111 1112222333333355567778889999999999999999999888751
Q ss_pred C-------------------------------------------------------------------------------
Q 008039 274 R------------------------------------------------------------------------------- 274 (580)
Q Consensus 274 ~------------------------------------------------------------------------------- 274 (580)
.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l 334 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL 334 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH
Confidence 0
Q ss_pred ----------------CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 275 ----------------GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 275 ----------------~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
....|..+.-..+.|..+++.|+|..|+..|++||..+|++..+|.+||-||..+|.+..|+.|
T Consensus 335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 0001112344455677788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
.+.++++
T Consensus 415 a~~~ieL 421 (539)
T KOG0548|consen 415 AKKCIEL 421 (539)
T ss_pred HHHHHhc
Confidence 9999988
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.9e-14 Score=153.09 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=174.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
+=++.+|+..|.+.-+..++..-.+.+.|++|+.++.|++|..+|+.+- +..|
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r---~~~p------------------------ 384 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVR---RIEP------------------------ 384 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcc------------------------
Confidence 4578999999999778888888889999999999999999999999843 1111
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
-+ ++.+ ..| ..+++++.+. -++..|-+-+ +...-.+++++
T Consensus 385 -~r------------v~~m----------------------eiy---ST~LWHLq~~-v~Ls~Laq~L-i~~~~~sPesW 424 (638)
T KOG1126|consen 385 -YR------------VKGM----------------------EIY---STTLWHLQDE-VALSYLAQDL-IDTDPNSPESW 424 (638)
T ss_pred -cc------------ccch----------------------hHH---HHHHHHHHhh-HHHHHHHHHH-HhhCCCCcHHH
Confidence 00 0000 001 2233333221 1122222111 11111223444
Q ss_pred ccCCCCCCCCCCCCCCC-CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008039 199 SLSDDSFPFSKFPVSNN-HQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP 277 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~-~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~ 277 (580)
|..++.|++.. +.+ +.+...-.+-+||...=+..++ |-.+.....|+.|..+|..||..
T Consensus 425 ca~GNcfSLQk---dh~~Aik~f~RAiQldp~faYayTLl------------GhE~~~~ee~d~a~~~fr~Al~~----- 484 (638)
T KOG1126|consen 425 CALGNCFSLQK---DHDTAIKCFKRAIQLDPRFAYAYTLL------------GHESIATEEFDKAMKSFRKALGV----- 484 (638)
T ss_pred HHhcchhhhhh---HHHHHHHHHHHhhccCCccchhhhhc------------CChhhhhHHHHhHHHHHHhhhcC-----
Confidence 44444443320 000 0000011122344444444444 77777788888888888888886
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCC
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPG 357 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~ 357 (580)
.|.+..+||.+|.+|+++++++.|.-.|.+|+.++|.+.......|.++.++|+.|+|+..|++|+.+.+ +.|-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~------kn~l 558 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP------KNPL 558 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC------CCch
Confidence 4557899999999999999999999999999999999999999999999999999999999999988732 2222
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhc-ccCCCCHHHHHHHHHHHHhhcCCCC
Q 008039 358 PAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIG-LRRGCSRSELERAHLLLSLRHKPDK 428 (580)
Q Consensus 358 ~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLg-v~~~a~~~ei~~ayr~lal~~hPDk 428 (580)
+-..+..+... .....++...++++|+-+ .....-|..|| +.+.........-+.-.|+.++|--
T Consensus 559 ~~~~~~~il~~--~~~~~eal~~LEeLk~~v----P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFS--LGRYVEALQELEELKELV----PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHh--hcchHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 22222111110 112234444455555411 12223333444 3333333334444666778888864
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.57 E-value=5e-13 Score=142.55 Aligned_cols=130 Identities=22% Similarity=0.175 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|.++...|++++|+..|++++++. |+...+...+
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l--- 220 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD--------------------------------------PQCVRASILL--- 220 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------------------------------------cCCHHHHHHH---
Confidence 35678999999999999999999988662 3333333232
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|..+.+.|++++|+..|.+++... |. ....++..++.+|..+|++++|+..+.+++.++|+...+ .
T Consensus 221 ---------a~~~~~~g~~~~A~~~~~~~~~~~-p~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~ 286 (389)
T PRK11788 221 ---------GDLALAQGDYAAAIEALERVEEQD-PE---YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-L 286 (389)
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHHHC-hh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-H
Confidence 889999999999999999999862 21 235678889999999999999999999999999987554 8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+|.++...|++++|+..|+++++.
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999776
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.57 E-value=5.6e-13 Score=161.51 Aligned_cols=285 Identities=14% Similarity=0.099 Sum_probs=170.2
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC--
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD-- 103 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~-- 103 (580)
++..+..++ ..|++++|+..|.+++.++|.++.++..+|.+++.+|++++|++.|++++ +..|++.......
T Consensus 354 ~~~~g~~~~---~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL---~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 354 LIQQGDAAL---KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL---RMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence 455566666 68999999999999999999999999999999999999999999999966 3344332211000
Q ss_pred -------c-----------hh-hHhH-----------HHHHhhh-cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhc
Q 008039 104 -------S-----------SS-QQLS-----------RERVKLL-HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCR 152 (580)
Q Consensus 104 -------~-----------~~-~~~~-----------~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~ 152 (580)
. +. .... ...+.++ ..++ ..+..+.+-..+..
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~-----------------~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK-----------------WAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHh
Confidence 0 00 0000 0111111 1110 11111122223333
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008039 153 NCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES 232 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~ 232 (580)
+++ ..|.++.+|.+|..+|++++|+..|++++++.|.... ..+.. .+.+...+....+.......+.. .....
T Consensus 491 ~P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~--~~~a~--al~l~~~~~~~~Al~~l~~l~~~-~~~~~ 563 (1157)
T PRK11447 491 DPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE--QVYAY--GLYLSGSDRDRAALAHLNTLPRA-QWNSN 563 (1157)
T ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHH--HHHHHhCCCHHHHHHHHHhCCch-hcChh
Confidence 443 4588899999999999999999999999877532110 00000 00000000000000000000000 00000
Q ss_pred HHHHHHHHH-----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHH
Q 008039 233 VSQLLSHIK-----------------------------LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAE 283 (580)
Q Consensus 233 ~~~ll~~~k-----------------------------~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~ 283 (580)
+..+...+. ........|..+.+.|++++|+..|.+++.. .|.+..
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-----~P~~~~ 638 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-----EPGNAD 638 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Confidence 100000000 0001223477777888888888888888886 344677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 284 CYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 284 ~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++++.++..+|++++|+..+++++..+|+++.++..+|.++..+|++++|+..|++++..
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888888888888888888888888888888888888888888888888888665
No 30
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.7e-13 Score=146.24 Aligned_cols=231 Identities=11% Similarity=0.149 Sum_probs=175.0
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchh
Q 008039 27 IRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS 106 (580)
Q Consensus 27 ~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~ 106 (580)
++.|-.++ ..|++.+|.=+|+.|+.-+|.+..+|..+|.+....+.-.-||..+++++ ++.|++
T Consensus 289 f~eG~~lm---~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl---~LdP~N---------- 352 (579)
T KOG1125|consen 289 FKEGCNLM---KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL---ELDPTN---------- 352 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH---hcCCcc----------
Confidence 46777777 78999999999999999999999999999999999999999999999855 333321
Q ss_pred hHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008039 107 QQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGK 186 (580)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al 186 (580)
+.++..||..|...|.--+|+.+|.+=+
T Consensus 353 ----------------------------------------------------leaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 353 ----------------------------------------------------LEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred ----------------------------------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 2356678999999999999999999876
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH----------HHHHHHHHHHc
Q 008039 187 RLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR----------RRTAAIAALDA 256 (580)
Q Consensus 187 ~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~----------~k~~G~~~~~~ 256 (580)
+..+. ...+..... +.. .......++...........-++.+ ..-.|..++-.
T Consensus 381 ~~~p~---------------y~~l~~a~~-~~~-~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 381 RNKPK---------------YVHLVSAGE-NED-FENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HhCcc---------------chhccccCc-ccc-ccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 55321 000000000 000 0000011122211111111111111 12348899999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|+|+.||.+|+.||.. .|.+..+|+.+|..+..-.+..+||..|++||+|.|+|+.++|++|..++.+|.|.||+
T Consensus 444 ~efdraiDcf~~AL~v-----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQV-----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred hHHHHHHHHHHHHHhc-----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 9999999999999997 45589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008039 337 HDLEHLKLLYN 347 (580)
Q Consensus 337 ~~~~~al~l~~ 347 (580)
..|-.|+.+..
T Consensus 519 ~hlL~AL~mq~ 529 (579)
T KOG1125|consen 519 KHLLEALSMQR 529 (579)
T ss_pred HHHHHHHHhhh
Confidence 99999999853
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=7.7e-13 Score=128.29 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=143.0
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccc
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCF 137 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 137 (580)
..+..+..+|.+++..|+|++|++.+++++. ..|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~----------------------------------------- 64 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALE---HDPDD----------------------------------------- 64 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccc-----------------------------------------
Confidence 3467889999999999999999999999652 22111
Q ss_pred cchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 138 SVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 138 ~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
...+..+|.+++.+|++++|+..|++++++.
T Consensus 65 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------------- 95 (234)
T TIGR02521 65 ---------------------YLAYLALALYYQQLGELEKAEDSFRRALTLN---------------------------- 95 (234)
T ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------
Confidence 1356778999999999999999999998762
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC
Q 008039 218 TPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~ 297 (580)
|........+ |..++..|+|++|+..|.+++.. +. .+.....++++|.++...|+
T Consensus 96 ----------~~~~~~~~~~------------~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 96 ----------PNNGDVLNNY------------GTFLCQQGKYEQAMQQFEQAIED--PL-YPQPARSLENAGLCALKAGD 150 (234)
T ss_pred ----------CCCHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhc--cc-cccchHHHHHHHHHHHHcCC
Confidence 3333333222 88999999999999999999985 21 34467789999999999999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+..|.+++..+|++..+++.+|.++...|++++|+..|++++.+
T Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999776
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.5e-12 Score=133.85 Aligned_cols=212 Identities=15% Similarity=0.086 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcC---CCCCCCCCCc---h-hhHhHHH
Q 008039 41 EIASALSLLDAALAL-SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAN---DDSGSVSSDS---S-SQQLSRE 112 (580)
Q Consensus 41 d~~~Al~~~~~Al~l-~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~---~~~~~~~~~~---~-~~~~~~~ 112 (580)
..++++.-+...+.+ -|.+.-+....|.+....++|+.|+..|+++.+. +| +|-...+... . -|+++..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn---DPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN---DPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc---CCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 577888899999998 8999999999999999999999999999996633 33 1111111000 0 0112211
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008039 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAA 192 (580)
Q Consensus 113 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~ 192 (580)
...+.. -++-.-..+..+|.-|.-.++.|.|+.+|+++++|+
T Consensus 319 A~~v~~-----------------------------------idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--- 360 (559)
T KOG1155|consen 319 AQNVSN-----------------------------------IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--- 360 (559)
T ss_pred HHHHHH-----------------------------------hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---
Confidence 111111 111111234457888999999999999999999884
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 193 FRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 193 ~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
|....+..+. |-.++..++-..||+.|..||++
T Consensus 361 -----------------------------------p~~~~aWTLm------------GHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 361 -----------------------------------PKYLSAWTLM------------GHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred -----------------------------------cchhHHHHHh------------hHHHHHhcccHHHHHHHHHHHhc
Confidence 5666677666 89999999999999999999998
Q ss_pred cCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 273 RRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 273 ~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|....+|+.+|++|.-++.+.=|+-+|.+|+.+.|++...|..+|+||.++++.++|+.+|.+++.+
T Consensus 394 -----~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 394 -----NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred -----CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 45578999999999999999999999999999999999999999999999999999999999999876
No 33
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1e-13 Score=143.30 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC----------CCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA----------PQGFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~----------~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
.++....+.++.||.+|+.|+|..|+..|.+|+...+-. .......++.|++.||+++++|.+|+..|++
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 477888999999999999999999999999998863210 0123467899999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQ 386 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~ 386 (580)
+|+++|+|++|+|++|+++..+|+|+.|+.+|++++++. |. +.++..+|..+.+++++...
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~---------P~---------Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE---------PS---------NKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---------CC---------cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999993 33 25666667777777655543
No 34
>PLN02789 farnesyltranstransferase
Probab=99.50 E-value=2.4e-12 Score=133.94 Aligned_cols=187 Identities=11% Similarity=0.069 Sum_probs=153.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-ChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLR-RFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~-r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
..+.+..|+.+++++|.++|.+..+|..|+.+|..++ .++++++.+++++ ..+|.+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i---~~npkn-------------------- 105 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA---EDNPKN-------------------- 105 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH---HHCCcc--------------------
Confidence 4568899999999999999999999999999999999 6899999999966 222211
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM--EDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~--eeAi~~l~~al~l~~~~~r 194 (580)
...|+.+|.++..+|+. ++++.+++++++++
T Consensus 106 ------------------------------------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d----- 138 (320)
T PLN02789 106 ------------------------------------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD----- 138 (320)
T ss_pred ------------------------------------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-----
Confidence 23577788888888874 78899999988762
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~ 274 (580)
|.+-.+. ..+ |.++...|+|++|++.|+++|+.
T Consensus 139 ---------------------------------pkNy~AW--~~R----------~w~l~~l~~~~eeL~~~~~~I~~-- 171 (320)
T PLN02789 139 ---------------------------------AKNYHAW--SHR----------QWVLRTLGGWEDELEYCHQLLEE-- 171 (320)
T ss_pred ---------------------------------cccHHHH--HHH----------HHHHHHhhhHHHHHHHHHHHHHH--
Confidence 4334333 333 88999999999999999999997
Q ss_pred CCCCcccHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRSS---GRI----AESIADCNKTLALEPSCIQALDTRALLLET----IRCLPDCLHDLEHLK 343 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~l---g~~----~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~----lg~~~eAi~~~~~al 343 (580)
++.+..+|++|+.++.++ |.+ ++.+.++.++|.++|++..+|+.++.++.. ++...+|+..+..++
T Consensus 172 ---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 172 ---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred ---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 355889999999999887 333 478889999999999999999999999988 566778888888875
Q ss_pred H
Q 008039 344 L 344 (580)
Q Consensus 344 ~ 344 (580)
.
T Consensus 249 ~ 249 (320)
T PLN02789 249 S 249 (320)
T ss_pred c
Confidence 4
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=8.2e-14 Score=142.61 Aligned_cols=261 Identities=19% Similarity=0.179 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHH-hc-CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAAL-AL-SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al-~l-~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...+..|+.++ ..|++++|++.+.+.+ .. .|.++.+|..+|.+...++++++|+..|++.+..-...+.+.....
T Consensus 9 ~~~l~~A~~~~---~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~ 85 (280)
T PF13429_consen 9 EEALRLARLLY---QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34556677777 7899999999997655 45 5899999999999999999999999999997632111111110000
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCC--CCCccc-ccchHHHH--HHHHhhhccc-cccchhHHHHHHHHHHhcCCH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGR--DPSFKC-FSVSDLKK--KVMAGLCRNC-EKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~-~~~~~~~k--~~~~~l~~~~-~~~~~~~~~~LG~a~~~lG~~ 175 (580)
.. ....--.+...++...-..+ +++. ...+.+ +...+.++ .++..+.... .......|+.+|.++...|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 00 00000011111111110000 0000 000000 00111111 2222222222 123445577889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+..|++++++. |++..+...+ +..+..
T Consensus 163 ~~A~~~~~~al~~~--------------------------------------P~~~~~~~~l------------~~~li~ 192 (280)
T PF13429_consen 163 DKALRDYRKALELD--------------------------------------PDDPDARNAL------------AWLLID 192 (280)
T ss_dssp HHHHHHHHHHHHH---------------------------------------TT-HHHHHHH------------HHHHCT
T ss_pred HHHHHHHHHHHHcC--------------------------------------CCCHHHHHHH------------HHHHHH
Confidence 99999999999883 6767666555 778899
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
.|+++++...+....... |.++.++..+|.++..+|++++|+..+++++..+|+++..+...|.++...|++++|
T Consensus 193 ~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-----PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TCHHHHHHHHHHHHHHH------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred CCChHHHHHHHHHHHHHC-----cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999888777777642 234567888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 336 LHDLEHLKLL 345 (580)
Q Consensus 336 i~~~~~al~l 345 (580)
+..++++.+.
T Consensus 268 ~~~~~~~~~~ 277 (280)
T PF13429_consen 268 LRLRRQALRL 277 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999998654
No 36
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.48 E-value=7.2e-12 Score=124.58 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE---LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~---~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
...++.++..|..++ ..|++..|+..|++++..+|.++ .++..+|.+++.+|++++|+..|++++ +..|++
T Consensus 30 ~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l---~~~p~~ 103 (235)
T TIGR03302 30 EWPAEELYEEAKEAL---DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI---RLHPNH 103 (235)
T ss_pred cCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HHCcCC
Confidence 457778899999888 68999999999999999999886 578999999999999999999999965 333332
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc----
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL---- 172 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l---- 172 (580)
+.. .+.++.+|.+++..
T Consensus 104 ~~~-----------------------------------------------------------~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 104 PDA-----------------------------------------------------------DYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred Cch-----------------------------------------------------------HHHHHHHHHHHHHhcccc
Confidence 211 13577789998876
Q ss_pred ----CCHHHHHHHHHHHHHH
Q 008039 173 ----GLMEDAMVLLQTGKRL 188 (580)
Q Consensus 173 ----G~~eeAi~~l~~al~l 188 (580)
|++++|+..|++++..
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 8899999999998866
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.2e-12 Score=132.28 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
++.++|+..|.+||.+||....+|.+.|.=++.++.-..|++.|++++ +++|.|.
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~Dy---------------------- 398 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDY---------------------- 398 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhH----------------------
Confidence 788999999999999999999999999999999999999999999966 4444322
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESIS 199 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~ 199 (580)
.+||.||++|--++.+.=|+-+|+++..+.
T Consensus 399 ----------------------------------------RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---------- 428 (559)
T KOG1155|consen 399 ----------------------------------------RAWYGLGQAYEIMKMHFYALYYFQKALELK---------- 428 (559)
T ss_pred ----------------------------------------HHHhhhhHHHHHhcchHHHHHHHHHHHhcC----------
Confidence 479999999999999999999999999773
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008039 200 LSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG 279 (580)
Q Consensus 200 ~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~ 279 (580)
|.+......+ |+++.+.++.++||.+|.+++... .
T Consensus 429 ----------------------------PnDsRlw~aL------------G~CY~kl~~~~eAiKCykrai~~~-----d 463 (559)
T KOG1155|consen 429 ----------------------------PNDSRLWVAL------------GECYEKLNRLEEAIKCYKRAILLG-----D 463 (559)
T ss_pred ----------------------------CCchHHHHHH------------HHHHHHhccHHHHHHHHHHHHhcc-----c
Confidence 3334444433 999999999999999999999973 3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLA-------LEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~-------ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.+..+|..+|..|.+++++.+|..+|.+.|+ .+|+-.++..-+|.-+.+.++|++|-.+...+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3678999999999999999999999999998 67888999999999999999999998888777
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.44 E-value=4.6e-11 Score=139.01 Aligned_cols=91 Identities=14% Similarity=0.007 Sum_probs=75.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALDTRALLL 326 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~~ra~~~ 326 (580)
..++..|++++|+..|++++... + ..|..+.. .+|.+|+.+|++++|+..|++++..+|.+ ...+..++.++
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~-~-~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEG-Q-IIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccC-C-CCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 34578899999999999998862 1 12333333 35999999999999999999999999876 46678888899
Q ss_pred HhcCChhHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l 345 (580)
...|++++|+..|+++...
T Consensus 321 ~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 321 LESENYPGALTVTAHTINN 339 (765)
T ss_pred HhcccHHHHHHHHHHHhhc
Confidence 9999999999999999765
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=6.3e-12 Score=121.10 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=73.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|.-++.+|+|++|...|.+|+.. |. .+..+..|-|+|.|.+++|+++.|..++.++|++||+++.+...++..+...
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~--P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALAD--PA-YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhC--CC-CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 55555666666666666666662 43 4556778899999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLK 343 (580)
Q Consensus 330 g~~~eAi~~~~~al 343 (580)
|+|-.|...+++..
T Consensus 187 ~~y~~Ar~~~~~~~ 200 (250)
T COG3063 187 GDYAPARLYLERYQ 200 (250)
T ss_pred ccchHHHHHHHHHH
Confidence 99999998888873
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=8.4e-12 Score=133.36 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=170.8
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
+.+|+.++-|...|++.. +.++=..|+..+.++|+++|.+-.++..+|.+|.-.|-=.+|+.++.+-| +..|..
T Consensus 313 kqdP~haeAW~~LG~~qa---ENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi---~~~p~y 386 (579)
T KOG1125|consen 313 KQDPQHAEAWQKLGITQA---ENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI---RNKPKY 386 (579)
T ss_pred hhChHHHHHHHHhhhHhh---hccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HhCccc
Confidence 478999999999998876 55566779999999999999999999999999999999999999999954 343322
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCC-CCCCCCCCCCCCCcccccch---HHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSG-GDSSDDSLGRDPSFKCFSVS---DLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~---~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
...+ ... ...+.. +. ..++.+ ++++.++..--.+++......+..||.+|.-.
T Consensus 387 ~~l~-----------------~a~~~~~~~~----~~--s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 387 VHLV-----------------SAGENEDFEN----TK--SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhcc-----------------ccCccccccC----Cc--CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 1111 000 000000 00 112222 23333333333344444455678899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
|+|+.|+.+|+.+|+.. |.+.....-+ |..
T Consensus 444 ~efdraiDcf~~AL~v~--------------------------------------Pnd~~lWNRL------------GAt 473 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK--------------------------------------PNDYLLWNRL------------GAT 473 (579)
T ss_pred hHHHHHHHHHHHHHhcC--------------------------------------CchHHHHHHh------------hHH
Confidence 99999999999999763 4444444433 999
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----------HHHHHHH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----------IQALDTR 322 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----------~~A~~~r 322 (580)
+-...+..+||..|++||++ .|....+.||+|.+++.+|-|++|+.++-.||.+.+.. -..|-.+
T Consensus 474 LAN~~~s~EAIsAY~rALqL-----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tL 548 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQL-----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTL 548 (579)
T ss_pred hcCCcccHHHHHHHHHHHhc-----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHH
Confidence 99999999999999999998 56688899999999999999999999999999997651 1344444
Q ss_pred HHHHHhcCChhHH
Q 008039 323 ALLLETIRCLPDC 335 (580)
Q Consensus 323 a~~~~~lg~~~eA 335 (580)
-.++..+++.|-+
T Consensus 549 R~als~~~~~D~l 561 (579)
T KOG1125|consen 549 RLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHcCCchHH
Confidence 4555555555533
No 41
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.9e-13 Score=140.28 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=57.2
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++|+.+|||+|||+||++||||+++.. +.|+++|+.|+|||+ +|+|+.
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~--------------------~~AeeKFKEI~eAYE-VLsD~e 61 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD--------------------KEAEEKFKEINEAYE-VLSDPE 61 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--------------------HHHHHHHHHHHHHHH-HhCCHH
Confidence 57999999999999999999999999999999999852 589999999999999 678887
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 62 KRa~YD 67 (371)
T COG0484 62 KRAAYD 67 (371)
T ss_pred HHHHhh
Confidence 444443
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.40 E-value=5.3e-11 Score=138.50 Aligned_cols=207 Identities=10% Similarity=-0.038 Sum_probs=159.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLE-LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~-~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
..|++++|+..|++++...|..+ .+....|.+++.+|++++|+..|++++ +..|.+...
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l---~~~p~~~~~----------------- 308 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF---YHPETIADL----------------- 308 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh---hcCCCCCCC-----------------
Confidence 56899999999999999975432 234446999999999999999999965 222211100
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
....+..|+.++...|++++|+..++++....|..
T Consensus 309 -----------------------------------------~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~---- 343 (765)
T PRK10049 309 -----------------------------------------SDEELADLFYSLLESENYPGALTVTAHTINNSPPF---- 343 (765)
T ss_pred -----------------------------------------ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce----
Confidence 00124456778899999999999999987653210
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
.. .. ..+...|++......+.. |..+...|++++|+..|.+++..
T Consensus 344 -------~~-~~-------------~~~~~~p~~~~~~a~~~~----------a~~l~~~g~~~eA~~~l~~al~~---- 388 (765)
T PRK10049 344 -------LR-LY-------------GSPTSIPNDDWLQGQSLL----------SQVAKYSNDLPQAEMRARELAYN---- 388 (765)
T ss_pred -------Ee-ec-------------CCCCCCCCchHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHh----
Confidence 00 00 001123554433222333 88999999999999999999997
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.+..+++++|.++...|++++|+..+++++.++|++..+++.+|.++..+|+|++|...++++++.
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45578999999999999999999999999999999999999999999999999999999999999887
No 43
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.40 E-value=8.8e-13 Score=132.56 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
+.....++++||.||++|.|++||.||+++|.+ .|+++..+.||+.+|+++++|..|..||+.||.||-.+++||
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~-----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY 168 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV-----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY 168 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc-----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 455666899999999999999999999999997 677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.+||.+...+|+..||..||+.+++|.
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 999999999999999999999999983
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.3e-11 Score=127.59 Aligned_cols=190 Identities=18% Similarity=0.094 Sum_probs=132.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+|+...-|...|..+. ..|++++|+..|+++|+++|++..++.++|.++...|++++|+++|++++ +..|+++
T Consensus 94 ~P~~~~a~~~lg~~~~---~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al---~~~P~~~- 166 (296)
T PRK11189 94 RPDMADAYNYLGIYLT---QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY---QDDPNDP- 166 (296)
T ss_pred CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCH-
Confidence 4455555666666665 67999999999999999999999999999999999999999999999966 3333222
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
....|. ..+...+++++|
T Consensus 167 -----------------------------------------------------------~~~~~~---~l~~~~~~~~~A 184 (296)
T PRK11189 167 -----------------------------------------------------------YRALWL---YLAESKLDPKQA 184 (296)
T ss_pred -----------------------------------------------------------HHHHHH---HHHHccCCHHHH
Confidence 000111 234457899999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
+..|.+..... +|+.- . . +...+..|+
T Consensus 185 ~~~l~~~~~~~-------------------------------------~~~~~---~-~------------~~~~~~lg~ 211 (296)
T PRK11189 185 KENLKQRYEKL-------------------------------------DKEQW---G-W------------NIVEFYLGK 211 (296)
T ss_pred HHHHHHHHhhC-------------------------------------Ccccc---H-H------------HHHHHHccC
Confidence 99997755321 11110 0 1 445555666
Q ss_pred HHHH--HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhcCC
Q 008039 259 YSEA--IRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-SCIQALDTRALLLETIRC 331 (580)
Q Consensus 259 y~eA--i~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-~~~~A~~~ra~~~~~lg~ 331 (580)
+.++ +..+.++++. .+...+....+|+++|.++..+|++++|+.+|++|++++| ++++..+.+.++....+.
T Consensus 212 ~~~~~~~~~~~~~~~~-~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 212 ISEETLMERLKAGATD-NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 6443 3333333221 1111234678999999999999999999999999999996 888888777766655443
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=7e-11 Score=113.93 Aligned_cols=203 Identities=15% Similarity=0.106 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
..+..|..|...+ .+||+..|...+++||+++|++..+|..+|.+|..+|..+-|-+.|++++ .++|++.
T Consensus 34 aa~arlqLal~YL---~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~G---- 103 (250)
T COG3063 34 AAKARLQLALGYL---QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNG---- 103 (250)
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCcc----
Confidence 4455788888888 79999999999999999999999999999999999999999999999966 3343322
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
..+.+.|..+|..|++++|+..
T Consensus 104 ----------------------------------------------------------dVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 104 ----------------------------------------------------------DVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred ----------------------------------------------------------chhhhhhHHHHhCCChHHHHHH
Confidence 1355679999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++... . -|..... +.+. |.+.++.|+++.
T Consensus 126 F~~Al~~P-------~-----------------------------Y~~~s~t--~eN~----------G~Cal~~gq~~~ 157 (250)
T COG3063 126 FERALADP-------A-----------------------------YGEPSDT--LENL----------GLCALKAGQFDQ 157 (250)
T ss_pred HHHHHhCC-------C-----------------------------CCCcchh--hhhh----------HHHHhhcCCchh
Confidence 99988531 0 0111222 1222 999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
|...|+++|++ +| .+......++..+++-|+|..|..++++-..--+-....+..-..+-..+|+-+.+-.+=.+
T Consensus 158 A~~~l~raL~~-dp----~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 158 AEEYLKRALEL-DP----QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHHHHh-Cc----CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999997 34 36667788999999999999999999999888888888888888888899999888777666
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
+..+
T Consensus 233 L~r~ 236 (250)
T COG3063 233 LQRL 236 (250)
T ss_pred HHHh
Confidence 6655
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=9.5e-12 Score=124.64 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
.++.|+-..+.+. .......|+..|.+.|+..|.+..++.-.|+++-.++++++|++.|+.++ +..|.+.
T Consensus 255 ~~dTfllLskvY~---ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl---k~~~~nv---- 324 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQ---RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL---KLHPINV---- 324 (478)
T ss_pred chhHHHHHHHHHH---HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH---hcCCccc----
Confidence 4444544444443 45778999999999999999999999999999999999999999999965 3322222
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
.++- .+|.-||.-|+.|-|+.+
T Consensus 325 ------------------------------EaiA----------------------------cia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 325 ------------------------------EAIA----------------------------CIAVGYFYDNNPEMALRY 346 (478)
T ss_pred ------------------------------eeee----------------------------eeeeccccCCChHHHHHH
Confidence 1121 246678999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++.+++.- .+... +.+. |.+++-.++|+-
T Consensus 347 YRRiLqmG~--------------------------------------~speL--f~Ni----------gLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 347 YRRILQMGA--------------------------------------QSPEL--FCNI----------GLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhcC--------------------------------------CChHH--HhhH----------HHHHHhhcchhh
Confidence 999998831 01111 1122 899999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
++..|.+|+... .+....+++|||+|.+....|++.-|-..|.-+|..||++.+++.++|.+-...|+.++|...|+.
T Consensus 377 ~L~sf~RAlsta--t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALSTA--TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhhc--cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999999973 334557899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
+..+
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 9766
No 47
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.38 E-value=3.4e-11 Score=119.70 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=138.3
Q ss_pred hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCC
Q 008039 54 ALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPS 133 (580)
Q Consensus 54 ~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 133 (580)
+.++..+..++.+|..++..|+|++|+..|++++ ...|.++
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~---~~~p~~~------------------------------------ 67 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALE---SRYPFSP------------------------------------ 67 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCch------------------------------------
Confidence 5677889999999999999999999999999965 2222111
Q ss_pred cccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCC
Q 008039 134 FKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVS 213 (580)
Q Consensus 134 ~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~ 213 (580)
....+++.+|.+++.+|++++|+..|+++++..
T Consensus 68 -----------------------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------ 100 (235)
T TIGR03302 68 -----------------------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH------------------------ 100 (235)
T ss_pred -----------------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------------------------
Confidence 001257889999999999999999999999773
Q ss_pred CCCCCCCCCCCCCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhccCCCCCcccHHH
Q 008039 214 NNHQTPPATPPRTMTESESV-SQLLSHIKLLLRRRTAAIAALDA--------GLYSEAIRHFSKIVDGRRGAPQGFLAEC 284 (580)
Q Consensus 214 ~~~~~~~~~~~~~dPd~~~~-~~ll~~~k~~~~~k~~G~~~~~~--------g~y~eAi~~y~~AL~~~~~~~~~~~a~~ 284 (580)
|++... ..++.. |..++.. |++++|+..|.+++.. .|.+ +....+
T Consensus 101 --------------p~~~~~~~a~~~~----------g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~-~~~~~a 154 (235)
T TIGR03302 101 --------------PNHPDADYAYYLR----------GLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNS-EYAPDA 154 (235)
T ss_pred --------------cCCCchHHHHHHH----------HHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCC-hhHHHH
Confidence 222221 123333 7777765 8999999999999996 3432 111111
Q ss_pred --------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 285 --------------YMHRAFAYRSSGRIAESIADCNKTLALEPS---CIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 285 --------------~~nra~a~~~lg~~~eAl~~~~~Al~ldP~---~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
..++|.+|+..|++.+|+..+.+++...|+ ..++++.+|.++..+|++++|+..++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 247899999999999999999999999665 56899999999999999999999888774
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=1.4e-10 Score=126.48 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=174.2
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALAL--------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSL 90 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l--------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l 90 (580)
.|.....+...+..+. .+|+|+.|+..+..||.+ .|.-...+...|.+|+.+++|.+|+.+|++++.-.
T Consensus 195 ~P~~~~~~~~La~~y~---~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYA---VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred CchHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3444444555555554 689999999999999999 88888888889999999999999999999987321
Q ss_pred hhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHH
Q 008039 91 KMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACC 170 (580)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~ 170 (580)
+. .+..+ .....-.+.+||.+|.
T Consensus 272 e~-----------------------~~G~~----------------------------------h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 272 EE-----------------------VFGED----------------------------------HPAVAATLNNLAVLYY 294 (508)
T ss_pred HH-----------------------hcCCC----------------------------------CHHHHHHHHHHHHHHh
Confidence 11 11111 0011125788999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008039 171 HLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 171 ~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G 250 (580)
..|++++|..+++++++|... . + -..+..+...+ .+.+
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~------~------~---------------------~~~~~~v~~~l---------~~~~ 332 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEK------L------L---------------------GASHPEVAAQL---------SELA 332 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHH------h------h---------------------ccChHHHHHHH---------HHHH
Confidence 999999999999999998432 0 0 01223332222 2238
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccC--C-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCcHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRR--G-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--------EPSCIQAL 319 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~--~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--------dP~~~~A~ 319 (580)
..+...++|++|+.+|.+++++.. + ..++..+..+.|+|.+|+++|+|.+|.+.+.+||.+ ++.....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 899999999999999999988732 2 223356889999999999999999999999999977 34557889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+|..+.+++.+.+|...|.+++.+.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999999999999999998885
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=2.2e-10 Score=124.93 Aligned_cols=230 Identities=17% Similarity=0.112 Sum_probs=172.0
Q ss_pred ccccchhhhHHHHHH-HHHHHHHhhChhhHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHccChHHHHHHHH
Q 008039 14 HWWLSNRKIVDKYIR-DARTLIATQEHSEIASALSLLDAALA--------LSPRLELALELKARSLLYLRRFKDVADMLQ 84 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~Al~~~~~Al~--------l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~ 84 (580)
+|.+.++ .|...++ .|..+. ..+++.+|+.+|.+||. .+|..+..+.++|.+|...|+|++|..+|+
T Consensus 232 ~~G~~hl-~va~~l~~~a~~y~---~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e 307 (508)
T KOG1840|consen 232 TSGLKHL-VVASMLNILALVYR---SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE 307 (508)
T ss_pred ccCccCH-HHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 4444444 3444444 555555 68999999999999997 467888899999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHH
Q 008039 85 DYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLV 164 (580)
Q Consensus 85 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~ 164 (580)
+++.-.+. ++... ..+|.+ .+..
T Consensus 308 ~Al~I~~~-----------------------~~~~~----------------------~~~v~~------------~l~~ 330 (508)
T KOG1840|consen 308 RALEIYEK-----------------------LLGAS----------------------HPEVAA------------QLSE 330 (508)
T ss_pred HHHHHHHH-----------------------hhccC----------------------hHHHHH------------HHHH
Confidence 97732111 00000 112222 3567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
++.++..++++++|+.+|++++++... .+ -+++..+.....
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~------------~~---------------------g~~~~~~a~~~~------ 371 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLD------------AP---------------------GEDNVNLAKIYA------ 371 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHh------------hc---------------------cccchHHHHHHH------
Confidence 899999999999999999999988421 00 123322222221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCC
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-------EPS 314 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-------dP~ 314 (580)
+.|..+++.|+|.+|.+.|.+||.... ..........+.++|..|..++++.+|...|.+++.+ .|+
T Consensus 372 ---nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 372 ---NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred ---HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 129999999999999999999999731 2224445678899999999999999999999998876 456
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
-.-.|.++|.+|..+|+|++|+...++++...
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999997664
No 50
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.33 E-value=1.7e-11 Score=113.25 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=88.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+ .|.+..+|+++|.++..+|++++|+..|.+++.++|+++.+++++|.++..+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 99999999999999999999997 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999888
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5.5e-11 Score=126.72 Aligned_cols=203 Identities=15% Similarity=0.136 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
-|+..|--++ ..|++.+|-..|.+|-.++|....+|...|.++...++.+.|+.+|..+-+.
T Consensus 314 sW~aVg~YYl---~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--------------- 375 (611)
T KOG1173|consen 314 SWFAVGCYYL---MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--------------- 375 (611)
T ss_pred chhhHHHHHH---HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh---------------
Confidence 3445554444 4578888888888888888888888888888888888888888888774421
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
.+.. ....+.+|.-|..+++++-|-.+|..
T Consensus 376 ------------~~G~--------------------------------------hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 376 ------------MPGC--------------------------------------HLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred ------------ccCC--------------------------------------cchHHHHHHHHHHhccHHHHHHHHHH
Confidence 1100 11355578888889999999999988
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
++.++| .+.-+ +.+.|.++|..+.|.+|+.
T Consensus 406 A~ai~P--------------------------------------~Dplv------------~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 406 ALAIAP--------------------------------------SDPLV------------LHELGVVAYTYEEYPEALK 435 (611)
T ss_pred HHhcCC--------------------------------------Ccchh------------hhhhhheeehHhhhHHHHH
Confidence 887642 11111 2233999999999999999
Q ss_pred HHHHHHhccCC--CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 265 HFSKIVDGRRG--APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 265 ~y~~AL~~~~~--~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
+|..++..... +..+.-..++.|+|.++.+++++.+||..++++|.+.|.++.+|...|-+|..+|+++.|+..|.++
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999853211 1123456779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 008039 343 KLL 345 (580)
Q Consensus 343 l~l 345 (580)
+-+
T Consensus 516 L~l 518 (611)
T KOG1173|consen 516 LAL 518 (611)
T ss_pred Hhc
Confidence 877
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.33 E-value=5.9e-11 Score=132.98 Aligned_cols=221 Identities=14% Similarity=0.127 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCC
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGG 121 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 121 (580)
++.|...|..++.-+|.+..++..+|.+.+..++|..|+.+|++++ ..+|... ++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al---~inp~~~---------------------aD- 200 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKAL---RINPACK---------------------AD- 200 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHH---hcCcccC---------------------CC-
Confidence 6888999999999999999999999999999999999999999855 3433211 11
Q ss_pred CCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh-hccc
Q 008039 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE-SISL 200 (580)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~-~~~~ 200 (580)
.-+.+|.|++.+|+.+.|+..|+++++|+|...+.- .+..
T Consensus 201 ---------------------------------------~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~ 241 (1018)
T KOG2002|consen 201 ---------------------------------------VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGE 241 (1018)
T ss_pred ---------------------------------------ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence 012346777888888888888888888765322210 0000
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 201 SDDSFPFSKFPVSNNHQT----PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 201 ~~d~~~~~~l~~~~~~~~----~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
..-.|. ..++.. .....-..+|.+..+..++ ++-+|-.|+|..+...+..++.. ..
T Consensus 242 ~~l~~~------d~~s~~~~~~ll~~ay~~n~~nP~~l~~L------------An~fyfK~dy~~v~~la~~ai~~--t~ 301 (1018)
T KOG2002|consen 242 VDLNFN------DSDSYKKGVQLLQRAYKENNENPVALNHL------------ANHFYFKKDYERVWHLAEHAIKN--TE 301 (1018)
T ss_pred HHHHcc------chHHHHHHHHHHHHHHhhcCCCcHHHHHH------------HHHHhhcccHHHHHHHHHHHHHh--hh
Confidence 000000 000000 0000001123444444444 77888889999999888888885 23
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC-IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~-~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+.+..+..+|++|.+|..+|+|+.|..+|.+++..+|++ .-+++.+|+++...|++++|+.+|+++++.+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 355667778899999999999999999999999988887 8888899999999999999999999887764
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.32 E-value=2.8e-11 Score=111.74 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++.+|.+++..|++++|+..|++++.+ +|++..+...+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------------~P~~~~a~~~l---- 64 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------------------------------------QPWSWRAHIAL---- 64 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------------------CCCcHHHHHHH----
Confidence 556899999999999999999999876 35555544443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|.++...|+|++|+..|.+++.+ .|.++.+++++|.|+..+|++++|+..|.++|.++|+++..+..
T Consensus 65 --------g~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 65 --------AGTWMMLKEYTTAINFYGHALML-----DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred --------HHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999997 45588999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 008039 322 RALLLETIR 330 (580)
Q Consensus 322 ra~~~~~lg 330 (580)
+|.+...++
T Consensus 132 ~~~~~~~l~ 140 (144)
T PRK15359 132 RQNAQIMVD 140 (144)
T ss_pred HHHHHHHHH
Confidence 999886543
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.30 E-value=6.7e-11 Score=134.48 Aligned_cols=131 Identities=10% Similarity=-0.043 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..+++||.+....|.+++|..+++++++++ |++..+...+
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------------------------------------Pd~~~a~~~~-- 126 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRF--------------------------------------PDSSEAFILM-- 126 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------------------------------------CCcHHHHHHH--
Confidence 468899999999999999999999999873 7778777666
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
+.++++.+++++|+..+.+++.. .|.++..++++|.++..+|++++|+..|++++..+|++..++
T Consensus 127 ----------a~~L~~~~~~eeA~~~~~~~l~~-----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~ 191 (694)
T PRK15179 127 ----------LRGVKRQQGIEAGRAEIELYFSG-----GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY 191 (694)
T ss_pred ----------HHHHHHhccHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence 89999999999999999999997 466999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+|.++..+|+.++|...|++++++
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999888
No 55
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.30 E-value=1.1e-12 Score=131.91 Aligned_cols=227 Identities=11% Similarity=-0.004 Sum_probs=167.5
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 29 DARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 29 ~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
+|..+| .+|.|++|+++|.+++.++|.++.++.+||.+|+.+++|.-|..+|..+|..
T Consensus 103 ~GN~yF---KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------------------- 160 (536)
T KOG4648|consen 103 RGNTYF---KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL------------------- 160 (536)
T ss_pred hhhhhh---hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-------------------
Confidence 334455 5899999999999999999999999999999999999999999999997721
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
.+.. .-+|...|.+.+.+|+.++|.+.++.+++|
T Consensus 161 ----------------------------------d~~Y------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 161 ----------------------------------DKLY------------VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred ----------------------------------hHHH------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 0111 125778899999999999999999999988
Q ss_pred HHHh--hhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008039 189 ATAA--FRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHF 266 (580)
Q Consensus 189 ~~~~--~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y 266 (580)
.|.. .+.... ...+. ... ...+++.|....+.+ ........+..|+.+++.|.|+-+|.+|
T Consensus 195 EP~~~ELkK~~a--~i~Sl------~E~------~I~~KsT~G~~~A~Q---~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 195 EPKNIELKKSLA--RINSL------RER------KIATKSTPGFTPARQ---GMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred CcccHHHHHHHH--Hhcch------Hhh------hHHhhcCCCCCcccc---chhhhccccCcchhhhhhhccccceeEe
Confidence 5431 111100 00000 000 000111111111111 0112334566699999999999999999
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 267 SKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 267 ~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
...+...+ .+..+-.+ +..|.+..++..++.+|.+++-++|.+.++..+++.+-.-+|...|+..+++.++.+.
T Consensus 258 ~~~~A~~~-----~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 258 VSPRATID-----DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred eccccccC-----ccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence 98887532 13333344 8889999999999999999999999999999999999999999999999999998873
No 56
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.7e-12 Score=128.00 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=59.3
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...|||++|||++++++.+||+|||+|||++||||+++. +.|.+.|+.|+.||+ |++|+
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--------------------p~A~e~F~~in~AYE-VLsDp 72 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--------------------PNANEKFKEINAAYE-VLSDP 72 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--------------------HHHHHHHHHHHHHHH-HhcCH
Confidence 467999999999999999999999999999999999885 478999999999999 67888
Q ss_pred hhHHHHHHH
Q 008039 474 MDEEAAEKR 482 (580)
Q Consensus 474 ~~~~~~~~~ 482 (580)
-.|..+.+-
T Consensus 73 ekRk~YD~~ 81 (336)
T KOG0713|consen 73 EKRKHYDTY 81 (336)
T ss_pred HHHHHHHhh
Confidence 755555433
No 57
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.29 E-value=6.9e-10 Score=124.53 Aligned_cols=212 Identities=16% Similarity=0.143 Sum_probs=171.3
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
-+|+-|..++-.+...+...+...+..++.++.++..++|.+|.++..+|.-++..|.|.-|......++....-
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~----- 302 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN----- 302 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh-----
Confidence 467778888888877777777788999999999999999999999999999999999999999988887732100
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
+.++ ...+|.+|.+|..+|++++
T Consensus 303 ----------------------------------------------~~~~-----------aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 303 ----------------------------------------------KSIK-----------AESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred ----------------------------------------------hHHH-----------HHHHHHHHHHHHhhccHHH
Confidence 0011 1247889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|..+|..+++.+ .+.|.+ .++.. |..++..|
T Consensus 326 A~~yY~~s~k~~------------~d~~~l---------------------------~~~Gl----------gQm~i~~~ 356 (1018)
T KOG2002|consen 326 AFKYYMESLKAD------------NDNFVL---------------------------PLVGL----------GQMYIKRG 356 (1018)
T ss_pred HHHHHHHHHccC------------CCCccc---------------------------cccch----------hHHHHHhc
Confidence 999999988653 222222 22223 89999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChh
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG----RIAESIADCNKTLALEPSCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg----~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~ 333 (580)
+++.|+.+|.+++.. .|.+.....-+|..|...+ ..+.|.....++++..|.+..+|..+|.++....-+-
T Consensus 357 dle~s~~~fEkv~k~-----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQ-----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred hHHHHHHHHHHHHHh-----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence 999999999999997 3457788888898888876 6788999999999999999999999999997776666
Q ss_pred HHHHHHHHHHHHH
Q 008039 334 DCLHDLEHLKLLY 346 (580)
Q Consensus 334 eAi~~~~~al~l~ 346 (580)
. +..|.+|+.+.
T Consensus 432 s-L~~~~~A~d~L 443 (1018)
T KOG2002|consen 432 S-LDAYGNALDIL 443 (1018)
T ss_pred H-HHHHHHHHHHH
Confidence 6 99999999775
No 58
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=4.1e-11 Score=119.76 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
...+.+-.+|-.++ ..++|.+|+..|++||+++|.++.+|.+||.+|.+||.|+.|+++|+.+| .++|..
T Consensus 79 ~~AE~LK~eGN~~m---~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~y---- 148 (304)
T KOG0553|consen 79 ALAESLKNEGNKLM---KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHY---- 148 (304)
T ss_pred HHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHH----
Confidence 34445556666666 67999999999999999999999999999999999999999999999966 222211
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
.-+|..||.+|+.+|++++|++
T Consensus 149 ----------------------------------------------------------skay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 149 ----------------------------------------------------------SKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHccCcHHHHHH
Confidence 1258889999999999999999
Q ss_pred HHHHHHHH
Q 008039 181 LLQTGKRL 188 (580)
Q Consensus 181 ~l~~al~l 188 (580)
.|++++.|
T Consensus 171 aykKaLel 178 (304)
T KOG0553|consen 171 AYKKALEL 178 (304)
T ss_pred HHHhhhcc
Confidence 99999976
No 59
>PLN02789 farnesyltranstransferase
Probab=99.26 E-value=7.6e-10 Score=115.33 Aligned_cols=188 Identities=10% Similarity=-0.023 Sum_probs=147.9
Q ss_pred chhhhHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCh--HHHHHHHHhhhhhhhhcC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHS-EIASALSLLDAALALSPRLELALELKARSLLYLRRF--KDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~--~eAi~~~~~~l~~l~~~~ 94 (580)
.||+...-|...+..+. ..| ++.+++..+++++..+|.+..+|..|+.++..++++ +++++++.++| ..+|
T Consensus 66 lnP~~ytaW~~R~~iL~---~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal---~~dp 139 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLE---ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKIL---SLDA 139 (320)
T ss_pred HCchhHHHHHHHHHHHH---HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHH---HhCc
Confidence 46666666666666665 345 689999999999999999999999999999999984 67888888855 2222
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL 174 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~ 174 (580)
. ...+|..+|.++..+|+
T Consensus 140 k--------------------------------------------------------------Ny~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 140 K--------------------------------------------------------------NYHAWSHRQWVLRTLGG 157 (320)
T ss_pred c--------------------------------------------------------------cHHHHHHHHHHHHHhhh
Confidence 1 12467789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 175 MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 175 ~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
+++|+++++++++++ |.+..+.... |.++.
T Consensus 158 ~~eeL~~~~~~I~~d--------------------------------------~~N~sAW~~R------------~~vl~ 187 (320)
T PLN02789 158 WEDELEYCHQLLEED--------------------------------------VRNNSAWNQR------------YFVIT 187 (320)
T ss_pred HHHHHHHHHHHHHHC--------------------------------------CCchhHHHHH------------HHHHH
Confidence 999999999998763 4444444333 55554
Q ss_pred Hc---CCH----HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 255 DA---GLY----SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 255 ~~---g~y----~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
+. |.+ ++++.+..++|.+ .|.+..+|++++.++.. +++..+|+..|.+++..+|+++.|+-.++
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~ 262 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLL 262 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHh-----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHH
Confidence 44 333 5788888899997 45578899999999988 56778899999999999999999999999
Q ss_pred HHHHh
Q 008039 324 LLLET 328 (580)
Q Consensus 324 ~~~~~ 328 (580)
.+|..
T Consensus 263 d~~~~ 267 (320)
T PLN02789 263 DLLCE 267 (320)
T ss_pred HHHHh
Confidence 99986
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.25 E-value=1.2e-09 Score=117.76 Aligned_cols=225 Identities=12% Similarity=0.115 Sum_probs=156.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH-Hhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER-VKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~l 116 (580)
..|+++.|+..++++++.+|+++.++...+.+|+..|++++|++.+....+.....+.. ...++... ..+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~---------~~~l~~~a~~~l 235 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH---------RAMLEQQAWIGL 235 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH---------HHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999998887755322111100 00010000 001
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
+..... +. +...+ ..+...+.... ......+..++..+...|+.++|...++++++.
T Consensus 236 ~~~~~~--------~~-----~~~~l-~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-------- 292 (398)
T PRK10747 236 MDQAMA--------DQ-----GSEGL-KRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-------- 292 (398)
T ss_pred HHHHHH--------hc-----CHHHH-HHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 100000 00 00111 11111111100 112234567899999999999999999988753
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
.|++ ....++ .....+++++++....+.++.
T Consensus 293 ------------------------------~~~~-~l~~l~--------------~~l~~~~~~~al~~~e~~lk~---- 323 (398)
T PRK10747 293 ------------------------------QYDE-RLVLLI--------------PRLKTNNPEQLEKVLRQQIKQ---- 323 (398)
T ss_pred ------------------------------CCCH-HHHHHH--------------hhccCCChHHHHHHHHHHHhh----
Confidence 1222 222222 223559999999999999996
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++.+++.+|..++..|+|++|..+++++++++|++.. +..++.++..+|+.++|...|++++.+
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5668899999999999999999999999999999998655 668999999999999999999999877
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.24 E-value=1.3e-10 Score=123.16 Aligned_cols=95 Identities=24% Similarity=0.238 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
++..|+.+|..|+|.+|+.+|+++|.+ .|.+..+|+++|.+|..+|++++|+.+|.++|.++|++..+|+++|.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 455699999999999999999999997 445789999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
|..+|+|++|+..|++++++
T Consensus 80 ~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999988
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.23 E-value=1.5e-09 Score=121.08 Aligned_cols=292 Identities=15% Similarity=0.067 Sum_probs=173.9
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
-||+-.+.|...+.... ++|.+..|.-+|++||..+|.+-.+++.|+..|..+|.+..|++.|.++++.+. |.|+
T Consensus 202 L~p~d~e~W~~ladls~---~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~ 276 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSE---QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDI 276 (895)
T ss_pred cCCCChHHHHHHHHHHH---hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhH
Confidence 46666677777775554 688899999999999999999999999999999999999999999998664422 1111
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
.. -..+-+..++...... +-+-+-+.+..-++...+.....-+..++..+.....++.
T Consensus 277 er------~~d~i~~~~~~~~~~~----------------~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 277 ER------IEDLIRRVAHYFITHN----------------ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred HH------HHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHH
Confidence 00 0000000000000000 0000011111222222222223335567778888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC----------CCCC-ChHHHHHHHHH------H
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPP----------RTMT-ESESVSQLLSH------I 240 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~----------~~dP-d~~~~~~ll~~------~ 240 (580)
|+..........+. ....+|..+.+-.......-+.+...+..+ +++- +...+...+-. .
T Consensus 335 ~~~~i~~~~~r~~e---~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 335 ALMKIVDDRNRESE---KDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred hhHHHHHHhccccC---CChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 87766554431100 000011000000000000000011111111 0000 00111110000 0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
....-+.+-+.++...|+|.+|+..|..++.. ++. .+..+|+++|.||..+|.++.|+..|.++|.++|++.++.+
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~---~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGY---QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccc---cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 11222456688999999999999999999985 332 25889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al 343 (580)
.++.++..+|++++|++.++...
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999888763
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.23 E-value=1.4e-09 Score=117.68 Aligned_cols=228 Identities=12% Similarity=0.078 Sum_probs=155.5
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhH-HHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLS-RERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l 116 (580)
..|+++.|+..++..++.+|+++.++...+.+++..|++++|++.+...++. ...++ .....+. .....+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~---~~~~~------~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA---GLFDD------EEFADLEQKAEIGL 235 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc---CCCCH------HHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999888875522 11000 0000000 000001
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEK--EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~--~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r 194 (580)
+.... .+. ++. .+.......+.. .....++.+|..+...|++++|+..++++++..
T Consensus 236 l~~~~--------~~~-----~~~----~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----- 293 (409)
T TIGR00540 236 LDEAM--------ADE-----GID----GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----- 293 (409)
T ss_pred HHHHH--------Hhc-----CHH----HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----
Confidence 10000 000 000 111111112211 233456778999999999999999999998762
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVS-QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~-~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
|++.... ..+. ....+..++...++..++++++.
T Consensus 294 ---------------------------------pd~~~~~~~~l~-----------~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 294 ---------------------------------GDDRAISLPLCL-----------PIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred ---------------------------------CCcccchhHHHH-----------HhhhcCCCChHHHHHHHHHHHHh-
Confidence 3332211 1111 22334568889999999999996
Q ss_pred CCCCCcccH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 274 RGAPQGFLA--ECYMHRAFAYRSSGRIAESIADCN--KTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 274 ~~~~~~~~a--~~~~nra~a~~~lg~~~eAl~~~~--~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.++ .++..+|.+++++|+|++|..+++ .+++.+|+... +..+|.++..+|+.++|...|++++.+.
T Consensus 329 ----~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 329 ----VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred ----CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44466 888899999999999999999999 68889998877 5599999999999999999999998774
No 64
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.21 E-value=3.4e-10 Score=110.21 Aligned_cols=101 Identities=19% Similarity=0.104 Sum_probs=91.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH-HHcCC--hHHHHHH
Q 008039 228 TESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAY-RSSGR--IAESIAD 304 (580)
Q Consensus 228 Pd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~-~~lg~--~~eAl~~ 304 (580)
|++......+ |..+...|+|++|+..|.+++.+ .|.+..+++++|.++ ...|+ +++|+..
T Consensus 70 P~~~~~w~~L------------g~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 70 PQNSEQWALL------------GEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred CCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 5566555554 99999999999999999999998 455899999999985 77788 5999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 305 CNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 305 ~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++++++|+++.+++.+|.++..+|+|++|+..|++++++
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888
No 65
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=2.6e-10 Score=105.21 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=88.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|++++|...|.-.+.+ +|.++..|+|+|.|+..+|+|.+||..|.+|+.++|+++.++++.|.|++.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 99999999999999999999998 5668999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~ 346 (580)
|+.+.|...|+.++.+.
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999884
No 66
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.2e-11 Score=118.81 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
+..+++.||.+|+.++|..|+.+|+++|... -.+...++.+|.|||.|.+.+|+|..||.||.+++.++|++.+|+++-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKK-CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4667888999999999999999999999963 334567999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|.|+..+.+|.+|+...+..++++
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999988876664
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.17 E-value=4e-09 Score=122.19 Aligned_cols=200 Identities=14% Similarity=0.159 Sum_probs=157.2
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.+|..++.....+...+ .+||+..|+..|.++++.+|.++.++.-.+.++..+|++++|+..|++++ .|++.
T Consensus 29 ~~p~~~~~~y~~aii~~---r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-----~p~n~ 100 (822)
T PRK14574 29 VNPAMADTQYDSLIIRA---RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNI 100 (822)
T ss_pred cCccchhHHHHHHHHHH---hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCC
Confidence 35666676667776666 79999999999999999999997555578888889999999999999965 11111
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
.......+|.++..+|++++
T Consensus 101 ------------------------------------------------------------~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 101 ------------------------------------------------------------SSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred ------------------------------------------------------------CHHHHHHHHHHHHHcCCHHH
Confidence 01123345789999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+++|+++++. +|++..+...+ +..+...+
T Consensus 121 Aiely~kaL~~--------------------------------------dP~n~~~l~gL------------a~~y~~~~ 150 (822)
T PRK14574 121 ALALWQSSLKK--------------------------------------DPTNPDLISGM------------IMTQADAG 150 (822)
T ss_pred HHHHHHHHHhh--------------------------------------CCCCHHHHHHH------------HHHHhhcC
Confidence 99999999876 35555544332 77888999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++++|+..+.+++.. +| .+. .+..++.++..++++.+|+..++++++++|++.++++.+..++...|-.+-|++
T Consensus 151 q~~eAl~~l~~l~~~-dp----~~~-~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 151 RGGVVLKQATELAER-DP----TVQ-NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred CHHHHHHHHHHhccc-Cc----chH-HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999996 23 222 234456666667888789999999999999999999999999999999999887
Q ss_pred HHHH
Q 008039 338 DLEH 341 (580)
Q Consensus 338 ~~~~ 341 (580)
...+
T Consensus 225 l~~~ 228 (822)
T PRK14574 225 LAKE 228 (822)
T ss_pred HHHh
Confidence 6664
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.1e-09 Score=111.40 Aligned_cols=273 Identities=14% Similarity=0.111 Sum_probs=187.1
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
..+..++ ..+++.+.+.+++..++++|-+...+-.+-.||..+|+..+=..+-.+.+
T Consensus 249 ~~ad~~y---~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV-------------------- 305 (611)
T KOG1173|consen 249 EKADRLY---YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV-------------------- 305 (611)
T ss_pred HHHHHHH---HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH--------------------
Confidence 4444444 45677777777777777777776666665557777776665443322211
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
++. |.++ -.|+..|.-|...|++.+|..+|.++-.
T Consensus 306 -------~~y------------------------------------P~~a--~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 306 -------DLY------------------------------------PSKA--LSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred -------HhC------------------------------------CCCC--cchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 111 1111 1477889999999999999999999887
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008039 188 LATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFS 267 (580)
Q Consensus 188 l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~ 267 (580)
+ ||..+...-.+ |..+--.|..++|+.+|.
T Consensus 341 l--------------------------------------D~~fgpaWl~f------------ghsfa~e~EhdQAmaaY~ 370 (611)
T KOG1173|consen 341 L--------------------------------------DPTFGPAWLAF------------GHSFAGEGEHDQAMAAYF 370 (611)
T ss_pred c--------------------------------------CccccHHHHHH------------hHHhhhcchHHHHHHHHH
Confidence 6 35556655555 889999999999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
.|-++- +....-+..+|.-|..+++++-|-..|..|+.+.|+++-.+..+|.+....+.|.+|+..|+.++...+
T Consensus 371 tAarl~-----~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 371 TAARLM-----PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHhc-----cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 999973 223333556799999999999999999999999999999999999999999999999999999986643
Q ss_pred HhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhcccCC-CCHHHHHHHHHHHHhhcCC
Q 008039 348 AILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRG-CSRSELERAHLLLSLRHKP 426 (580)
Q Consensus 348 ~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLgv~~~-a~~~ei~~ayr~lal~~hP 426 (580)
..+.. .+.|.+-..--+-+.++++.....+...++.+.. .....++|..+|.-.. ..--+-..-|.+.||-..|
T Consensus 446 ~~~~e----~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 446 SVLNE----KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hcccc----ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 32211 1246652221234445566666666555543333 2455566666664211 1111222337888999999
Q ss_pred CC
Q 008039 427 DK 428 (580)
Q Consensus 427 Dk 428 (580)
|.
T Consensus 521 ~n 522 (611)
T KOG1173|consen 521 DN 522 (611)
T ss_pred cc
Confidence 86
No 69
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.7e-10 Score=111.48 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
+..+++.||.+|...+|..||.+|.++|.+ .|..+..|.|++.||+++++|+.+..+|.+|++++|+.+++++.+
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~-----nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI-----NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc-----CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence 356678899999999999999999999998 466789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|.+++....|++||..++++..+.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999998884
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.14 E-value=4.5e-09 Score=119.65 Aligned_cols=180 Identities=16% Similarity=0.073 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQE-HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~-~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
.+.+.+++..+.... -....+++..+.....--|.++.++.++|.++..+|+++||...++.++ +.+|++.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~----- 120 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSS----- 120 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcH-----
Confidence 345555655553211 1233444444444555679999999999999999999999999999944 4555433
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
-+.+.++.++..++++++|+..+
T Consensus 121 ---------------------------------------------------------~a~~~~a~~L~~~~~~eeA~~~~ 143 (694)
T PRK15179 121 ---------------------------------------------------------EAFILMLRGVKRQQGIEAGRAEI 143 (694)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhccHHHHHHHH
Confidence 14667899999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEA 262 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eA 262 (580)
++++.. +|++......+ |.++.+.|+|++|
T Consensus 144 ~~~l~~--------------------------------------~p~~~~~~~~~------------a~~l~~~g~~~~A 173 (694)
T PRK15179 144 ELYFSG--------------------------------------GSSSAREILLE------------AKSWDEIGQSEQA 173 (694)
T ss_pred HHHhhc--------------------------------------CCCCHHHHHHH------------HHHHHHhcchHHH
Confidence 998865 36666555554 8999999999999
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 263 IRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 263 i~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
+.+|.+++.. .|....++.++|.++..+|+.++|...|.+||....+-.+.|.++.
T Consensus 174 ~~~y~~~~~~-----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 174 DACFERLSRQ-----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999999983 4558899999999999999999999999999999887778766553
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=9.1e-09 Score=113.40 Aligned_cols=248 Identities=17% Similarity=0.095 Sum_probs=163.9
Q ss_pred hChhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC----C----Cc---
Q 008039 37 QEHSEIASALSLLDAALALSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS----S----DS--- 104 (580)
Q Consensus 37 ~~~~d~~~Al~~~~~Al~l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~----~----~~--- 104 (580)
..+++..+|++...++|+++| +++.+|.++|.++-..+||.+|+...+.++. ..|+|.+--- - ..
T Consensus 489 A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~---E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 489 AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE---EFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HhhhhhhhchhhhhhhhhcccHHH
Confidence 357899999999999999955 7789999999999999999999999888663 2221110000 0 00
Q ss_pred h----hhHh--HH---------HHHhhh--cCCCCCCCCCCCCCCCcccccchHHHHHHHH-----h-------hhcccc
Q 008039 105 S----SQQL--SR---------ERVKLL--HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMA-----G-------LCRNCE 155 (580)
Q Consensus 105 ~----~~~~--~~---------~~~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-----~-------l~~~~~ 155 (580)
+ ...+ ++ .+.+++ ..+.+.... .+.+..-.+ ..+-+.+-. + ..-.+.
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~-q~~~a~s~s---r~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALS-QPTDAISTS---RYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcc-cccccchhh---HHHHHHHHhhhhhcccccccCcccccCC
Confidence 0 0000 00 000000 000000000 000000000 000000000 0 000111
Q ss_pred ccchh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008039 156 KEGQW-----RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES 230 (580)
Q Consensus 156 ~~~~~-----~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~ 230 (580)
+...| .|...+..+...+..++|..++.++..+. |
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------------------------------------~-- 681 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------------------------------------P-- 681 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------------------------------------h--
Confidence 22222 35667888888899999998888877652 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHH--HHHHH
Q 008039 231 ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIA--DCNKT 308 (580)
Q Consensus 231 ~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~--~~~~A 308 (580)
.....++.. |..+...|++.+|.+.|..|+.+ +|....+...+|.++...|+..-|.. ....+
T Consensus 682 l~~~~~~~~----------G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 682 LSASVYYLR----------GLLLEVKGQLEEAKEAFLVALAL-----DPDHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred hhHHHHHHh----------hHHHHHHHhhHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 223333333 99999999999999999999998 34467788899999999999888888 99999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 309 LALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 309 l~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++||.+.++|+.+|.++..+|+.++|..+|+.+++|.
T Consensus 747 lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 747 LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999994
No 72
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5e-10 Score=108.51 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-------CCC------CcccHHHHHHHHHHHHHcCChHHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-------GAP------QGFLAECYMHRAFAYRSSGRIAESIADC 305 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-------~~~------~~~~a~~~~nra~a~~~lg~~~eAl~~~ 305 (580)
+++.+..+..+||.+|+.|+|.+|+..|..||...+ |.. ......++.|.|+|++..|+|.++++.|
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 455666778889999999999999999999977421 110 1235678999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 306 NKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 306 ~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+..|..+|++.+|||+||.++...-+..+|..||.+++++.
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999884
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=7.7e-09 Score=108.98 Aligned_cols=91 Identities=16% Similarity=-0.025 Sum_probs=80.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI----QALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~----~A~~~ra~~ 325 (580)
|..+...|++++|+..|.+++++ .|.+..++..+|.++...|++++|+..+.+++.+.|..+ ..++.+|.+
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~-----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALEL-----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 88999999999999999999997 344678899999999999999999999999999987432 456789999
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
+...|++++|+..|++++..
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHCCCHHHHHHHHHHHhcc
Confidence 99999999999999998543
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.10 E-value=4.2e-09 Score=102.56 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
.++.++++..|.++|..+|.+..+|..+|.+++.+|+|++|+..|++++ ++.|++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---~l~P~~~--------------------- 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL---QLRGENA--------------------- 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCH---------------------
Confidence 5678889999999999999999999999999999999999999999855 3333222
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHH-HhcCC--HHHHHHHHHHHHHHHHHhhhh
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC-CHLGL--MEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~-~~lG~--~eeAi~~l~~al~l~~~~~r~ 195 (580)
..++.+|.++ +..|+ .++|+..|++++++
T Consensus 108 -----------------------------------------~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~------- 139 (198)
T PRK10370 108 -----------------------------------------ELYAALATVLYYQAGQHMTPQTREMIDKALAL------- 139 (198)
T ss_pred -----------------------------------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------
Confidence 2466778875 66677 48999999988876
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+|++..+..++ |..+++.|+|++|+.+|++++++.+|
T Consensus 140 -------------------------------dP~~~~al~~L------------A~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 140 -------------------------------DANEVTALMLL------------ASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred -------------------------------CCCChhHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35555555554 88889999999999999999887543
No 75
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.10 E-value=1.2e-09 Score=98.85 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=87.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|++++.. .|.+..+++++|.++..+|++++|+..+++++.++|+++..++.+|.++..+
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 99999999999999999999997 3457899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999888
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=9.7e-09 Score=103.39 Aligned_cols=205 Identities=15% Similarity=0.091 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
.|.+-..-|+ .+..++|+++|-..+..+|..-.++..+|..+...|..+.||.+-+..+ ..|+.+
T Consensus 38 ~Yv~GlNfLL----s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~----~spdlT------- 102 (389)
T COG2956 38 DYVKGLNFLL----SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL----ESPDLT------- 102 (389)
T ss_pred HHHhHHHHHh----hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh----cCCCCc-------
Confidence 4544444444 4567899999999999999999999999999999999999999877633 111111
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
..++ ..+.+.||+=|...|-+|.|...|..
T Consensus 103 -------------------------------------~~qr-------------~lAl~qL~~Dym~aGl~DRAE~~f~~ 132 (389)
T COG2956 103 -------------------------------------FEQR-------------LLALQQLGRDYMAAGLLDRAEDIFNQ 132 (389)
T ss_pred -------------------------------------hHHH-------------HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 0122 23567899999999999999999987
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAI 263 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi 263 (580)
.... |+. ..+...+ -++|-...+|++||
T Consensus 133 L~de---------------------------------------~efa~~AlqqL------------l~IYQ~treW~KAI 161 (389)
T COG2956 133 LVDE---------------------------------------GEFAEGALQQL------------LNIYQATREWEKAI 161 (389)
T ss_pred Hhcc---------------------------------------hhhhHHHHHHH------------HHHHHHhhHHHHHH
Confidence 5532 111 2233333 67888899999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 264 RHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 264 ~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
+.-.+...+.+....-.-+..|+.++..+....+++.|+..+.+|++.||+++.|-..+|.++...|+|+.|+..|+.++
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 99999988743333344578899999999999999999999999999999999999999999999999999999999996
Q ss_pred HH
Q 008039 344 LL 345 (580)
Q Consensus 344 ~l 345 (580)
+-
T Consensus 242 eQ 243 (389)
T COG2956 242 EQ 243 (389)
T ss_pred Hh
Confidence 65
No 77
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.6e-10 Score=122.76 Aligned_cols=65 Identities=17% Similarity=0.398 Sum_probs=55.9
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++|+.++|++|||++|++||||+++.. ..|++.|+.|++||+ +|+|+..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--------------------~~a~~~f~~i~~AYe-vLsd~~k 61 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--------------------KEAEEKFKLINEAYG-VLSDEKK 61 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------cHHHHHHHHHHHHHH-HhccHHH
Confidence 5899999999999999999999999999999997541 357889999999999 5777776
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 62 R~~YD~ 67 (369)
T PRK14288 62 RALYDR 67 (369)
T ss_pred HHHHHH
Confidence 655554
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5e-08 Score=100.96 Aligned_cols=219 Identities=16% Similarity=0.084 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCC
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 120 (580)
-+..++.++-.-...-|.+...+...|.|++..|++.+|+..|+++. -.+|.+-.+ . .+=+-||...
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~---~~dpy~i~~-------M---D~Ya~LL~~e 279 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL---CANPDNVEA-------M---DLYAVLLGQE 279 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh---hCChhhhhh-------H---HHHHHHHHhc
Confidence 35667778888888889999999999999999999999999888854 122211100 0 0011122211
Q ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhccc
Q 008039 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISL 200 (580)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~ 200 (580)
. +.+++++.+-..+.. +..+...|++-|..+|...+++.|+.+-.++++++
T Consensus 280 g----------------~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~----------- 330 (564)
T KOG1174|consen 280 G----------------GCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE----------- 330 (564)
T ss_pred c----------------CHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----------
Confidence 1 112222222211211 12233457777888899999999999888888662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc
Q 008039 201 SDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGF 280 (580)
Q Consensus 201 ~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~ 280 (580)
|. ....++-+ |+.+...|+.++|+-+|..|+.+ .|.
T Consensus 331 ---------------------------~r--~~~alilK----------G~lL~~~~R~~~A~IaFR~Aq~L-----ap~ 366 (564)
T KOG1174|consen 331 ---------------------------PR--NHEALILK----------GRLLIALERHTQAVIAFRTAQML-----APY 366 (564)
T ss_pred ---------------------------cc--cchHHHhc----------cHHHHhccchHHHHHHHHHHHhc-----chh
Confidence 22 22222223 89999999999999999999987 455
Q ss_pred cHHHHHHHHHHHHHcCChHHHHH------------------------------------HHHHHHhcCCCcHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIA------------------------------------DCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~------------------------------------~~~~Al~ldP~~~~A~~~ra~ 324 (580)
.-.+|-.+-.||+..|++.+|+. .++++|.++|.+.+|...+|+
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 77788888888888877776554 466667788999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..-|.+++++..+++.+..
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHhhCccchHHHHHHHHHhh
Confidence 999999999999999999776
No 79
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.06 E-value=2.2e-08 Score=112.12 Aligned_cols=253 Identities=13% Similarity=0.085 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
.+...+.+|..+++ .|++++|+.++.++|.++|.++.+|..+|.+|-.+|+.++++...-.+- -++|.|++-
T Consensus 138 ~l~~ll~eAN~lfa---rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---HL~p~d~e~-- 209 (895)
T KOG2076|consen 138 ELRQLLGEANNLFA---RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA---HLNPKDYEL-- 209 (895)
T ss_pred HHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH---hcCCCChHH--
Confidence 48889999999984 6999999999999999999999999999999999999999998655533 233433311
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhH-HHHHHHHHHhcCCHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWR-YLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~-~~~LG~a~~~lG~~eeAi~ 180 (580)
|-.-+.+...- +.......|++ + .+..++++ |. ++.....|..+|+...|+.
T Consensus 210 --------W~~ladls~~~-------~~i~qA~~cy~------r---AI~~~p~n---~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 210 --------WKRLADLSEQL-------GNINQARYCYS------R---AIQANPSN---WELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred --------HHHHHHHHHhc-------ccHHHHHHHHH------H---HHhcCCcc---hHHHHHHHHHHHHhChHHHHHH
Confidence 11111111100 00001111111 1 12223332 33 2456788888999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH-HHHHHHHH-----------
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI-KLLLRRRT----------- 248 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~-k~~~~~k~----------- 248 (580)
-|.+.+++.| +-|...+..+...+ +......+
T Consensus 263 ~f~~l~~~~p------------------------------------~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 263 TFLQLLQLDP------------------------------------PVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhhCC------------------------------------chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988887631 02444455544442 22222211
Q ss_pred ---------------HHHHHHHcCCHHHHHHHHHHHHh----------------------cc------------------
Q 008039 249 ---------------AAIAALDAGLYSEAIRHFSKIVD----------------------GR------------------ 273 (580)
Q Consensus 249 ---------------~G~~~~~~g~y~eAi~~y~~AL~----------------------~~------------------ 273 (580)
.+..+++...|+.|+.....-.. +.
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 12333445556666555443332 00
Q ss_pred -------------------CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhcCChh
Q 008039 274 -------------------RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-SCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 274 -------------------~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-~~~~A~~~ra~~~~~lg~~~ 333 (580)
..........+|+.++.++...|+|.+|+..+...+...+ ++.-.|+++|.||..+|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 0000223578999999999999999999999999988765 34678999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008039 334 DCLHDLEHLKLL 345 (580)
Q Consensus 334 eAi~~~~~al~l 345 (580)
+|+..|++++.+
T Consensus 467 ~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 467 EAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHhc
Confidence 999999999888
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=9.2e-09 Score=108.37 Aligned_cols=177 Identities=16% Similarity=0.081 Sum_probs=134.4
Q ss_pred cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCc
Q 008039 55 LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSF 134 (580)
Q Consensus 55 l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 134 (580)
.+|+++.+|..+|.++...++++++...+.++.. ..+.+..
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------------------------ 41 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQ---ALAARAT------------------------------------ 41 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHH---HhccCCC------------------------------------
Confidence 3799999999999999999999999887777442 2111110
Q ss_pred ccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCC
Q 008039 135 KCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSN 214 (580)
Q Consensus 135 ~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~ 214 (580)
.....+..|.+++..|++++|+..++++++..
T Consensus 42 -----------------------~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------------- 73 (355)
T cd05804 42 -----------------------ERERAHVEALSAWIAGDLPKALALLEQLLDDY------------------------- 73 (355)
T ss_pred -----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------------------
Confidence 01134567889999999999999999998763
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH
Q 008039 215 NHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 215 ~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~ 294 (580)
|++...... +..++..|++..+...+.+++... ....+....++.++|.++..
T Consensus 74 -------------P~~~~a~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 74 -------------PRDLLALKL-------------HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred -------------CCcHHHHHH-------------hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHH
Confidence 433322110 334445555555555555555432 22256677888899999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 295 SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 295 lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|++++|+..|+++++++|+++.++..+|.++...|++++|+..|++++.+
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999999776
No 81
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.7e-10 Score=117.74 Aligned_cols=71 Identities=24% Similarity=0.400 Sum_probs=61.9
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
....||.+|||.+++++.+|+++||++||+|||||++..+ ..|...|++|+.||+ |||||
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~i-------------------eeat~~F~~i~aAYe-VLSdp 65 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRI-------------------EEATQQFQLIQAAYE-VLSDP 65 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccH-------------------HHHHHHHHHHHHHHH-HhcCh
Confidence 3567999999999999999999999999999999988765 578899999999999 68889
Q ss_pred hhHHHHHHHHH
Q 008039 474 MDEEAAEKRRK 484 (580)
Q Consensus 474 ~~~~~~~~~~~ 484 (580)
..+.=+..-|.
T Consensus 66 ~eR~wyd~hre 76 (508)
T KOG0717|consen 66 QERAWYDSHRE 76 (508)
T ss_pred HhhhhHHHHHH
Confidence 87666665553
No 82
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=3e-10 Score=120.73 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=54.8
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++. ..|++.|+.|++||+ +|+|+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---------------------~~a~~~F~~i~~Aye-vLsD~~ 60 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---------------------PDAHDKMVEINEAAD-VLLDKD 60 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------chHHHHHHHHHHHHH-HhcCHH
Confidence 3699999999999999999999999999999999753 357889999999999 577776
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 61 KR~~YD 66 (372)
T PRK14296 61 KRKQYD 66 (372)
T ss_pred Hhhhhh
Confidence 444444
No 83
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.03 E-value=8e-08 Score=104.01 Aligned_cols=214 Identities=11% Similarity=0.002 Sum_probs=159.6
Q ss_pred ccccchhh-hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 14 HWWLSNRK-IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
+|+...+. +....+..|...+ ..||+..|...+.++....|....++...|.++..+|+++.|...+.++.. .
T Consensus 74 ~~~~~r~~~k~~~~~~~glla~---~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~---~ 147 (409)
T TIGR00540 74 GWFSGRKRRKAQKQTEEALLKL---AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE---L 147 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---h
Confidence 56443222 5556677776665 689999999999999999999999999999999999999999999999652 2
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.|++. .-.....+.++...
T Consensus 148 ~p~~~-------------------------------------------------------------l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 148 AGNDN-------------------------------------------------------------ILVEIARTRILLAQ 166 (409)
T ss_pred CCcCc-------------------------------------------------------------hHHHHHHHHHHHHC
Confidence 12110 00123348889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
|+++.|+..++..++. .|++..+..++ |..
T Consensus 167 ~~~~~Al~~l~~l~~~--------------------------------------~P~~~~~l~ll------------~~~ 196 (409)
T TIGR00540 167 NELHAARHGVDKLLEM--------------------------------------APRHKEVLKLA------------EEA 196 (409)
T ss_pred CCHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHH------------HHH
Confidence 9999999999988765 26667776666 889
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHh
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP----SCIQALDTRALLLET 328 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP----~~~~A~~~ra~~~~~ 328 (580)
+...|+|++|+..+.+.++.. ..+.+....+.......++..+..++++..+..+....| +++..++..|..+..
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAG-LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999998852 111111112222223333455555666778888888888 589999999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
.|++++|+..++++++.
T Consensus 276 ~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKK 292 (409)
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999999999999776
No 84
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.01 E-value=8.7e-08 Score=103.33 Aligned_cols=272 Identities=9% Similarity=-0.004 Sum_probs=160.5
Q ss_pred ccccchhh-hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 14 HWWLSNRK-IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
+|+...+. +..+++..|...+ ..|||..|...+.++-...+....++.+-|.+....|+++.|...|.++. +.
T Consensus 74 ~~~~~rr~~~~~~~~~~gl~a~---~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~---~~ 147 (398)
T PRK10747 74 GWFVGRKRRRARKQTEQALLKL---AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA---EL 147 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hc
Confidence 56554333 5566677776655 47899999877777666655545555555677688999999999888855 33
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.|++.... .-..+.+.-..++ ..... ..+..+ ....+...+.+..++.+|...
T Consensus 148 ~~~~~~~~---------~l~~a~l~l~~g~----------------~~~Al-~~l~~~-~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 148 ADNDQLPV---------EITRVRIQLARNE----------------NHAAR-HGVDKL-LEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred CCcchHHH---------HHHHHHHHHHCCC----------------HHHHH-HHHHHH-HhcCCCCHHHHHHHHHHHHHH
Confidence 33322110 0000111110000 00000 111111 111233346778889999999
Q ss_pred CCHHHHHHHHHHHHHHHH---Hhhh---hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH-H----
Q 008039 173 GLMEDAMVLLQTGKRLAT---AAFR---RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI-K---- 241 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~---~~~r---~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~-k---- 241 (580)
|++++|+..+.+..+... .... ...+.. ....... ..+.......++.+ +
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~----l~~~~~~---------------~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG----LMDQAMA---------------DQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----HHHHHHH---------------hcCHHHHHHHHHhCCHHHhC
Confidence 999999988887764321 0000 000000 0000000 00001111110000 0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
...-...-+..+...|++++|.....++++. .+ +..+..-.+. +..+++++++..+++.++.+|+++..++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~-----~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QY-----DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-----CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 0111122388899999999999999999994 22 2232222232 34599999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++...++|++|...|++++++
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999877
No 85
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.3e-09 Score=109.66 Aligned_cols=171 Identities=18% Similarity=0.140 Sum_probs=136.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|++.+|+..--..+.+++.+..++..+|.|+.+....+.|+..|++ .|++.|+...+.+
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~q---al~ldpdh~~sk~---------------- 241 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQ---ALRLDPDHQKSKS---------------- 241 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhh---hhccChhhhhHHh----------------
Confidence 468999999999999999999999999999999999999999999988 4466665543311
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.++ .+.. ...|-.-|.-.|+.|++.+|.+.|..++.++
T Consensus 242 --------------~~~------------------~~k~--le~~k~~gN~~fk~G~y~~A~E~Yteal~id-------- 279 (486)
T KOG0550|consen 242 --------------ASM------------------MPKK--LEVKKERGNDAFKNGNYRKAYECYTEALNID-------- 279 (486)
T ss_pred --------------Hhh------------------hHHH--HHHHHhhhhhHhhccchhHHHHHHHHhhcCC--------
Confidence 000 0011 1134456999999999999999999998763
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES--VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~--~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
|++.. +.-+.++ +.+..+.|+..+||..++.++.+
T Consensus 280 ------------------------------P~n~~~naklY~nr----------a~v~~rLgrl~eaisdc~~Al~i--- 316 (486)
T KOG0550|consen 280 ------------------------------PSNKKTNAKLYGNR----------ALVNIRLGRLREAISDCNEALKI--- 316 (486)
T ss_pred ------------------------------ccccchhHHHHHHh----------HhhhcccCCchhhhhhhhhhhhc---
Confidence 44333 2333344 88999999999999999999998
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
++....+|..+|.||+.+++|++|++|+++|+++..+
T Consensus 317 --D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 317 --DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4557899999999999999999999999999998766
No 86
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=8e-10 Score=118.32 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=56.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||+ +|+|+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vLsD~~ 66 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--------------------PAAEERFKAVSEAHD-VLSDPA 66 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHH-Hhcchh
Confidence 36999999999999999999999999999999997542 367889999999999 677777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 67 KR~~YD~ 73 (392)
T PRK14279 67 KRKEYDE 73 (392)
T ss_pred hhhHHHH
Confidence 6655554
No 87
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.96 E-value=1.7e-09 Score=84.14 Aligned_cols=57 Identities=28% Similarity=0.454 Sum_probs=50.5
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
.+||.+|||.++++..+|+++|+++++++|||++.+. ...+...|..|++||++|.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-------------------~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-------------------KEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------hHHHHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999999999999998653 15778899999999997655
No 88
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.7e-10 Score=113.92 Aligned_cols=66 Identities=24% Similarity=0.399 Sum_probs=57.8
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
...||.+|||.++|+..||++|||++|++|||||++. +.++|+.|++||+ +++|+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----------------------~~ekfkei~~Aye-vLsd~e 58 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----------------------AGEKFKEISQAYE-VLSDPE 58 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----------------------HHHHHHHHHHHHH-HhcCHH
Confidence 3569999999999999999999999999999999865 4577999999999 688898
Q ss_pred hHHHHHHHHH
Q 008039 475 DEEAAEKRRK 484 (580)
Q Consensus 475 ~~~~~~~~~~ 484 (580)
.++.+.+-..
T Consensus 59 kr~~yD~~g~ 68 (337)
T KOG0712|consen 59 KREIYDQYGE 68 (337)
T ss_pred HHHHHHhhhh
Confidence 7777776553
No 89
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=1.2e-09 Score=116.24 Aligned_cols=66 Identities=17% Similarity=0.362 Sum_probs=56.1
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||+ +|+|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~ 61 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN--------------------KESEEKFKEATEAYE-ILRDPK 61 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------hHHHHHHHHHHHHHH-HhccHH
Confidence 35899999999999999999999999999999997541 367889999999999 577777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 kR~~YD~ 68 (372)
T PRK14286 62 KRQAYDQ 68 (372)
T ss_pred HHHHHHH
Confidence 5555553
No 90
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.95 E-value=2.8e-09 Score=85.01 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIR-CLPDCLHDLEHLKLL 345 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg-~~~eAi~~~~~al~l 345 (580)
++.+|+++|.+++.+|+|++|+.+|+++|.++|+++.+|+++|.++..+| ++++|+.+|++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 57788999999999999999999999999999999999999999999998 799999999999887
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=4.1e-08 Score=97.82 Aligned_cols=203 Identities=18% Similarity=0.217 Sum_probs=144.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
...+|..|++++..-.+.+|++...+.++|-||....+|.+|.++|++ .+.+.|
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQ---L~ql~P----------------------- 75 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQ---LGQLHP----------------------- 75 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhCh-----------------------
Confidence 456789999999999999999999999999999999999999999998 222222
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH----------HHHH
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ----------TGKR 187 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~----------~al~ 187 (580)
...++++| -++.++..+.+.+|+.... ++++
T Consensus 76 --------------------------------------~~~qYrlY-~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 76 --------------------------------------ELEQYRLY-QAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred --------------------------------------HHHHHHHH-HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 11122322 3677777778887776643 3444
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH---HHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 188 LATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI---KLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 188 l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~---k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
+..+ ..+..+| + ..+..+.... ..+......|-.+|+.|+|++|++
T Consensus 117 LqaA-----IkYse~D-l-------------------------~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 117 LQAA-----IKYSEGD-L-------------------------PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHHH-----Hhccccc-C-------------------------cchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 4322 1111111 1 1111111111 011122233889999999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCc-------------------------
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----EPSC------------------------- 315 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----dP~~------------------------- 315 (580)
.|+.|++. ..+++.+-+|++.|++..|+++.|++...+.|+- .|..
T Consensus 166 kFqaAlqv-----sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 166 KFQAALQV-----SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHhh-----cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999997 5668888999999999999999999998887753 3432
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
++|+...+.++.+.++++.|.+.+..
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 67888889999999999998766543
No 92
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.3e-09 Score=113.65 Aligned_cols=69 Identities=26% Similarity=0.384 Sum_probs=61.5
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|+|++++++++|++|||++++-+||||+.+.. .|..|+++|..|++||| +++||
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd-----------------~K~~AE~~F~~i~~AyE-VLsDp 68 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPD-----------------QKKAAEEKFQRIQRAYE-VLSDP 68 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChh-----------------HHHHHHHHHHHHHHHHH-HhcCh
Confidence 3558999999999999999999999999999999987644 56899999999999999 68889
Q ss_pred hhHHHHH
Q 008039 474 MDEEAAE 480 (580)
Q Consensus 474 ~~~~~~~ 480 (580)
..++.+.
T Consensus 69 ~kRaIYD 75 (546)
T KOG0718|consen 69 QKRAIYD 75 (546)
T ss_pred HHHHHHH
Confidence 8777773
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.94 E-value=1.7e-08 Score=107.14 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+...|..++..|++++|+.+|++++++. |++..+.. .+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------------------------------------P~~~~a~~--~~-- 42 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------------------------------------PNNAELYA--DR-- 42 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHH--HH--
Confidence 4556999999999999999999999773 44444433 33
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|.+++..|+|++|+..|.++|.+ .|.+..+|+++|.+++.+|+|++|+..|++++.++|++..++..
T Consensus 43 --------a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 43 --------AQANIKLGNFTEAVADANKAIEL-----DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999998 45578999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 008039 322 RALLLETIR 330 (580)
Q Consensus 322 ra~~~~~lg 330 (580)
++.|...+.
T Consensus 110 l~~~~~kl~ 118 (356)
T PLN03088 110 IKECDEKIA 118 (356)
T ss_pred HHHHHHHHH
Confidence 988877663
No 94
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.93 E-value=3e-08 Score=102.41 Aligned_cols=248 Identities=13% Similarity=0.097 Sum_probs=155.4
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
-++..|. ..||+..-+.+|.+||++.-.+- .+|..+|++|++++.|++|++.-..=|-.-+.-++.-|-.-|+
T Consensus 22 lEGERLc---k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 22 LEGERLC---KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHH---hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 3445565 68999999999999999887654 5677899999999999999986554331111111111100000
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCC-CCcccc---cc-hHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC----
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRD-PSFKCF---SV-SDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL---- 174 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~---~~-~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~---- 174 (580)
. .|. +.+.-.+..+ ...+|| ++ .+|..+|..+ .++|+||.+|...|+
T Consensus 99 ----------g-NLG---NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~----------RAlYNlgnvYhakGk~~g~ 154 (639)
T KOG1130|consen 99 ----------G-NLG---NTLKVKGAFDEALTCCFRHLDFARELGDRVLES----------RALYNLGNVYHAKGKCTGL 154 (639)
T ss_pred ----------c-ccc---chhhhhcccchHHHHHHHHhHHHHHHhHHHhhh----------HHHhhhhhhhhhcccccCC
Confidence 0 000 0000001122 223443 33 2344455544 579999999998876
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 175 ----------------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 175 ----------------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
++.|+++|..-+++....-.+. -...+.
T Consensus 155 ~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~--------------------------------aqGRa~---- 198 (639)
T KOG1130|consen 155 EAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRL--------------------------------AQGRAY---- 198 (639)
T ss_pred CChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------------------------------hhcchh----
Confidence 2345555555444432110000 000010
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----EP 313 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----dP 313 (580)
-..||.+|-.|+|+.||.+-+.-|.+.. -.+..-.-.++.|+|.||.-+|+|+.|+++|.+++.+ ..
T Consensus 199 --------GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 199 --------GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred --------cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 1128889999999999999888777621 0111123468999999999999999999999987655 22
Q ss_pred C--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 314 S--CIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 314 ~--~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
. -....|.+|..|.-+.+|..||.++++-+.+.
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24567899999999999999999999987773
No 95
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=1.5e-09 Score=115.39 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=55.9
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. +..|++.|++|++||+ +|+|+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------------------~~~a~~~f~~i~~Ay~-vL~d~~ 62 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-------------------RKEAEQKFKEIQEAYE-VLSDPQ 62 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-------------------hhHHHHHHHHHHHHHH-HhcChh
Confidence 36999999999999999999999999999999997541 1357899999999999 567776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 63 kR~~YD~ 69 (369)
T PRK14282 63 KRAMYDR 69 (369)
T ss_pred hHHHHhh
Confidence 5555543
No 96
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=1.7e-09 Score=115.00 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=55.9
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||++.. ..+++.|+.|++||+ +++|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~~~~~f~~i~~Ay~-~L~d~~ 60 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---------------------PDAEDKFKEVKEAYD-TLSDPQ 60 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHH-HhCcHh
Confidence 3589999999999999999999999999999999753 357789999999999 577777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 61 kR~~YD~ 67 (371)
T PRK14287 61 KKAHYDQ 67 (371)
T ss_pred HHHHHHh
Confidence 6666554
No 97
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.2e-09 Score=108.99 Aligned_cols=69 Identities=29% Similarity=0.442 Sum_probs=60.5
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||.+||+..+++..+|+++||..||++||||+++.+ .|.+.|..+.+||+ +++|+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP--------------------~A~ekFq~L~eAy~-VL~D~~ 62 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP--------------------QAAEKFQELSEAYE-VLSDEE 62 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh--------------------HHHHHHHHHHHHHH-HhcCHH
Confidence 568999999999999999999999999999999999865 58999999999999 577787
Q ss_pred hHHHHHHHHH
Q 008039 475 DEEAAEKRRK 484 (580)
Q Consensus 475 ~~~~~~~~~~ 484 (580)
-+.++.+-++
T Consensus 63 ~R~~YDk~~k 72 (296)
T KOG0691|consen 63 SRAAYDKLRK 72 (296)
T ss_pred HHHHHHHHhh
Confidence 6777765544
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.91 E-value=3.4e-08 Score=89.20 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
...+.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------p~~~~~~~~l-- 57 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--------------------------------------PYNSRYWLGL-- 57 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------------------CCcHHHHHHH--
Confidence 457789999999999999999999988652 4444444333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|..++..|+|++|+..|.+++.. .|.+...++++|.++..+|++++|+..++++++++|++....
T Consensus 58 ----------a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 58 ----------AACCQMLKEYEEAIDAYALAAAL-----DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999997 355789999999999999999999999999999999887744
No 99
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.91 E-value=3.8e-09 Score=83.38 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=50.5
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+||.+|||.++++..+|+++|++++.++|||+..... ..++..|..|++||++|.+ +.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-------------------~~~~~~~~~i~~Ay~~L~~-~~ 58 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-------------------AEAEEKFARINEAYEILSD-PE 58 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-------------------HHHHHHHHHHHHHHHHHHS-HH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-------------------hhhhHHHHHHHHHHHHhCC-HH
Confidence 6899999999999999999999999999999976632 3678999999999996544 44
No 100
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.91 E-value=3.1e-09 Score=81.06 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=48.3
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
+||++|||..+++.++|+++|+++++++|||+..+. ..+...|..|++||++|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--------------------~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--------------------PEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999997652 356788999999999764
No 101
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.91 E-value=8.2e-08 Score=111.41 Aligned_cols=178 Identities=14% Similarity=0.026 Sum_probs=142.3
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCC
Q 008039 48 LLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDS 127 (580)
Q Consensus 48 ~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 127 (580)
++=-.+-+.|.++...+..|.+.+..|+|.+|++.|++++ +..|.+...
T Consensus 22 ~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL---~~~P~~~~a---------------------------- 70 (822)
T PRK14574 22 LFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEES---KAGPLQSGQ---------------------------- 70 (822)
T ss_pred HHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHH---hhCccchhh----------------------------
Confidence 4444566889999999999999999999999999999955 333332200
Q ss_pred CCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCC
Q 008039 128 LGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPF 207 (580)
Q Consensus 128 ~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~ 207 (580)
.+-+..++...|+.++|+.++++++
T Consensus 71 ----------------------------------v~dll~l~~~~G~~~~A~~~~eka~--------------------- 95 (822)
T PRK14574 71 ----------------------------------VDDWLQIAGWAGRDQEVIDVYERYQ--------------------- 95 (822)
T ss_pred ----------------------------------HHHHHHHHHHcCCcHHHHHHHHHhc---------------------
Confidence 1134566777899999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHH
Q 008039 208 SKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMH 287 (580)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~n 287 (580)
+|++.....++.. |..+...|+|++|++.|+++++. .|.++.++..
T Consensus 96 -------------------~p~n~~~~~llal----------A~ly~~~gdyd~Aiely~kaL~~-----dP~n~~~l~g 141 (822)
T PRK14574 96 -------------------SSMNISSRGLASA----------ARAYRNEKRWDQALALWQSSLKK-----DPTNPDLISG 141 (822)
T ss_pred -------------------cCCCCCHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHH
Confidence 1334444444433 77889999999999999999997 3447788889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 288 RAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 288 ra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
++.++...+++++|+..+.+++..+|.+... ..++.++..++++.+|+..|++++++.
T Consensus 142 La~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 142 MIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999996665 667778877888888999999998883
No 102
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=4e-08 Score=92.81 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=90.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLE- 327 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~- 327 (580)
.|..++..|+|++|+..|.+++.+. +. ....+.+|+++|.++..+|++++|+..|.+++.++|.+..++..+|.++.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~-~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLE-ID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc-cc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3999999999999999999999873 22 22356799999999999999999999999999999999999999999999
Q ss_pred ------hcCChhHHHHHHHHHHHHHHHhhhcC
Q 008039 328 ------TIRCLPDCLHDLEHLKLLYNAILRDR 353 (580)
Q Consensus 328 ------~lg~~~eAi~~~~~al~l~~~~l~~~ 353 (580)
.+|++++|+.+|.+++.++...+..+
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999988876665444
No 103
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.90 E-value=2.1e-09 Score=115.59 Aligned_cols=63 Identities=25% Similarity=0.505 Sum_probs=53.4
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||++|||.++++..+|++|||++|++|||||++. .+.|+.|++||+ +++|+
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------------------------~e~F~~i~~AYe-vLsD~ 80 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------------------------PEKFKEISRAYE-VLSDP 80 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------------------------HHHHHHHHHHHH-HhccH
Confidence 35699999999999999999999999999999999632 257999999999 57777
Q ss_pred hhHHHHHH
Q 008039 474 MDEEAAEK 481 (580)
Q Consensus 474 ~~~~~~~~ 481 (580)
..+..+.+
T Consensus 81 ~kR~~YD~ 88 (421)
T PTZ00037 81 EKRKIYDE 88 (421)
T ss_pred HHHHHHhh
Confidence 75555554
No 104
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=5e-07 Score=99.74 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+++.+|+.|-.+|++++|+.+.++||...|+.++.|+.+|.+|...|++.+|...++.+..|.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 35678899999999999999999999999999999999999999999999999999999998773
No 105
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=2.4e-09 Score=114.28 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=56.1
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++..+|++|||++|++||||+++. ..|++.|+.|++||+ +++|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~a~~~f~~i~~Ay~-~Lsd~~ 61 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---------------------EGAEEKFKEISEAYA-VLSDDE 61 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHH-HhchhH
Confidence 4699999999999999999999999999999999753 357889999999999 577777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 kR~~YD~ 68 (378)
T PRK14283 62 KRQRYDQ 68 (378)
T ss_pred HHHHHhh
Confidence 6655554
No 106
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=3.1e-09 Score=109.46 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=53.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||++.. ..+++.|+.|++||++ ++++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~-L~d~~ 60 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---------------------PGAEEKFKEINEAYTV-LSDPE 60 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHH-hcCHH
Confidence 3689999999999999999999999999999999753 3567899999999995 66666
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 61 kr~~yD 66 (291)
T PRK14299 61 KRRIYD 66 (291)
T ss_pred HHHHHH
Confidence 444443
No 107
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=2.8e-09 Score=113.21 Aligned_cols=65 Identities=23% Similarity=0.464 Sum_probs=54.6
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||+++.. ..|++.|++|++||+ +++|+..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~k 61 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--------------------KEAESIFKEATEAYE-VLIDDNK 61 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------HHHHHHHHHHHHHHH-HHcCcch
Confidence 5899999999999999999999999999999997542 357889999999999 5666664
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 62 r~~yd~ 67 (365)
T PRK14285 62 RAQYDR 67 (365)
T ss_pred hHHHHh
Confidence 544443
No 108
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=2.9e-09 Score=113.88 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=55.8
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++..+|++|||+++++||||++... ..|++.|+.|++||+ +++|+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~ 66 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--------------------AKAEERFKEISEAYD-VLSDEK 66 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hhHHHHHHHHHHHHH-HHCchh
Confidence 35999999999999999999999999999999997542 357889999999999 567777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 67 ~r~~yD~ 73 (389)
T PRK14295 67 KRKEYDE 73 (389)
T ss_pred hHHHHHH
Confidence 5555544
No 109
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=2.5e-09 Score=114.17 Aligned_cols=65 Identities=26% Similarity=0.412 Sum_probs=55.0
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||+++. ..|++.|++|++||+ +++|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~a~~~f~~i~~Ay~-vL~d~~ 60 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---------------------PGAEEKYKEVQEAYE-TLSDPQ 60 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------cCHHHHHHHHHHHHH-HhcCHh
Confidence 3599999999999999999999999999999999764 246788999999999 567777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 61 kR~~YD~ 67 (380)
T PRK14276 61 KRAAYDQ 67 (380)
T ss_pred hhhhHhh
Confidence 5555543
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.88 E-value=1.6e-07 Score=92.56 Aligned_cols=177 Identities=15% Similarity=0.067 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCC
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGG 121 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 121 (580)
...++..+-+....+|.+..+ .+.+..+...|+-++.+....+.. +..+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~----------------------------~~~~~- 98 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA----------------------------IAYPK- 98 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh----------------------------ccCcc-
Confidence 344888889999999999999 999999999999998887666522 00000
Q ss_pred CCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 008039 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLS 201 (580)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~ 201 (580)
+ ......+|...+..|++..|+..++++.++.
T Consensus 99 ---------d---------------------------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------ 130 (257)
T COG5010 99 ---------D---------------------------RELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------ 130 (257)
T ss_pred ---------c---------------------------HHHHHHHHHHHHHhcchHHHHHHHHHHhccC------------
Confidence 0 0112237999999999999999999998763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc
Q 008039 202 DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL 281 (580)
Q Consensus 202 ~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~ 281 (580)
|.+..+...+ |.+|-+.|++++|-..|.+++++ .+..
T Consensus 131 --------------------------p~d~~~~~~l------------gaaldq~Gr~~~Ar~ay~qAl~L-----~~~~ 167 (257)
T COG5010 131 --------------------------PTDWEAWNLL------------GAALDQLGRFDEARRAYRQALEL-----APNE 167 (257)
T ss_pred --------------------------CCChhhhhHH------------HHHHHHccChhHHHHHHHHHHHh-----ccCC
Confidence 5555555555 99999999999999999999998 4557
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
+.++.|+|..++-.|+++.|...+..+...-+.+.....+++.+....|++++|...-
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8899999999999999999999999999988889999999999999999999996543
No 111
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=2.9e-09 Score=113.41 Aligned_cols=65 Identities=23% Similarity=0.454 Sum_probs=55.2
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++. ..+++.|++|++||+ +|+|+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~-vL~d~~ 61 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---------------------PDAEEKFKEISEAYA-VLSDAE 61 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---------------------hhHHHHHHHHHHHHH-HhcchH
Confidence 3599999999999999999999999999999999753 356789999999999 577777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 kR~~YD~ 68 (377)
T PRK14298 62 KRAQYDR 68 (377)
T ss_pred hhhhhhh
Confidence 5555543
No 112
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=2.4e-09 Score=114.13 Aligned_cols=63 Identities=27% Similarity=0.418 Sum_probs=54.0
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||++|++||||+++. ..|++.|+.|++||+ +++|+..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---------------------~~a~~~f~~i~~Ay~-vL~d~~~ 60 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---------------------EEAQEKFKEISVAYE-VLSDPEK 60 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---------------------HHHHHHHHHHHHHHH-Hhchhhh
Confidence 589999999999999999999999999999999753 357889999999999 5666664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 61 r~~YD 65 (378)
T PRK14278 61 RRIVD 65 (378)
T ss_pred hhhhh
Confidence 44444
No 113
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=3.3e-09 Score=113.33 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=55.2
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||+++. ..+++.|+.|++||+ +++|+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~-vLsd~~ 59 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---------------------PEAEEKFKEINEAYQ-VLSDPE 59 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------ccHHHHHHHHHHHHH-HhcCHH
Confidence 3699999999999999999999999999999999764 256788999999999 567776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 60 kR~~YD~ 66 (382)
T PRK14291 60 KRKLYDQ 66 (382)
T ss_pred HHHHHhh
Confidence 5555543
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.86 E-value=6.7e-09 Score=86.46 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=73.6
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|+|+.|+..|.+++... |. .+ +...++++|.||+.+|+|++|+..+++ +..+|.+...++.+|.++..+|+|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-~~-~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-PT-NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-CG-TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CCccHHHHHHHHHHHHHHC-CC-Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 3689999999999999973 32 12 677888899999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 335 CLHDLEHL 342 (580)
Q Consensus 335 Ai~~~~~a 342 (580)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 115
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=4e-09 Score=112.85 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=55.6
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||+ +++|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~ 62 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--------------------KEAEQKFKEINEAYE-ILSDPQ 62 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hHHHHHHHHHHHHHH-HhCCHH
Confidence 35999999999999999999999999999999997642 357889999999999 567777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 63 kr~~yD~ 69 (386)
T PRK14277 63 KRAQYDQ 69 (386)
T ss_pred HHHHHHh
Confidence 5555543
No 116
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=4.6e-09 Score=111.67 Aligned_cols=66 Identities=23% Similarity=0.420 Sum_probs=55.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++..+|++|||+++++||||+++.. ..+++.|+.|++||+ +++|+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~~~~~f~~~~~Ay~-vL~d~~ 61 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--------------------KEAEELFKEAAEAYE-VLSDPK 61 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------hHHHHHHHHHHHHHH-HhccHH
Confidence 46999999999999999999999999999999997542 356789999999999 567777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 ~r~~yD~ 68 (366)
T PRK14294 62 KRGIYDQ 68 (366)
T ss_pred HHHHHHh
Confidence 5555543
No 117
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.85 E-value=1e-08 Score=81.67 Aligned_cols=62 Identities=32% Similarity=0.440 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-RIAESIADCNKTLALEP 313 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-~~~eAl~~~~~Al~ldP 313 (580)
...|..++..|+|++|+..|+++|++ .|.++.+|+++|.|+..+| ++.+|+.+++++|+++|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34499999999999999999999998 4558999999999999999 79999999999999998
No 118
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.4e-07 Score=98.68 Aligned_cols=189 Identities=15% Similarity=0.115 Sum_probs=139.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|+|++|+...++.|.+.|++..++..+--|++++++|++|+.+.++... +.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-------~~-------------------- 76 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-------LL-------------------- 76 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-------hh--------------------
Confidence 679999999999999999999999999999999999999999976555210 00
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
..+ + -.|..+-|.|++++.++|+..++.+
T Consensus 77 ~~~------------~---------------------------~~fEKAYc~Yrlnk~Dealk~~~~~------------ 105 (652)
T KOG2376|consen 77 VIN------------S---------------------------FFFEKAYCEYRLNKLDEALKTLKGL------------ 105 (652)
T ss_pred hcc------------h---------------------------hhHHHHHHHHHcccHHHHHHHHhcc------------
Confidence 000 0 0134556788899999998877721
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR---- 273 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~---- 273 (580)
++++.....+. |..+|+.|+|++|+..|...++-.
T Consensus 106 -----------------------------~~~~~~ll~L~------------AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 106 -----------------------------DRLDDKLLELR------------AQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred -----------------------------cccchHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 13333333333 778889999999999988775521
Q ss_pred ----------------------CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCc--------H
Q 008039 274 ----------------------RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-------EPSC--------I 316 (580)
Q Consensus 274 ----------------------~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-------dP~~--------~ 316 (580)
-|.........+||.+.++...|+|.+|++.+.+|+.+ +..+ .
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 02212236788999999999999999999999988433 1111 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
-....++-++..+|+-.+|...|...+..
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 35678899999999999999999988765
No 119
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=2.3e-08 Score=102.28 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=101.7
Q ss_pred ChhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHh
Q 008039 38 EHSEIASALSLLDAALALS--PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~--P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
..+++..+...++++.... |.++.+|..+|.++...|++++|+.+|++++ +..|++.
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al---~~~P~~~------------------ 180 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL---ELDPDDP------------------ 180 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH---HH-TT-H------------------
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCH------------------
Confidence 4588999999999987766 7888999999999999999999999999965 4444322
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~ 195 (580)
.....++.++..+|+.+++...+....+..+
T Consensus 181 --------------------------------------------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~----- 211 (280)
T PF13429_consen 181 --------------------------------------------DARNALAWLLIDMGDYDEAREALKRLLKAAP----- 211 (280)
T ss_dssp --------------------------------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-----
T ss_pred --------------------------------------------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-----
Confidence 1344567888999999998888887665521
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
++......+ |..++..|++++|+..|.+++..
T Consensus 212 ---------------------------------~~~~~~~~l------------a~~~~~lg~~~~Al~~~~~~~~~--- 243 (280)
T PF13429_consen 212 ---------------------------------DDPDLWDAL------------AAAYLQLGRYEEALEYLEKALKL--- 243 (280)
T ss_dssp ---------------------------------TSCCHCHHH------------HHHHHHHT-HHHHHHHHHHHHHH---
T ss_pred ---------------------------------CHHHHHHHH------------HHHhccccccccccccccccccc---
Confidence 111222222 88999999999999999999996
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.|.++.++.+.|.++...|++++|+....+++..
T Consensus 244 --~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 --NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp --STT-HHHHHHHHHHHT------------------
T ss_pred --cccccccccccccccccccccccccccccccccc
Confidence 4558899999999999999999999999888753
No 120
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.4e-07 Score=97.71 Aligned_cols=187 Identities=16% Similarity=0.090 Sum_probs=137.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
...++..|+.+-.++|.++|++..++.++|++|+.++|.++|+-.|+.++ .++|
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap----------------------- 365 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAP----------------------- 365 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH---hcch-----------------------
Confidence 56899999999999999999999999999999999999999999999865 2221
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.+ ...|-.|-.+|...|.+.+|+..-..+.+.-++
T Consensus 366 --~r-------------------------------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~------ 400 (564)
T KOG1174|consen 366 --YR-------------------------------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQN------ 400 (564)
T ss_pred --hh-------------------------------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc------
Confidence 10 113556678899999999999887777665321
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhccCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA-IAA-LDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G-~~~-~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+.....++ | .++ +.-.--++|-..|+++|.+
T Consensus 401 --------------------------------sA~~LtL~------------g~~V~~~dp~~rEKAKkf~ek~L~~--- 433 (564)
T KOG1174|consen 401 --------------------------------SARSLTLF------------GTLVLFPDPRMREKAKKFAEKSLKI--- 433 (564)
T ss_pred --------------------------------chhhhhhh------------cceeeccCchhHHHHHHHHHhhhcc---
Confidence 11111111 1 111 1112236677778888886
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|....+-..++..+..-|++.++|..+++.|...|++ ..+..+|.++...+.+.+|+..|..|+.+
T Consensus 434 --~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 434 --NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred --CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34456667777888888888888888888888776654 45677888888888888888888888666
No 121
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=4.5e-09 Score=111.94 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=55.6
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||+++.. ..|++.|+.|++||+ +|+++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~ 61 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--------------------PEAEQKFKEAAEAYE-VLRDAE 61 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--------------------hHHHHHHHHHHHHHH-Hhcchh
Confidence 36999999999999999999999999999999997542 357889999999999 567776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 kr~~yD~ 68 (373)
T PRK14301 62 KRARYDR 68 (373)
T ss_pred hhhhhhh
Confidence 5555543
No 122
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=4.9e-09 Score=111.78 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=54.5
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++..+|++|||+++++||||+++. ..|++.|+.|++||+ +++++..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~a~~~f~~i~~Ay~-vL~d~~k 61 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---------------------EGADEKFKEISEAYE-VLSDDQK 61 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHH-HhccHhH
Confidence 589999999999999999999999999999999754 256789999999999 5667765
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 62 r~~yD~ 67 (376)
T PRK14280 62 RAQYDQ 67 (376)
T ss_pred HHHHHh
Confidence 555543
No 123
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=5.5e-09 Score=112.02 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=53.4
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhhH
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDE 476 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~~ 476 (580)
|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||++ ++|+..+
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~v-L~d~~kR 60 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--------------------AEAEKRFKEVSEAYEV-LSDAQKR 60 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------hHHHHHHHHHHHHHHH-hcCHHHH
Confidence 799999999999999999999999999999997642 3578899999999995 5666644
Q ss_pred HHHH
Q 008039 477 EAAE 480 (580)
Q Consensus 477 ~~~~ 480 (580)
..+.
T Consensus 61 ~~YD 64 (391)
T PRK14284 61 ESYD 64 (391)
T ss_pred HHHH
Confidence 4444
No 124
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=2e-07 Score=97.24 Aligned_cols=221 Identities=16% Similarity=0.087 Sum_probs=138.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
..++..|...-+.|+.++-.++.++.++|.+-+..|.++.|++.|+.++.. |.+-. +. |+.
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n------dasc~------ea-------lfn 529 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN------DASCT------EA-------LFN 529 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC------chHHH------HH-------HHH
Confidence 457888888888888888888888888888888888888888888886621 11000 00 000
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.+-- ....+..+..+-||- ++.+.|.. ....++.++.+|-.+.+...||++|-++..+
T Consensus 530 iglt-~e~~~~ldeald~f~------klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~sl---------- 587 (840)
T KOG2003|consen 530 IGLT-AEALGNLDEALDCFL------KLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANSL---------- 587 (840)
T ss_pred hccc-HHHhcCHHHHHHHHH------HHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----------
Confidence 0000 000000001111110 01111100 0112333444444444444444444443322
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
.|....+..-+ |..|-+.|+-.+|.++|-....+ .
T Consensus 588 ----------------------------ip~dp~ilskl------------~dlydqegdksqafq~~ydsyry-----f 622 (840)
T KOG2003|consen 588 ----------------------------IPNDPAILSKL------------ADLYDQEGDKSQAFQCHYDSYRY-----F 622 (840)
T ss_pred ----------------------------CCCCHHHHHHH------------HHHhhcccchhhhhhhhhhcccc-----c
Confidence 13222222222 77777888888888888777776 5
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|-+....-.+|.-|+...-++.||.++++|--+.|+..+-....+.|+...|+|..|...|+....-
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 6677777888999999999999999999999999999999999999999999999999999887544
No 125
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.81 E-value=8.4e-08 Score=84.91 Aligned_cols=96 Identities=29% Similarity=0.250 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALD 320 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~ 320 (580)
.+.-+|..+-..|+.+.|++.|.++|.+ -|.++.+|+||++++.-.|+.++|++|+++|+++.-+- -.+|.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 3444599999999999999999999998 45689999999999999999999999999999996544 35799
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.||.+|..+|+-+.|..||+.+.+|
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHh
Confidence 9999999999999999999999887
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=2.9e-07 Score=106.16 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=155.9
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
+...+.+...+..+. ..|++++|+..++.+++.+|....+|+..|.++++.+++.++... .++ ..-+.+.
T Consensus 28 p~n~~a~~~Li~~~~---~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---~~~~~~~-- 97 (906)
T PRK14720 28 LSKFKELDDLIDAYK---SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---DSFSQNL-- 97 (906)
T ss_pred cchHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---hhccccc--
Confidence 334444444444443 689999999999999999999999999999999999999988865 433 1111111
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
+ .--++++-+.++.- .....+++.||.||-.+|+.++|.
T Consensus 98 -------------------------------~----~~~ve~~~~~i~~~------~~~k~Al~~LA~~Ydk~g~~~ka~ 136 (906)
T PRK14720 98 -------------------------------K----WAIVEHICDKILLY------GENKLALRTLAEAYAKLNENKKLK 136 (906)
T ss_pred -------------------------------c----hhHHHHHHHHHHhh------hhhhHHHHHHHHHHHHcCChHHHH
Confidence 0 00122222222221 122347899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH------HHHHHH-HHHHHH
Q 008039 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI------KLLLRR-RTAAIA 252 (580)
Q Consensus 180 ~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~------k~~~~~-k~~G~~ 252 (580)
..|+++++++ |++..+...+... .++..+ +.....
T Consensus 137 ~~yer~L~~D--------------------------------------~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 137 GVWERLVKAD--------------------------------------RDNPEIVKKLATSYEEEDKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhcC--------------------------------------cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999873 4444444433211 111111 112234
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcc----------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGF----------------LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~----------------~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
++..++|.++.+.+.+.+.. ++..... ...++.-+=.+|..+++|++++..+..+|+++|++.
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~-~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHY-NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred HHhhhcchHHHHHHHHHHhc-CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 55567777777777777775 2321111 122333333889999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--------------------CChhHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETI--------------------RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~l--------------------g~~~eAi~~~~~al~l 345 (580)
+|++.++.+|... ..+..|+.+|++.+.+
T Consensus 258 ~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f 306 (906)
T PRK14720 258 KAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVF 306 (906)
T ss_pred hhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeee
Confidence 9999999998731 2345666666666555
No 127
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.80 E-value=8.2e-09 Score=110.07 Aligned_cols=65 Identities=25% Similarity=0.444 Sum_probs=54.2
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||+ +++++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-~L~d~~ 61 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--------------------KEAEEKFKEIKEAYE-VLSDPQ 61 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------HHHHHHHHHHHHHHH-Hhcchh
Confidence 46999999999999999999999999999999997542 357889999999999 566666
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 62 ~r~~yd 67 (371)
T PRK10767 62 KRAAYD 67 (371)
T ss_pred hhhHhh
Confidence 444443
No 128
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.80 E-value=6.8e-09 Score=111.42 Aligned_cols=64 Identities=27% Similarity=0.436 Sum_probs=54.0
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++..+|++|||+++++||||+++.. ..|++.|+.|++||+ +++++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~~ 61 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--------------------KEAEEHFKEVNEAYE-VLSNDDK 61 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hHHHHHHHHHHHHHH-Hhhhhhh
Confidence 5899999999999999999999999999999997542 357789999999999 5666664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 62 r~~yD 66 (397)
T PRK14281 62 RRRYD 66 (397)
T ss_pred hhhhh
Confidence 44444
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.80 E-value=7e-08 Score=89.21 Aligned_cols=102 Identities=12% Similarity=-0.011 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
.+.++.++..|-.++ ..|++++|..+|.-+..++|.+..+|+++|.|+-.+|+|++||++|..++ .++|+|+
T Consensus 32 ~~~l~~lY~~A~~ly---~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp-- 103 (157)
T PRK15363 32 TQPLNTLYRYAMQLM---EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAP-- 103 (157)
T ss_pred HHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCc--
Confidence 456777777887777 78999999999999999999999999999999999999999999999965 3334333
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
+.++++|.|++.+|+.+.|.
T Consensus 104 ------------------------------------------------------------~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 104 ------------------------------------------------------------QAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred ------------------------------------------------------------hHHHHHHHHHHHcCCHHHHH
Confidence 36889999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 180 VLLQTGKRLA 189 (580)
Q Consensus 180 ~~l~~al~l~ 189 (580)
..|+.++.+.
T Consensus 124 ~aF~~Ai~~~ 133 (157)
T PRK15363 124 KALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHh
Confidence 9999999773
No 130
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.80 E-value=6.4e-09 Score=111.14 Aligned_cols=64 Identities=27% Similarity=0.490 Sum_probs=54.4
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||+++.. ..|++.|+.|++||+ +++|+..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~~ 62 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN--------------------KEAEEKFKEINEAYQ-VLSDPQK 62 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHH-HhcCHhh
Confidence 5899999999999999999999999999999997542 357889999999999 5666764
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 63 r~~yD 67 (380)
T PRK14297 63 KAQYD 67 (380)
T ss_pred hCchh
Confidence 44444
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.80 E-value=1.3e-07 Score=89.67 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=80.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..+...|+|++|+.+|.+++.+. +. .+....+++++|.++..+|++++|+..+.+++.++|++..++..+|.++..+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLE-ED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh-hc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 999999999999999999999863 22 2234679999999999999999999999999999999999999999999987
Q ss_pred CC-------hhHHHHHHHHHHHHHH
Q 008039 330 RC-------LPDCLHDLEHLKLLYN 347 (580)
Q Consensus 330 g~-------~~eAi~~~~~al~l~~ 347 (580)
|+ ++.|+..|+++++.+.
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHH
Confidence 76 4455555555555443
No 132
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.79 E-value=4.9e-09 Score=110.85 Aligned_cols=97 Identities=24% Similarity=0.301 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
...+.+++.+++.+.|+.|+..|++||++ +|.++.++.||+.++++.++|..|+.|+.+||+++|.+.++|+++|
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~l-----dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIEL-----DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhc-----CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Confidence 44567799999999999999999999998 4458889999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++..++.|.+|+.+|+....+
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999877
No 133
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=9.8e-09 Score=100.95 Aligned_cols=66 Identities=21% Similarity=0.423 Sum_probs=56.9
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..++|.+||+++++++++|+|+||++++++|||+++..+ .+..+|+.|++||+ |++|+.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P--------------------~~~dkf~eIN~Ay~-ILsD~~ 88 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNP--------------------EATDKFKEINTAYA-ILSDPT 88 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCc--------------------hhHHHHHHHHHHHH-HhcChh
Confidence 568999999999999999999999999999999998753 56789999999999 677776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.|..+.+
T Consensus 89 kR~~YD~ 95 (279)
T KOG0716|consen 89 KRNVYDE 95 (279)
T ss_pred hhhhHHH
Confidence 5555543
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.79 E-value=1e-07 Score=83.45 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~ 324 (580)
..|..+++.|+|++|+..|.+++... |. .+....+++.+|.++...|++++|+..|..++..+|++ ..+++.+|.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY-PK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34999999999999999999999862 32 34457889999999999999999999999999999885 678999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..+|++++|+..|+++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 999999999999999999887
No 135
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.78 E-value=6.8e-08 Score=78.49 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLE 327 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~ 327 (580)
..|..++..|+|.+|+..|.+++... |....+++++|.++...|++++|+..|.+++.+.|.+..+++.+|.++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 34889999999999999999999972 3355889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHH
Q 008039 328 TIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 328 ~lg~~~eAi~~~~~al~l 345 (580)
..|++++|...+++++++
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999998665
No 136
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.8e-07 Score=97.62 Aligned_cols=89 Identities=11% Similarity=-0.038 Sum_probs=59.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
+++|--..+..+||+.|.++..+ .|..+.++..+|..|-+-|+-..|..++-...+.-|.+.+..-.+|.-|...
T Consensus 565 aniye~led~aqaie~~~q~~sl-----ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-----IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 66666666666666666666665 3345666666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLK 343 (580)
Q Consensus 330 g~~~eAi~~~~~al 343 (580)
.-++.|+.+|+++.
T Consensus 640 qf~ekai~y~ekaa 653 (840)
T KOG2003|consen 640 QFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777777764
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.76 E-value=1.6e-06 Score=87.14 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELAL---ELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~---~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
....++..|..++ ..|+|.+|+..|++++...|.++.+. ..+|.+++.+++|++|+..+++++ +..|+++.
T Consensus 31 ~~~~~Y~~A~~~~---~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi---~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKL---QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI---RLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCcCCCc
Confidence 5566778888887 68999999999999999999998665 789999999999999999999976 34443331
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC----
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL---- 174 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~---- 174 (580)
. -++++.+|.+++.++.
T Consensus 105 ~-----------------------------------------------------------~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 105 I-----------------------------------------------------------DYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred h-----------------------------------------------------------HHHHHHHHHhhhhcchhhhh
Confidence 1 2467888887655541
Q ss_pred --------------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHH---HHH
Q 008039 175 --------------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVS---QLL 237 (580)
Q Consensus 175 --------------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~---~ll 237 (580)
..+|+..|++.++.- |++.-.. ..+
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~y--------------------------------------P~S~ya~~A~~rl 167 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRGY--------------------------------------PNSQYTTDATKRL 167 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHHC--------------------------------------cCChhHHHHHHHH
Confidence 245667777766542 3333322 222
Q ss_pred HHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 008039 238 SHIKLLL--RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADC 305 (580)
Q Consensus 238 ~~~k~~~--~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~ 305 (580)
..++..+ +...-|.-+++.|.|..|+.-++.+|+- =|. .+....+++.+..+|..+|..++|....
T Consensus 168 ~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~-t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 168 VFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPD-TQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCC-CchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 2222222 2223466667777777777777777763 122 3445666666777777777766665543
No 138
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.75 E-value=1.3e-08 Score=108.08 Aligned_cols=65 Identities=22% Similarity=0.399 Sum_probs=54.6
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++..+|++|||+++++||||+++... ..|++.|+.|++||+ +++|+..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------------------~~a~~~f~~i~~Ay~-~L~d~~~ 62 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNK-------------------AEAEEKFKEISEAYE-VLSDPQK 62 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch-------------------hHHHHHHHHHHHHHH-HhcChhh
Confidence 58999999999999999999999999999999975421 367899999999999 5666664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 63 r~~yd 67 (365)
T PRK14290 63 RRQYD 67 (365)
T ss_pred hhhhc
Confidence 44444
No 139
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.74 E-value=1.3e-08 Score=105.58 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=53.5
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||++.. ..++..|+.|++||++ ++++..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---------------------~~~~~~f~~i~~Ay~~-L~~~~k 61 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---------------------PDAEARFKEVAEAWEV-LSDEQR 61 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHH-hhhHHH
Confidence 589999999999999999999999999999999643 2578899999999995 566664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 62 r~~yD 66 (306)
T PRK10266 62 RAEYD 66 (306)
T ss_pred HHHHH
Confidence 44444
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.74 E-value=3.6e-07 Score=86.72 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=85.0
Q ss_pred hccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008039 151 CRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES 230 (580)
Q Consensus 151 ~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~ 230 (580)
..+......+.++.+|..+...|++++|+.+|++++.+.+. +.
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------~~- 69 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------------------------------------PN- 69 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------------------------------------cc-
Confidence 33444556778899999999999999999999999876310 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-------------
Q 008039 231 ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR------------- 297 (580)
Q Consensus 231 ~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~------------- 297 (580)
.....++.. |..+++.|+|++|+..|.+++.+ .|.....+.++|.++..+|+
T Consensus 70 ~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 70 DRSYILYNM----------GIIYASNGEHDKALEYYHQALEL-----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred hHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH
Confidence 112223333 99999999999999999999997 34578889999999999998
Q ss_pred -hHHHHHHHHHHHhcCCCc
Q 008039 298 -IAESIADCNKTLALEPSC 315 (580)
Q Consensus 298 -~~eAl~~~~~Al~ldP~~ 315 (580)
+.+|+..+.+++.++|++
T Consensus 135 ~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 135 LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHhhCchh
Confidence 455566666666666654
No 141
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.9e-08 Score=96.63 Aligned_cols=70 Identities=26% Similarity=0.469 Sum_probs=57.5
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+.|.+|||.+++++.+|++||++++|+||||++. ++....+...|+.++++|. |++|-
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~------------------eed~~ea~~kFq~l~k~y~-iLsDe 72 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH------------------EEDKVEATEKFQQLQKAYQ-ILSDE 72 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch------------------hhhHHHHHHHHHHHHHHHH-HhhHH
Confidence 4558999999999999999999999999999999964 2356788999999999999 56665
Q ss_pred hhHHHHHHH
Q 008039 474 MDEEAAEKR 482 (580)
Q Consensus 474 ~~~~~~~~~ 482 (580)
..+..+.++
T Consensus 73 ekR~~YDet 81 (264)
T KOG0719|consen 73 EKRAVYDET 81 (264)
T ss_pred HHHHHHhcc
Confidence 544444433
No 142
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.73 E-value=1.5e-08 Score=107.35 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=52.4
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhhH
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDE 476 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~~ 476 (580)
|||++|||.++++.++|++|||+++++||||+++. ..+++.|+.|++||++ ++++..+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~v-L~d~~~R 58 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---------------------KEAEEKFKEINEAYEV-LSDPEKR 58 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------ccHHHHHHHHHHHHHH-hhChHHH
Confidence 69999999999999999999999999999999752 3567899999999995 6666644
Q ss_pred HHHH
Q 008039 477 EAAE 480 (580)
Q Consensus 477 ~~~~ 480 (580)
..+.
T Consensus 59 ~~yd 62 (354)
T TIGR02349 59 AQYD 62 (354)
T ss_pred Hhhh
Confidence 4443
No 143
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.72 E-value=1.6e-08 Score=107.79 Aligned_cols=63 Identities=22% Similarity=0.428 Sum_probs=52.6
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||++.. ..+++.|+.|++||++ ++++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~-L~d~~~ 60 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---------------------KDAEKKFKEINAAYDV-LKDEQK 60 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------cCHHHHHHHHHHHHHH-hhhHhH
Confidence 589999999999999999999999999999999753 2467789999999995 555654
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 61 r~~yD 65 (372)
T PRK14300 61 RAAYD 65 (372)
T ss_pred hhHHH
Confidence 44443
No 144
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.72 E-value=1.9e-08 Score=107.20 Aligned_cols=64 Identities=27% Similarity=0.480 Sum_probs=54.9
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||++.. ..+++.|+.|++||+ +++++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---------------------~~a~~~~~~i~~Ay~-vL~d~~~ 59 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---------------------KGAAEKFAQINEAYA-VLSDAEK 59 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------hhHHHHHHHHHHHHH-Hhcchhh
Confidence 489999999999999999999999999999999753 357889999999999 5667765
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 60 r~~yd~ 65 (371)
T PRK14292 60 RAHYDR 65 (371)
T ss_pred hhhHhh
Confidence 555554
No 145
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.71 E-value=7.4e-06 Score=89.32 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
|..++-..+|.+|+...|..+.+|.+-|.-.+..|+...|..++..++ +.+|+ +..++...++|...
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af---~~~pn----------seeiwlaavKle~e 630 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAF---EANPN----------SEEIWLAAVKLEFE 630 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH---HhCCC----------cHHHHHHHHHHhhc
Confidence 677778889999999999999999999999999999999999888865 33332 23444555555443
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESIS 199 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~ 199 (580)
+.. . +--+++++.-......+.+| +.-+.....+|+.++|+.+++.+++.-
T Consensus 631 n~e----------------~-eraR~llakar~~sgTeRv~--mKs~~~er~ld~~eeA~rllEe~lk~f---------- 681 (913)
T KOG0495|consen 631 NDE----------------L-ERARDLLAKARSISGTERVW--MKSANLERYLDNVEEALRLLEEALKSF---------- 681 (913)
T ss_pred ccc----------------H-HHHHHHHHHHhccCCcchhh--HHHhHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 310 0 11123333222223334444 444677888999999999999998752
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008039 200 LSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG 279 (580)
Q Consensus 200 ~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~ 279 (580)
|+.......+ |.++-..++.+.|-..|...+..+ |
T Consensus 682 ----------------------------p~f~Kl~lml------------GQi~e~~~~ie~aR~aY~~G~k~c-----P 716 (913)
T KOG0495|consen 682 ----------------------------PDFHKLWLML------------GQIEEQMENIEMAREAYLQGTKKC-----P 716 (913)
T ss_pred ----------------------------CchHHHHHHH------------hHHHHHHHHHHHHHHHHHhccccC-----C
Confidence 5556555554 899999999999999999999974 4
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
....+|..++..--+.|+.-.|...++++.--||.+...|+..-.+-+..|..+.|.....+|++-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577889999999999999999999999999999999999999999999999999999999999655
No 146
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.2e-07 Score=95.61 Aligned_cols=144 Identities=19% Similarity=0.103 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
.-..|..||+.|+|..|+..|++++..-.. ...+ +++...... --
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~----------~~~~---------------------~~ee~~~~~----~~ 255 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEY----------RRSF---------------------DEEEQKKAE----AL 255 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhc----------cccC---------------------CHHHHHHHH----HH
Confidence 445699999999999999999999876311 1111 111111111 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
.+..+.+.+.++.+.++|.+|+.+++++|.+ ++.|..++|.+|.|++.+|+|+.|+.+|.++++++|+|-.+...
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLEL-----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 2334455689999999999999999999997 45589999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHH-HHHHHHHHHH
Q 008039 322 RALLLETIRCLPDC-LHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eA-i~~~~~al~l 345 (580)
+..+..+..++.+. ...|.++...
T Consensus 331 l~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 331 LIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998888887766 5667666543
No 147
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=7.4e-07 Score=94.58 Aligned_cols=130 Identities=18% Similarity=0.043 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
.-.+|..+..++..|.+++|...++..+.. -|++.....+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------------------------------------~P~N~~~~~~~- 346 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------------------------------------QPDNPYYLELA- 346 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------------------------------------CCCCHHHHHHH-
Confidence 345677888999999999999999986643 15555544444
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|.++++.++..+|++.+.+++.+ .|....+..|+|.++++.|++.+|+..+++.+.-+|+++..
T Consensus 347 -----------~~i~~~~nk~~~A~e~~~kal~l-----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~ 410 (484)
T COG4783 347 -----------GDILLEANKAKEAIERLKKALAL-----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410 (484)
T ss_pred -----------HHHHHHcCChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence 89999999999999999999997 45578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
|..+|++|..+|+-.+|...+-...
T Consensus 411 w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 411 WDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999888888777766654443
No 148
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=2.8e-08 Score=106.49 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=54.0
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|++|++||++ ++++.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------------------~~a~~~f~~i~~Ay~~-L~d~~ 62 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--------------------KEAEEKFKEAAEAYDV-LSDPD 62 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------hHHHHHHHHHHHHHHH-hcCHH
Confidence 36999999999999999999999999999999997642 3578899999999995 55665
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 63 ~R~~yD 68 (386)
T PRK14289 63 KRSRYD 68 (386)
T ss_pred HHHHHH
Confidence 444333
No 149
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.68 E-value=2.9e-08 Score=112.48 Aligned_cols=66 Identities=14% Similarity=0.298 Sum_probs=55.9
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++|+..+|++|||++|++||||+++. ..|...|+.|++||+ +|+|+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---------------------~~A~ekFq~I~EAYe-VLSDp 628 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---------------------NEGFHKFKKINEAYQ-ILGDI 628 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------------------chHHHHHHHHHHHHH-HhCCH
Confidence 45689999999999999999999999999999999865 135678999999999 57778
Q ss_pred hhHHHHHH
Q 008039 474 MDEEAAEK 481 (580)
Q Consensus 474 ~~~~~~~~ 481 (580)
..+..+.+
T Consensus 629 ~kRk~YD~ 636 (1136)
T PTZ00341 629 DKKKMYNK 636 (1136)
T ss_pred HHHHHHhh
Confidence 75555543
No 150
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=3.7e-08 Score=99.26 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
|..|--....+|..- ..+++++|+++|..++.++|.+.+++...|.-|+.-++.+-|+..|++++. + |.
T Consensus 287 P~~VT~l~g~ARi~e---am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq---m-----G~ 355 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHE---AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ---M-----GA 355 (478)
T ss_pred CchhhhhhhhHHHHH---HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH---h-----cC
Confidence 333444445555443 468899999999999999999999999999999999999999999999662 2 00
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
. .+ ..+.++|.||+..+++|-++
T Consensus 356 ~------------------------------sp---------------------------eLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 356 Q------------------------------SP---------------------------ELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred C------------------------------Ch---------------------------HHHhhHHHHHHhhcchhhhH
Confidence 0 00 14778999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 180 ~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
..|++++...+. +.....-+++. |.++...|++
T Consensus 379 ~sf~RAlstat~-------------------------------------~~~aaDvWYNl----------g~vaV~iGD~ 411 (478)
T KOG1129|consen 379 PSFQRALSTATQ-------------------------------------PGQAADVWYNL----------GFVAVTIGDF 411 (478)
T ss_pred HHHHHHHhhccC-------------------------------------cchhhhhhhcc----------ceeEEeccch
Confidence 999999876421 22334445555 8899999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
.-|-++|.-+|.- ++.+..+|+|+|..-.+.|+.++|...++.|-.+.|+-.+..++++.+
T Consensus 412 nlA~rcfrlaL~~-----d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 412 NLAKRCFRLALTS-----DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHHHHHHHhcc-----CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999984 445899999999999999999999999999999999998888877654
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.68 E-value=9.3e-07 Score=90.88 Aligned_cols=206 Identities=15% Similarity=0.104 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHhh---------ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 22 IVDKYIRDARTLIATQ---------EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~---------~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
..++++++|...+... ...|+++|.++|++| |.++...++|++|.++|.++... ..
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~-~~ 66 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADC-YE 66 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHH-HH
Confidence 3466777777766432 123788888777776 78888999999999999996522 11
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
..++. ......|...+.+|...
T Consensus 67 ~~~~~----------------------------------------------------------~~Aa~~~~~Aa~~~k~~ 88 (282)
T PF14938_consen 67 KLGDK----------------------------------------------------------FEAAKAYEEAANCYKKG 88 (282)
T ss_dssp HTT-H----------------------------------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HcCCH----------------------------------------------------------HHHHHHHHHHHHHHHhh
Confidence 00000 00112355556666555
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
++++|+..|++++.+-... -....+... +...|..
T Consensus 89 -~~~~Ai~~~~~A~~~y~~~-----------------------------------G~~~~aA~~---------~~~lA~~ 123 (282)
T PF14938_consen 89 -DPDEAIECYEKAIEIYREA-----------------------------------GRFSQAAKC---------LKELAEI 123 (282)
T ss_dssp -THHHHHHHHHHHHHHHHHC-----------------------------------T-HHHHHHH---------HHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhc-----------------------------------CcHHHHHHH---------HHHHHHH
Confidence 9999999999999874220 011222221 2233888
Q ss_pred HHHc-CCHHHHHHHHHHHHhccCCCC-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------cH-HHHHHHH
Q 008039 253 ALDA-GLYSEAIRHFSKIVDGRRGAP-QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS------CI-QALDTRA 323 (580)
Q Consensus 253 ~~~~-g~y~eAi~~y~~AL~~~~~~~-~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~------~~-~A~~~ra 323 (580)
+... |++++|+++|.+|+++-.... ......++.+.|.++..+|+|++|+..|++++...-+ .+ +.++..+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 8888 999999999999999732221 2334678889999999999999999999999874211 23 3457788
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|++..||+..|...|++....
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999999999999988544
No 152
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=3.8e-07 Score=100.44 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=64.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|.++.+.++++.|+..|..++.+ .|.+...|+|++.+|+++|+-.+|...+.+|++-+-++.+.|-+.-.+....
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL-----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTL-----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhc-----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 66777777777777777777775 3446677777777777777777777777777777766677777777777777
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|.+++|+..|.+.+.+
T Consensus 601 ge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDL 616 (777)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 7777777777776665
No 153
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.67 E-value=2.9e-08 Score=105.90 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=53.3
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++..+|++|||++++++|||+++. ..++..|+.|++||++ ++++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~a~~~f~~i~~Ay~v-L~~~~~ 60 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---------------------PGAEDRFKEINRAYEV-LSDPET 60 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------cCHHHHHHHHHHHHHH-HhchHH
Confidence 589999999999999999999999999999999754 2467889999999995 566664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 61 R~~yd 65 (374)
T PRK14293 61 RARYD 65 (374)
T ss_pred HHHHh
Confidence 54444
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.66 E-value=8.3e-07 Score=91.22 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=144.5
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC-----C-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALS-----P-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~-----P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
+-+...+++..|-..+. ..|++.+|.+.|.+|..+. + ....++..-+.++... ++++|+++|++++.....
T Consensus 30 ~~e~Aa~~y~~Aa~~fk--~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFK--LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHH--HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 33455555566655553 5688999999999987654 2 2234566666666555 999999999998743222
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.+. + ... .-.+..+|.+|...
T Consensus 107 ~G~-~-----------------------------------------------~~a-----------A~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 107 AGR-F-----------------------------------------------SQA-----------AKCLKELAEIYEEQ 127 (282)
T ss_dssp CT--H-----------------------------------------------HHH-----------HHHHHHHHHHHCCT
T ss_pred cCc-H-----------------------------------------------HHH-----------HHHHHHHHHHHHHH
Confidence 110 0 000 11456789999998
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 -GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 173 -G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
|++++|+.+|++++.+-... ......... +...|.
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e-----------------------------------~~~~~a~~~---------~~~~A~ 163 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQE-----------------------------------GSPHSAAEC---------LLKAAD 163 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHT-----------------------------------T-HHHHHHH---------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHC-----------------------------------CChhhHHHH---------HHHHHH
Confidence 99999999999999884320 011111111 223388
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCC-CcccH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-----HHHHHHHH
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAP-QGFLA-ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-----QALDTRAL 324 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~-~~~~a-~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-----~A~~~ra~ 324 (580)
.+.+.|+|++|+..|.+++......+ ....+ ..+++.+.|++.+|++-.|...+++....+|.+. +....+-.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999988521111 11223 4677889999999999999999999999999773 34444455
Q ss_pred HHHh--cCChhHHHHHHHHHHHH
Q 008039 325 LLET--IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~--lg~~~eAi~~~~~al~l 345 (580)
++.. ...|++|+.+|.+..+|
T Consensus 244 A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHhCCHHHHHHHHHHHcccCcc
Confidence 5543 56789999999888655
No 155
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=3.7e-06 Score=93.22 Aligned_cols=92 Identities=22% Similarity=0.149 Sum_probs=83.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
.+..+.+.+.-++|..+..++-.+ .+..+..|+.+|.++...|++.+|...|..|+.+||+++.....+|.++..
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 466777788888888899999887 567899999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHH--HHHHHHHH
Q 008039 329 IRCLPDCLH--DLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~--~~~~al~l 345 (580)
.|+-.-|.. .+..++++
T Consensus 731 ~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred hCCcchHHHHHHHHHHHhh
Confidence 999888877 88888777
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.65 E-value=1.2e-07 Score=74.72 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=46.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
|..++..|+|++|+..|++++.. .|.+..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ-----DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC-----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 77777788888888888888775 345777778888888888888888888888888777764
No 157
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=6.6e-07 Score=88.31 Aligned_cols=91 Identities=19% Similarity=0.090 Sum_probs=86.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|.+|+..+.++..+ .|.++.+|+-+|.+|.++|++++|-..|.+++++.|+.+..+.++|..+.-.
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAARL-----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhcc-----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 89999999999999999999997 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|+++.|...+.++...
T Consensus 182 gd~~~A~~lll~a~l~ 197 (257)
T COG5010 182 GDLEDAETLLLPAYLS 197 (257)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999544
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.64 E-value=7.3e-07 Score=77.92 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSH 239 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~ 239 (580)
.++.+|..+...|++++|+..|++++... |++.. ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l 45 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--------------------------------------PKSTYAPNAHYWL 45 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------------------CCccccHHHHHHH
Confidence 47889999999999999999999988652 22111 1122223
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|.++++.|+|++|+..|.+++.. .|. .+....+++++|.++..+|++++|+..+++++...|++..+.
T Consensus 46 ----------~~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 46 ----------GEAYYAQGKYADAAKAFLAVVKK-YPK-SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred ----------HHHHHhhccHHHHHHHHHHHHHH-CCC-CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999996 343 344578899999999999999999999999999999987754
Q ss_pred H
Q 008039 320 D 320 (580)
Q Consensus 320 ~ 320 (580)
.
T Consensus 114 ~ 114 (119)
T TIGR02795 114 L 114 (119)
T ss_pred H
Confidence 3
No 159
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.5e-08 Score=99.64 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=58.4
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++..||++||++||.++|||-+.. ..|...|+.|.+||| ++++..
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---------------------~~a~~kF~eI~~AYE-iLsd~e 99 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---------------------KEASKKFKEISEAYE-ILSDEE 99 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---------------------cchhhHHHHHHHHHH-HhcCHH
Confidence 3389999999999999999999999999999998765 478899999999999 566677
Q ss_pred hHHHHHHHHH
Q 008039 475 DEEAAEKRRK 484 (580)
Q Consensus 475 ~~~~~~~~~~ 484 (580)
++.++.....
T Consensus 100 KR~~YD~~~~ 109 (288)
T KOG0715|consen 100 KRQEYDVYGL 109 (288)
T ss_pred HHHHHHHhhh
Confidence 6777766554
No 160
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.62 E-value=2.5e-06 Score=98.69 Aligned_cols=232 Identities=13% Similarity=0.065 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALS-PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~-P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
..|+++.|..++..+++.. +.+...+..+...|.+.|++++|...|++... | |..+++ .+ ..-
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~-d~~t~n------~l----I~~ 400 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----K-NLISWN------AL----IAG 400 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----C-CeeeHH------HH----HHH
Confidence 4588888999888888876 45567777888888889999999988887431 1 111111 00 000
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
+.... ..+. --.++..+....-.+....|..+-.+|.+.|++++|..+|+...+-.
T Consensus 401 y~~~G-------~~~~----------A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~------- 456 (697)
T PLN03081 401 YGNHG-------RGTK----------AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH------- 456 (697)
T ss_pred HHHcC-------CHHH----------HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-------
Confidence 00000 0000 00111111111122223345566677788888888888777654310
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
...|+...... ....+.+.|++++|.+.+.+.--
T Consensus 457 ----------------------------g~~p~~~~y~~-------------li~~l~r~G~~~eA~~~~~~~~~----- 490 (697)
T PLN03081 457 ----------------------------RIKPRAMHYAC-------------MIELLGREGLLDEAYAMIRRAPF----- 490 (697)
T ss_pred ----------------------------CCCCCccchHh-------------HHHHHHhcCCHHHHHHHHHHCCC-----
Confidence 00122211111 16778899999999999876421
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLP 356 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p 356 (580)
.| +...|..+..++...|+++.|...+++.+.++|++...|..+..+|...|++++|...++...+. .-.+.|
T Consensus 491 -~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-----g~~k~~ 563 (697)
T PLN03081 491 -KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-----GLSMHP 563 (697)
T ss_pred -CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCccCC
Confidence 12 46678999999999999999999999999999999999999999999999999999999988544 123456
Q ss_pred Cccccc
Q 008039 357 GPAWKR 362 (580)
Q Consensus 357 ~~~w~~ 362 (580)
|-+|..
T Consensus 564 g~s~i~ 569 (697)
T PLN03081 564 ACTWIE 569 (697)
T ss_pred CeeEEE
Confidence 777743
No 161
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=7.3e-08 Score=91.87 Aligned_cols=68 Identities=25% Similarity=0.388 Sum_probs=55.3
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
..-|.|.+||+++++++.|||++||+|++++||||++... .-+..|..|.+||+.|++ .
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~--------------------~~e~~~~~I~KAY~aLTD-~ 155 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEE--------------------GDEEFFEAIAKAYQALTD-K 155 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcc--------------------hhHHHHHHHHHHHHHhcc-h
Confidence 4678999999999999999999999999999999986642 336789999999996554 5
Q ss_pred hhHHHHHHH
Q 008039 474 MDEEAAEKR 482 (580)
Q Consensus 474 ~~~~~~~~~ 482 (580)
..+|..++=
T Consensus 156 ~sreN~ekY 164 (230)
T KOG0721|consen 156 KSRENWEKY 164 (230)
T ss_pred hhHHHHHHh
Confidence 445555543
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.60 E-value=3.6e-06 Score=82.25 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL---ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~---~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
....++..|..++ ..|+|.+|+..|++.+...|.+ +.++..+|.+++..|+|.+|+..+++++. .-|..+
T Consensus 4 ~~~~lY~~a~~~~---~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~---~yP~~~- 76 (203)
T PF13525_consen 4 TAEALYQKALEAL---QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK---LYPNSP- 76 (203)
T ss_dssp -HHHHHHHHHHHH---HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---H-TT-T-
T ss_pred CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCc-
Confidence 3456778888888 7999999999999999987755 47788999999999999999999999773 223211
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC-----
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG----- 173 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG----- 173 (580)
..-++++.+|.+++.+.
T Consensus 77 ----------------------------------------------------------~~~~A~Y~~g~~~~~~~~~~~~ 98 (203)
T PF13525_consen 77 ----------------------------------------------------------KADYALYMLGLSYYKQIPGILR 98 (203)
T ss_dssp ----------------------------------------------------------THHHHHHHHHHHHHHHHHHHH-
T ss_pred ----------------------------------------------------------chhhHHHHHHHHHHHhCccchh
Confidence 01246777788776653
Q ss_pred ------CHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH--
Q 008039 174 ------LMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR-- 245 (580)
Q Consensus 174 ------~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~-- 245 (580)
...+|+..|+..++.-|. .+--..+...+..++..+.
T Consensus 99 ~~~D~~~~~~A~~~~~~li~~yP~-----------------------------------S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 99 SDRDQTSTRKAIEEFEELIKRYPN-----------------------------------SEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp TT---HHHHHHHHHHHHHHHH-TT-----------------------------------STTHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHCcC-----------------------------------chHHHHHHHHHHHHHHHHHHH
Confidence 345788888877755211 0122333333434433332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIA 299 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~ 299 (580)
...-|.-+++.|.|..|+.-|..+|+- =|+ .+....++..++.+|.++|...
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~-t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIEN-YPD-TPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHH-STT-SHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCC-CchHHHHHHHHHHHHHHhCChH
Confidence 234477777888888888888887774 232 3445567777777777777766
No 163
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.60 E-value=1.8e-05 Score=82.21 Aligned_cols=235 Identities=17% Similarity=0.153 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
..-.++..++.++ .+||+..|.+-++++++..|+++..+.+..++|+.+|+|.+....+.+ +..+.--.
T Consensus 152 ~l~v~ltrarlll---~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~----L~ka~~l~---- 220 (400)
T COG3071 152 TLAVELTRARLLL---NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK----LRKAGLLS---- 220 (400)
T ss_pred hHHHHHHHHHHHH---hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH----HHHccCCC----
Confidence 3444566777777 689999999999999999999999999999999999999999986665 32221100
Q ss_pred CCchhhHhHHH-HHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhcccc-c--cchhHHHHHHHHHHhcCCHHH
Q 008039 102 SDSSSQQLSRE-RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCE-K--EGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 102 ~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~-~--~~~~~~~~LG~a~~~lG~~ee 177 (580)
++....++.+ -..++..-++..+ +.+ + + .-.++-+ + ........++.=+..+|+.++
T Consensus 221 -~~e~~~le~~a~~glL~q~~~~~~--~~g---L--------~-----~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~ 281 (400)
T COG3071 221 -DEEAARLEQQAWEGLLQQARDDNG--SEG---L--------K-----TWWKNQPRKLRNDPELVVAYAERLIRLGDHDE 281 (400)
T ss_pred -hHHHHHHHHHHHHHHHHHHhcccc--chH---H--------H-----HHHHhccHHhhcChhHHHHHHHHHHHcCChHH
Confidence 0000111111 1111221111000 000 0 0 0000000 0 000012234666789999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|.+....+++-. -|| . ...++ ...+-+
T Consensus 282 A~~~i~~~Lk~~------------------------------------~D~--~-L~~~~--------------~~l~~~ 308 (400)
T COG3071 282 AQEIIEDALKRQ------------------------------------WDP--R-LCRLI--------------PRLRPG 308 (400)
T ss_pred HHHHHHHHHHhc------------------------------------cCh--h-HHHHH--------------hhcCCC
Confidence 999999887541 012 1 22222 234678
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++..=++..++.+.. .|..+.+++.+|..+++.+.|.+|-.+++.||...|+ ...+..+|.+|.++|+..+|-.
T Consensus 309 d~~~l~k~~e~~l~~-----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 309 DPEPLIKAAEKWLKQ-----HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred CchHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 888888888888886 4557799999999999999999999999999999875 6678889999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.++.++.+
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99999866
No 164
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.59 E-value=3.5e-08 Score=100.30 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 230 SESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 230 ~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
+..+......+......+.++..++..|.+++||++|+.+|.+ .|..+.+|.+|+.++++++++..||.||..||
T Consensus 101 ds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l-----np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 101 DSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL-----NPPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc-----CCchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 3445555566677778889999999999999999999999998 45589999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 310 ~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+..+.|-.+|.++..+|+|++|..+|..+.++
T Consensus 176 ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 176 EINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999887
No 165
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.59 E-value=9.1e-08 Score=83.74 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=46.0
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
...++|++|||.++++.++|+++||++++++|||+.++ ..+|+.|++||++|+
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs------------------------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS------------------------TYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------------------------HHHHHHHHHHHHHHh
Confidence 34689999999999999999999999999999998422 246889999999874
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=8.4e-06 Score=80.16 Aligned_cols=169 Identities=17% Similarity=0.065 Sum_probs=122.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
.-|+..-|...+++...-.|.|.....++|..|-..|+|++|++.|+..+ ..+|.|..
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL---~ddpt~~v------------------- 121 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLL---EDDPTDTV------------------- 121 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHh---ccCcchhH-------------------
Confidence 44777788888888887779998888889999999999999999888844 23232220
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.+-..-.+.-.+|+--+||+.+..-+..-
T Consensus 122 -------------------------------------------~~KRKlAilka~GK~l~aIk~ln~YL~~F-------- 150 (289)
T KOG3060|consen 122 -------------------------------------------IRKRKLAILKAQGKNLEAIKELNEYLDKF-------- 150 (289)
T ss_pred -------------------------------------------HHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------
Confidence 11112234566778778888887776542
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP 277 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~ 277 (580)
.-|.+.+..+ +..|+..|+|..|+-+|.+.+-+
T Consensus 151 -----------------------------~~D~EAW~eL-------------aeiY~~~~~f~kA~fClEE~ll~----- 183 (289)
T KOG3060|consen 151 -----------------------------MNDQEAWHEL-------------AEIYLSEGDFEKAAFCLEELLLI----- 183 (289)
T ss_pred -----------------------------cCcHHHHHHH-------------HHHHHhHhHHHHHHHHHHHHHHc-----
Confidence 1233433333 78888999999999999998886
Q ss_pred CcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 278 QGFLAECYMHRAFAYRSSG---RIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg---~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
.|+++.++..+|.+++-+| ++.-|..+|.++|+++|.+..+++.+--+-
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 6778888888888888776 466788899999999998888887665444
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=7.1e-07 Score=72.34 Aligned_cols=99 Identities=24% Similarity=0.385 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|.+++..|++++|+..+++++++. |....+ ++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~--~~~~- 40 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------------------------------------PDNADA--YYNL- 40 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------------------------------------CccHHH--HHHH-
Confidence 36788999999999999999999988652 322222 2222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
|..++..|++++|+..|.+++... +....+++.+|.++..+|++++|+..+.+++.++|+
T Consensus 41 ---------~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 41 ---------AAAYYKLGKYEEALEDYEKALELD-----PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhCC-----CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 899999999999999999999972 334578999999999999999999999999998874
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=98.58 E-value=4.7e-07 Score=84.16 Aligned_cols=100 Identities=12% Similarity=0.030 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 230 SESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 230 ~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
.+....++.. |-.+|..|+|++|...|+-...+ ++.+...++.+|.|+..+|+|+.|+..|..|.
T Consensus 34 ~~~le~iY~~----------Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 34 QDMMDGLYAH----------AYEFYNQGRLDEAETFFRFLCIY-----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHHHHHHHHH----------HHHHHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 99999999999999999998886 45578899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 310 ~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
.++++++...+..|.|++.+|+.+.|+..|+.+++
T Consensus 99 ~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 99 TLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999965
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.56 E-value=1.3e-07 Score=78.70 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 39 HSEIASALSLLDAALALSPR--LELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~--~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
+|+|+.|+..|+++++.+|. +..++..+|.||+.+|+|++|+..+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999999999995 567788899999999999999999887
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.55 E-value=3e-07 Score=72.35 Aligned_cols=60 Identities=22% Similarity=0.130 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 286 MHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 286 ~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999888
No 171
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=1.5e-06 Score=100.36 Aligned_cols=157 Identities=10% Similarity=-0.042 Sum_probs=125.5
Q ss_pred HHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCC
Q 008039 52 ALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRD 131 (580)
Q Consensus 52 Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 131 (580)
+...+|.+..++..+...+...+++++|++.|+..+ +..|+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l---~~~P~~----------------------------------- 64 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHL---KEHKKS----------------------------------- 64 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCcc-----------------------------------
Confidence 456789999999999999999999999999999744 222211
Q ss_pred CCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCC
Q 008039 132 PSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFP 211 (580)
Q Consensus 132 ~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~ 211 (580)
...|+.+|.+++..+++.++... .++
T Consensus 65 ---------------------------i~~yy~~G~l~~q~~~~~~~~lv--~~l------------------------- 90 (906)
T PRK14720 65 ---------------------------ISALYISGILSLSRRPLNDSNLL--NLI------------------------- 90 (906)
T ss_pred ---------------------------eehHHHHHHHHHhhcchhhhhhh--hhh-------------------------
Confidence 11467789999999998888654 322
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q 008039 212 VSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFA 291 (580)
Q Consensus 212 ~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a 291 (580)
.......+| .++++|...|.- .+.+-.+++.+|.|
T Consensus 91 ---------------------------------------~~~~~~~~~-~~ve~~~~~i~~-----~~~~k~Al~~LA~~ 125 (906)
T PRK14720 91 ---------------------------------------DSFSQNLKW-AIVEHICDKILL-----YGENKLALRTLAEA 125 (906)
T ss_pred ---------------------------------------hhcccccch-hHHHHHHHHHHh-----hhhhhHHHHHHHHH
Confidence 222334566 677777766663 34466799999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 292 YRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 292 ~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|-++|++++|+..++++|++||+++.++.++|..|... ++++|+..+.+|+..+
T Consensus 126 Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 126 YAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999998774
No 172
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.55 E-value=3.7e-06 Score=77.52 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=79.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|..++.. .++ ......+.++++.+++..|+|++|+..+.. +.-.+-.+.++..+|.++...
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~-~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALAN-APD-PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-CCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC
Confidence 99999999999999999999995 222 355678899999999999999999999966 444555677899999999999
Q ss_pred CChhHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLK 343 (580)
Q Consensus 330 g~~~eAi~~~~~al 343 (580)
|++++|+..|++++
T Consensus 132 g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 132 GDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999999873
No 173
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.54 E-value=2e-07 Score=88.35 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=53.5
Q ss_pred chhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 397 DYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 397 d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+||++|||++. .+..+|+++|++++.++|||+..+.... .+..+...|..|++||++| +++.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~---------------~~~~a~~~s~~iN~AY~~L-~dp~ 65 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASER---------------ERLLAVQQAATINDAYQTL-KHPL 65 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHH---------------HHHHHHHHHHHHHHHHHHH-CChh
Confidence 79999999986 6789999999999999999997654322 4466888999999999965 5565
Q ss_pred hHHHH
Q 008039 475 DEEAA 479 (580)
Q Consensus 475 ~~~~~ 479 (580)
.+..+
T Consensus 66 ~Ra~Y 70 (171)
T PRK05014 66 KRAEY 70 (171)
T ss_pred HHHHH
Confidence 44444
No 174
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=3e-05 Score=78.68 Aligned_cols=191 Identities=16% Similarity=0.152 Sum_probs=137.7
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
.|=++.|...|....+..-.-..++..+..+|-..+.+++||+.-++.. ++.++
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~---k~~~q----------------------- 173 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV---KLGGQ----------------------- 173 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HcCCc-----------------------
Confidence 3556677777777776666666777777777777777777777655532 11110
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
+. ..-++. -|.-|++.+....+++.|+..+.++++-+
T Consensus 174 ------------~~-----------~~eIAq-----------fyCELAq~~~~~~~~d~A~~~l~kAlqa~--------- 210 (389)
T COG2956 174 ------------TY-----------RVEIAQ-----------FYCELAQQALASSDVDRARELLKKALQAD--------- 210 (389)
T ss_pred ------------cc-----------hhHHHH-----------HHHHHHHHHhhhhhHHHHHHHHHHHHhhC---------
Confidence 00 001111 25667888888889999999999998753
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
|.+.-+...+ |.++...|+|+.|++.+..+++-+ .
T Consensus 211 -----------------------------~~cvRAsi~l------------G~v~~~~g~y~~AV~~~e~v~eQn----~ 245 (389)
T COG2956 211 -----------------------------KKCVRASIIL------------GRVELAKGDYQKAVEALERVLEQN----P 245 (389)
T ss_pred -----------------------------ccceehhhhh------------hHHHHhccchHHHHHHHHHHHHhC----h
Confidence 3333333333 999999999999999999999962 3
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
.+.+.+.-.+-.||..+|+.++.+..+.++.+..++ +.+...++..-....-.++|...+.+-+.
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 457788888999999999999999999999998764 55667777888888888888877766543
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.53 E-value=2.9e-06 Score=80.12 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=84.8
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH-HHHH
Q 008039 157 EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE-SVSQ 235 (580)
Q Consensus 157 ~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~-~~~~ 235 (580)
.....|+.+|.++..+|++++|+..|++++.+. |++. ....
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--------------------------------------~~~~~~~~~ 74 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--------------------------------------IDPYDRSYI 74 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------------------------------------ccchhhHHH
Confidence 345567889999999999999999999998762 1111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHH-------HcCChHHH-------
Q 008039 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYR-------SSGRIAES------- 301 (580)
Q Consensus 236 ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~-------~lg~~~eA------- 301 (580)
+... |..+...|++++|+..|.+++.+ .|.....+.++|.++. .+|++++|
T Consensus 75 ~~~l----------g~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 75 LYNI----------GLIHTSNGEHTKALEYYFQALER-----NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHH----------HHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3333 99999999999999999999997 2335566777777777 88887754
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 302 IADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 302 l~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
+..+.+++.++|++.. ..+..+..+|+|
T Consensus 140 ~~~~~~a~~~~p~~~~---~~~~~~~~~~~~ 167 (168)
T CHL00033 140 AEYWKQAIALAPGNYI---EAQNWLKITGRF 167 (168)
T ss_pred HHHHHHHHHhCcccHH---HHHHHHHHhcCC
Confidence 5555566777886653 233444445544
No 176
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.53 E-value=2.3e-05 Score=85.53 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhh
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPS 89 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~ 89 (580)
..|+..+..+. ..+-++-|...|-.+|...|.....|.--+..=-.-|..++-...+++++..
T Consensus 517 ~tw~~da~~~~---k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 517 STWLDDAQSCE---KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred hHHhhhHHHHH---hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34445555544 3455666777777778888877666655444444566666666667775533
No 177
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=8.8e-07 Score=97.60 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=85.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|...+..++|.++..+++..+++ .|.....|+++|.|..+++++..|..+|.+++.++|++..+|.+++.+|..+
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 66778899999999999999998 5668899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
++-.+|...++++++.
T Consensus 567 ~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKC 582 (777)
T ss_pred hhhHHHHHHHHHHhhc
Confidence 9999999999998765
No 178
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.51 E-value=1.7e-07 Score=95.11 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=52.7
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
...++|++|||.++++.++|+++||+++.+||||+..+.... ++....+.+.|+.|++||++|.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~-------------~~~~~~a~ek~~~I~~AYe~L~ 261 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLP-------------PEMMEMAKEKAQEIQAAYELIK 261 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCC-------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999996432111 1234678999999999999764
No 179
>PLN03077 Protein ECB2; Provisional
Probab=98.51 E-value=8.3e-06 Score=96.56 Aligned_cols=197 Identities=10% Similarity=0.083 Sum_probs=146.1
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|++++|+..|+.. +.+...|..+...|...|+.++|++.|++.+.. ..
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~------------------------- 585 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GV------------------------- 585 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-------------------------
Confidence 357888888888876 556788888888999999999999988874411 01
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.|+ . ..|..+-.+|.+.|++++|..+|+...+..
T Consensus 586 ~Pd-----------------------------------~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-------- 619 (857)
T PLN03077 586 NPD-----------------------------------E---VTFISLLCACSRSGMVTQGLEYFHSMEEKY-------- 619 (857)
T ss_pred CCC-----------------------------------c---ccHHHHHHHHhhcChHHHHHHHHHHHHHHh--------
Confidence 111 1 124445568999999999999999866321
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP 277 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~ 277 (580)
...|+...... + ...+.+.|++++|.+.+++. .+ .|
T Consensus 620 ---------------------------gi~P~~~~y~~-l------------v~~l~r~G~~~eA~~~~~~m-~~-~p-- 655 (857)
T PLN03077 620 ---------------------------SITPNLKHYAC-V------------VDLLGRAGKLTEAYNFINKM-PI-TP-- 655 (857)
T ss_pred ---------------------------CCCCchHHHHH-H------------HHHHHhCCCHHHHHHHHHHC-CC-CC--
Confidence 01243322221 1 77889999999999998874 22 12
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCC
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPG 357 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~ 357 (580)
+..+|..+-.++..-|+.+.+....++.++++|++...|..++.+|...|+|++|....+...+. .-.+.||
T Consensus 656 ---d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-----g~~k~~g 727 (857)
T PLN03077 656 ---DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-----GLTVDPG 727 (857)
T ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCCCC
Confidence 35667666667777899999999999999999999999999999999999999999999888654 2345678
Q ss_pred ccccc
Q 008039 358 PAWKR 362 (580)
Q Consensus 358 ~~w~~ 362 (580)
-+|..
T Consensus 728 ~s~ie 732 (857)
T PLN03077 728 CSWVE 732 (857)
T ss_pred ccEEE
Confidence 88864
No 180
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.50 E-value=2.6e-05 Score=85.21 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=142.5
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
..+...+ +.+.|...|.+++..|+-.|.+...+.++|..|..+|+-++|.+.++..+. +|.
T Consensus 12 ~~~lk~y---E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr------~d~---------- 72 (700)
T KOG1156|consen 12 RRALKCY---ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR------NDL---------- 72 (700)
T ss_pred HHHHHHH---HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc------cCc----------
Confidence 4444444 688999999999999999999999999999999999999999999888551 111
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
.+-. -|+++|.++....++++||.+|+.|+.
T Consensus 73 ------------------------~S~v-------------------------CwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 73 ------------------------KSHV-------------------------CWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred ------------------------ccch-------------------------hHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 1112 378899999999999999999999997
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH----HHHHHH-----------------
Q 008039 188 LATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI----KLLLRR----------------- 246 (580)
Q Consensus 188 l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~----k~~~~~----------------- 246 (580)
+. |++..+..-+..+ ++..-+
T Consensus 104 ~~--------------------------------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 104 IE--------------------------------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred cC--------------------------------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence 73 4444433322211 111111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhccC--CC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 247 -RTAAIAALDAGLYSEAIRHFSKIVDGRR--GA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 247 -k~~G~~~~~~g~y~eAi~~y~~AL~~~~--~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
.--+..++-.|+|..|+......+.... +. ..-....+...+...+.+.|.+++|++....-=.---+.......+
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~k 225 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhH
Confidence 1225566667777777777766666431 11 0111345556666777777777777665544211111233445667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.+++.++++++|+..|...+..
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhh
Confidence 78888888888888888887655
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.49 E-value=4.3e-06 Score=81.71 Aligned_cols=168 Identities=23% Similarity=0.329 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~ 324 (580)
..|..++..|+|.+|+..|++.+..- |. .+....+.+.+|.++++.|+|.+|+..+++-|...|++ ..+++.+|.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY-PN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH--TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 34999999999999999999999863 43 56788999999999999999999999999999999987 468999999
Q ss_pred HHHhcC-----------ChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCC
Q 008039 325 LLETIR-----------CLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGET 393 (580)
Q Consensus 325 ~~~~lg-----------~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~ 393 (580)
++..+. ...+|+..|+..+..+ |+..+ ...+..++..++.+++..+-
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---------P~S~y-------------~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY---------PNSEY-------------AEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----------TTSTT-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHC---------cCchH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 977653 2357888888887774 44322 12334444445544444444
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSV 469 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l 469 (580)
....||-..|-. ..-+ .+.+..++..||- ..+.+-...+.++|..|
T Consensus 146 ~ia~~Y~~~~~y----~aA~--~r~~~v~~~yp~t------------------------~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 146 YIARFYYKRGKY----KAAI--IRFQYVIENYPDT------------------------PAAEEALARLAEAYYKL 191 (203)
T ss_dssp HHHHHHHCTT-H----HHHH--HHHHHHHHHSTTS------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccH----HHHH--HHHHHHHHHCCCC------------------------chHHHHHHHHHHHHHHh
Confidence 455666554422 2222 2556688999996 34455566778888744
No 182
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.48 E-value=2.9e-05 Score=85.95 Aligned_cols=263 Identities=18% Similarity=0.120 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC---
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS--- 101 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~--- 101 (580)
-++..+..+. +.|+++.||++++..-..-++-..++..+|.+|+.+|++++|...|+..| +.+|++..-..
T Consensus 6 ~lLY~~~il~---e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li---~rNPdn~~Yy~~L~ 79 (517)
T PF12569_consen 6 LLLYKNSILE---EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI---DRNPDNYDYYRGLE 79 (517)
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCcHHHHHHHH
Confidence 3455666665 67999999999999998889999999999999999999999999999844 55554441100
Q ss_pred ---------CCchhhH---h------------HHHHHhhhcCCCCCCCCC---------CCCCCCc----ccccchHHHH
Q 008039 102 ---------SDSSSQQ---L------------SRERVKLLHSGGDSSDDS---------LGRDPSF----KCFSVSDLKK 144 (580)
Q Consensus 102 ---------~~~~~~~---~------------~~~~~~ll~~~~~~~~~~---------~~~~~~~----~~~~~~~~~k 144 (580)
+..+... + ...|..|--...+.|... ..+-+++ +.+=...-+.
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH
Confidence 0000000 0 011111100000000000 0011111 1111111112
Q ss_pred HHHHh--------hhc------------cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 008039 145 KVMAG--------LCR------------NCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDS 204 (580)
Q Consensus 145 ~~~~~--------l~~------------~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~ 204 (580)
.++.. +.. .+.....|.++.|++.|-++|++++|+.++++++...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------------- 224 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------------- 224 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---------------
Confidence 22221 111 1122347999999999999999999999999998652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHH
Q 008039 205 FPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAEC 284 (580)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~ 284 (580)
|.... .++.+ |.++-+.|++.+|.+.+..|-.++ .. .--+
T Consensus 225 -----------------------Pt~~e--ly~~K----------arilKh~G~~~~Aa~~~~~Ar~LD-~~----DRyi 264 (517)
T PF12569_consen 225 -----------------------PTLVE--LYMTK----------ARILKHAGDLKEAAEAMDEARELD-LA----DRYI 264 (517)
T ss_pred -----------------------CCcHH--HHHHH----------HHHHHHCCCHHHHHHHHHHHHhCC-hh----hHHH
Confidence 32222 22223 999999999999999999999982 32 2233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 008039 285 YMHRAFAYRSSGRIAESIADCNKTLALE--PS-------CIQALDTRALLLETIRCLPDCLHDLEHLKLLYNA 348 (580)
Q Consensus 285 ~~nra~a~~~lg~~~eAl~~~~~Al~ld--P~-------~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~ 348 (580)
-..-+..+++.|++++|...+..-..-+ |. +..-...-|.+|...|++..|+.-|..+.+.+..
T Consensus 265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4445777889999999999888766554 21 1344466799999999999999999999888643
No 183
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.48 E-value=5e-06 Score=94.19 Aligned_cols=189 Identities=16% Similarity=0.086 Sum_probs=144.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
..+...|+.+|=+++.++|..+.++..+|.+|...-+..-|-.+|+++. ++++.+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF---eLDatda--------------------- 526 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF---ELDATDA--------------------- 526 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhh---------------------
Confidence 3568899999999999999999999999999999888888999999954 3322211
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.++-.++..|....+++.|....-..-+.+++
T Consensus 527 -----------------------------------------eaaaa~adtyae~~~we~a~~I~l~~~qka~a------- 558 (1238)
T KOG1127|consen 527 -----------------------------------------EAAAASADTYAEESTWEEAFEICLRAAQKAPA------- 558 (1238)
T ss_pred -----------------------------------------hhHHHHHHHhhccccHHHHHHHHHHHhhhchH-------
Confidence 12223467778888888887764333322211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
.....++.. .|-.+.+.+++..||..|+.++.. .
T Consensus 559 -------------------------------~~~k~nW~~----------rG~yyLea~n~h~aV~~fQsALR~-----d 592 (1238)
T KOG1127|consen 559 -------------------------------FACKENWVQ----------RGPYYLEAHNLHGAVCEFQSALRT-----D 592 (1238)
T ss_pred -------------------------------HHHHhhhhh----------ccccccCccchhhHHHHHHHHhcC-----C
Confidence 111111221 288888889999999999999987 3
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|....+|..+|.+|...|+|.-|+..|++|..++|.+.-+.|..+.+...+|+|.+|+..+...+.-
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4477888899999999999999999999999999999988899999999999999999888887654
No 184
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.48 E-value=2.1e-05 Score=91.04 Aligned_cols=46 Identities=9% Similarity=0.084 Sum_probs=33.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDY 86 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~ 86 (580)
..|++++|..+|+.. .+.+...|..+...|...|++++|++.|++.
T Consensus 271 k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 271 KCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 347777777777754 3445677777778888888888888777764
No 185
>PHA03102 Small T antigen; Reviewed
Probab=98.48 E-value=1.9e-07 Score=86.11 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=45.4
Q ss_pred cchhhhhcccCCC--CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 396 VDYYALIGLRRGC--SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 396 ~d~y~iLgv~~~a--~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+|++|||.+++ +..+|++|||++++++||||+++ ++.|+.|++||++|.+
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~------------------------~e~~k~in~Ay~~L~d 58 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD------------------------EEKMKELNTLYKKFRE 58 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch------------------------hHHHHHHHHHHHHHhh
Confidence 3589999999999 99999999999999999999532 3579999999996544
No 186
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=1.4e-05 Score=85.12 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.|+++.|+..++..+...|+|+.++..++.+++..+++.+|++.+++
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~k 365 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKK 365 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555444
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.46 E-value=2.3e-06 Score=86.93 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=84.4
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cHHHHHHHHHH
Q 008039 250 AIAA-LDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS---CIQALDTRALL 325 (580)
Q Consensus 250 G~~~-~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~---~~~A~~~ra~~ 325 (580)
+..+ ++.|+|++|+..|...|... |+ .++.+.+++.+|.+|+..|++++|+..|.+++...|+ .+++++.+|.+
T Consensus 149 A~~l~~~~~~y~~Ai~af~~fl~~y-P~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 149 AIALVQDKSRQDDAIVAFQNFVKKY-PD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHC-cC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 6655 67899999999999999963 43 4455789999999999999999999999999998887 58899999999
Q ss_pred HHhcCChhHHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l~ 346 (580)
+..+|++++|+..|+++++.+
T Consensus 227 ~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999998874
No 188
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.46 E-value=4.7e-05 Score=91.08 Aligned_cols=224 Identities=12% Similarity=0.072 Sum_probs=145.9
Q ss_pred ChhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH
Q 008039 38 EHSEIASALSLLDAALA----LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER 113 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~----l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (580)
..|++++|+++|+.... +.|+. ..|..+-.+|...|++++|.+.|+..... ...| +...++ . -
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p-~~~tyn------s----L 620 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKACANAGQVDRAKEVYQMIHEY-NIKG-TPEVYT------I----A 620 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC-ChHHHH------H----H
Confidence 57899999999999875 56764 66777788899999999999999885421 1111 000000 0 0
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 008039 114 VKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAF 193 (580)
Q Consensus 114 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~ 193 (580)
...+... +--+.-.+++..+....-.+....|..+..+|.+.|++++|..+|+...+..
T Consensus 621 I~ay~k~-----------------G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G---- 679 (1060)
T PLN03218 621 VNSCSQK-----------------GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG---- 679 (1060)
T ss_pred HHHHHhc-----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----
Confidence 0000000 0000111222222222222334456677788888888888888888765431
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 194 RRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 194 r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
..|+.... ..+ ...+.+.|++++|+..|.+.....
T Consensus 680 --------------------------------~~pd~~ty-nsL------------I~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 680 --------------------------------IKLGTVSY-SSL------------MGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred --------------------------------CCCCHHHH-HHH------------HHHHHhCCCHHHHHHHHHHHHHcC
Confidence 11332222 222 678889999999999999887641
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 274 RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 274 ~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
. .| +...|..+..+|.+.|++++|+..+++.... .| +...|..+-.++...|++++|...|..+++.
T Consensus 715 -~--~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 715 -L--RP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -C--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1 22 5677999999999999999999999987654 34 4567777888999999999999999998654
No 189
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.45 E-value=4e-07 Score=85.77 Aligned_cols=66 Identities=23% Similarity=0.442 Sum_probs=53.1
Q ss_pred cchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 396 VDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 396 ~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
.+||.+|||++. ++..+|+++|+++++++|||+..... .+..+...+..|++||++ +++|
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~-----------------~k~~~~~~s~~in~AY~~-L~dp 63 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQ-----------------EKEQNLIIASELNNAYST-LKDA 63 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHH-----------------HHHHHHHHHHHHHHHHHH-hCCH
Confidence 489999999986 67999999999999999999975422 235667789999999995 5667
Q ss_pred hhHHHH
Q 008039 474 MDEEAA 479 (580)
Q Consensus 474 ~~~~~~ 479 (580)
..+..+
T Consensus 64 ~~Ra~Y 69 (166)
T PRK01356 64 LKRAEY 69 (166)
T ss_pred HHHHHH
Confidence 655555
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.45 E-value=7e-07 Score=95.03 Aligned_cols=69 Identities=19% Similarity=0.106 Sum_probs=63.6
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA---LDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A---~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|..+..++|+|.+|+.+|+|++|+..|++||+++|++..+ |+++|.+|..+|++++|+.+|+++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999999865 9999999999999999999999999873
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.45 E-value=4.9e-06 Score=92.35 Aligned_cols=145 Identities=13% Similarity=0.022 Sum_probs=108.4
Q ss_pred cccchhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q 008039 155 EKEGQWRYLVLGQACCHLGL---MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE 231 (580)
Q Consensus 155 ~~~~~~~~~~LG~a~~~lG~---~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~ 231 (580)
.+...|.+++.|..|+..+. ++.|+.+|++++++ ||++.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------------------------------------dP~~a 376 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------------------------------------EPDFT 376 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------------------------------------CCCcH
Confidence 34567888999998887766 88999999999987 47776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 232 SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 232 ~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.+...+..+..... +..-...++...+.....+++.+ +. .+..+.+|.-+|..+...|++++|...+++|+.+
T Consensus 377 ~a~A~la~~~~~~~----~~~~~~~~~l~~a~~~~~~a~al--~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 377 YAQAEKALADIVRH----SQQPLDEKQLAALSTELDNIVAL--PE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred HHHHHHHHHHHHHH----hcCCccHHHHHHHHHHHHHhhhc--cc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 66555422111100 00001123455666667776664 11 2335678888999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 312 EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 312 dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+| +..+|..+|.++...|++++|+..|++|+.+
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99 4789999999999999999999999999888
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=2.8e-06 Score=80.66 Aligned_cols=115 Identities=22% Similarity=0.179 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+-.-|.-+|..|++++|..-|+.++.+.| +-+......
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp-------------------------------------~~~~e~rsI----- 135 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCP-------------------------------------STSTEERSI----- 135 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCc-------------------------------------cccHHHHHH-----
Confidence 44468899999999999999999998732 111221111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
-+-.+|.++++.+.|+.||..++++|++ .|....++..||.+|-++.+|++|+.||.+.+++||..-.+.-.
T Consensus 136 ---ly~Nraaa~iKl~k~e~aI~dcsKaiel-----~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 136 ---LYSNRAAALIKLRKWESAIEDCSKAIEL-----NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred ---HHhhhHHHHHHhhhHHHHHHHHHhhHhc-----CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1223489999999999999999999998 45577889999999999999999999999999999998876554
Q ss_pred HHHHH
Q 008039 322 RALLL 326 (580)
Q Consensus 322 ra~~~ 326 (580)
.+.+-
T Consensus 208 i~rl~ 212 (271)
T KOG4234|consen 208 IARLP 212 (271)
T ss_pred HHhcC
Confidence 44443
No 193
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.45 E-value=4.9e-05 Score=90.92 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=153.9
Q ss_pred ChhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhh-hhhcCCCCCCCCCCchhhHhHHHHH
Q 008039 38 EHSEIASALSLLDAALA--LSPRLELALELKARSLLYLRRFKDVADMLQDYIPS-LKMANDDSGSVSSDSSSQQLSRERV 114 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~--l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (580)
..|++++|+.+|+...+ +.|+ ...|..+..++...|++++|.+.+.+.... ....|+.. +. ..+ +
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-Ty------naL----I 586 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TV------GAL----M 586 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-HH------HHH----H
Confidence 67999999999999966 5676 577888899999999999999999985421 11112100 00 000 0
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Q 008039 115 KLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 115 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r 194 (580)
..+... =.+ +.-.+++..+....-.+....|..+...|++.|++++|+.+|....+..
T Consensus 587 ~ay~k~----------------G~l-deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G----- 644 (1060)
T PLN03218 587 KACANA----------------GQV-DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG----- 644 (1060)
T ss_pred HHHHHC----------------CCH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----
Confidence 000000 000 1112233333222222333456677888888999999998888765320
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~ 274 (580)
..|+......+ ...+.+.|++++|++.|.+.++..
T Consensus 645 -------------------------------v~PD~~TynsL-------------I~a~~k~G~~eeA~~l~~eM~k~G- 679 (1060)
T PLN03218 645 -------------------------------VKPDEVFFSAL-------------VDVAGHAGDLDKAFEILQDARKQG- 679 (1060)
T ss_pred -------------------------------CCCCHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHHHcC-
Confidence 12443222222 567889999999999999998852
Q ss_pred CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA--LEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~--ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
...+...|..+..+|.+.|++++|+..|+.... +.| +...|..+...|.+.|++++|+..|++....
T Consensus 680 ---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 680 ---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred ---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 233678899999999999999999999998865 345 5778999999999999999999999988543
No 194
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=2.5e-05 Score=92.91 Aligned_cols=142 Identities=18% Similarity=0.101 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|.++...|++++|...+++++.+... ..+.......+...
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~----------------------------------~g~~~~~~~~~~~l- 537 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQ----------------------------------HDVYHYALWSLLQQ- 537 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----------------------------------hcchHHHHHHHHHH-
Confidence 4567899999999999999999999876421 00111112222222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA---PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP---- 313 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~---~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP---- 313 (580)
|..++..|++++|...+.+++.+.... ..+....++..+|.++...|++++|...+.+++.+..
T Consensus 538 ---------a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 538 ---------SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 889999999999999999999863221 1122345677889999999999999999999988632
Q ss_pred -CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 314 -SCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 314 -~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
....++..+|.++...|++++|...++++..+.
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 246677789999999999999999999998773
No 195
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=4.2e-06 Score=86.28 Aligned_cols=130 Identities=18% Similarity=0.121 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
...+.-++|..+|+++-|...++...+++ ++..+.++. .
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---------------------------------------eD~~l~qLa-~- 171 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQID---------------------------------------EDSILTQLA-E- 171 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCS---------------------------------------CCHHHHHHH-H-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------------------------CcHHHHHHH-H-
Confidence 44556788999999999999888765431 122222221 1
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 241 KLLLRRRTAAIAALDAG--LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g--~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
+.+.+..| .+.+|.-.|++..+. .+..+.+++.++.|++.+|+|++|...+.+++..+|+++.+
T Consensus 172 ---------awv~l~~g~e~~~~A~y~f~El~~~-----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 172 ---------AWVNLATGGEKYQDAFYIFEELSDK-----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp ---------HHHHHHHTTTCCCHHHHHHHHHHCC-----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred ---------HHHHHHhCchhHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 44444444 699999999997663 33467889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCL-HDLEHLKLL 345 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi-~~~~~al~l 345 (580)
+.+++.+...+|+..++. +.+..+...
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999995544 455555444
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.43 E-value=1.9e-06 Score=89.35 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
+|-+||..|+.+|+|+.||.+-+.=+.++..-- |...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG-----------------------------------DrAa-------- 233 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG-----------------------------------DRAA-------- 233 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhh-----------------------------------hHHH--------
Confidence 466799999999999999999887777753200 0000
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------C
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE------P 313 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld------P 313 (580)
+--..-..||++.-.|+|+.|+++|..++.+.. -.+....+..-|.+|.+|.-+.++..||.+..+=|.+- -
T Consensus 234 -eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 234 -ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred -HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000111229999999999999999999766511 11234456777889999999999999999999888763 2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 314 SCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 314 ~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.-..+++.+|.+|..+|..+.|+...+..+++
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998877
No 197
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.2e-07 Score=91.86 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=50.2
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
-+..|+|.+|||.++++..+|.+|||++|++||||++.... +..+|+.|..||+.+-
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e---------------------~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE---------------------SKKLFVKIATAYEILK 86 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch---------------------hhhhhhhhhccccccc
Confidence 36779999999999999999999999999999999987743 3488999999999543
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.43 E-value=7.2e-07 Score=70.64 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=60.3
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
+++.|+|++|+..|++++.. .|.+..+++.+|.||++.|++++|...+.+++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46889999999999999997 455899999999999999999999999999999999998888777654
No 199
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.42 E-value=4.4e-07 Score=100.91 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=53.2
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.+||++|||.++++..+|+++||++++++|||++.. ..+...|+.|++||++ ++++..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---------------------~eAeekFqeINEAYEV-LSDP~K 59 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---------------------PDAASIFAEINEANDV-LSNPKK 59 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHH-hCCHHH
Confidence 589999999999999999999999999999999754 2456789999999995 566764
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 60 Ra~YD 64 (871)
T TIGR03835 60 RANYD 64 (871)
T ss_pred HHHHh
Confidence 54444
No 200
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.3e-07 Score=88.17 Aligned_cols=67 Identities=22% Similarity=0.380 Sum_probs=56.5
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..+||.+|||.++++..+|+++||++++++|||+++... ..+...|+.|++||+ +++++.
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~-------------------~~a~~~f~~i~~Ay~-vLsd~~ 64 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDP-------------------KVAEEKFKEINEAYE-ILSDPE 64 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-------------------hHHHHHHHHHHHHHH-HhhCHH
Confidence 568999999999999999999999999999999987632 147899999999999 677776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 65 ~r~~yd~ 71 (237)
T COG2214 65 RRAEYDK 71 (237)
T ss_pred HHHHhhh
Confidence 5555444
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.41 E-value=5.6e-07 Score=73.47 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----C---CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----E---PSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----d---P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|..+.+|+++|.+|..+|+|++|+.+|++++.+ . |....++.++|.++..+|++++|+..|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 446788999999999999999999999999966 1 2336789999999999999999999999998874
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.41 E-value=1.5e-06 Score=69.78 Aligned_cols=70 Identities=24% Similarity=0.287 Sum_probs=61.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
...++..++|++|+..+++++.+ .|..+.+++.+|.++..+|++.+|+.+++++++++|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-----DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 45788999999999999999997 45578899999999999999999999999999999999888776654
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.40 E-value=0.00023 Score=66.24 Aligned_cols=127 Identities=28% Similarity=0.309 Sum_probs=101.6
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHH
Q 008039 166 GQ-ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE-SESVSQLLSHIKLL 243 (580)
Q Consensus 166 G~-a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd-~~~~~~ll~~~k~~ 243 (580)
+. ++...|+++.|+..|.+++.+. |. .......+..
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~---- 173 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELD--------------------------------------PELNELAEALLAL---- 173 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--------------------------------------CCccchHHHHHHh----
Confidence 44 8999999999999999985431 11 1111111111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGF-LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~-~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
+..+...+++..|+..+.+++... +. ....+.+++.++...+++..|+..+..++...|.....+..+
T Consensus 174 ------~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 242 (291)
T COG0457 174 ------GALLEALGRYEEALELLEKALKLN-----PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242 (291)
T ss_pred ------hhHHHHhcCHHHHHHHHHHHHhhC-----cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhH
Confidence 445788899999999999999972 23 467899999999999999999999999999999988888999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+...+.++++...+.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 243 ALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99888888899999999999776
No 204
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=5.9e-06 Score=76.13 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=90.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHH
Q 008039 38 EHSEIASALSLLDAALALSPRL---ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERV 114 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~---~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (580)
..++...+...++..+.-.|++ ..+.+.+|.+++..|+|++|++.|+.++.. .++.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~------------------ 81 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDP------------------ 81 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCH------------------
Confidence 5788999988999999999999 577888999999999999999999996621 1100
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Q 008039 115 KLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 115 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r 194 (580)
.+ .....+.|+.++...|++++|+..|+....
T Consensus 82 ------------------~l-----------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~------- 113 (145)
T PF09976_consen 82 ------------------EL-----------------------KPLARLRLARILLQQGQYDEALATLQQIPD------- 113 (145)
T ss_pred ------------------HH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccC-------
Confidence 00 012466789999999999999998865210
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIV 270 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL 270 (580)
.+-......+ .|.+++..|++++|+..|++||
T Consensus 114 --------------------------------~~~~~~~~~~------------~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 --------------------------------EAFKALAAEL------------LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --------------------------------cchHHHHHHH------------HHHHHHHCCCHHHHHHHHHHhC
Confidence 0111112222 3999999999999999999985
No 205
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.40 E-value=8.9e-06 Score=90.29 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=56.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|..+...|++++|+..|++|+.++ + ++..|..+|.++...|++++|++.|.+|+.++|.++.-
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~-----p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLE-----M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 667778899999999999999983 3 47899999999999999999999999999999998863
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.39 E-value=1.4e-05 Score=80.37 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=107.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~~~ 326 (580)
|..++..|+|++|+..|.+++.. .|. .+....+.+++|.+|++++++++|+..+++.|.++|++ ..+++.+|.++
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~-yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR-YPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 99999999999999999999996 354 35566778999999999999999999999999999887 56799999987
Q ss_pred HhcCC------------------hhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 327 ETIRC------------------LPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 327 ~~lg~------------------~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
..+++ ..+|+..|+..++.+ |+... ..++..++..++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---------P~S~y-------------a~~A~~rl~~l~~~l 174 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---------PNSQY-------------TTDATKRLVFLKDRL 174 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---------cCChh-------------HHHHHHHHHHHHHHH
Confidence 66541 246778888887774 44322 123344445555555
Q ss_pred hcCCCCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCC
Q 008039 389 ASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428 (580)
Q Consensus 389 ~~~~~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk 428 (580)
+..+-....||-..|-. ..-|.+ .+..+...|+-
T Consensus 175 a~~e~~ia~~Y~~~~~y----~AA~~r--~~~v~~~Yp~t 208 (243)
T PRK10866 175 AKYELSVAEYYTKRGAY----VAVVNR--VEQMLRDYPDT 208 (243)
T ss_pred HHHHHHHHHHHHHcCch----HHHHHH--HHHHHHHCCCC
Confidence 55444555666665432 223333 34567788885
No 207
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=4.8e-05 Score=90.44 Aligned_cols=206 Identities=14% Similarity=0.018 Sum_probs=143.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHH
Q 008039 38 EHSEIASALSLLDAALALSPRLE-----LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRE 112 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~-----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (580)
..|++..|+..+.+++...|... .++...|.++...|++++|+..+++++...+... .
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g----~------------- 526 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD----V------------- 526 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc----c-------------
Confidence 46899999999999998655432 3566789999999999999999999663211100 0
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008039 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAA 192 (580)
Q Consensus 113 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~ 192 (580)
.....|.+..+|.+++..|++++|...+++++.+....
T Consensus 527 ------------------------------------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 527 ------------------------------------------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 00112456778999999999999999999999874210
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008039 193 FRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE-SESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVD 271 (580)
Q Consensus 193 ~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd-~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~ 271 (580)
. .++ ........ ..|..++..|++++|...+.+++.
T Consensus 565 ~---------------------------------~~~~~~~~~~~~----------~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 565 H---------------------------------LEQLPMHEFLLR----------IRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred c---------------------------------cccccHHHHHHH----------HHHHHHHHhcCHHHHHHHHHHhHH
Confidence 0 000 00111111 128888899999999999999988
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---H--------------------------------
Q 008039 272 GRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---I-------------------------------- 316 (580)
Q Consensus 272 ~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~-------------------------------- 316 (580)
+...........++.++|.++...|++++|...+.+++.+.+.. .
T Consensus 602 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 602 VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 63222122345677789999999999999999988886652211 0
Q ss_pred ----------HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 ----------QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ----------~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+..+|.++...|++++|+..|++++.+
T Consensus 682 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 682 PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 00245677788888888888888888766
No 208
>PRK11906 transcriptional regulator; Provisional
Probab=98.36 E-value=2.8e-05 Score=83.10 Aligned_cols=88 Identities=17% Similarity=0.090 Sum_probs=69.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHh
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL-LET 328 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~-~~~ 328 (580)
|.++.-.++++.|+..|++|+.+ .|..+.+|+.+|..+.-.|+.++|+...+++++++|.-..+-...-.+ .+-
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L-----~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIH-----STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhc-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 77777778888888888888887 345788899999999999999999999999999999887776655555 555
Q ss_pred cCChhHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHL 342 (580)
Q Consensus 329 lg~~~eAi~~~~~a 342 (580)
-.-.++|+..|-+-
T Consensus 420 ~~~~~~~~~~~~~~ 433 (458)
T PRK11906 420 PNPLKNNIKLYYKE 433 (458)
T ss_pred CCchhhhHHHHhhc
Confidence 66677887777544
No 209
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.36 E-value=1.2e-06 Score=83.23 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=54.4
Q ss_pred CccchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
...+||.+|||++. .+..+|+++|++++.++|||+....... .+..+...+..|++||++| .
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~---------------e~~~a~~~s~~iN~AY~tL-~ 67 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDA---------------EKRVAMQWATRANEAYQTL-R 67 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHH---------------HHHHHHHHHHHHHHHHHHh-C
Confidence 34799999999985 5789999999999999999997643322 4456777899999999965 5
Q ss_pred chhhHHHH
Q 008039 472 NIMDEEAA 479 (580)
Q Consensus 472 ~~~~~~~~ 479 (580)
++..+..+
T Consensus 68 ~p~~Ra~Y 75 (176)
T PRK03578 68 DPLKRARY 75 (176)
T ss_pred ChhhHHHH
Confidence 56544444
No 210
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=7.7e-07 Score=93.42 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=58.1
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...|+|.+|||+.++++.+|||.||++|+..||||+.. ..|++-|+.++.||++| ++.
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~---------------------~~A~Eafk~Lq~Afevi-g~~ 290 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI---------------------PRAEEAFKKLQVAFEVI-GDS 290 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC---------------------hhHHHHHHHHHHHHHHh-cch
Confidence 47899999999999999999999999999999999874 68899999999999955 555
Q ss_pred hhHHHHHHHHH
Q 008039 474 MDEEAAEKRRK 484 (580)
Q Consensus 474 ~~~~~~~~~~~ 484 (580)
..+..+....+
T Consensus 291 ~kR~eYd~e~~ 301 (490)
T KOG0720|consen 291 VKRKEYDLELK 301 (490)
T ss_pred hhhhHHHHHHH
Confidence 55555544433
No 211
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.35 E-value=1.2e-06 Score=82.91 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=56.1
Q ss_pred CccchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
+..+||.+||+++. .+..+|+++||+++.++|||+..+.... ++..+...+..|++||++ ++
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~---------------e~~~a~~~s~~IN~AY~~-L~ 65 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPER---------------EQRLALERSASLNEAYQT-LK 65 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHH---------------HHHHHHHHHHHHHHHHHH-hC
Confidence 35689999999987 5689999999999999999997654332 456678889999999995 55
Q ss_pred chhhHHHHH
Q 008039 472 NIMDEEAAE 480 (580)
Q Consensus 472 ~~~~~~~~~ 480 (580)
+|..+..+-
T Consensus 66 ~p~~Ra~Yl 74 (173)
T PRK00294 66 SPPRRARYL 74 (173)
T ss_pred ChhhhHHHH
Confidence 565555443
No 212
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.33 E-value=7.6e-06 Score=92.75 Aligned_cols=194 Identities=14% Similarity=0.072 Sum_probs=154.1
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
-|...|-..|++|.+++|.+..+....+..+.....+++|.++|-.+- +.+
T Consensus 506 ~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~---qka-------------------------- 556 (1238)
T KOG1127|consen 506 DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA---QKA-------------------------- 556 (1238)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh---hhc--------------------------
Confidence 478899999999999999999999999999999999999999855522 110
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESIS 199 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~ 199 (580)
+.+ ...|.|..+|..|...+++-+|+..|+.+++.+
T Consensus 557 ------------~a~----------------------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d---------- 592 (1238)
T KOG1127|consen 557 ------------PAF----------------------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD---------- 592 (1238)
T ss_pred ------------hHH----------------------HHHhhhhhccccccCccchhhHHHHHHHHhcCC----------
Confidence 011 012567779999999999999999999998763
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008039 200 LSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG 279 (580)
Q Consensus 200 ~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~ 279 (580)
|.+-++..-+ |.+|...|+|.-|+..|++|..+ .|
T Consensus 593 ----------------------------PkD~n~W~gL------------GeAY~~sGry~~AlKvF~kAs~L-----rP 627 (1238)
T KOG1127|consen 593 ----------------------------PKDYNLWLGL------------GEAYPESGRYSHALKVFTKASLL-----RP 627 (1238)
T ss_pred ----------------------------chhHHHHHHH------------HHHHHhcCceehHHHhhhhhHhc-----Cc
Confidence 4333443333 99999999999999999999998 34
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhh
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS-------CIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILR 351 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~-------~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~ 351 (580)
...-.-+..+.....+|+|.+|+..+...|..-.. ..+.+.+.+..+...|-+..|+..+++.++...-++.
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 46666778899999999999999999999876544 3566677777777788888899999988877544443
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.4e-05 Score=80.88 Aligned_cols=91 Identities=22% Similarity=0.121 Sum_probs=84.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG---RIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg---~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
|.+++..|++..|...|.+|+++ .|.++.++..+|.+++... ...++...++++|.+||+++.+++.+|..+
T Consensus 163 g~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~a 237 (287)
T COG4235 163 GRAYMALGRASDALLAYRNALRL-----AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAA 237 (287)
T ss_pred HHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999999998 4558899999998888765 367899999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l 345 (580)
++.|+|.+|+..++..+++
T Consensus 238 fe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 238 FEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHcccHHHHHHHHHHHHhc
Confidence 9999999999999999887
No 214
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=9.6e-05 Score=75.73 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=139.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLE-LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~-~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
...||..|+.+++-.+.++-... ..-.-.|-|++.+|.|++|++.|.-+.. .++.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-----~~~~------------------- 89 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-----KDDA------------------- 89 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-----cCCC-------------------
Confidence 46789999999999998876555 3444489999999999999998887431 1111
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
+ ...+.+|+-|+|.+|.+.+|...-.++-+-. .-.| -
T Consensus 90 --------------------------------------~---~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~p-L~~R-L 126 (557)
T KOG3785|consen 90 --------------------------------------P---AELGVNLACCKFYLGQYIEAKSIAEKAPKTP-LCIR-L 126 (557)
T ss_pred --------------------------------------C---cccchhHHHHHHHHHHHHHHHHHHhhCCCCh-HHHH-H
Confidence 0 0135668999999999999988765542110 0000 0
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLL-LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~-~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+..+. .+ ..|.+.+..+...+.+. +.....+...+..-.|++||+.|+++|.-
T Consensus 127 ----------lfhla------------hk-lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--- 180 (557)
T KOG3785|consen 127 ----------LFHLA------------HK-LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--- 180 (557)
T ss_pred ----------HHHHH------------HH-hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 00000 00 01334444444333332 22234467777888999999999999984
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
.+....+-.+++.||.++.-|+-+-+...--|.--|+.+-|...++..+..+=.-.-|....
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 33456677889999999999999999888889999999999888888777654444444333
No 215
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.30 E-value=1.5e-05 Score=71.12 Aligned_cols=94 Identities=21% Similarity=0.115 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS---CIQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~---~~~A~~~ra~ 324 (580)
+.|..+-..|+.++||.+|.+++.. ....+....++.++|.++..+|++++|+..+++++.-.|+ +......++.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA--GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3488999999999999999999995 2224456789999999999999999999999999999888 8888888999
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al 343 (580)
++..+|++++|+..+-.++
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999987764
No 216
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0002 Score=70.65 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=111.4
Q ss_pred ccchhHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008039 156 KEGQWRYL-VLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVS 234 (580)
Q Consensus 156 ~~~~~~~~-~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~ 234 (580)
.+.+|..+ ....+....|+.+.|..++++...- | |.+..+.
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----------------f----------------------p~S~RV~ 89 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----------------F----------------------PGSKRVG 89 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----------------C----------------------CCChhHH
Confidence 34456543 3456678889999999998875432 1 4444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 235 QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 235 ~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
.+. |..+-..|+|++|++.|+..|+- +|.+..++-..-.+...+|+.-+||.....-++.-++
T Consensus 90 ~lk------------am~lEa~~~~~~A~e~y~~lL~d-----dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~ 152 (289)
T KOG3060|consen 90 KLK------------AMLLEATGNYKEAIEYYESLLED-----DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN 152 (289)
T ss_pred HHH------------HHHHHHhhchhhHHHHHHHHhcc-----CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC
Confidence 444 77888899999999999999994 3557888888888899999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+||..++.+|..+|+|+.|.-+|+.++-+
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999766
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.23 E-value=2.9e-05 Score=70.76 Aligned_cols=95 Identities=25% Similarity=0.330 Sum_probs=85.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---QALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---~A~~~ra~~~ 326 (580)
|...++.|+|.+|++.|+....-- |. .+....+.+.++.+|++.|+|++|+..+++-|+++|+++ -+++.+|-++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 999999999999999999988852 32 566788999999999999999999999999999999885 4799999999
Q ss_pred HhcCC---------------hhHHHHHHHHHHHHH
Q 008039 327 ETIRC---------------LPDCLHDLEHLKLLY 346 (580)
Q Consensus 327 ~~lg~---------------~~eAi~~~~~al~l~ 346 (580)
..+.. ...|..+|+++++-+
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 99887 889999999998874
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.22 E-value=4.8e-05 Score=78.14 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
....+|.++..++-++.+++.|+++++++.+ .+|.+. +..-+..+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~---------~~D~~L----------------------Elqvcv~L---- 168 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHN---------NDDAML----------------------ELQVCVSL---- 168 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc---------cCCcee----------------------eeehhhhH----
Confidence 4566899999999999999999999998643 222221 11222222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-----CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-----APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL---- 311 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-----~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l---- 311 (580)
|..+-...||++|+-+..+|.++-.. -+..+...+++.++.++..+|+.-+|.++|+++.++
T Consensus 169 ---------gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 169 ---------GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred ---------HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 77788889999999999999886211 112345678899999999999999999999999876
Q ss_pred --CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 312 --EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 312 --dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.+...+.-+|.+|...|+.+.|..-|+.|...
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3556778888999999999999999999999766
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=3.9e-05 Score=76.80 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=87.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~~~ 326 (580)
+..+++.|+|.+|...|..-|+.- |+ .++.+.++|.+|.+++.+|+|++|...|..++.-.|++ +++++.+|.++
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~Y-P~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKY-PN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 899999999999999999999952 43 67788999999999999999999999999999998877 57799999999
Q ss_pred HhcCChhHHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l~ 346 (580)
..+|+.++|...|+.+++-|
T Consensus 226 ~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 226 GRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999998774
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.19 E-value=4.2e-05 Score=77.70 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=88.8
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh---HHHHHH
Q 008039 161 RYLVLGQAC-CHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES---ESVSQL 236 (580)
Q Consensus 161 ~~~~LG~a~-~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~---~~~~~l 236 (580)
.+|..+..+ +..|++++|+..|++.++.. |++ ..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--------------------------------------P~s~~a~~A~y~ 185 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--------------------------------------PDSTYQPNANYW 185 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------------------------------------cCCcchHHHHHH
Confidence 345566665 56799999999999988763 333 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+ |..++..|+|++|+..|.+++.. .|. .+....+++.+|.++..+|++++|+..|+++++..|+..
T Consensus 186 L------------G~~y~~~g~~~~A~~~f~~vv~~-yP~-s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 186 L------------GQLNYNKGKKDDAAYYFASVVKN-YPK-SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred H------------HHHHHHcCCHHHHHHHHHHHHHH-CCC-CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3 99999999999999999999985 343 567899999999999999999999999999999999987
Q ss_pred HHHHH
Q 008039 317 QALDT 321 (580)
Q Consensus 317 ~A~~~ 321 (580)
.+-..
T Consensus 252 ~a~~A 256 (263)
T PRK10803 252 GAKQA 256 (263)
T ss_pred HHHHH
Confidence 65433
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.7e-05 Score=75.98 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
.+.+.-+.-+...|..+|.++.-|..+|.+|+.+|++.+|...|++++ ++.|+++
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~---------------------- 190 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNP---------------------- 190 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCH----------------------
Confidence 346677777888888888888888888888888888888888888855 4444332
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhhhh
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL---MEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~---~eeAi~~l~~al~l~~~~~r~~ 196 (580)
.++..+|.+++...+ ..++...|++++.+
T Consensus 191 ----------------------------------------~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-------- 222 (287)
T COG4235 191 ----------------------------------------EILLGLAEALYYQAGQQMTAKARALLRQALAL-------- 222 (287)
T ss_pred ----------------------------------------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--------
Confidence 134455776665543 45677778887765
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
||.+-.+..++ |..+|..|+|.+|+..+...++.. |.
T Consensus 223 ------------------------------D~~~iral~lL------------A~~afe~g~~~~A~~~Wq~lL~~l-p~ 259 (287)
T COG4235 223 ------------------------------DPANIRALSLL------------AFAAFEQGDYAEAAAAWQMLLDLL-PA 259 (287)
T ss_pred ------------------------------CCccHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhcC-CC
Confidence 34445555555 778888888888888888888874 33
Q ss_pred CCcccH
Q 008039 277 PQGFLA 282 (580)
Q Consensus 277 ~~~~~a 282 (580)
+.|...
T Consensus 260 ~~~rr~ 265 (287)
T COG4235 260 DDPRRS 265 (287)
T ss_pred CCchHH
Confidence 344333
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=1.3e-05 Score=85.47 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=52.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLA---ECYMHRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a---~~~~nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
|.+++..|+|++|+.+|+++|++ +| .+. .+|+|+|.||..+|++++|+.++.+||++.
T Consensus 82 G~AL~~lGryeEAIa~f~rALeL-~P----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 82 GLSLFSKGRVKDALAQFETALEL-NP----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CC----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998 33 344 569999999999999999999999999983
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=98.18 E-value=3.5e-05 Score=82.39 Aligned_cols=145 Identities=11% Similarity=-0.021 Sum_probs=113.5
Q ss_pred chh--HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008039 158 GQW--RYLVLGQACCHLGL---MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES 232 (580)
Q Consensus 158 ~~~--~~~~LG~a~~~lG~---~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~ 232 (580)
..| -+++.|...+..+. .+.|+.+|.+++... ..||+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----------------------------------~ldp~~a~ 296 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----------------------------------DIQTLKTE 296 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----------------------------------cCCcccHH
Confidence 456 67888988877766 456788888887221 13577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 233 VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 233 ~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
+...+..+.....+. |..- ....-.+|+++-.+|+++ ++.++.++..+|.++...++++.|+..+++|+.++
T Consensus 297 a~~~lA~~h~~~~~~--g~~~-~~~~~~~a~~~A~rAvel-----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 297 CYCLLAECHMSLALH--GKSE-LELAAQKALELLDYVSDI-----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred HHHHHHHHHHHHHHh--cCCC-chHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 776664322211111 1111 345668899999999998 45589999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 313 PSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 313 P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|+++.+|+.+|.++...|+.++|+..++++++|
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999888
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.18 E-value=4.8e-06 Score=66.87 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=55.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 289 AFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 289 a~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+|+..++|++|+..+++++.++|+++.+++.+|.++..+|+|++|+.+|++++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999887
No 225
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=8.2e-05 Score=80.70 Aligned_cols=202 Identities=18% Similarity=0.135 Sum_probs=126.9
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
.|...+.+......+| +.+.|++|+.++..-..+.-.+ ...+.+|-|++.+++.++|+.++.- + +. +
T Consensus 42 ~pdd~~a~~cKvValI---q~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~~-~---~~--~--- 108 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALI---QLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLKG-L---DR--L--- 108 (652)
T ss_pred CCCcHhhHhhhHhhhh---hhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHhc-c---cc--c---
Confidence 3444555555556666 6899999986655533322222 2226899999999999999997662 1 00 0
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
+ .-...+.|++++++|+|++|
T Consensus 109 --------------------------------~---------------------------~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 109 --------------------------------D---------------------------DKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred --------------------------------c---------------------------hHHHHHHHHHHHHHhhHHHH
Confidence 0 01345679999999999999
Q ss_pred HHHHHHHHHHHHHhh---hhhhcccCCCCCCCCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 179 MVLLQTGKRLATAAF---RRESISLSDDSFPFSKFPVSNNHQT--PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAA 253 (580)
Q Consensus 179 i~~l~~al~l~~~~~---r~~~~~~~~d~~~~~~l~~~~~~~~--~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~ 253 (580)
+..|+...+-...+. ++-.+.... ...+. ....+. .| ......+|+. +-.+
T Consensus 130 ldiY~~L~kn~~dd~d~~~r~nl~a~~-----------a~l~~~~~q~v~~--v~-e~syel~yN~----------Ac~~ 185 (652)
T KOG2376|consen 130 LDIYQHLAKNNSDDQDEERRANLLAVA-----------AALQVQLLQSVPE--VP-EDSYELLYNT----------ACIL 185 (652)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHH-----------HhhhHHHHHhccC--CC-cchHHHHHHH----------HHHH
Confidence 999998754321110 000000000 00000 000011 11 1122334444 8899
Q ss_pred HHcCCHHHHHHHHHHHHhccC------CC----CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 254 LDAGLYSEAIRHFSKIVDGRR------GA----PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 254 ~~~g~y~eAi~~y~~AL~~~~------~~----~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
...|+|.+|++.+.+++.++. .. .......+...++.++..+|+..+|...|...|..+|.+.
T Consensus 186 i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 186 IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 999999999999999966521 11 1122457788899999999999999999999999988664
No 226
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.12 E-value=0.00011 Score=75.74 Aligned_cols=213 Identities=16% Similarity=0.112 Sum_probs=130.6
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 29 DARTLIATQEHSEIASALSLLDAALALSPR-LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 29 ~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~-~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
..+..| -.|.|..++..++ ....+|. .......+.++++.+|+++.++..+.. .+ . +...
T Consensus 7 ~vrn~f---y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~-------~~l~ 67 (290)
T PF04733_consen 7 TVRNQF---YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-S-------PELQ 67 (290)
T ss_dssp HHHHHH---CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-S-------CCCH
T ss_pred HHHHHH---HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-C-------hhHH
Confidence 455556 5899999998888 4445553 345677899999999999998874432 00 0 0011
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhh----hccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGL----CRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l----~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
.+ +.-+..+.... + +..++..+ .........+..+..|.+++..|++++|+..+.
T Consensus 68 av-~~la~y~~~~~---------~-----------~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~ 126 (290)
T PF04733_consen 68 AV-RLLAEYLSSPS---------D-----------KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLH 126 (290)
T ss_dssp HH-HHHHHHHCTST---------T-----------HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCT
T ss_pred HH-HHHHHHHhCcc---------c-----------hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 10 00011111100 0 11112111 111111112334567888999999999997654
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAI 263 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi 263 (580)
++ ++-++..+. ..++++.++++.|.
T Consensus 127 ~~-------------------------------------------~~lE~~al~------------Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 127 KG-------------------------------------------GSLELLALA------------VQILLKMNRPDLAE 151 (290)
T ss_dssp TT-------------------------------------------TCHHHHHHH------------HHHHHHTT-HHHHH
T ss_pred cc-------------------------------------------CcccHHHHH------------HHHHHHcCCHHHHH
Confidence 32 112233332 56889999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHH--HcC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 264 RHFSKIVDGRRGAPQGFLAECYMHRAFAYR--SSG--RIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 264 ~~y~~AL~~~~~~~~~~~a~~~~nra~a~~--~lg--~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
..+...-+.+ .. .+..+++.++. ..| .+.+|.-.|+......+..+..+..+|.+++.+|+|++|...+
T Consensus 152 k~l~~~~~~~-----eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 152 KELKNMQQID-----ED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp HHHHHHHCCS-----CC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHhcC-----Cc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999988762 11 34455555444 445 6999999999988877889999999999999999999999999
Q ss_pred HHHH
Q 008039 340 EHLK 343 (580)
Q Consensus 340 ~~al 343 (580)
+.++
T Consensus 225 ~~al 228 (290)
T PF04733_consen 225 EEAL 228 (290)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9884
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=98.12 E-value=7e-05 Score=69.80 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
..+.++.++..|-.++ ..|++++|..+|.-..-++|.++.++..+|.|+-.+++|++|+..|.-+. -+.++|+
T Consensus 33 s~~~le~iY~~Ay~~y---~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~---~l~~~dp- 105 (165)
T PRK15331 33 PQDMMDGLYAHAYEFY---NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF---TLLKNDY- 105 (165)
T ss_pred CHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccCCC-
Confidence 3456777888888888 79999999999999999999999999999999999999999999998854 1222222
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
...+..|+||+.+|+.+.|
T Consensus 106 -------------------------------------------------------------~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 106 -------------------------------------------------------------RPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred -------------------------------------------------------------CccchHHHHHHHhCCHHHH
Confidence 1256689999999999999
Q ss_pred HHHHHHHHH
Q 008039 179 MVLLQTGKR 187 (580)
Q Consensus 179 i~~l~~al~ 187 (580)
+..|+.++.
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998774
No 228
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=7.5e-05 Score=79.87 Aligned_cols=88 Identities=18% Similarity=0.059 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
+..++..++..+|+..+.++|.. .|..+.++..-+..++..++++.|+..+.+++.+.|+..++|+.++.+|..+
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~-----~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKE-----NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 66777889999999999999985 4456899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
|+|++|+..++.+
T Consensus 282 ~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 282 GDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHhcC
Confidence 9999999888765
No 229
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.09 E-value=7.4e-05 Score=81.81 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+-+.|..+..+|+-++|......+++. |+.+.-|.-.+
T Consensus 44 lAmkGL~L~~lg~~~ea~~~vr~glr~--------------------------------------d~~S~vCwHv~---- 81 (700)
T KOG1156|consen 44 LAMKGLTLNCLGKKEEAYELVRLGLRN--------------------------------------DLKSHVCWHVL---- 81 (700)
T ss_pred HHhccchhhcccchHHHHHHHHHHhcc--------------------------------------CcccchhHHHH----
Confidence 345688999999999999988887753 35556666666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|..+-..++|++||.+|+.|+.+ .+.|..+|.-++....++++++.....-.+.++++|.+-.-|+.
T Consensus 82 --------gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 82 --------GLLQRSDKKYDEAIKCYRNALKI-----EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred --------HHHHhhhhhHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 88888999999999999999997 45589999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.++.-+|++..|+..++...+..
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988886663
No 230
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.07 E-value=5.4e-06 Score=86.56 Aligned_cols=63 Identities=19% Similarity=0.416 Sum_probs=54.7
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
.--|.|.+||+..+.++.+|+++||++.+++||||.+...+. .|..-++.++.|.+||+.|++
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~---------------~rse~Ee~y~~ItkAY~~lTd 158 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNE---------------LRSEYEEKYKTITKAYGLLTD 158 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChh---------------HHHHHHHHHHHHHHHHHhhhh
Confidence 356899999999999999999999999999999998764433 567889999999999996555
No 231
>PHA02624 large T antigen; Provisional
Probab=98.05 E-value=5.4e-06 Score=91.46 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=47.2
Q ss_pred ccchhhhhcccCCC--CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRGC--SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~a--~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..++|++|||.+++ +..+|+++||++++++||||+++ .+.|+.|++||++|.+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd------------------------eekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD------------------------EEKMKRLNSLYKKLQEG 65 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc------------------------HHHHHHHHHHHHHHhcH
Confidence 34799999999999 99999999999999999999532 45799999999976553
Q ss_pred h
Q 008039 473 I 473 (580)
Q Consensus 473 ~ 473 (580)
+
T Consensus 66 ~ 66 (647)
T PHA02624 66 V 66 (647)
T ss_pred H
Confidence 3
No 232
>PLN03077 Protein ECB2; Provisional
Probab=98.04 E-value=0.00028 Score=83.70 Aligned_cols=47 Identities=2% Similarity=-0.168 Sum_probs=37.9
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
..|++++|..+|++... .+...|..+...|...|++++|++.|++..
T Consensus 335 k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 335 SLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred hcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46889999999998643 345678888999999999999999988743
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.01 E-value=1e-05 Score=66.01 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=53.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccC--CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRR--GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~--~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.|..++..|+|++|+.+|.+++++.. +...+..+.+++|+|.++..+|++++|+..+++++++
T Consensus 11 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 11 LARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 39999999999999999999998721 2223456899999999999999999999999999986
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.00 E-value=7.3e-05 Score=66.57 Aligned_cols=96 Identities=23% Similarity=0.281 Sum_probs=78.9
Q ss_pred HHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH
Q 008039 34 IATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER 113 (580)
Q Consensus 34 ~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (580)
+...+.|+.+.|++.|.++|.+.|..+.+|.+||.++...|+.++|++++.+++ +++++..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al---eLag~~t---------------- 111 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKAL---ELAGDQT---------------- 111 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHH---HhcCccc----------------
Confidence 334478999999999999999999999999999999999999999999999966 2322111
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008039 114 VKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 114 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~ 190 (580)
+ ..--+|...|.+|..+|+.+.|...|..+.+|.+
T Consensus 112 ------------------r------------------------tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 112 ------------------R------------------------TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred ------------------h------------------------HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 0 0012577789999999999999999999998843
No 235
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.98 E-value=0.00017 Score=64.40 Aligned_cols=101 Identities=21% Similarity=0.185 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+|.+|.++-.+|+.++|+.+|++++.... ++......++..
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-------------------------------------~~~~~~~a~i~l- 44 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGL-------------------------------------SGADRRRALIQL- 44 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------------------------CchHHHHHHHHH-
Confidence 467789999999999999999999986410 111222233333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
|..+...|++++|+..+++++.. -|. .+.+..+...++.++..+|++++|+..+-.++.
T Consensus 45 ---------astlr~LG~~deA~~~L~~~~~~-~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 45 ---------ASTLRNLGRYDEALALLEEALEE-FPD-DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHH-CCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999984 232 344777888899999999999999999998886
No 236
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=1.6e-05 Score=84.91 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc---CChHHHHHHHHHHHhc
Q 008039 235 QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS---GRIAESIADCNKTLAL 311 (580)
Q Consensus 235 ~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l---g~~~eAl~~~~~Al~l 311 (580)
..+.....++..+++||..|-.+.+..||.+|.+++.. .|....+|.||+.++++. |+.-.|+.||..|+++
T Consensus 366 ~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~-----~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl 440 (758)
T KOG1310|consen 366 RFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY-----VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL 440 (758)
T ss_pred chhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh-----ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC
Confidence 35566677888899999999999999999999999996 566899999999999985 5778899999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 312 EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 312 dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
||...+||++++.++..++++.+|+.+...++..
T Consensus 441 n~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 441 NPSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 9999999999999999999999999998877544
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.98 E-value=0.0028 Score=58.83 Aligned_cols=192 Identities=28% Similarity=0.317 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 39 HSEIASALSLLDAALALSPRL--ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~--~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
.+.+..++..+..++...+.. .......+..+...+.+..++..+...+.. ..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------------ 90 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-EL------------------------ 90 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hh------------------------
Confidence 467888999999999999984 788888999999999999999988874421 00
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
.+ .....++.+|..+...+.+..++..+..++...
T Consensus 91 -~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 125 (291)
T COG0457 91 -LP-------------------------------------NLAEALLNLGLLLEALGKYEEALELLEKALALD------- 125 (291)
T ss_pred -cc-------------------------------------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-------
Confidence 00 001246678899999999999999999877542
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhccCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI-AALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~-~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+......... +. .++..|+++.|+..|.+++.. .+
T Consensus 126 -------------------------------~~~~~~~~~~------------~~~~~~~~~~~~~a~~~~~~~~~~-~~ 161 (291)
T COG0457 126 -------------------------------PDPDLAEALL------------ALGALYELGDYEEALELYEKALEL-DP 161 (291)
T ss_pred -------------------------------CCcchHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhc-CC
Confidence 1111111111 33 789999999999999999884 22
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS-CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~-~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
. .......+..++..+...+++..++..+.+++...+. ....+..++.++...++++.|+..+..++..
T Consensus 162 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 162 E-LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred C-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 1 1236677778888899999999999999999999999 7999999999999999999999999999877
No 238
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=7.2e-06 Score=83.95 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=56.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..+||++|||.++++..+|++||++++++||||++... . ..++..|+.|.+||+ +++++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~------------------~~~~~~~~~~~ea~~-~ls~~~ 61 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-K------------------EVAEAKFKEIAEAYE-VLSDPK 61 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-h------------------hhHHHHHhhhhcccc-ccCCHH
Confidence 46899999999999999999999999999999996654 2 355568999999999 788887
Q ss_pred hHHHHHHH
Q 008039 475 DEEAAEKR 482 (580)
Q Consensus 475 ~~~~~~~~ 482 (580)
++..+...
T Consensus 62 kr~~~d~~ 69 (306)
T KOG0714|consen 62 KRKIYDQY 69 (306)
T ss_pred Hhhhcccc
Confidence 66665544
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.96 E-value=0.0031 Score=62.82 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL---ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~---~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
.+.+++.+|...+ ..|+|.+|+..|+++....|.+ ..+....+-+++..++|++|+...+++|. +-|.++
T Consensus 33 p~~~LY~~g~~~L---~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~---lyP~~~- 105 (254)
T COG4105 33 PASELYNEGLTEL---QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR---LYPTHP- 105 (254)
T ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCCCC-
Confidence 6788999998877 7899999999999999987754 57888999999999999999999999773 222211
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC----
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL---- 174 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~---- 174 (580)
.-.|++|+.|.+++..=+
T Consensus 106 ----------------------------------------------------------n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 106 ----------------------------------------------------------NADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred ----------------------------------------------------------ChhHHHHHHHHHHhccCCcccc
Confidence 012577888888765422
Q ss_pred ----HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH--HHH
Q 008039 175 ----MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR--RRT 248 (580)
Q Consensus 175 ----~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~--~k~ 248 (580)
...|+..|++.++--| ++ +--..+...+..++..+. -..
T Consensus 128 Dq~~~~~A~~~f~~~i~ryP------------nS-----------------------~Ya~dA~~~i~~~~d~LA~~Em~ 172 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYP------------NS-----------------------RYAPDAKARIVKLNDALAGHEMA 172 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCC------------CC-----------------------cchhhHHHHHHHHHHHHHHHHHH
Confidence 3355555665553310 00 011222222223333333 234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
-|+-+++.|.|..|+.-++..++- ....+.....+..+..+|..+|-.++|-. ..++|..|+.+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~N~p~ 236 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLGANYPD 236 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHHhcCCC
Confidence 478888999999999999999884 32344566778888889999988887755 55667666443
No 240
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.94 E-value=0.0026 Score=66.47 Aligned_cols=257 Identities=17% Similarity=0.106 Sum_probs=168.5
Q ss_pred cccc-chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 14 HWWL-SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 14 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
+|+. +-+.+...++.+|..-+ ..|||..|..++.++-+..+....++..=|++--++|+++.+=..+.++. +.
T Consensus 74 ~w~~~rKrrra~~~~~egl~~l---~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa---e~ 147 (400)
T COG3071 74 GWFSRRKRRRARKALNEGLLKL---FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA---EL 147 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh---cc
Confidence 7766 23336677777774444 69999999999999999999999999999999999999999988887744 33
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
++++.-+ ....+++++-..+|+.. -...|...+..++.... .....-++|++.
T Consensus 148 ~~~~~l~---------v~ltrarlll~~~d~~a----------------A~~~v~~ll~~~pr~~~--vlrLa~r~y~~~ 200 (400)
T COG3071 148 AGDDTLA---------VELTRARLLLNRRDYPA----------------ARENVDQLLEMTPRHPE--VLRLALRAYIRL 200 (400)
T ss_pred CCCchHH---------HHHHHHHHHHhCCCchh----------------HHHHHHHHHHhCcCChH--HHHHHHHHHHHh
Confidence 3332211 12344444433322111 01123333333333322 233457899999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH--HHHHHHH------
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL--SHIKLLL------ 244 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll--~~~k~~~------ 244 (580)
|++.+....+.+..+-. .-.+++.......- ..+.+..
T Consensus 201 g~~~~ll~~l~~L~ka~----------------------------------~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 201 GAWQALLAILPKLRKAG----------------------------------LLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred ccHHHHHHHHHHHHHcc----------------------------------CCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999998887654320 00112222221111 0000000
Q ss_pred H-----------HH-------HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHH
Q 008039 245 R-----------RR-------TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCN 306 (580)
Q Consensus 245 ~-----------~k-------~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~ 306 (580)
. .+ .-+.-+...|++++|.+...++++-. ....+. +=.-....+++..=+...+
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~L~--~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPRLC--RLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChhHH--HHHhhcCCCCchHHHHHHH
Confidence 0 00 12455677899999999999999841 122221 2233456788888999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 307 KTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 307 ~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+...|+++..+..+|.++.+.+.|.+|-..|+.++..
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999776
No 241
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.89 E-value=2.7e-05 Score=61.52 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=47.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
..|++.+|+..|.+++..+|.+..++..+|.||+..|++++|...+++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999966
No 242
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.82 E-value=3e-05 Score=52.64 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
+.+|+++|.+|..+|++++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999975
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.75 E-value=0.00065 Score=62.03 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.-|...+..|++++|++.|+....--| . .|-.. ...+..
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------------~--------------g~ya~--qAqL~l- 53 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------------F--------------GEYAE--QAQLDL- 53 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------------C--------------CcccH--HHHHHH-
Confidence 467789999999999999999998653210 0 01112 223333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC---------------hHHHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR---------------IAESIADC 305 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~---------------~~eAl~~~ 305 (580)
|.++|+.|+|++|+..|++-|+++ |. +|.-.-+++.+|.+++.+.. ...|+.+|
T Consensus 54 ---------~yayy~~~~y~~A~a~~~rFirLh-P~-hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f 122 (142)
T PF13512_consen 54 ---------AYAYYKQGDYEEAIAAYDRFIRLH-PT-HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDF 122 (142)
T ss_pred ---------HHHHHHccCHHHHHHHHHHHHHhC-CC-CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHH
Confidence 999999999999999999999985 54 56677899999999999987 88999999
Q ss_pred HHHHhcCCCcHHH
Q 008039 306 NKTLALEPSCIQA 318 (580)
Q Consensus 306 ~~Al~ldP~~~~A 318 (580)
...|..-|+..-+
T Consensus 123 ~~lv~~yP~S~ya 135 (142)
T PF13512_consen 123 EQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHCcCChhH
Confidence 9999999988654
No 244
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0035 Score=62.49 Aligned_cols=246 Identities=14% Similarity=0.063 Sum_probs=148.2
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
-..|..+ -.|.|..++....+.-... ........++++|+.+|.|...+...... . +.
T Consensus 13 F~iRn~f---Y~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-----------~~ 70 (299)
T KOG3081|consen 13 FNIRNYF---YLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEG-------K-----------AT 70 (299)
T ss_pred HHHHHHH---HhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccc-------c-----------CC
Confidence 3445545 4799999888777765554 77888899999999999999887532220 0 00
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhh-----hccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGL-----CRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l-----~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
. ...++++..- +.....+|..+..+ ..+......|.. .-|.+|++-|++++|+..+
T Consensus 71 ~--lqAvr~~a~~----------------~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l-~aa~i~~~~~~~deAl~~~ 131 (299)
T KOG3081|consen 71 P--LQAVRLLAEY----------------LELESNKKSILASLYELVADSTDGSNLIDLL-LAAIIYMHDGDFDEALKAL 131 (299)
T ss_pred h--HHHHHHHHHH----------------hhCcchhHHHHHHHHHHHHhhccchhHHHHH-HhhHHhhcCCChHHHHHHH
Confidence 0 0011111100 00000011111111 122233334543 3478899999999999998
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHH----H
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL---RRRTAAIAAL----D 255 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~---~~k~~G~~~~----~ 255 (580)
.....|...+..-.. +..+ -..+.+...++.+.... .+...+.++. .
T Consensus 132 ~~~~~lE~~Al~VqI---------~lk~-----------------~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 132 HLGENLEAAALNVQI---------LLKM-----------------HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hccchHHHHHHHHHH---------HHHH-----------------HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 775544322111000 0000 00011111111111110 1112233333 3
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
.+.+.+|.-.|++.-+- .+..+.+++..+.|++.+|+|++|......+|.-++++++.+.++-.+-..+|.-.++
T Consensus 186 gek~qdAfyifeE~s~k-----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred chhhhhHHHHHHHHhcc-----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 45789999999887763 2336788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 336 LHDLEHLKLL 345 (580)
Q Consensus 336 i~~~~~al~l 345 (580)
...+-.-+..
T Consensus 261 ~~r~l~QLk~ 270 (299)
T KOG3081|consen 261 TERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHh
Confidence 8877655443
No 245
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.0012 Score=70.61 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
...++.++...++..+|+..+.++++.. |.+......
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~--------------------------------------p~d~~LL~~----- 239 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKEN--------------------------------------PQDSELLNL----- 239 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHH-----
Confidence 4568999999999999999999988542 333222222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
.+..+++.++|+.|+...++++.+ .|.....|+.++.||..+|+|+.|+..++.+-
T Consensus 240 -------Qa~fLl~k~~~~lAL~iAk~av~l-----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 240 -------QAEFLLSKKKYELALEIAKKAVEL-----SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -------HHHHHHhcCCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 288999999999999999999997 56688999999999999999999998877543
No 246
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00043 Score=69.64 Aligned_cols=134 Identities=16% Similarity=0.092 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+.+||-||++..++..|..+|++.-.+. |.......++
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~--------------------------------------P~~~qYrlY~---- 84 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLH--------------------------------------PELEQYRLYQ---- 84 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC--------------------------------------hHHHHHHHHH----
Confidence 5678999999999999999999987764 3333333333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------ccC-----------CCCCcccHHHHHHHHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVD----------------GRR-----------GAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~----------------~~~-----------~~~~~~~a~~~~nra~a~~~ 294 (580)
+..+++.+.|.+|+.......+ ..+ ..+....+....|.|-..++
T Consensus 85 --------AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 85 --------AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK 156 (459)
T ss_pred --------HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec
Confidence 5556666666666654433221 100 00112357788899999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 295 SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 295 lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
-|+|++|+.-|+.|++..--++-.-++.|-++...++|+.|+......++-
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999998888888899999999999999999888877654
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.68 E-value=7.7e-05 Score=54.06 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
.+++.+|.+|..+|++++|+..|+++|+.+|+++.++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4688999999999999999999999999999999999998863
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.68 E-value=0.00061 Score=70.22 Aligned_cols=218 Identities=18% Similarity=0.133 Sum_probs=152.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE---LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~---~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+..+.+..+..|+ ...+++.||....+.|..-.+.. ..+-..+.++..+|+|++++..---.| ..+.+
T Consensus 5 q~k~q~~~g~~Ly---~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi---~~a~~--- 75 (518)
T KOG1941|consen 5 QTKKQIEKGLQLY---QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQI---DTARE--- 75 (518)
T ss_pred hhHHHHHHHHhHh---cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHH---HHHHH---
Confidence 3445677787887 67889999999988887554333 234446788899999998886422222 11000
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
+. |..| ...+|.+|+..+-.+-++.++
T Consensus 76 ------------------~~------------ds~~-----------------------~~ea~lnlar~~e~l~~f~kt 102 (518)
T KOG1941|consen 76 ------------------LE------------DSDF-----------------------LLEAYLNLARSNEKLCEFHKT 102 (518)
T ss_pred ------------------HH------------HHHH-----------------------HHHHHHHHHHHHHHHHHhhhH
Confidence 00 0011 123678889999888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
+.+-...+.+. . +-+..+|. ...+.. |+++...+.
T Consensus 103 ~~y~k~~l~lp----------------------g---------t~~~~~~g----q~~l~~----------~~Ahlgls~ 137 (518)
T KOG1941|consen 103 ISYCKTCLGLP----------------------G---------TRAGQLGG----QVSLSM----------GNAHLGLSV 137 (518)
T ss_pred HHHHHHHhcCC----------------------C---------CCcccccc----hhhhhH----------HHHhhhHHH
Confidence 88777666441 0 00011121 122222 999999999
Q ss_pred HHHHHHHHHHHHhccCCC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----------IQALDTRALLLE 327 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----------~~A~~~ra~~~~ 327 (580)
|+.+++.|+.|+.+...+ +....-.++..+|..|..+.++++|+-+..+|.++--++ .-+++.++.++.
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR 217 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Confidence 999999999999973222 123345788999999999999999999999999874332 356789999999
Q ss_pred hcCChhHHHHHHHHHHHHH
Q 008039 328 TIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 328 ~lg~~~eAi~~~~~al~l~ 346 (580)
.+|...+|.+..+.+.+|.
T Consensus 218 ~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 218 LLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HhcccccHHHHHHHHHHHH
Confidence 9999999999999998884
No 249
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.67 E-value=4.4e-05 Score=52.25 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=29.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 305 CNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 305 ~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999986
No 250
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.63 E-value=0.002 Score=61.09 Aligned_cols=95 Identities=19% Similarity=0.121 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALL 325 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~ 325 (580)
..|+.+.+.|+|.||..+|.+++.- + ....+.++..++.+.+.++++..|...++...+.+|.. ++.+...|.+
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG--~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSG--I--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhcc--c--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 3399999999999999999999985 2 44478889999999999999999999999999999865 7788999999
Q ss_pred HHhcCChhHHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l~ 346 (580)
|..+|.+.+|...|+.++..+
T Consensus 170 laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhC
Confidence 999999999999999998883
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.62 E-value=0.0022 Score=58.74 Aligned_cols=103 Identities=21% Similarity=0.113 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-----------------cccHHHHHHHHHHHHHcCChHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ-----------------GFLAECYMHRAFAYRSSGRIAESIADCN 306 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~-----------------~~~a~~~~nra~a~~~lg~~~eAl~~~~ 306 (580)
..+...|......|+...++..+.+++.+-....- .....++..++..+...|++++|+..|.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34444577788899999999999999997321100 1124566777888889999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 307 KTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 307 ~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++.+||.+..+|..+-.+|..+|++.+|+..|+++....
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997774
No 252
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00039 Score=65.64 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=55.2
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
-+.+.|.+|.|.++.+.++|++-||++++..||||+++.. ..|..-|-.|.+||..|.++.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~-------------------~rAqkAFdivkKA~k~l~n~~ 111 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDA-------------------ERAQKAFDIVKKAYKLLENDK 111 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccH-------------------HHHHHHHHHHHHHHHHHhCHH
Confidence 4778999999999999999999999999999999998854 567888999999999777665
Q ss_pred h
Q 008039 474 M 474 (580)
Q Consensus 474 ~ 474 (580)
.
T Consensus 112 ~ 112 (250)
T KOG1150|consen 112 I 112 (250)
T ss_pred H
Confidence 4
No 253
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00015 Score=70.87 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=77.7
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
.++..++ ....|..|+..|.+||-++|..+.++.++|.|++++.+++.+.++|++++ ++.|+
T Consensus 15 E~gnk~f---~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N------------ 76 (284)
T KOG4642|consen 15 EQGNKCF---IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPN------------ 76 (284)
T ss_pred hcccccc---chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChH------------
Confidence 3444455 45679999999999999999999999999999999999999999999966 22211
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
+ +-..+.||.+......+++||..|+++..
T Consensus 77 --------------------------------------~------------vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 77 --------------------------------------L------------VKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred --------------------------------------H------------HHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 0 11467799999999999999999999987
Q ss_pred HH
Q 008039 188 LA 189 (580)
Q Consensus 188 l~ 189 (580)
+.
T Consensus 107 l~ 108 (284)
T KOG4642|consen 107 LL 108 (284)
T ss_pred HH
Confidence 63
No 254
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.002 Score=63.37 Aligned_cols=124 Identities=21% Similarity=0.137 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+...|.-+|.+|++.+|...|+.++-.-....- +--|....+..+-+.+
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~l------------------------------kEkP~e~eW~eLdk~~ 229 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQL------------------------------KEKPGEPEWLELDKMI 229 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHh------------------------------ccCCCChHHHHHHHhh
Confidence 3556799999999999999999998754221100 0113333443333221
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
.-+ +.+-..+++..|+|-+++++.+..|.. .|.+..+|+.||.++...-+..+|.+|+..+|+++|.-..+..
T Consensus 230 tpL--llNy~QC~L~~~e~yevleh~seiL~~-----~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 230 TPL--LLNYCQCLLKKEEYYEVLEHCSEILRH-----HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hHH--HHhHHHHHhhHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 111 123377889999999999999999996 5669999999999999999999999999999999998766644
Q ss_pred H
Q 008039 321 T 321 (580)
Q Consensus 321 ~ 321 (580)
+
T Consensus 303 r 303 (329)
T KOG0545|consen 303 R 303 (329)
T ss_pred H
Confidence 3
No 255
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.59 E-value=0.0017 Score=56.96 Aligned_cols=99 Identities=25% Similarity=0.311 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC--C-----CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCC
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRR--G-----APQGFLAECYMHRAFAYRSSGRIAESIADCNKTL-------ALEP 313 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~--~-----~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al-------~ldP 313 (580)
..|...+..|-|++|...|.+|+++.. | +...+.+.+|..++.++..+|+|++++...+++| +++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 347777889999999999999998731 1 1234568889999999999999999988888887 4454
Q ss_pred C----cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 314 S----CIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 314 ~----~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+ ++.+.+.+|.++..+|+.++|+..|+.+.+..
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4 46778999999999999999999999998873
No 256
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=97.57 E-value=0.00022 Score=67.72 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=55.8
Q ss_pred cchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 396 VDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 396 ~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
.|||.++|++.. .....+++.|+.+..++|||+...... +++.-+...-..|++||.+ +.+|
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~---------------~eq~~a~~~ss~iN~AY~t-LkdP 65 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSA---------------QEQRLAMQKSAEVNDALQI-LKDP 65 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCH---------------HHHHHHHHHHHHHHHHHHH-HCCh
Confidence 489999999876 788999999999999999999766443 2566788899999999996 5667
Q ss_pred hhHHHHH
Q 008039 474 MDEEAAE 480 (580)
Q Consensus 474 ~~~~~~~ 480 (580)
+.+..+-
T Consensus 66 l~RA~YL 72 (173)
T PRK01773 66 ILRAEAI 72 (173)
T ss_pred HHHHHHH
Confidence 6555554
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.55 E-value=0.00021 Score=68.91 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
.++|+.+-..|-+.-|.-.|++++.+ .|..+.+++.+|.-+...|+|+.|.+.|+..+++||.+--++.+||..+
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai-----~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAI-----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhc-----CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34588888888899999999999998 5668999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~ 344 (580)
.--|+|.-|..++.+..+
T Consensus 144 YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred eecCchHhhHHHHHHHHh
Confidence 999999999999988743
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.54 E-value=0.00077 Score=65.16 Aligned_cols=129 Identities=15% Similarity=0.069 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++-.|..|-.+|...-|.-.|.+++.+ .|+...+.+++
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai--------------------------------------~P~m~~vfNyL---- 105 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAI--------------------------------------RPDMPEVFNYL---- 105 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhc--------------------------------------CCCcHHHHHHH----
Confidence 555677777777777777777766654 37778888888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------ 315 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------ 315 (580)
|.-+...|+|+.|.+.|+-.+++ +|..--++.|||.++.--|+|.-|.+++.+--.-||++
T Consensus 106 --------G~Yl~~a~~fdaa~eaFds~~EL-----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 106 --------GIYLTQAGNFDAAYEAFDSVLEL-----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred --------HHHHHhcccchHHHHHhhhHhcc-----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 88999999999999999999998 33456778999999999999999999988877777754
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHhcCC
Q 008039 316 ----------------------------------------------------------------IQALDTRALLLETIRC 331 (580)
Q Consensus 316 ----------------------------------------------------------------~~A~~~ra~~~~~lg~ 331 (580)
.++|+.+|.-+..+|+
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 5677888999999999
Q ss_pred hhHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLL 345 (580)
Q Consensus 332 ~~eAi~~~~~al~l 345 (580)
.++|...|+-++.-
T Consensus 253 ~~~A~~LfKLaian 266 (297)
T COG4785 253 LDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877643
No 259
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.52 E-value=0.00019 Score=48.36 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
+.+++++|.++..+|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999999975
No 260
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.0092 Score=61.61 Aligned_cols=257 Identities=12% Similarity=0.097 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|||++|+..|.-+..-+--++..+.++|-|.+.+|.|.+|-....++- ..+ + ..+|+
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-------k~p-----------L---~~RLl 127 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-------KTP-----------L---CIRLL 127 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-------CCh-----------H---HHHHH
Confidence 35999999999999999888888999999999999999999998766632 111 0 00010
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh---
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR--- 194 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r--- 194 (580)
=.-.+ -..| +|+++. +..+- .+...--+.|+.+.+..-.+.+||..|.+.+.-++.-..
T Consensus 128 fhlah---------------klnd-Ek~~~~-fh~~L-qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNV 189 (557)
T KOG3785|consen 128 FHLAH---------------KLND-EKRILT-FHSSL-QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNV 189 (557)
T ss_pred HHHHH---------------HhCc-HHHHHH-HHHHH-hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHH
Confidence 00000 0000 111111 10000 011112334677788888899999999988754322100
Q ss_pred hhhcccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH--HHHHHHH--HHHHHHHHcC--CHHHHHHHHH
Q 008039 195 RESISLS-DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI--KLLLRRR--TAAIAALDAG--LYSEAIRHFS 267 (580)
Q Consensus 195 ~~~~~~~-~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~--k~~~~~k--~~G~~~~~~g--~y~eAi~~y~ 267 (580)
.-.+|.. .|.+ .-++.....-++.-||+..+..+.... +...... .+-..+...+ .|+.+.....
T Consensus 190 y~ALCyyKlDYy--------dvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 190 YMALCYYKLDYY--------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred HHHHHHHhcchh--------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 0000000 0000 000000000011225555554443211 1110000 0011111111 1333333222
Q ss_pred H----------HHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 268 K----------IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 268 ~----------AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
. ||+.. |.--..-+.+..|+..-|++.++..+|+..|.. ++|..+.-|...|.++..+|+--...+
T Consensus 262 HNLVvFrngEgALqVL-P~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVL-PSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred cCeEEEeCCccHHHhc-hHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 1 22221 111122467889999999999999999998864 899999999999999999999877776
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.+.-|.+.
T Consensus 338 HlKiAqqf 345 (557)
T KOG3785|consen 338 HLKIAQQF 345 (557)
T ss_pred HHHHHHHH
Confidence 66666443
No 261
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.43 E-value=0.0011 Score=62.46 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR----------IAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~----------~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
|+.|.+.|...... .|.++..++|=|.+++.+.+ +++|+.-+++||.++|+..+|++.+|.+|..
T Consensus 7 FE~ark~aea~y~~-----nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAK-----NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 57888888888886 45578999999999887744 5678999999999999999999999999998
Q ss_pred cCC----hhHHHHHHHHHHHHHHHhh
Q 008039 329 IRC----LPDCLHDLEHLKLLYNAIL 350 (580)
Q Consensus 329 lg~----~~eAi~~~~~al~l~~~~l 350 (580)
++. ..+|...|++|.+.+..+.
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 665 2344444444444443333
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.0031 Score=63.30 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
.|..+.-++..|+|.+|...|..-++--|. .+-..++..++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-----------------------------------s~~~~nA~yWL---- 184 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-----------------------------------STYTPNAYYWL---- 184 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------------------------CcccchhHHHH----
Confidence 677888999999999999999987754210 01224455555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|..+|.+|+|.+|...|..++.- -|. .+..++.++.+|.|...+|+.++|-..+.++++--|+...|...
T Consensus 185 --------Ge~~y~qg~y~~Aa~~f~~~~k~-~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 185 --------GESLYAQGDYEDAAYIFARVVKD-YPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred --------HHHHHhcccchHHHHHHHHHHHh-CCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999994 233 56678999999999999999999999999999999999887665
Q ss_pred HHH
Q 008039 322 RAL 324 (580)
Q Consensus 322 ra~ 324 (580)
+..
T Consensus 255 k~~ 257 (262)
T COG1729 255 KVA 257 (262)
T ss_pred HHH
Confidence 543
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.41 E-value=0.00013 Score=49.89 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHH
Q 008039 48 LLDAALALSPRLELALELKARSLLYLRRFKDVAD 81 (580)
Q Consensus 48 ~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~ 81 (580)
+|.+||+++|+++.+|.++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999973
No 264
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.38 E-value=0.00026 Score=75.62 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
+-.++.+++ ..++|..|+.+|.+||+++|+++.++-+|+.+++..+.|..|+.++.++| +.+|..
T Consensus 7 ~k~ean~~l---~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~--------- 71 (476)
T KOG0376|consen 7 LKNEANEAL---KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTY--------- 71 (476)
T ss_pred hhhHHhhhc---ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchh---------
Confidence 345666666 67899999999999999999999999999999999999999999999966 222210
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTG 185 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~a 185 (580)
.-.|+..|.++..+|.+.+|...|+..
T Consensus 72 -----------------------------------------------------~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 72 -----------------------------------------------------IKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred -----------------------------------------------------hheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 124777899999999999999999998
Q ss_pred HHHH
Q 008039 186 KRLA 189 (580)
Q Consensus 186 l~l~ 189 (580)
..+.
T Consensus 99 ~~l~ 102 (476)
T KOG0376|consen 99 KKLA 102 (476)
T ss_pred hhcC
Confidence 7663
No 265
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0074 Score=60.09 Aligned_cols=135 Identities=15% Similarity=0.082 Sum_probs=106.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
.+.+..++..+|+|.-.+..+.+.++-+ +|.......-+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~-------------------------------------~e~~p~L~s~L---- 218 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYY-------------------------------------PEQEPQLLSGL---- 218 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhC-------------------------------------CcccHHHHHHH----
Confidence 4556778888999999999999877542 12222222222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|...++.||.+.|-..|+..-+.... +....+..++.|.+.+|...++|.+|...+++.+..||.++.+..
T Consensus 219 --------gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N 290 (366)
T KOG2796|consen 219 --------GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN 290 (366)
T ss_pred --------HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence 88999999999999988854332100 113346678889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.|-|++-+|+..+|+...+.+++.
T Consensus 291 nKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 291 NKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999776
No 266
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.35 E-value=0.00048 Score=64.44 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 008039 408 CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAAE 480 (580)
Q Consensus 408 a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~~~~~~ 480 (580)
....+|+++|++++.++|||+....... .+..+...+..|++||++| ++|..+..+-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~---------------~~~~a~~~s~~iN~AY~~L-~~p~~Ra~yl 59 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQ---------------EQLAAVQQSTTLNQAYQTL-KDPLMRAEYM 59 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChh---------------hhHHHHHHHHHHHHHHHHh-CChhhhHHHH
Confidence 4567899999999999999996543321 3466888999999999965 5565444443
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.31 E-value=0.02 Score=57.17 Aligned_cols=158 Identities=22% Similarity=0.305 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 231 ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 231 ~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
..+..++.. |...++.|+|.+|+..|....... |. .|....+...++.++++.+++++|+...++=|.
T Consensus 32 ~p~~~LY~~----------g~~~L~~gn~~~A~~~fe~l~~~~-p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 32 LPASELYNE----------GLTELQKGNYEEAIKYFEALDSRH-PF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred CCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHcC-CC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345566666 999999999999999999998753 33 566788999999999999999999999999999
Q ss_pred cCCCcHH---HHHHHHHHHHhc-----CCh---hHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHH
Q 008039 311 LEPSCIQ---ALDTRALLLETI-----RCL---PDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTT 379 (580)
Q Consensus 311 ldP~~~~---A~~~ra~~~~~l-----g~~---~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~ 379 (580)
+.|+++. +++.+|.++... .|. .+|+..|+.++.- .|.. ++.. .+..
T Consensus 100 lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---------yPnS-------~Ya~------dA~~ 157 (254)
T COG4105 100 LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---------YPNS-------RYAP------DAKA 157 (254)
T ss_pred hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---------CCCC-------cchh------hHHH
Confidence 9988754 678888876643 222 4555666666544 2332 2221 2334
Q ss_pred HHHHHHHHhhcCCCCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCC
Q 008039 380 KIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428 (580)
Q Consensus 380 ~~k~lk~~~~~~~~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk 428 (580)
++..++.+++..+.....||.--| +...-+.+ .+..++-+|+-
T Consensus 158 ~i~~~~d~LA~~Em~IaryY~kr~----~~~AA~nR--~~~v~e~y~~t 200 (254)
T COG4105 158 RIVKLNDALAGHEMAIARYYLKRG----AYVAAINR--FEEVLENYPDT 200 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----ChHHHHHH--HHHHHhccccc
Confidence 444444444444445566775443 33333332 34455567775
No 268
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.31 E-value=0.0025 Score=60.25 Aligned_cols=47 Identities=28% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCh---HHHHHHHHhhhh
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRF---KDVADMLQDYIP 88 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~---~eAi~~~~~~l~ 88 (580)
|+.|.+.+......+|.++..+..-|-+|+.|.++ .|+.+|++++|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAis 56 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAIS 56 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 78899999999999999999999999999998776 568888888774
No 269
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.011 Score=58.84 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc-CCCCCCCCCCchhhHhHHHHHhhhcCCC
Q 008039 43 ASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA-NDDSGSVSSDSSSQQLSRERVKLLHSGG 121 (580)
Q Consensus 43 ~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 121 (580)
++-+++..+=+ ....+..+.+++-+|+|.=.+.++.+.|. .+ +.++
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~---~~~e~~p------------------------ 212 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIK---YYPEQEP------------------------ 212 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHH---hCCcccH------------------------
Confidence 66677777755 45677789999999999999999998663 21 1111
Q ss_pred CCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 008039 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLS 201 (580)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~ 201 (580)
+ ....||.+-...|+.+.|-..|++.-+-+..
T Consensus 213 -------------------------------------~-L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---------- 244 (366)
T KOG2796|consen 213 -------------------------------------Q-LLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---------- 244 (366)
T ss_pred -------------------------------------H-HHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----------
Confidence 0 1335799999999999999999865433100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc
Q 008039 202 DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL 281 (580)
Q Consensus 202 ~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~ 281 (580)
++.-.. ...-.+..+..+...++|.+|...|++++.. ++.+
T Consensus 245 ------------------------L~~~q~----------~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-----D~~~ 285 (366)
T KOG2796|consen 245 ------------------------LDGLQG----------KIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-----DPRN 285 (366)
T ss_pred ------------------------hhccch----------hHHHHhhhhhheecccchHHHHHHHhhcccc-----CCCc
Confidence 000001 1222344577888999999999999999996 3447
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---QALDTRALLL 326 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---~A~~~ra~~~ 326 (580)
+.+-+|.|.|++-+|+..+|+...+.++..+|... ...+++-.+|
T Consensus 286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 286 AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 88889999999999999999999999999999753 3344444443
No 270
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.27 E-value=0.014 Score=55.48 Aligned_cols=131 Identities=16% Similarity=0.092 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
-.+.||.++..+|++.+|..+|++++.= |--.+...++..
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG---------------------------------------~fA~d~a~lLgl- 130 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG---------------------------------------IFAHDAAMLLGL- 130 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc---------------------------------------ccCCCHHHHHHH-
Confidence 3567899999999999999999998731 111222334444
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
+++.|..+++.+|...+++..+.. |... .+.-..-.|.++..+|++.+|...|+.++...|+ +.+..
T Consensus 131 ---------A~Aqfa~~~~A~a~~tLe~l~e~~-pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~ 197 (251)
T COG4700 131 ---------AQAQFAIQEFAAAQQTLEDLMEYN-PAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARI 197 (251)
T ss_pred ---------HHHHHhhccHHHHHHHHHHHhhcC-CccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHH
Confidence 899999999999999999999974 4222 2333445588999999999999999999999875 67788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
..+..+.++|+.++|..-|..+.+
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHH
Confidence 889999999999999888776644
No 271
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00036 Score=71.84 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--C--------C----CCcccHHHHHHHHHHHHHcCChHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR--G--------A----PQGFLAECYMHRAFAYRSSGRIAESIAD 304 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~--~--------~----~~~~~a~~~~nra~a~~~lg~~~eAl~~ 304 (580)
.+......++.|+..|+.++|..|+..|.+++.... + + -......++.|.+.|-++++.+..|+..
T Consensus 218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~ 297 (372)
T KOG0546|consen 218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFR 297 (372)
T ss_pred hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceec
Confidence 344556677889999999999999999999987632 0 1 1233457788999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 305 CNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 305 ~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+++.++...++|++++..+..+.++++|+.+++.+...
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999655
No 272
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.25 E-value=0.069 Score=61.18 Aligned_cols=48 Identities=29% Similarity=0.305 Sum_probs=45.1
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
+.+++..|+...++.+...|+...+..++|-+++.+|+++||..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~ 68 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEA 68 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh
Confidence 678999999999999999999999999999999999999999976654
No 273
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.13 E-value=0.036 Score=65.98 Aligned_cols=226 Identities=12% Similarity=0.020 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
++..+-.+.|++.+.-+|+++..|..-=.-++.+++.++|.+..+++++.+...- ..+++-.|-+ +|.-
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE----------eeEKLNiWiA-~lNl 1506 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE----------EEEKLNIWIA-YLNL 1506 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch----------hHHHHHHHHH-HHhH
Confidence 4344556789999999999999999888888999999999999999987652211 1122211111 1111
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESIS 199 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~ 199 (580)
.+ .+...+.=++++...|+.++.-. .|..|..+|-..+.+++|.++|+..++-- +
T Consensus 1507 En--------------~yG~eesl~kVFeRAcqycd~~~--V~~~L~~iy~k~ek~~~A~ell~~m~KKF----~----- 1561 (1710)
T KOG1070|consen 1507 EN--------------AYGTEESLKKVFERACQYCDAYT--VHLKLLGIYEKSEKNDEADELLRLMLKKF----G----- 1561 (1710)
T ss_pred HH--------------hhCcHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHhhcchhHHHHHHHHHHHh----c-----
Confidence 00 01233445688888888887643 35667889999999999999999876531 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008039 200 LSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG 279 (580)
Q Consensus 200 ~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~ 279 (580)
....++..+ |..++++.+-+.|-..+.+||... |. .
T Consensus 1562 -----------------------------q~~~vW~~y------------~~fLl~~ne~~aa~~lL~rAL~~l-Pk--~ 1597 (1710)
T KOG1070|consen 1562 -----------------------------QTRKVWIMY------------ADFLLRQNEAEAARELLKRALKSL-PK--Q 1597 (1710)
T ss_pred -----------------------------chhhHHHHH------------HHHHhcccHHHHHHHHHHHHHhhc-ch--h
Confidence 012222223 888999999999999999999963 32 3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
....+...-|..-++.|+.+.+...|+..+.-+|.-.+.|.-....-.+.|+.+-....|++++.+
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 367788888999999999999999999999999999999999999999999999999999999887
No 274
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00071 Score=66.71 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=49.1
Q ss_pred ccchhhhhccc---CCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLR---RGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~---~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..|+|.+||+. ..+....|.+++++..++||||+.....+ ......|++|++||++| +
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~------------------~~~d~fFk~iqkA~evL-~ 102 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGN------------------KGCDEFFKLIQKAREVL-G 102 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCC------------------CCcHHHHHHHHHHHHHh-c
Confidence 47999999974 57788999999999999999999644333 25678899999999965 4
Q ss_pred chh
Q 008039 472 NIM 474 (580)
Q Consensus 472 ~~~ 474 (580)
|..
T Consensus 103 D~~ 105 (379)
T COG5269 103 DRK 105 (379)
T ss_pred cHH
Confidence 443
No 275
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0025 Score=61.51 Aligned_cols=58 Identities=14% Similarity=0.303 Sum_probs=47.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...||.+|||..+|+..+++.+|..++.++|||..+... ....|..|.+||.-+++..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a---------------------daa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA---------------------DAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc---------------------cHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999865522 2356888899998555544
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.96 E-value=0.0068 Score=65.33 Aligned_cols=211 Identities=12% Similarity=0.067 Sum_probs=125.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
..+...-+.+-.+||+++|+++.+|.++|.=- -.-..||.++|++++..-+..-... ....
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s-----------------~~~~ 241 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKS-----------------QFLQ 241 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchh-----------------hhhh
Confidence 45778888999999999999999998887632 2335788888888774322210000 0000
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.. ... ...+...........-..||.|..++|+.++|++.++..++..+.
T Consensus 242 ~~----------g~~-------------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~------- 291 (539)
T PF04184_consen 242 HH----------GHF-------------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN------- 291 (539)
T ss_pred cc----------cch-------------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-------
Confidence 00 000 000001111222334566899999999999999999998865210
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
-+...+...+ -..+...+.|.++-..+.+-=++ .-
T Consensus 292 -----------------------------~~~l~IrenL------------ie~LLelq~Yad~q~lL~kYdDi----~l 326 (539)
T PF04184_consen 292 -----------------------------LDNLNIRENL------------IEALLELQAYADVQALLAKYDDI----SL 326 (539)
T ss_pred -----------------------------cchhhHHHHH------------HHHHHhcCCHHHHHHHHHHhccc----cC
Confidence 1233344333 66778888888887766653221 12
Q ss_pred cccHHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhcCCCcHHHHHHHH------HHHHhcCChhHHH
Q 008039 279 GFLAECYMHRAFAYRS-SGR---------------IAESIADCNKTLALEPSCIQALDTRA------LLLETIRCLPDCL 336 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~-lg~---------------~~eAl~~~~~Al~ldP~~~~A~~~ra------~~~~~lg~~~eAi 336 (580)
|..+.+.|..+....+ .++ -..|++...+|++.||.-++-+..+= .-+.+.|+ .||+
T Consensus 327 pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAi 405 (539)
T PF04184_consen 327 PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAI 405 (539)
T ss_pred CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHH
Confidence 3456666666554433 111 13477889999999998877554432 23445565 7777
Q ss_pred HHHHHHHH
Q 008039 337 HDLEHLKL 344 (580)
Q Consensus 337 ~~~~~al~ 344 (580)
.+---.+.
T Consensus 406 aYAf~hL~ 413 (539)
T PF04184_consen 406 AYAFFHLQ 413 (539)
T ss_pred HHHHHHHH
Confidence 66554433
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.016 Score=55.52 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-HHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-QALDTR 322 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-~A~~~r 322 (580)
....+.+..++..|++++|+..+..++.. +.+..+.+.+-.++|.+.+.+|++++|+..++..- ++++. ...-.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elr 165 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHh
Confidence 33445688999999999999999999975 43345567788899999999999999999877643 23332 235678
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.++...|+-++|...|+++++.
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHc
Confidence 99999999999999999999766
No 278
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.90 E-value=0.00071 Score=69.48 Aligned_cols=106 Identities=24% Similarity=0.281 Sum_probs=82.8
Q ss_pred chhhhHHHHHHHHHH----HHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc
Q 008039 18 SNRKIVDKYIRDART----LIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA 93 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~----~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~ 93 (580)
.+.++.++-+..+.. .++....|++..|+++|..||.++|.++..|..||.+++.+++...||.+|..++ .++
T Consensus 102 s~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein 178 (377)
T KOG1308|consen 102 SNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EIN 178 (377)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh---ccC
Confidence 455666666655543 2222256999999999999999999999999999999999999999999999955 444
Q ss_pred CCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC
Q 008039 94 NDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG 173 (580)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG 173 (580)
|+.+. -|-..|.+...+|
T Consensus 179 ~Dsa~--------------------------------------------------------------~ykfrg~A~rllg 196 (377)
T KOG1308|consen 179 PDSAK--------------------------------------------------------------GYKFRGYAERLLG 196 (377)
T ss_pred ccccc--------------------------------------------------------------ccchhhHHHHHhh
Confidence 33221 1223488899999
Q ss_pred CHHHHHHHHHHHHHH
Q 008039 174 LMEDAMVLLQTGKRL 188 (580)
Q Consensus 174 ~~eeAi~~l~~al~l 188 (580)
++++|...|..++++
T Consensus 197 ~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 197 NWEEAAHDLALACKL 211 (377)
T ss_pred chHHHHHHHHHHHhc
Confidence 999999999999877
No 279
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.86 E-value=0.35 Score=53.85 Aligned_cols=274 Identities=14% Similarity=0.163 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCC
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 120 (580)
=.+-++..|.+=|.++|.+.. .--..|...++.++|.+-|.++++.-+. .+.. ..|.-+++.+-..|++..
T Consensus 153 lPets~rvyrRYLk~~P~~~e---eyie~L~~~d~~~eaa~~la~vln~d~f----~sk~--gkSn~qlw~elcdlis~~ 223 (835)
T KOG2047|consen 153 LPETSIRVYRRYLKVAPEARE---EYIEYLAKSDRLDEAAQRLATVLNQDEF----VSKK--GKSNHQLWLELCDLISQN 223 (835)
T ss_pred ChHHHHHHHHHHHhcCHHHHH---HHHHHHHhccchHHHHHHHHHhcCchhh----hhhc--ccchhhHHHHHHHHHHhC
Confidence 356788889999999988743 3356788899999999999887732111 1110 113456778888888765
Q ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hhhh--h
Q 008039 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATA--AFRR--E 196 (580)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~--~~r~--~ 196 (580)
.+- .++ ....+-+=.|+.+-.|..+ ..|..|+.-|.+.|.+|.|-..|+++++--.. +|.. .
T Consensus 224 p~~------------~~s-lnvdaiiR~gi~rftDq~g-~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd 289 (835)
T KOG2047|consen 224 PDK------------VQS-LNVDAIIRGGIRRFTDQLG-FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFD 289 (835)
T ss_pred cch------------hcc-cCHHHHHHhhcccCcHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHH
Confidence 321 111 1122334445555444433 23677999999999999999999998754210 0000 0
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHH------------------HHHHHHcC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMT-ESESVSQLLSHIKLLLRRRTA------------------AIAALDAG 257 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP-d~~~~~~ll~~~k~~~~~k~~------------------G~~~~~~g 257 (580)
.+.......+...++... +. . .++ +...+.-.+.....+...+.. -.+-+..|
T Consensus 290 ~Ya~FEE~~~~~~me~a~--~~--~----~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~ 361 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELAD--EE--S----GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG 361 (835)
T ss_pred HHHHHHHHHHHHHHhhhh--hc--c----cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC
Confidence 000000000001111000 00 0 001 222222222222222221100 01223468
Q ss_pred CHHHHHHHHHHHHhccCCCC-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhcCCh
Q 008039 258 LYSEAIRHFSKIVDGRRGAP-QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALDTRALLLETIRCL 332 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~-~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~~ra~~~~~lg~~ 332 (580)
+..+-+..|++|+..-+|.. ......+|...|..|-..|+.+.|...+++|+..+=.. ...|..-|..=+...++
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~ 441 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENF 441 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhH
Confidence 89999999999998755532 23356799999999999999999999999999886433 56778888888888999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
+.|+...++|.-+
T Consensus 442 ~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 442 EAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHhhhcC
Confidence 9999999888544
No 280
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.015 Score=59.68 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
|--=|.-||+-.+|..|+.+|.+++.-.+. ||+-..+. +.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~-----------------------------------D~dlnavL-Y~NR-- 125 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCA-----------------------------------DPDLNAVL-YTNR-- 125 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCC-----------------------------------CccHHHHH-HhhH--
Confidence 444599999999999999999999976321 34333322 2233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
+.+.+-.|+|..||.-+++++.+ .|.+..+|+.-|.|++.+.++++|+.+|+..+.++-..-.+
T Consensus 126 --------AAa~~~l~NyRs~l~Dcs~al~~-----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 126 --------AAAQLYLGNYRSALNDCSAALKL-----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhc-----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 77778889999999999999998 56689999999999999999999999999998887554443
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.81 E-value=0.0019 Score=43.52 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
.+|+.+|.+|..+|++++|+.++.++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467788888888888888888888888887753
No 282
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.69 E-value=0.011 Score=62.18 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=79.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCC------CCCc-------ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRG------APQG-------FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~------~~~~-------~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
.|...|++++|..|+-.|..+|+++.. ...+ ..+.+--.+..||+++++.+-|+....+.|.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 477888888888888888888887421 0011 123344578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..-|++.|.|+..+.+|.+|...+--+.-+|
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776654
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.053 Score=53.32 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=98.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc-CCCCCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcC------CCcHHHHHHHH
Q 008039 252 AALDAGLYSEAIRHFSKIVDGR-RGAPQGFLAECYMHRAFAYRS-SGRIAESIADCNKTLALE------PSCIQALDTRA 323 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~-~~~~~~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ld------P~~~~A~~~ra 323 (580)
..|+.++..+|++++.++|++- +-.....-+.-+..+|..|-. +.+++.||.+|+.|-+-- ..--++++..|
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 3456667777777777777751 000011123334445555544 367788888888776542 22246677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhc
Q 008039 324 LLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIG 403 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLg 403 (580)
..-..+++|..|+..|+++.... + + | . .+| -+.++|+-.-|
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s---~------~------n-----------~------LLK-------ys~KdyflkAg 202 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSS---L------D------N-----------N------LLK-------YSAKDYFLKAG 202 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---c------c------c-----------h------HHH-------hHHHHHHHHHH
Confidence 77788888888888888875441 1 0 0 0 011 12445666556
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 008039 404 LRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAA 479 (580)
Q Consensus 404 v~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~~~~~ 479 (580)
+-.-+..+.|. -+.+|+..-+-.|.|... ...+.|..+.+-.-..-...|.+..+-|..++ .+|.|..
T Consensus 203 LChl~~~D~v~---a~~ALeky~~~dP~F~ds---REckflk~L~~aieE~d~e~fte~vkefDsis--rLD~W~t 270 (288)
T KOG1586|consen 203 LCHLCKADEVN---AQRALEKYQELDPAFTDS---RECKFLKDLLDAIEEQDIEKFTEVVKEFDSIS--RLDQWKT 270 (288)
T ss_pred HHhHhcccHHH---HHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhhhHHHHHHHHHhhhccc--hHHHHHH
Confidence 55444333333 233555555555554432 12334444444444555677888888887432 3554443
No 284
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.62 E-value=0.0072 Score=45.72 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
++++.+|.++.++|+|..|..+++.+|+++|+|..|......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999999986655444
No 285
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.58 E-value=0.19 Score=57.15 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=84.3
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 008039 156 KEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQ 235 (580)
Q Consensus 156 ~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ 235 (580)
.+..|.|+ |+.+-..|+++.|+.+|..+...-+. -...|. .|.. ..+..
T Consensus 911 d~~L~~WW--gqYlES~GemdaAl~~Y~~A~D~fs~---VrI~C~---------qGk~-----------------~kAa~ 959 (1416)
T KOG3617|consen 911 DESLYSWW--GQYLESVGEMDAALSFYSSAKDYFSM---VRIKCI---------QGKT-----------------DKAAR 959 (1416)
T ss_pred chHHHHHH--HHHHhcccchHHHHHHHHHhhhhhhh---eeeEee---------ccCc-----------------hHHHH
Confidence 35678886 88889999999999999987643110 000010 0100 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------ccCCCC---------------CcccHHHH-------HH
Q 008039 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVD------GRRGAP---------------QGFLAECY-------MH 287 (580)
Q Consensus 236 ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~------~~~~~~---------------~~~~a~~~-------~n 287 (580)
+.+.-.....-...|..|-..|++.+|+..|++|-. ++..+. +-..+..| +.
T Consensus 960 iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~ 1039 (1416)
T KOG3617|consen 960 IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH 1039 (1416)
T ss_pred HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh
Confidence 111111111111227778889999999999987643 321100 00001111 11
Q ss_pred H-HHHHHHcCChHHHHHHHHH-----HH-----hcCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 288 R-AFAYRSSGRIAESIADCNK-----TL-----ALEPS-CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 288 r-a~a~~~lg~~~eAl~~~~~-----Al-----~ldP~-~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+ -..|.+.|.+..|++..-+ +| .+||+ +++.+.+-+.-+....+|+.|+..+-.+.++
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 1 1334455555555543221 11 23554 5677777788999999999998776555443
No 286
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.54 E-value=1 Score=50.41 Aligned_cols=258 Identities=13% Similarity=0.081 Sum_probs=140.9
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh-cCCCc-----HHHHHHHHHHHHHccChHHHHHHHHhhhhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALA-LSPRL-----ELALELKARSLLYLRRFKDVADMLQDYIPS 89 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~-l~P~~-----~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~ 89 (580)
+++|+..|.+|++....+ .|+..+-+..|..|+. ++|.- ...|...|..|...|..++|..+++++++.
T Consensus 342 LRQn~~nV~eW~kRV~l~-----e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY-----EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HhcCCccHHHHHhhhhhh-----cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 447888888888776443 6788888888888765 66643 367788999999999999999999996522
Q ss_pred hhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHH
Q 008039 90 LKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC 169 (580)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~ 169 (580)
| ++ .++|| .-.|...|..-
T Consensus 417 ----~---------------------------------------y~--~v~dL----------------a~vw~~waemE 435 (835)
T KOG2047|consen 417 ----P---------------------------------------YK--TVEDL----------------AEVWCAWAEME 435 (835)
T ss_pred ----C---------------------------------------cc--chHHH----------------HHHHHHHHHHH
Confidence 0 00 11111 12466668888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH---
Q 008039 170 CHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSK-FPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR--- 245 (580)
Q Consensus 170 ~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~-l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~--- 245 (580)
....+++.|+.+++++..+.+. ..+...+++..... +..+-..+.....-..+---.+.+...+.++-++.-
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~----~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTN----PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCc----hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 8888999999999988765211 00000111100000 000000000000000000000111111111111100
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHH-HHH
Q 008039 246 --RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-SCIQA-LDT 321 (580)
Q Consensus 246 --~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-~~~~A-~~~ 321 (580)
...-|+-+-...-|+++.+.|.+.|.+-.+.+.-.....|.-.....+.--+.+.|...|++||..-| .+.+. |+.
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLL 591 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 01225555566678888888888888742221111223334444444445567888888888888765 34444 334
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al 343 (580)
.|..=...|.-..|+..|++|.
T Consensus 592 YA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4555566777777788887773
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.48 E-value=0.0056 Score=41.24 Aligned_cols=30 Identities=10% Similarity=-0.061 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+++|.++..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 478999999999999999999999999998
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.45 E-value=0.38 Score=50.25 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=92.3
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 008039 156 KEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQ 235 (580)
Q Consensus 156 ~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ 235 (580)
.+..+.|+.++.++...|.++-|...+.++..+... .......+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----------------------------------~~~~~~~v~- 187 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----------------------------------SESLLPRVF- 187 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----------------------------------ccCCCcchH-
Confidence 345567888999999999999999999887654210 000001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccCC----------------------------CCCcccHHHHH
Q 008039 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVD-GRRG----------------------------APQGFLAECYM 286 (580)
Q Consensus 236 ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~-~~~~----------------------------~~~~~~a~~~~ 286 (580)
+ +.+..+...|+..+|+..+...+. .... ......+.++.
T Consensus 188 -~----------e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 256 (352)
T PF02259_consen 188 -L----------EYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFL 256 (352)
T ss_pred -H----------HHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHH
Confidence 1 227788889999999999888877 1100 01123456677
Q ss_pred HHHHHHHHc------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 287 HRAFAYRSS------GRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 287 nra~a~~~l------g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.+|.-...+ +.+++++..|..++.++|++.++|+..|..+..+=+
T Consensus 257 ~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 257 LLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 777776677 888999999999999999999999999988776533
No 289
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.40 E-value=1.7 Score=46.09 Aligned_cols=192 Identities=19% Similarity=0.108 Sum_probs=131.7
Q ss_pred ChhhHHHHHHHHHHHH-hcCCCc-HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHh
Q 008039 38 EHSEIASALSLLDAAL-ALSPRL-ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al-~l~P~~-~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
..||-..|-..-.++- .++.+. +.++.+-|.+-+.-|+|++|-.-|+-.+ +|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-------~dP------------------ 150 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-------DDP------------------ 150 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-------cCh------------------
Confidence 4688888888887776 344333 4556778888999999999999888744 111
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~ 195 (580)
.. + +.|| + .|-..-.++|..+.|+.+-+++...++.
T Consensus 151 -----------------Et----------R-llGL----------R--gLyleAqr~GareaAr~yAe~Aa~~Ap~---- 186 (531)
T COG3898 151 -----------------ET----------R-LLGL----------R--GLYLEAQRLGAREAARHYAERAAEKAPQ---- 186 (531)
T ss_pred -----------------HH----------H-HHhH----------H--HHHHHHHhcccHHHHHHHHHHHHhhccC----
Confidence 00 0 1111 1 1122346789999999998888766421
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR-- 273 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~-- 273 (580)
-.-+.... -......|+|+.|++..+......
T Consensus 187 ----------------------------------l~WA~~At------------Le~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 187 ----------------------------------LPWAARAT------------LEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred ----------------------------------CchHHHHH------------HHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 11111111 234567899999999998765531
Q ss_pred CCC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 274 RGA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 274 ~~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++. -....+.++.-.+...... +...|..+...++++.|+++.+-..-+.+|+..|+.-.+-..++.+-+.
T Consensus 221 e~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 111 1123456666666665554 4788999999999999999999999999999999999999999888544
No 290
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0045 Score=71.02 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHhhcCC--CCccchhhhhcccCCC----CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHH
Q 008039 383 ELKQRVASGE--TGNVDYYALIGLRRGC----SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSAL 456 (580)
Q Consensus 383 ~lk~~~~~~~--~~~~d~y~iLgv~~~a----~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~ 456 (580)
.++.++.++. ....+-|++|.++.+. ..+.|+++|+++|.++||||++. ..
T Consensus 1266 ~W~~ElekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----------------------GR 1322 (2235)
T KOG1789|consen 1266 TWYNELEKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----------------------GR 1322 (2235)
T ss_pred HHHHHHhcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----------------------HH
Confidence 3444444433 2455789999987543 34789999999999999999854 45
Q ss_pred HHHHHHHHHHHHhcC
Q 008039 457 LLYRLLQRGYSSVMS 471 (580)
Q Consensus 457 ~~f~~i~~Ay~~l~~ 471 (580)
++|..+++|||.|.+
T Consensus 1323 emFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1323 EMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHHHHHHHHHH
Confidence 779999999997653
No 291
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.19 Score=49.93 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=93.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
.|...-.+..+.++..+|+++..+--. . | -|+ .+...+.+
T Consensus 77 aamLake~~klsEvvdl~eKAs~lY~E----------------~--G---------------spd--tAAmaleK----- 116 (308)
T KOG1585|consen 77 AAMLAKELSKLSEVVDLYEKASELYVE----------------C--G---------------SPD--TAAMALEK----- 116 (308)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH----------------h--C---------------Ccc--hHHHHHHH-----
Confidence 355566777888999999988876311 0 0 022 22223333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH----hc--CCCcHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTL----AL--EPSCIQ 317 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al----~l--dP~~~~ 317 (580)
+-...+.-+.++|+..|++++.+-+. .....-..++...+.++.++.+|.+|-..+.+-. .. -|+.-+
T Consensus 117 -----Aak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 117 -----AAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred -----HHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 66677889999999999999887321 1123356778888999999999999877665543 22 355566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++...-.+|+...+|..|..+|+...++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 7777777777888999999998887444
No 292
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.048 Score=58.61 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
.....+-++ .....+.+.....-++-+.-+++.++.+++......|.|..|+..+-..- +...+ .+..
T Consensus 209 ~~ykVr~ll---q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn--i~~~~--g~~~----- 276 (696)
T KOG2471|consen 209 QLYKVRFLL---QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN--IHKEA--GGTI----- 276 (696)
T ss_pred hHhhHHHHH---HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc--ccccc--Cccc-----
Confidence 344555566 34556677777778888888999999999999999999999998554310 00000 0000
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCC-cccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPS-FKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
++. ..| -.|.+||-+++.+|.+.-++.+|.+
T Consensus 277 -------------------------T~q~~~c-----------------------if~NNlGcIh~~~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 277 -------------------------TPQLSSC-----------------------IFNNNLGCIHYQLGCYQASSVLFLK 308 (696)
T ss_pred -------------------------cchhhhh-----------------------eeecCcceEeeehhhHHHHHHHHHH
Confidence 000 001 1367899999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
+++-.....++. + -....+ .......+..+|+. |..+...|+.-.|.+
T Consensus 309 AL~N~c~qL~~g-~-~~~~~~--------------------tls~nks~eilYNc----------G~~~Lh~grPl~Afq 356 (696)
T KOG2471|consen 309 ALRNSCSQLRNG-L-KPAKTF--------------------TLSQNKSMEILYNC----------GLLYLHSGRPLLAFQ 356 (696)
T ss_pred HHHHHHHHHhcc-C-CCCcce--------------------ehhcccchhhHHhh----------hHHHHhcCCcHHHHH
Confidence 996222212211 0 000000 01233445555555 888889999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHH
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~~ 294 (580)
+|.+++.. ...++.+|..++.|.+.
T Consensus 357 Cf~~av~v-----fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 357 CFQKAVHV-----FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHH-----HhcCcHHHHHHHHHHHH
Confidence 99988886 34467888888888764
No 293
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.23 E-value=0.17 Score=46.07 Aligned_cols=112 Identities=25% Similarity=0.227 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH--H
Q 008039 164 VLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI--K 241 (580)
Q Consensus 164 ~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~--k 241 (580)
..|......|+.+.++..+++++.+- .++.+... ++..-+......+ .
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly-----------~G~~l~~~-------------------~~~~W~~~~r~~l~~~ 60 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALY-----------RGDFLPDL-------------------DDEEWVEPERERLREL 60 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT-------------SSTTGGG-------------------TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHh-----------CCCCCCCC-------------------CccHHHHHHHHHHHHH
Confidence 34666778899999999999999773 22222100 1111111111111 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
.+......+..+...|+|++|+..+.+++.. +|.+-.+|..+-.+|..+|++.+|+..|.+...
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALAL-----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2344555677889999999999999999998 567889999999999999999999999988754
No 294
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=2.4 Score=45.99 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=170.5
Q ss_pred ccccchhhhHHHHHHHHHHHHH--------hhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 14 HWWLSNRKIVDKYIRDARTLIA--------TQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.+-++-++...+.|+.++.-+. ...++++..|-..|++||..+-++..+|..-|.+=+..+....|...+++
T Consensus 53 eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dR 132 (677)
T KOG1915|consen 53 EYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDR 132 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 4444556666666666655431 11368999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHH
Q 008039 86 YIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVL 165 (580)
Q Consensus 86 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~L 165 (580)
++..|+. .+..|.-|
T Consensus 133 Avt~lPR---------------------------------------------------------------VdqlWyKY-- 147 (677)
T KOG1915|consen 133 AVTILPR---------------------------------------------------------------VDQLWYKY-- 147 (677)
T ss_pred HHHhcch---------------------------------------------------------------HHHHHHHH--
Confidence 7732211 11234433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 166 GQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 166 G~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
--.--.+|++..|-..|++=+.. .|+......+.
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--------------------------------------~P~eqaW~sfI-------- 181 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--------------------------------------EPDEQAWLSFI-------- 181 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--------------------------------------CCcHHHHHHHH--------
Confidence 23345689999999999987654 25555444442
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
+--.+-+..+.|-..|.+-+-. +| ....|..-+.--.+-|+..-|...|.+|+..-.++..+ ..+
T Consensus 182 -----~fElRykeieraR~IYerfV~~-----HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~----e~l 246 (677)
T KOG1915|consen 182 -----KFELRYKEIERARSIYERFVLV-----HP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA----EIL 246 (677)
T ss_pred -----HHHHHhhHHHHHHHHHHHHhee-----cc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH----HHH
Confidence 2334567789999999999886 33 46677778888888999999999999999864433221 122
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHH---------------HHHHHHHHhhc
Q 008039 326 LETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTT---------------KIQELKQRVAS 390 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~---------------~~k~lk~~~~~ 390 (580)
+..--.|++....|+++--++.=+++. .|.. +-.++.+..-...+ +--+....+..
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~--~pk~-------raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDH--IPKG-------RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-------cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 222333444444444444443322221 1211 00111111111111 11122222333
Q ss_pred CCCCccchhhhhcccCCC-CHHHHHHHHHHHHhhcCC
Q 008039 391 GETGNVDYYALIGLRRGC-SRSELERAHLLLSLRHKP 426 (580)
Q Consensus 391 ~~~~~~d~y~iLgv~~~a-~~~ei~~ayr~lal~~hP 426 (580)
....-..+|..|.+..+. ..+.|+..|-+.....-|
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 223334466677766555 677888888876665555
No 295
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.13 E-value=0.21 Score=56.86 Aligned_cols=139 Identities=14% Similarity=0.031 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.||+.+.-+-..++.+.|+++|+++-.-+-.-+|-- -.++.....+.++.
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL------------------------------~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML------------------------------KEYPKQIEQYVRRK 909 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH------------------------------HhChHHHHHHHHhc
Confidence 367778888889999999999998532110000000 00112222222221
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
++-.-++==|.-+-..|+.+.|+..|..|-+ |+.+-.++.-+|+.++|-. |.-...+.-|.|
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------------~fs~VrI~C~qGk~~kAa~-----iA~esgd~AAcY 971 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD-------------YFSMVRIKCIQGKTDKAAR-----IAEESGDKAACY 971 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------hhhheeeEeeccCchHHHH-----HHHhcccHHHHH
Confidence 1111111116666678889999999987765 4555566667888888876 444567888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
.+|..|...|++.+|+..|.+|..+-+
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqafsn 998 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAFSN 998 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977643
No 296
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.07 E-value=0.011 Score=42.54 Aligned_cols=40 Identities=30% Similarity=0.235 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKAR 68 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~ 68 (580)
++..|+.+. ..|++++|+..|+++|+.+|+++.++..+|.
T Consensus 4 ~~~la~~~~---~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 4 WLALARAYR---RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666 6899999999999999999999999988775
No 297
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.05 E-value=0.012 Score=66.48 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCc
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS--SGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~--lg~~~eAl~~~~~Al~ldP~~ 315 (580)
..+......+.+||.+|..++|.+|.-.|..++.+. |..+...+.++.|.+.|++. +|+|..++.+|+-++...|..
T Consensus 48 v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~ll-p~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i 126 (748)
T KOG4151|consen 48 VFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLL-PKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRI 126 (748)
T ss_pred HHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheec-cccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchH
Confidence 344567788899999999999999999999999974 55567788999999988876 568999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.++++.|+.+|..++.++-|++++.-.
T Consensus 127 ~~~Ll~r~~~y~al~k~d~a~rdl~i~ 153 (748)
T KOG4151|consen 127 SKALLKRARKYEALNKLDLAVRDLRIV 153 (748)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995544
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.6 Score=47.69 Aligned_cols=61 Identities=26% Similarity=0.291 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
..+.-+.++..++ ..|++.+|...|..++..+|.+..+...+|+||+..|++++|...+..
T Consensus 133 ~~e~~~~~~~~~~---~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 133 EEEEALAEAKELI---EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHHhhhhh---hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3444556666666 789999999999999999999999999999999999999999987665
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=1.2 Score=44.05 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 166 GQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 166 G~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
+--+|+.++.++|+..+++++++-+.. +.... .+..
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~~--------------------------------------Grf~~------aAk~ 115 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTDM--------------------------------------GRFTM------AAKH 115 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHhh--------------------------------------hHHHH------HHhh
Confidence 334566679999999999999885321 10000 0111
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------HH
Q 008039 246 RRTAAIAALDA-GLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------IQ 317 (580)
Q Consensus 246 ~k~~G~~~~~~-g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------~~ 317 (580)
+.+-|..+-.. .+++.||.+|.++-+.--. ........++...+.--..+++|..||..|++.....-++ ++
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 22225555444 7899999999999876211 0111233566666666778999999999999988764443 34
Q ss_pred H-HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 318 A-LDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 318 A-~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
- ++.-|.|++-..+.-.+...+++..++
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 4 455567777778887887777777666
No 300
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=0.97 Score=48.85 Aligned_cols=184 Identities=10% Similarity=-0.014 Sum_probs=136.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCC
Q 008039 48 LLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDS 127 (580)
Q Consensus 48 ~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 127 (580)
-|+.-++-+|.+-.+|..--+..-..|.-+...+.|+++|... +|-
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv---------------------------pp~------- 355 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV---------------------------PPA------- 355 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC---------------------------Cch-------
Confidence 3677899999999999999999999999999999999988211 110
Q ss_pred CCCCCCcccccchHHHHHHHHhhhccccccchhH-----HHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 008039 128 LGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWR-----YLVLGQ-ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLS 201 (580)
Q Consensus 128 ~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~-----~~~LG~-a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~ 201 (580)
.+| .+|. |.+.+. .-....+.+.+-.+|+.|+.|-|
T Consensus 356 --------------~ek-------------r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----------- 397 (677)
T KOG1915|consen 356 --------------SEK-------------RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----------- 397 (677)
T ss_pred --------------hHH-------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-----------
Confidence 001 1222 211111 11456889999999999998742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc
Q 008039 202 DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL 281 (580)
Q Consensus 202 ~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~ 281 (580)
...| ....+..++ +.-..++.+...|-..+-.||..+ | .
T Consensus 398 HkkF-----------------------tFaKiWlmy------------A~feIRq~~l~~ARkiLG~AIG~c-P-----K 436 (677)
T KOG1915|consen 398 HKKF-----------------------TFAKIWLMY------------AQFEIRQLNLTGARKILGNAIGKC-P-----K 436 (677)
T ss_pred cccc-----------------------hHHHHHHHH------------HHHHHHHcccHHHHHHHHHHhccC-C-----c
Confidence 1112 123333333 566778899999999999999975 2 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
..++-..-..-.++++++.+...|++-|+-.|.+-.+|...|.+-..+|+.|.|...|+-|+.
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 344544455667889999999999999999999999999999999999999999999998853
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.90 E-value=0.017 Score=38.60 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++++.+|.++..+|+|++|+..|++++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999999883
No 302
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.014 Score=49.95 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=43.7
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
.--.||||.++++.+.|+.+||+.-+.-|||+.+++.- -..|+||+++|..+.
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYl------------------------AsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYL------------------------ASKINEAKDLLEGTS 109 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHH------------------------HHHHHHHHHHHhccc
Confidence 34568999999999999999999999999999877542 356899999766544
No 303
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.79 E-value=0.013 Score=37.18 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
.+++++|.++..+|++++|+..+.+++.++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467888888888899999998888888888753
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.15 Score=49.06 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.-+.++..++..|++++|+..++.++.. |.++....+.+.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---------------------------------------t~De~lk~l~~l- 130 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---------------------------------------TKDENLKALAAL- 130 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---------------------------------------chhHHHHHHHHH-
Confidence 4556899999999999999999988743 222333222211
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
.-+.+.+..|.+++|+..++..-. ....+...-.+|.+++..|+-++|...|.+++..+++..
T Consensus 131 -------RLArvq~q~~k~D~AL~~L~t~~~------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 -------RLARVQLQQKKADAALKTLDTIKE------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -------HHHHHHHHhhhHHHHHHHHhcccc------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 128889999999999988775544 344566677899999999999999999999999975543
No 305
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.73 E-value=2 Score=45.60 Aligned_cols=229 Identities=13% Similarity=0.044 Sum_probs=139.6
Q ss_pred HHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHH
Q 008039 33 LIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRE 112 (580)
Q Consensus 33 ~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (580)
+|+.+..|+.+.|..+-..|-++.|.-+-+....=..++..|+++.|+...+......-..++ .-.++
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~------------~aeR~ 228 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD------------VAERS 228 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh------------hHHHH
Confidence 345566789999999999999999999888888888888999999999887764321111110 01244
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccccchHHH--HHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008039 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLK--KKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 113 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~ 190 (580)
|+-||-... ...++.+.-. ......++..++ ..-.-..-+.++|..|++-++-..++.+.+..
T Consensus 229 rAvLLtAkA------------~s~ldadp~~Ar~~A~~a~KL~pd--lvPaav~AAralf~d~~~rKg~~ilE~aWK~e- 293 (531)
T COG3898 229 RAVLLTAKA------------MSLLDADPASARDDALEANKLAPD--LVPAAVVAARALFRDGNLRKGSKILETAWKAE- 293 (531)
T ss_pred HHHHHHHHH------------HHHhcCChHHHHHHHHHHhhcCCc--cchHHHHHHHHHHhccchhhhhhHHHHHHhcC-
Confidence 444443210 0000000000 011111111111 12233455788999999999988888877542
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008039 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIV 270 (580)
Q Consensus 191 ~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL 270 (580)
|- ..+ +..|....--+.++.-.+++-
T Consensus 294 -------------------------------------PH-P~i----------------a~lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 294 -------------------------------------PH-PDI----------------ALLYVRARSGDTALDRLKRAK 319 (531)
T ss_pred -------------------------------------CC-hHH----------------HHHHHHhcCCCcHHHHHHHHH
Confidence 21 222 222223333334444455443
Q ss_pred hccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHHHHH
Q 008039 271 DGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI-RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 271 ~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l-g~~~eAi~~~~~al~l 345 (580)
.+. .-.+.+....+.++.+-+.-|+|..|..-.+.++.+.|. ..+|..++.+-... ||-.+....+-+++.-
T Consensus 320 ~L~--slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLE--SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHH--hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 331 114557888888899999999999999999999999886 44566667766655 8888888888888544
No 306
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.73 E-value=2.5 Score=46.02 Aligned_cols=136 Identities=18% Similarity=0.075 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+-..+-+-..+|+.-.|+..-++.+++ |+......++.++
T Consensus 512 ~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------------------------------------~~lS~~~kfLGHi- 551 (696)
T KOG2471|consen 512 FANMAYVELELGDPIKALSAATKLLQL---------------------------------------ADLSKIYKFLGHI- 551 (696)
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHhh---------------------------------------hhhhhHHHHHHHH-
Confidence 334455667899999999988888876 3445555555443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----------------------CC------CCC-----cccHHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR----------------------RG------APQ-----GFLAECYMHR 288 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~----------------------~~------~~~-----~~~a~~~~nr 288 (580)
-.|.++.-..+..+|+.++.--+-.. +| ... .-...+++|+
T Consensus 552 ------YAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nL 625 (696)
T KOG2471|consen 552 ------YAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANL 625 (696)
T ss_pred ------HHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHH
Confidence 33667777788888888776521110 11 000 1135789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 289 AFAYRSSGRIAESIADCNKTLALEP--SCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 289 a~a~~~lg~~~eAl~~~~~Al~ldP--~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
|.++.-.|+++.|......|..+-| .+++|...+--+-.++|+...|+..+++..
T Consensus 626 a~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 626 AAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 9999999999999999999998877 778999888889999999999999888773
No 307
>PRK10941 hypothetical protein; Provisional
Probab=95.69 E-value=0.091 Score=53.58 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.-...+.|+=.+|...++++.|+.+++..+.++|+++.-+.-||-+|.++|++..|+.||+..++.
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345677889999999999999999999999999999999999999999999999999999999887
No 308
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.58 E-value=0.17 Score=55.83 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH--HHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL--DTRALL 325 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~--~~ra~~ 325 (580)
.+|..+...|+.++|++.|++++... ..-......+++.++.|++-+++|++|..++.+.++.+ .+.+++ |..|.|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQ-SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44999999999999999999998642 22345577899999999999999999999999998864 556664 566889
Q ss_pred HHhcCCh-------hHHHHHHHHHHHH
Q 008039 326 LETIRCL-------PDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~-------~eAi~~~~~al~l 345 (580)
+..+++. ++|...|.++-.+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999 8888888888666
No 309
>PRK10941 hypothetical protein; Provisional
Probab=95.57 E-value=0.049 Score=55.54 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=64.5
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
++++++..++...+..+. ..++++.|+...+..|.+.|+++.-+.-||.+|.++|.+..|+.+++.+|.. .|+++
T Consensus 175 ~~~~il~Rml~nLK~~~~--~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~---~P~dp 249 (269)
T PRK10941 175 DNIEVIRKLLDTLKAALM--EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ---CPEDP 249 (269)
T ss_pred CHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh---CCCch
Confidence 567788888888776552 6789999999999999999999999999999999999999999999997744 45444
No 310
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.42 E-value=0.028 Score=38.67 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++|.+|..+|+|++|+..|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999998776
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.39 E-value=1.8 Score=50.14 Aligned_cols=141 Identities=22% Similarity=0.151 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+.++|.+..-.|++++|..+.+.+.+++.. .+ -.+- ..+.
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~----------~~------------------------~~~l---~~~~-- 539 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQ----------HD------------------------VYHL---ALWS-- 539 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHH----------cc------------------------cHHH---HHHH--
Confidence 4667899999999999999999999888532 00 0111 1121
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CC
Q 008039 241 KLLLRRRTAAIAALDAG--LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE----PS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g--~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld----P~ 314 (580)
...++.++..+| .|.+....|...-... -...+...-+..-++.++..--+++.+.......+++- |.
T Consensus 540 -----~~~~s~il~~qGq~~~a~~~~~~~~~~~q~-l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~ 613 (894)
T COG2909 540 -----LLQQSEILEAQGQVARAEQEKAFNLIREQH-LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQ 613 (894)
T ss_pred -----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccc
Confidence 222355666666 3444444444332211 01133333334444444444444777777777777652 22
Q ss_pred --cHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 315 --CIQ-ALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 315 --~~~-A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
... +++.++.+....|++++|...+.....+.
T Consensus 614 ~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 614 PLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 222 23589999999999999999999998773
No 312
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.36 E-value=0.36 Score=53.38 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
..+...|..+++..+..-|++.-.+...|+++...|+.++|++.|++++.. +. .+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-q~---~~--------------------- 300 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIES-QS---EW--------------------- 300 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc-hh---hH---------------------
Confidence 456888999999999999999999999999999999999999999986511 00 00
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
+. -....++-+|.++..++++++|...|....+.
T Consensus 301 -------------------------~Q-----------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 301 -------------------------KQ-----------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred -------------------------Hh-----------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 00 00124677899999999999999999987754
No 313
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.33 E-value=0.026 Score=37.29 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 284 CYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 284 ~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
+++++|.|+.++|++++|+..+++.+...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4667777777777777777777777776665
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.24 E-value=0.038 Score=36.99 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~ 189 (580)
.|+.+|.+|..+|++++|+..|+++++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 57889999999999999999999999985
No 315
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.22 E-value=0.031 Score=38.45 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 284 CYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 284 ~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
+|.++|.+|..+|+|++|+..|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888888888888888885544
No 316
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.36 Score=49.24 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHH--
Q 008039 232 SVSQLLSHI--KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNK-- 307 (580)
Q Consensus 232 ~~~~ll~~~--k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~-- 307 (580)
.+..++.++ +.......++..+...|++.+|...|..++.. .+.+..+...++.||...|+.++|...+..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~-----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA-----APENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh-----CcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555444 23344566788999999999999999999997 334678888899999999999776554332
Q ss_pred --------------------------------HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 308 --------------------------------TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 --------------------------------Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+..||++..+.+.+|..+...|++++|+..+-..++.
T Consensus 196 ~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 196 LQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23449999999999999999999999998877766544
No 317
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=2.6 Score=42.53 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=62.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHh
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCN-KTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~-~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
+++.+..|+|++|......+|.- ++..+..+.|+-.+-..+|.-.++...+- +....+|+++-.
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~k-----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v---------- 278 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDK-----DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV---------- 278 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH----------
Confidence 88899999999999999999995 33468999999999999999988777655 444557776543
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
.++.+.-..|++++..
T Consensus 279 -k~~~ekeaeFDrl~~q 294 (299)
T KOG3081|consen 279 -KHLNEKEAEFDRLVLQ 294 (299)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 4566777777777554
No 318
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.81 E-value=6 Score=48.14 Aligned_cols=226 Identities=14% Similarity=0.057 Sum_probs=138.4
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhh
Q 008039 14 HWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALA-LSPRLELALELKARSLLY----LRRFKDVADMLQDYIP 88 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~-l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~ 88 (580)
...+.+|...--||+.--..| +.++.+.|-+..++||. ||++...=..+.=.+|+. -|--+...+.|+++-+
T Consensus 1449 rlvrssPNSSi~WI~YMaf~L---elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHL---ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHh---hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 457888888888888887777 78889999999999987 788766443333333332 2322333333333221
Q ss_pred hhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhc-cccccchhHHHHHHH
Q 008039 89 SLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCR-NCEKEGQWRYLVLGQ 167 (580)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~~~~~~~~~~~LG~ 167 (580)
-|. +..+ ..+| .+.+.-. . .-+..-.++..+-+ -.+....| ...|.
T Consensus 1526 ycd-----~~~V-----~~~L----~~iy~k~-------e----------k~~~A~ell~~m~KKF~q~~~vW--~~y~~ 1572 (1710)
T KOG1070|consen 1526 YCD-----AYTV-----HLKL----LGIYEKS-------E----------KNDEADELLRLMLKKFGQTRKVW--IMYAD 1572 (1710)
T ss_pred hcc-----hHHH-----HHHH----HHHHHHh-------h----------cchhHHHHHHHHHHHhcchhhHH--HHHHH
Confidence 110 0000 0000 0000000 0 00011122222111 11233344 55699
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRR 247 (580)
Q Consensus 168 a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k 247 (580)
.++...+-+.|..++++|+.-. |..+...-.-+.
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~l--------------------------------------Pk~eHv~~Iskf-------- 1606 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSL--------------------------------------PKQEHVEFISKF-------- 1606 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhc--------------------------------------chhhhHHHHHHH--------
Confidence 9999999999999999998652 332222222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE--PSCIQALDTRALL 325 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld--P~~~~A~~~ra~~ 325 (580)
+..-|+.|+-+.+-..|...+.. .|.+.++|+-....-++.|+.+.....|+++|.+. |...+-+|.+=--
T Consensus 1607 --AqLEFk~GDaeRGRtlfEgll~a-----yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1607 --AQLEFKYGDAERGRTLFEGLLSA-----YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred --HHHHhhcCCchhhHHHHHHHHhh-----CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 77889999999999999999985 56688999988888999999999999999999874 5555555554444
Q ss_pred HHh
Q 008039 326 LET 328 (580)
Q Consensus 326 ~~~ 328 (580)
|.+
T Consensus 1680 yEk 1682 (1710)
T KOG1070|consen 1680 YEK 1682 (1710)
T ss_pred HHH
Confidence 443
No 319
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.66 E-value=0.17 Score=55.63 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=103.9
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH-LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~-lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
+.++..-+..|+.+++ .-|.+++++..|++ .|+.-+|+.++..++.+.
T Consensus 195 ~~~~~~~~~~glq~~~---~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~---------------------------- 243 (886)
T KOG4507|consen 195 IDDIGHLIHEGLQKNT---SSWVLHNMASFYWRIKGEPYQAVECAMRALHFS---------------------------- 243 (886)
T ss_pred HHHHHHHHHHhhhcCc---hhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhC----------------------------
Confidence 3445555555654443 35888899999977 599999999999988663
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC
Q 008039 218 TPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~ 297 (580)
|++..-..++.. |..+++.|...+|--.+..|++- .+....-++-++.++..+|.
T Consensus 244 ----------~~h~kdi~lLSl----------aTiL~RaG~sadA~iILhAA~~d-----A~~~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 244 ----------SRHNKDIALLSL----------ATVLHRAGFSADAAVILHAALDD-----ADFFTSNYYTLGNIYAMLGE 298 (886)
T ss_pred ----------CcccccchhhhH----------HHHHHHcccccchhheeehhccC-----CccccccceeHHHHHHHHhh
Confidence 222222333444 99999999999999989888873 22333448899999999999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|...+-.|..+.+.+|.+..+.-.++.+-.-+.+...++
T Consensus 299 ~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kl 337 (886)
T KOG4507|consen 299 YNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKL 337 (886)
T ss_pred hhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888777665544444444443
No 320
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.38 E-value=0.056 Score=59.10 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=46.3
Q ss_pred hhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008039 399 YALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSS 468 (580)
Q Consensus 399 y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~ 468 (580)
++-+++.--.+...||++|||.+|..||||.++-... .++++-|+++|-.+++|+..
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas-------------~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGAS-------------LEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccCCccc-------------HHHHHHHHHHHHHHHHHHHh
Confidence 3445566677889999999999999999998765432 34789999999999999984
No 321
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.36 E-value=0.16 Score=51.84 Aligned_cols=81 Identities=19% Similarity=0.084 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
+++.-....+....+.|+.+.|...|..|+.+ .|.++.++...|.....-++.-+|=.+|-+||.++|.+.+|+.
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal-----aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL-----APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-----CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 33333334466778899999999999999998 4668999999999998889999999999999999999999999
Q ss_pred HHHHHH
Q 008039 321 TRALLL 326 (580)
Q Consensus 321 ~ra~~~ 326 (580)
+|+...
T Consensus 189 nR~RT~ 194 (472)
T KOG3824|consen 189 NRARTT 194 (472)
T ss_pred hhhccc
Confidence 998654
No 322
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.68 Score=47.97 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=76.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
-.++|-.|+...-...+.++|..-.+ ..|...-+.-..+.++...|-|++|....++++++||.+.-+....+.++...
T Consensus 144 h~a~fy~G~~~~~k~ai~kIip~wn~-dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~ 222 (491)
T KOG2610|consen 144 HDAHFYNGNQIGKKNAIEKIIPKWNA-DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMN 222 (491)
T ss_pred hhHHHhccchhhhhhHHHHhccccCC-CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhc
Confidence 55778889998888888888875212 24444555666788999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
|++.|+.+..++-
T Consensus 223 ~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 223 GRHKEGKEFMYKT 235 (491)
T ss_pred chhhhHHHHHHhc
Confidence 9999999887765
No 323
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.20 E-value=1.3 Score=41.53 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=88.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
....|..+|......+ ..++..++..+++..-.+.|..+.....-|..++..|+|.+|+..++.+. ...|..+
T Consensus 6 ~~~iv~gLie~~~~al---~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~---~~~~~~p- 78 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVAL---RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE---ERAPGFP- 78 (160)
T ss_pred cHHHHHHHHHHHHHHH---ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh---ccCCCCh-
Confidence 4557888888888877 67899999999999999999999999999999999999999999998833 1111111
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
-.+.|..+|.....+.-|+.+ +.-....|--.++
T Consensus 79 --------------------------------------------~~kALlA~CL~~~~D~~Wr~~--A~evle~~~d~~a 112 (160)
T PF09613_consen 79 --------------------------------------------YAKALLALCLYALGDPSWRRY--ADEVLESGADPDA 112 (160)
T ss_pred --------------------------------------------HHHHHHHHHHHHcCChHHHHH--HHHHHhcCCChHH
Confidence 124455667777777788876 5555666667777
Q ss_pred HHHHHHHHHH
Q 008039 179 MVLLQTGKRL 188 (580)
Q Consensus 179 i~~l~~al~l 188 (580)
..+.+..+..
T Consensus 113 ~~Lv~~Ll~~ 122 (160)
T PF09613_consen 113 RALVRALLAR 122 (160)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.11 E-value=6.3 Score=44.58 Aligned_cols=182 Identities=17% Similarity=0.045 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----cChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHh
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYL-----RRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l-----~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
+...|...+..+-... +..+....|.|++.- +..+.|+.+|..+.+.++.+
T Consensus 227 ~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~---------------------- 282 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA---------------------- 282 (552)
T ss_pred hhhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH----------------------
Confidence 4567888888777664 567777788888884 67889999888866421110
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHH
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG-----LMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG-----~~eeAi~~l~~al~l~~ 190 (580)
...+ ..-+.+.+|.+|.... +.+.|+.+|.++..+
T Consensus 283 ------------------------------a~~~--------~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-- 322 (552)
T KOG1550|consen 283 ------------------------------ATKG--------LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-- 322 (552)
T ss_pred ------------------------------Hhhc--------CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--
Confidence 0000 0013456788887754 667799999988755
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 008039 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA---GLYSEAIRHFS 267 (580)
Q Consensus 191 ~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~---g~y~eAi~~y~ 267 (580)
++..+..++ |..+... .++..|..+|.
T Consensus 323 --------------------------------------g~~~a~~~l------------g~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 323 --------------------------------------GNPDAQYLL------------GVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred --------------------------------------CCchHHHHH------------HHHHHcCCccccHHHHHHHHH
Confidence 122222222 4444433 47899999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFAYRSS----GRIAESIADCNKTLALEPSCIQALDTRALLLETI-RCLPDCLHDLEHL 342 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a~~~l----g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l-g~~~eAi~~~~~a 342 (580)
.|.... ...+++++|.||..- -+...|..++.++.+.+ ++.|.+.++..+... +.++.+...+...
T Consensus 353 ~Aa~~G-------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 353 LAAKAG-------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHcC-------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 999852 678899999999863 46889999999999987 788888888777655 8888888777766
Q ss_pred HHH
Q 008039 343 KLL 345 (580)
Q Consensus 343 l~l 345 (580)
.++
T Consensus 424 a~~ 426 (552)
T KOG1550|consen 424 AEL 426 (552)
T ss_pred HHh
Confidence 554
No 325
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.07 E-value=1 Score=49.20 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPS--CIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.-+-..+|+|..++|+.++||+.+...++..|. +...+.++..+++.++.|.++...+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344567899999999999999999999988775 5678999999999999999998888775
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.93 E-value=0.058 Score=35.58 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+|++++|.++..+|++++|+..|+++++.+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 478999999999999999999999998774
No 327
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.87 E-value=1.1 Score=39.75 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=68.5
Q ss_pred ChhhHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 38 EHSEIASALSLLDAALALSPR------------LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~------------~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
..|-|++|...+.+|++++-. ++-.+.-++.++..||||++++..-+.++.-.....
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG----------- 89 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG----------- 89 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH------------
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc-----------
Confidence 468899999999999997643 235677799999999999999998887663322211
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhH--HHHHHHHHHhcCCHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWR--YLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~--~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
. | +.+.-.+|. .+..+.++-.+|+.++|+..|+
T Consensus 90 ---------E-L-----------------------------------~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr 124 (144)
T PF12968_consen 90 ---------E-L-----------------------------------HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFR 124 (144)
T ss_dssp -----------T-----------------------------------TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ---------c-c-----------------------------------ccccchhHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0 0 122233454 4668899999999999999999
Q ss_pred HHHHHH
Q 008039 184 TGKRLA 189 (580)
Q Consensus 184 ~al~l~ 189 (580)
.+-++-
T Consensus 125 ~agEMi 130 (144)
T PF12968_consen 125 MAGEMI 130 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 328
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.80 E-value=0.31 Score=42.58 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=71.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR-----------IAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~-----------~~eAl~~~~~Al~ldP~~~~A 318 (580)
+..+|..|++-+|++..+..+... ++ ....+.++.--|.++..+.. .-.+++.+.++..+.|..+..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h-~~-~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRH-GE-DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHc-cC-CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 678899999999999999999863 22 22223566666888866542 345899999999999999888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++.+|.=+-....|++++...++++.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888888877777777777777776544
No 329
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=0.42 Score=53.16 Aligned_cols=100 Identities=9% Similarity=-0.000 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+...+..+|+..+|..+++.|...+.....+ -....+.+..+++.||+++.+.+.|++++.+|=+.||.++-.-+..-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3456888999999999999999998863111 112247889999999999999999999999999999999998888888
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
+...-+.-++|+....+....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 999999999999988887655
No 330
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.47 E-value=13 Score=39.87 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=84.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 008039 163 LVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL 242 (580)
Q Consensus 163 ~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~ 242 (580)
+.+=.+|....+++.=+.+.+..-.+.. ...++...+..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~----------------------------------~~~~~~~~i~~~y----- 185 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPT----------------------------------CDVANQHNIKFQY----- 185 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCc----------------------------------cchhcchHHHHHH-----
Confidence 3444568888888888888776543310 0013445555555
Q ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHh
Q 008039 243 LLRRRTAAIAALD---AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS---------GRIAESIADCNKTLA 310 (580)
Q Consensus 243 ~~~~k~~G~~~~~---~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l---------g~~~eAl~~~~~Al~ 310 (580)
|.++.+ .|+.++|+..+..++.-. .+..+..|.-.|.+|..+ ...+.|+..|.++.+
T Consensus 186 -------afALnRrn~~gdre~Al~il~~~l~~~----~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 186 -------AFALNRRNKPGDREKALQILLPVLESD----ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred -------HHHHhhcccCCCHHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 777777 999999999999977743 334678888888888642 247889999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 311 LEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 311 ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
++|+...+ .+.+.++...|.-.+....+++
T Consensus 255 ~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 255 IEPDYYSG-INAATLLMLAGHDFETSEELRK 284 (374)
T ss_pred CCccccch-HHHHHHHHHcCCcccchHHHHH
Confidence 99765333 4455555555554444333333
No 331
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=2.5 Score=42.16 Aligned_cols=140 Identities=12% Similarity=0.029 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
|..-+.+|....++++|...+.++.+--. +-..++.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yE-----------------------------------------nnrslfh--- 69 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYE-----------------------------------------NNRSLFH--- 69 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH-----------------------------------------hcccHHH---
Confidence 44556677778889999998888774321 0011111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------ 315 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------ 315 (580)
....+...|..+-+...|.|++.+|.+|+.+--....|..+..-..++.=.+...+.++|+..|.+++.+-...
T Consensus 70 AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 70 AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 11222333666777888999999999998862222244556666667777778889999999999998773222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+-+-..+.+|..++.|+||-..+.+-.-+
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 344556678899999999998888776544
No 332
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=1.1 Score=52.49 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=58.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----------------
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP---------------- 313 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP---------------- 313 (580)
|+.+|..|.|+.|--+|...-. |..++..+..+|+|..|++..++|-...-
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~vSN-------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNVSN-------------FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence 9999999999999888874433 67789999999999999998877643210
Q ss_pred ---------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 314 ---------SCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 314 ---------~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
-+++-+-.+-.-|...|-|+|-+..++.++-|
T Consensus 1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 01222333445566777777777777776555
No 333
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.06 E-value=0.18 Score=55.42 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=85.6
Q ss_pred cccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q 008039 153 NCEKEGQWRYLVLGQACCH-LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE 231 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~-lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~ 231 (580)
+......|..++++-.|++ .|+...|+++++.++-+.|. ..
T Consensus 600 ~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~--------------------------------------~~ 641 (886)
T KOG4507|consen 600 NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPL--------------------------------------QQ 641 (886)
T ss_pred cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChh--------------------------------------hh
Confidence 4455667776667666655 68999999999988765421 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 232 SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 232 ~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.+ .+... ++.+.+-|-.-+|-..+.++|.++ ...+..++-+|.+++.+.+.+.|++.+..|+.+
T Consensus 642 ~v-~~v~l----------a~~~~~~~~~~da~~~l~q~l~~~-----~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 642 DV-PLVNL----------ANLLIHYGLHLDATKLLLQALAIN-----SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cc-cHHHH----------HHHHHHhhhhccHHHHHHHHHhhc-----ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 11 11122 788888888899999999999873 113456778899999999999999999999999
Q ss_pred CCCcHHHHHHHHH
Q 008039 312 EPSCIQALDTRAL 324 (580)
Q Consensus 312 dP~~~~A~~~ra~ 324 (580)
+|+++..-..+-.
T Consensus 706 ~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 706 TTKCPECENSLKL 718 (886)
T ss_pred CCCChhhHHHHHH
Confidence 9999876544433
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.86 E-value=0.71 Score=37.78 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
..++|.-+|...+.++|+..++++|+.. ++ .+....++-.+..+|...|+|.+.+.+.-+=+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI-TD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc-CC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999999999999999999962 33 4557788888999999999999999887765554
No 335
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.85 E-value=0.86 Score=38.45 Aligned_cols=77 Identities=9% Similarity=-0.033 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCChhHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
.+..+.+.+.. .|.+..+.+.+|.+++..|++++|++-+-.++..++++ ..+...+-.++..+|.-+.-+..|
T Consensus 7 ~~~al~~~~a~-----~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAA-----NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHH-----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 35567777775 34578899999999999999999999999999999877 677777788888888877777777
Q ss_pred HHHH
Q 008039 340 EHLK 343 (580)
Q Consensus 340 ~~al 343 (580)
++-+
T Consensus 82 RRkL 85 (90)
T PF14561_consen 82 RRKL 85 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 336
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.81 E-value=6.1 Score=42.14 Aligned_cols=185 Identities=15% Similarity=0.027 Sum_probs=113.1
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc--CCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCC
Q 008039 51 AALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA--NDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSL 128 (580)
Q Consensus 51 ~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 128 (580)
..|..+|.+...+...+.++..+|++..|.+.++++|=.++.+ |.... -+.. +..+.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~-------------~~~~-~~~g~------- 89 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP-------------FRSN-LTSGN------- 89 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhcc-cccCc-------
Confidence 4568999999999999999999999999999999987433221 11000 0000 00000
Q ss_pred CCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCC
Q 008039 129 GRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFS 208 (580)
Q Consensus 129 ~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~ 208 (580)
+.++... ..+..-..+.+.....+.+.|-+..|+++.+-.+.|+
T Consensus 90 ------~rL~~~~-----------~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd------------------- 133 (360)
T PF04910_consen 90 ------CRLDYRR-----------PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD------------------- 133 (360)
T ss_pred ------cccCCcc-----------ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------------------
Confidence 0011100 1111222234445678889999999999888877663
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHH
Q 008039 209 KFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHR 288 (580)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nr 288 (580)
|+.+.+..++-. --.+.+.++|+=-|+.+...............+..-+.+
T Consensus 134 -------------------p~~DP~g~ll~I----------D~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 134 -------------------PDEDPLGVLLFI----------DYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred -------------------CCCCcchhHHHH----------HHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 332222222211 334568899988888888765521010001134577888
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHhcCCCcHHHHHH
Q 008039 289 AFAYRSSGRI---------------AESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 289 a~a~~~lg~~---------------~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
+.+++.+++- +.|-....+||..-|.-...++.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999988 78888888888876655444433
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.79 E-value=1.9 Score=39.85 Aligned_cols=114 Identities=17% Similarity=0.251 Sum_probs=86.5
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+..++..+|+..+..+ ..++..++..+++..--+.|+.+.....-|.+++..|+|.||+..++.... . .
T Consensus 6 s~~iv~gLi~~~~~aL---~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~---~----~- 74 (153)
T TIGR02561 6 SNRLLGGLIEVLMYAL---RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS---S----A- 74 (153)
T ss_pred cHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc---c----C-
Confidence 3457778888887777 478899999999999999999999999999999999999999999988331 0 0
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
..+ --.+.|..+|.+...+..|+.+ +......|...++
T Consensus 75 ---------------------------------~~~-------p~~kAL~A~CL~al~Dp~Wr~~--A~~~le~~~~~~a 112 (153)
T TIGR02561 75 ---------------------------------GAP-------PYGKALLALCLNAKGDAEWHVH--ADEVLARDADADA 112 (153)
T ss_pred ---------------------------------CCc-------hHHHHHHHHHHHhcCChHHHHH--HHHHHHhCCCHhH
Confidence 000 0124455567777777788876 5556677888888
Q ss_pred HHHHHHH
Q 008039 179 MVLLQTG 185 (580)
Q Consensus 179 i~~l~~a 185 (580)
+.+.+..
T Consensus 113 ~~Lv~al 119 (153)
T TIGR02561 113 VALVRAL 119 (153)
T ss_pred HHHHHHH
Confidence 8776654
No 338
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.77 E-value=0.58 Score=46.12 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=71.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccC--CCCCcccHHHHHHHHHHHHHcCChH-------HHHHHHHHHHhcCC------C
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRR--GAPQGFLAECYMHRAFAYRSSGRIA-------ESIADCNKTLALEP------S 314 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~--~~~~~~~a~~~~nra~a~~~lg~~~-------eAl~~~~~Al~ldP------~ 314 (580)
+..+-....+++|++.|.-||-... .......+.++..+|.+|..+|+.+ .|+..|.++++... +
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 3355566789999999998876421 1123346888999999999999944 46666666665532 2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
....++.+|.+...+|++++|+..|.+++..
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 2678899999999999999999999999654
No 339
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=18 Score=39.65 Aligned_cols=203 Identities=13% Similarity=0.038 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHHHHhcC------C-Cc-------HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 38 EHSEIASALSLLDAALALS------P-RL-------ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~------P-~~-------~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
..|=+++|..+-|++|... | .+ -..+++++.|-+-.|+|.+|++...+....+...|.-.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~------ 360 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL------ 360 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH------
Confidence 4577888888888877643 2 11 14577889999999999999998887654443332100
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
++. .+ ..-..+.+|.-+...|.++.|...|.
T Consensus 361 ------------Llr--------------~~-----------------------~~~ih~LlGlys~sv~~~enAe~hf~ 391 (629)
T KOG2300|consen 361 ------------LLR--------------AH-----------------------EAQIHMLLGLYSHSVNCYENAEFHFI 391 (629)
T ss_pred ------------HHH--------------Hh-----------------------HHHHHHHHhhHhhhcchHHHHHHHHH
Confidence 000 00 00135678999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAI 263 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi 263 (580)
.+.++.. ..+...+. -...+..|.+.|+-+.
T Consensus 392 ~a~k~t~---------------------------------------~~dl~a~~--------nlnlAi~YL~~~~~ed-- 422 (629)
T KOG2300|consen 392 EATKLTE---------------------------------------SIDLQAFC--------NLNLAISYLRIGDAED-- 422 (629)
T ss_pred HHHHhhh---------------------------------------HHHHHHHH--------HHhHHHHHHHhccHHH--
Confidence 9988731 11111111 1122778888776543
Q ss_pred HHHHHHHhccCCC-CC-----cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHhcCC
Q 008039 264 RHFSKIVDGRRGA-PQ-----GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--S----CIQALDTRALLLETIRC 331 (580)
Q Consensus 264 ~~y~~AL~~~~~~-~~-----~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--~----~~~A~~~ra~~~~~lg~ 331 (580)
|.++++...|. .. ...+.+++-.|.-.+..+++.||.....+.|++.- + ..-.+..++.+...+|+
T Consensus 423 --~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn 500 (629)
T KOG2300|consen 423 --LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGN 500 (629)
T ss_pred --HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 44455442222 22 23467888899999999999999999999998751 0 12345667889999999
Q ss_pred hhHHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLLY 346 (580)
Q Consensus 332 ~~eAi~~~~~al~l~ 346 (580)
..++....+-++++.
T Consensus 501 ~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 501 TVESRNMVRPAMQLA 515 (629)
T ss_pred hHHHHhccchHHHHH
Confidence 999999988888874
No 340
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.73 E-value=0.22 Score=34.51 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
++.++|.+|..+|+|++|+..+++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 34455555555555555555555555554
No 341
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.62 E-value=2.9 Score=42.86 Aligned_cols=131 Identities=8% Similarity=-0.046 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|..+.....+.+..+.|-..|.+|+.-. +-.-.+...+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--------------------------------------~~~~~vy~~~--- 41 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--------------------------------------RCTYHVYVAY--- 41 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------------------CS-THHHHHH---
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC--------------------------------------CCCHHHHHHH---
Confidence 45566777888888999999999987320 1112222222
Q ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH---
Q 008039 241 KLLLRRRTAAIAALD-AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI--- 316 (580)
Q Consensus 241 k~~~~~k~~G~~~~~-~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~--- 316 (580)
|..-+. .++...|...|+.+++. .+.+..++.....-+..+|+.+.|...|++++..-|...
T Consensus 42 ---------A~~E~~~~~d~~~A~~Ife~glk~-----f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~ 107 (280)
T PF05843_consen 42 ---------ALMEYYCNKDPKRARKIFERGLKK-----FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSK 107 (280)
T ss_dssp ---------HHHHHHTCS-HHHHHHHHHHHHHH-----HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCH
T ss_pred ---------HHHHHHhCCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHH
Confidence 555555 67777799999999997 455778888888889999999999999999998866655
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..|.....-=...|+++.....++++.+++
T Consensus 108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 108 KIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 456666666677888888888888887773
No 342
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.61 E-value=3.5 Score=42.15 Aligned_cols=134 Identities=12% Similarity=-0.030 Sum_probs=95.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRT 248 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~ 248 (580)
.+..|+++-|..+|.++-.+.. ..+|+. +..+- .-..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~----------------------------------~~~~~~--~~~La------~~~yn 40 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN----------------------------------SLDPDM--AEELA------RVCYN 40 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh----------------------------------cCCcHH--HHHHH------HHHHH
Confidence 4578999999999999876631 012322 21111 12233
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhccCC---------CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCC
Q 008039 249 AAIAALDAG-LYSEAIRHFSKIVDGRRG---------APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA----LEPS 314 (580)
Q Consensus 249 ~G~~~~~~g-~y~eAi~~y~~AL~~~~~---------~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~----ldP~ 314 (580)
-|..+++.+ +|++|+..++++.++.+. +.......++..++.+|+..+.++.... |.+++. --|+
T Consensus 41 ~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 41 IGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC
Confidence 499999999 999999999999887311 1123467888899999999988754333 444443 3588
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+..++..=.++...++.+++...+.+++.-
T Consensus 120 ~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 120 KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 8888877777888899999999999999765
No 343
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.48 E-value=0.78 Score=52.95 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChh
Q 008039 254 LDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 254 ~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~ 333 (580)
...++|..|+....+.+.- +|...-+....|..+.++|+.++|...++..-.+.+++...+-.+-.+|..+++++
T Consensus 20 ld~~qfkkal~~~~kllkk-----~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK-----HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3455556666666655553 23233344444555666666666663333333334455555555555666666666
Q ss_pred HHHHHHHHHHHH
Q 008039 334 DCLHDLEHLKLL 345 (580)
Q Consensus 334 eAi~~~~~al~l 345 (580)
+|+..|++++.-
T Consensus 95 ~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 95 EAVHLYERANQK 106 (932)
T ss_pred HHHHHHHHHHhh
Confidence 666666666444
No 344
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.40 E-value=0.52 Score=39.92 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQG----FLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~----~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
..++.|+|.+|++.+.+..+........ ....++.++|.++...|++++|+..+++||.+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467888999988888877752111111 11233444455555555555555555555444
No 345
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=3.7 Score=42.78 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
++-.+...|-+++|.+.-++++++++ ..+......
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~----------------------------------------~D~Wa~Ha~----- 215 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINR----------------------------------------FDCWASHAK----- 215 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCC----------------------------------------cchHHHHHH-----
Confidence 45567778899999999888887741 222222222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
+-++--.|++.++.+...+.-..-+ ...-....-|-.-+.+|+.-+.|+.|+..|++-|
T Consensus 216 -----aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 216 -----AHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -----HHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 6667778888888887766543211 0011123446677889999999999999998766
No 346
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.99 E-value=0.95 Score=34.22 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
+|.++.+++++|++++|..+.+.++++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456899999999999999999999987
No 347
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.84 E-value=0.53 Score=51.33 Aligned_cols=107 Identities=18% Similarity=0.098 Sum_probs=77.1
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
-++.++.+.+++...+ ..+.+..|+..|.+++...|.....|.++|.+|+..+=..++...+++-..+++++|
T Consensus 370 L~e~ie~~~~egnd~l---y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~---- 442 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGL---YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP---- 442 (758)
T ss_pred chHHHHHHHhhccchh---hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh----
Confidence 3456777777776665 467899999999999999999999999999999986554444444443222323321
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
-.+-+|+.|+.+++.++++.+|
T Consensus 443 ----------------------------------------------------------s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 443 ----------------------------------------------------------SIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHhhHHHh
Confidence 0012577899999999999999
Q ss_pred HHHHHHHHHHHH
Q 008039 179 MVLLQTGKRLAT 190 (580)
Q Consensus 179 i~~l~~al~l~~ 190 (580)
+.+...+....|
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 998876655433
No 348
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.71 E-value=0.33 Score=34.03 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
+.|..+|.+-...++|++|+.||++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999988843
No 349
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.53 E-value=10 Score=40.60 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+...+..+..+.+-.|+++.|+..+.+++.+.|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 556677788888999999999999999999976544
No 350
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.12 E-value=0.79 Score=41.53 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=55.7
Q ss_pred HHHHHHc---CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDA---GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~---g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
+.++.+. .+..+.|.+++..+.-..| ...-.+.|.++..+.++|+|+.++.+++..|+.+|+|.+|....-.+
T Consensus 39 AwaLV~S~~~~dv~~GI~iLe~l~~~~~~---~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 39 AWALVRSRDTEDVQEGIVILEDLLKSAHP---ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHcccchHHHHHhHHHHHHHhhhcCc---ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4455443 3467788888888862122 23567888999999999999999999999999999999986544333
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.07 E-value=5.1 Score=45.30 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=72.4
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 250 AIAALDAG-----LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG---RIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 250 G~~~~~~g-----~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg---~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|..+++.. ++..|+.+|.++-... ++.+.+++|.+|..-. ++..|..+|..|... .++.|.++
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 66776643 7899999999999973 5677889999998866 568999999998865 79999999
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHH
Q 008039 322 RALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~----lg~~~eAi~~~~~al~l 345 (580)
+|.+|.. ..+...|...|.++.+.
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 9999975 35788999999999766
No 352
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.02 E-value=3.8 Score=39.08 Aligned_cols=93 Identities=13% Similarity=-0.029 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cHH----HHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS--CIQ----ALDT 321 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--~~~----A~~~ 321 (580)
+.|+-+.+.|++++|+++|.++.+.+ ........+++++-.+.+..|+|.....+..++-.+-.. +.. ....
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44999999999999999999988863 223446788899999999999999999999998766322 211 1222
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~a 342 (580)
.|-.++..++|.+|...|-.+
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHhchHHHHHHHHHcc
Confidence 344555566666666655444
No 353
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.85 E-value=9.9 Score=43.41 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=29.5
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 292 YRSSGRIAESIADCNKTLALEPSC-IQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 292 ~~~lg~~~eAl~~~~~Al~ldP~~-~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
|-+-|.+++-+....+ ..|++ .+.+.+.|.-|...|+..+|...|-++-
T Consensus 860 ydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 3344555544443332 23333 4567788888888888888877665553
No 354
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.83 E-value=0.27 Score=30.72 Aligned_cols=29 Identities=17% Similarity=0.025 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++.+|.++..++++++|+..|++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 57899999999999999999999999766
No 355
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.63 E-value=21 Score=36.25 Aligned_cols=77 Identities=12% Similarity=-0.018 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC----
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRALLLETIR---- 330 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg---- 330 (580)
...|+..|.++-... ...+.+++|.+|.. -.++.+|+.+|.+|.+... ..+++.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~-------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 171 DKKALYLYRKAAELG-------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred HHhHHHHHHHHHHhc-------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCch
Confidence 358999999998862 67888999988866 3378999999999999876 89999999 666555
Q ss_pred -----------ChhHHHHHHHHHHHH
Q 008039 331 -----------CLPDCLHDLEHLKLL 345 (580)
Q Consensus 331 -----------~~~eAi~~~~~al~l 345 (580)
+...|...|..+...
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHc
Confidence 677777777777444
No 356
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.52 E-value=3.9 Score=38.27 Aligned_cols=79 Identities=14% Similarity=-0.008 Sum_probs=66.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
.......++.+++...+...--+ .|....+-..-|..++..|+|.+|+..++.+.+-.|.++-+--.++.|+..+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL-----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL-----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 77778888999998887766555 3447788888899999999999999999999998999988888889999888
Q ss_pred CChh
Q 008039 330 RCLP 333 (580)
Q Consensus 330 g~~~ 333 (580)
|+.+
T Consensus 92 ~D~~ 95 (160)
T PF09613_consen 92 GDPS 95 (160)
T ss_pred CChH
Confidence 8754
No 357
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.45 E-value=27 Score=37.22 Aligned_cols=163 Identities=14% Similarity=-0.015 Sum_probs=105.6
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCC---CChHHH
Q 008039 157 EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTM---TESESV 233 (580)
Q Consensus 157 ~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~d---Pd~~~~ 233 (580)
-.+..++.++.++..+|+++.|.+++++|+-.-...+.. .|...... ......+++ +++...
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~--------~F~~~~~~-------~~~g~~rL~~~~~eNR~f 102 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHP--------SFSPFRSN-------LTSGNCRLDYRRPENRQF 102 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH--------Hhhhhhcc-------cccCccccCCccccchHH
Confidence 344567889999999999999999999998553211110 11000000 000011222 333433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-
Q 008039 234 -SQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL- 311 (580)
Q Consensus 234 -~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l- 311 (580)
..+++. ...+.+.|-|..|++..+-.+.+ ||..+|.. +++.+-...++.++|+-=+..++.....
T Consensus 103 flal~r~----------i~~L~~RG~~rTAlE~~KlLlsL-dp~~DP~g--~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 103 FLALFRY----------IQSLGRRGCWRTALEWCKLLLSL-DPDEDPLG--VLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred HHHHHHH----------HHHHHhcCcHHHHHHHHHHHHhc-CCCCCcch--hHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence 334444 77788999999999999999997 56555543 4455566667778888777777765542
Q ss_pred CCC----cHHHHHHHHHHHHhcCCh---------------hHHHHHHHHHHHHHH
Q 008039 312 EPS----CIQALDTRALLLETIRCL---------------PDCLHDLEHLKLLYN 347 (580)
Q Consensus 312 dP~----~~~A~~~ra~~~~~lg~~---------------~eAi~~~~~al~l~~ 347 (580)
..+ .+.--+..+-++..+++- +.|-..+++|+..++
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 111 234557788888888888 899999999988753
No 358
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.33 E-value=0.66 Score=32.03 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
+.++.|+|.+|..+|++++|+..+.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467899999999999999999999999986
No 359
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.32 E-value=2.4 Score=37.14 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHH-HHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESV-SQLLSHIKLL 243 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~-~~ll~~~k~~ 243 (580)
++.-++..|++-+|+++.+..+... ++...+ .-..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h--------------------------------------~~~~~~~~lh~------ 37 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH--------------------------------------GEDESSWLLHR------ 37 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc--------------------------------------cCCCchHHHHH------
Confidence 3567899999999999999876442 111211 1111
Q ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 244 LRRRTAAIAALDAG-----------LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 244 ~~~k~~G~~~~~~g-----------~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
.+|.++++.. -.-.++++|.+++.+ .|..+..++.+|.-+-...-|++++.-|.++|.+.
T Consensus 38 ----~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 38 ----LQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred ----HHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 2265555433 356799999999998 45678899999988777778999999999998763
No 360
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.23 E-value=0.66 Score=42.58 Aligned_cols=53 Identities=28% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHH
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDV 79 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eA 79 (580)
+..++.++..+ ..||+.-|+++++.++..+|++..+..++|.+|.++|.-.+.
T Consensus 71 d~vl~~A~~~~---~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 71 DKVLERAQAAL---AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHH---HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 44556666665 589999999999999999999999999999999998765443
No 361
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.17 E-value=4.1 Score=46.13 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLE 327 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~ 327 (580)
+.|..+.....|++|.++|.+.-.. -|...|++.+.+|++ ++.....=|++.+.+-.+|+.+.
T Consensus 801 ~ig~~fa~~~~We~A~~yY~~~~~~-------------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 801 NIGETFAEMMEWEEAAKYYSYCGDT-------------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch-------------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHH
Confidence 3488899999999999999877553 245677777777764 33333334778888888899999
Q ss_pred hcCChhHHHHHHHH
Q 008039 328 TIRCLPDCLHDLEH 341 (580)
Q Consensus 328 ~lg~~~eAi~~~~~ 341 (580)
..|.-++|+..|-+
T Consensus 864 svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLR 877 (1189)
T ss_pred hhchHHHHHHHHHh
Confidence 99999998887754
No 362
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.17 E-value=0.95 Score=48.72 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=57.3
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
++.+ +..++.+|.-|+ .+|+|..+.-.-.=...++| |+.++.+.|.|++...+|.||.+++.+
T Consensus 458 ~e~e-ian~LaDAEyLy---sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 458 SEEE-IANFLADAEYLY---SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cHHH-HHHHHHHHHHHH---hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4454 888999999999 79999999988888999999 899999999999999999999998877
No 363
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.12 E-value=0.47 Score=46.74 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=48.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
.+.+.++++.|.+.|.+++.+ .|....-|+.+|....+.|+++.|...|++.+++||.+.-
T Consensus 4 ~~~~~~D~~aaaely~qal~l-----ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-----APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-----CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 456778888888888888887 4556777888888888888888888888888888887643
No 364
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=1.1 Score=45.48 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
...+..|+=.++...++++.|+.+..+.|.++|.++..+.-+|-+|.++|.+.-|+.|++..++.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 45667778889999999999999999999999999999999999999999999999999998777
No 365
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.90 E-value=21 Score=39.19 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCcHHHHHH-
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE---PSCIQALDT- 321 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld---P~~~~A~~~- 321 (580)
...|.-+|.++++.||-....+.|+.... +.....+..+.-+|.++..+|+..++.....-++.+. |+.+--++.
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~ 528 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSS 528 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHH
Confidence 34488999999999999999999996311 1122345556678899999999999998888887763 444333332
Q ss_pred --HHHHHHhcCC
Q 008039 322 --RALLLETIRC 331 (580)
Q Consensus 322 --ra~~~~~lg~ 331 (580)
+-.+|...|+
T Consensus 529 si~~~L~~a~g~ 540 (629)
T KOG2300|consen 529 SILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHhCc
Confidence 2345555555
No 366
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.63 E-value=5.1 Score=41.06 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
|.+=+....++++- ....++..++..+...|+++.++..+++.+.++|-+.++|.++-.+|...|+...|+..
T Consensus 137 f~~WV~~~R~~l~e-------~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~ 209 (280)
T COG3629 137 FDEWVLEQRRALEE-------LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRA 209 (280)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHH
Confidence 55555555555552 25678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
|+++.++
T Consensus 210 y~~l~~~ 216 (280)
T COG3629 210 YRQLKKT 216 (280)
T ss_pred HHHHHHH
Confidence 9999876
No 367
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.59 E-value=20 Score=34.27 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
.+.+..|.+....|+...|+..|..+-.-.+ .|....-..-+
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~------------------------------------~P~~~rd~ARl-- 136 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTS------------------------------------IPQIGRDLARL-- 136 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCC------------------------------------CcchhhHHHHH--
Confidence 3556678899999999999999997543210 02111111111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
..+-.++..|-|++-....+.. . .+..|+...+.--+|.+-.+.|++.+|...|..... |.+-+...
T Consensus 137 --------raa~lLvD~gsy~dV~srvepL-a---~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprni 203 (221)
T COG4649 137 --------RAAYLLVDNGSYDDVSSRVEPL-A---GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNI 203 (221)
T ss_pred --------HHHHHHhccccHHHHHHHhhhc-c---CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHH
Confidence 2277889999999876544432 2 223677888888999999999999999999999665 88888889
Q ss_pred HHHHHHHHhc
Q 008039 320 DTRALLLETI 329 (580)
Q Consensus 320 ~~ra~~~~~l 329 (580)
.+|+++.+.+
T Consensus 204 rqRAq~mldl 213 (221)
T COG4649 204 RQRAQIMLDL 213 (221)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 368
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.22 E-value=1.1 Score=37.82 Aligned_cols=45 Identities=24% Similarity=0.149 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 300 ESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 300 eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
..+..+.++++.+|++..+.+.+|..+...|++++|+..|-.+++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999998888743
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.09 E-value=1.7 Score=36.73 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhcC----C-----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 290 FAYRSSGRIAESIADCNKTLALE----P-----SCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 290 ~a~~~lg~~~eAl~~~~~Al~ld----P-----~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.-..+.|+|.+|++.+.+.+..- . ...-++.++|.++...|++++|+..++.++.+.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567899999988887777552 1 235688999999999999999999999999984
No 370
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=88.91 E-value=4 Score=42.52 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++.-..+|+.+.++.+|...+..+...+-+ +-++|.......+.
T Consensus 171 ~llESK~y~~l~Nl~KakasLTsART~Ana--------------------------------iYcpPqlQa~lDLq---- 214 (411)
T KOG1463|consen 171 HLLESKAYHALRNLPKAKASLTSARTTANA--------------------------------IYCPPQLQATLDLQ---- 214 (411)
T ss_pred hhhhhHHHHHHhcchhHHHHHHHHHHhhcc--------------------------------cccCHHHHHHHHHh----
Confidence 344578899999999999988877654211 11234333333322
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc-ccHHHHHHHHHHHHHcCChHH--HHHHHHHHHhcCCCcHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG-FLAECYMHRAFAYRSSGRIAE--SIADCNKTLALEPSCIQA 318 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~-~~a~~~~nra~a~~~lg~~~e--Al~~~~~Al~ldP~~~~A 318 (580)
.|..+....+|..|..+|-+|.+.-+....+ .-...+-.+=.|-..++..++ ++-....+++.+.....|
T Consensus 215 -------SGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A 287 (411)
T KOG1463|consen 215 -------SGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA 287 (411)
T ss_pred -------ccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence 2777777899999999999998852221111 122333344455566666665 555666788888889999
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHH
Q 008039 319 LDTRALLLET--IRCLPDCLHDLEHL 342 (580)
Q Consensus 319 ~~~ra~~~~~--lg~~~eAi~~~~~a 342 (580)
....|.++.. +.+|+.|+.+|..=
T Consensus 288 mkavAeA~~nRSLkdF~~AL~~yk~e 313 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALADYKKE 313 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHH
Confidence 9999999864 45566666666654
No 371
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.85 E-value=0.5 Score=46.53 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=52.2
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 291 AYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 291 a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
...+.++.+.|.+.|++++++-|.+...|+++|....+.|+++.|...|++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44567899999999999999999999999999999999999999999999998884
No 372
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=0.46 Score=45.22 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=49.1
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSS 468 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~ 468 (580)
.+.|.+||+.......+|+++|+++.-.+|||+...-..+ .+--..+.+.++.|+++|+.
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~-------------~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLK-------------LEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCC-------------HHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999986553322 12235667888999999984
No 373
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=88.58 E-value=2.3 Score=43.64 Aligned_cols=89 Identities=10% Similarity=-0.074 Sum_probs=70.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS-SGRIAESIADCNKTLALEPSCIQALDTRALLLETIR 330 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg 330 (580)
...+.+..+.|-..|.+|+.. ......+|...|..-.. .++.+-|...|+.+++.-|.+...|.....-+..++
T Consensus 10 ~~~r~~g~~~aR~vF~~a~~~-----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 10 FMRRTEGIEAARKVFKRARKD-----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhCChHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence 333444489999999999863 33467888888888666 556666999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 008039 331 CLPDCLHDLEHLKLL 345 (580)
Q Consensus 331 ~~~eAi~~~~~al~l 345 (580)
+.+.|...|++++..
T Consensus 85 d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 85 DINNARALFERAISS 99 (280)
T ss_dssp -HHHHHHHHHHHCCT
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999999543
No 374
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.46 E-value=1.1 Score=45.87 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+-.+.+.-..+.|+.+.|...|..|++++|++++++...|+.....++.-+|-.+|-+|+.+
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 344455556678899999999999999999999999999999999999999999999999877
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.21 E-value=2.6 Score=34.53 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHH---HHHHHHHHccChHHHHHHHHh
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALE---LKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~---~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.....|+.+..|+ ..++..+|+..+.++|+..++.+.-+. .+..+|...|+|++.++.-..
T Consensus 5 ~ak~~ie~GlkLY---~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 5 QAKQQIEKGLKLY---HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHHh---ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888 788899999999999999999886544 467889999999999986444
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=88.16 E-value=21 Score=37.33 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCC
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 120 (580)
+..+=+..-..||+++|.++.+|.++|.--. --.-+|...++++++..+..-. ++.+. ....+.
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr---------~sqq~-----qh~~~~ 262 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYR---------QSQQC-----QHQSPQ 262 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHh---------hHHHH-----hhhccc
Confidence 3445566678899999999999998876322 2345666777776643222100 00000 000000
Q ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhccc
Q 008039 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISL 200 (580)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~ 200 (580)
+ .+..+...+...+..-.|+.|..++|+..+|++.++...+--
T Consensus 263 ---------~-----------------da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~----------- 305 (556)
T KOG3807|consen 263 ---------H-----------------EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF----------- 305 (556)
T ss_pred ---------h-----------------hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----------
Confidence 0 001111222333444568899999999999999988754321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhccC
Q 008039 201 SDDSFPFSKFPVSNNHQTPPATPPRTMTESES---VSQLLSHIKLLLRRRTAAIAALD---AGLYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 201 ~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~---~~~ll~~~k~~~~~k~~G~~~~~---~g~y~eAi~~y~~AL~~~~ 274 (580)
|-..- -.+++..+-++..+-+--+.+.+ ......|.-+|+.||--..
T Consensus 306 ---------------------------pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~R 358 (556)
T KOG3807|consen 306 ---------------------------PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTR 358 (556)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHH
Confidence 10000 11222222233333222223322 2233456667776643211
Q ss_pred CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
.-...+.++.-..||..-.. -.|++...+|++.||.-++-+..+-
T Consensus 359 AVa~kFspd~asrRGLS~AE----~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 359 AVSEKFSPETASRRGLSTAE----INAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHhhcCchhhhhccccHHH----HHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 11122344455555554443 3588899999999999888766553
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.15 E-value=14 Score=38.74 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=89.6
Q ss_pred cchhhhHHHHHHHHHHHHHhhC---------hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 17 LSNRKIVDKYIRDARTLIATQE---------HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~---------~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
..||.-|+-||..+..--.... ..-.+.-+.+|++||+.+|++...+...=.+...+-.-++....+++++
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567777777766643221111 2335678899999999999999999988888888888888888888865
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHh---hhcccc---------
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAG---LCRNCE--------- 155 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~---l~~~~~--------- 155 (580)
...|.+. .+++......- ..|..|+++++.+.+..- |.....
T Consensus 93 ---~~~~~~~----------~LW~~yL~~~q-------------~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~ 146 (321)
T PF08424_consen 93 ---FKNPGSP----------ELWREYLDFRQ-------------SNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDL 146 (321)
T ss_pred ---HHCCCCh----------HHHHHHHHHHH-------------HHhccCcHHHHHHHHHHHHHHHHHhhccccccccch
Confidence 2222211 23333222211 113344555554433222 211100
Q ss_pred ----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008039 156 ----KEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 156 ----~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~ 189 (580)
......++.+...+...|-.|.|+..+|..++++
T Consensus 147 ~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 147 PELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 1122234455666788999999999999999885
No 378
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.39 E-value=14 Score=36.49 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-QALDTRAL 324 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-~A~~~ra~ 324 (580)
..=+..|++.|.++++..+. ...-....+++.+|..+.++|++++|+.++.++|...-... ..+..+|.
T Consensus 138 ~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 138 KRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 33367788888888875321 22233567889999999999999999999999997633222 24555544
No 379
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.25 E-value=9.1 Score=36.47 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|.-|+..|++++|++.|.++....+ .....+...+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-------------------------------------~~~~~id~~l~~- 79 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCT-------------------------------------SPGHKIDMCLNV- 79 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-------------------------------------CHHHHHHHHHHH-
Confidence 467799999999999999999998764310 001112222222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
-.+.+..++|.....+..++-.+.+. .+......+-..-|..++..++|..|...|-.++.
T Consensus 80 ---------irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 80 ---------IRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ---------HHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 55677889999999999998776322 11222344566678888899999999888876653
No 380
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.16 E-value=0.84 Score=31.99 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
.+|..+|.+.+..++|+.|+.||.++|.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999873
No 381
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.14 E-value=15 Score=40.45 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=44.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++.+|+++-|..+|.++=+. ..+...|.-.|+.+.=....+.|..-. + +.-.-.++..+
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~d~-------------~~L~lLy~~~g~~~~L~kl~~~a~~~~-~----~n~af~~~~~l 415 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAKDF-------------SGLLLLYSSTGDREKLSKLAKIAEERG-D----INIAFQAALLL 415 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT-H-------------HHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhhcCc-------------cccHHHHHHhCCHHHHHHHHHHHHHcc-C----HHHHHHHHHHc
Confidence 88999999999999999876553 334556666777544333333333222 1 11223456667
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
|++++.+..+.+.
T Consensus 416 gd~~~cv~lL~~~ 428 (443)
T PF04053_consen 416 GDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc
Confidence 8888877777666
No 382
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.48 E-value=0.94 Score=28.62 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
|..+.||.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999998875
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.46 E-value=41 Score=39.53 Aligned_cols=92 Identities=14% Similarity=0.006 Sum_probs=67.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCc--HHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----EPSC--IQALDTRA 323 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----dP~~--~~A~~~ra 323 (580)
|.+....|++++|+...+.++...+.+.......++...|.++.-.|+++.|+.+...+.++ +--+ ..+....+
T Consensus 465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s 544 (894)
T COG2909 465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77788889999999999999887544445557788889999999999999999888888877 3333 33445668
Q ss_pred HHHHhcC--ChhHHHHHHHH
Q 008039 324 LLLETIR--CLPDCLHDLEH 341 (580)
Q Consensus 324 ~~~~~lg--~~~eAi~~~~~ 341 (580)
.++...| .+.+....|..
T Consensus 545 ~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 545 EILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 8888888 34444444443
No 384
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.41 E-value=2.2 Score=43.21 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=60.0
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhh
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSL 90 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l 90 (580)
.++.++..+.......+- ..+++..|+...++.|.++|.++.-+.-+|-+|.++|-+.-|++++..++..|
T Consensus 175 ~~~~il~rll~~lk~~~~--~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 175 SNREILSRLLRNLKAALL--RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred cHHHHHHHHHHHHHHHHH--HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 456667777776665542 56789999999999999999999999999999999999999999999977444
No 385
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.20 E-value=4.9 Score=32.80 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
..+|.-+-..|+|++|+..|..++++.-..+.-+ +.++. ....+..++.+...+++.++..+
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~-~~n~~------~k~~ir~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAG-TLNDS------HLKTIQEKSNEYLDRAQALHQLV 71 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc-CCChH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444478999999999999998864332212 11221 12335667788888888888744
No 386
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.88 E-value=19 Score=43.91 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHH------HHH-HHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALS------LLD-AALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~------~~~-~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
.+++...+...+ .+|.+.+|.+ +++ .--.+.|.....|..+|..+-.++.+++|+...+++. . +.
T Consensus 932 a~~~~e~gq~~~---~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~-i--i~-- 1003 (1236)
T KOG1839|consen 932 AKDSPEQGQEAL---LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKAC-I--IS-- 1003 (1236)
T ss_pred hhhhhhhhhhhh---cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccce-e--ee--
Confidence 344445554444 3555555555 666 4555789999999999999999999999999888754 0 00
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
+| +++++ .......|-+++...|..+..
T Consensus 1004 ----------------eR----------------------~~g~d--------------s~~t~~~y~nlal~~f~~~~~ 1031 (1236)
T KOG1839|consen 1004 ----------------ER----------------------VLGKD--------------SPNTKLAYGNLALYEFAVKNL 1031 (1236)
T ss_pred ----------------ch----------------------hccCC--------------CHHHHHHhhHHHHHHHhccCc
Confidence 00 00000 011123577788888999999
Q ss_pred HHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRL 188 (580)
Q Consensus 176 eeAi~~l~~al~l 188 (580)
..|+..+.+++.+
T Consensus 1032 ~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1032 SGALKSLNRALKL 1044 (1236)
T ss_pred cchhhhHHHHHHh
Confidence 9999999998876
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.02 E-value=93 Score=35.61 Aligned_cols=95 Identities=9% Similarity=0.065 Sum_probs=69.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCC------CCCc---------------ccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRG------APQG---------------FLAECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~------~~~~---------------~~a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
|......|..+.|.+++.+++...+. ...+ ....+++..+.+.+-+|+|..|......+
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~ 387 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFM 387 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 66677777776777777777664211 0000 12456677888889999999998888877
Q ss_pred HhcC---C------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 309 LALE---P------SCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 309 l~ld---P------~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
.... | -.+..++..|..+...|+.+.|...|.+.+-
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~ 432 (608)
T PF10345_consen 388 RQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRF 432 (608)
T ss_pred HHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHH
Confidence 6552 2 2477899999999999999999999996653
No 388
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.00 E-value=7.3 Score=39.86 Aligned_cols=85 Identities=14% Similarity=-0.011 Sum_probs=66.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcc---CCCCCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc----CC---C-------
Q 008039 253 ALDAGLYSEAIRHFSKIVDGR---RGAPQGFLAECYMHRAFAYRSSG-RIAESIADCNKTLAL----EP---S------- 314 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~---~~~~~~~~a~~~~nra~a~~~lg-~~~eAl~~~~~Al~l----dP---~------- 314 (580)
+.++|+++.|..+|.++-.+. +|......+.++||.|......+ ++++|+..+++|+++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999986642 34333446789999999999999 999999999999887 22 1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
....+..++.+|...+.++....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 14567888999999998865444
No 389
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.91 E-value=15 Score=34.10 Aligned_cols=79 Identities=15% Similarity=-0.015 Sum_probs=61.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
.......++..++.......--+ .|....+-.--|..++..|+|.+|+..++....-.+..+-+--.++.|+..+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvL-----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVL-----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 44555588888887766655444 3446667777799999999999999999998888888888888888999888
Q ss_pred CChh
Q 008039 330 RCLP 333 (580)
Q Consensus 330 g~~~ 333 (580)
||.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8854
No 390
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.78 E-value=5.2 Score=40.95 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..++...|..|...|.+.+|+..|.+++.+||-+...+..+-.+|..+|+--.++..|++..+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 4556667899999999999999999999999999999999999999999999999999988665
No 391
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.37 E-value=52 Score=33.34 Aligned_cols=90 Identities=13% Similarity=-0.027 Sum_probs=67.3
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-------RIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-------~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|..+.. ..++.+|...|.++.....+ ....+.++++.+|..-. +...|+..+.++-... +..+
T Consensus 116 g~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~----~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a 189 (292)
T COG0790 116 GLMYANGRGVPLDLVKALKYYEKAAKLGNV----EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDA 189 (292)
T ss_pred HHHHhcCCCcccCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHH
Confidence 666655 44999999999999996311 01344778888887742 2336999999988875 8999
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 008039 319 LDTRALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 319 ~~~ra~~~~~----lg~~~eAi~~~~~al~l 345 (580)
.+.+|.+|.. -.++.+|+..|.++.+.
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 9999988865 45889999999999654
No 392
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.00 E-value=8.3 Score=30.43 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQ 386 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~ 386 (580)
+...|.-+-..|+|++|+..|..++++....++.. +++.|+ .-+..++.....++..++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~--~~~~~~------~~l~~k~~~yl~RAE~lk~ 67 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSE--SNPERR------QALRQKMKEYLERAEKLKE 67 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHS--TTHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC--CCHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 34455555678999999999999998876666555 244332 2245556666666666654
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.67 E-value=1e+02 Score=35.22 Aligned_cols=201 Identities=16% Similarity=0.105 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHh---cCCCc-HHHHHHHHHHHH-HccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 42 IASALSLLDAALA---LSPRL-ELALELKARSLL-YLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 42 ~~~Al~~~~~Al~---l~P~~-~~~~~~rA~~l~-~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
...||..+..++. +.|.. +.++...|.+|+ ....+++|...+.+++-.++. +
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~---------------------- 93 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-H---------------------- 93 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c----------------------
Confidence 4567778887773 44433 245666888888 689999999999986622111 0
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
+..|++ ....+.++.+++..+... |+..++++++....
T Consensus 94 ---------------------~~~d~k---------------~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~----- 131 (608)
T PF10345_consen 94 ---------------------RLTDLK---------------FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET----- 131 (608)
T ss_pred ---------------------chHHHH---------------HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-----
Confidence 011111 112456789999998888 99999998876311
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-C
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-G 275 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-~ 275 (580)
..+..+...++.+ +...++..+++..|++.++....+.. .
T Consensus 132 -------------------------------~~~~~w~~~frll--------~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 132 -------------------------------YGHSAWYYAFRLL--------KIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred -------------------------------cCchhHHHHHHHH--------HHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 0112222222221 12223333899999999999988732 1
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------CCcHHHHHHHHH--HHHhcCChhHHHHHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE----------PSCIQALDTRAL--LLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld----------P~~~~A~~~ra~--~~~~lg~~~eAi~~~~~al 343 (580)
.+......+..-.+.++...+..+++++.+++++..- +....+|+.+-. ++...|++..+...++...
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222233444555777888888899999998885432 223556555544 5556777778888888776
Q ss_pred HHH
Q 008039 344 LLY 346 (580)
Q Consensus 344 ~l~ 346 (580)
+..
T Consensus 253 ~~~ 255 (608)
T PF10345_consen 253 QFL 255 (608)
T ss_pred HHH
Confidence 663
No 394
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=80.70 E-value=23 Score=38.58 Aligned_cols=53 Identities=19% Similarity=0.100 Sum_probs=48.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 289 AFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 289 a~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
|.-++..|+|.++.-++.=..+++| .+.+|..+|-++....+|++|..++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4456789999999999999999999 9999999999999999999999999876
No 395
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.70 E-value=1.8 Score=27.27 Aligned_cols=22 Identities=18% Similarity=-0.189 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
+++.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 396
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.55 E-value=55 Score=31.33 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EPSCIQALDTRA 323 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP~~~~A~~~ra 323 (580)
....|......|+-..|+..|+++-.- -+.+....-.+...-+..++..|-|++-..-.+- |.- +|--..+.-.+|
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~mR~sArEALg 174 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNPMRHSAREALG 174 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCChhHHHHHHHHh
Confidence 344588999999999999999998773 3444444555666667888889999876554443 332 455566777788
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~a 342 (580)
-+-.+-|+|..|...|..+
T Consensus 175 lAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHhccchHHHHHHHHHH
Confidence 9999999999999999988
No 397
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.53 E-value=1.4e+02 Score=39.04 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 259 YSEAIRHFSKIVDGR--RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 259 y~eAi~~y~~AL~~~--~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
..+-|-.+.+++-.. +++-......+|.+.|..-.+.|+++-|-.+.-.|.+.. -++++..+|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 555566666654431 233345578999999999999999999999999998887 6889999999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 337 HDLEHLKLLY 346 (580)
Q Consensus 337 ~~~~~al~l~ 346 (580)
..++..++++
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999998875
No 398
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.94 E-value=17 Score=40.73 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
|-.||.+....|++.-|.++|.++..+
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcch
Confidence 556899999999999999999998765
No 399
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=77.33 E-value=31 Score=42.04 Aligned_cols=107 Identities=21% Similarity=0.101 Sum_probs=86.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHH
Q 008039 228 TESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIAD 304 (580)
Q Consensus 228 Pd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~ 304 (580)
|+...+...+ +..+.+.|++++|+..-.++.-+.+ ..+.+.....|.|++...+..++...|+..
T Consensus 970 ~~~~~~~~~L------------a~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~ 1037 (1236)
T KOG1839|consen 970 PEVASKYRSL------------AKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKS 1037 (1236)
T ss_pred hhHHHHHHHH------------HHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhh
Confidence 4555665555 6789999999999999888766532 133556788899999999999999999999
Q ss_pred HHHHHhc--------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 305 CNKTLAL--------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 305 ~~~Al~l--------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+.+++.+ .|.-.-...+++.++..+++++-|+..++.|..+.
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999876 45555667888999999999999999999998864
No 400
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.03 E-value=51 Score=38.01 Aligned_cols=84 Identities=12% Similarity=0.070 Sum_probs=60.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
+.-|...|+|+-|.+.|+++=... .--..|-+.|+|.+|.....+...- ..-...|...++-+...
T Consensus 772 adhyan~~dfe~ae~lf~e~~~~~-------------dai~my~k~~kw~da~kla~e~~~~-e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEADLFK-------------DAIDMYGKAGKWEDAFKLAEECHGP-EATISLYIAKAEDLDEH 837 (1636)
T ss_pred HHHhccchhHHHHHHHHHhcchhH-------------HHHHHHhccccHHHHHHHHHHhcCc-hhHHHHHHHhHHhHHhh
Confidence 566677889999998888764421 1124567889999988877765532 23356688889999999
Q ss_pred CChhHHHHHH------HHHHHHHH
Q 008039 330 RCLPDCLHDL------EHLKLLYN 347 (580)
Q Consensus 330 g~~~eAi~~~------~~al~l~~ 347 (580)
|+|.+|...| .+++++|.
T Consensus 838 gkf~eaeqlyiti~~p~~aiqmyd 861 (1636)
T KOG3616|consen 838 GKFAEAEQLYITIGEPDKAIQMYD 861 (1636)
T ss_pred cchhhhhheeEEccCchHHHHHHH
Confidence 9999998877 46777764
No 401
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=76.75 E-value=22 Score=38.25 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=74.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
=|..+|+.++|..|+.-|..++++.+.. ....+.+ .|..+++.....-+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg------~a~~k~~---------------------~~~~~di~~vaSfI---- 230 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKG------AALSKPF---------------------KASAEDISSVASFI---- 230 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhh------hhccCCC---------------------CCChhhHHHHHHHH----
Confidence 3678999999999999999999884320 0001111 12233332221110
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
......+|++.++.+-|+.+-.+.|.++ |....-+...|.|+..+.+|.+|-..+.-+.-
T Consensus 231 -etklv~CYL~~rkpdlALnh~hrsI~ln-----P~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 231 -ETKLVTCYLRMRKPDLALNHSHRSINLN-----PSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred -HHHHHHhhhhcCCCchHHHHHhhhhhcC-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112778999999999999999999983 33555677889999999999999887776654
No 402
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.40 E-value=10 Score=38.83 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=59.0
Q ss_pred cccccchhhhHHHHHHHH-HHHHHh-hChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 13 KHWWLSNRKIVDKYIRDA-RTLIAT-QEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
..|+...+....++.-.+ ..+++. ...|+++.++..+++.+.++|.+..+|...=.+|+..|+...|+..|++.-
T Consensus 138 ~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 138 DEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 468777777666643333 223211 135889999999999999999999999999999999999999999999854
No 403
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.11 E-value=7.8 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCChHHHHHH--HHHHHhcCCC
Q 008039 284 CYMHRAFAYRSSGRIAESIAD--CNKTLALEPS 314 (580)
Q Consensus 284 ~~~nra~a~~~lg~~~eAl~~--~~~Al~ldP~ 314 (580)
.++.+|..+...|++++|+.. |.-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345566666677777777776 3366666554
No 404
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=76.00 E-value=8.2 Score=31.53 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhh
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVA 389 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~ 389 (580)
+..+|.-+-..|+|++|+..|..+++..-..+...+ ++. ...-+..++.+...++..++..+.
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~--d~~------~k~~~r~ki~eY~~RAE~Lk~~l~ 71 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTK--DEA------KKKNLRQKISEYMDRAEAIKKRLD 71 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCC--CHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566889999999999999988765554442 221 122355667778888888876543
No 405
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=75.76 E-value=94 Score=35.48 Aligned_cols=77 Identities=14% Similarity=-0.029 Sum_probs=50.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
+.-+.+...+.-|.+.|.+.=++ -.+-..+...++|.+|....++--++- ...|+..|+-+.+.
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~-------------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDL-------------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccH-------------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhh
Confidence 44444555666666666654332 112455667888998888766643332 34677788888888
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
.+|+||...|-+|
T Consensus 818 DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKA 830 (1081)
T ss_pred hhHHHHHHHHHHh
Confidence 8999998888877
No 406
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.67 E-value=1e+02 Score=31.63 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhh
Q 008039 39 HSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSL 90 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l 90 (580)
..+.++|+..|.++|++.|.-. .++-..-.+.+.+++|++-++.|.+.+--+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI 95 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI 95 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 5689999999999999998654 466677889999999999999999866433
No 407
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.06 E-value=15 Score=29.86 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
-+..+|.-+-..|++.+|+..|+.++++.-..++.. |+.. ...-+..++.+...+++.++..+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~--pD~~------~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNY--PDSP------TRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhC--CChH------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555556688999999999999988854444332 2221 11224556777788887777643
No 408
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.68 E-value=12 Score=34.22 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHh-cCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALA-LSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~-l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
--+..++.|+......|..+-+.+++..+. -+| +...+++.+|-.+..+++|+.++..++.. |+..|++.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l---l~~e~~n~ 105 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL---LETEPNNR 105 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH---HhhCCCcH
Confidence 355777888877778999999999999996 555 34578888999999999999999999984 45555444
No 409
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.59 E-value=18 Score=29.40 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.++..+=+.|+|.+||.+|+++|++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3377777888888888888887775
No 410
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=72.35 E-value=72 Score=35.94 Aligned_cols=92 Identities=15% Similarity=-0.033 Sum_probs=74.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHH-HHHhcCCCcHHHHHHH------
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCN-KTLALEPSCIQALDTR------ 322 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~-~Al~ldP~~~~A~~~r------ 322 (580)
...+...++...++-....++.. .+.+..++.|++.+....|..-.++.+.. .+....|++......+
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSV-----NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL 148 (620)
T ss_pred HhhccccccchhHHHHHhhhHhc-----CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence 45566778888888889999987 34478899999999988887766666555 4899999998887777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+..+..+++..++....+++.++.
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh
Confidence 888888888888888888888874
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.30 E-value=1.1e+02 Score=32.83 Aligned_cols=136 Identities=13% Similarity=-0.015 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
.+..+..+|..++|..|...|....+- .|+... ...
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r--------------------------------------l~~~~~-~~~----- 169 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR--------------------------------------LPGREE-YQR----- 169 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--------------------------------------CCchhh-HHH-----
Confidence 345677889999999999999987641 022222 111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CcHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--SCIQAL 319 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--~~~~A~ 319 (580)
....-+|-.+...-+|.+|.+.++..+... ..-......+..+......+..+........... .++ ....-+
T Consensus 170 --~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~--~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~dL 244 (379)
T PF09670_consen 170 --YKDLCEGYDAWDRFDHKEALEYLEKLLKRD--KALNQEREGLKELVEVLKALESILSALEDKKQRQ-KKLYYALLADL 244 (379)
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHHh--hhhHhHHHHHHHHHHHHHHHHhhccchhhhhccc-cccHHHHHHHH
Confidence 222334788889999999999999988741 0000011222222222222222222222111111 001 112223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+.-|.-....|+|++|+.-+-+++++.
T Consensus 245 l~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 245 LANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344444457899999999999999985
No 412
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.84 E-value=10 Score=34.77 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChh
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~ 333 (580)
.....++...+..|+|.-|+..++.++..||++..+...++.+|..+|.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 344556666777788888888888888899999998888888887766533
No 413
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=71.04 E-value=13 Score=37.25 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=52.3
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
|+.+|.+|+.+ .|.....|+.+|..+...|+.-+|+=+|-+++...-.++.|.-++..++.+
T Consensus 1 A~~~Y~~A~~l-----~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL-----LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-----CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999998 455788999999999999999999999999998877778899999888877
No 414
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=70.70 E-value=17 Score=29.26 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
++..|.-.-..|+|++|+..|..++++.-..++..+ ++. ...-+..+..+...++..++..+
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~--~~~------~k~~~~~k~~eyl~RaE~LK~~l 70 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEK--NPK------SKESIRAKCTEYLDRAEKLKEYL 70 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556889999999999999998765554433 221 11234555667777777777644
No 415
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.76 E-value=76 Score=34.90 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
.|-.||......|+++-|..+|+++-.+
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 4567899999999999999999986544
No 416
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=69.48 E-value=94 Score=32.75 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=66.9
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHhcCCh
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP~~~~A~~~ra~~~~~lg~~ 332 (580)
..-+|..-...|.-...+. | .+.+-.||+.+..+..-...++...+....- =.+|...+--+|..+.++|+.
T Consensus 308 edtDW~~I~aLYdaL~~~a-p-----SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~ 381 (415)
T COG4941 308 EDTDWPAIDALYDALEQAA-P-----SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRV 381 (415)
T ss_pred CCCChHHHHHHHHHHHHhC-C-----CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCCh
Confidence 3457888888887776652 2 3456789999988888888888877765543 235677788899999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
+||-..|++++.|
T Consensus 382 ~eAr~aydrAi~L 394 (415)
T COG4941 382 EEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
No 417
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.42 E-value=1.2e+02 Score=35.93 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=98.2
Q ss_pred HHHHHHHccChHHHHHHHHhhhhhhhhcC-------CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccccc
Q 008039 66 KARSLLYLRRFKDVADMLQDYIPSLKMAN-------DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFS 138 (580)
Q Consensus 66 rA~~l~~l~r~~eAi~~~~~~l~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 138 (580)
++.-+...|.|+.|+.++.+-+......| -.+++..+.++...+. -.+.+-|...+.++....-+-.+.
T Consensus 912 L~adhvaAGsf~tA~~lL~dqvgvv~f~p~Kt~fl~iy~~sR~~l~~~~~~~----~~~~~~R~~se~~~~~~~P~v~~~ 987 (1202)
T KOG0292|consen 912 LAADHVAAGSFETAMRLLHDQVGVVNFGPLKTHFLKIYAGSRTYLRATPCLP----VSLYPVRNWSETSSKQGLPAVGFK 987 (1202)
T ss_pred chhhhhhcCchHHHHHHHHhhhcceecccHHhhhhhhccccceeccCCCCcc----cccccccccccchhhccCCccccc
Confidence 67778888999999999998664333333 1122211111110000 112233333333322222233345
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT 218 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~ 218 (580)
.+.+.+++..| --+...|++.+|++.|..++-..+. ..-
T Consensus 988 l~~l~~kl~~g-----------------y~ltt~gKf~eAie~Frsii~~i~l-------~vv----------------- 1026 (1202)
T KOG0292|consen 988 LSQLNKKLQKG-----------------YKLTTEGKFGEAIEKFRSIIYSIPL-------LVV----------------- 1026 (1202)
T ss_pred HHHHHHHHHHH-----------------HhhhccCcHHHHHHHHHHHHhheeE-------EEe-----------------
Confidence 66666666554 3467889999999999987643210 000
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH------HHHcCCHHHH--HHHHHHHHhccCCCCCcccHH-HHHHHH
Q 008039 219 PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA------ALDAGLYSEA--IRHFSKIVDGRRGAPQGFLAE-CYMHRA 289 (580)
Q Consensus 219 ~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~------~~~~g~y~eA--i~~y~~AL~~~~~~~~~~~a~-~~~nra 289 (580)
....+-..+.+++..+++.. -|.. -...+....+ +..|-.-..+ +|.... ++.---
T Consensus 1027 ------d~~~e~aea~~li~i~~eYi----~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~L-----qp~H~ilalrtA~ 1091 (1202)
T KOG0292|consen 1027 ------DSKEEEAEADELIKICREYI----VGLSVELERRKLKKPNLEQQLELAAYFTHCKL-----QPMHRILALRTAM 1091 (1202)
T ss_pred ------cchhhHHHHHHHHHHHHHHH----hhheeeeeecccCCchHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHH
Confidence 00012233333333321110 0100 0123334444 2223222333 232322 233334
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 290 FAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 290 ~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
.++++++++..|-..+.+.+++-|.-+.|-.
T Consensus 1092 n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1092 NVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 6788999999999999999999988776643
No 418
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=69.24 E-value=8.8 Score=40.32 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
+...++.+.|..|+..-..++.. .+.....|+.++..+..+.++++|+.+...+....|++....-.+..+-...
T Consensus 282 ~~~~lk~~~~~~a~~~~~~~~~~-----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 282 AAVGLKVKGRGGARFRTNEALRD-----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred HHhcccccCCCcceecccccccc-----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 66778889999999888888874 3346788999999999999999999999999999999877655444444333
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.31 E-value=72 Score=32.33 Aligned_cols=91 Identities=10% Similarity=-0.123 Sum_probs=45.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHhcCCCcHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI--------AESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~--------~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
+..+++.|++..|.+.-.-.|+.-.....+.+....-++..++...+.- ..|+.+. +.-.-.-.+++-|..
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~ 95 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHL 95 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHH
Confidence 3344555555555554443333211111222333344555555555432 2344444 222223367899999
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~ 341 (580)
.|..|.+.++|.+|...|-.
T Consensus 96 ~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 96 LAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhccHHHHHHHHHh
Confidence 99999999999999877743
No 420
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.08 E-value=78 Score=32.27 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=56.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-RIAESIADCNKTLALEPSCIQALDTRALLLETIR 330 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg 330 (580)
++++..+-..|+..-..+|.++ |-+.++|..|=.|+..++ +..+=+++.++.++-+|.+.+.|..|-.+...+|
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lN-----pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLN-----PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhC-----cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 3445666777888888888872 335566666666655554 4556677777777777777777777777777777
Q ss_pred Chh-HHHHHHHHHH
Q 008039 331 CLP-DCLHDLEHLK 343 (580)
Q Consensus 331 ~~~-eAi~~~~~al 343 (580)
++. .-++..+.++
T Consensus 127 d~s~rELef~~~~l 140 (318)
T KOG0530|consen 127 DPSFRELEFTKLML 140 (318)
T ss_pred CcccchHHHHHHHH
Confidence 665 4444444443
No 421
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=65.82 E-value=28 Score=41.78 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=73.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc----C---ChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS----G---RIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l----g---~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
.+++...+.|+.|+..|.+.-.-- |. ...-..+.+..|.+.+.. | .+++|+..|++ |.-.|.-+--|...
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESF-PG-RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcC-CC-cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhH
Confidence 466778899999999999987742 22 233457788888887753 2 47778888877 44467888889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|-+|..+|+|+|-+.+|.-+++-|
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhc
Confidence 999999999999999999998775
No 422
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.75 E-value=42 Score=32.74 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhcCChhH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS----CIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~----~~~A~~~ra~~~~~lg~~~e 334 (580)
-++|...|-++-.- +.-..+.+.+.+|.-|. .-+.+.++..+.++|++.+. +++.+..++.++..+|+++.
T Consensus 122 d~~A~~~fL~~E~~----~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 122 DQEALRRFLQLEGT----PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred cHHHHHHHHHHcCC----CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 36666666554332 23346888888888777 46778999999999998543 58999999999999999998
Q ss_pred HH
Q 008039 335 CL 336 (580)
Q Consensus 335 Ai 336 (580)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 84
No 423
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=64.62 E-value=12 Score=37.67 Aligned_cols=43 Identities=16% Similarity=-0.035 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 301 SIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 301 Al~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
|+.+|.+|+.+.|++...|..+|.+....|+.=+|+-.|-|++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999986
No 424
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.77 E-value=11 Score=40.75 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 285 YMHRAFAYRSSGRIAESIADCNKTLALE---------PSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 285 ~~nra~a~~~lg~~~eAl~~~~~Al~ld---------P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+..++.-+|+|..|+...+. |.++ +-++..+|..|-+|+.+++|.+|++.|..++-.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889999999987665 3332 335677899999999999999999999998765
No 425
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.72 E-value=1.9e+02 Score=30.00 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++.-..+|....+..++...+..+..++- +++ ++|....-..++
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~An------s~Y--------------------------CPpqlqa~lDL~---- 211 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLAN------SAY--------------------------CPPQLQAQLDLL---- 211 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhh------ccC--------------------------CCHHHHHHHHHh----
Confidence 45557889999999999888887776531 111 123222222221
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHH-----HHHHHHHHHHcCChHHHHH--HHHHHHh-cCC
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAEC-----YMHRAFAYRSSGRIAESIA--DCNKTLA-LEP 313 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~-----~~nra~a~~~lg~~~eAl~--~~~~Al~-ldP 313 (580)
.|.......+|..|..+|-++++.- ..-.....+ |.-+..+ .+++.++--. --..+++ .+.
T Consensus 212 -------sGIlhcdd~dyktA~SYF~Ea~Egf--t~l~~d~kAc~sLkYmlLSkI--MlN~~~evk~vl~~K~t~~~y~~ 280 (421)
T COG5159 212 -------SGILHCDDRDYKTASSYFIEALEGF--TLLKMDVKACVSLKYMLLSKI--MLNRREEVKAVLRNKNTLKHYDD 280 (421)
T ss_pred -------ccceeeccccchhHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHH--HHhhHHHHHHHHccchhHhhhhh
Confidence 2777788899999999999998841 111111111 2222222 3344443222 2233444 566
Q ss_pred CcHHHHHHHHHHHH--hcCChhHHHHHHHHH
Q 008039 314 SCIQALDTRALLLE--TIRCLPDCLHDLEHL 342 (580)
Q Consensus 314 ~~~~A~~~ra~~~~--~lg~~~eAi~~~~~a 342 (580)
..+.+....+++|. .+.+|..|+..|..-
T Consensus 281 r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 281 RMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred hhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 67788888888775 355666777666654
No 426
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=63.70 E-value=16 Score=42.05 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=65.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
-+.+...|+|..++.-..-++.. .|....+++.|+.+|..+++++-|+++..-...++|.++.+-....+++..+
T Consensus 100 ~~m~~~l~~~~~~~~E~~la~~~-----~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 100 CYMQLGLGEYPKAIPECELALES-----QPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HHhhcCccchhhhcCchhhhhhc-----cchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 56667889999999999888885 5667788999999999999999999998888899999977766555555544
Q ss_pred CChhHHH
Q 008039 330 RCLPDCL 336 (580)
Q Consensus 330 g~~~eAi 336 (580)
..++-+.
T Consensus 175 ~~~d~~s 181 (748)
T KOG4151|consen 175 ELKDLAS 181 (748)
T ss_pred hhcCCcc
Confidence 4444443
No 427
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.64 E-value=33 Score=27.94 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=17.5
Q ss_pred HhcCChhHHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l~ 346 (580)
-..|+|++|+..|..+++++
T Consensus 17 D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHH
Confidence 36799999999999999986
No 428
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.51 E-value=33 Score=27.53 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQ 386 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~ 386 (580)
...|.-+-..|++++|+..|..+++.....+...+ ++. ....+..+..+...++..++.
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~--~~~------~~~~~~~k~~eyl~raE~lk~ 70 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEYLLEGIKVES--DSK------RREAVKAKAAEYLDRAEEIKK 70 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCC--CHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33444455689999999999999998755554332 221 112244556666677766665
No 429
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=63.47 E-value=95 Score=33.37 Aligned_cols=99 Identities=19% Similarity=0.052 Sum_probs=65.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH--cCChHHHHHHHHHHH-----------------
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS--SGRIAESIADCNKTL----------------- 309 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~--lg~~~eAl~~~~~Al----------------- 309 (580)
.+..+|+.++|..|...|..++....+.........|.+++.+|.. .-++++|...+++.+
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~~ 215 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELED 215 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHHH
Confidence 4778999999999999999999852111122346777888888876 456788888887211
Q ss_pred ------hcCCCc------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 310 ------ALEPSC------------------IQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 310 ------~ldP~~------------------~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
.+-|.. ..-++.=|..-...|+|++|+.-+-+++++..
T Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~ 277 (380)
T TIGR02710 216 VIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIV 277 (380)
T ss_pred HHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 011110 01111123334478999999999999998864
No 430
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.28 E-value=2.5e+02 Score=31.40 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC----cHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHH
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLAL---EPS----CIQALDTRALLLETIRC-LPDCLHDLEHLKLL 345 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~l---dP~----~~~A~~~ra~~~~~lg~-~~eAi~~~~~al~l 345 (580)
.-++-+|.++..+|+...|...+..+++- .-. .+-|+|.+|.++..++. +.++...+.+|.+.
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 34556799999999999999999988832 111 37899999999999999 99999999999665
No 431
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=62.87 E-value=25 Score=42.17 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
..|.+|+..|++.-.. +..+-=|...|.+|..+|+|.+=++.+.-|++-.|+++..-..+-.+-
T Consensus 533 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (932)
T PRK13184 533 RDFTQALSEFSYLHGG------VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV 596 (932)
T ss_pred HHHHHHHHHHHHhcCC------CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 5688999888876553 224556889999999999999999999999999999977554444433
No 432
>PF12854 PPR_1: PPR repeat
Probab=62.58 E-value=15 Score=24.67 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
..|..|-..|++.|++++|+++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4577788899999999999999875
No 433
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=62.55 E-value=26 Score=28.36 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
+..|.-.-..|+|++|+..|..+++..-..+...+ ++. ...-+..++.+...++..++..+
T Consensus 10 v~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~--~~~------~k~~lr~k~~eyl~RAE~LK~~l 70 (75)
T cd02684 10 VVQAVKKDQRGDAAAALSLYCSALQYFVPALHYET--DAQ------RKEALRQKVLQYVSRAEELKALI 70 (75)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455789999999999999998765554432 221 11235556677777777777643
No 434
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=62.51 E-value=38 Score=27.09 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
...|.-.-..|+|++|+..|..+++..-..+...+ ++. ....+..++.....++..++..+
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~--~~~------~k~~l~~k~~~yl~RaE~Lk~~l 70 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALDYLLQALKAEK--EPK------LRKLLRKKVKEYLDRAEFLKELL 70 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455669999999999999998765553332 221 11234555667777777777533
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.45 E-value=32 Score=36.91 Aligned_cols=93 Identities=11% Similarity=0.020 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---C-----CcHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE---P-----SCIQAL 319 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld---P-----~~~~A~ 319 (580)
+-|.-|...|+++.|++.|.++-+++-. .......+.|.-.+-.-+|+|..-..+-.+|..-- . -.++..
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs--~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTS--AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcc--hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 4488899999999999999998776421 23356778888888899999999888888887651 0 113344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
..-|.+++.+++|..|...|-.+
T Consensus 233 C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 233 CAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 55566777778999998888665
No 436
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.42 E-value=19 Score=28.29 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.+-..|..+=+.|+|++|+.+|.++++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344477777889999999999988875
No 437
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=62.10 E-value=45 Score=27.40 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 297 RIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 297 ~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
-|+.|....++||..| ..|+.++|+..|++++...
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHHH
Confidence 3566666666666665 5589999999999998764
No 438
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=61.85 E-value=1.2e+02 Score=34.18 Aligned_cols=79 Identities=22% Similarity=0.058 Sum_probs=55.3
Q ss_pred HHHHHHcCCHHHHHHHHHH-HHhccCCCCCcccHHHHHH------HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSK-IVDGRRGAPQGFLAECYMH------RAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~-AL~~~~~~~~~~~a~~~~n------ra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
|.++...|..-.++..+.. +... .+.+...... +|..+..+|+..++..+..++..+.|.++.....+
T Consensus 108 ~~ale~~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 108 AAALELDGLQFLALADISEIAEWL-----SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhc-----CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 5555556766666666665 5554 2224444444 48888899999999999999999999998777666
Q ss_pred HHHHHhcCChh
Q 008039 323 ALLLETIRCLP 333 (580)
Q Consensus 323 a~~~~~lg~~~ 333 (580)
.....+..++.
T Consensus 183 ~~~r~~~cs~~ 193 (620)
T COG3914 183 MTARQEQCSWP 193 (620)
T ss_pred HHHHHHhccch
Confidence 66655555553
No 439
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=61.60 E-value=20 Score=32.27 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=28.0
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCch
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFT 433 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~ 433 (580)
.-..||+|....+.++|.+.|.+|-..-+|+++++|.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY 95 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY 95 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH
Confidence 4568999999999999999999999999999988765
No 440
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.18 E-value=14 Score=26.78 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 163 LVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 163 ~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
+.|+.+|..+|+.+.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4689999999999999999998873
No 441
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=60.11 E-value=23 Score=28.71 Aligned_cols=24 Identities=8% Similarity=-0.252 Sum_probs=18.7
Q ss_pred HhcCChhHHHHHHHHHHHHHHHhh
Q 008039 327 ETIRCLPDCLHDLEHLKLLYNAIL 350 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l~~~~l 350 (580)
-..|+|++|+..|..++++.-..+
T Consensus 17 d~~~~y~eA~~~Y~~~i~~~~~~~ 40 (75)
T cd02677 17 EEEGDYEAAFEFYRAGVDLLLKGV 40 (75)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHh
Confidence 344999999999999998864433
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.78 E-value=32 Score=34.53 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc-CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGR-RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~-~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
+.|..++..|+|++|+..|+.+...- ...-......++..+..|+..+|+.++.+..+-+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33667777777777777777664431 01112234556666667777777776666655444
No 443
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.38 E-value=15 Score=26.59 Aligned_cols=25 Identities=16% Similarity=-0.101 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
.+.+|.+|..+|+++.|...++.++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 3678999999999999999999996
No 444
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.34 E-value=37 Score=33.10 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=42.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHH
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESI 302 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl 302 (580)
.++-..+-.+++..|.++|++..+. ...++.++..++.+|.++|+++.|-
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4556899999999999999985443 4679999999999999999999873
No 445
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.89 E-value=20 Score=29.22 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
+|..+=+.|+|++|+.+|.++|+.
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 378888889999999999888885
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.45 E-value=1.7e+02 Score=31.49 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=50.8
Q ss_pred cccccchhhhH--HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc-CCCcH-HHHHH--HHHHHHHccChHHHHHHHHhh
Q 008039 13 KHWWLSNRKIV--DKYIRDARTLIATQEHSEIASALSLLDAALAL-SPRLE-LALEL--KARSLLYLRRFKDVADMLQDY 86 (580)
Q Consensus 13 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l-~P~~~-~~~~~--rA~~l~~l~r~~eAi~~~~~~ 86 (580)
+.+...||-.+ ...+..++.++ ..++|..|...|+..+.. .++.. ..+.. +|--++..-+|++|.+.++++
T Consensus 119 ~l~~~~~p~~~~~~~~~~~a~~l~---n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 119 RLRELENPYEVFGDREWRRAKELF---NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34455666544 45778888888 789999999999999984 55443 23333 444555677889999988885
Q ss_pred h
Q 008039 87 I 87 (580)
Q Consensus 87 l 87 (580)
+
T Consensus 196 ~ 196 (379)
T PF09670_consen 196 L 196 (379)
T ss_pred H
Confidence 4
No 447
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.62 E-value=3.2e+02 Score=33.27 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
++.-|.++|..+..+|+|..|+..-++|
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3556778999999999999999988887
No 448
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=57.49 E-value=2.3e+02 Score=29.09 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CC------------
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EP------------ 313 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP------------ 313 (580)
.-+..+.+.|+|+-|...+.++.... +......+.+.+..+..+...|+..+|+......+.. ..
T Consensus 151 ~~a~~aRk~g~~~~A~~~l~~~~~~~-~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF02259_consen 151 KFAKLARKAGNFQLALSALNRLFQLN-PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKS 229 (352)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHhccC-CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhh
Confidence 34788899999999999999998863 2222335677888899999999999999998888871 10
Q ss_pred --------------------CcHHHHHHHHHHHHhc------CChhHHHHHHHHHHHH
Q 008039 314 --------------------SCIQALDTRALLLETI------RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 314 --------------------~~~~A~~~ra~~~~~l------g~~~eAi~~~~~al~l 345 (580)
...++++.+|.-...+ +.+++++..|+.++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~ 287 (352)
T PF02259_consen 230 GLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL 287 (352)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh
Confidence 1145677777777777 8888888888888777
No 449
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.91 E-value=2.3e+02 Score=30.73 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc-CCCCCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CC---cHH---H
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGR-RGAPQGF-LAECYMHRAFAYRSSGRIAESIADCNKTLALE---PS---CIQ---A 318 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~-~~~~~~~-~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld---P~---~~~---A 318 (580)
+..+...|.|.+|...+-+..... +....++ .+.++-..|.|| ..+..+ |. .-+ -
T Consensus 307 ~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~~~~~~~~~r~RK~af~ 372 (414)
T PF12739_consen 307 AELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRSNRPSPGLTRFRKYAFH 372 (414)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------cccccCCCCccchhhHHHHHH
Confidence 455667888888887777666531 0100111 344555566666 112221 11 112 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+..-|.-|...|....|+.+|..++.+|
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3445789999999999999999999996
No 450
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.45 E-value=23 Score=22.32 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARS 69 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~ 69 (580)
|+++.|..+|++++...|.+...|..-+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999999998775543
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.76 E-value=12 Score=40.50 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=43.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCC----CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRG----APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~----~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
...+.-.|||..|++...-. ++... .-.+-...++|..|-||+.+++|.+|++.|...|-
T Consensus 129 lRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999876532 21100 01223567899999999999999999999999874
No 452
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.31 E-value=25 Score=28.65 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
+-..+..+=+.|+|++|+.+|..+|+.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334478888899999999999999885
No 453
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.09 E-value=57 Score=35.86 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=68.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
+.+.-..|+|+.+......+-.+. .......-.+-....++|+|++|.....-.|.-.-..++.+.--|..-..+
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~-----~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l 404 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKII-----GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADAL 404 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhh-----cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHH
Confidence 556778899999988887654431 112334445566778999999999988888876666777666666667788
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|-+|++...+++++.+
T Consensus 405 ~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 405 QLFDKSYHYWKRVLLL 420 (831)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 9999999999999777
No 454
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.54 E-value=1.7e+02 Score=33.32 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 231 ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 231 ~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
..+..+........+.+..|..+...|++..|.++|.++-.+
T Consensus 654 ~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 654 DIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 334444444445556667799999999999999999988775
No 455
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.52 E-value=20 Score=34.03 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 413 LERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 413 i~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+...|+.+...+|||+....... .+..+.+.+..++.||.+|.+++.
T Consensus 20 l~~~~~~~~~~~~~dr~~~~~~~---------------~~~~~l~~~~~~~~a~~tLk~~l~ 66 (174)
T COG1076 20 LKLQYRELQRAYHPDRFGKASEA---------------EQRKALQQSAEVNPAYQTLKDPLL 66 (174)
T ss_pred hhhhHHHHHHhhCcccccccchH---------------HHHHHHHHHHHhcchHHHHHHHHH
Confidence 44558999999999997665543 445678899999999998888774
No 456
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=52.30 E-value=2.9e+02 Score=28.69 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
.+...+.++ .++++.+.++.+++.+..+|.--..+.+-+.++..+| |+++.+..+.-+
T Consensus 102 ~~~~~~~~~---~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el 159 (301)
T TIGR03362 102 RVADYQELL---AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDEL 159 (301)
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 334444444 4678899999999999999999999999999999999 677776666544
No 457
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.22 E-value=1.3e+02 Score=29.94 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=17.4
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 008039 169 CCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l 188 (580)
++..|+++.|+.+..-+++.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEH 112 (230)
T ss_pred eeeccCHHHHHHHHHHHHHc
Confidence 58899999999999988864
No 458
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=51.15 E-value=1.7e+02 Score=27.13 Aligned_cols=135 Identities=14% Similarity=0.040 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh-hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH--HHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR-RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES--VSQLLS 238 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r-~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~--~~~ll~ 238 (580)
....+......|+.++|+..+.++..+...... ...+....... ...+. ...|-... ....+.
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~-----~~~~~---------~~iPI~~~~~v~d~~~ 70 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKIL-----PPAKD---------DLIPIDAEVIVIDDYV 70 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S-------SSSS----------EEEEEEEEEEE----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhcc-----ccCCC---------ceEEEeeEEEEeeccC
Confidence 345678888999999999999988765321111 11111000000 00000 00010000 011122
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG--APQGF-LAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~--~~~~~-~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
-..........++.+++.|+...|.+.+.-+-.-.+- ..-|. ......+++..++..|++++|-..+..++.
T Consensus 71 ~~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 71 PTPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp --HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 2334445556699999999999999988765221000 00011 244566889999999999999888887763
No 459
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.09 E-value=36 Score=38.55 Aligned_cols=64 Identities=8% Similarity=-0.069 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEP------SCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP------~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..++-|-|.-++++.+|..+++.|...+.--| .+.+....++-||..+.+.|.|++.++.|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 45677889999999999999999999997755 45788889999999999999999999999655
No 460
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=50.79 E-value=4.6e+02 Score=30.55 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATA---AFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~---~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
++..+|.-+..+-.+++|.++|..+-..... ..+.+ .| ++.+ .-.+..|+......-
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le-------~f--------~~LE----~la~~Lpe~s~llp~- 857 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLE-------LF--------GELE----VLARTLPEDSELLPV- 857 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHH-------hh--------hhHH----HHHHhcCcccchHHH-
Confidence 5667899899999999999998876433110 00000 00 0000 000111333322222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
.|..+..-|--++|++.|-+.-. | .+.+ .....+++|.+|++...+ ..+ |.-..
T Consensus 858 -----------~a~mf~svGMC~qAV~a~Lr~s~---p-----kaAv-----~tCv~LnQW~~avelaq~-~~l-~qv~t 911 (1189)
T KOG2041|consen 858 -----------MADMFTSVGMCDQAVEAYLRRSL---P-----KAAV-----HTCVELNQWGEAVELAQR-FQL-PQVQT 911 (1189)
T ss_pred -----------HHHHHHhhchHHHHHHHHHhccC---c-----HHHH-----HHHHHHHHHHHHHHHHHh-ccc-hhHHH
Confidence 26677777888888777765432 1 1111 123455667777665443 222 22223
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
...+-+.-+...++.-+||+.++++
T Consensus 912 liak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 912 LIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHhhcchHHHHHHhhhc
Confidence 3334455566777888888888777
No 461
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.98 E-value=3.3e+02 Score=28.35 Aligned_cols=29 Identities=17% Similarity=-0.120 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHccC
Q 008039 47 SLLDAALALSPRLELALELKARSLLYLRR 75 (580)
Q Consensus 47 ~~~~~Al~l~P~~~~~~~~rA~~l~~l~r 75 (580)
..|++.+.-+|.+..+|.......-.+-.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~ 34 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFR 34 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcc
Confidence 46889999999999999887765555433
No 462
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.62 E-value=3.2e+02 Score=28.04 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIA-ESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~-eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
..+=++..++.++- .|.+..+|..|-.+...+|++. .=++.+..+|..|..+..||..|-.++...+.|+.-+.
T Consensus 94 L~~El~~l~eI~e~-----npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~ 168 (318)
T KOG0530|consen 94 LNKELEYLDEIIED-----NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA 168 (318)
T ss_pred HHHHHHHHHHHHHh-----CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 45556777788774 5668899999999999999988 88999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
...+.++.
T Consensus 169 y~~~Lle~ 176 (318)
T KOG0530|consen 169 YADELLEE 176 (318)
T ss_pred HHHHHHHH
Confidence 88888766
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.94 E-value=94 Score=31.09 Aligned_cols=61 Identities=10% Similarity=-0.044 Sum_probs=47.8
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC----cHHHHHHHHHHHHhcCChhHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALE--PS----CIQALDTRALLLETIRCLPDCLHDLE 340 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld--P~----~~~A~~~ra~~~~~lg~~~eAi~~~~ 340 (580)
....+...+|.-|+.+|+|++|+..++.+...- .. ....+..+..|...+|+.++.+...=
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 355677789999999999999999999996552 12 25667788889999999888776543
No 464
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=47.41 E-value=1.2e+02 Score=30.22 Aligned_cols=64 Identities=17% Similarity=0.053 Sum_probs=53.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
...+++.+...+||.....-++. +|.++....-+=..+.-.|+|..|+..|+-+-.++|++..-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVka-----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKA-----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 45678899999999999999986 44456666666677888999999999999999999998653
No 465
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.00 E-value=44 Score=26.91 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
+..+|...=..|+|++|+.+|..+++.
T Consensus 9 l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334477777888888888888888775
No 466
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.92 E-value=36 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=17.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
|...=..|+|++|+.+|..+|+.
T Consensus 13 A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHHH
Confidence 66666778888888888888875
No 467
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=46.49 E-value=45 Score=26.70 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
..|..+=+.|+|++|+.+|..+++.
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3477777788888888888888774
No 468
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.15 E-value=75 Score=32.51 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=46.7
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
.++....++|+..|.+++++ ++.....-..++-..-.+++++|+|++-+..|.+.|.
T Consensus 37 ~l~e~~p~~Al~sF~kVlel-EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLEL-EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccccCHHHHHHHHHHHHhc-ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 35566899999999999998 4654555567778888899999999999999998874
No 469
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.38 E-value=37 Score=35.90 Aligned_cols=63 Identities=11% Similarity=-0.050 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC---CCCcccHHHHHHHHHHHHHcCChHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG---APQGFLAECYMHRAFAYRSSGRIAESIAD 304 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~---~~~~~~a~~~~nra~a~~~lg~~~eAl~~ 304 (580)
.+..+...|+.++..++|+.|+..|..|..+.+. .....+...++..|.+++.++++...+-.
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556699999999999999999999987421 12334667888889999999988776543
No 470
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=43.90 E-value=52 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
..|...=+.|+|++|+.+|..+++.
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3477777789999999888888775
No 471
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=43.76 E-value=50 Score=26.75 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
..+|...=..|+|++|+.+|..+|+.
T Consensus 10 v~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 10 VVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33477777888999998888888875
No 472
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=46 Score=30.93 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=41.6
Q ss_pred CccchhhhhcccC--CCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRR--GCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~--~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
...+||.+.|... ...+..+..-|....-++|||+-...... ....|.+.-..+++||.+|.+
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~---------------~~d~a~eqSa~lnkAY~TLk~ 70 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAG---------------DTDQASEQSAELNKAYDTLKD 70 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccc---------------cchhHHHHHHHHHHHHHHHHh
Confidence 3567999998653 23334444357888889999984321110 113566777889999997654
Q ss_pred chhhH
Q 008039 472 NIMDE 476 (580)
Q Consensus 472 ~~~~~ 476 (580)
++.+
T Consensus 71 -pL~R 74 (168)
T KOG3192|consen 71 -PLAR 74 (168)
T ss_pred -HHHH
Confidence 4433
No 473
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.78 E-value=81 Score=27.25 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=43.2
Q ss_pred ccccchhh-hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Q 008039 14 HWWLSNRK-IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRR 75 (580)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r 75 (580)
+|+...++ +....+.+|...+ ..||+..|...+.++-+..+.....+..-|++-..+|+
T Consensus 49 ~~~~~rr~~ka~~al~~Gl~al---~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 49 RWRRRRRRRKAQRALSRGLIAL---AEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 55443333 5555677775555 58999999999999998888887778777777766653
No 474
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.60 E-value=64 Score=20.11 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 297 RIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 297 ~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+++.+...|++++...|.++..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555666666666666666666555443
No 475
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.26 E-value=4.3e+02 Score=27.46 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=66.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc-CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcHHHH--HH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGR-RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSCIQAL--DT 321 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~-~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~~~A~--~~ 321 (580)
...+++.|.|.+|+....-.+.-. .-++.+....+|..-..+|....+...+-..++.|-.+ -|....+- ..
T Consensus 132 i~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~ 211 (421)
T COG5159 132 IYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLL 211 (421)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 678899999999999887665421 01224556778888899999999888888777766433 24333333 33
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
-|..+..-.+|.-|-.+|-.+.+-
T Consensus 212 sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 212 SGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred ccceeeccccchhHHHHHHHHHhc
Confidence 366777778888888888777544
No 476
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=41.13 E-value=74 Score=21.85 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH--HHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLE--HLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~--~al~l 345 (580)
+.++.+|-.+...|++++|+..|+ -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 567889999999999999999955 55444
No 477
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=40.40 E-value=1.6e+02 Score=32.73 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCcHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR-IAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~-~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|.+--..|.++|.. +|.++.+|..-|.=.+..+. ++.|...+.++|+.+|++++.|.
T Consensus 121 ~~~v~ki~~~~l~~-----Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAK-----HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hhHHHHHHHHHHHh-----CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 66666677777775 45566666666655555554 66667777777777777766554
No 478
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.17 E-value=2.2e+02 Score=37.51 Aligned_cols=119 Identities=12% Similarity=-0.029 Sum_probs=78.4
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008039 153 NCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES 232 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~ 232 (580)
+.+.....-|+..+++....|.++.|-..+-+|.+.. .
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------------------------------------------~ 1701 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR------------------------------------------L 1701 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------------------------------------------c
Confidence 4445555668888999999999999988776655331 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC------CCcccHHHHHHHHHHHHHc-------CC--
Q 008039 233 VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA------PQGFLAECYMHRAFAYRSS-------GR-- 297 (580)
Q Consensus 233 ~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~------~~~~~a~~~~nra~a~~~l-------g~-- 297 (580)
... .-+.+..+...|+-..|+...++.++.+-|+ +.|........ +.+.++. |+
T Consensus 1702 ~~i----------~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~-~~~~L~~~~~~~es~n~~ 1770 (2382)
T KOG0890|consen 1702 PEI----------VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF-KKAKLKITKYLEESGNFE 1770 (2382)
T ss_pred chH----------HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh-hhHHHHHHHHHHHhcchh
Confidence 011 1233778899999999999999999764332 11222221111 1233333 33
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
-.+-+..|..+++++|.+.+.||.+|.
T Consensus 1771 s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1771 SKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred HHHHHHHHHHHHHHcccccCceeeHHH
Confidence 245678999999999999888888883
No 479
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=39.53 E-value=2.3e+02 Score=31.43 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=66.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.....|+...|-+....+|.- .|..+....-++.++..+|.|+.+..+..-+=.+-..-.++...+-.-+..+|+
T Consensus 298 k~~~~gd~~aas~~~~~~lr~-----~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRN-----QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHh-----CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 346789999999988888884 444566666789999999999999998876665555556777777778888999
Q ss_pred hhHHHHHHHHH
Q 008039 332 LPDCLHDLEHL 342 (580)
Q Consensus 332 ~~eAi~~~~~a 342 (580)
+++|...-+-.
T Consensus 373 ~~~a~s~a~~~ 383 (831)
T PRK15180 373 WREALSTAEMM 383 (831)
T ss_pred HHHHHHHHHHH
Confidence 99887654433
No 480
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=38.63 E-value=74 Score=20.61 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 301 SIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 301 Al~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
.+..+..+|..+|.+..+|..|-.++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46788899999999999998887776554
No 481
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.42 E-value=53 Score=34.83 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=51.1
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHccChHHHHH
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSP--------RLELALELKARSLLYLRRFKDVAD 81 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P--------~~~~~~~~rA~~l~~l~r~~eAi~ 81 (580)
.-.+.+.+++..|+..+ ..+|+..|...|..|.+++- .+..++++.|.+|+.+++++..+-
T Consensus 36 ~~~~~~e~lv~~G~~~~---~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRAL---CNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred hHHHHHHHHHHhhhHHH---hcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567888999998888 68999999999999998774 344678889999999999998875
No 482
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=37.03 E-value=2.7e+02 Score=23.99 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC
Q 008039 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 236 ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~ 297 (580)
...+-++..+....|...+-.|||..|.+...++-+. .+.....|..-+.+-..+||
T Consensus 52 ~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~-----~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 52 RRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL-----SDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHcCC
Confidence 3445566777778899999999999999999999774 12233344444555555553
No 483
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.39 E-value=65 Score=35.45 Aligned_cols=60 Identities=27% Similarity=0.254 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhh
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDY 86 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~ 86 (580)
+..++.++..+ ..|||.=+.+++++++-.+|.+..+..+.|.+|-+||--.|+.-.=.-+
T Consensus 453 drVl~la~ea~---~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~wRn~y 512 (655)
T COG2015 453 DRVLELAREAF---DKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESATWRNFY 512 (655)
T ss_pred HHHHHHHHHHH---hcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccchhhhhH
Confidence 44566666666 6899999999999999999999999999999999999877776543333
No 484
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=36.22 E-value=1.6e+02 Score=31.26 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=56.7
Q ss_pred chhhhHHHHHHHHHHHH-----HhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 18 SNRKIVDKYIRDARTLI-----ATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-----~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
++.+..++|+=.+...+ .....+.+-.|+.+++.++..+|.+........++|..+|-...|...|..
T Consensus 170 te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 170 TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56667778776664433 223457789999999999999999999999999999999999999999876
No 485
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.07 E-value=5.5e+02 Score=30.77 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----CCCCCcccHHHHHHHHHHHH----------H--cCChHHH--
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR-----RGAPQGFLAECYMHRAFAYR----------S--SGRIAES-- 301 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~-----~~~~~~~~a~~~~nra~a~~----------~--lg~~~eA-- 301 (580)
..+.+..++|-.+...|+|.+|+++|..+|-.. +.......+.-+...|.-|+ + .+....+
T Consensus 989 ~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~E 1068 (1202)
T KOG0292|consen 989 SQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLE 1068 (1202)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHH
Confidence 345556677999999999999999999987641 11111112223333343332 1 1233444
Q ss_pred HHHHHHHHhcCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 302 IADCNKTLALEPSC-IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 302 l~~~~~Al~ldP~~-~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..|=.-..|.|-+ +-++..--.++.++++|..|-..-.+.+++
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel 1113 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLEL 1113 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 33333445666655 445555557899999999999999999887
No 486
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=34.65 E-value=63 Score=20.07 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
|..+=.+|...|++++|...|++-.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45567889999999999999987653
No 487
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=34.63 E-value=6.8e+02 Score=27.78 Aligned_cols=208 Identities=12% Similarity=0.060 Sum_probs=113.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc--CCCCCCCCCCchhhHhHHHHHh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA--NDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
..+|-..|+.....++..+|. .....+.++-...+-++.-.+|++.+..|... -.++.+
T Consensus 314 ~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~---------------- 374 (660)
T COG5107 314 GISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESES---------------- 374 (660)
T ss_pred hccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhh----------------
Confidence 357888899888888888887 66677888888888888888888877554321 011111
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~ 195 (580)
++..|.+++. ++.-++.... ....+|..+-..-.+..-++.|..+|.++.+..
T Consensus 375 -----------~s~~D~N~e~-----~~Ell~kr~~-----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~------ 427 (660)
T COG5107 375 -----------ASKVDNNFEY-----SKELLLKRIN-----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG------ 427 (660)
T ss_pred -----------hccccCCccc-----cHHHHHHHHh-----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC------
Confidence 1112222222 1111222111 111233333344445555777888888776441
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+...+.++.. . -..++..|++.-|...|.-.+..
T Consensus 428 ---~~~h~vyi~~--------------------------A--------------~~E~~~~~d~~ta~~ifelGl~~--- 461 (660)
T COG5107 428 ---IVGHHVYIYC--------------------------A--------------FIEYYATGDRATAYNIFELGLLK--- 461 (660)
T ss_pred ---CCCcceeeeH--------------------------H--------------HHHHHhcCCcchHHHHHHHHHHh---
Confidence 1222222110 0 33567789999999999988875
Q ss_pred CCCcccHHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 276 APQGFLAECYMHR-AFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 276 ~~~~~~a~~~~nr-a~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+ +..+|.+. =.-+..+++-..|...|+.++.-=. +. .+-.+|.++=+|+--..++..++.|
T Consensus 462 --f~-d~~~y~~kyl~fLi~inde~naraLFetsv~r~~----~~-q~k~iy~kmi~YEs~~G~lN~v~sL 524 (660)
T COG5107 462 --FP-DSTLYKEKYLLFLIRINDEENARALFETSVERLE----KT-QLKRIYDKMIEYESMVGSLNNVYSL 524 (660)
T ss_pred --CC-CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH----Hh-hhhHHHHHHHHHHHhhcchHHHHhH
Confidence 23 23444443 3344567777778888887764311 11 2334444444444444444444333
No 488
>PF15469 Sec5: Exocyst complex component Sec5
Probab=34.58 E-value=4e+02 Score=25.08 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 232 SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 232 ~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.+..++.+.+-+-.+-..-..+.+.|+|+.++..|.++-.+
T Consensus 75 ~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 75 NALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 34445555555555556666778889999999999988876
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.47 E-value=1.2e+02 Score=32.17 Aligned_cols=63 Identities=22% Similarity=0.175 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 22 IVDKYIRDARTLIATQEHSE-IASALSLLDAALALSPR---LELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d-~~~Al~~~~~Al~l~P~---~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
.|++-+.++..|| ..|= .++.+..++..|.--|. .+.||..+|+++-..|-++++|.+|++||
T Consensus 101 kvn~tlsECl~Li---~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi 167 (353)
T PF15297_consen 101 KVNKTLSECLNLI---EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAI 167 (353)
T ss_pred HHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 5777888888888 4443 45778888888888884 56899999999999999999999999988
No 490
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=34.20 E-value=2.9e+02 Score=31.27 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=26.5
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 155 EKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 155 ~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
++.+.+.|..+|..|++.+++.+|+..+-.+-..
T Consensus 314 ~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 314 NNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp TT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678989999999999999999999887654
No 491
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.19 E-value=94 Score=30.90 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=51.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 290 FAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 290 ~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+++-++..++|.....-++.+|.+......+-++|.-.|+|+.|..-++-+-++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 35677889999999999999999999999999999999999999999999998777
No 492
>PF12854 PPR_1: PPR repeat
Probab=33.13 E-value=87 Score=20.87 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
+...|.-+-.+|.+.|+.++|+..+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456677777888888888888877664
No 493
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.80 E-value=4e+02 Score=32.85 Aligned_cols=144 Identities=14% Similarity=0.049 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 163 LVLGQACCHLGLMEDAMVLLQTGKRLATA--AFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 163 ~~LG~a~~~lG~~eeAi~~l~~al~l~~~--~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
+.+|.+|...|+.-+|+.+|..|..--.. ..++- +...++ ...+...+..+- ++.. +..++..
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~l---------v~~~~p-~~~sv~dG~t~s---~e~t-~lhYYlk- 988 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKL---------VYFLLP-KRFSVADGKTPS---EELT-ALHYYLK- 988 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHH---------HHHhcC-CCCchhcCCCCC---chHH-HHHHHHH-
Confidence 45899999999999999999988632100 00110 011111 122222221110 1111 2333322
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQ 317 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~ 317 (580)
+ -..+-..+--+++++.-.+||+.. +...|..+.++.+.=.-++.+|.|-+|.. ||--+|+. ..
T Consensus 989 --v------~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~----ai~~npdserrrd 1055 (1480)
T KOG4521|consen 989 --V------VRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYK----AILRNPDSERRRD 1055 (1480)
T ss_pred --H------HHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHH----HHHcCCcHHHHHH
Confidence 1 222334566788899999999964 44456677888888888889999987654 45556664 34
Q ss_pred HHHHHHHHHHhcCChhH
Q 008039 318 ALDTRALLLETIRCLPD 334 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~e 334 (580)
.+.++-.++.+-|+++.
T Consensus 1056 cLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHHHhccchHH
Confidence 56666677777777643
No 494
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.72 E-value=75 Score=33.14 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=50.6
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMH-RAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~n-ra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
..+.|-|.+--..|.+++.. +|.++.+|.. -+.-+...++++.+...+.++|+++|..+..|+.
T Consensus 117 ~~k~k~y~~~~nI~~~~l~k-----hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 117 VIKKKMYGEMKNIFAECLTK-----HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34455677777788899997 6778888875 3455677899999999999999999999887643
No 495
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=32.39 E-value=87 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=16.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
|...-+.|+|++|+.+|..+|+.
T Consensus 13 Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 13 ALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 56666667777777777777764
No 496
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.84 E-value=92 Score=19.62 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
|..+=.+|.+.|++++|+.+|....+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556789999999999999998653
No 497
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=31.61 E-value=1.3e+02 Score=34.31 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
...+...++|.+|...-++--+ +...+|+-.|+-+....+|++|-..|.+|
T Consensus 780 VqlHve~~~W~eAFalAe~hPe--------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPE--------FKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhheeecccchHhHhhhhhCcc--------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 4556677888888655443322 24456666666666666666665555443
No 498
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.54 E-value=4.4e+02 Score=28.62 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=63.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR--IAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~--~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
...+..-+++=+.....+|.. .|....+|+.|..++.+.+. |..=+..|+++++.||.+..+|..|-.+....
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~-----npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~ 158 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKV-----NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA 158 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH
Confidence 334445677788888888887 45578999999999998774 67889999999999999999987666555543
Q ss_pred CC----hhHHHHHHHHH
Q 008039 330 RC----LPDCLHDLEHL 342 (580)
Q Consensus 330 g~----~~eAi~~~~~a 342 (580)
.. ..+=+....++
T Consensus 159 ~~~~~~~~~El~ftt~~ 175 (421)
T KOG0529|consen 159 ERSRNLEKEELEFTTKL 175 (421)
T ss_pred hcccccchhHHHHHHHH
Confidence 33 34444555555
No 499
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.53 E-value=1.6e+02 Score=32.15 Aligned_cols=114 Identities=16% Similarity=0.108 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---cCC---CCCcccHHHHHHHHHHHHHcCCh---HHHHH---HHHHHHh-
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDG---RRG---APQGFLAECYMHRAFAYRSSGRI---AESIA---DCNKTLA- 310 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~---~~~---~~~~~~a~~~~nra~a~~~lg~~---~eAl~---~~~~Al~- 310 (580)
+-+.++|.++++...|.+|+.++-.|=+. +++ ......+.+-.-+-.||+.+.+. .+|.. -|.+.+.
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 45667799999999999999877655332 111 00111334444556788877754 23322 2222222
Q ss_pred -----------cC-CCc-HHH-----HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 008039 311 -----------LE-PSC-IQA-----LDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWK 361 (580)
Q Consensus 311 -----------ld-P~~-~~A-----~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~ 361 (580)
+. |.. .+| +..-|.+.+..|+-++|.+.|+.+... +..-+.++..|.
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~----l~elki~d~~ls 308 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK----LLELKINDETLS 308 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----HHHeeccchHHH
Confidence 11 111 233 344588999999999999999999765 333344555443
No 500
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=31.09 E-value=8.8e+02 Score=30.34 Aligned_cols=90 Identities=17% Similarity=0.119 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHhcc-CCCCCcccHHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHhcCCC-
Q 008039 257 GLYSEAIRHFSKIVDGR-RGAPQGFLAECYMHRAFAYRSSG--------------------RIAESIADCNKTLALEPS- 314 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~-~~~~~~~~a~~~~nra~a~~~lg--------------------~~~eAl~~~~~Al~ldP~- 314 (580)
..+++|+.+|.++.... ++.+.-...++....+..+..+. .-.++.....+++.+...
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~ 438 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD 438 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh
Confidence 34799999999997431 12222234455566666666666 677888888888876543
Q ss_pred -----cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 315 -----CIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 315 -----~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
-...|..+|.+|..+|-.-.+.-.++.++...
T Consensus 439 l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 439 LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 26778999999999999999988888887663
Done!