Query 008039
Match_columns 580
No_of_seqs 496 out of 3767
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y4t_A DNAJ homolog subfamily 100.0 1.3E-27 4.5E-32 254.2 33.2 298 26-475 146-443 (450)
2 2pl2_A Hypothetical conserved 99.9 1.2E-22 4E-27 197.6 21.5 196 23-342 5-211 (217)
3 2pzi_A Probable serine/threoni 99.9 1.7E-21 5.8E-26 221.8 22.1 250 37-427 402-662 (681)
4 2y4t_A DNAJ homolog subfamily 99.9 6E-20 2E-24 195.0 29.5 232 3-345 3-240 (450)
5 2h6f_A Protein farnesyltransfe 99.9 1.7E-20 5.7E-25 199.2 22.6 202 18-342 92-302 (382)
6 3ieg_A DNAJ homolog subfamily 99.9 1.7E-19 5.9E-24 183.8 29.2 212 27-345 124-335 (359)
7 3ieg_A DNAJ homolog subfamily 99.9 5.1E-19 1.8E-23 180.3 32.0 213 22-345 2-217 (359)
8 1w3b_A UDP-N-acetylglucosamine 99.9 1.5E-19 5.3E-24 189.0 27.8 240 16-345 26-266 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.9 8.5E-20 2.9E-24 191.0 25.1 240 17-345 61-300 (388)
10 4eqf_A PEX5-related protein; a 99.8 2.9E-20 1E-24 192.6 19.9 240 23-347 65-312 (365)
11 3uq3_A Heat shock protein STI1 99.8 3.5E-19 1.2E-23 173.4 25.4 231 21-347 3-238 (258)
12 3hym_B Cell division cycle pro 99.8 3.3E-19 1.1E-23 180.1 24.1 210 14-346 13-223 (330)
13 3vtx_A MAMA; tetratricopeptide 99.8 9.1E-19 3.1E-23 163.7 23.4 169 58-346 3-171 (184)
14 2q7f_A YRRB protein; TPR, prot 99.8 8.3E-19 2.8E-23 169.7 22.4 201 22-345 22-222 (243)
15 4gyw_A UDP-N-acetylglucosamine 99.8 5.4E-19 1.8E-23 202.0 23.6 182 55-356 4-185 (723)
16 1fch_A Peroxisomal targeting s 99.8 3.5E-18 1.2E-22 176.2 27.0 240 24-347 65-316 (368)
17 3vtx_A MAMA; tetratricopeptide 99.8 1.9E-18 6.4E-23 161.6 21.4 173 22-317 4-176 (184)
18 2pl2_A Hypothetical conserved 99.8 1.5E-18 5E-23 168.6 20.9 168 57-345 2-180 (217)
19 3u4t_A TPR repeat-containing p 99.8 2.9E-18 1E-22 169.3 22.8 202 25-346 5-209 (272)
20 3hym_B Cell division cycle pro 99.8 2E-18 7E-23 174.3 21.7 243 18-345 51-299 (330)
21 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-17 3.6E-22 163.5 25.3 206 19-345 32-238 (252)
22 1fch_A Peroxisomal targeting s 99.8 1.7E-17 5.7E-22 171.0 26.9 252 19-346 94-360 (368)
23 4abn_A Tetratricopeptide repea 99.8 1.1E-18 3.7E-23 190.1 17.8 200 22-342 101-318 (474)
24 2vq2_A PILW, putative fimbrial 99.8 3.7E-17 1.3E-21 155.6 26.2 206 19-345 4-211 (225)
25 3cv0_A Peroxisome targeting si 99.8 4.8E-17 1.6E-21 164.0 26.7 135 158-347 171-317 (327)
26 4i17_A Hypothetical protein; T 99.8 1.4E-17 4.6E-22 161.4 21.8 188 24-327 8-225 (228)
27 2h6f_A Protein farnesyltransfe 99.8 3.1E-18 1.1E-22 181.8 18.7 205 17-345 125-348 (382)
28 3cv0_A Peroxisome targeting si 99.8 1.7E-16 5.9E-21 159.8 30.1 241 22-346 20-270 (327)
29 2gw1_A Mitochondrial precursor 99.8 2.9E-17 9.8E-22 176.6 24.5 250 21-345 4-333 (514)
30 3mkr_A Coatomer subunit epsilo 99.8 8.7E-17 3E-21 163.8 26.7 184 39-345 78-264 (291)
31 3qky_A Outer membrane assembly 99.8 2.7E-17 9.1E-22 163.1 21.9 212 19-335 11-251 (261)
32 4abn_A Tetratricopeptide repea 99.8 3.7E-17 1.3E-21 178.0 24.9 185 40-345 82-287 (474)
33 4eqf_A PEX5-related protein; a 99.8 3.5E-17 1.2E-21 169.3 22.7 245 19-343 95-354 (365)
34 2xpi_A Anaphase-promoting comp 99.8 1E-16 3.5E-21 176.6 27.1 221 38-346 284-505 (597)
35 3fp2_A TPR repeat-containing p 99.8 3.4E-17 1.2E-21 177.5 22.7 249 21-345 23-339 (537)
36 4i17_A Hypothetical protein; T 99.7 7.7E-17 2.6E-21 156.0 20.6 171 56-345 3-209 (228)
37 2xpi_A Anaphase-promoting comp 99.7 3.3E-16 1.1E-20 172.5 27.2 235 26-345 342-579 (597)
38 3fp2_A TPR repeat-containing p 99.7 1.1E-16 3.8E-21 173.5 22.4 237 23-345 243-491 (537)
39 3nf1_A KLC 1, kinesin light ch 99.7 5E-16 1.7E-20 155.3 25.6 229 16-346 20-308 (311)
40 4gyw_A UDP-N-acetylglucosamine 99.7 4.9E-17 1.7E-21 185.8 19.6 176 18-316 4-179 (723)
41 3u4t_A TPR repeat-containing p 99.7 8.4E-17 2.9E-21 158.8 18.3 203 19-345 33-250 (272)
42 3qky_A Outer membrane assembly 99.7 4.2E-16 1.4E-20 154.4 20.8 182 52-345 7-224 (261)
43 2gw1_A Mitochondrial precursor 99.7 1.8E-16 6.2E-21 170.3 19.5 240 19-345 233-478 (514)
44 2q7f_A YRRB protein; TPR, prot 99.7 7.6E-16 2.6E-20 148.7 21.6 191 18-331 52-242 (243)
45 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.8E-16 2.3E-20 151.9 21.1 202 19-345 39-244 (275)
46 1qqe_A Vesicular transport pro 99.7 2.1E-16 7.2E-21 160.4 17.7 218 21-345 34-269 (292)
47 2hr2_A Hypothetical protein; a 99.7 2.4E-16 8.1E-21 145.9 16.1 108 238-346 6-132 (159)
48 3urz_A Uncharacterized protein 99.7 2.6E-16 9E-21 151.6 16.7 171 21-315 2-190 (208)
49 4a1s_A PINS, partner of inscut 99.7 3.5E-16 1.2E-20 164.0 19.0 221 20-346 45-293 (411)
50 2vq2_A PILW, putative fimbrial 99.7 2.3E-15 7.8E-20 143.1 22.4 174 54-345 2-176 (225)
51 3ulq_A Response regulator aspa 99.7 1.9E-15 6.4E-20 158.3 23.0 212 29-346 109-369 (383)
52 1qqe_A Vesicular transport pro 99.7 1.5E-15 5.1E-20 154.1 20.0 206 22-345 3-228 (292)
53 3as5_A MAMA; tetratricopeptide 99.7 7E-15 2.4E-19 134.9 22.4 168 59-346 7-174 (186)
54 3edt_B KLC 2, kinesin light ch 99.7 1.7E-15 5.9E-20 148.6 19.5 207 39-345 14-281 (283)
55 3sf4_A G-protein-signaling mod 99.7 1.5E-15 5.2E-20 157.7 19.5 218 22-346 8-257 (406)
56 4g1t_A Interferon-induced prot 99.7 1.6E-14 5.5E-19 154.4 27.3 196 38-345 63-276 (472)
57 1ouv_A Conserved hypothetical 99.7 2.3E-14 8E-19 142.4 26.5 193 20-345 3-215 (273)
58 3ro2_A PINS homolog, G-protein 99.7 1.9E-15 6.5E-20 151.5 18.7 217 23-346 5-253 (338)
59 3uq3_A Heat shock protein STI1 99.7 7.2E-15 2.5E-19 142.7 21.4 177 58-345 3-202 (258)
60 3mkr_A Coatomer subunit epsilo 99.7 1.1E-14 3.7E-19 148.2 23.0 220 29-345 5-229 (291)
61 2ho1_A Type 4 fimbrial biogene 99.6 6.2E-15 2.1E-19 143.8 19.9 175 53-345 29-204 (252)
62 4gco_A Protein STI-1; structur 99.6 2.5E-15 8.5E-20 133.5 15.4 94 247-345 17-110 (126)
63 3sf4_A G-protein-signaling mod 99.6 5.2E-15 1.8E-19 153.6 19.9 143 159-346 187-337 (406)
64 1ouv_A Conserved hypothetical 99.6 5.8E-14 2E-18 139.5 26.0 190 23-345 38-251 (273)
65 4ga2_A E3 SUMO-protein ligase 99.6 1.9E-15 6.5E-20 138.2 13.7 116 161-331 33-149 (150)
66 2ond_A Cleavage stimulation fa 99.6 3.6E-14 1.2E-18 144.7 24.5 210 18-346 45-271 (308)
67 4a1s_A PINS, partner of inscut 99.6 3.8E-15 1.3E-19 156.1 17.6 215 26-346 89-333 (411)
68 3q15_A PSP28, response regulat 99.6 1.4E-14 4.7E-19 151.8 21.6 218 26-348 104-368 (378)
69 3as5_A MAMA; tetratricopeptide 99.6 1.7E-14 5.7E-19 132.3 19.3 173 22-317 7-179 (186)
70 2ond_A Cleavage stimulation fa 99.6 2.5E-14 8.5E-19 145.9 22.0 184 43-345 33-232 (308)
71 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.7E-14 9.2E-19 138.9 21.0 62 23-87 4-68 (225)
72 3ro2_A PINS homolog, G-protein 99.6 9.1E-15 3.1E-19 146.5 17.8 217 24-346 44-293 (338)
73 3qou_A Protein YBBN; thioredox 99.6 1.5E-14 5.1E-19 146.7 19.5 169 57-345 114-284 (287)
74 2pzi_A Probable serine/threoni 99.6 2.7E-15 9.3E-20 170.6 15.2 175 54-345 388-563 (681)
75 3urz_A Uncharacterized protein 99.6 2.4E-14 8.1E-19 137.8 19.2 182 59-345 3-186 (208)
76 4g1t_A Interferon-induced prot 99.6 1.9E-14 6.6E-19 153.8 19.9 187 39-345 151-363 (472)
77 2r5s_A Uncharacterized protein 99.6 6.7E-15 2.3E-19 137.4 14.2 81 260-345 91-173 (176)
78 3rkv_A Putative peptidylprolyl 99.6 1.1E-14 3.8E-19 133.7 14.5 105 241-345 9-126 (162)
79 4ga2_A E3 SUMO-protein ligase 99.6 3.4E-15 1.2E-19 136.4 10.7 126 165-345 3-129 (150)
80 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.8E-14 2E-18 138.1 20.1 186 38-345 17-206 (275)
81 4gco_A Protein STI-1; structur 99.6 2.3E-14 8E-19 127.2 15.5 113 159-326 13-125 (126)
82 2yhc_A BAMD, UPF0169 lipoprote 99.6 6.9E-14 2.3E-18 136.0 19.8 185 59-345 3-213 (225)
83 3dss_A Geranylgeranyl transfer 99.6 2.5E-13 8.4E-18 140.8 22.8 207 19-345 22-267 (331)
84 4f3v_A ESX-1 secretion system 99.6 1.2E-13 4.1E-18 139.7 19.3 219 24-345 8-237 (282)
85 3ulq_A Response regulator aspa 99.6 1.3E-13 4.5E-18 144.2 20.1 182 63-346 106-294 (383)
86 2vsy_A XCC0866; transferase, g 99.6 5.5E-14 1.9E-18 155.6 17.9 165 39-323 2-169 (568)
87 1p5q_A FKBP52, FK506-binding p 99.6 1.3E-15 4.5E-20 158.2 4.5 146 160-345 148-294 (336)
88 3gyz_A Chaperone protein IPGC; 99.5 1.4E-14 4.7E-19 133.4 10.4 91 250-345 43-133 (151)
89 3nf1_A KLC 1, kinesin light ch 99.5 2.7E-13 9.3E-18 135.3 20.4 194 55-347 22-226 (311)
90 2ifu_A Gamma-SNAP; membrane fu 99.5 9.4E-14 3.2E-18 141.8 17.2 204 22-345 9-223 (307)
91 3dra_A Protein farnesyltransfe 99.5 8E-13 2.7E-17 135.8 22.7 198 23-343 32-248 (306)
92 4gcn_A Protein STI-1; structur 99.5 7E-14 2.4E-18 124.1 12.8 98 243-345 8-112 (127)
93 3q15_A PSP28, response regulat 99.5 2.9E-13 1E-17 141.6 19.8 182 62-345 103-290 (378)
94 2r5s_A Uncharacterized protein 99.5 6.7E-14 2.3E-18 130.6 13.1 170 19-310 2-172 (176)
95 3upv_A Heat shock protein STI1 99.5 3.5E-13 1.2E-17 117.9 15.0 98 244-346 5-102 (126)
96 2ifu_A Gamma-SNAP; membrane fu 99.5 4.2E-13 1.4E-17 136.9 16.4 208 18-334 30-250 (307)
97 3qou_A Protein YBBN; thioredox 99.5 7.4E-13 2.5E-17 134.1 17.6 170 20-310 114-283 (287)
98 3sz7_A HSC70 cochaperone (SGT) 99.5 1.7E-12 5.7E-17 119.3 18.1 92 250-346 18-109 (164)
99 3dra_A Protein farnesyltransfe 99.5 2.9E-12 9.8E-17 131.6 21.1 206 16-344 60-286 (306)
100 1dce_A Protein (RAB geranylger 99.5 8.6E-13 2.9E-17 146.9 18.6 207 19-345 21-267 (567)
101 2fo7_A Synthetic consensus TPR 99.5 4.3E-12 1.5E-16 109.4 18.7 130 161-345 3-132 (136)
102 3edt_B KLC 2, kinesin light ch 99.5 2.3E-12 7.9E-17 126.2 18.9 190 20-312 40-282 (283)
103 2vsy_A XCC0866; transferase, g 99.5 1.1E-12 3.8E-17 145.1 18.4 132 160-346 24-158 (568)
104 2qfc_A PLCR protein; TPR, HTH, 99.5 2.2E-12 7.6E-17 130.3 18.9 188 56-346 71-267 (293)
105 2vgx_A Chaperone SYCD; alterna 99.5 4.4E-13 1.5E-17 122.3 12.3 92 250-346 28-119 (148)
106 2xcb_A PCRH, regulatory protei 99.4 1.6E-12 5.6E-17 116.8 15.2 92 250-346 25-116 (142)
107 2qfc_A PLCR protein; TPR, HTH, 99.4 6.2E-12 2.1E-16 127.0 20.8 186 19-311 71-266 (293)
108 1a17_A Serine/threonine protei 99.4 4.1E-12 1.4E-16 115.0 17.6 132 160-346 14-147 (166)
109 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2E-12 6.7E-17 122.9 15.9 127 161-345 8-150 (213)
110 3rjv_A Putative SEL1 repeat pr 99.4 6.7E-12 2.3E-16 121.1 19.1 177 43-345 3-197 (212)
111 3gyz_A Chaperone protein IPGC; 99.4 3.2E-12 1.1E-16 117.5 15.1 111 158-325 35-145 (151)
112 1hz4_A MALT regulatory protein 99.4 3.8E-11 1.3E-15 124.4 24.9 214 26-344 17-243 (373)
113 3u3w_A Transcriptional activat 99.4 7.3E-12 2.5E-16 126.4 18.7 141 162-347 118-268 (293)
114 2c2l_A CHIP, carboxy terminus 99.4 2.4E-12 8.2E-17 130.0 14.3 194 22-343 3-197 (281)
115 1hz4_A MALT regulatory protein 99.4 2.9E-11 9.9E-16 125.4 22.8 205 38-346 105-323 (373)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.2E-11 4.3E-16 117.3 18.2 137 60-315 6-154 (213)
117 3upv_A Heat shock protein STI1 99.4 1E-11 3.5E-16 108.5 15.7 114 161-329 6-125 (126)
118 2ooe_A Cleavage stimulation fa 99.4 1.7E-11 5.8E-16 134.3 21.1 184 43-345 255-454 (530)
119 3q49_B STIP1 homology and U bo 99.4 2.2E-11 7.4E-16 107.2 17.7 93 250-347 16-108 (137)
120 3u3w_A Transcriptional activat 99.4 2.3E-11 8E-16 122.7 20.0 185 22-311 74-266 (293)
121 2vyi_A SGTA protein; chaperone 99.4 1.7E-11 5.9E-16 105.5 15.9 120 159-333 12-131 (131)
122 3sz7_A HSC70 cochaperone (SGT) 99.4 8.6E-12 2.9E-16 114.5 14.6 114 158-326 10-123 (164)
123 2ooe_A Cleavage stimulation fa 99.4 3.6E-11 1.2E-15 131.7 22.2 190 39-347 292-494 (530)
124 2lni_A Stress-induced-phosphop 99.3 1.6E-11 5.4E-16 106.6 14.2 120 157-331 14-133 (133)
125 1hxi_A PEX5, peroxisome target 99.3 6.3E-12 2.2E-16 110.4 11.4 91 250-345 24-114 (121)
126 3rkv_A Putative peptidylprolyl 99.3 1.7E-11 5.9E-16 112.2 13.5 133 161-330 13-146 (162)
127 2fbn_A 70 kDa peptidylprolyl i 99.3 4.4E-11 1.5E-15 113.2 16.6 106 240-345 35-151 (198)
128 2xcb_A PCRH, regulatory protei 99.3 1.5E-11 5E-16 110.5 12.2 114 159-327 18-131 (142)
129 3q7a_A Farnesyltransferase alp 99.3 1.1E-10 3.7E-15 121.6 20.1 186 25-332 55-258 (349)
130 4gcn_A Protein STI-1; structur 99.3 3.9E-11 1.3E-15 106.2 14.4 105 159-314 8-115 (127)
131 2e2e_A Formate-dependent nitri 99.3 1.3E-11 4.3E-16 114.4 11.5 123 168-345 19-144 (177)
132 2vgx_A Chaperone SYCD; alterna 99.3 2E-11 6.9E-16 111.1 12.5 106 159-319 21-126 (148)
133 3gw4_A Uncharacterized protein 99.3 1.6E-10 5.3E-15 108.3 19.0 170 38-311 4-176 (203)
134 1p5q_A FKBP52, FK506-binding p 99.3 4.1E-11 1.4E-15 124.2 16.3 103 242-345 146-259 (336)
135 3gw4_A Uncharacterized protein 99.3 6.5E-11 2.2E-15 110.9 16.1 143 160-346 27-177 (203)
136 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 3.4E-11 1.2E-15 130.3 15.7 140 159-338 268-407 (457)
137 4b4t_Q 26S proteasome regulato 99.3 6.7E-11 2.3E-15 124.7 17.7 216 26-347 7-247 (434)
138 2fo7_A Synthetic consensus TPR 99.3 1.9E-10 6.7E-15 98.8 17.4 99 161-314 37-135 (136)
139 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 2.8E-11 9.6E-16 130.9 14.7 104 241-345 266-380 (457)
140 2hr2_A Hypothetical protein; a 99.3 4.4E-11 1.5E-15 110.6 13.8 121 160-318 12-138 (159)
141 1ihg_A Cyclophilin 40; ppiase 99.3 7.2E-11 2.5E-15 124.4 17.3 107 239-345 219-336 (370)
142 3dss_A Geranylgeranyl transfer 99.3 6.4E-10 2.2E-14 115.1 23.9 210 16-345 57-304 (331)
143 2xm6_A Protein corresponding t 99.3 8E-10 2.7E-14 119.7 25.9 231 22-346 182-433 (490)
144 3ro3_A PINS homolog, G-protein 99.3 1E-10 3.6E-15 104.0 15.7 143 159-346 9-159 (164)
145 2fbn_A 70 kDa peptidylprolyl i 99.3 5E-11 1.7E-15 112.9 14.0 143 160-342 39-183 (198)
146 1elw_A TPR1-domain of HOP; HOP 99.3 2.1E-10 7E-15 96.9 16.5 112 161-327 6-117 (118)
147 2lni_A Stress-induced-phosphop 99.3 1E-10 3.5E-15 101.4 14.9 91 250-345 23-113 (133)
148 2if4_A ATFKBP42; FKBP-like, al 99.3 9.6E-12 3.3E-16 129.2 9.7 102 239-345 175-293 (338)
149 1na0_A Designed protein CTPR3; 99.3 2.4E-10 8.2E-15 97.3 16.7 116 160-330 10-125 (125)
150 2xm6_A Protein corresponding t 99.3 1E-09 3.5E-14 118.8 25.7 230 22-345 38-288 (490)
151 2dba_A Smooth muscle cell asso 99.2 1.7E-10 5.9E-15 102.1 15.4 94 250-345 35-128 (148)
152 2xev_A YBGF; tetratricopeptide 99.2 2.2E-10 7.5E-15 99.6 15.1 96 248-345 7-105 (129)
153 2kck_A TPR repeat; tetratricop 99.2 6.5E-11 2.2E-15 99.2 11.2 91 250-345 13-106 (112)
154 2c2l_A CHIP, carboxy terminus 99.2 1.1E-10 3.7E-15 117.8 14.6 97 246-347 7-103 (281)
155 1elw_A TPR1-domain of HOP; HOP 99.2 1.4E-10 4.6E-15 98.0 12.8 96 245-345 6-101 (118)
156 1hxi_A PEX5, peroxisome target 99.2 9.5E-11 3.2E-15 102.8 11.9 101 162-317 20-120 (121)
157 3q49_B STIP1 homology and U bo 99.2 1.5E-10 5.3E-15 101.7 13.3 114 159-327 9-127 (137)
158 1a17_A Serine/threonine protei 99.2 2.8E-10 9.5E-15 102.8 15.2 99 242-345 12-110 (166)
159 2dba_A Smooth muscle cell asso 99.2 4.1E-10 1.4E-14 99.6 15.7 118 158-328 27-145 (148)
160 2e2e_A Formate-dependent nitri 99.2 9.5E-11 3.2E-15 108.4 11.6 104 160-318 45-151 (177)
161 2xev_A YBGF; tetratricopeptide 99.2 7.6E-10 2.6E-14 96.1 16.4 120 162-331 5-125 (129)
162 1xi4_A Clathrin heavy chain; a 99.2 1.4E-09 4.7E-14 128.6 23.1 183 57-345 1102-1309(1630)
163 2vyi_A SGTA protein; chaperone 99.2 5.9E-10 2E-14 95.7 15.0 92 249-345 18-109 (131)
164 2l6j_A TPR repeat-containing p 99.2 2.7E-11 9.2E-16 102.3 6.3 92 246-342 7-104 (111)
165 2qwo_B Putative tyrosine-prote 99.2 8.7E-12 3E-16 104.1 3.0 58 396-470 33-90 (92)
166 4f3v_A ESX-1 secretion system 99.2 1.7E-10 5.7E-15 116.7 13.0 183 18-322 35-247 (282)
167 1ihg_A Cyclophilin 40; ppiase 99.2 3.4E-10 1.2E-14 119.1 16.0 139 160-337 224-362 (370)
168 2ej7_A HCG3 gene; HCG3 protein 99.2 8.9E-11 3E-15 96.5 9.0 67 393-479 6-72 (82)
169 1elr_A TPR2A-domain of HOP; HO 99.2 5.1E-10 1.8E-14 96.2 14.0 94 247-345 8-108 (131)
170 2ctp_A DNAJ homolog subfamily 99.1 1.3E-10 4.6E-15 94.5 8.7 63 394-478 5-67 (78)
171 3k9i_A BH0479 protein; putativ 99.1 1E-10 3.6E-15 101.2 8.6 90 255-346 2-91 (117)
172 1elr_A TPR2A-domain of HOP; HO 99.1 6.9E-10 2.4E-14 95.4 13.7 119 161-331 6-127 (131)
173 2ctr_A DNAJ homolog subfamily 99.1 1.3E-10 4.5E-15 96.8 8.3 59 394-474 5-63 (88)
174 2if4_A ATFKBP42; FKBP-like, al 99.1 1E-10 3.5E-15 121.4 9.3 148 160-345 180-328 (338)
175 1wjz_A 1700030A21RIK protein; 99.1 1.5E-10 5E-15 97.7 8.5 73 393-480 13-85 (94)
176 1wao_1 Serine/threonine protei 99.1 4.4E-11 1.5E-15 130.2 6.5 125 161-340 8-134 (477)
177 1iur_A KIAA0730 protein; DNAJ 99.1 5.1E-11 1.7E-15 99.1 5.4 59 394-471 14-72 (88)
178 2dn9_A DNAJ homolog subfamily 99.1 1.4E-10 4.7E-15 94.6 7.9 64 393-477 4-67 (79)
179 2yua_A Williams-beuren syndrom 99.1 1.6E-10 5.3E-15 98.5 8.5 67 393-480 14-80 (99)
180 2ys8_A RAB-related GTP-binding 99.1 5.9E-11 2E-15 99.3 5.6 56 395-471 26-81 (90)
181 1hdj_A Human HSP40, HDJ-1; mol 99.1 1.2E-10 4.2E-15 94.4 7.3 62 396-479 3-64 (77)
182 3mv2_B Coatomer subunit epsilo 99.1 3.4E-09 1.2E-13 108.4 19.8 180 45-345 85-282 (310)
183 3ro3_A PINS homolog, G-protein 99.1 2E-09 6.7E-14 95.6 15.9 151 60-314 9-161 (164)
184 2dmx_A DNAJ homolog subfamily 99.1 1.7E-10 5.7E-15 97.0 7.5 67 393-479 6-72 (92)
185 2cug_A Mkiaa0962 protein; DNAJ 99.1 1.6E-10 5.5E-15 96.3 7.4 64 393-478 14-77 (88)
186 1zu2_A Mitochondrial import re 99.1 1.1E-10 3.8E-15 107.7 7.0 86 255-345 14-120 (158)
187 3e4b_A ALGK; tetratricopeptide 99.1 7.6E-09 2.6E-13 111.5 22.5 123 160-345 249-387 (452)
188 2lgw_A DNAJ homolog subfamily 99.1 2.9E-10 9.8E-15 96.8 8.4 66 396-481 2-67 (99)
189 2ctq_A DNAJ homolog subfamily 99.1 2.7E-10 9.1E-15 99.3 8.3 70 393-483 17-86 (112)
190 2kck_A TPR repeat; tetratricop 99.1 1.7E-09 5.7E-14 90.5 13.0 101 160-315 7-110 (112)
191 3q7a_A Farnesyltransferase alp 99.1 5.2E-09 1.8E-13 108.9 19.1 205 16-343 81-329 (349)
192 2och_A Hypothetical protein DN 99.0 3.8E-10 1.3E-14 90.5 7.7 60 394-477 6-65 (73)
193 3rjv_A Putative SEL1 repeat pr 99.0 1.6E-08 5.3E-13 97.3 20.6 183 14-325 7-209 (212)
194 1na0_A Designed protein CTPR3; 99.0 4.2E-09 1.4E-13 89.5 14.8 91 250-345 16-106 (125)
195 2ctw_A DNAJ homolog subfamily 99.0 5.4E-10 1.8E-14 96.9 8.7 67 393-480 14-80 (109)
196 3e4b_A ALGK; tetratricopeptide 99.0 8.1E-09 2.8E-13 111.3 19.9 172 41-344 160-350 (452)
197 3k9i_A BH0479 protein; putativ 99.0 5E-10 1.7E-14 96.9 8.4 98 171-320 2-99 (117)
198 2qsa_A DNAJ homolog DNJ-2; J-d 99.0 4E-10 1.4E-14 97.7 6.5 71 393-481 12-83 (109)
199 3ag7_A Putative uncharacterize 99.0 1E-10 3.5E-15 100.7 2.6 63 395-471 40-102 (106)
200 1dce_A Protein (RAB geranylger 99.0 7.4E-09 2.5E-13 115.1 18.2 131 160-345 64-221 (567)
201 4b4t_Q 26S proteasome regulato 99.0 2E-08 6.9E-13 105.6 20.3 195 60-346 4-205 (434)
202 2o37_A Protein SIS1; HSP40, J- 99.0 7.7E-10 2.6E-14 92.9 7.4 63 394-480 6-68 (92)
203 2l6l_A DNAJ homolog subfamily 99.0 1.6E-09 5.5E-14 100.0 9.4 75 393-482 7-81 (155)
204 1faf_A Large T antigen; J doma 99.0 6E-10 2E-14 90.8 5.4 53 395-471 10-64 (79)
205 2kat_A Uncharacterized protein 98.9 5.9E-09 2E-13 89.4 11.9 82 260-346 2-83 (115)
206 1bq0_A DNAJ, HSP40; chaperone, 98.9 4.2E-10 1.4E-14 96.6 3.9 59 395-474 2-60 (103)
207 3hho_A CO-chaperone protein HS 98.9 1.2E-09 4.1E-14 102.6 6.9 71 395-481 3-75 (174)
208 1xi4_A Clathrin heavy chain; a 98.9 2.5E-08 8.7E-13 118.0 19.4 237 25-345 1107-1345(1630)
209 1wao_1 Serine/threonine protei 98.9 1.2E-09 4E-14 118.9 7.4 92 249-345 12-103 (477)
210 1fpo_A HSC20, chaperone protei 98.9 1.4E-09 4.7E-14 101.9 6.7 68 397-480 2-71 (171)
211 1na3_A Designed protein CTPR2; 98.9 1.9E-08 6.4E-13 81.5 12.3 76 250-330 16-91 (91)
212 2guz_A Mitochondrial import in 98.9 1.6E-09 5.5E-14 86.4 5.1 54 395-472 13-67 (71)
213 1zu2_A Mitochondrial import re 98.9 4.7E-09 1.6E-13 96.7 8.9 91 171-316 14-125 (158)
214 3bvo_A CO-chaperone protein HS 98.8 2.9E-09 1E-13 102.6 6.9 70 395-480 42-113 (207)
215 3ma5_A Tetratricopeptide repea 98.8 9.7E-09 3.3E-13 86.5 9.4 69 278-346 3-71 (100)
216 2kc7_A BFR218_protein; tetratr 98.8 4E-09 1.4E-13 87.6 6.8 85 248-345 5-90 (99)
217 1n4c_A Auxilin; four helix bun 98.8 3.2E-09 1.1E-13 99.6 6.0 59 396-471 117-175 (182)
218 1gh6_A Large T antigen; tumor 98.8 1.5E-09 5.2E-14 94.5 2.5 53 395-471 7-61 (114)
219 3apq_A DNAJ homolog subfamily 98.8 5.6E-09 1.9E-13 100.7 6.7 65 396-481 2-66 (210)
220 3n71_A Histone lysine methyltr 98.8 6.3E-08 2.2E-12 105.6 14.9 138 166-345 316-464 (490)
221 3n71_A Histone lysine methyltr 98.7 2.3E-07 7.7E-12 101.2 17.4 110 241-350 307-427 (490)
222 1b89_A Protein (clathrin heavy 98.7 6.5E-09 2.2E-13 111.0 4.7 43 38-85 15-57 (449)
223 3mv2_B Coatomer subunit epsilo 98.7 4.8E-07 1.6E-11 92.5 18.1 177 26-319 103-290 (310)
224 1b89_A Protein (clathrin heavy 98.7 3.2E-08 1.1E-12 105.6 9.5 55 26-88 35-89 (449)
225 2kat_A Uncharacterized protein 98.7 5.8E-08 2E-12 83.1 9.4 72 250-326 26-99 (115)
226 2l6j_A TPR repeat-containing p 98.6 3.2E-08 1.1E-12 83.1 6.4 97 160-307 5-103 (111)
227 3lz8_A Putative chaperone DNAJ 98.6 3.2E-09 1.1E-13 109.5 0.0 64 395-480 27-90 (329)
228 2pf4_E Small T antigen; PP2A, 98.6 1E-08 3.5E-13 95.5 1.4 55 395-474 10-66 (174)
229 3ma5_A Tetratricopeptide repea 98.6 2.3E-07 7.7E-12 77.9 9.4 73 250-327 14-88 (100)
230 3qww_A SET and MYND domain-con 98.5 5E-07 1.7E-11 97.0 13.4 103 247-349 302-415 (433)
231 1na3_A Designed protein CTPR2; 98.5 3.8E-07 1.3E-11 73.5 9.6 67 279-345 6-72 (91)
232 1klx_A Cysteine rich protein B 98.5 1.7E-06 5.9E-11 77.3 13.0 87 250-345 32-126 (138)
233 3qwp_A SET and MYND domain-con 98.4 3.1E-06 1E-10 90.7 16.6 103 247-349 291-404 (429)
234 3uo3_A J-type CO-chaperone JAC 98.4 2.1E-07 7.1E-12 87.7 6.2 67 393-483 8-81 (181)
235 2v5f_A Prolyl 4-hydroxylase su 98.4 2.9E-06 1E-10 72.0 11.4 74 250-323 12-87 (104)
236 2kc7_A BFR218_protein; tetratr 98.3 1.4E-06 4.8E-11 71.9 8.4 61 285-345 3-64 (99)
237 3bee_A Putative YFRE protein; 98.3 4.2E-06 1.4E-10 70.0 11.2 67 279-345 3-72 (93)
238 3ly7_A Transcriptional activat 98.2 1.9E-05 6.4E-10 82.3 16.2 52 19-71 193-244 (372)
239 3ly7_A Transcriptional activat 98.2 6.6E-05 2.3E-09 78.2 18.8 142 153-345 190-339 (372)
240 4e6h_A MRNA 3'-END-processing 98.1 7.5E-05 2.6E-09 84.4 19.8 208 39-346 356-571 (679)
241 1klx_A Cysteine rich protein B 98.1 3.2E-05 1.1E-09 68.9 13.2 99 165-324 31-137 (138)
242 3qwp_A SET and MYND domain-con 98.1 1.2E-05 4.1E-10 86.1 12.2 121 167-329 295-426 (429)
243 3apo_A DNAJ homolog subfamily 98.1 5E-07 1.7E-11 104.0 1.4 66 394-480 19-84 (780)
244 3qww_A SET and MYND domain-con 98.1 2.2E-05 7.5E-10 84.1 14.0 108 169-318 308-423 (433)
245 3u64_A Protein TP_0956; tetrat 98.0 0.00025 8.4E-09 71.3 18.6 84 259-345 179-269 (301)
246 4e6h_A MRNA 3'-END-processing 98.0 0.0002 6.7E-09 81.0 19.1 196 42-345 325-533 (679)
247 3bee_A Putative YFRE protein; 97.9 3.8E-05 1.3E-09 64.0 8.3 69 19-87 2-70 (93)
248 1pc2_A Mitochondria fission pr 97.8 0.00017 6E-09 65.6 12.0 71 250-324 39-113 (152)
249 2guz_B Mitochondrial import in 97.8 3E-05 1E-09 60.1 5.1 51 397-471 5-58 (65)
250 1pc2_A Mitochondria fission pr 97.6 0.00039 1.3E-08 63.3 10.7 81 260-345 15-100 (152)
251 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00052 1.8E-08 57.8 9.6 65 281-345 4-75 (104)
252 3ffl_A Anaphase-promoting comp 97.3 0.0028 9.6E-08 58.2 13.0 74 159-273 20-93 (167)
253 3ffl_A Anaphase-promoting comp 97.1 0.0043 1.5E-07 56.9 11.6 95 248-342 25-148 (167)
254 3u64_A Protein TP_0956; tetrat 97.1 0.0045 1.5E-07 62.1 12.5 86 40-189 177-270 (301)
255 4g26_A Pentatricopeptide repea 96.8 0.1 3.5E-06 56.6 22.1 92 250-345 112-204 (501)
256 2uy1_A Cleavage stimulation fa 96.6 0.3 1E-05 52.7 23.7 212 42-345 195-413 (493)
257 1nzn_A CGI-135 protein, fissio 96.6 0.012 4.2E-07 51.6 10.1 73 250-326 42-118 (126)
258 4g26_A Pentatricopeptide repea 96.5 0.13 4.4E-06 55.7 19.8 101 161-314 107-209 (501)
259 2ff4_A Probable regulatory pro 96.2 0.11 3.7E-06 54.4 16.3 103 244-346 116-235 (388)
260 2uy1_A Cleavage stimulation fa 96.0 0.36 1.2E-05 52.0 20.3 62 22-87 13-75 (493)
261 1nzn_A CGI-135 protein, fissio 96.0 0.023 8E-07 49.8 8.3 83 258-345 16-103 (126)
262 3o48_A Mitochondria fission 1 95.8 0.027 9.4E-07 49.6 8.2 73 250-326 47-122 (134)
263 1y8m_A FIS1; mitochondria, unk 95.7 0.1 3.5E-06 46.5 11.3 71 250-324 46-119 (144)
264 3mkq_A Coatomer beta'-subunit; 95.5 0.55 1.9E-05 52.8 19.5 113 162-332 684-799 (814)
265 3o48_A Mitochondria fission 1 95.2 0.074 2.5E-06 46.9 8.7 73 22-97 39-112 (134)
266 1y8m_A FIS1; mitochondria, unk 95.0 0.11 3.9E-06 46.3 9.3 73 22-97 38-111 (144)
267 3txn_A 26S proteasome regulato 93.9 4.4 0.00015 42.3 20.1 29 60-88 19-47 (394)
268 4gns_B Protein CSD3, chitin bi 92.7 0.93 3.2E-05 51.4 13.4 61 282-342 337-397 (754)
269 2ff4_A Probable regulatory pro 92.5 2 6.7E-05 44.7 14.9 111 165-310 121-233 (388)
270 3txn_A 26S proteasome regulato 91.8 6.9 0.00024 40.8 17.9 166 65-333 104-272 (394)
271 4b4t_P 26S proteasome regulato 91.6 8.6 0.00029 40.6 18.8 217 21-311 15-247 (445)
272 3mkq_A Coatomer beta'-subunit; 89.5 6.6 0.00023 43.7 16.6 75 250-342 688-762 (814)
273 4h7y_A Dual specificity protei 88.9 3.1 0.00011 37.4 10.4 103 229-345 12-123 (161)
274 3mkq_B Coatomer subunit alpha; 88.9 14 0.00048 33.9 15.4 28 161-188 36-63 (177)
275 3kae_A CDC27, possible protein 88.1 16 0.00054 33.6 15.5 97 39-188 46-143 (242)
276 3mkq_B Coatomer subunit alpha; 86.0 4.8 0.00016 37.1 10.3 44 38-86 17-60 (177)
277 4h7y_A Dual specificity protei 85.9 14 0.00048 33.2 12.8 36 53-88 6-47 (161)
278 4b4t_R RPN7, 26S proteasome re 85.1 2.6 8.7E-05 44.5 9.2 96 248-345 136-237 (429)
279 3kae_A CDC27, possible protein 83.1 14 0.00047 34.0 11.5 86 250-345 40-143 (242)
280 2wpv_A GET4, UPF0363 protein Y 83.1 38 0.0013 33.9 16.3 28 313-340 131-158 (312)
281 4a5x_A MITD1, MIT domain-conta 82.7 2.5 8.4E-05 34.2 6.0 71 311-389 9-81 (86)
282 1ya0_A SMG-7 transcript varian 82.4 3 0.0001 44.9 8.4 58 285-342 155-212 (497)
283 1zbp_A Hypothetical protein VP 81.5 11 0.00039 37.0 11.3 64 250-318 4-67 (273)
284 4gns_B Protein CSD3, chitin bi 81.2 3 0.0001 47.3 8.1 55 28-85 342-396 (754)
285 3lpz_A GET4 (YOR164C homolog); 80.5 47 0.0016 33.6 15.9 41 299-339 119-159 (336)
286 4b4t_R RPN7, 26S proteasome re 80.4 8.5 0.00029 40.4 10.9 104 161-311 133-237 (429)
287 4b4t_P 26S proteasome regulato 78.8 67 0.0023 33.6 17.6 138 161-342 179-321 (445)
288 1ya0_A SMG-7 transcript varian 78.7 7.2 0.00025 41.9 9.8 74 250-328 159-232 (497)
289 2w2u_A Hypothetical P60 katani 77.9 8 0.00027 30.9 7.5 59 320-386 23-81 (83)
290 1zbp_A Hypothetical protein VP 77.2 5.5 0.00019 39.2 7.6 56 290-345 5-60 (273)
291 4a5x_A MITD1, MIT domain-conta 76.0 3 0.0001 33.7 4.5 37 226-272 9-45 (86)
292 2v6y_A AAA family ATPase, P60 74.9 8.4 0.00029 30.7 6.8 59 320-386 15-73 (83)
293 4fhn_B Nucleoporin NUP120; pro 73.3 21 0.00073 42.3 12.8 146 159-332 842-987 (1139)
294 4fhn_B Nucleoporin NUP120; pro 72.8 69 0.0024 37.9 17.1 36 52-87 834-869 (1139)
295 1wfd_A Hypothetical protein 15 71.7 7.8 0.00027 31.6 6.1 61 320-388 19-79 (93)
296 3spa_A Mtrpol, DNA-directed RN 71.6 38 0.0013 39.7 13.7 103 159-311 127-230 (1134)
297 2v6x_A Vacuolar protein sortin 67.4 10 0.00036 30.1 5.9 61 320-388 17-77 (85)
298 2dl1_A Spartin; SPG20, MIT, st 64.7 16 0.00056 31.0 6.7 50 298-362 19-72 (116)
299 2cpt_A SKD1 protein, vacuolar 64.4 15 0.00051 31.3 6.6 60 322-388 24-83 (117)
300 3spa_A Mtrpol, DNA-directed RN 64.4 55 0.0019 38.4 13.1 93 250-344 134-229 (1134)
301 4b4t_S RPN3, 26S proteasome re 64.4 96 0.0033 33.3 14.3 119 162-333 234-358 (523)
302 2crb_A Nuclear receptor bindin 61.7 9.1 0.00031 31.1 4.3 31 60-90 15-45 (97)
303 2cfu_A SDSA1; SDS-hydrolase, l 60.8 9.6 0.00033 42.5 6.0 53 25-80 451-503 (658)
304 2crb_A Nuclear receptor bindin 58.7 13 0.00043 30.4 4.6 35 316-350 15-49 (97)
305 2w2u_A Hypothetical P60 katani 57.6 19 0.00063 28.7 5.6 31 242-272 18-48 (83)
306 2v6y_A AAA family ATPase, P60 54.7 19 0.00066 28.6 5.2 31 242-272 10-40 (83)
307 1qsa_A Protein (soluble lytic 53.2 2.6E+02 0.0088 30.6 20.2 85 253-343 262-346 (618)
308 3ax2_A Mitochondrial import re 50.7 22 0.00074 27.7 4.7 46 15-63 5-54 (73)
309 2vkj_A TM1634; membrane protei 49.1 44 0.0015 26.9 6.3 51 241-294 51-102 (106)
310 1wfd_A Hypothetical protein 15 45.2 30 0.001 28.1 5.0 25 248-272 20-44 (93)
311 2v6x_A Vacuolar protein sortin 44.9 31 0.0011 27.3 5.0 24 249-272 19-42 (85)
312 4gq2_M Nucleoporin NUP120; bet 43.3 3.4E+02 0.012 31.2 15.6 26 160-185 841-866 (950)
313 3mv2_A Coatomer subunit alpha; 43.2 2.7E+02 0.0091 27.9 14.3 24 249-272 120-143 (325)
314 1om2_A Protein (mitochondrial 42.0 26 0.00089 28.7 4.1 47 14-63 7-57 (95)
315 2cpt_A SKD1 protein, vacuolar 41.9 31 0.0011 29.3 4.8 25 248-272 23-47 (117)
316 1qsa_A Protein (soluble lytic 41.5 3.8E+02 0.013 29.2 19.4 116 158-307 319-438 (618)
317 4gq2_M Nucleoporin NUP120; bet 39.7 1.4E+02 0.0047 34.6 11.5 38 50-87 830-867 (950)
318 2yhe_A SEC-alkyl sulfatase; hy 44.9 6.5 0.00022 43.9 0.0 53 26-81 464-516 (668)
319 3mkr_B Coatomer subunit alpha; 38.7 1.8E+02 0.006 29.1 10.5 24 249-272 108-131 (320)
320 4b4t_S RPN3, 26S proteasome re 36.5 53 0.0018 35.3 6.6 66 250-315 238-303 (523)
321 3eab_A Spastin; spastin, MIT, 35.9 46 0.0016 26.8 4.6 52 298-361 13-65 (89)
322 3ax2_A Mitochondrial import re 32.6 1.1E+02 0.0038 23.6 6.1 30 244-273 18-47 (73)
323 3lew_A SUSD-like carbohydrate 31.7 65 0.0022 34.2 6.5 32 57-88 200-231 (495)
324 3myv_A SUSD superfamily protei 30.8 66 0.0023 33.7 6.3 31 58-88 188-218 (454)
325 2cfu_A SDSA1; SDS-hydrolase, l 30.4 65 0.0022 35.7 6.4 54 282-335 449-502 (658)
326 1wy6_A Hypothetical protein ST 30.4 1.9E+02 0.0066 25.5 8.0 79 256-344 74-153 (172)
327 3kez_A Putative sugar binding 30.3 71 0.0024 33.5 6.5 32 57-88 193-224 (461)
328 2ymb_A MITD1, MIT domain-conta 28.1 12 0.00042 36.4 0.0 64 320-391 27-90 (257)
329 1wy6_A Hypothetical protein ST 27.4 2E+02 0.007 25.4 7.6 61 25-87 92-152 (172)
330 3mcx_A SUSD superfamily protei 25.4 98 0.0034 32.5 6.5 31 58-88 200-230 (477)
331 1om2_A Protein (mitochondrial 24.5 1.5E+02 0.0051 24.2 5.8 30 244-273 21-50 (95)
332 3snx_A SUSD homolog, putative 24.3 74 0.0025 33.5 5.2 49 40-88 165-219 (460)
333 2ynq_A ESSB; membrane protein, 23.8 3.9E+02 0.013 23.8 11.9 85 249-342 14-99 (161)
334 3hdx_A SUSD homolog, SUSD supe 22.7 97 0.0033 32.6 5.8 31 58-88 195-225 (478)
335 3jq1_A SUSD superfamily protei 22.3 1.2E+02 0.004 32.0 6.4 30 58-87 178-207 (481)
336 2rpa_A Katanin P60 ATPase-cont 21.2 1.3E+02 0.0043 23.6 4.6 23 250-272 19-41 (78)
337 2rpa_A Katanin P60 ATPase-cont 20.8 1.2E+02 0.0042 23.7 4.5 32 319-350 15-46 (78)
338 2dl1_A Spartin; SPG20, MIT, st 20.8 2.3E+02 0.008 23.9 6.5 15 258-272 18-32 (116)
339 3qnk_A Putative lipoprotein; a 20.1 1.3E+02 0.0045 31.9 6.3 30 58-87 180-209 (517)
No 1
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.3e-27 Score=254.24 Aligned_cols=298 Identities=17% Similarity=0.216 Sum_probs=244.6
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
++..|..++ ..|++.+|+..|++++.++|.+..++..+|.+|..+|++++|+..|++++. ..|.+
T Consensus 146 ~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~--------- 210 (450)
T 2y4t_A 146 LRSQALNAF---GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK---LKNDN--------- 210 (450)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH---HHCSC---------
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC---------
Confidence 344455555 689999999999999999999999999999999999999999999999662 22211
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTG 185 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~a 185 (580)
...|+.+|.+|+..|++++|+..|+++
T Consensus 211 -----------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 211 -----------------------------------------------------TEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 235788999999999999999999999
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 008039 186 KRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRH 265 (580)
Q Consensus 186 l~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~ 265 (580)
+.+ +|++..+...+..+..+......|..++..|+|++|+..
T Consensus 238 ~~~--------------------------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 238 LKL--------------------------------------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp HHH--------------------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHh--------------------------------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876 266777777777777888888889999999999999999
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 266 FSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 266 y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.+++.+ .|.+......++.++|.++..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++++
T Consensus 280 ~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 280 YESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999997 343222335689999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhcccCCCCHHHHHHHHHHHHhhcC
Q 008039 346 YNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHK 425 (580)
Q Consensus 346 ~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~h 425 (580)
.|+.. .+...+..+... +++ ....+||.+||+.+.++..+++++|+++++++|
T Consensus 359 ---------~p~~~---------~~~~~l~~~~~~---~~~------~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 359 ---------NENDQ---------QIREGLEKAQRL---LKQ------SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp ---------SSSCH---------HHHHHHHHHHHH---HHH------HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred ---------CcchH---------HHHHHHHHHHHH---hhc------ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 23211 111112222221 121 236689999999999999999999999999999
Q ss_pred CCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 426 PDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 426 PDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
||+.+... .+..++..|+.|++||++ ++|+..
T Consensus 412 pd~~~~~~-----------------~~~~a~~~~~~i~~ay~~-L~d~~~ 443 (450)
T 2y4t_A 412 PDNFQNEE-----------------EKKKAEKKFIDIAAAKEV-LSDPEM 443 (450)
T ss_dssp GGGCCSHH-----------------HHHHHHHHHHHHHHHHHH-SSGGGG
T ss_pred CCCCCCch-----------------HHHHHHHHHHHHHHHHHH-hCCHHH
Confidence 99986533 246889999999999995 666653
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=1.2e-22 Score=197.62 Aligned_cols=196 Identities=20% Similarity=0.145 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
..-++..|..++ ..|++++|+..|+++|+++|.++.++..+|.++..+|++++|+..|++++ ++.|++.
T Consensus 5 ~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~~~P~~~----- 73 (217)
T 2pl2_A 5 EQNPLRLGVQLY---ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV---ARTPRYL----- 73 (217)
T ss_dssp CHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCH-----
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCcH-----
Confidence 345677788777 68999999999999999999999999999999999999999999999966 3333221
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc----------
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL---------- 172 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l---------- 172 (580)
..|+.+|.++..+
T Consensus 74 ---------------------------------------------------------~a~~~lg~~~~~~~~~~~~~~~~ 96 (217)
T 2pl2_A 74 ---------------------------------------------------------GGYMVLSEAYVALYRQAEDRERG 96 (217)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHTCSSHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhhhhhhhhccc
Confidence 3678899999999
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 -GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 173 -G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
|++++|+..|++++++. |++..+...+ |.
T Consensus 97 ~g~~~~A~~~~~~al~~~--------------------------------------P~~~~~~~~l------------g~ 126 (217)
T 2pl2_A 97 KGYLEQALSVLKDAERVN--------------------------------------PRYAPLHLQR------------GL 126 (217)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HH
T ss_pred ccCHHHHHHHHHHHHHhC--------------------------------------cccHHHHHHH------------HH
Confidence 99999999999999873 5555554443 99
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
+++..|++++|+..|++++++. .++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHcCChHHHHHHHHHHHhcc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 9999999999999999999982 4789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 008039 332 LPDCLHDLEHL 342 (580)
Q Consensus 332 ~~eAi~~~~~a 342 (580)
+++|+..|+++
T Consensus 201 ~~~A~~~~~~~ 211 (217)
T 2pl2_A 201 AEEAARAAALE 211 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 3
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.87 E-value=1.7e-21 Score=221.80 Aligned_cols=250 Identities=14% Similarity=0.015 Sum_probs=190.3
Q ss_pred hChhhHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 37 QEHSEIASALSLLDAAL--------ALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 37 ~~~~d~~~Al~~~~~Al--------~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
...|++.+|++.|++++ +++|.+..++..+|.+|+.+|+|++|+..|++++ +.+|+++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~p~~~----------- 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA---ERVGWRW----------- 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHHCCCH-----------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh---ccCcchH-----------
Confidence 36899999999999999 9999999999999999999999999999999966 3333222
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
..|+.+|.+|+.+|++++|+..|++++++
T Consensus 468 ---------------------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 468 ---------------------------------------------------RLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36888999999999999999999999988
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008039 189 ATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSK 268 (580)
Q Consensus 189 ~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~ 268 (580)
+ |++..+...+ |.+++..|+|++ +..|++
T Consensus 497 ~--------------------------------------P~~~~~~~~l------------g~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 497 F--------------------------------------PGELAPKLAL------------AATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp S--------------------------------------TTCSHHHHHH------------HHHHHHHTCCCT-TCHHHH
T ss_pred C--------------------------------------CCChHHHHHH------------HHHHHHcCChHH-HHHHHH
Confidence 3 5444444333 999999999999 999999
Q ss_pred HHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH-HHHHHHHHHHHH
Q 008039 269 IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC-LHDLEHLKLLYN 347 (580)
Q Consensus 269 AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA-i~~~~~al~l~~ 347 (580)
++++ .|.+..+|+++|.++..+|++++|+.+|+++++++|++..+++++|.++...++++++ ...|+++++..+
T Consensus 526 al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 526 VWST-----NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred HHHh-----CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 9997 4558899999999999999999999999999999999999999999999998887777 788888877643
Q ss_pred HhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhcccCCCCH--HHHHHHHHHHHhhcC
Q 008039 348 AILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSR--SELERAHLLLSLRHK 425 (580)
Q Consensus 348 ~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLgv~~~a~~--~ei~~ayr~lal~~h 425 (580)
... +.+. +...+.. .+...+-.++ .....+||++||+..+... .+|+++||++|..-+
T Consensus 601 ~~~-----~~~~------~~~~l~~---~ll~~~l~~~------~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~ 660 (681)
T 2pzi_A 601 ALP-----PTEP------RVLQIRA---LVLGGALDWL------KDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAP 660 (681)
T ss_dssp TSC-----TTST------THHHHHH---HHHHHHHHHH------TSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCS
T ss_pred hCC-----CCcH------HHHHHHH---HHHHHHHHHH------HccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 211 1100 0001100 1111111122 2445569999999766655 679999999988554
Q ss_pred CC
Q 008039 426 PD 427 (580)
Q Consensus 426 PD 427 (580)
++
T Consensus 661 ~~ 662 (681)
T 2pzi_A 661 TQ 662 (681)
T ss_dssp SH
T ss_pred Ch
Confidence 44
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=6e-20 Score=195.01 Aligned_cols=232 Identities=19% Similarity=0.153 Sum_probs=190.9
Q ss_pred CCcccCccccccc---ccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHH
Q 008039 3 TSPALTCTEKKHW---WLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDV 79 (580)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eA 79 (580)
+||..+.+-..+| +..+|..+..++..|..++ ..|++.+|+..|++++.++|.++.++..+|.+++.+|++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 79 (450)
T 2y4t_A 3 HHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLL---AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79 (450)
T ss_dssp --------------------CHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHH
Confidence 4455444444455 5678889999999999988 689999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccch
Q 008039 80 ADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQ 159 (580)
Q Consensus 80 i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~ 159 (580)
+..|++++. ..|++ .
T Consensus 80 ~~~~~~al~---~~p~~--------------------------------------------------------------~ 94 (450)
T 2y4t_A 80 LPDLTKVIQ---LKMDF--------------------------------------------------------------T 94 (450)
T ss_dssp HHHHHHHHH---HCTTC--------------------------------------------------------------H
T ss_pred HHHHHHHHh---cCCCc--------------------------------------------------------------H
Confidence 999999662 22211 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH---HHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE---SVSQL 236 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~---~~~~l 236 (580)
+.|+.+|.+|..+|++++|+..|++++++ +|+.. .+...
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------------------------------------NPSENEEKEAQSQ 136 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------------------------------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------------------CCCChhhHHHHHH
Confidence 46788999999999999999999998865 35555 55555
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+..+.........|..++..|+|++|+..|.+++.. .|....+++++|.+|..+|++++|+..|.+++.++|+++
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 211 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 555555666777899999999999999999999997 345789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++.+|.++...|++++|+..|++++.+
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999877
No 5
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.86 E-value=1.7e-20 Score=199.24 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=173.8
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-hHHHHHHHHhhhhhhhhcCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRR-FKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r-~~eAi~~~~~~l~~l~~~~~~ 96 (580)
.+|+...-|...+..+. ..|++.+|+..|+++|.++|.+..+|..+|.+|..+|+ |++|+.+|+++| .++|++
T Consensus 92 ~~p~~~~a~~~lg~~~~---~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al---~l~P~~ 165 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQ---RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII---EEQPKN 165 (382)
T ss_dssp CCHHHHHHHHHHHHHHH---HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---HHCTTC
T ss_pred CChhhHHHHHHHHHHHH---HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH---HHCCCC
Confidence 34556666777776665 57899999999999999999999999999999999998 999999999966 333321
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLME 176 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~e 176 (580)
.+.|+.+|.++..+|+++
T Consensus 166 --------------------------------------------------------------~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 166 --------------------------------------------------------------YQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHTCCT
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHccCHH
Confidence 247889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008039 177 DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA 256 (580)
Q Consensus 177 eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~ 256 (580)
+|+.+|+++++++ |++..+...+ |.++...
T Consensus 184 eAl~~~~kal~ld--------------------------------------P~~~~a~~~l------------g~~~~~~ 213 (382)
T 2h6f_A 184 QELEFIADILNQD--------------------------------------AKNYHAWQHR------------QWVIQEF 213 (382)
T ss_dssp THHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHhC--------------------------------------ccCHHHHHHH------------HHHHHHc
Confidence 9999999999883 5555554443 9999999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS-SGRIAES-----IADCNKTLALEPSCIQALDTRALLLETIR 330 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~-lg~~~eA-----l~~~~~Al~ldP~~~~A~~~ra~~~~~lg 330 (580)
|+|++|+..|+++|.+ .|.+..+|+++|.++.. .|.+++| +.+|.++|.++|++..+|+.+|.++..+|
T Consensus 214 g~~~eAl~~~~~al~l-----~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 214 KLWDNELQYVDQLLKE-----DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp TCCTTHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 9999999999999998 45589999999999999 5555888 59999999999999999999999999988
Q ss_pred --ChhHHHHHHHHH
Q 008039 331 --CLPDCLHDLEHL 342 (580)
Q Consensus 331 --~~~eAi~~~~~a 342 (580)
++++|+..++++
T Consensus 289 ~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 289 LSKYPNLLNQLLDL 302 (382)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh
Confidence 699998888776
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.7e-19 Score=183.80 Aligned_cols=212 Identities=16% Similarity=0.211 Sum_probs=184.9
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchh
Q 008039 27 IRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS 106 (580)
Q Consensus 27 ~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~ 106 (580)
+..+..++ ..|++.+|+..|++++.++|.++.++..+|.+++.+|++++|+..|++++ ...|.+
T Consensus 124 ~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~---------- 187 (359)
T 3ieg_A 124 RSQALDAF---DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS---KLKSDN---------- 187 (359)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCSCC----------
T ss_pred HHHHHHHH---HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCC----------
Confidence 33455555 68999999999999999999999999999999999999999999999965 222111
Q ss_pred hHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008039 107 QQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGK 186 (580)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al 186 (580)
...|+.+|.++..+|++++|+..|++++
T Consensus 188 ----------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 188 ----------------------------------------------------TEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1357889999999999999999999999
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008039 187 RLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHF 266 (580)
Q Consensus 187 ~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y 266 (580)
++. |+...+...+..+..+......|..++..|+|++|+..|
T Consensus 216 ~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 216 KLD--------------------------------------QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp HHC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhC--------------------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 772 667777778888888888888999999999999999999
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 267 SKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 267 ~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++.. .|.+......++.++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 258 ~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 258 ESVMKT-EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHH-CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhc-CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999997 344333334668899999999999999999999999999999999999999999999999999999999877
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=5.1e-19 Score=180.28 Aligned_cols=213 Identities=21% Similarity=0.187 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
.++.++..|..++ ..|++.+|+..|++++..+|.++.++..+|.+++.+|++++|+..|++++. ..|++
T Consensus 2 ~~~~~~~~~~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~----- 70 (359)
T 3ieg_A 2 DVEKHLELGKKLL---AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA---LKMDF----- 70 (359)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTC-----
T ss_pred cHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCc-----
Confidence 3567888898888 689999999999999999999999999999999999999999999999662 22211
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...|+.+|.++..+|++++|+..
T Consensus 71 ---------------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 71 ---------------------------------------------------------TAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHcCChHHHHHH
Confidence 13578899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMT---ESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP---d~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
|++++.+ +| +...+...+..+.........|..++..|+
T Consensus 94 ~~~~~~~--------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 94 FKKVLKS--------------------------------------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTS--------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhc--------------------------------------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999865 35 556666666666667777788999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
|++|+..|.+++.. .|....++.++|.++..+|++++|+..+.+++.++|+++.+++.+|.++..+|++++|+..
T Consensus 136 ~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 136 YTAAITFLDKILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999997 3457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
|++++++
T Consensus 211 ~~~a~~~ 217 (359)
T 3ieg_A 211 VRECLKL 217 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999887
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=1.5e-19 Score=189.00 Aligned_cols=240 Identities=13% Similarity=0.084 Sum_probs=142.7
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
+..+|....-++..+..++ ..|++++|+..++.++..+|.++.++..+|.++...|++++|++.|++++ ...|+
T Consensus 26 ~~~~p~~~~~~~~l~~~~~---~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~ 99 (388)
T 1w3b_A 26 WRQEPDNTGVLLLLSSIHF---QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL---RLKPD 99 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTT
T ss_pred HHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH---HcCcc
Confidence 4456666666666666665 56778888888888888888888888888888888888888888888855 34443
Q ss_pred CCCCCCCCchhhHhHHHHHhh-hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC
Q 008039 96 DSGSVSSDSSSQQLSRERVKL-LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL 174 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~ 174 (580)
+.... ...... ...++ ..+..+.+...+..+++ ....+..+|.++..+|+
T Consensus 100 ~~~~~----------~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 100 FIDGY----------INLAAALVAAGD-----------------MEGAVQAYVSALQYNPD--LYCVRSDLGNLLKALGR 150 (388)
T ss_dssp CHHHH----------HHHHHHHHHHSC-----------------SSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHTTSC
T ss_pred hHHHH----------HHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccC
Confidence 32110 000000 00010 00001111111222222 22345566777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 175 MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 175 ~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
+++|+..|++++.+. |+...+...+ |..+.
T Consensus 151 ~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------~~~~~ 180 (388)
T 1w3b_A 151 LEEAKACYLKAIETQ--------------------------------------PNFAVAWSNL------------GCVFN 180 (388)
T ss_dssp HHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHH
Confidence 777777777766552 3333222222 66666
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|++++|+..|.+++.+ .|....+++++|.++...|++++|+..+.+++.++|+++.++..+|.++...|++++
T Consensus 181 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp TTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665 233556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 008039 335 CLHDLEHLKLL 345 (580)
Q Consensus 335 Ai~~~~~al~l 345 (580)
|+..|++++++
T Consensus 256 A~~~~~~al~~ 266 (388)
T 1w3b_A 256 AIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 66666666554
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=8.5e-20 Score=190.98 Aligned_cols=240 Identities=15% Similarity=0.090 Sum_probs=183.1
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
..+|....-|...|..+. ..|++++|+..|++++.++|.+..++..+|.++..+|++++|+..|++++ +..|++
T Consensus 61 ~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~ 134 (388)
T 1w3b_A 61 KQNPLLAEAYSNLGNVYK---ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---QYNPDL 134 (388)
T ss_dssp HHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH---HHCTTC
T ss_pred hcCCCchHHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCc
Confidence 457778888889998887 68999999999999999999999999999999999999999999999965 455544
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLME 176 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~e 176 (580)
... ......++.... ...+..+-+...+..+++ ....|+.+|.++...|+++
T Consensus 135 ~~~----------~~~l~~~~~~~g----------------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 135 YCV----------RSDLGNLLKALG----------------RLEEAKACYLKAIETQPN--FAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp THH----------HHHHHHHHHTTS----------------CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHH
T ss_pred HHH----------HHHHHHHHHHcc----------------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHH
Confidence 311 000111111100 011111111122222222 3456788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008039 177 DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA 256 (580)
Q Consensus 177 eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~ 256 (580)
+|+..|++++++. |+...+...+ |..+...
T Consensus 187 ~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------g~~~~~~ 216 (388)
T 1w3b_A 187 LAIHHFEKAVTLD--------------------------------------PNFLDAYINL------------GNVLKEA 216 (388)
T ss_dssp HHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHTT
T ss_pred HHHHHHHHHHhcC--------------------------------------CCcHHHHHHH------------HHHHHHc
Confidence 9999999999873 4443333222 8888899
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..+.++++++|+++.+++.+|.++...|++++|+
T Consensus 217 ~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSL-----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp TCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHhh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999987 34478888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 008039 337 HDLEHLKLL 345 (580)
Q Consensus 337 ~~~~~al~l 345 (580)
..|++++++
T Consensus 292 ~~~~~al~~ 300 (388)
T 1w3b_A 292 DCYNTALRL 300 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999877
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=2.9e-20 Score=192.59 Aligned_cols=240 Identities=10% Similarity=0.059 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
+..++..|..++ ..|++.+|+..|++++.++|.++.++..+|.++..+|+|++|+..|++++ ...|.+
T Consensus 65 ~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~------ 132 (365)
T 4eqf_A 65 WPGAFEEGLKRL---KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL---ELQPNN------ 132 (365)
T ss_dssp CTTHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTC------
T ss_pred hhHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCC------
Confidence 445788888887 68999999999999999999999999999999999999999999999966 222211
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
...|+.+|.+|..+|++++|+..|
T Consensus 133 --------------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 133 --------------------------------------------------------LKALMALAVSYTNTSHQQDACEAL 156 (365)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHHccccHHHHHHHH
Confidence 135788899999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 008039 183 QTGKRLATAAFRRESISLS-DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL-------LLRRRTAAIAAL 254 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~-~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~-------~~~~k~~G~~~~ 254 (580)
++++++.+.....- ... ........++. .....-+...+...+..... ...+...|..++
T Consensus 157 ~~al~~~p~~~~~~--~~~~~~~~~~~~l~~----------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 157 KNWIKQNPKYKYLV--KNKKGSPGLTRRMSK----------SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HHHHHHCHHHHCC-------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHhCccchHHH--hhhccchHHHHHHHH----------HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 99998865421100 000 00000000000 00000122333333333221 222345599999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|+|++|+..|.+++.+ .|.+..+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++
T Consensus 225 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999997 345788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008039 335 CLHDLEHLKLLYN 347 (580)
Q Consensus 335 Ai~~~~~al~l~~ 347 (580)
|+..|++++++.+
T Consensus 300 A~~~~~~al~~~~ 312 (365)
T 4eqf_A 300 AVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999854
No 11
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.5e-19 Score=173.35 Aligned_cols=231 Identities=16% Similarity=0.178 Sum_probs=180.0
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
...+.+...|..++ ..|++.+|+..|++++.++ .++.++..+|.++..+|+|++|+..|++++. ..|.+...
T Consensus 3 ~~a~~~~~~g~~~~---~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~- 74 (258)
T 3uq3_A 3 SMADKEKAEGNKFY---KARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE---QGREMRAD- 74 (258)
T ss_dssp HHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCC-
T ss_pred hHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccccc-
Confidence 45677888898888 6899999999999999999 9999999999999999999999999999663 22211100
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
.......|+.+|.++..+|++++|+.
T Consensus 75 ------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 75 ------------------------------------------------------YKVISKSFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 00012367889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI-----KLLLRRRTAAIAALD 255 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~-----k~~~~~k~~G~~~~~ 255 (580)
.|++++.+.+...- + ..+ .+...+...+..+ .........|..++.
T Consensus 101 ~~~~a~~~~~~~~~----------~--~~~-----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 101 YYQKSLTEHRTADI----------L--TKL-----------------RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHCCCHHH----------H--HHH-----------------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhHH----------H--HHH-----------------hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 99999986311000 0 000 0000011111100 111223345999999
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
.|+|++|+..|.+++.. .|.+..+++++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|
T Consensus 152 ~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999997 3447899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008039 336 LHDLEHLKLLYN 347 (580)
Q Consensus 336 i~~~~~al~l~~ 347 (580)
+..|++++++.+
T Consensus 227 ~~~~~~a~~~~~ 238 (258)
T 3uq3_A 227 LETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh
Confidence 999999999853
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.3e-19 Score=180.15 Aligned_cols=210 Identities=8% Similarity=-0.019 Sum_probs=177.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc
Q 008039 14 HWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA 93 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~ 93 (580)
.+....+..++-++..+..++ ..|++.+|+..|++++..+|.+..++..++.+++.+|++++|+..+++++. ..
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~ 86 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHY---YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---LY 86 (330)
T ss_dssp -------CCCTTHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HC
T ss_pred HHHhhchhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH---hC
Confidence 444455556666778888888 579999999999999999999999999999999999999999999999662 22
Q ss_pred CCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC
Q 008039 94 NDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG 173 (580)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG 173 (580)
|.+ ...|+.+|.+++.+|
T Consensus 87 ~~~--------------------------------------------------------------~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 87 PSN--------------------------------------------------------------PVSWFAVGCYYLMVG 104 (330)
T ss_dssp TTS--------------------------------------------------------------THHHHHHHHHHHHSC
T ss_pred cCC--------------------------------------------------------------HHHHHHHHHHHHHhh
Confidence 211 135788999999999
Q ss_pred -CHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 174 -LMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 174 -~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
++++|+..|++++++. |+...+...+ |..
T Consensus 105 ~~~~~A~~~~~~a~~~~--------------------------------------~~~~~~~~~l------------~~~ 134 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE--------------------------------------KTYGPAWIAY------------GHS 134 (330)
T ss_dssp SCHHHHHHHHHHHHTTC--------------------------------------TTCTHHHHHH------------HHH
T ss_pred hhHHHHHHHHHHHHHhC--------------------------------------CccHHHHHHH------------HHH
Confidence 9999999999998652 4434443333 999
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|+++.+++.+|.++..+|++
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQL-----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHccCHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH
Confidence 99999999999999999997 3335678889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLLY 346 (580)
Q Consensus 333 ~eAi~~~~~al~l~ 346 (580)
++|+..|++++++.
T Consensus 210 ~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 210 KTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999885
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=9.1e-19 Score=163.74 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=128.8
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccc
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCF 137 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 137 (580)
.++.+|..+|.+++.+|+|++|++.|++++ +.+|++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al---~~~p~~~---------------------------------------- 39 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL---KADPNNV---------------------------------------- 39 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCH----------------------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----------------------------------------
Confidence 356777888888888888888888888855 3333211
Q ss_pred cchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 138 SVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 138 ~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
..|+.+|.+|..+|++++|+..+.+++...
T Consensus 40 ----------------------~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 69 (184)
T 3vtx_A 40 ----------------------ETLLKLGKTYMDIGLPNDAIESLKKFVVLD---------------------------- 69 (184)
T ss_dssp ----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------
T ss_pred ----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------------------------
Confidence 356778888888888888888888877652
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC
Q 008039 218 TPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~ 297 (580)
|+...+...+ |..+...++++.|+..+.+++.+ .|.+..++..+|.++..+|+
T Consensus 70 ----------~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 70 ----------TTSAEAYYIL------------GSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp ----------CCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred ----------chhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHhCC
Confidence 3334433333 77888888888888888888886 34467788888888888888
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.
T Consensus 123 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888887774
No 14
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=8.3e-19 Score=169.73 Aligned_cols=201 Identities=10% Similarity=0.062 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....|+..|..++ ..|++.+|+..|++++..+|.+..++..+|.+++.+|++++|+..|++++. ..|.
T Consensus 22 ~~~~~~~~a~~~~---~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~------ 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGS---EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE---LDSS------ 89 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT------
T ss_pred HHHHHHHHHHHHH---HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCc------
Confidence 3445677787777 789999999999999999999999999999999999999999999999662 2111
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
....++.+|.++..+|++++|+..
T Consensus 90 --------------------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~ 113 (243)
T 2q7f_A 90 --------------------------------------------------------AATAYYGAGNVYVVKEMYKEAKDM 113 (243)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------------------------chHHHHHHHHHHHHhccHHHHHHH
Confidence 123578899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++++. |+...+...+ |..++..|+|++
T Consensus 114 ~~~~~~~~--------------------------------------~~~~~~~~~~------------a~~~~~~~~~~~ 143 (243)
T 2q7f_A 114 FEKALRAG--------------------------------------MENGDLFYML------------GTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHHT--------------------------------------CCSHHHHHHH------------HHHHHHTSCHHH
T ss_pred HHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHhccHHH
Confidence 99999773 3333333222 999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
|+..|.+++.. .|....+++++|.++...|++++|+..+.+++.++|++..+++.+|.++..+|++++|+..|++
T Consensus 144 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 144 ALPYLQRAVEL-----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHh-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999997 3447889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
++++
T Consensus 219 ~~~~ 222 (243)
T 2q7f_A 219 AIDI 222 (243)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 9888
No 15
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=5.4e-19 Score=202.01 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=159.3
Q ss_pred cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCc
Q 008039 55 LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSF 134 (580)
Q Consensus 55 l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 134 (580)
-+|+++.+|.++|.+|..+|+|++|+++|+++| +++|++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl---~l~P~~~------------------------------------- 43 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKAL---EVFPEFA------------------------------------- 43 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSCCH-------------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH-------------------------------------
Confidence 479999999999999999999999999999966 3433222
Q ss_pred ccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCC
Q 008039 135 KCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSN 214 (580)
Q Consensus 135 ~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~ 214 (580)
.+|++||.+|..+|++++|+..|+++++++
T Consensus 44 -------------------------~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------------------------- 73 (723)
T 4gyw_A 44 -------------------------AAHSNLASVLQQQGKLQEALMHYKEAIRIS------------------------- 73 (723)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------
Confidence 368899999999999999999999999883
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH
Q 008039 215 NHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 215 ~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~ 294 (580)
|++..+...+ |+++...|+|++|+..|+++|++ .|.++.+|+|+|.+|..
T Consensus 74 -------------P~~~~a~~nL------------g~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 74 -------------PTFADAYSNM------------GNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKD 123 (723)
T ss_dssp -------------TTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHH
Confidence 5555554433 99999999999999999999998 45589999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 008039 295 SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLP 356 (580)
Q Consensus 295 lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p 356 (580)
+|++++|+..|++||+++|++..+++++|.++..+|++++|+..|++++++.+..+..+.++
T Consensus 124 ~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~~~l~ 185 (723)
T 4gyw_A 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLP 185 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhhccCc
Confidence 99999999999999999999999999999999999999999999999999977666555433
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=3.5e-18 Score=176.15 Aligned_cols=240 Identities=11% Similarity=0.060 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
..++..|..++ ..|++.+|+..|++++.++|.+..++..+|.+++.+|++++|+..|++++ +..|.+
T Consensus 65 ~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~~~~------- 131 (368)
T 1fch_A 65 PQPFEEGLRRL---QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL---ELKPDN------- 131 (368)
T ss_dssp SSHHHHHHHHH---HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTC-------
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH---hcCCCC-------
Confidence 34667777777 68999999999999999999999999999999999999999999999966 222211
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
...++.+|.+|..+|++++|+..|+
T Consensus 132 -------------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 132 -------------------------------------------------------QTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1357889999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCC--CCCC---CCCChHHHHHHHHHHH-------HHHHHHHHHH
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPA--TPPR---TMTESESVSQLLSHIK-------LLLRRRTAAI 251 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~--~~~~---~dPd~~~~~~ll~~~k-------~~~~~k~~G~ 251 (580)
+++.+.+..... ...++.......... ..+. ..-+...+...+..+. ....+...|.
T Consensus 157 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 157 DWLRYTPAYAHL-----------VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp HHHHTSTTTGGG-----------CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred HHHHhCcCcHHH-----------HHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 999875321100 000000000000000 0000 0000111111111111 1122344599
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..|++++.++|++..+++.+|.++..+|+
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999997 344788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLLYN 347 (580)
Q Consensus 332 ~~eAi~~~~~al~l~~ 347 (580)
+++|+..|++++++.+
T Consensus 301 ~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 301 HREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999999853
No 17
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=1.9e-18 Score=161.56 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-|+..|..+. ..|++++|+..|+++|+++|+++.++..+|.++..+|++++|+..+.+++. ..|.
T Consensus 4 ~~~iy~~lG~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~------ 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKR---TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTT------ 71 (184)
T ss_dssp CHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCC------
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCch------
Confidence 3455778888877 689999999999999999999999999999999999999999999998652 2111
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
....+..+|.++...++++.|+..
T Consensus 72 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~ 95 (184)
T 3vtx_A 72 --------------------------------------------------------SAEAYYILGSANFMIDEKQAAIDA 95 (184)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 113577789999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
+.+++.+. |++..+...+ |..++..|+|++
T Consensus 96 ~~~a~~~~--------------------------------------~~~~~~~~~l------------g~~~~~~g~~~~ 125 (184)
T 3vtx_A 96 LQRAIALN--------------------------------------TVYADAYYKL------------GLVYDSMGEHDK 125 (184)
T ss_dssp HHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHTTCHHH
T ss_pred HHHHHHhC--------------------------------------ccchHHHHHH------------HHHHHHhCCchh
Confidence 99998773 4444444333 999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|+..|++++++ .|.++.+|+++|.+|..+|++++|+.+|++||+++|+++.
T Consensus 126 A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 126 AIEAYEKTISI-----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHh-----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 99999999997 4558899999999999999999999999999999998643
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=1.5e-18 Score=168.60 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=148.1
Q ss_pred CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccc
Q 008039 57 PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKC 136 (580)
Q Consensus 57 P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 136 (580)
|.++.++..+|.+++..|++++|+..|++++ +..|++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~--------------------------------------- 39 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERAL---KENPQDP--------------------------------------- 39 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTSSSCH---------------------------------------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH---------------------------------------
Confidence 7788999999999999999999999999965 3333221
Q ss_pred ccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCC
Q 008039 137 FSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNH 216 (580)
Q Consensus 137 ~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~ 216 (580)
..|+.+|.++..+|++++|+..|++++++.
T Consensus 40 -----------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------- 69 (217)
T 2pl2_A 40 -----------------------EALYWLARTQLKLGLVNPALENGKTLVART--------------------------- 69 (217)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------
Confidence 367889999999999999999999999873
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhccCCCCCcccHHHH
Q 008039 217 QTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA-----------GLYSEAIRHFSKIVDGRRGAPQGFLAECY 285 (580)
Q Consensus 217 ~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~-----------g~y~eAi~~y~~AL~~~~~~~~~~~a~~~ 285 (580)
|++..+...+ |..+... |++++|+..|.+++++ .|.+..++
T Consensus 70 -----------P~~~~a~~~l------------g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~ 121 (217)
T 2pl2_A 70 -----------PRYLGGYMVL------------SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPLH 121 (217)
T ss_dssp -----------TTCHHHHHHH------------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred -----------CCcHHHHHHH------------HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHHH
Confidence 5555554444 8888888 9999999999999997 45588999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 286 MHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 286 ~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|.++..+|++++|+..|+++++++ +++.+++.+|.++..+|++++|+..|++++++
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 99999999999999999999999999999888
No 19
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=2.9e-18 Score=169.28 Aligned_cols=202 Identities=14% Similarity=0.062 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
.++..|..++ ..|++++|+..|+++++++|.+..++..+|.+++.+|+|++|+..|++++. .+.++.
T Consensus 5 ~~~~~a~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~------ 71 (272)
T 3u4t_A 5 VEFRYADFLF---KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS----KVNATK------ 71 (272)
T ss_dssp CHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT----TSCTTT------
T ss_pred HHHHHHHHHH---HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----ccCchh------
Confidence 3567787887 789999999999999999999999999999999999999999999999662 111110
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
.....|+.+|.++..+|++++|+..|++
T Consensus 72 ----------------------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (272)
T 3u4t_A 72 ----------------------------------------------------AKSADFEYYGKILMKKGQDSLAIQQYQA 99 (272)
T ss_dssp ----------------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0112578899999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
++++. |+...+...+ |..++..|+|++|+.
T Consensus 100 a~~~~--------------------------------------~~~~~~~~~l------------~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 100 AVDRD--------------------------------------TTRLDMYGQI------------GSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHHS--------------------------------------TTCTHHHHHH------------HHHHHHTTCHHHHHH
T ss_pred HHhcC--------------------------------------cccHHHHHHH------------HHHHHHccCHHHHHH
Confidence 99873 3333333333 999999999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC---LPDCLHDLEH 341 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~---~~eAi~~~~~ 341 (580)
.|.+++.+ .|....+++++|......+++++|+..+.++++++|++..+++.+|.++..+|+ +++|+..|++
T Consensus 130 ~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 130 YMEKQIRP-----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHGGGCCS-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHhhc-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 99999997 455789999999444445699999999999999999999999999999999999 9999999999
Q ss_pred HHHHH
Q 008039 342 LKLLY 346 (580)
Q Consensus 342 al~l~ 346 (580)
++++.
T Consensus 205 a~~~~ 209 (272)
T 3u4t_A 205 LIEVC 209 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99884
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2e-18 Score=174.28 Aligned_cols=243 Identities=10% Similarity=0.040 Sum_probs=177.8
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-ChHHHHHHHHhhhhhhhhcCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLR-RFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~-r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
.+|....-+...+..++ ..|++.+|+..+++++.++|.++.++..+|.+++.+| ++++|+..|++++ ...|.+
T Consensus 51 ~~p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~---~~~~~~ 124 (330)
T 3hym_B 51 KDPFHASCLPVHIGTLV---ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT---TLEKTY 124 (330)
T ss_dssp HCTTCTTTHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH---TTCTTC
T ss_pred cCCCChhhHHHHHHHHH---HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HhCCcc
Confidence 44555555555666666 5788999999999999999999999999999999999 8999999999865 444433
Q ss_pred CCCCCCCchhhHhHHHHHhhhc-CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLH-SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
... ....+.++. .+ ......+-+...+...++ ....++.+|.+|..+|++
T Consensus 125 ~~~----------~~~l~~~~~~~~-----------------~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 125 GPA----------WIAYGHSFAVES-----------------EHDQAMAAYFTAAQLMKG--CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp THH----------HHHHHHHHHHHT-----------------CHHHHHHHHHHHHHHTTT--CSHHHHHHHHHHHHTTCH
T ss_pred HHH----------HHHHHHHHHHcc-----------------CHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhH
Confidence 311 000001100 00 000000111111222222 234566789999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+..|++++.+. |++..+...+ |..++.
T Consensus 176 ~~A~~~~~~al~~~--------------------------------------~~~~~~~~~l------------~~~~~~ 205 (330)
T 3hym_B 176 KLAERFFSQALSIA--------------------------------------PEDPFVMHEV------------GVVAFQ 205 (330)
T ss_dssp HHHHHHHHHHHTTC--------------------------------------TTCHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------------------------CCChHHHHHH------------HHHHHH
Confidence 99999999988652 4443333332 999999
Q ss_pred cCCHHHHHHHHHHHHhccCC----CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 256 AGLYSEAIRHFSKIVDGRRG----APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~----~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.|+|++|+..|.+++...+. ...+....+++++|.++..+|++++|+..+++++.++|++..+++.+|.++..+|+
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 99999999999999997321 11144678999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLL 345 (580)
Q Consensus 332 ~~eAi~~~~~al~l 345 (580)
+++|+..|++++++
T Consensus 286 ~~~A~~~~~~al~~ 299 (330)
T 3hym_B 286 FENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999999766
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=1.1e-17 Score=163.55 Aligned_cols=206 Identities=14% Similarity=-0.007 Sum_probs=176.6
Q ss_pred hhhh-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 19 NRKI-VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 19 ~~~~-~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
++.. +.-++..|..++ ..|++++|+..|++++.++|.+..++..+|.+++.+|++++|++.|++++. ..|.+
T Consensus 32 ~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~- 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYL---QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA---SDSRN- 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHH---HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC-
T ss_pred chHHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCcCc-
Confidence 4443 677888888887 689999999999999999999999999999999999999999999999662 22111
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
...++.+|.+|+.+|++++
T Consensus 105 -------------------------------------------------------------~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 105 -------------------------------------------------------------ARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHhHHHH
Confidence 1357789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++.. ..+|....+...+ |..++..|
T Consensus 124 A~~~~~~~~~~------------------------------------~~~~~~~~~~~~l------------a~~~~~~g 155 (252)
T 2ho1_A 124 AYQRLLEASQD------------------------------------TLYPERSRVFENL------------GLVSLQMK 155 (252)
T ss_dssp HHHHHHHHTTC------------------------------------TTCTTHHHHHHHH------------HHHHHHTT
T ss_pred HHHHHHHHHhC------------------------------------ccCcccHHHHHHH------------HHHHHHcC
Confidence 99999997741 0124333333332 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..++..++.++..+|++++|+.
T Consensus 156 ~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRL-----NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp CHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999997 344788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.|++++++
T Consensus 231 ~~~~~~~~ 238 (252)
T 2ho1_A 231 YGLQLKRL 238 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.7e-17 Score=171.00 Aligned_cols=252 Identities=13% Similarity=0.048 Sum_probs=184.1
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+|....-+...|..++ ..|++++|+..|.++++++|.+..++..+|.++..+|++++|+..|++++ ...|.+..
T Consensus 94 ~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 167 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQA---ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL---RYTPAYAH 167 (368)
T ss_dssp CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTSTTTGG
T ss_pred CCCCHHHHHHHHHHHH---HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCcHH
Confidence 4444555566666665 57999999999999999999999999999999999999999999999966 34443332
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcc-cccchHHH---HHHHHhhhccccccchhHHHHHHHHHHhcCC
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFK-CFSVSDLK---KKVMAGLCRNCEKEGQWRYLVLGQACCHLGL 174 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~---k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~ 174 (580)
........ . ....+. .....+. ++...+.. .-+...+..+++....+.++.+|.+|+..|+
T Consensus 168 ~~~~~~~~------~-~~~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 168 LVTPAEEG------A-GGAGLG--------PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp GCC------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH------h-hhhccc--------HHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 21100000 0 000000 0000000 00000111 1111122333332245678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 175 MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 175 ~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
+++|+..|++++.+. |+...+...+ |..++
T Consensus 233 ~~~A~~~~~~al~~~--------------------------------------~~~~~~~~~l------------~~~~~ 262 (368)
T 1fch_A 233 YDKAVDCFTAALSVR--------------------------------------PNDYLLWNKL------------GATLA 262 (368)
T ss_dssp HHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHhC--------------------------------------cCCHHHHHHH------------HHHHH
Confidence 999999999999772 4443333333 99999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----------HHHHHHHH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC-----------IQALDTRA 323 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~-----------~~A~~~ra 323 (580)
..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|++ ..+|..+|
T Consensus 263 ~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 999999999999999997 34578999999999999999999999999999999988 89999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.++..+|++++|...++++++..
T Consensus 338 ~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 338 LALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHhCChHhHHHhHHHHHHHH
Confidence 99999999999999999988774
No 23
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=190.08 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHHhhChhhH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEI-ASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~-~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
...-++..|..++ ..|++ ++|+..|+++|+++|.++.+|..+|.+|+.+|+|++|+++|++++ ++.|+
T Consensus 101 ~a~~~~~lg~~~~---~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~----- 169 (474)
T 4abn_A 101 EAQALMLKGKALN---VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL---THCKN----- 169 (474)
T ss_dssp CHHHHHHHHHHHT---SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTCCC-----
T ss_pred hHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCC-----
Confidence 3444555555554 57999 999999999999999999999999999999999999999999966 22111
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc--------
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL-------- 172 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l-------- 172 (580)
...|+.+|.+|..+
T Consensus 170 ----------------------------------------------------------~~~~~~lg~~~~~~~~~~~~~~ 191 (474)
T 4abn_A 170 ----------------------------------------------------------KVSLQNLSMVLRQLQTDSGDEH 191 (474)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTTCCCSCHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHhccCChhhh
Confidence 14678899999999
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 -GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 173 -G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
|++++|+..|++++++. |++..+...+ |.
T Consensus 192 ~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------g~ 221 (474)
T 4abn_A 192 SRHVMDSVRQAKLAVQMD--------------------------------------VLDGRSWYIL------------GN 221 (474)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HH
T ss_pred hhhHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HH
Confidence 99999999999999873 5555444443 88
Q ss_pred HHHHc--------CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 252 AALDA--------GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 252 ~~~~~--------g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
.++.. |+|++|+..|.+++.+. |. .+.++.+|+++|.+|..+|++++|+..|.++++++|++..++..++
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhC-CC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 88888 99999999999999972 21 1168999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~a 342 (580)
.++..+|++++|+..+.++
T Consensus 300 ~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999877654
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=3.7e-17 Score=155.55 Aligned_cols=206 Identities=12% Similarity=0.076 Sum_probs=175.9
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
++..+.-++..|..++ ..|++.+|+..|.+++.++|.+..++..+|.+++.+|++++|++.|++++. ..|.
T Consensus 4 ~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~--- 74 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYM---RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS---IKPD--- 74 (225)
T ss_dssp CCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT---
T ss_pred CcccHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCC---
Confidence 4556677788888887 689999999999999999999999999999999999999999999999662 2111
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc-CCHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL-GLMED 177 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l-G~~ee 177 (580)
..+.++.+|.+++.. |++++
T Consensus 75 -----------------------------------------------------------~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 75 -----------------------------------------------------------SAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHTTTCCHHH
T ss_pred -----------------------------------------------------------ChHHHHHHHHHHHHhcCcHHH
Confidence 013577899999999 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++.. + .+|....+... . |..++..|
T Consensus 96 A~~~~~~~~~~-~-----------------------------------~~~~~~~~~~~--l----------~~~~~~~~ 127 (225)
T 2vq2_A 96 SMAYFDKALAD-P-----------------------------------TYPTPYIANLN--K----------GICSAKQG 127 (225)
T ss_dssp HHHHHHHHHTS-T-----------------------------------TCSCHHHHHHH--H----------HHHHHHTT
T ss_pred HHHHHHHHHcC-c-----------------------------------CCcchHHHHHH--H----------HHHHHHcC
Confidence 99999998751 0 12333333322 2 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhcCChhHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-SCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
++++|+..|.+++.. .|.+..+++++|.++..+|++++|+..+++++.++| ++..++..++.++...|++++|.
T Consensus 128 ~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAA-----QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp CHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999997 344788999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHH
Q 008039 337 HDLEHLKLL 345 (580)
Q Consensus 337 ~~~~~al~l 345 (580)
..++.++++
T Consensus 203 ~~~~~~~~~ 211 (225)
T 2vq2_A 203 EYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998776
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=4.8e-17 Score=163.97 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=118.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
....++.+|.++...|++++|+..|++++++. |+...+...+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~l 212 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--------------------------------------PDDAQLWNKL 212 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------------------------------CCcHHHHHHH
Confidence 34667889999999999999999999998762 4433333332
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS--- 314 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--- 314 (580)
|..++..|++++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|+
T Consensus 213 ------------~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 275 (327)
T 3cv0_A 213 ------------GATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275 (327)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred ------------HHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999999997 3447889999999999999999999999999999999
Q ss_pred ---------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 315 ---------CIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 315 ---------~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
+..++..+|.++..+|++++|...|+++++..+
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999988753
No 26
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=1.4e-17 Score=161.40 Aligned_cols=188 Identities=11% Similarity=0.124 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
+.++..|..++ ..|++.+|+..|++++.++| .+..++..+|.+++.+|+|++|+..|++++ +..|.
T Consensus 8 ~~~~~~g~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~------- 74 (228)
T 4i17_A 8 NQLKNEGNDAL---NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYN------- 74 (228)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCS-------
T ss_pred HHHHHHHHHHH---HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcc-------
Confidence 66788888888 68999999999999999999 899999999999999999999999999966 22221
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
....|+.+|.+|..+|++++|+..|
T Consensus 75 -------------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 75 -------------------------------------------------------LANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------------------------hHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1246888999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEA 262 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eA 262 (580)
++++++. |++......+ ...+...|..++..|+|++|
T Consensus 100 ~~al~~~--------------------------------------p~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 100 TEGIKAV--------------------------------------PGNATIEKLY-----AIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp HHHHHHS--------------------------------------TTCHHHHHHH-----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHC--------------------------------------CCcHHHHHHH-----HHHHHHHhHHHHHhccHHHH
Confidence 9999873 4444331111 12233449999999999999
Q ss_pred HHHHHHHHhccCCCCCcc--cHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHhcCC
Q 008039 263 IRHFSKIVDGRRGAPQGF--LAECYMHRAFAYRSSGRI---------------------------AESIADCNKTLALEP 313 (580)
Q Consensus 263 i~~y~~AL~~~~~~~~~~--~a~~~~nra~a~~~lg~~---------------------------~eAl~~~~~Al~ldP 313 (580)
+..|.+++++ .|. ...+++++|.+|..+|+. ++|+.+++++++++|
T Consensus 137 ~~~~~~al~~-----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 137 EENYKHATDV-----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhc-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999997 566 789999999999998887 777777777777777
Q ss_pred CcHHHHHHHHHHHH
Q 008039 314 SCIQALDTRALLLE 327 (580)
Q Consensus 314 ~~~~A~~~ra~~~~ 327 (580)
++..++..++.+..
T Consensus 212 ~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 212 NRTEIKQMQDQVKA 225 (228)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 77777766666654
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=3.1e-18 Score=181.75 Aligned_cols=205 Identities=10% Similarity=0.029 Sum_probs=175.0
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSE-IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d-~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
..+|....-|...+..+. ..|+ +.+|+..|+++|+++|.+..+|.++|.+|..+|+|++|+.+|+++| +++|+
T Consensus 125 ~l~P~~~~a~~~~g~~l~---~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal---~ldP~ 198 (382)
T 2h6f_A 125 ELNAANYTVWHFRRVLLK---SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL---NQDAK 198 (382)
T ss_dssp HHCTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH---HHCTT
T ss_pred HhCccCHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCcc
Confidence 356677777777887776 5785 9999999999999999999999999999999999999999999966 33332
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
+ ..+|+.+|.++..+|++
T Consensus 199 ~--------------------------------------------------------------~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 199 N--------------------------------------------------------------YHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp C--------------------------------------------------------------HHHHHHHHHHHHHHTCC
T ss_pred C--------------------------------------------------------------HHHHHHHHHHHHHcCCh
Confidence 2 24688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+.+|+++++++ |++..+...+ |.++..
T Consensus 217 ~eAl~~~~~al~l~--------------------------------------P~~~~a~~~l------------g~~l~~ 246 (382)
T 2h6f_A 217 DNELQYVDQLLKED--------------------------------------VRNNSVWNQR------------YFVISN 246 (382)
T ss_dssp TTHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHH
Confidence 99999999999883 5555555444 899999
Q ss_pred -cCCHHHH-----HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 256 -AGLYSEA-----IRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG--RIAESIADCNKTLALEPSCIQALDTRALLLE 327 (580)
Q Consensus 256 -~g~y~eA-----i~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg--~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~ 327 (580)
.|.+++| +.+|.++|.+ .|.+..+|+++|.++..+| ++++|+..|.++ .++|++..++..+|.+|.
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYE 320 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHH
Confidence 5665888 5999999998 4558899999999999988 699999999998 999999999999999999
Q ss_pred hcC---------ChhHHHHHHHHH-HHH
Q 008039 328 TIR---------CLPDCLHDLEHL-KLL 345 (580)
Q Consensus 328 ~lg---------~~~eAi~~~~~a-l~l 345 (580)
.+| .+++|+..|+++ +++
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 985 358999999998 666
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.7e-16 Score=159.82 Aligned_cols=241 Identities=11% Similarity=-0.005 Sum_probs=182.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....++..|..++ ..|++.+|+..|++++..+|.+..++..+|.+++.+|++++|+..|++++. ..|.+
T Consensus 20 ~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~----- 88 (327)
T 3cv0_A 20 YHENPMEEGLSML---KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKD----- 88 (327)
T ss_dssp GSSCHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC-----
T ss_pred hhHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcCC-----
Confidence 4556788898888 689999999999999999999999999999999999999999999999662 22211
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...++.+|.++...|++++|+..
T Consensus 89 ---------------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 89 ---------------------------------------------------------IAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 13577899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCC---CCCCCCC-CC-CCCCCCChHHHHHHHHHHHH-----HHHHHHHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVS---NNHQTPP-AT-PPRTMTESESVSQLLSHIKL-----LLRRRTAAI 251 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~---~~~~~~~-~~-~~~~dPd~~~~~~ll~~~k~-----~~~~k~~G~ 251 (580)
|++++.+.+... ... ..+... ....... .. .....-+...+...+..+.. .......|.
T Consensus 112 ~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 112 LRAWLLSQPQYE---------QLG--SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HHHHHHTSTTTT---------TC----------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHhCCccH---------HHH--HHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999997743210 000 000000 0000000 00 00000112223333322221 223455699
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.++..|++++|+..|.+++.. .|....++.++|.++..+|++++|+..+.+++.++|++..+++.+|.++..+|+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999997 344788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLLY 346 (580)
Q Consensus 332 ~~eAi~~~~~al~l~ 346 (580)
+++|+..|++++++.
T Consensus 256 ~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999884
No 29
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.9e-17 Score=176.59 Aligned_cols=250 Identities=14% Similarity=0.079 Sum_probs=181.7
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
+.++.++..|..++ ..|++.+|+..|++++.++| ++.++..+|.+++.+|+|++|+..|++++ +..|++
T Consensus 4 ~~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~---- 72 (514)
T 2gw1_A 4 KYALALKDKGNQFF---RNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKAL---ELKPDY---- 72 (514)
T ss_dssp HHHHHHHHHHHHHH---HTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCSCC----
T ss_pred hhHHHHHHHHHHHH---HhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHh---ccChHH----
Confidence 46778899999988 68999999999999999999 58999999999999999999999999966 222211
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
...|+.+|.+|+.+|++++|+.
T Consensus 73 ----------------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 73 ----------------------------------------------------------SKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHhhHHHHHH
Confidence 1367889999999999999999
Q ss_pred HHHHHHHHHHHhhhh-----------hhcccCCCCC-------------C-------CC---C----------CCCCCCC
Q 008039 181 LLQTGKRLATAAFRR-----------ESISLSDDSF-------------P-------FS---K----------FPVSNNH 216 (580)
Q Consensus 181 ~l~~al~l~~~~~r~-----------~~~~~~~d~~-------------~-------~~---~----------l~~~~~~ 216 (580)
.|++++.+.+..... .........+ . .. . ++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999998764310000 0000000000 0 00 0 0000000
Q ss_pred CCC--CCCCC---------------CCCCChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHcCCHH
Q 008039 217 QTP--PATPP---------------RTMTESESVSQLLSHIKL-------------------LLRRRTAAIAALDAGLYS 260 (580)
Q Consensus 217 ~~~--~~~~~---------------~~dPd~~~~~~ll~~~k~-------------------~~~~k~~G~~~~~~g~y~ 260 (580)
... ...+. ....+...+...+..+.. ...+...|..++..|+|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 000 00000 001122333333333222 233456689999999999
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 008039 261 EAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLE 340 (580)
Q Consensus 261 eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~ 340 (580)
+|+..|.+++.. .|. ..+++++|.++..+|++++|+..+.+++.++|++..+++.+|.++..+|++++|+..|+
T Consensus 255 ~A~~~~~~~l~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 255 GAHEDIKKAIEL-----FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp HHHHHHHHHHHH-----CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhh-----Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999997 334 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 008039 341 HLKLL 345 (580)
Q Consensus 341 ~al~l 345 (580)
+++++
T Consensus 329 ~~~~~ 333 (514)
T 2gw1_A 329 KAKEL 333 (514)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99876
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=8.7e-17 Score=163.80 Aligned_cols=184 Identities=14% Similarity=0.051 Sum_probs=142.8
Q ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 39 HSEIASALSLLDAALAL--SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l--~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
.|++++|+..|++++.. +|+++.++..+|.+++..|++++|++.|++ |
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~---------------------- 127 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------G---------------------- 127 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------C----------------------
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------C----------------------
Confidence 45666777777766654 466777777777777777777777765554 0
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
.....++.+|.+|..+|++++|+..|++++++.
T Consensus 128 ----------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------- 160 (291)
T 3mkr_A 128 ----------------------------------------DSLECMAMTVQILLKLDRLDLARKELKKMQDQD------- 160 (291)
T ss_dssp ----------------------------------------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred ----------------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------
Confidence 112357789999999999999999999998773
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
|++......... .+.+...|++++|+..|+++++.
T Consensus 161 -------------------------------p~~~~~~l~~a~----------~~l~~~~~~~~eA~~~~~~~l~~---- 195 (291)
T 3mkr_A 161 -------------------------------EDATLTQLATAW----------VSLAAGGEKLQDAYYIFQEMADK---- 195 (291)
T ss_dssp -------------------------------TTCHHHHHHHHH----------HHHHHCTTHHHHHHHHHHHHHHH----
T ss_pred -------------------------------cCcHHHHHHHHH----------HHHHhCchHHHHHHHHHHHHHHh----
Confidence 443211111100 23344569999999999999997
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH-HHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC-LHDLEHLKLL 345 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA-i~~~~~al~l 345 (580)
.|.++.+++++|.++..+|++++|+..+.++|.++|+++.+++++|.++..+|+++++ ...+++++++
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3458899999999999999999999999999999999999999999999999999875 6788999888
No 31
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=2.7e-17 Score=163.09 Aligned_cols=212 Identities=13% Similarity=0.061 Sum_probs=168.8
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL---ELALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~---~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
++...+.++..|..++ ..|++.+|+..|++++..+|.+ +.++..+|.+++.+|+|++|+..|++++ ...|+
T Consensus 11 ~~~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l---~~~p~ 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFY---NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI---QIYQI 84 (261)
T ss_dssp CCSSHHHHHHHHHHHH---HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT
T ss_pred CCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH---HHCCC
Confidence 4456778889999988 6899999999999999999999 9999999999999999999999999966 33332
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh----
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH---- 171 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~---- 171 (580)
++ ...++++.+|.+++.
T Consensus 85 ~~-----------------------------------------------------------~~~~a~~~lg~~~~~~~~~ 105 (261)
T 3qky_A 85 DP-----------------------------------------------------------RVPQAEYERAMCYYKLSPP 105 (261)
T ss_dssp CT-----------------------------------------------------------THHHHHHHHHHHHHHHCCC
T ss_pred Cc-----------------------------------------------------------hhHHHHHHHHHHHHHhccc
Confidence 21 112468889999999
Q ss_pred ----cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH-----
Q 008039 172 ----LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL----- 242 (580)
Q Consensus 172 ----lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~----- 242 (580)
+|++++|+..|++++++. |++..+...+..+..
T Consensus 106 ~~~~~~~~~~A~~~~~~~l~~~--------------------------------------p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 106 YELDQTDTRKAIEAFQLFIDRY--------------------------------------PNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHC--------------------------------------TTCTTHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHC--------------------------------------cCchhHHHHHHHHHHHHHHH
Confidence 999999999999999873 333333222222211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcC
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS----------GRIAESIADCNKTLALE 312 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l----------g~~~eAl~~~~~Al~ld 312 (580)
.......|..++..|+|++|+..|++++.. .|. .+....+++++|.+|..+ |++++|+..|.+++..+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDA-YPD-TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCC-CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 122356699999999999999999999996 343 445788999999999988 99999999999999999
Q ss_pred CCc---HHHHHHHHHHHHhcCChhHH
Q 008039 313 PSC---IQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 313 P~~---~~A~~~ra~~~~~lg~~~eA 335 (580)
|++ ..++..++.++..+++++++
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 998 46677777777777666554
No 32
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.77 E-value=3.7e-17 Score=178.00 Aligned_cols=185 Identities=14% Similarity=0.116 Sum_probs=164.2
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCh-HHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRF-KDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~-~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
+++..++..++.++...|.++.++..+|.+++.+|+| ++|++.|++++ ++.|++
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al---~~~p~~---------------------- 136 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV---KLEPEL---------------------- 136 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH---HHCTTC----------------------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHH---hhCCCC----------------------
Confidence 4588999999999999999999999999999999999 99999999966 332221
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.+.|+.+|.+|+.+|++++|+..|++++++
T Consensus 137 ----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---------- 166 (474)
T 4abn_A 137 ----------------------------------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH---------- 166 (474)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----------
T ss_pred ----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------
Confidence 246888999999999999999999999876
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA---------GLYSEAIRHFSKI 269 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~---------g~y~eAi~~y~~A 269 (580)
+|+ .. .+... |..++.. |+|++|+..|.++
T Consensus 167 ----------------------------~p~-~~--~~~~l----------g~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 167 ----------------------------CKN-KV--SLQNL----------SMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp ----------------------------CCC-HH--HHHHH----------HHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCC-HH--HHHHH----------HHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 255 22 23333 8899998 9999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 270 VDGRRGAPQGFLAECYMHRAFAYRSS--------GRIAESIADCNKTLALEP---SCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 270 L~~~~~~~~~~~a~~~~nra~a~~~l--------g~~~eAl~~~~~Al~ldP---~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
+++ .|.+..+|+++|.+|..+ |++++|+..|+++++++| +++.+|+.+|.+|..+|++++|+..
T Consensus 206 l~~-----~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 280 (474)
T 4abn_A 206 VQM-----DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280 (474)
T ss_dssp HHH-----CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHh-----CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 997 455789999999999999 999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
|++++++
T Consensus 281 ~~~al~l 287 (474)
T 4abn_A 281 FSQAAAL 287 (474)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999988
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=3.5e-17 Score=169.35 Aligned_cols=245 Identities=15% Similarity=0.049 Sum_probs=177.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+|....-+...|..++ ..|++.+|+..|++++.++|.+..++..+|.++..+|+|++|+..|++++. ..|.+..
T Consensus 95 ~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 168 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQA---ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK---QNPKYKY 168 (365)
T ss_dssp CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCHHHHC
T ss_pred CcCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCccchH
Confidence 3444555556666555 579999999999999999999999999999999999999999999999763 3332221
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHH---HHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLK---KKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
........ ..++. .....+....+.. +-+...+..+++......|+.+|.+|..+|++
T Consensus 169 ~~~~~~~~-------~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 169 LVKNKKGS-------PGLTR------------RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp C--------------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH
T ss_pred HHhhhccc-------hHHHH------------HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH
Confidence 11000000 00000 0000001111111 11222233344422455788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+..|++++++. |++..+...+ |..++.
T Consensus 230 ~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------~~~~~~ 259 (365)
T 4eqf_A 230 NRAIDAFNAALTVR--------------------------------------PEDYSLWNRL------------GATLAN 259 (365)
T ss_dssp HHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHH
Confidence 99999999999873 4444433333 999999
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------cHHHHHHHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS------------CIQALDTRA 323 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~------------~~~A~~~ra 323 (580)
.|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|+ +..+|..++
T Consensus 260 ~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEI-----QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 99999999999999997 3457899999999999999999999999999999987 467899999
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al 343 (580)
.++..+|+++.+...+++.+
T Consensus 335 ~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHcCcHHHHHHHHHhhH
Confidence 99999999999887776653
No 34
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.76 E-value=1e-16 Score=176.56 Aligned_cols=221 Identities=15% Similarity=0.075 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|++++|+..|++++.+ |.+..++..+|.++...|++++|+..|++++ +..|++..... .+ ...+
T Consensus 284 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~------~l----~~~~ 349 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL---EIDPYNLDVYP------LH----LASL 349 (597)
T ss_dssp THHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCCTTHH------HH----HHHH
T ss_pred CcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HcCcccHHHHH------HH----HHHH
Confidence 568888888888888887 6778888888888888888888888888855 34444332211 00 0000
Q ss_pred -cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 118 -HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
..+ ...+....+...+... ......|+.+|.+|+..|++++|+..|++++++.
T Consensus 350 ~~~g-----------------~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 403 (597)
T 2xpi_A 350 HESG-----------------EKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD------- 403 (597)
T ss_dssp HHHT-----------------CHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHhC-----------------CHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------
Confidence 000 0000000000111111 2234567789999999999999999999998762
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
|+.......+ |..+.+.|++++|+..|.+++..
T Consensus 404 -------------------------------~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~---- 436 (597)
T 2xpi_A 404 -------------------------------PQFGPAWIGF------------AHSFAIEGEHDQAISAYTTAARL---- 436 (597)
T ss_dssp -------------------------------TTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred -------------------------------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3333333332 89999999999999999999997
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.+..+++++|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+..|++++++.
T Consensus 437 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 437 -FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp -TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 334678999999999999999999999999999999999999999999999999999999999998885
No 35
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=3.4e-17 Score=177.54 Aligned_cols=249 Identities=13% Similarity=0.096 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
+....++..|..++ ..|++.+|+..|++++.++|.++.++..+|.+++.+|+|++|+..|++++ ...|++
T Consensus 23 ~~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~---- 92 (537)
T 3fp2_A 23 AYAVQLKNRGNHFF---TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL---EIKPDH---- 92 (537)
T ss_dssp HHHHHHHHHHHHHH---HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTC----
T ss_pred HHHHHHHHHHHHHH---HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCch----
Confidence 35677889998888 68999999999999999999999999999999999999999999999966 222211
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
...++.+|.++..+|++++|+.
T Consensus 93 ----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 93 ----------------------------------------------------------SKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 2357889999999999999999
Q ss_pred HHHHHHHHHHHhhhhh-------------------hcccCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCC
Q 008039 181 LLQTGKRLATAAFRRE-------------------SISLSDDSFPFSKFPV------------SNNHQTPPATPPRTMTE 229 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~-------------------~~~~~~d~~~~~~l~~------------~~~~~~~~~~~~~~dPd 229 (580)
.|+ ++.+.+...... .+....+.. ...++. ..............++.
T Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (537)
T 3fp2_A 115 DLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG-SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192 (537)
T ss_dssp HHH-HHC-----------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSS
T ss_pred HHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-ccccchHhHHHHHHHhcChHHHHHHHhhccccccH
Confidence 995 655433210000 000000000 000000 00000000000011111
Q ss_pred hHHHHH-------------------------HHHHH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 230 SESVSQ-------------------------LLSHI------------KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 230 ~~~~~~-------------------------ll~~~------------k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
...... .+..+ .....+...|..++..|++++|+..|.+++.+
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 111111 11110 01223456688999999999999999999997
Q ss_pred cCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 273 RRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 273 ~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|. ..+++++|.++...|++++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 273 -----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 273 -----HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp -----CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333 7889999999999999999999999999999999999999999999999999999999999887
No 36
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.74 E-value=7.7e-17 Score=156.04 Aligned_cols=171 Identities=11% Similarity=0.073 Sum_probs=144.8
Q ss_pred CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcc
Q 008039 56 SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFK 135 (580)
Q Consensus 56 ~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 135 (580)
.|.++.++..+|.+++..|+|++|+..|++++. ..|. .
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~------------------------~--------------- 40 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLK---LTNN------------------------Q--------------- 40 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTT------------------------C---------------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHh---ccCC------------------------C---------------
Confidence 356779999999999999999999999999662 2210 0
Q ss_pred cccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCC
Q 008039 136 CFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNN 215 (580)
Q Consensus 136 ~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~ 215 (580)
..+.++.+|.+++.+|++++|+..|++++++.
T Consensus 41 ----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------------------- 72 (228)
T 4i17_A 41 ----------------------DSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------------------------- 72 (228)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------
T ss_pred ----------------------CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------------------------
Confidence 01356679999999999999999999999762
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccH-------HHHHHH
Q 008039 216 HQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLA-------ECYMHR 288 (580)
Q Consensus 216 ~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a-------~~~~nr 288 (580)
|+...+...+ |.+++..|+|++|+..|.+++.+ .| .+. .+|+++
T Consensus 73 ------------p~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~-~p----~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 73 ------------YNLANAYIGK------------SAAYRDMKNNQEYIATLTEGIKA-VP----GNATIEKLYAIYYLKE 123 (228)
T ss_dssp ------------CSHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH-ST----TCHHHHHHHHHHHHHH
T ss_pred ------------cchHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHH-CC----CcHHHHHHHHHHHHHH
Confidence 5544444333 99999999999999999999997 23 344 679999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCCh---------------------------hHHHHHH
Q 008039 289 AFAYRSSGRIAESIADCNKTLALEPS--CIQALDTRALLLETIRCL---------------------------PDCLHDL 339 (580)
Q Consensus 289 a~a~~~lg~~~eAl~~~~~Al~ldP~--~~~A~~~ra~~~~~lg~~---------------------------~eAi~~~ 339 (580)
|.++..+|++++|+..|.++++++|+ ++.+++.+|.++..+|+. ++|+..|
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 203 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYL 203 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999998 8888888
Q ss_pred HHHHHH
Q 008039 340 EHLKLL 345 (580)
Q Consensus 340 ~~al~l 345 (580)
++++++
T Consensus 204 ~~a~~l 209 (228)
T 4i17_A 204 GEAVTL 209 (228)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 888877
No 37
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.74 E-value=3.3e-16 Score=172.49 Aligned_cols=235 Identities=15% Similarity=0.086 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
+...+..+. ..|++.+|+..|++++..+|.+..++..+|.+|...|++++|++.|++++ +..|.+....
T Consensus 342 ~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~----- 410 (597)
T 2xpi_A 342 YPLHLASLH---ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS---TMDPQFGPAW----- 410 (597)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHH-----
T ss_pred HHHHHHHHH---HhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH---HhCCCCHHHH-----
Confidence 444444444 46677777777777777777777777777777777777777777777754 2333222000
Q ss_pred hhHhHHHHHhhhc-CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLH-SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 106 ~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
...+..+. .+ ...+..+-+-..+...+ .....|+.+|.+|...|++++|+..|++
T Consensus 411 -----~~l~~~~~~~g-----------------~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 411 -----IGFAHSFAIEG-----------------EHDQAISAYTTAARLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp -----HHHHHHHHHHT-----------------CHHHHHHHHHHHHHTTT--TCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHcC-----------------CHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00000000 00 00000000001111111 1234577899999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
++++. |++..+...+ |..+++.|++++|+.
T Consensus 467 ~~~~~--------------------------------------~~~~~~~~~l------------~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 467 SYALF--------------------------------------QYDPLLLNEL------------GVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHHHC--------------------------------------CCCHHHHHHH------------HHHHHHTTCHHHHHH
T ss_pred HHHhC--------------------------------------CCChHHHHHH------------HHHHHHhCCHHHHHH
Confidence 98762 3333333222 999999999999999
Q ss_pred HHHHHHhccCC-CCCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 265 HFSKIVDGRRG-APQGFL-AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 265 ~y~~AL~~~~~-~~~~~~-a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.|.++++..+. ...|.. ..+|.++|.++...|++++|+..++++++++|+++.+|+.+|.+|...|++++|+..|+++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999986310 112333 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 008039 343 KLL 345 (580)
Q Consensus 343 l~l 345 (580)
+++
T Consensus 577 l~~ 579 (597)
T 2xpi_A 577 LAI 579 (597)
T ss_dssp HHH
T ss_pred Hhc
Confidence 988
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=1.1e-16 Score=173.48 Aligned_cols=237 Identities=14% Similarity=0.103 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
..-+...+..++ ..|++.+|+..|.+++.++|. ..++..+|.+++.+|++++|+..|++++ ...|.+...
T Consensus 243 ~~~~~~~g~~~~---~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~--- 312 (537)
T 3fp2_A 243 ALALCYTGIFHF---LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV---DLNPEYPPT--- 312 (537)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH---HHCTTCHHH---
T ss_pred HHHHHHHHHHHH---hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh---ccCCCCHHH---
Confidence 444666666665 578888888888888888888 7888888888888888888888888855 333332210
Q ss_pred CchhhHhHHHHHhhh-cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 103 DSSSQQLSRERVKLL-HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
......++ ..+ ......+-+...+..+++ ....|+.+|.+++.+|++++|+..
T Consensus 313 -------~~~l~~~~~~~~-----------------~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 313 -------YYHRGQMYFILQ-----------------DYKNAKEDFQKAQSLNPE--NVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp -------HHHHHHHHHHTT-----------------CHHHHHHHHHHHHHHCTT--CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHHHHHHHhcC-----------------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00011111 111 000011111111222222 235678899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++.+. |++..+...+ |..++..|+|++
T Consensus 367 ~~~~~~~~--------------------------------------~~~~~~~~~l------------~~~~~~~g~~~~ 396 (537)
T 3fp2_A 367 FNETKLKF--------------------------------------PTLPEVPTFF------------AEILTDRGDFDT 396 (537)
T ss_dssp HHHHHHHC--------------------------------------TTCTHHHHHH------------HHHHHHTTCHHH
T ss_pred HHHHHHhC--------------------------------------CCChHHHHHH------------HHHHHHhCCHHH
Confidence 99998762 3444443333 999999999999
Q ss_pred HHHHHHHHHhccCCCC-CcccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Q 008039 262 AIRHFSKIVDGRRGAP-QGFLAECYMHRAFAYRSS----------GRIAESIADCNKTLALEPSCIQALDTRALLLETIR 330 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~-~~~~a~~~~nra~a~~~l----------g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg 330 (580)
|+..|.+++.+.+... .......++++|.++..+ |++++|+..|++++.++|++..+++.+|.++..+|
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999732111 122345578899999999 99999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 008039 331 CLPDCLHDLEHLKLL 345 (580)
Q Consensus 331 ~~~eAi~~~~~al~l 345 (580)
++++|+..|++++++
T Consensus 477 ~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 477 KIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999999988
No 39
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=5e-16 Score=155.25 Aligned_cols=229 Identities=14% Similarity=0.100 Sum_probs=182.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALAL--------SPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l--------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
-..++..+.-+...+..++ ..|++++|+..|.+++.+ .|....++..+|.++..+|++++|+..|++++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYA---SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456778888888898887 689999999999999995 78888999999999999999999999999977
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
...+.. +.++ .....+.++.+|.
T Consensus 97 ~~~~~~-----------------------~~~~----------------------------------~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 97 AIREKT-----------------------LGKD----------------------------------HPAVAATLNNLAV 119 (311)
T ss_dssp HHHHHH-----------------------HCTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------hCCC----------------------------------ChHHHHHHHHHHH
Confidence 332110 0000 0112346788999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRR 247 (580)
Q Consensus 168 a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k 247 (580)
+|+.+|++++|+..|++++.+....+. .........+...
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~--------------------------------~~~~~~~~~~~~l-------- 159 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLG--------------------------------KDHPDVAKQLNNL-------- 159 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHH--------
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcC--------------------------------CCChHHHHHHHHH--------
Confidence 999999999999999999987422100 0011222333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL------------- 311 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l------------- 311 (580)
|..++..|+|++|+..|.+++.+.. +...+....+++++|.++..+|++++|+..+.+++.+
T Consensus 160 --a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 160 --ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp --HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 9999999999999999999998621 1224567889999999999999999999999999974
Q ss_pred ------------------------------------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 312 ------------------------------------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 312 ------------------------------------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+|....+++.+|.+|..+|++++|+..|++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 57778999999999999999999999999998883
No 40
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.73 E-value=4.9e-17 Score=185.84 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=153.3
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
++|+..+-|...|..+. ..|++++|+..|++||+++|+++.+|.++|.+|..+|++++|++.|+++| +++|++.
T Consensus 4 s~P~~a~al~nLG~~~~---~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKR---EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFA 77 (723)
T ss_dssp --CHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCH
T ss_pred CCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH
Confidence 35777888888898887 78999999999999999999999999999999999999999999999966 3333222
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
..|++||.+|..+|++++
T Consensus 78 --------------------------------------------------------------~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 78 --------------------------------------------------------------DAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHTTCHHH
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHcCCHHH
Confidence 368899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|+++++++ |++..+...+ |.++...|
T Consensus 96 A~~~~~kAl~l~--------------------------------------P~~~~a~~~L------------g~~~~~~g 125 (723)
T 4gyw_A 96 ALQCYTRAIQIN--------------------------------------PAFADAHSNL------------ASIHKDSG 125 (723)
T ss_dssp HHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHTT
T ss_pred HHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHcC
Confidence 999999999883 5555554443 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+|++|+..|+++|++ .|.+..+++|+|.++..+|+|++|++.+.+++++.|+..
T Consensus 126 ~~~eAi~~~~~Al~l-----~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 126 NIPEAIASYRTALKL-----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp CHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-----CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 999999999999998 455899999999999999999999999999999876543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=8.4e-17 Score=158.76 Aligned_cols=203 Identities=15% Similarity=0.041 Sum_probs=165.3
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL----ELALELKARSLLYLRRFKDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~----~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~ 94 (580)
+|....-++..+..++ ..|++.+|+..|++++. .|.+ ..++..+|.++..+|++++|+..|++++ +..|
T Consensus 33 ~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~---~~~~ 105 (272)
T 3u4t_A 33 KYNSPYIYNRRAVCYY---ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV---DRDT 105 (272)
T ss_dssp TCCCSTTHHHHHHHHH---HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHST
T ss_pred CCCcHHHHHHHHHHHH---HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH---hcCc
Confidence 4444444556666665 57999999999999999 4443 3458999999999999999999999966 2322
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL 174 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~ 174 (580)
.+ .+.|+.+|.+|+.+|+
T Consensus 106 ~~--------------------------------------------------------------~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 106 TR--------------------------------------------------------------LDMYGQIGSYFYNKGN 123 (272)
T ss_dssp TC--------------------------------------------------------------THHHHHHHHHHHHTTC
T ss_pred cc--------------------------------------------------------------HHHHHHHHHHHHHccC
Confidence 21 1357889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 175 MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 175 ~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
+++|+..|++++++ +|+...+...+ |..++
T Consensus 124 ~~~A~~~~~~al~~--------------------------------------~~~~~~~~~~l------------~~~~~ 153 (272)
T 3u4t_A 124 FPLAIQYMEKQIRP--------------------------------------TTTDPKVFYEL------------GQAYY 153 (272)
T ss_dssp HHHHHHHHGGGCCS--------------------------------------SCCCHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHhhc--------------------------------------CCCcHHHHHHH------------HHHHH
Confidence 99999999988754 24444443333 85666
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CC-----cHHHHHHHH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR---IAESIADCNKTLALE---PS-----CIQALDTRA 323 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~---~~eAl~~~~~Al~ld---P~-----~~~A~~~ra 323 (580)
..++|++|+..|.+++++ .|.+..+++++|.++..+|+ +++|+..+.+++.+. |+ ...++..+|
T Consensus 154 ~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLEL-----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 778999999999999997 34468999999999999999 999999999999986 55 357999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++..+|++++|+..|++++++
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988
No 42
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.71 E-value=4.2e-16 Score=154.44 Aligned_cols=182 Identities=9% Similarity=-0.006 Sum_probs=147.4
Q ss_pred HHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCC
Q 008039 52 ALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRD 131 (580)
Q Consensus 52 Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 131 (580)
...++|.++..++.+|.+++..|+|++|+..|++++ ...|+++
T Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l---~~~p~~~---------------------------------- 49 (261)
T 3qky_A 7 SGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVF---TYGRTHE---------------------------------- 49 (261)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHG---GGCSCST----------------------------------
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCCCCc----------------------------------
Confidence 456789999999999999999999999999999966 3333221
Q ss_pred CCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCC
Q 008039 132 PSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFP 211 (580)
Q Consensus 132 ~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~ 211 (580)
.....++.+|.+|+.+|++++|+..|++++++.
T Consensus 50 -------------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---------------------- 82 (261)
T 3qky_A 50 -------------------------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY---------------------- 82 (261)
T ss_dssp -------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred -------------------------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----------------------
Confidence 001357889999999999999999999999873
Q ss_pred CCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhccCCCCCcccH
Q 008039 212 VSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALD--------AGLYSEAIRHFSKIVDGRRGAPQGFLA 282 (580)
Q Consensus 212 ~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~--------~g~y~eAi~~y~~AL~~~~~~~~~~~a 282 (580)
|++ .....++.. |.+++. .|+|++|+..|.+++.. .|. .+...
T Consensus 83 ----------------p~~~~~~~a~~~l----------g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~-~~~~~ 134 (261)
T 3qky_A 83 ----------------QIDPRVPQAEYER----------AMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-YPN-HELVD 134 (261)
T ss_dssp ----------------TTCTTHHHHHHHH----------HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-CTT-CTTHH
T ss_pred ----------------CCCchhHHHHHHH----------HHHHHHhcccccccchhHHHHHHHHHHHHHH-CcC-chhHH
Confidence 222 122333333 999999 99999999999999997 343 23334
Q ss_pred HHH--------------HHHHHHHHHcCChHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhc----------CChhHH
Q 008039 283 ECY--------------MHRAFAYRSSGRIAESIADCNKTLALEPS---CIQALDTRALLLETI----------RCLPDC 335 (580)
Q Consensus 283 ~~~--------------~nra~a~~~lg~~~eAl~~~~~Al~ldP~---~~~A~~~ra~~~~~l----------g~~~eA 335 (580)
.++ +++|.+|..+|++++|+..|++++..+|+ ...+++.+|.+|..+ |++++|
T Consensus 135 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 135 DATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 444 89999999999999999999999999998 678999999999988 999999
Q ss_pred HHHHHHHHHH
Q 008039 336 LHDLEHLKLL 345 (580)
Q Consensus 336 i~~~~~al~l 345 (580)
+..|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (261)
T 3qky_A 215 VELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999888
No 43
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.8e-16 Score=170.35 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=182.1
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
++....-+...|..++ ..|++.+|+..|++++.++|. ..++..+|.++..+|++++|+..|++++ ...|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 305 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKF---LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL---KLDSNNSS 305 (514)
T ss_dssp HHHHHHHHHHHHHHHH---HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH---TTCTTCTH
T ss_pred ChHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh---hcCcCCHH
Confidence 4667777888888887 689999999999999999999 9999999999999999999999999965 44443321
Q ss_pred CCCCCchhhHhHHHHHhhh-cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 99 SVSSDSSSQQLSRERVKLL-HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
. ....+.++ ..++ .+ ...+-+...+..++. ....++.+|.+++..|++++
T Consensus 306 ~----------~~~l~~~~~~~~~--------~~---------~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 306 V----------YYHRGQMNFILQN--------YD---------QAGKDFDKAKELDPE--NIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp H----------HHHHHHHHHHTTC--------TT---------HHHHHHHHHHHTCSS--CSHHHHHHHHHTTTTTCHHH
T ss_pred H----------HHHHHHHHHHhCC--------HH---------HHHHHHHHHHHhChh--hHHHHHHHHHHHHHcCCHHH
Confidence 1 00111111 1110 00 111111112222222 34567788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++.+. |+...+...+ |..++..|
T Consensus 357 A~~~~~~~~~~~--------------------------------------~~~~~~~~~l------------a~~~~~~~ 386 (514)
T 2gw1_A 357 CETLFSEAKRKF--------------------------------------PEAPEVPNFF------------AEILTDKN 386 (514)
T ss_dssp HHHHHHHHHHHS--------------------------------------TTCSHHHHHH------------HHHHHHTT
T ss_pred HHHHHHHHHHHc--------------------------------------ccCHHHHHHH------------HHHHHHCC
Confidence 999999988762 3333333222 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCC--cccHHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQ--GFLAECYMHRAFAYRS---SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~--~~~a~~~~nra~a~~~---lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
+|++|+..|.+++... |... .....+++++|.++.. +|++++|+..|.+++.++|++..+++.+|.++..+|++
T Consensus 387 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 387 DFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp CHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence 9999999999999973 3211 1124589999999999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|+..|++++++
T Consensus 466 ~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 466 DEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999988
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=7.6e-16 Score=148.73 Aligned_cols=191 Identities=18% Similarity=0.259 Sum_probs=156.2
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.++....-+...+..++ ..|++.+|+..|.+++.++|.+..++..+|.+++.+|++++|+..|++++. ..|.+
T Consensus 52 ~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~- 124 (243)
T 2q7f_A 52 ENKEDAIPYINFANLLS---SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR---AGMEN- 124 (243)
T ss_dssp TCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTCCS-
T ss_pred hCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCC-
Confidence 35555666777777776 689999999999999999999999999999999999999999999999652 22111
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
...++.+|.+++.+|++++
T Consensus 125 -------------------------------------------------------------~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 125 -------------------------------------------------------------GDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHTSCHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHhccHHH
Confidence 1357789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++.+. |+...+...+ |..++..|
T Consensus 144 A~~~~~~~~~~~--------------------------------------~~~~~~~~~l------------~~~~~~~~ 173 (243)
T 2q7f_A 144 ALPYLQRAVELN--------------------------------------ENDTEARFQF------------GMCLANEG 173 (243)
T ss_dssp HHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHHT
T ss_pred HHHHHHHHHHhC--------------------------------------CccHHHHHHH------------HHHHHHcC
Confidence 999999998762 3333333222 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..++..++.+....+.
T Consensus 174 ~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQ-----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp CCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 999999999999997 344788999999999999999999999999999999999999998887665543
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=6.8e-16 Score=151.95 Aligned_cols=202 Identities=10% Similarity=-0.103 Sum_probs=164.9
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
++....-+...|..++ ..|++.+|+..|++++.++|.++.++..+|.+++.+|+|++|+..|++++ ...|.+
T Consensus 39 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~-- 110 (275)
T 1xnf_A 39 DDERAQLLYERGVLYD---SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTY-- 110 (275)
T ss_dssp HHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTC--
T ss_pred CchhHHHHHHHHHHHH---HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCccc--
Confidence 3456666777777777 68999999999999999999999999999999999999999999999966 222211
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
...|+.+|.+|+.+|++++|
T Consensus 111 ------------------------------------------------------------~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 111 ------------------------------------------------------------NYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp ------------------------------------------------------------THHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------------------------------------------cHHHHHHHHHHHHhccHHHH
Confidence 13678899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
+..|++++++. |+....... ...++..|+
T Consensus 131 ~~~~~~a~~~~--------------------------------------~~~~~~~~~-------------~~~~~~~~~ 159 (275)
T 1xnf_A 131 QDDLLAFYQDD--------------------------------------PNDPFRSLW-------------LYLAEQKLD 159 (275)
T ss_dssp HHHHHHHHHHC--------------------------------------TTCHHHHHH-------------HHHHHHHHC
T ss_pred HHHHHHHHHhC--------------------------------------CCChHHHHH-------------HHHHHHhcC
Confidence 99999999873 333332222 233466799
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhcCChhH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALDTRALLLETIRCLPD 334 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~~ra~~~~~lg~~~e 334 (580)
+++|+..|.+++... |. ... ..+++.++...+++++|+..+.+++..+|.. ..+++.+|.++..+|++++
T Consensus 160 ~~~A~~~~~~~~~~~-~~----~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS-DK----EQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHHHHHHHHHHHHS-CC----CST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcC-Cc----chH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 999999999999963 32 222 3457888889999999999999999988754 7999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008039 335 CLHDLEHLKLL 345 (580)
Q Consensus 335 Ai~~~~~al~l 345 (580)
|+..|++++++
T Consensus 234 A~~~~~~al~~ 244 (275)
T 1xnf_A 234 ATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999999766
No 46
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.70 E-value=2.1e-16 Score=160.38 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPR------LELALELKARSLLYLRRFKDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~------~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~ 94 (580)
+....++..+-.++ ...|++++|+..|.+|+++.+. .+.++.++|.+|..+|+|++|+.+|++++......+
T Consensus 34 ~~A~~~~~~a~~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 34 EEAADLCVQAATIY--RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHHHHHHHHH--HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 33444555554443 2579999999999999998542 367899999999999999999999999773211100
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc-C
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL-G 173 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l-G 173 (580)
+. ......|..+|.+|... |
T Consensus 112 -~~----------------------------------------------------------~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 112 -QF----------------------------------------------------------RRGANFKFELGEILENDLH 132 (292)
T ss_dssp -CH----------------------------------------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred -CH----------------------------------------------------------HHHHHHHHHHHHHHHHhhc
Confidence 00 00123578899999995 9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHH
Q 008039 174 LMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 174 ~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G~~ 252 (580)
++++|+.+|++++++.+.. .+... ...+... |..
T Consensus 133 ~~~~A~~~~~~Al~~~~~~-----------------------------------~~~~~~~~~~~~l----------g~~ 167 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQD-----------------------------------QSVALSNKCFIKC----------ADL 167 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHHH----------HHH
T ss_pred CHHHHHHHHHHHHHHHHhC-----------------------------------CChHHHHHHHHHH----------HHH
Confidence 9999999999999986420 11111 1222223 999
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCc---ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH-----HHHHHH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQG---FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA-----LDTRAL 324 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~---~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A-----~~~ra~ 324 (580)
++..|+|++|+.+|.+++.+. |.... ....+|+++|.|+..+|++++|+..|++++.++|++..+ +..++.
T Consensus 168 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~ 246 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLID 246 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 999999999999999999973 32221 224578999999999999999999999999999998764 455666
Q ss_pred HHH--hcCChhHHHHHHHHHHHH
Q 008039 325 LLE--TIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~--~lg~~~eAi~~~~~al~l 345 (580)
++. ..+++++|+..|++++.+
T Consensus 247 ~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 247 AVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHcCCHHHHHHHHHHhccCCcc
Confidence 665 567899999999888444
No 47
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.70 E-value=2.4e-16 Score=145.93 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC--------CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA--------PQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~--------~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
+.+.....++..|+.+++.|+|++|+..|+++|+++ |. ..|..+.+|+|+|.|+.++|+|++|+.+|++||
T Consensus 6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445566777888999999999999999999999984 43 112345599999999999999999999999999
Q ss_pred hc-------CCCcHHHH----HHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 310 AL-------EPSCIQAL----DTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 310 ~l-------dP~~~~A~----~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
++ +|++.++| +++|.++..+|+|++|+.+|++++++.
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99 99999999 999999999999999999999999995
No 48
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.70 E-value=2.6e-16 Score=151.56 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHccChHHHHHHHH
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALEL----------------KARSLLYLRRFKDVADMLQ 84 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~----------------rA~~l~~l~r~~eAi~~~~ 84 (580)
+.++.++..|..++ ..|++.+|+..|++++.++|.++.++.. +|.++..+|+|++|+..|+
T Consensus 2 ~~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 2 QSVDEMLQKVSAAI---EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp -CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35778889998888 7899999999999999999999999999 9999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHH
Q 008039 85 DYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLV 164 (580)
Q Consensus 85 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~ 164 (580)
+++ +..|++. ..|+.
T Consensus 79 ~al---~~~p~~~--------------------------------------------------------------~~~~~ 93 (208)
T 3urz_A 79 ELL---QKAPNNV--------------------------------------------------------------DCLEA 93 (208)
T ss_dssp HHH---HHCTTCH--------------------------------------------------------------HHHHH
T ss_pred HHH---HHCCCCH--------------------------------------------------------------HHHHH
Confidence 965 3333221 36788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
+|.+++.+|++++|+..|++++++. |++..+...+
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~--------------------------------------P~~~~a~~~l------- 128 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLE--------------------------------------ADNLAANIFL------- 128 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--------------------------------------CCCHHHHHHH-------
Confidence 9999999999999999999999873 5555554444
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 245 RRRTAAIAALDAGL--YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 245 ~~k~~G~~~~~~g~--y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
|..++..|+ +..++..|.+++.. .+ ....++++|.++..+|+|++|+.+|+++|+++|+.
T Consensus 129 -----g~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 129 -----GNYYYLTAEQEKKKLETDYKKLSSP-----TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHC---CC-----CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -----HHHHHHHhHHHHHHHHHHHHHHhCC-----Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 878776654 56677888887653 11 34578889999999999999999999999999974
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=3.5e-16 Score=164.02 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=176.7
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
+.....++..|..++ ..|++.+|+..|++++.++|.+. .++..+|.+++.+|+|++|+..|++++...+..++
T Consensus 45 ~~~~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 45 SSMCLELALEGERLC---NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 456677778888887 68999999999999999999987 58899999999999999999999997733221100
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
.......++.+|.+|+.+|++
T Consensus 122 -----------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~ 142 (411)
T 4a1s_A 122 -----------------------------------------------------------RLGEAKSSGNLGNTLKVMGRF 142 (411)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------------------------------------------------chHHHHHHHHHHHHHHHCCCH
Confidence 011234678899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+..|++++.+..... ........+.. .|..++.
T Consensus 143 ~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~----------l~~~~~~ 178 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLG----------------------------------DRLSEGRALYN----------LGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----------------------------------chHHHHHHHHH----------HHHHHHH
Confidence 999999999998853210 01122222222 3999999
Q ss_pred cCC-----------------HHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 256 AGL-----------------YSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 256 ~g~-----------------y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
.|+ |++|+..|.+++.+... ...+....++.++|.++..+|++++|+..+.+++.+.|....
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 999 99999999999886211 123446779999999999999999999999999999775543
Q ss_pred ------HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 318 ------ALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 318 ------A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++.+|.++..+|++++|+..|++++.+.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=2.3e-15 Score=143.08 Aligned_cols=174 Identities=11% Similarity=0.071 Sum_probs=148.7
Q ss_pred hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCC
Q 008039 54 ALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPS 133 (580)
Q Consensus 54 ~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 133 (580)
+.+|.++.++..+|.+++..|++++|+..|++++. ..|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~------------------------------------- 41 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALK---SDPKN------------------------------------- 41 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC-------------------------------------
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCccc-------------------------------------
Confidence 35788999999999999999999999999999662 22211
Q ss_pred cccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCC
Q 008039 134 FKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVS 213 (580)
Q Consensus 134 ~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~ 213 (580)
...|+.+|.++...|++++|+..|++++.+.
T Consensus 42 -------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------ 72 (225)
T 2vq2_A 42 -------------------------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------------------ 72 (225)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred -------------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------------------------
Confidence 1357789999999999999999999998762
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 008039 214 NNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA-GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAY 292 (580)
Q Consensus 214 ~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~-g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~ 292 (580)
|+...+...+ |..++.. |++++|+..|.+++.. +. .+....+++++|.++
T Consensus 73 --------------~~~~~~~~~l------------~~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 73 --------------PDSAEINNNY------------GWFLCGRLNRPAESMAYFDKALAD--PT-YPTPYIANLNKGICS 123 (225)
T ss_dssp --------------TTCHHHHHHH------------HHHHHTTTCCHHHHHHHHHHHHTS--TT-CSCHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHH------------HHHHHHhcCcHHHHHHHHHHHHcC--cC-CcchHHHHHHHHHHH
Confidence 3333333222 8999999 9999999999999992 22 455789999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 293 RSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 293 ~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+|++++|+..+.+++..+|++..+++.+|.++..+|++++|+..|++++++
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887
No 51
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.69 E-value=1.9e-15 Score=158.33 Aligned_cols=212 Identities=13% Similarity=0.046 Sum_probs=162.7
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 29 DARTLIATQEHSEIASALSLLDAALAL------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 29 ~~~~~~~~~~~~d~~~Al~~~~~Al~l------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
.|..++ ..|++.+|+..|.+|+.+ .|..+.++..+|.++..+|++++|+..+++++...+..++.
T Consensus 109 ~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~------ 179 (383)
T 3ulq_A 109 RGMYEL---DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY------ 179 (383)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT------
T ss_pred HHHHHH---HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc------
Confidence 666665 679999999999999998 33456889999999999999999999999977432221100
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
.....+.+..+|.+|..+|++++|+..|
T Consensus 180 ----------------------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 207 (383)
T 3ulq_A 180 ----------------------------------------------------NIRLLQCHSLFATNFLDLKQYEDAISHF 207 (383)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------------------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 0011246788999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
++++.+.+.. ++. ..+..+.. .|..++..|+|++
T Consensus 208 ~~al~~~~~~-----------------------------------~~~~~~~~~~~~----------lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 208 QKAYSMAEAE-----------------------------------KQPQLMGRTLYN----------IGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHHT-----------------------------------TCHHHHHHHHHH----------HHHHHHHTTCHHH
T ss_pred HHHHHHHHHc-----------------------------------CChHHHHHHHHH----------HHHHHHHCCCHHH
Confidence 9999885420 111 12222333 3999999999999
Q ss_pred HHHHHHHHHhccCCCCC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCc--------------------
Q 008039 262 AIRHFSKIVDGRRGAPQ-GFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSC-------------------- 315 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~-~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~-------------------- 315 (580)
|+.+|.+++.+...... +..+.+++++|.++..+|++++|+..+.+++.+ +|..
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999996322223 667899999999999999999999999999987 3322
Q ss_pred ----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 ----------------IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ----------------~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.+|..+|++++|+..|++++++.
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3356677888888888888888888887774
No 52
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.68 E-value=1.5e-15 Score=154.10 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHHHHhh-------C---hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhh
Q 008039 22 IVDKYIRDARTLIATQ-------E---HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLK 91 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~-------~---~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~ 91 (580)
...+++++|...+.+. . .+++++|+..|+++ |.++..+|+|++|+++|++++....
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~ 68 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQK 68 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3456666666655321 1 33699999999998 6678899999999999999773211
Q ss_pred hcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh
Q 008039 92 MANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH 171 (580)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~ 171 (580)
... + .......|..+|.+|..
T Consensus 69 ~~~-~----------------------------------------------------------~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 69 KAG-N----------------------------------------------------------EDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HTT-C----------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HhC-C----------------------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 100 0 00112468899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHH
Q 008039 172 LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 172 lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G 250 (580)
+|++++|+.+|++++.+.+.. .+... +..+. ..|
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~-----------------------------------g~~~~~a~~~~----------~lg 124 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHR-----------------------------------GQFRRGANFKF----------ELG 124 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHH----------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHH----------HHH
Confidence 999999999999999985420 11111 22222 339
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhccCCCCC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH-------HHHH
Q 008039 251 IAALDA-GLYSEAIRHFSKIVDGRRGAPQ-GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ-------ALDT 321 (580)
Q Consensus 251 ~~~~~~-g~y~eAi~~y~~AL~~~~~~~~-~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~-------A~~~ 321 (580)
.++... |+|++|+.+|.+++.+.+.... .....++.++|.++..+|+|++|+..|++++.++|++.. ++++
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 9999999999999997421111 123578999999999999999999999999999987643 6899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++..+|++++|+..|++++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999776
No 53
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=7e-15 Score=134.88 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=142.9
Q ss_pred cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccccc
Q 008039 59 LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFS 138 (580)
Q Consensus 59 ~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 138 (580)
...++..+|.+++..|++++|+..|++++. ..|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~------------------------------------------- 40 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD---ADAF------------------------------------------- 40 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC---TTSC-------------------------------------------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCcc-------------------------------------------
Confidence 356788899999999999999999998551 1110
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT 218 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~ 218 (580)
..+.++.+|.+++..|++++|+..|++++.+.
T Consensus 41 -------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------- 72 (186)
T 3as5_A 41 -------------------DVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------------------- 72 (186)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred -------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------
Confidence 12357789999999999999999999998762
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCCh
Q 008039 219 PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI 298 (580)
Q Consensus 219 ~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~ 298 (580)
|+...+...+ |..++..|++++|+..|.+++.. .|....+++++|.++..+|++
T Consensus 73 ---------~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 73 ---------PDNVKVATVL------------GLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRF 126 (186)
T ss_dssp ---------TTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------CCCHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcH
Confidence 3333333222 88999999999999999999997 344788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 299 AESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 299 ~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
++|+..+.+++..+|+++.+++.+|.++..+|++++|+..|++++++.
T Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999998884
No 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.67 E-value=1.7e-15 Score=148.65 Aligned_cols=207 Identities=15% Similarity=0.099 Sum_probs=159.0
Q ss_pred hhhHHHHHHHHHHHHhc-------C-CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhH
Q 008039 39 HSEIASALSLLDAALAL-------S-PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLS 110 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l-------~-P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 110 (580)
.|++.+|+..|++|+++ + |....++..+|.+++.+|+|++|+..|++++...+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------- 76 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT----------------- 76 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------------
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-----------------
Confidence 45566666666666652 3 7788999999999999999999999999977332111
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008039 111 RERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 111 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~ 190 (580)
+.++ +......+..+|.+|+.+|++++|+..|++++.+..
T Consensus 77 ------~~~~----------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 77 ------LGKD----------------------------------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp ------TCTT----------------------------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ------cCCc----------------------------------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 0000 011234678899999999999999999999998743
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008039 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE-SESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKI 269 (580)
Q Consensus 191 ~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd-~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~A 269 (580)
... .++ +.....+... |..++..|+|++|+..|.++
T Consensus 117 ~~~---------------------------------~~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 117 KVL---------------------------------GKFHPDVAKQLNNL----------ALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHH---------------------------------CTTCHHHHHHHHHH----------HHHHHTTTCHHHHHHHHHHH
T ss_pred HHc---------------------------------CCCChHHHHHHHHH----------HHHHHHcCCHHHHHHHHHHH
Confidence 210 011 2333333333 99999999999999999999
Q ss_pred Hhcc---CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------
Q 008039 270 VDGR---RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----------------------------------- 311 (580)
Q Consensus 270 L~~~---~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----------------------------------- 311 (580)
+.+. .+...+....++.++|.++..+|++++|+..+.+++.+
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 9861 11224567889999999999999999999999999986
Q ss_pred --------------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 312 --------------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 312 --------------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|....++..+|.+|..+|++++|+..|++++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566789999999999999999999999999754
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.5e-15 Score=157.72 Aligned_cols=218 Identities=10% Similarity=0.085 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
....++..|..++ ..|++.+|+..|++++.+.|.++ .++..+|.+++.+|+|++|+..|++++...+..++
T Consensus 8 ~~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 82 (406)
T 3sf4_A 8 SCLELALEGERLC---KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-- 82 (406)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHH---HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--
Confidence 4455677888877 68999999999999999999984 67889999999999999999999997733211100
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
.....+.++.+|.+|+.+|++++
T Consensus 83 ---------------------------------------------------------~~~~~~~~~~la~~~~~~g~~~~ 105 (406)
T 3sf4_A 83 ---------------------------------------------------------QLGEAKASGNLGNTLKVLGNFDE 105 (406)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------------------------------------------cHHHHHHHHHHHHHHHHcCCHHH
Confidence 01113467889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDA 256 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~ 256 (580)
|+..|++++.+.+.. ++. ..+..+. ..|..++..
T Consensus 106 A~~~~~~al~~~~~~-----------------------------------~~~~~~~~~~~----------~l~~~~~~~ 140 (406)
T 3sf4_A 106 AIVCCQRHLDISREL-----------------------------------NDKVGEARALY----------NLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHHHHHHH-----------------------------------TCHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----------------------------------ccccchHHHHH----------HHHHHHHHc
Confidence 999999999886431 111 1122222 339999999
Q ss_pred CC--------------------HHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 257 GL--------------------YSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 257 g~--------------------y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
|+ |++|+..|.+++.+... ...+....++.++|.++..+|++++|+..+.+++.+.|..
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 99999999999886321 2234567899999999999999999999999999986654
Q ss_pred H------HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 I------QALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ~------~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
. .++..+|.++..+|++++|+..|++++++.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3 399999999999999999999999999885
No 56
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.6e-14 Score=154.44 Aligned_cols=196 Identities=14% Similarity=-0.007 Sum_probs=155.0
Q ss_pred ChhhHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 38 EHSEIASALSLLDAALAL---------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l---------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
..|++++|++.|++|+++ +|.....|.++|.+|..+|+|++|+.+|++++...+..+...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~----------- 131 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY----------- 131 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-----------
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-----------
Confidence 579999999999999987 788899999999999999999999999999763322211000
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL--GLMEDAMVLLQTGK 186 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l--G~~eeAi~~l~~al 186 (580)
.......+..+|.++... +++++|+.+|++++
T Consensus 132 ----------------------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal 165 (472)
T 4g1t_A 132 ----------------------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165 (472)
T ss_dssp ----------------------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred ----------------------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 001112466677777655 56999999999999
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH---HHHcCCHHHHH
Q 008039 187 RLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA---ALDAGLYSEAI 263 (580)
Q Consensus 187 ~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~---~~~~g~y~eAi 263 (580)
++. |++..+...+ |.. +...+++++|+
T Consensus 166 ~~~--------------------------------------p~~~~~~~~~------------~~~~~~l~~~~~~~~al 195 (472)
T 4g1t_A 166 EKK--------------------------------------PKNPEFTSGL------------AIASYRLDNWPPSQNAI 195 (472)
T ss_dssp HHS--------------------------------------TTCHHHHHHH------------HHHHHHHHHSCCCCCTH
T ss_pred HhC--------------------------------------CCCHHHHHHH------------HHHHHHhcCchHHHHHH
Confidence 873 5555554433 444 34568889999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 264 RHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS----GRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 264 ~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l----g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
..|.+++++ .|.+..++.++|.++..+ |++++|+..+++++.++|++..++..+|.+|...|++++|+..|
T Consensus 196 ~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 196 DPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp HHHHHHHHH-----CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhc-----CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 999999998 345778888888877665 57889999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 008039 340 EHLKLL 345 (580)
Q Consensus 340 ~~al~l 345 (580)
++++++
T Consensus 271 ~~al~~ 276 (472)
T 4g1t_A 271 KKALEY 276 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999887
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=2.3e-14 Score=142.40 Aligned_cols=193 Identities=10% Similarity=0.011 Sum_probs=150.8
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhhhhhhcCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLY----LRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
+....-++..|..++ ..|++++|+..|.++++ |.++.++..+|.++.. .+++++|+..|++++.. .
T Consensus 3 ~~~~~a~~~lg~~~~---~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~-- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSY---KEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---N-- 72 (273)
T ss_dssp --CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T--
T ss_pred CCChHHHHHHHHHHH---hCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---C--
Confidence 344566777887777 57899999999999999 8889999999999999 99999999999996621 0
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh----
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH---- 171 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~---- 171 (580)
....++.+|.+|..
T Consensus 73 --------------------------------------------------------------~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 73 --------------------------------------------------------------YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHHHHTSSS
T ss_pred --------------------------------------------------------------CHHHHHHHHHHHhCCCCc
Confidence 01357778888888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 172 LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 172 lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
.|++++|+.+|++++.+. +..+ ++.. |.
T Consensus 91 ~~~~~~A~~~~~~a~~~~----------------------------------------~~~a--~~~l----------g~ 118 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK----------------------------------------YAEG--CASL----------GG 118 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT----------------------------------------CHHH--HHHH----------HH
T ss_pred ccCHHHHHHHHHHHHHcC----------------------------------------CccH--HHHH----------HH
Confidence 888888888888887541 1122 2222 77
Q ss_pred HHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 252 AALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 252 ~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
.+.. .+++++|+..|.++++.. ...+++++|.+|.. .+++++|+..+.++++. +++.+++.+|
T Consensus 119 ~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 189 (273)
T 1ouv_A 119 IYHDGKVVTRDFKKAVEYFTKACDLN-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAG 189 (273)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 8888 888888888888888852 46678888888888 88888888888888877 4578888888
Q ss_pred HHHHh----cCChhHHHHHHHHHHHH
Q 008039 324 LLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 324 ~~~~~----lg~~~eAi~~~~~al~l 345 (580)
.+|.. .+++++|+..|++++++
T Consensus 190 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 190 NMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 88888 88888888888888655
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=1.9e-15 Score=151.54 Aligned_cols=217 Identities=10% Similarity=0.087 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
...++..|..++ ..|++.+|+..|++++.++|.++ .++..+|.+++.+|+|++|+..+++++...+..++
T Consensus 5 ~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 78 (338)
T 3ro2_A 5 CLELALEGERLC---KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD--- 78 (338)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHH---HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc---
Confidence 456677787777 68999999999999999999984 67889999999999999999999997733211100
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
.......++.+|.+++.+|++++|
T Consensus 79 --------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A 102 (338)
T 3ro2_A 79 --------------------------------------------------------QLGEAKASGNLGNTLKVLGNFDEA 102 (338)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------------------------------------------cHHHHHHHHHHHHHHHHccCHHHH
Confidence 011134678899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE-SVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~-~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
+..|++++++.+.. ++.. .+..+. ..|..++..|
T Consensus 103 ~~~~~~al~~~~~~-----------------------------------~~~~~~~~~~~----------~l~~~~~~~~ 137 (338)
T 3ro2_A 103 IVCCQRHLDISREL-----------------------------------NDKVGEARALY----------NLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----------------------------------cCchHHHHHHH----------HHHHHHHHcC
Confidence 99999999885420 1111 122222 3399999999
Q ss_pred C--------------------HHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-
Q 008039 258 L--------------------YSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC- 315 (580)
Q Consensus 258 ~--------------------y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~- 315 (580)
+ |++|+..|.+++.+... ...+....++.++|.++..+|++++|+..+.+++.+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 9 99999999999886211 1234467799999999999999999999999999886543
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 -----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 -----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999885
No 59
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.2e-15 Score=142.67 Aligned_cols=177 Identities=11% Similarity=0.066 Sum_probs=146.9
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccc
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCF 137 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 137 (580)
..+..+..+|.+++..|+|++|+..|++++.. . .
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~-~------------------------------------------ 36 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL---H-K------------------------------------------ 36 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S-C------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---h-c------------------------------------------
Confidence 45678999999999999999999999997622 1 0
Q ss_pred cchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 138 SVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 138 ~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
....|+.+|.+++.+|++++|+..|++++.+.+..
T Consensus 37 --------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------- 71 (258)
T 3uq3_A 37 --------------------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------------------- 71 (258)
T ss_dssp --------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------------------
T ss_pred --------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-------------------------
Confidence 01357889999999999999999999999886430
Q ss_pred CCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC--------------------
Q 008039 218 TPPATPPRTMTESES-VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA-------------------- 276 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~-------------------- 276 (580)
.|+... ...+... |..++..|+|++|+..|.+++.+. +.
T Consensus 72 ---------~~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 72 ---------RADYKVISKSFARI----------GNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp ---------TCCHHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccchHHHHHHHHHH----------HHHHHHcccHHHHHHHHHHHHhcC-chhHHHHHHhHHHHHHHHHHHH
Confidence 012211 2222223 889999999999999999998842 21
Q ss_pred --CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 277 --PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 277 --~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..|....+++++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 256688999999999999999999999999999999999999999999999999999999999999887
No 60
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=1.1e-14 Score=148.23 Aligned_cols=220 Identities=12% Similarity=0.031 Sum_probs=152.7
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 29 DARTLIATQEHSEIASALSLLDAALALSPRLE-LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 29 ~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~-~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
.++.+| ..|+|..|+..+++....+|.+. .+...++++|+.+|++++|+..++.. .|.+. .
T Consensus 5 ~~~~~~---~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~~~---------~ 66 (291)
T 3mkr_A 5 DVKNAF---YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------SAPEL---------Q 66 (291)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------SCHHH---------H
T ss_pred HHHHHH---HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------CChhH---------H
Confidence 345556 58899999999999888888874 57788899999999999999866541 11000 0
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
.+ ...+..+....+ ....-+.+-..+....++.....++.+|.++...|++++|+..|++
T Consensus 67 a~-~~la~~~~~~~~----------------~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--- 126 (291)
T 3mkr_A 67 AV-RMFAEYLASHSR----------------RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--- 126 (291)
T ss_dssp HH-HHHHHHHHCSTT----------------HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---
T ss_pred HH-HHHHHHHcCCCc----------------HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---
Confidence 00 011111111100 0000111111122221233345678899999999999999998764
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008039 188 LATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFS 267 (580)
Q Consensus 188 l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~ 267 (580)
|++..+...+ |.++.+.|++++|+..|.
T Consensus 127 ----------------------------------------~~~~~~~~~l------------~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 127 ----------------------------------------GDSLECMAMT------------VQILLKLDRLDLARKELK 154 (291)
T ss_dssp ----------------------------------------CCSHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------------------CCCHHHHHHH------------HHHHHHCCCHHHHHHHHH
Confidence 2223333333 889999999999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHH----HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFA----YRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a----~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
+++... |. .. +.+++.+ +...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++
T Consensus 155 ~~~~~~-p~----~~--~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 155 KMQDQD-ED----AT--LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHC-TT----CH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhC-cC----cH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999972 32 32 2333333 3345899999999999999999999999999999999999999999999998
Q ss_pred HH
Q 008039 344 LL 345 (580)
Q Consensus 344 ~l 345 (580)
++
T Consensus 228 ~~ 229 (291)
T 3mkr_A 228 DK 229 (291)
T ss_dssp HH
T ss_pred Hh
Confidence 88
No 61
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=6.2e-15 Score=143.81 Aligned_cols=175 Identities=10% Similarity=-0.100 Sum_probs=147.9
Q ss_pred HhcCCCc-HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCC
Q 008039 53 LALSPRL-ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRD 131 (580)
Q Consensus 53 l~l~P~~-~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 131 (580)
-..+|.. +.++..+|.+++..|++++|+..|++++. ..|.
T Consensus 29 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~------------------------------------ 69 (252)
T 2ho1_A 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE---IDPS------------------------------------ 69 (252)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHH---HCTT------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCC------------------------------------
Confidence 4567776 88999999999999999999999999662 2111
Q ss_pred CCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCC
Q 008039 132 PSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFP 211 (580)
Q Consensus 132 ~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~ 211 (580)
....|+.+|.+++..|++++|+..|++++++.
T Consensus 70 --------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------------------- 101 (252)
T 2ho1_A 70 --------------------------SADAHAALAVVFQTEMEPKLADEEYRKALASD---------------------- 101 (252)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred --------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------
Confidence 12357889999999999999999999998762
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q 008039 212 VSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFA 291 (580)
Q Consensus 212 ~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a 291 (580)
|+...+...+ |..++..|+|++|+..|.+++.. +. .+....+++++|.+
T Consensus 102 ----------------~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 102 ----------------SRNARVLNNY------------GGFLYEQKRYEEAYQRLLEASQD--TL-YPERSRVFENLGLV 150 (252)
T ss_dssp ----------------TTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHTTC--TT-CTTHHHHHHHHHHH
T ss_pred ----------------cCcHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHhC--cc-CcccHHHHHHHHHH
Confidence 3333333332 89999999999999999999981 11 45688999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 292 YRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 292 ~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+|++++|+..+.+++.++|.+..+++.+|.++..+|++++|+..|++++++
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999665
No 62
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.65 E-value=2.5e-15 Score=133.53 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
++.|+.+++.|+|++|+..|+++|++ .|.++.+|+++|.||..+|++++|+.+|+++|+++|+++.+|+++|.++
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34499999999999999999999998 4558999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l 345 (580)
..+|++++|+.+|++++++
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=5.2e-15 Score=153.63 Aligned_cols=143 Identities=15% Similarity=0.055 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLL 237 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll 237 (580)
.+.+..+|.+|+.+|++++|+..|++++.+.+.. ++. .....+.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------------------~~~~~~~~~~~ 231 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-----------------------------------GDKAAERRAYS 231 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-----------------------------------CCcHHHHHHHH
Confidence 3467889999999999999999999999885420 111 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC- 315 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~- 315 (580)
. .|..++..|+|++|+..|.+++.+.+. ........++.++|.++..+|++++|+..+.+++.+.+..
T Consensus 232 ~----------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 232 N----------LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp H----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred H----------HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 3 399999999999999999999987321 1123347899999999999999999999999999986544
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 -----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 -----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7799999999999999999999999999885
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=5.8e-14 Score=139.50 Aligned_cols=190 Identities=11% Similarity=-0.001 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHhhC----hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhhhhhhcC
Q 008039 23 VDKYIRDARTLIATQE----HSEIASALSLLDAALALSPRLELALELKARSLLY----LRRFKDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~----~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~~l~~~~ 94 (580)
..-+...+..+. . .+++++|+..|.++++++ ++.++..+|.++.. .+++++|+..|++++.. .
T Consensus 38 ~~a~~~lg~~~~---~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~- 108 (273)
T 1ouv_A 38 NSGCFNLGVLYY---QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---K- 108 (273)
T ss_dssp HHHHHHHHHHHH---HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T-
T ss_pred HHHHHHHHHHHH---cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---C-
Confidence 344555555555 4 789999999999999996 78999999999999 99999999999996621 0
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh---
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH--- 171 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~--- 171 (580)
....++.+|.+|..
T Consensus 109 ---------------------------------------------------------------~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 109 ---------------------------------------------------------------YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHHHHHHCSS
T ss_pred ---------------------------------------------------------------CccHHHHHHHHHHcCCC
Confidence 01367889999999
Q ss_pred -cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008039 172 -LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 172 -lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G 250 (580)
.|++++|+.+|++++++. +..+. +.. |
T Consensus 126 ~~~~~~~A~~~~~~a~~~~----------------------------------------~~~a~--~~l----------g 153 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN----------------------------------------DGDGC--TIL----------G 153 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT----------------------------------------CHHHH--HHH----------H
T ss_pred cccCHHHHHHHHHHHHhcC----------------------------------------cHHHH--HHH----------H
Confidence 999999999999998651 12222 222 8
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 251 IAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 251 ~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
..+.. .+++++|+..|.++++.. ...+++++|.+|.. .+++++|+..+.++++.+| +.+++.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l 224 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNL 224 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHH
Confidence 88988 999999999999999962 46889999999999 9999999999999999976 8999999
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHH
Q 008039 323 ALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~----lg~~~eAi~~~~~al~l 345 (580)
|.+|.. .+++++|+..|++++++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999999 99999999999999887
No 65
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.63 E-value=1.9e-15 Score=138.17 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.+|.+|+.+|++++|+..|++++++. |++..+...+
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~a~~~l--- 71 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQ--------------------------------------ERDPKAHRFL--- 71 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH---
Confidence 46788999999999999999999999873 5555555444
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCcHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIAD-CNKTLALEPSCIQAL 319 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~-~~~Al~ldP~~~~A~ 319 (580)
|.+++..|+|++|+.+|.++|++ .|.++.+|+++|.++..+|++++|+.. +++|++++|+++.++
T Consensus 72 ---------g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 72 ---------GLLYELEENTDKAVECYRRSVEL-----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred ---------HHHHHHcCchHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 99999999999999999999997 455788999999999999999887765 589999999999999
Q ss_pred HHHHHHHHhcCC
Q 008039 320 DTRALLLETIRC 331 (580)
Q Consensus 320 ~~ra~~~~~lg~ 331 (580)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999999988875
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=3.6e-14 Score=144.70 Aligned_cols=210 Identities=12% Similarity=0.056 Sum_probs=165.9
Q ss_pred chhhhHHHHHHHHHHHHHh----hChhh-------HHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 18 SNRKIVDKYIRDARTLIAT----QEHSE-------IASALSLLDAALA-LSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~----~~~~d-------~~~Al~~~~~Al~-l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.+|..++-|+..+..+... ...|+ +++|+..|++||. ++|++..+|...|.++..+|++++|+..|++
T Consensus 45 ~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 124 (308)
T 2ond_A 45 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 124 (308)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455555666666555421 02355 4899999999999 7999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHH
Q 008039 86 YIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVL 165 (580)
Q Consensus 86 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~L 165 (580)
++ +..|.+. . ..|+.+
T Consensus 125 al---~~~p~~~------------------------------------------------------------~-~~~~~~ 140 (308)
T 2ond_A 125 LL---AIEDIDP------------------------------------------------------------T-LVYIQY 140 (308)
T ss_dssp HH---TSSSSCT------------------------------------------------------------H-HHHHHH
T ss_pred HH---hccccCc------------------------------------------------------------c-HHHHHH
Confidence 66 2222111 0 147788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 166 GQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 166 G~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
|.++...|++++|+..|++++++. |....+ ++..
T Consensus 141 ~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------p~~~~~--~~~~------ 174 (308)
T 2ond_A 141 MKFARRAEGIKSGRMIFKKAREDA--------------------------------------RTRHHV--YVTA------ 174 (308)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTST--------------------------------------TCCTHH--HHHH------
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--------------------------------------CCCHHH--HHHH------
Confidence 999999999999999999998652 222222 1211
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-cHHHHH
Q 008039 246 RRTAAIAALD-AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL---EPS-CIQALD 320 (580)
Q Consensus 246 ~k~~G~~~~~-~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l---dP~-~~~A~~ 320 (580)
+...+. .|++++|+..|+++|.. .|....+|.+++..+..+|++++|+..|++++.. +|+ ....|.
T Consensus 175 ----a~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 175 ----ALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp ----HHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred ----HHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 323222 79999999999999997 3447899999999999999999999999999995 664 788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+..+...|++++|...+++++++.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999998883
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=3.8e-15 Score=156.09 Aligned_cols=215 Identities=12% Similarity=0.049 Sum_probs=168.5
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALAL------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
+...|..++ ..|++.+|+..|++++.+ .|....++..+|.++..+|++++|+..|++++...+...+
T Consensus 89 ~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 161 (411)
T 4a1s_A 89 YSQLGNAYF---YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD---- 161 (411)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc----
Confidence 334444444 469999999999999999 6888899999999999999999999999997733211100
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC-----
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL----- 174 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~----- 174 (580)
.......++.+|.+|..+|+
T Consensus 162 -------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~~~ 186 (411)
T 4a1s_A 162 -------------------------------------------------------RLSEGRALYNLGNVYHAKGKHLGQR 186 (411)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------hHHHHHHHHHHHHHHHHcCcccccc
Confidence 01112467889999999999
Q ss_pred ------------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 008039 175 ------------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL 242 (580)
Q Consensus 175 ------------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~ 242 (580)
+++|+.+|++++.+..... ........+..
T Consensus 187 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~---- 228 (411)
T 4a1s_A 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLG----------------------------------DRGAQGRACGN---- 228 (411)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHH----
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHHH----
Confidence 9999999999988753200 01122222222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------ 315 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------ 315 (580)
.|..++..|+|++|+.+|.+++.+.+. ........+++++|.+|..+|++++|+..+++++.+.|..
T Consensus 229 ------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 229 ------LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 399999999999999999999997321 1122335589999999999999999999999999998754
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998884
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.63 E-value=1.4e-14 Score=151.75 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=163.4
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALS------PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~------P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
++..|...+ ..|++.+|+..|.+|+.+. |..+.++..+|.++..+|++++|+..+++++...+..++..
T Consensus 104 ~~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-- 178 (378)
T 3q15_A 104 LFFRGMYEF---DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS-- 178 (378)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH--
T ss_pred HHHHHHHHH---HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch--
Confidence 334555555 5799999999999999884 34567899999999999999999999999773322111000
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
......+..+|.+|..+|++++|+
T Consensus 179 --------------------------------------------------------~~~~~~~~~lg~~y~~~~~~~~A~ 202 (378)
T 3q15_A 179 --------------------------------------------------------IRTIQSLFVIAGNYDDFKHYDKAL 202 (378)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------hhHHHHHHHHHHHHHHhCCHHHHH
Confidence 011235788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 180 ~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
..|++++.+.... .........+... |.+++..|+|
T Consensus 203 ~~~~~al~~~~~~----------------------------------~~~~~~~~~~~~l----------g~~y~~~~~~ 238 (378)
T 3q15_A 203 PHLEAALELAMDI----------------------------------QNDRFIAISLLNI----------ANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHT----------------------------------TCHHHHHHHHHHH----------HHHHHHHTCH
T ss_pred HHHHHHHHHHHHc----------------------------------CCHHHHHHHHHHH----------HHHHHHCCCH
Confidence 9999999885320 0111222233333 9999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----Cc-------------------
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-----SC------------------- 315 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-----~~------------------- 315 (580)
++|+.+|.+++.+......+....+++++|.++..+|++++|+..+++++.+.+ .+
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999532212455689999999999999999999999999998732 22
Q ss_pred -----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 008039 316 -----------------IQALDTRALLLETIRCLPDCLHDLEHLKLLYNA 348 (580)
Q Consensus 316 -----------------~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~ 348 (580)
...+..+|.+|..+|++++|+..|++++++...
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 235566888888888888888888888877433
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1.7e-14 Score=132.32 Aligned_cols=173 Identities=17% Similarity=0.100 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-++..+..++ ..|++.+|+..|++++.++|.+..++..+|.+++..|++++|+..+++++. ..|.+
T Consensus 7 ~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~----- 75 (186)
T 3as5_A 7 RQVYYRDKGISHA---KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---DAPDN----- 75 (186)
T ss_dssp HHHHHHHHHHHHH---HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC-----
T ss_pred hhHHHHHHHHHHH---HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCC-----
Confidence 3455667777777 689999999999999999999999999999999999999999999999662 21110
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...++.+|.+++..|++++|+..
T Consensus 76 ---------------------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 76 ---------------------------------------------------------VKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHH
Confidence 13577899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++.+. |+...+...+ |..++..|++++
T Consensus 99 ~~~~~~~~--------------------------------------~~~~~~~~~~------------a~~~~~~~~~~~ 128 (186)
T 3as5_A 99 LIKVAEAN--------------------------------------PINFNVRFRL------------GVALDNLGRFDE 128 (186)
T ss_dssp HHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHTTCHHH
T ss_pred HHHHHhcC--------------------------------------cHhHHHHHHH------------HHHHHHcCcHHH
Confidence 99998762 3333333222 899999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..
T Consensus 129 A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 129 AIDSFKIALGL-----RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHhc-----CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999997 3446889999999999999999999999999999988754
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=2.5e-14 Score=145.91 Aligned_cols=184 Identities=10% Similarity=-0.064 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------ccCh-------HHHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 43 ASALSLLDAALALSPRLELALELKARSLLY-------LRRF-------KDVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 43 ~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~-------l~r~-------~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
..|+..|+++|.++|.++.+|...|..+.. +|++ ++|+..|++++.. ..|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p-------------- 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLK-------------- 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTT--------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCc--------------
Confidence 789999999999999999999999999874 5886 9999999997621 111
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
+ ....|+.+|.++...|++++|+..|++++++
T Consensus 97 -----------~-------------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 97 -----------K-------------------------------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp -----------T-------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred -----------c-------------------------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 1 1135788899999999999999999999865
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008039 189 ATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFS 267 (580)
Q Consensus 189 ~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~ 267 (580)
. |+... +...+ |..+.+.|++++|+..|.
T Consensus 129 ~--------------------------------------p~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 129 E--------------------------------------DIDPTLVYIQY------------MKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp S--------------------------------------SSCTHHHHHHH------------HHHHHHHHCHHHHHHHHH
T ss_pred c--------------------------------------ccCccHHHHHH------------HHHHHHhcCHHHHHHHHH
Confidence 2 33322 33222 888889999999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFAYRS-SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++... | ....+|...+..... +|++++|+..|+++|+++|+++.+|..+|.++..+|++++|+..|++++..
T Consensus 159 ~a~~~~-p----~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 159 KAREDA-R----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTST-T----CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHhcC-C----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999972 3 345667666655433 799999999999999999999999999999999999999999999999764
No 71
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=2.7e-14 Score=138.88 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE---LALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~---~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
...++..|..++ ..|++.+|+..|++++...|.++ .++..+|.+++.+|+|++|+..|++++
T Consensus 4 ~~~~~~~a~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 4 PNEIYATAQQKL---QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345677888887 68999999999999999999874 789999999999999999999999966
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=9.1e-15 Score=146.53 Aligned_cols=217 Identities=15% Similarity=0.057 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALAL------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.-+...+..++ ..|++.+|+..+++++.+ .|....++..+|.++..+|+|++|+..+++++...+..++
T Consensus 44 ~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 118 (338)
T 3ro2_A 44 AIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-- 118 (338)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--
Confidence 44556666665 579999999999999998 6677889999999999999999999999997733221100
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC---
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL--- 174 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~--- 174 (580)
.....+.++.+|.++..+|+
T Consensus 119 ---------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 141 (338)
T 3ro2_A 119 ---------------------------------------------------------KVGEARALYNLGNVYHAKGKSFG 141 (338)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHHHHTSS
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHHHHHcCcccc
Confidence 00112467889999999999
Q ss_pred -----------------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 175 -----------------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 175 -----------------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
+++|+..|++++.+.... .........+.
T Consensus 142 ~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~----------------------------------~~~~~~~~~~~ 187 (338)
T 3ro2_A 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL----------------------------------GDRAAQGRAFG 187 (338)
T ss_dssp SSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------TCHHHHHHHHH
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc----------------------------------CCHHHHHHHHH
Confidence 999999999988774320 00111122222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC- 315 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~- 315 (580)
..|..++..|+|++|+..|.+++.+.+. ...+....+++++|.++..+|++++|+..+.+++.+.|..
T Consensus 188 ----------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 188 ----------NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp ----------HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 3399999999999999999999987311 1123345689999999999999999999999999987765
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 -----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 -----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999884
No 73
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.62 E-value=1.5e-14 Score=146.65 Aligned_cols=169 Identities=18% Similarity=0.112 Sum_probs=145.8
Q ss_pred CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccc
Q 008039 57 PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKC 136 (580)
Q Consensus 57 P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 136 (580)
|.+...+..+|..++..|++++|+..|++++ ...|++.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~P~~~--------------------------------------- 151 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAW---QLSNQNG--------------------------------------- 151 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHTTSCH---------------------------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCcch---------------------------------------
Confidence 9999999999999999999999999999965 3333222
Q ss_pred ccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCC
Q 008039 137 FSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNH 216 (580)
Q Consensus 137 ~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~ 216 (580)
.+++.||.++..+|++++|+..|++++.+.
T Consensus 152 -----------------------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------------------------- 181 (287)
T 3qou_A 152 -----------------------EIGLLLAETLIALNRSEDAEAVLXTIPLQD--------------------------- 181 (287)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---------------------------
T ss_pred -----------------------hHHHHHHHHHHHCCCHHHHHHHHHhCchhh---------------------------
Confidence 368889999999999999999999877552
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC
Q 008039 217 QTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG 296 (580)
Q Consensus 217 ~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg 296 (580)
|+.... .+.. +..+...+++.+|+..|.+++.. .|.+..+++++|.++...|
T Consensus 182 -----------p~~~~~--~~~~----------~~~l~~~~~~~~a~~~l~~al~~-----~P~~~~~~~~la~~l~~~g 233 (287)
T 3qou_A 182 -----------QDTRYQ--GLVA----------QIELLXQAADTPEIQQLQQQVAE-----NPEDAALATQLALQLHQVG 233 (287)
T ss_dssp -----------CSHHHH--HHHH----------HHHHHHHHTSCHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTT
T ss_pred -----------cchHHH--HHHH----------HHHHHhhcccCccHHHHHHHHhc-----CCccHHHHHHHHHHHHHcc
Confidence 433322 2222 67788899999999999999997 4558999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 297 RIAESIADCNKTLALEPSC--IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 297 ~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++|+..+.++++++|++ ..++.+++.++..+|+.++|+..|++++..
T Consensus 234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999754
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.61 E-value=2.7e-15 Score=170.59 Aligned_cols=175 Identities=17% Similarity=0.010 Sum_probs=146.8
Q ss_pred hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhh-hhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCC
Q 008039 54 ALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSL-KMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDP 132 (580)
Q Consensus 54 ~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 132 (580)
.++|.++.++.+.| +..|++++|++.|++++... ....
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~-------------------------------------- 426 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADG-------------------------------------- 426 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC--------------------------------------------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccc--------------------------------------
Confidence 57899998888877 88999999999999966110 0000
Q ss_pred CcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCC
Q 008039 133 SFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPV 212 (580)
Q Consensus 133 ~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~ 212 (580)
..+......|+.+|.+|+.+|++++|+..|+++++++
T Consensus 427 --------------------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------- 463 (681)
T 2pzi_A 427 --------------------VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV----------------------- 463 (681)
T ss_dssp ---------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------------
T ss_pred --------------------cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------------
Confidence 0001112367889999999999999999999999874
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 008039 213 SNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAY 292 (580)
Q Consensus 213 ~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~ 292 (580)
|++..+...+ |.+++..|+|++|+..|++++++ .|.+..+|+++|.++
T Consensus 464 ---------------p~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 464 ---------------GWRWRLVWYR------------AVAELLTGDYDSATKHFTEVLDT-----FPGELAPKLALAATA 511 (681)
T ss_dssp ---------------CCCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHH-----STTCSHHHHHHHHHH
T ss_pred ---------------cchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHH
Confidence 5555444443 99999999999999999999998 345789999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 293 RSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 293 ~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+|++++ +.+|+++|+++|++..+|+++|.++..+|++++|+.+|++++++
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 99999999 99999999999999999999999999999999999999999766
No 75
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.61 E-value=2.4e-14 Score=137.78 Aligned_cols=182 Identities=12% Similarity=-0.009 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccccc
Q 008039 59 LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFS 138 (580)
Q Consensus 59 ~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 138 (580)
+...+..+|..++..|+|++|+..|++++ ...|+++... -.+...
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~--------------~~~~~~------------------ 47 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTI---ALNIDRTEMY--------------YWTNVD------------------ 47 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCHHHHHHH--------------HHHHSC------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCChHHH--------------HHhhhc------------------
Confidence 56778899999999999999999999966 3333222000 000000
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT 218 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~ 218 (580)
.. .......++.+|.+|..+|++++|+..|++++++.
T Consensus 48 -------------~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------- 84 (208)
T 3urz_A 48 -------------KN-SEISSKLATELALAYKKNRNYDKAYLFYKELLQKA----------------------------- 84 (208)
T ss_dssp -------------TT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred -------------ch-hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------------------------
Confidence 00 00001123458999999999999999999999873
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-
Q 008039 219 PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR- 297 (580)
Q Consensus 219 ~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~- 297 (580)
|++..+...+ |.+++..|+|++|+..|.++|++ .|.+..+++++|.+|...|+
T Consensus 85 ---------p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 85 ---------PNNVDCLEAC------------AEMQVCRGQEKDALRMYEKILQL-----EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp ---------TTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHhHH
Confidence 5555444433 99999999999999999999998 45588999999999987765
Q ss_pred -hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 298 -IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 298 -~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
...++..+.+++..+| ...+++.+|.++..+|+|++|+.+|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4567778888765443 2357899999999999999999999999877
No 76
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.9e-14 Score=153.80 Aligned_cols=187 Identities=13% Similarity=0.004 Sum_probs=143.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---ccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHh
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLY---LRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~---l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
.++|++|+..|++||+++|.++.++..+|.++.. .+++++|++.|++++ ++.|++.
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al---~l~p~~~------------------ 209 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI---RLNPDNQ------------------ 209 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH---HHCSSCH------------------
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh---hcCCcch------------------
Confidence 4689999999999999999999999999998665 567789999999965 3333222
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHH
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACC----HLGLMEDAMVLLQTGKRLATA 191 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~----~lG~~eeAi~~l~~al~l~~~ 191 (580)
+.+..+|..+. ..|++++|+..|++++.+.
T Consensus 210 --------------------------------------------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-- 243 (472)
T 4g1t_A 210 --------------------------------------------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-- 243 (472)
T ss_dssp --------------------------------------------HHHHHHHHHHHHCC------CHHHHHHHHHHHHC--
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--
Confidence 23444555444 4567788999998888762
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008039 192 AFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVD 271 (580)
Q Consensus 192 ~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~ 271 (580)
|+...+...+ |..+...|++++|+..|.++++
T Consensus 244 ------------------------------------~~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 244 ------------------------------------PGVTDVLRSA------------AKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp ------------------------------------SSCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------ccHHHHHHHH------------HHHHHHcCchHHHHHHHHHHHH
Confidence 4444444333 8899999999999999999998
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 272 GRRGAPQGFLAECYMHRAFAYRSS-------------------GRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 272 ~~~~~~~~~~a~~~~nra~a~~~l-------------------g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
. .|.++.+++++|.+|... +.++.|+..+.+++.++|.+..+++.+|.++..+|++
T Consensus 276 ~-----~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 276 Y-----IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp H-----STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred h-----CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 7 455788899999887643 3467888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|+..|++++++
T Consensus 351 ~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 351 EEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
No 77
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.60 E-value=6.7e-15 Score=137.43 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCChhHHHH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
.+|+..|.+++.. .|.+..+++++|.++..+|++++|+..|.++++++|++ ..++..+|.++..+|++++|+.
T Consensus 91 ~~a~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 91 SPELKRLEQELAA-----NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp CHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred chHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 4578999999997 45578999999999999999999999999999999987 6699999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.|++++..
T Consensus 166 ~y~~al~~ 173 (176)
T 2r5s_A 166 KYRRQLYS 173 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998653
No 78
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.59 E-value=1.1e-14 Score=133.68 Aligned_cols=105 Identities=19% Similarity=0.111 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------CCCC------CcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR-------RGAP------QGFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~-------~~~~------~~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
..+..++..|+.+++.|+|++|+..|+++|.+. +|.. .|....+|+|+|.||..+|+|++|+.+|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 445666777999999999999999999999971 1111 355789999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.59 E-value=3.4e-15 Score=136.44 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=108.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
||.++...|++++|+..|++++... |+ .....+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--------------------------------------p~--~~~~~~~l----- 37 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--------------------------------------RQ--KSIKGFYF----- 37 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--------------------------------------HH--HHTTHHHH-----
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--------------------------------------cc--cHHHHHHH-----
Confidence 6899999999999999999987543 22 22223333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
|..+++.|+|++|+..|.++|++ .|.++.+|+++|.+|..+|++++|+..|.++|+++|+++.+++.+|.
T Consensus 38 -----a~~y~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 38 -----AKLYYEAKEYDLAKKYICTYINV-----QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999998 45589999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHH-HHHHHHH
Q 008039 325 LLETIRCLPDCLHD-LEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~-~~~al~l 345 (580)
++..+|++++|+.. +++++++
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHh
Confidence 99999999988876 5999988
No 80
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=5.8e-14 Score=138.07 Aligned_cols=186 Identities=9% Similarity=-0.094 Sum_probs=151.3
Q ss_pred ChhhHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH
Q 008039 38 EHSEIASALSLLDAALAL----SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER 113 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l----~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (580)
..|++++|+..|++++.. +|.++.++..+|.+++.+|++++|+..|++++. ..|.+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~----------------- 76 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA---IRPDM----------------- 76 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCC-----------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---cCCCc-----------------
Confidence 469999999999999998 467789999999999999999999999999662 22211
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 008039 114 VKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAF 193 (580)
Q Consensus 114 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~ 193 (580)
...|+.+|.+|+.+|++++|+..|++++.+.
T Consensus 77 ---------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 107 (275)
T 1xnf_A 77 ---------------------------------------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---- 107 (275)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred ---------------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Confidence 1357889999999999999999999999873
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 194 RRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 194 r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
|+...+...+ |..++..|+|++|+..|.+++.+.
T Consensus 108 ----------------------------------~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 108 ----------------------------------PTYNYAHLNR------------GIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp ----------------------------------TTCTHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------------------------------ccccHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhC
Confidence 3333333332 999999999999999999999972
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 274 RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 274 ~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
| .....+...+.+ ...|++++|+..+.+++..+|.+...+. ++.++...+++++|+..|++++..
T Consensus 142 -~----~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 142 -P----NDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp -T----TCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred -C----CChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc
Confidence 3 344444444444 6679999999999999999998877654 788888999999999999998544
No 81
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.59 E-value=2.3e-14 Score=127.19 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...|..+|.+|+..|++++|+..|++++++. |++..+...
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~-- 52 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------------------PENAILYSN-- 52 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHH--
Confidence 3467889999999999999999999999873 544444333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
. |.+++..|+|++|+..|+++|++ .|.+..+|+++|.++..+|++++|+.+|.++|+++|++..+
T Consensus 53 ~----------~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 53 R----------AACLTKLMEFQRALDDCDTCIRL-----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp H----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred H----------hhHHHhhccHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 3 99999999999999999999998 45588999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 319 LDTRALLL 326 (580)
Q Consensus 319 ~~~ra~~~ 326 (580)
+..++.++
T Consensus 118 ~~~l~~~l 125 (126)
T 4gco_A 118 REGVRNCL 125 (126)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99998875
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.58 E-value=6.9e-14 Score=135.97 Aligned_cols=185 Identities=14% Similarity=0.011 Sum_probs=134.0
Q ss_pred cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccccc
Q 008039 59 LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFS 138 (580)
Q Consensus 59 ~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 138 (580)
++..+..+|..++..|+|++|+..|++++. ..|.++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~---~~p~~~----------------------------------------- 38 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDN---RYPFGP----------------------------------------- 38 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTST-----------------------------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCh-----------------------------------------
Confidence 467889999999999999999999999662 222211
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT 218 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~ 218 (580)
....+++.+|.+|+.+|++++|+..|++++++.
T Consensus 39 ------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----------------------------- 71 (225)
T 2yhc_A 39 ------------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----------------------------- 71 (225)
T ss_dssp ------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred ------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----------------------------
Confidence 001257889999999999999999999999873
Q ss_pred CCCCCCCCCCChHHH-HHHHHH--HHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccH-------
Q 008039 219 PPATPPRTMTESESV-SQLLSH--IKL------LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLA------- 282 (580)
Q Consensus 219 ~~~~~~~~dPd~~~~-~~ll~~--~k~------~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a------- 282 (580)
|++..+ ..++.. +.. +..+...+..+...|++++|+..|.++|+. .|+. +...
T Consensus 72 ---------P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~P~~-~~a~~a~~~l~ 140 (225)
T 2yhc_A 72 ---------PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-YPNS-QYTTDATKRLV 140 (225)
T ss_dssp ---------TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-CTTC-TTHHHHHHHHH
T ss_pred ---------cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-CcCC-hhHHHHHHHHH
Confidence 333322 122222 000 000001123333478999999999999996 3442 2211
Q ss_pred -------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 283 -------ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 283 -------~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
...+.+|.+|...|++.+|+..|+++|+..|+++ ++++.+|.++..+|++++|+..|+++...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1226789999999999999999999999999986 78999999999999999999999988544
No 83
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.56 E-value=2.5e-13 Score=140.80 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=166.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC----------hHHHHHHHHhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIA-SALSLLDAALALSPRLELALELKARSLLYLRR----------FKDVADMLQDYI 87 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~-~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r----------~~eAi~~~~~~l 87 (580)
..+.+..|...-..+++....|++. +|+.+++++|.++|.+..+|..|+.++..+++ +++++..+..++
T Consensus 22 ~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L 101 (331)
T 3dss_A 22 REQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 101 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 4557777777777777666777766 79999999999999999999999999999987 677888777754
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
..+| ...++|+..+.
T Consensus 102 ---~~~P--------------------------------------------------------------Kny~aW~hR~w 116 (331)
T 3dss_A 102 ---RVNP--------------------------------------------------------------KSYGTWHHRCW 116 (331)
T ss_dssp ---HHCT--------------------------------------------------------------TCHHHHHHHHH
T ss_pred ---HhCC--------------------------------------------------------------CCHHHHHHHHH
Confidence 2222 12357788899
Q ss_pred HHHhcCC--HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGL--MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 168 a~~~lG~--~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
++..+|. +++++.++.+++.++ |.+-.+....
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d--------------------------------------prNy~AW~~R-------- 150 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD--------------------------------------ERNFHCWDYR-------- 150 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH--------
T ss_pred HHhccCcccHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH--------
Confidence 9999994 899999999999872 4444444433
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHh
Q 008039 246 RRTAAIAALDAGL-YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS--------------GRIAESIADCNKTLA 310 (580)
Q Consensus 246 ~k~~G~~~~~~g~-y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l--------------g~~~eAl~~~~~Al~ 310 (580)
+.++...|. ++++++.++++|+. +|.+..+|++|+.++..+ +.+++++.++.++|.
T Consensus 151 ----~~vl~~l~~~~~eel~~~~~~I~~-----~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 151 ----RFVAAQAAVAPAEELAFTDSLITR-----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp ----HHHHHHTTCCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHhCcCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 777788888 69999999999997 456899999999999988 568999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhc-C----------ChhHHHHHHHHHHHH
Q 008039 311 LEPSCIQALDTRALLLETI-R----------CLPDCLHDLEHLKLL 345 (580)
Q Consensus 311 ldP~~~~A~~~ra~~~~~l-g----------~~~eAi~~~~~al~l 345 (580)
++|++..+|+.+.-++... | .+++++..++.++++
T Consensus 222 ~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 222 TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 9999999996554444444 3 578899999998888
No 84
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.56 E-value=1.2e-13 Score=139.67 Aligned_cols=219 Identities=12% Similarity=-0.009 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELK-------ARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~r-------A~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
...+..+.-+ ..+|+..|+..|.+++.++|....+|..+ +.+|..++++.+++..+++.+ .++|..
T Consensus 8 ~~~~~~~~~~----~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~ 80 (282)
T 4f3v_A 8 ASLFESAVSM----LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMST 80 (282)
T ss_dssp HHHHHHHHHH----TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGG
T ss_pred HHHHHHHhcc----cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhh
Confidence 3444455443 47999999999999999999999999999 899999999999999999844 555543
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLME 176 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~e 176 (580)
..+.. .. .+--++-.+...+-. ..++.++.++...|+++
T Consensus 81 l~a~~----------------~~------~g~y~~~~~~v~~r~-------------------dl~LayA~~L~~~g~y~ 119 (282)
T 4f3v_A 81 LNARI----------------AI------GGLYGDITYPVTSPL-------------------AITMGFAACEAAQGNYA 119 (282)
T ss_dssp GCCEE----------------EC------CTTTCCCEEECSSHH-------------------HHHHHHHHHHHHHTCHH
T ss_pred hhhhh----------------cc------CCcccccccccCCHh-------------------HHHHHHHHHHHHCCCHH
Confidence 32211 00 000000001111111 13456789999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008039 177 DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA 256 (580)
Q Consensus 177 eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~ 256 (580)
+|.+.|+..+.. .| ... ..+.. |..+++.
T Consensus 120 eA~~~l~~~~~~--------------------------------------~p--~~~-~~~~~----------a~l~~~~ 148 (282)
T 4f3v_A 120 DAMEALEAAPVA--------------------------------------GS--EHL-VAWMK----------AVVYGAA 148 (282)
T ss_dssp HHHHHHTSSCCT--------------------------------------TC--HHH-HHHHH----------HHHHHHT
T ss_pred HHHHHHHHHHhc--------------------------------------CC--chH-HHHHH----------HHHHHHc
Confidence 999998764421 23 333 44444 9999999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHhcCCh
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGF-LAECYMHRAFAYRSSGRIAESIADCNKTLALE--PS-CIQALDTRALLLETIRCL 332 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~-~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld--P~-~~~A~~~ra~~~~~lg~~ 332 (580)
|+|++|+.+|++++.. + .+. ...+++++|.++..+|++++|+..|++++... |. .+.+++.+|.++..+|+.
T Consensus 149 ~r~~dA~~~l~~a~~~--~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKW--P--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp TCHHHHHHHHTTGGGC--S--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHhhcc--C--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 9999999999988875 2 222 25689999999999999999999999999665 66 778999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|...|++++..
T Consensus 225 deA~~~l~~a~a~ 237 (282)
T 4f3v_A 225 SAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999877
No 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=1.3e-13 Score=144.17 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=143.9
Q ss_pred HHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHH
Q 008039 63 LELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDL 142 (580)
Q Consensus 63 ~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (580)
+..+|.+++..|+|++|+..|++++..++..++
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------------- 138 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKD----------------------------------------------- 138 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----------------------------------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-----------------------------------------------
Confidence 345999999999999999999997733221110
Q ss_pred HHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 008039 143 KKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPAT 222 (580)
Q Consensus 143 ~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~ 222 (580)
+....+.|+.+|.+|+.+|++++|+..+++++.+.+..
T Consensus 139 ------------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------------------------------ 176 (383)
T 3ulq_A 139 ------------RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH------------------------------ 176 (383)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred ------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------------------------------
Confidence 01123468899999999999999999999999885320
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHH
Q 008039 223 PPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAES 301 (580)
Q Consensus 223 ~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eA 301 (580)
.+.....+..+.. .|..+...|+|++|+.+|.+++.+.+. .+.+..+.+++|+|.+|..+|++++|
T Consensus 177 ---~~~~~~~~~~~~~----------lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 177 ---EAYNIRLLQCHSL----------FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ---STTHHHHHHHHHH----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---ccchHHHHHHHHH----------HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0001122222222 399999999999999999999987321 22344567999999999999999999
Q ss_pred HHHHHHHHh-----cC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 302 IADCNKTLA-----LE-PSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 302 l~~~~~Al~-----ld-P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+.++.+++. .+ |....+++.+|.++..+|++++|+..|++++++.
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999 57 8899999999999999999999999999999884
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=5.5e-14 Score=155.62 Aligned_cols=165 Identities=16% Similarity=0.038 Sum_probs=126.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
.|++++|+..|+++++++|.+..++..+|.+++.+|+|++|++.|++++ +..|++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~---------------------- 56 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGH---------------------- 56 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTC----------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC----------------------
Confidence 4789999999999999999999999999999999999999999999966 222211
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.+.|+.+|.+|..+|++++|+..|++++++.
T Consensus 57 ----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------- 87 (568)
T 2vsy_A 57 ----------------------------------------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA--------- 87 (568)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred ----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------
Confidence 2367889999999999999999999999873
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
|++..+...+ |..++..|+|++|+..|.+++++ .
T Consensus 88 -----------------------------p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~-----~ 121 (568)
T 2vsy_A 88 -----------------------------PEHPGIALWL------------GHALEDAGQAEAAAAAYTRAHQL-----L 121 (568)
T ss_dssp -----------------------------TTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred -----------------------------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 4444443333 99999999999999999999997 3
Q ss_pred cccHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSS---GRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~l---g~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
|.+..+++++|.++..+ |++++|+..+.++++.+|++..++..++
T Consensus 122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 45789999999999999 9999999999999999999999988777
No 87
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.55 E-value=1.3e-15 Score=158.24 Aligned_cols=146 Identities=16% Similarity=0.033 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+|+..|++++|+..|++++.+.+.. . +.+...... ..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~------------~---------------------~~~~~~~~~--~~ 192 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE------------S---------------------SFSNEEAQK--AQ 192 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC------------C---------------------CCCSHHHHH--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc------------c---------------------cCChHHHHH--HH
Confidence 468889999999999999999999999884310 0 000011110 01
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
......+...|.++++.|+|++|+..|+++|.+ .|.+..+|+++|.+|..+|++++|+.+|.++++++|++..++
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 267 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 112234445599999999999999999999998 345889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDC-LHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eA-i~~~~~al~l 345 (580)
..++.++..+|++++| ...|++++..
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 5577777655
No 88
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.55 E-value=1.4e-14 Score=133.43 Aligned_cols=91 Identities=12% Similarity=0.003 Sum_probs=88.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|++++.+ .|.++.+|+++|.++..+|+|++|+..|.+++.++|+++.+|+++|.+|..+
T Consensus 43 g~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 43 AYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 99999999999999999999998 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 118 g~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 118 KAPLKAKECFELVIQH 133 (151)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999988
No 89
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=2.7e-13 Score=135.28 Aligned_cols=194 Identities=12% Similarity=0.065 Sum_probs=152.8
Q ss_pred cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCc
Q 008039 55 LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSF 134 (580)
Q Consensus 55 l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 134 (580)
-+|....++..+|.+++..|+|++|+..|++++...+... .+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----------------------~~--------------- 63 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-----------------------GH--------------- 63 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------CS---------------
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-----------------------CC---------------
Confidence 3577788999999999999999999999999774322110 00
Q ss_pred ccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCC
Q 008039 135 KCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSN 214 (580)
Q Consensus 135 ~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~ 214 (580)
......+.++.+|.+|+.+|++++|+..|++++.+......
T Consensus 64 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------- 104 (311)
T 3nf1_A 64 -------------------DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-------------------- 104 (311)
T ss_dssp -------------------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred -------------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 00112346788999999999999999999999987432100
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHH
Q 008039 215 NHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFA 291 (580)
Q Consensus 215 ~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a 291 (580)
.........+... |..++..|+|++|+..|.+++.+.. +...+....+++++|.+
T Consensus 105 ------------~~~~~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 105 ------------KDHPAVAATLNNL----------AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp ------------TTCHHHHHHHHHH----------HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------------CCChHHHHHHHHH----------HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 0012223333333 9999999999999999999998621 12246678899999999
Q ss_pred HHHcCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 292 YRSSGRIAESIADCNKTLAL--------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 292 ~~~lg~~~eAl~~~~~Al~l--------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
+..+|++++|+..+.+++.+ +|....+++.+|.++..+|++++|+..|++++++.+
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 888899999999999999999999999999998753
No 90
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.54 E-value=9.4e-14 Score=141.79 Aligned_cols=204 Identities=11% Similarity=0.003 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHhh--C-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQ--E-HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~--~-~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
...++++++...+... . .+++..|+..|+++ |.++..+|+|++|+++|.+++....... +
T Consensus 9 eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-- 71 (307)
T 2ifu_A 9 EAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNR-S-- 71 (307)
T ss_dssp HHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-C--
T ss_pred HHHHHHHHHHHHccccccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-C--
Confidence 4445555555443210 1 35666666666655 6789999999999999999773211100 0
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
.......|..+|.+|..+|++++|
T Consensus 72 --------------------------------------------------------~~~~a~~~~~lg~~~~~~g~~~~A 95 (307)
T 2ifu_A 72 --------------------------------------------------------LFHAAKAFEQAGMMLKDLQRMPEA 95 (307)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHTTCGGGG
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHhCCCHHHH
Confidence 001123577899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE-SVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~-~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
+.+|++++.+.... .+.. .+..+. ..|.++.. |
T Consensus 96 ~~~~~~Al~l~~~~-----------------------------------g~~~~~a~~~~----------~lg~~~~~-g 129 (307)
T 2ifu_A 96 VQYIEKASVMYVEN-----------------------------------GTPDTAAMALD----------RAGKLMEP-L 129 (307)
T ss_dssp HHHHHHHHHHHHTT-----------------------------------TCHHHHHHHHH----------HHHHHHTT-T
T ss_pred HHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHH----------HHHHHHHc-C
Confidence 99999999884210 0111 122222 23889988 9
Q ss_pred CHHHHHHHHHHHHhccCCC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcC
Q 008039 258 LYSEAIRHFSKIVDGRRGA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------IQALDTRALLLETIR 330 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------~~A~~~ra~~~~~lg 330 (580)
+|++|+.+|.+++.+.+.. .......++.++|.+|..+|+|++|+..|++++.+.|.+ ..+++.+|.++..+|
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g 209 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA 209 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Confidence 9999999999999974221 112246889999999999999999999999999986643 458899999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 008039 331 CLPDCLHDLEHLKLL 345 (580)
Q Consensus 331 ~~~eAi~~~~~al~l 345 (580)
++++|+..|++++ +
T Consensus 210 ~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 210 DYVAAQKCVRESY-S 223 (307)
T ss_dssp CHHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHh-C
Confidence 9999999999997 6
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.53 E-value=8e-13 Score=135.76 Aligned_cols=198 Identities=11% Similarity=-0.023 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc--ChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSE-IASALSLLDAALALSPRLELALELKARSLLYLR--RFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d-~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~--r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
..+.+...+.++. .|+ .++|+.+++++|.++|.+..+|..|+.++..++ +++++++.+..+| ..+|.+
T Consensus 32 y~~~~~~~~a~~~---~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L---~~nPk~--- 102 (306)
T 3dra_A 32 YKQIMGLLLALMK---AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA---LDNEKN--- 102 (306)
T ss_dssp HHHHHHHHHHHHH---TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH---HHCTTC---
T ss_pred HHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH---HHCccc---
Confidence 3444455555553 334 368999999999999999999999999999999 9999999999965 333322
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHH----Hhc---
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC----CHL--- 172 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~----~~l--- 172 (580)
.++|+.++.++ ..+
T Consensus 103 -----------------------------------------------------------y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 103 -----------------------------------------------------------YQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHHHHTTTC
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHHhcccc
Confidence 24567778888 777
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
+++++++.++.+++.++ |.+-.+... + +.+
T Consensus 124 ~~~~~EL~~~~~~l~~~--------------------------------------pkny~aW~~--R----------~~v 153 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD--------------------------------------PKNHHVWSY--R----------KWL 153 (306)
T ss_dssp CCTHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H----------HHH
T ss_pred CCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHH--H----------HHH
Confidence 89999999999999773 444444333 3 778
Q ss_pred HHHcCCHH--HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 253 ALDAGLYS--EAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR------IAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 253 ~~~~g~y~--eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~------~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+.+.|+|+ ++++.++++|+. ++.+..+|++|+.+...+|+ +++++.+++++|.++|++..+|+.++.
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~-----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ 228 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDT-----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG 228 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 88899998 999999999997 45589999999999999998 999999999999999999999999999
Q ss_pred HHHhcCChhHHHH-HHHHHH
Q 008039 325 LLETIRCLPDCLH-DLEHLK 343 (580)
Q Consensus 325 ~~~~lg~~~eAi~-~~~~al 343 (580)
++..+|+..+++. .+++++
T Consensus 229 ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTE
T ss_pred HHHhcCCChHHHHHHHHHHH
Confidence 9999999766554 444453
No 92
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=7e-14 Score=124.05 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------- 315 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------- 315 (580)
+...++.|+.+++.|+|++|+.+|+++|++ .|.++.+|+|+|.||..+|+|++|+.+|.++|+++|++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 344556699999999999999999999998 45588999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++|+++|.++..+|+|++|+..|++++.+
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999877
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=2.9e-13 Score=141.60 Aligned_cols=182 Identities=13% Similarity=0.082 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchH
Q 008039 62 ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSD 141 (580)
Q Consensus 62 ~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 141 (580)
++..+|..++..|+|++|+..|++++..++..++
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------------------------------- 136 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---------------------------------------------- 136 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC----------------------------------------------
Confidence 5677999999999999999999997733221110
Q ss_pred HHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 008039 142 LKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPA 221 (580)
Q Consensus 142 ~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~ 221 (580)
+....+.++.+|.+|+.+|+++.|+..+++++.+.+..
T Consensus 137 -------------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------------------------- 174 (378)
T 3q15_A 137 -------------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH----------------------------- 174 (378)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-----------------------------
T ss_pred -------------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-----------------------------
Confidence 01123468889999999999999999999999885320
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHH
Q 008039 222 TPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAE 300 (580)
Q Consensus 222 ~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~e 300 (580)
.+.....+..+... |..++..|+|++|+.+|.+++.+... ......+.+++|+|.+|..+|++++
T Consensus 175 ----~~~~~~~~~~~~~l----------g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 175 ----PLYSIRTIQSLFVI----------AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp ----TTCHHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ----CCchhhHHHHHHHH----------HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 00011222223333 99999999999999999999997321 1233457899999999999999999
Q ss_pred HHHHHHHHHh-----cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 301 SIADCNKTLA-----LEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 301 Al~~~~~Al~-----ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|+..+.+++. .+|....+++.+|.++..+|++++|+..|++++++
T Consensus 241 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999 88999999999999999999999999999999988
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.52 E-value=6.7e-14 Score=130.55 Aligned_cols=170 Identities=14% Similarity=0.054 Sum_probs=131.2
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
|+..++.++..|..++ ..|++.+|+..|+++++++|+++.++..+|.+++.+|++++|+..|++++ ...| ++
T Consensus 2 ~~~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~---~~~p-~~- 73 (176)
T 2r5s_A 2 NASPDEQLLKQVSELL---QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP---LEYQ-DN- 73 (176)
T ss_dssp ----CTTHHHHHHHHH---HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC---GGGC-CH-
T ss_pred CCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh---hccC-Ch-
Confidence 5556677888898888 68999999999999999999999999999999999999999999999955 2222 11
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHH-HhcCCHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC-CHLGLMED 177 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~-~~lG~~ee 177 (580)
..+..++.+. ...+...+
T Consensus 74 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 74 -------------------------------------------------------------SYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHTSCH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHhhcccch
Confidence 0122223332 22334456
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++++. |++..+...+ |..+...|
T Consensus 93 a~~~~~~al~~~--------------------------------------P~~~~~~~~l------------a~~~~~~g 122 (176)
T 2r5s_A 93 ELKRLEQELAAN--------------------------------------PDNFELACEL------------AVQYNQVG 122 (176)
T ss_dssp HHHHHHHHHHHS--------------------------------------TTCHHHHHHH------------HHHHHHTT
T ss_pred HHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHcc
Confidence 899999998773 5555544444 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
++++|+..|.+++.. +|. +....++.++|.++..+|++++|+..|.++|.
T Consensus 123 ~~~~A~~~~~~~l~~-~p~--~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 123 RDEEALELLWNILKV-NLG--AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHHHTT-CTT--TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh-Ccc--cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999997 332 22456899999999999999999999999885
No 95
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.5e-13 Score=117.90 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
..+...|+.++..|+|++|+..|+++|.+ .|.++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34455699999999999999999999997 3457899999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.++..+|++++|+..|++++++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999985
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.48 E-value=4.2e-13 Score=136.92 Aligned_cols=208 Identities=9% Similarity=-0.023 Sum_probs=148.9
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHccChHHHHHHHHhhhhhhh
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL------ELALELKARSLLYLRRFKDVADMLQDYIPSLK 91 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~------~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~ 91 (580)
.+.+....++..+-.++. ..|++.+|+..|.+++++.+.. ..++...|.+|..+|+|++|+..|++++....
T Consensus 30 ~~~~~A~~~~~~a~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~ 107 (307)
T 2ifu_A 30 PDYDSAASEYAKAAVAFK--NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV 107 (307)
T ss_dssp CCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444455555555544332 5799999999999999997643 56889999999999999999999999773211
Q ss_pred hcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh
Q 008039 92 MANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH 171 (580)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~ 171 (580)
... +. ......+..+|.+|..
T Consensus 108 ~~g-~~----------------------------------------------------------~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 108 ENG-TP----------------------------------------------------------DTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTT-CH----------------------------------------------------------HHHHHHHHHHHHHHTT
T ss_pred HcC-CH----------------------------------------------------------HHHHHHHHHHHHHHHc
Confidence 100 00 0012357789999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHH
Q 008039 172 LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 172 lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G 250 (580)
|++++|+.+|++++.+.+.. .+. .....+. ..|
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~-----------------------------------~~~~~~~~~~~----------~lg 162 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENE-----------------------------------ERLRQAAELIG----------KAS 162 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHH----------HHH
T ss_pred -CCHHHHHHHHHHHHHHHHhC-----------------------------------CChhHHHHHHH----------HHH
Confidence 99999999999999885420 011 1122222 339
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCC-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH-----HHHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRGAP-QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ-----ALDTRAL 324 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~~~-~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~-----A~~~ra~ 324 (580)
..+...|+|++|+.+|.+++.+.+... .+....++.++|.++..+|++++|+..|++++ ++|++.. .+..++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999732111 12234588999999999999999999999999 9997753 3445555
Q ss_pred HHHhcCChhH
Q 008039 325 LLETIRCLPD 334 (580)
Q Consensus 325 ~~~~lg~~~e 334 (580)
++ ..|+.+.
T Consensus 242 ~~-~~~d~~~ 250 (307)
T 2ifu_A 242 AY-DEQDEEQ 250 (307)
T ss_dssp HH-HTTCHHH
T ss_pred HH-HhcCHHH
Confidence 55 4555443
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.48 E-value=7.4e-13 Score=134.10 Aligned_cols=170 Identities=17% Similarity=0.088 Sum_probs=141.0
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
|...+.++..|..++ ..|++.+|+..|.+++.++|+++.++..+|.+++.+|++++|+..|++++. ..|
T Consensus 114 p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p----- 182 (287)
T 3qou_A 114 PREEELXAQQAMQLM---QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQ----- 182 (287)
T ss_dssp CCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGC-----
T ss_pred CCchhhHHHHHHHHH---hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhc-----
Confidence 445566777777777 689999999999999999999999999999999999999999999998551 211
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
...+.++..+..+...|+.++|+
T Consensus 183 ---------------------------------------------------------~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 183 ---------------------------------------------------------DTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp ---------------------------------------------------------SHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHHhhcccCccH
Confidence 01234566777888999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 180 ~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
..|++++.+. |++..+...+ |..+...|++
T Consensus 206 ~~l~~al~~~--------------------------------------P~~~~~~~~l------------a~~l~~~g~~ 235 (287)
T 3qou_A 206 QQLQQQVAEN--------------------------------------PEDAALATQL------------ALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHTTCH
T ss_pred HHHHHHHhcC--------------------------------------CccHHHHHHH------------HHHHHHcccH
Confidence 9999999873 6555555444 9999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
++|+..|.+++.. +|. .....++.+++.++..+|+.++|+..|.++|.
T Consensus 236 ~~A~~~l~~~l~~-~p~--~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRX-DLT--AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHH-CTT--GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-ccc--cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999997 343 12378999999999999999999999999986
No 98
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.47 E-value=1.7e-12 Score=119.30 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.++|.+ .|.+..+|+++|.+|..+|+|++|+.+|.++|.++|++..+|+.+|.+|..+
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999997 4557899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~ 346 (580)
|++++|+..|++++++.
T Consensus 93 g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999999984
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.47 E-value=2.9e-12 Score=131.65 Aligned_cols=206 Identities=8% Similarity=-0.075 Sum_probs=170.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHc---cChHHHHHHHHhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHS--EIASALSLLDAALALSPRLELALELKARSL----LYL---RRFKDVADMLQDY 86 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l----~~l---~r~~eAi~~~~~~ 86 (580)
+..||+..--+...+..+. ..| ++.++|..++.+|.++|.+..+|..|+.++ ..+ +++++++++|.++
T Consensus 60 L~~nP~~~taWn~R~~~L~---~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~ 136 (306)
T 3dra_A 60 INELASHYTIWIYRFNILK---NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM 136 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHH---TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHHH---HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 3456666666777777765 456 999999999999999999999999999999 777 8999999999996
Q ss_pred hhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHH
Q 008039 87 IPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLG 166 (580)
Q Consensus 87 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG 166 (580)
+ ...|. ..++|+..+
T Consensus 137 l---~~~pk--------------------------------------------------------------ny~aW~~R~ 151 (306)
T 3dra_A 137 L---SSDPK--------------------------------------------------------------NHHVWSYRK 151 (306)
T ss_dssp H---HHCTT--------------------------------------------------------------CHHHHHHHH
T ss_pred H---HhCCC--------------------------------------------------------------CHHHHHHHH
Confidence 5 23221 134678889
Q ss_pred HHHHhcCCHH--HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 167 QACCHLGLME--DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 167 ~a~~~lG~~e--eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
.++..+|.++ +++.+++++++++ |.+-.+....
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~d--------------------------------------~~N~sAW~~R------- 186 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDTD--------------------------------------LKNNSAWSHR------- 186 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-------
T ss_pred HHHHHhcccChHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH-------
Confidence 9999999998 9999999999773 4344443333
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcC---CC
Q 008039 245 RRRTAAIAALDAGL------YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAE-SIADCNKTLALE---PS 314 (580)
Q Consensus 245 ~~k~~G~~~~~~g~------y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~e-Al~~~~~Al~ld---P~ 314 (580)
+.++...|+ ++++++.++++|.. .|.+..+|++++.++.++|+..+ ....|.+++.++ |.
T Consensus 187 -----~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 187 -----FFLLFSKKHLATDNTIDEELNYVKDKIVK-----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp -----HHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred -----HHHHHhccccchhhhHHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 667777776 99999999999997 45689999999999999999666 556888888887 89
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
++.++..+|.++.+.|++++|+..|+.+.+
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999965
No 100
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=8.6e-13 Score=146.86 Aligned_cols=207 Identities=10% Similarity=0.025 Sum_probs=169.9
Q ss_pred hhhhHHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC----------hHHHHHHHHhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSE-IASALSLLDAALALSPRLELALELKARSLLYLRR----------FKDVADMLQDYI 87 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d-~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r----------~~eAi~~~~~~l 87 (580)
..+++..|...-..+++....|+ .++|++.++++|.++|.+..+|..|+.++..+++ |+++++.+++++
T Consensus 21 ~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 21 REQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence 44567777655555554445555 4578999999999999999999999999999999 999999999966
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
+..| ..+++|+.+|.
T Consensus 101 ---~~~p--------------------------------------------------------------K~y~aW~hR~w 115 (567)
T 1dce_A 101 ---RVNP--------------------------------------------------------------KSYGTWHHRCW 115 (567)
T ss_dssp ---HHCT--------------------------------------------------------------TCHHHHHHHHH
T ss_pred ---HhCC--------------------------------------------------------------CCHHHHHHHHH
Confidence 2222 12467888999
Q ss_pred HHHhcC--CHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 168 ACCHLG--LMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 168 a~~~lG--~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
++..+| ++++++.+++++++++ |.+-.+....
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d--------------------------------------~~N~~aW~~R-------- 149 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD--------------------------------------ERNFHCWDYR-------- 149 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH--------
T ss_pred HHHHcccccHHHHHHHHHHHHhhc--------------------------------------cccccHHHHH--------
Confidence 999999 7799999999999873 4444444443
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHh
Q 008039 246 RRTAAIAALDAG-LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS--------------GRIAESIADCNKTLA 310 (580)
Q Consensus 246 ~k~~G~~~~~~g-~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l--------------g~~~eAl~~~~~Al~ 310 (580)
|.++.+.| .++++++.++++|+. .|.+..+|++|+.++..+ +.++++++++.+||.
T Consensus 150 ----~~~l~~l~~~~~~el~~~~~~I~~-----~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 150 ----RFVAAQAAVAPAEELAFTDSLITR-----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp ----HHHHHHTCCCHHHHHHHHHTTTTT-----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCChHHHHHHHHHHHHH-----CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 88888889 999999999999997 456899999999999986 568999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCChhH------------HHHHHHHHHHH
Q 008039 311 LEPSCIQALDTRALLLETIRCLPD------------CLHDLEHLKLL 345 (580)
Q Consensus 311 ldP~~~~A~~~ra~~~~~lg~~~e------------Ai~~~~~al~l 345 (580)
++|++..+|+.++.++...+.+++ |+..|.+++.+
T Consensus 221 ~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~ 267 (567)
T 1dce_A 221 TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTV 267 (567)
T ss_dssp HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECT
T ss_pred hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceec
Confidence 999999999999999999999777 66667766554
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=4.3e-12 Score=109.40 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|.+++..|++++|+..|++++.+. |+...+... .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~--~- 41 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------------------PRSAEAWYN--L- 41 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H-
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------------------------------------CcchhHHHH--H-
Confidence 57789999999999999999999998762 333332222 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|..++..|++++|+..|.+++.. .|....+++++|.++...|++++|+..+.+++..+|.+..+++
T Consensus 42 ---------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 107 (136)
T 2fo7_A 42 ---------GNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 107 (136)
T ss_dssp ---------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 88999999999999999999997 3446788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+|.++...|++++|+..|++++++
T Consensus 108 ~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 108 NLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999999876
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.46 E-value=2.3e-12 Score=126.17 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=143.7
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhh
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALAL--------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLK 91 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l--------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~ 91 (580)
+..+.-+...|..++ ..|++.+|+..|.+++.+ +|....++..+|.++..+|+|++|+..|++++...+
T Consensus 40 ~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 40 PDVATMLNILALVYR---DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 444555666666665 579999999999999988 477788999999999999999999999999774321
Q ss_pred hcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh
Q 008039 92 MANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH 171 (580)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~ 171 (580)
.. ..++ +......++.+|.+|+.
T Consensus 117 ~~-----------------------~~~~----------------------------------~~~~~~~~~~la~~~~~ 139 (283)
T 3edt_B 117 KV-----------------------LGKF----------------------------------HPDVAKQLNNLALLCQN 139 (283)
T ss_dssp HH-----------------------HCTT----------------------------------CHHHHHHHHHHHHHHHT
T ss_pred HH-----------------------cCCC----------------------------------ChHHHHHHHHHHHHHHH
Confidence 11 0010 11223468889999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHH
Q 008039 172 LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMT-ESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 172 lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP-d~~~~~~ll~~~k~~~~~k~~G 250 (580)
+|++++|+..|++++.+..... .+ .......+... |
T Consensus 140 ~g~~~~A~~~~~~al~~~~~~~---------------------------------~~~~~~~~~~~~~l----------a 176 (283)
T 3edt_B 140 QGKAEEVEYYYRRALEIYATRL---------------------------------GPDDPNVAKTKNNL----------A 176 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHS---------------------------------CTTCHHHHHHHHHH----------H
T ss_pred cCCHHHHHHHHHHHHHHHHHhc---------------------------------CCCCHHHHHHHHHH----------H
Confidence 9999999999999998742200 01 11223333333 9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCC--------------------------------------------CCCcccHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRG--------------------------------------------APQGFLAECYM 286 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~--------------------------------------------~~~~~~a~~~~ 286 (580)
..++..|+|++|+..|.+++.+... ...+....++.
T Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (283)
T 3edt_B 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLR 256 (283)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999985110 12356778999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 287 HRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 287 nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
++|.+|..+|++++|+..+.+++++.
T Consensus 257 ~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 257 SLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999863
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.45 E-value=1.1e-12 Score=145.14 Aligned_cols=132 Identities=14% Similarity=0.039 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++.+|++++|+..|++++++. |++..+...+
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l-- 63 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALH--------------------------------------PGHPEAVARL-- 63 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------------------------------------TTCHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH--
Confidence 368889999999999999999999998762 5544444333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|..++..|+|++|+..|.+++++ .|.+..+++++|.++..+|++++|+..++++++++|++..++
T Consensus 64 ----------g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (568)
T 2vsy_A 64 ----------GRVRWTQQRHAEAAVLLQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128 (568)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------HHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999997 345789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CChhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETI---RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~ra~~~~~l---g~~~eAi~~~~~al~l~ 346 (580)
+.+|.++..+ |++++|+..|++++++.
T Consensus 129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999999999 99999999999998873
No 104
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.45 E-value=2.2e-12 Score=130.28 Aligned_cols=188 Identities=11% Similarity=0.047 Sum_probs=139.3
Q ss_pred CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcc
Q 008039 56 SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFK 135 (580)
Q Consensus 56 ~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 135 (580)
+|.....+..++..++..|+|++|++.+.+++. ..+...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~---~~~~~~-------------------------------------- 109 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK---KEEYHP-------------------------------------- 109 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCCCCH--------------------------------------
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc---cccCCh--------------------------------------
Confidence 345556677889999999999999999998652 211000
Q ss_pred cccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCC
Q 008039 136 CFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNN 215 (580)
Q Consensus 136 ~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~ 215 (580)
+. . .....++.+|.++...|++++|+..|++++.+...
T Consensus 110 -----~~--~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------------------ 147 (293)
T 2qfc_A 110 -----EF--Q-----------QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT------------------------ 147 (293)
T ss_dssp -----HH--H-----------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC------------------------
T ss_pred -----hH--H-----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc------------------------
Confidence 00 0 00112456899999999999999999999865210
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHH
Q 008039 216 HQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR--RGAPQGFLAECYMHRAFAYR 293 (580)
Q Consensus 216 ~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~--~~~~~~~~a~~~~nra~a~~ 293 (580)
.......+..+... |..++..|+|++|+..|.+++.+. .+........+++|+|.+|.
T Consensus 148 ----------~~~~~~~~~~~~~l----------g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 148 ----------GIDVYQNLYIENAI----------ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp ----------SSCTTHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred ----------CCchHHHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 00111222233333 999999999999999999999542 12211223379999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhcCChhHH-HHHHHHHHHHH
Q 008039 294 SSGRIAESIADCNKTLALEPS------CIQALDTRALLLETIRCLPDC-LHDLEHLKLLY 346 (580)
Q Consensus 294 ~lg~~~eAl~~~~~Al~ldP~------~~~A~~~ra~~~~~lg~~~eA-i~~~~~al~l~ 346 (580)
.+|+|++|+..+++++.+.++ ...+++.+|.++..+|++++| ...|++++.+.
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999999999999999988643 278999999999999999999 77799999885
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.45 E-value=4.4e-13 Score=122.25 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=88.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+ .|.++.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.+|..+
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 99999999999999999999997 4558899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~ 346 (580)
|++++|+..|++++++.
T Consensus 103 g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 103 GELAEAESGLFLAQELI 119 (148)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 99999999999999984
No 106
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.44 E-value=1.6e-12 Score=116.79 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=88.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.. .|.++.+|+++|.++..+|++++|+..|.+++.++|+++.+++.+|.++..+
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 99999999999999999999997 4558899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~ 346 (580)
|++++|+..|++++++.
T Consensus 100 g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 100 GDLDGAESGFYSARALA 116 (142)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999884
No 107
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=6.2e-12 Score=126.96 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=141.4
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE------LALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~------~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
++..+..++..+..++ ..|++++|++.+.+++...|... ..+..+|.++...|+|++|+..|++++. .
T Consensus 71 ~~~~~~~l~~~~~~~~---~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~ 144 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLC---KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN---Q 144 (293)
T ss_dssp HHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT---T
T ss_pred chhHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---H
Confidence 4556677788888777 68999999999999999988765 3456789999999999999999999662 2
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.+... +. ......|+.+|.+|+.+
T Consensus 145 ~~~~~---------------------------------~~-----------------------~~~~~~~~~lg~~y~~~ 168 (293)
T 2qfc_A 145 QLTGI---------------------------------DV-----------------------YQNLYIENAIANIYAEN 168 (293)
T ss_dssp CCCSS---------------------------------CT-----------------------THHHHHHHHHHHHHHHT
T ss_pred HhcCC---------------------------------ch-----------------------HHHHHHHHHHHHHHHHc
Confidence 11100 00 00123678899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH--HHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE--SVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~--~~~~ll~~~k~~~~~k~~G 250 (580)
|++++|+..|++++.+... .|+.. .+..++.. |
T Consensus 169 ~~~~~A~~~~~kal~~~~~-----------------------------------~~~~~~~~~~~~~nl----------g 203 (293)
T 2qfc_A 169 GYLKKGIDLFEQILKQLEA-----------------------------------LHDNEEFDVKVRYNH----------A 203 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHH-----------------------------------SCCCHHHHHHHHHHH----------H
T ss_pred CCHHHHHHHHHHHHHHHHh-----------------------------------cCccccchHHHHHhH----------H
Confidence 9999999999999977421 12222 11233333 9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRIAES-IADCNKTLAL 311 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~~eA-l~~~~~Al~l 311 (580)
..++..|+|++|+..|.+++.+.. .......+.+|+++|.+|..+|++++| ..++.+|+.+
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999999998732 122333588999999999999999999 7779999875
No 108
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.43 E-value=4.1e-12 Score=114.99 Aligned_cols=132 Identities=12% Similarity=0.119 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++..|++++|+..|++++.+. |+...+... .
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------------------~~~~~~~~~--~ 53 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--------------------------------------PSNAIYYGN--R 53 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------------TTCHHHHHH--H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------------------CCChHHHHH--H
Confidence 467889999999999999999999999773 333333322 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|..++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..+.+++.++|++..++
T Consensus 54 ----------a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 118 (166)
T 1a17_A 54 ----------SLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 118 (166)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999997 345788999999999999999999999999999999999998
Q ss_pred HH--HHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 320 DT--RALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~--ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.. ++..+...|++++|+..++++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 119 MKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 44 5555889999999999999998875
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.43 E-value=2e-12 Score=122.94 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.+|.+++..|++++|+..|++++ +|. . ..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----------------------------------------~~~-~--~~~~~l- 43 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----------------------------------------DPH-S--RICFNI- 43 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----------------------------------------SCC-H--HHHHHH-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----------------------------------------CCC-h--HHHHHH-
Confidence 57889999999999999999998753 121 1 223333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH----
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---- 316 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---- 316 (580)
|..++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+.+|.+++.+.|++.
T Consensus 44 ---------g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 109 (213)
T 1hh8_A 44 ---------GCMYTILKNMTEAEKAFTRSINR-----DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109 (213)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH
Confidence 99999999999999999999997 345789999999999999999999999999999888766
Q ss_pred ------------HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 ------------QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ------------~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++.+|.++..+|++++|+..|++++++
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999776
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.42 E-value=6.7e-12 Score=121.11 Aligned_cols=177 Identities=14% Similarity=0.005 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCC
Q 008039 43 ASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGD 122 (580)
Q Consensus 43 ~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 122 (580)
.+|+..|.++.+. .++.++..+|.++...+++++|+..|++++.. +
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------------------g-- 48 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------------------------------G-- 48 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------------------------------T--
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------------------------------C--
Confidence 3578899999986 78999999999999999999999999996511 0
Q ss_pred CCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 123 SSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG----LMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG----~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
...+++.||.+|.. | ++++|+.+|+++...
T Consensus 49 -----------------------------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---------- 82 (212)
T 3rjv_A 49 -----------------------------------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---------- 82 (212)
T ss_dssp -----------------------------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------
T ss_pred -----------------------------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------
Confidence 01367889999998 7 999999999998643
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD----AGLYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~----~g~y~eAi~~y~~AL~~~~ 274 (580)
.+..+...+ |..++. .+++.+|+..|.++++..
T Consensus 83 ------------------------------g~~~a~~~L------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~- 119 (212)
T 3rjv_A 83 ------------------------------GSKSGEIVL------------ARVLVNRQAGATDVAHAITLLQDAARDS- 119 (212)
T ss_dssp ------------------------------TCHHHHHHH------------HHHHTCGGGSSCCHHHHHHHHHHHTSST-
T ss_pred ------------------------------CCHHHHHHH------------HHHHHcCCCCccCHHHHHHHHHHHHHcC-
Confidence 223332222 888887 899999999999999962
Q ss_pred CCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRALLLETI-R-----CLPDCLHDLEHLKL 344 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l-g-----~~~eAi~~~~~al~ 344 (580)
+ ....+.+++++|.+|.. .+++++|+.+|.+++++ |.++.+++.+|.+|... | ++++|+..|+++++
T Consensus 120 ~--~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 120 E--SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred C--CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 1 00248899999999999 89999999999999999 78888999999999864 3 89999999999977
Q ss_pred H
Q 008039 345 L 345 (580)
Q Consensus 345 l 345 (580)
.
T Consensus 197 ~ 197 (212)
T 3rjv_A 197 E 197 (212)
T ss_dssp H
T ss_pred c
Confidence 6
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.41 E-value=3.2e-12 Score=117.49 Aligned_cols=111 Identities=9% Similarity=-0.131 Sum_probs=94.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
....++.+|.+++.+|++++|+..|++++.++ |++..+...+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------------------P~~~~~~~~l 76 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------------------FYNVDYIMGL 76 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH
Confidence 34578899999999999999999999999873 5555554444
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|.+++..|+|++|+.+|.+++.+ .|.++.+|+++|.||..+|++++|+..|+++++++|+..
T Consensus 77 ------------g~~~~~~g~~~~Ai~~~~~al~l-----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~- 138 (151)
T 3gyz_A 77 ------------AAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK- 138 (151)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHH-----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-
T ss_pred ------------HHHHHHHccHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-
Confidence 99999999999999999999998 345788999999999999999999999999999999875
Q ss_pred HHHHHHHH
Q 008039 318 ALDTRALL 325 (580)
Q Consensus 318 A~~~ra~~ 325 (580)
+..++..
T Consensus 139 -~~~~A~~ 145 (151)
T 3gyz_A 139 -LKIKAQS 145 (151)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3444443
No 112
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=3.8e-11 Score=124.45 Aligned_cols=214 Identities=11% Similarity=0.018 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLEL-----ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~-----~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
++-.+..++ ..|++.+|+..+.+++.+.|.... ++..+|.+++..|+|++|+..+++++...+..+
T Consensus 17 ~~~~a~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------ 87 (373)
T 1hz4_A 17 NALRAQVAI---NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------ 87 (373)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC------
Confidence 334454454 579999999999999999886532 678899999999999999999999763211100
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
+ .....+.++.+|.+++..|++++|+.
T Consensus 88 ------------------------------~-----------------------~~~~~~~~~~la~~~~~~G~~~~A~~ 114 (373)
T 1hz4_A 88 ------------------------------V-----------------------WHYALWSLIQQSEILFAQGFLQTAWE 114 (373)
T ss_dssp ------------------------------C-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------c-----------------------HHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0 00112457789999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE-SESVSQLLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd-~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
.|++++.+.+... ++. ......+... |..++..|++
T Consensus 115 ~~~~al~~~~~~~---------------------------------~~~~~~~~~~~~~l----------a~~~~~~g~~ 151 (373)
T 1hz4_A 115 TQEKAFQLINEQH---------------------------------LEQLPMHEFLVRIR----------AQLLWAWARL 151 (373)
T ss_dssp HHHHHHHHHHHTT---------------------------------CTTSTHHHHHHHHH----------HHHHHHTTCH
T ss_pred HHHHHHHHHHHhc---------------------------------cccCcHHHHHHHHH----------HHHHHHhcCH
Confidence 9999998853200 011 1222222223 9999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CcH-H--HH--HHHHHHHHhcCCh
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--SCI-Q--AL--DTRALLLETIRCL 332 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--~~~-~--A~--~~ra~~~~~lg~~ 332 (580)
++|+.+|.+++.+.+....+....++.++|.++...|++++|+..+.+++.+.+ ++. . +. ..++.++...|++
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 999999999999743222333567899999999999999999999999998732 221 1 11 2355668899999
Q ss_pred hHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKL 344 (580)
Q Consensus 333 ~eAi~~~~~al~ 344 (580)
++|...+++++.
T Consensus 232 ~~A~~~~~~a~~ 243 (373)
T 1hz4_A 232 AAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhCCC
Confidence 999999998843
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.40 E-value=7.3e-12 Score=126.45 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHI 240 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~ 240 (580)
+..+|.++...|++++|+..|++++.+... .++. ..+..+...
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-----------------------------------~~~~~~~~~~~~~l- 161 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLT-----------------------------------GIDVYQNLYIENAI- 161 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-----------------------------------CSCTTHHHHHHHHH-
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcc-----------------------------------cccHHHHHHHHHHH-
Confidence 445899999999999999999999975210 0111 222223333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR--GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--- 315 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~--~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--- 315 (580)
|.+++..|+|++|+.+|.+++.... +...+....+|+|+|.+|..+|+|++|+.+++++|.+.+..
T Consensus 162 ---------g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 162 ---------ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 9999999999999999999996421 12345567899999999999999999999999999986544
Q ss_pred ---HHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHH
Q 008039 316 ---IQALDTRALLLETIRC-LPDCLHDLEHLKLLYN 347 (580)
Q Consensus 316 ---~~A~~~ra~~~~~lg~-~~eAi~~~~~al~l~~ 347 (580)
..+++.+|.++..+|+ +++|+..|++++.+..
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8899999999999995 6999999999999853
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=2.4e-12 Score=129.98 Aligned_cols=194 Identities=10% Similarity=0.075 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....+...|..++ ..|++.+|+..|+++|.++|.++.++.++|.+++.+|+|++|+.+|++++ ++.|++
T Consensus 3 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~----- 71 (281)
T 2c2l_A 3 SAQELKEQGNRLF---VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQS----- 71 (281)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTC-----
T ss_pred hHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCC-----
Confidence 3556778888887 68999999999999999999999999999999999999999999999966 222211
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...++.+|.+|..+|++++|+..
T Consensus 72 ---------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 72 ---------------------------------------------------------VKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 13578899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++++.|.. ...+ . ..+...+.. .+...|..
T Consensus 95 ~~~al~l~p~~---------~~~~-----------------------~-~~~~~~~~~--------------~~~~~~~~ 127 (281)
T 2c2l_A 95 LQRAYSLAKEQ---------RLNF-----------------------G-DDIPSALRI--------------AKKKRWNS 127 (281)
T ss_dssp HHHHHHHHHHT---------TCCC-----------------------C-SHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHhCccc---------hhhH-----------------------H-HHHHHHHHH--------------HHHHHHHH
Confidence 99999987531 0000 0 111111111 11111111
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-CChhHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI-RCLPDCLHDLE 340 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l-g~~~eAi~~~~ 340 (580)
..... .+....+...++..+ .|++++|+..++++++++|++......++.++... +.+++|...|+
T Consensus 128 ------~~~~~-----~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 128 ------IEERR-----IHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp ------HHHTC-----CCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHH-----HhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11121 112334444444443 69999999999999999999998888888887776 67888888888
Q ss_pred HHH
Q 008039 341 HLK 343 (580)
Q Consensus 341 ~al 343 (580)
++.
T Consensus 195 ~a~ 197 (281)
T 2c2l_A 195 QVD 197 (281)
T ss_dssp HSS
T ss_pred hhh
Confidence 873
No 115
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=2.9e-11 Score=125.37 Aligned_cols=205 Identities=15% Similarity=0.008 Sum_probs=154.8
Q ss_pred ChhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHh
Q 008039 38 EHSEIASALSLLDAALALS--------PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQL 109 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~--------P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 109 (580)
..|++.+|+..|.+++.+. |....++.++|.++..+|++++|+..+++++.. .+...
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~------------ 169 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV---LSSYQ------------ 169 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTSC------------
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhccC------------
Confidence 4689999999999999976 455677888999999999999999999996632 11000
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008039 110 SRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 110 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~ 189 (580)
+......+..+|.++...|++++|+..|++++.+.
T Consensus 170 ---------------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 170 ---------------------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp ---------------------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00112357789999999999999999999998773
Q ss_pred HHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008039 190 TAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKI 269 (580)
Q Consensus 190 ~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~A 269 (580)
.. ...+....... ....+..+...|++++|+..+.++
T Consensus 205 ~~-----------------------------------~~~~~~~~~~~--------~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 205 GN-----------------------------------GKYHSDWISNA--------NKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp TT-----------------------------------SCCCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hc-----------------------------------cCcchhHHHHH--------HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 11 00111111110 111256678999999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 270 VDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS------CIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 270 L~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~------~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
+... +.........+.++|.++...|++++|+..+.+++.+.+. ...++..+|.++..+|++++|...|++++
T Consensus 242 ~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 242 AKPE-FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp CCCC-CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCC-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8863 3222333557789999999999999999999999987542 23588999999999999999999999998
Q ss_pred HHH
Q 008039 344 LLY 346 (580)
Q Consensus 344 ~l~ 346 (580)
.+.
T Consensus 321 ~~~ 323 (373)
T 1hz4_A 321 KLA 323 (373)
T ss_dssp HHH
T ss_pred HHh
Confidence 884
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.39 E-value=1.2e-11 Score=117.32 Aligned_cols=137 Identities=11% Similarity=0.056 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccc
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSV 139 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 139 (580)
...+..+|.+++..|+|++|+..|+++++ +
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~--------------------------------------------- 35 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-----P--------------------------------------------- 35 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----C---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----C---------------------------------------------
Confidence 44577899999999999999999988541 0
Q ss_pred hHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 008039 140 SDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTP 219 (580)
Q Consensus 140 ~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~ 219 (580)
....|+.+|.+|+.+|++++|+..|++++.+.
T Consensus 36 ------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------ 67 (213)
T 1hh8_A 36 ------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------------------------------ 67 (213)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------
T ss_pred ------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------
Confidence 01357889999999999999999999998772
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC------------CCcccHHHHHH
Q 008039 220 PATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA------------PQGFLAECYMH 287 (580)
Q Consensus 220 ~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~------------~~~~~a~~~~n 287 (580)
|+...+. +.. |..++..|+|++|+..|.+++.+. |. ..+....++++
T Consensus 68 --------~~~~~~~--~~l----------g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (213)
T 1hh8_A 68 --------KHLAVAY--FQR----------GMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYN 126 (213)
T ss_dssp --------TTCHHHH--HHH----------HHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHH
T ss_pred --------ccchHHH--HHH----------HHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHH
Confidence 3333333 223 999999999999999999999963 32 12456699999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 288 RAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 288 ra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
+|.++..+|++++|+..+.+++.++|++
T Consensus 127 l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 127 IAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999999999999999987
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1e-11 Score=108.46 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|..++..|++++|+..|++++++. |++..+...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~~--- 44 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------------------PEDARGYSNR--- 44 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------------------CCChHHHHHH---
Confidence 57889999999999999999999999873 4444333333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CC
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE------PS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld------P~ 314 (580)
|.+++..|+|++|+..|.+++.+ .|.+..+|+++|.++..+|++++|+.++.+++.++ |+
T Consensus 45 ---------a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~ 110 (126)
T 3upv_A 45 ---------AAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110 (126)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchh
Confidence 99999999999999999999998 34578999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHHHhc
Q 008039 315 CIQALDTRALLLETI 329 (580)
Q Consensus 315 ~~~A~~~ra~~~~~l 329 (580)
+..++..++.+...+
T Consensus 111 ~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 111 AREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998887654
No 118
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=1.7e-11 Score=134.28 Aligned_cols=184 Identities=10% Similarity=-0.036 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------ccChH-------HHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 43 ASALSLLDAALALSPRLELALELKARSLLY-------LRRFK-------DVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 43 ~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~-------l~r~~-------eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
..|+..|+++|..+|.++.+|...|..+.. +|+++ +|+..|++++.. ..|+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~--~~p~------------- 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKK------------- 319 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT--TCSS-------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH--hCcc-------------
Confidence 478899999999999999999999999997 79987 899999996621 1111
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
....|+.+|.++...|++++|...|++++.+
T Consensus 320 -------------------------------------------------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 320 -------------------------------------------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred -------------------------------------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 0125778899999999999999999999875
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008039 189 ATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFS 267 (580)
Q Consensus 189 ~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~ 267 (580)
. |.. ..+. ... |..+.+.|++++|+..|.
T Consensus 351 ~--------------------------------------p~~~~~~~--~~~----------~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 351 E--------------------------------------DIDPTLVY--IQY----------MKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp S--------------------------------------SSCHHHHH--HHH----------HHHHHHHHHHHHHHHHHH
T ss_pred c--------------------------------------ccCchHHH--HHH----------HHHHHHhcCHHHHHHHHH
Confidence 2 332 2222 222 777788899999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFA-YRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a-~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++. +| ....++...+.. +...|++++|+..|+++|+.+|+++..|...+.++..+|++++|...|++++..
T Consensus 381 ~Al~~-~~----~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 381 KARED-AR----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHTC-TT----CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHhc-cC----CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99996 22 245556555544 457999999999999999999999999999999999999999999999999765
No 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.37 E-value=2.2e-11 Score=107.21 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=89.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+.+|.+++.++|+++.+++.+|.++..+
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999997 3457899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~~ 347 (580)
|++++|+..|++++++.+
T Consensus 91 ~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 91 ESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCh
Confidence 999999999999999853
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.37 E-value=2.3e-11 Score=122.71 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLEL------ALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~------~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
....+...+..++ ..|++.+|+..+++++...|..+. ++...|.++...++|++|+..|++++. ..+.
T Consensus 74 ~~~~l~~~i~~~~---~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~---~~~~ 147 (293)
T 3u3w_A 74 RKKQFKDQVIMLC---KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN---QQLT 147 (293)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH---TCCC
T ss_pred hHHHHHHHHHHHH---HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---Hhcc
Confidence 4455556666666 689999999999999999887765 334578888888999999999999762 1111
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
.. +.. .....+..+|.+|+.+|++
T Consensus 148 ~~---------------------------------~~~-----------------------~~~~~~~~lg~~y~~~g~~ 171 (293)
T 3u3w_A 148 GI---------------------------------DVY-----------------------QNLYIENAIANIYAENGYL 171 (293)
T ss_dssp CS---------------------------------CTT-----------------------HHHHHHHHHHHHHHHTTCH
T ss_pred cc---------------------------------cHH-----------------------HHHHHHHHHHHHHHHcCCH
Confidence 00 000 0012578899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+.+|++++++.... + ......+..++.. |..+++
T Consensus 172 ~~A~~~~~~al~~~~~~-------------------------------~--~~~~~~~~~~~nl----------g~~y~~ 208 (293)
T 3u3w_A 172 KKGIDLFEQILKQLEAL-------------------------------H--DNEEFDVKVRYNH----------AKALYL 208 (293)
T ss_dssp HHHHHHHHHHHHHHHHS-------------------------------S--CCHHHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-------------------------------c--cchhHHHHHHHHH----------HHHHHH
Confidence 99999999999874210 0 0011222334444 999999
Q ss_pred cCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 008039 256 AGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGR-IAESIADCNKTLAL 311 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~-~~eAl~~~~~Al~l 311 (580)
.|+|++|+..|.+++.+... ......+.+|+++|.++..+|+ +++|+.+|.+|+.+
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999999997321 2233458999999999999995 69999999999976
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.36 E-value=1.7e-11 Score=105.48 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...++.+|.+++..|++++|+..|++++.+. |+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~-- 51 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------------------------------PANAVYFCN-- 51 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------------------------------CCCHHHHHH--
Confidence 4568889999999999999999999998762 333333222
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
. |..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..+
T Consensus 52 ~----------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 116 (131)
T 2vyi_A 52 R----------AAAYSKLGNYAGAVQDCERAICI-----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116 (131)
T ss_dssp H----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred H----------HHHHHHhhchHHHHHHHHHHHhc-----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHH
Confidence 2 99999999999999999999997 34468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChh
Q 008039 319 LDTRALLLETIRCLP 333 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~ 333 (580)
+..+|.++..+|+++
T Consensus 117 ~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 117 KSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999874
No 122
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.36 E-value=8.6e-12 Score=114.46 Aligned_cols=114 Identities=12% Similarity=-0.035 Sum_probs=99.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
....|+.+|.+++..|++++|+..|++++++. |++..+...+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l 51 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------------------------------------PANPIYLSNR 51 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------------TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CcCHHHHHHH
Confidence 34568889999999999999999999999873 4444443333
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|.+++..|+|++|+..|.++|.+ .|.+..+|+++|.+|..+|++++|+.+|.+++.++|++..
T Consensus 52 ------------~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 52 ------------AAAYSASGQHEKAAEDAELATVV-----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred ------------HHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999998 3457899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 008039 318 ALDTRALLL 326 (580)
Q Consensus 318 A~~~ra~~~ 326 (580)
+++.++...
T Consensus 115 ~~~~~~l~~ 123 (164)
T 3sz7_A 115 DAMKRGLET 123 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 123
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=3.6e-11 Score=131.69 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=153.9
Q ss_pred hhhHH-------HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhH
Q 008039 39 HSEIA-------SALSLLDAALA-LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLS 110 (580)
Q Consensus 39 ~~d~~-------~Al~~~~~Al~-l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 110 (580)
.|+++ +|+..|++|+. ++|.+..+|...|.++..+|++++|...|++++. ..|.++
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~------------- 355 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDP------------- 355 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCH-------------
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCc-------------
Confidence 57766 89999999998 8999999999999999999999999999999662 222110
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008039 111 RERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 111 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~ 190 (580)
...|..+|.++...|++++|+..|+++++..
T Consensus 356 ------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 356 ------------------------------------------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred ------------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 1257778999999999999999999998641
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 008039 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI-AALDAGLYSEAIRHFSKI 269 (580)
Q Consensus 191 ~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~-~~~~~g~y~eAi~~y~~A 269 (580)
|..... ++.. +. .+...|++++|+..|+++
T Consensus 387 -------------------------------------~~~~~~--~~~~----------a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 387 -------------------------------------RTRHHV--YVTA----------ALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp -------------------------------------TCCTHH--HHHH----------HHHHHHHTCCHHHHHHHHHHH
T ss_pred -------------------------------------CCchHH--HHHH----------HHHHHHHcCChhHHHHHHHHH
Confidence 211111 1111 22 234689999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 270 VDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ----ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 270 L~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~----A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|+. .|.++.++.+.+..+..+|++++|...|++++...|.++. .|..........|+.+.+...++++++.
T Consensus 418 l~~-----~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 418 LKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHH-----HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHH-----CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 997 3457899999999999999999999999999998765543 7878888888999999999999999988
Q ss_pred HH
Q 008039 346 YN 347 (580)
Q Consensus 346 ~~ 347 (580)
++
T Consensus 493 ~p 494 (530)
T 2ooe_A 493 FR 494 (530)
T ss_dssp TH
T ss_pred Cc
Confidence 53
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.34 E-value=1.6e-11 Score=106.59 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=102.2
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008039 157 EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQL 236 (580)
Q Consensus 157 ~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~l 236 (580)
.....|+.+|.+++..|++++|+..|++++.+ +|++..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------------------------------------~~~~~~~~~~ 55 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------------------------------------NPKDAKLYSN 55 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------------------------------------CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------------------CCCcHHHHHH
Confidence 34567889999999999999999999998865 2444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
. |..++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|++.
T Consensus 56 --l----------a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 56 --R----------AACYTKLLEFQLALKDCEECIQL-----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp --H----------HHHHTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred --H----------HHHHHHhccHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 2 89999999999999999999997 344788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 008039 317 QALDTRALLLETIRC 331 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~ 331 (580)
.++..++.++..+|+
T Consensus 119 ~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 119 EAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988764
No 125
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.33 E-value=6.3e-12 Score=110.43 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=86.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.. .|.++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999997 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999877
No 126
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.31 E-value=1.7e-11 Score=112.18 Aligned_cols=133 Identities=14% Similarity=0.043 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|..++..|++++|+..|++++.+.+..... .+|........ ..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------------------------~~~~~~~~~~~--~~ 60 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR------------------------------EKPGEPEWVEL--DR 60 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT------------------------------SCTTSHHHHHH--HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc------------------------------CCCCHHHHHHH--HH
Confidence 57789999999999999999999999885321100 01111111000 00
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-HHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-QAL 319 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-~A~ 319 (580)
....-+...|.++++.|+|++|+..|+++|.+ .|.++.+|+++|.+|..+|++++|+.+|.+++.++|++. ...
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 135 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKR-----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA 135 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence 11122233499999999999999999999998 455899999999999999999999999999999999998 555
Q ss_pred HHHHHHHHhcC
Q 008039 320 DTRALLLETIR 330 (580)
Q Consensus 320 ~~ra~~~~~lg 330 (580)
..++.+...++
T Consensus 136 ~~l~~~~~~~~ 146 (162)
T 3rkv_A 136 REMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666554433
No 127
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=4.4e-11 Score=113.22 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc-----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL-----------AECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~-----------a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
......+...|+.++..|+|++|+..|.+++.+.+....... ..+++++|.++..+|+|++|+.+|.++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334455666799999999999999999999997321111111 389999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 309 LALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 309 l~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.++|++..+++.+|.++..+|++++|+..|++++++
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.30 E-value=1.5e-11 Score=110.50 Aligned_cols=114 Identities=17% Similarity=0.017 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...++.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l- 58 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------------------HYDARYFLGL- 58 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------------------CccHHHHHHH-
Confidence 3467889999999999999999999999773 5544444333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|.+++..|+|++|+..|.+++.+ .|.++.+++++|.++..+|++++|+..|++++.++|+++..
T Consensus 59 -----------g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 59 -----------GACRQSLGLYEQALQSYSYGALM-----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred -----------HHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 99999999999999999999997 34577899999999999999999999999999999988766
Q ss_pred HHHHHHHHH
Q 008039 319 LDTRALLLE 327 (580)
Q Consensus 319 ~~~ra~~~~ 327 (580)
...+..+..
T Consensus 123 ~~~~~~~~~ 131 (142)
T 2xcb_A 123 EALAARAGA 131 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.30 E-value=1.1e-10 Score=121.58 Aligned_cols=186 Identities=10% Similarity=0.035 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-ChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLR-RFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~-r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
+.+..-+.++.. .+...+|+.+++++|.++|.+..+|..|+.++..++ .++++++.+..+| ..+|
T Consensus 55 ~~~~~~r~~~~~--~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L---~~nP--------- 120 (349)
T 3q7a_A 55 DAMDYFRAIAAK--EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA---VQNL--------- 120 (349)
T ss_dssp HHHHHHHHHHHT--TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---HTTC---------
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HhCC---------
Confidence 333444555532 234568999999999999999999999999999999 5999999999865 2222
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc-C-CHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL-G-LMEDAMVL 181 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l-G-~~eeAi~~ 181 (580)
...++|+.++.++..+ + ++++++.+
T Consensus 121 -----------------------------------------------------Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 121 -----------------------------------------------------KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp -----------------------------------------------------CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred -----------------------------------------------------CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 1235788889999988 8 99999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYS- 260 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~- 260 (580)
+.+++.+ +|.+-.+.... +.++.+.|.++
T Consensus 148 ~~k~L~~--------------------------------------dpkNy~AW~~R------------~wvl~~l~~~~~ 177 (349)
T 3q7a_A 148 IHGSLLP--------------------------------------DPKNYHTWAYL------------HWLYSHFSTLGR 177 (349)
T ss_dssp HHHHTSS--------------------------------------CTTCHHHHHHH------------HHHHHHHHHTTC
T ss_pred HHHHHHh--------------------------------------CCCCHHHHHHH------------HHHHHHhccccc
Confidence 9998755 34444444433 55555555565
Q ss_pred -------HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 261 -------EAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR-------IAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 261 -------eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~-------~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
++++.++++|+. ++.+..+|++|+.++..+++ ++++++++.++|.++|++..+|+.+..++
T Consensus 178 ~~~~~~~eELe~~~k~I~~-----dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV-----DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999997 45689999999999999997 79999999999999999999999988888
Q ss_pred HhcCCh
Q 008039 327 ETIRCL 332 (580)
Q Consensus 327 ~~lg~~ 332 (580)
...|.-
T Consensus 253 ~~~~~~ 258 (349)
T 3q7a_A 253 KHFSLP 258 (349)
T ss_dssp HHTTCC
T ss_pred HhcCCC
Confidence 887764
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.29 E-value=3.9e-11 Score=106.20 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
..++..||.+++..|++++|+..|++++++. |+...+. ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--------------------------------------p~~~~~~--~n 47 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--------------------------------------PSNITFY--NN 47 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHH--HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHH--Hh
Confidence 4567889999999999999999999999873 5444433 33
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP---QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~---~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
+ |.+++..|+|++|+..|.++|++. |.. ....+.+|+++|.++..+|++++|+.+|.++|.++|+
T Consensus 48 l----------g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 48 K----------AAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp H----------HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred H----------HHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 3 999999999999999999999973 321 2234678999999999999999999999999999885
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.29 E-value=1.3e-11 Score=114.38 Aligned_cols=123 Identities=21% Similarity=0.112 Sum_probs=104.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRR 247 (580)
Q Consensus 168 a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k 247 (580)
.++..|++++|+..|++++.+. |+...+...+
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l---------- 50 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN--------------------------------------PQNSEQWALL---------- 50 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC--------------------------------------CSCHHHHHHH----------
T ss_pred hhhhccCHHHHHHHHHHHHHhC--------------------------------------CCcHHHHHHH----------
Confidence 3567789999999999998762 4444444333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFA-YRSSGRI--AESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a-~~~lg~~--~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
|..++..|+|++|+..|.+++.+ .|.+..+++++|.+ +...|++ ++|+..+.+++.++|++..+++.+|.
T Consensus 51 --g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 123 (177)
T 2e2e_A 51 --GEYYLWQNDYSNSLLAYRQALQL-----RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123 (177)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHH-----HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999999999999997 34478899999999 8899999 99999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..+|++++|+..|++++++
T Consensus 124 ~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhh
Confidence 999999999999999999877
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.29 E-value=2e-11 Score=111.10 Aligned_cols=106 Identities=18% Similarity=0.043 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...++.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l- 61 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------------------------------HYDSRFFLGL- 61 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------------------cccHHHHHHH-
Confidence 4467889999999999999999999999873 5444444333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|.+++..|+|++|+..|.+++.+ .|.++.+++++|.++..+|++++|+..|.++++++|+++..
T Consensus 62 -----------g~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 62 -----------GACRQAMGQYDLAIHSYSYGAVM-----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred -----------HHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999998 34477899999999999999999999999999999987654
Q ss_pred H
Q 008039 319 L 319 (580)
Q Consensus 319 ~ 319 (580)
.
T Consensus 126 ~ 126 (148)
T 2vgx_A 126 X 126 (148)
T ss_dssp H
T ss_pred h
Confidence 3
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.29 E-value=1.6e-10 Score=108.27 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=114.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|++.+|+..+.......+....++..+|.+++.+|+|++|+..|++++...+..++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------- 61 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------------------- 61 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----------------------
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC----------------------
Confidence 5789999999665555544478899999999999999999999999997743221100
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.....+.++.+|.++..+|++++|+..|++++.+...
T Consensus 62 -------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------ 98 (203)
T 3gw4_A 62 -------------------------------------HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS------ 98 (203)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred -------------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------
Confidence 0111346788999999999999999999999987431
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMT-ES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP-d~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
.+ +. .....+... |..++..|+|++|+..|.+++.+...
T Consensus 99 -----------------------------~~~~~~~~~~~~~~l----------g~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 99 -----------------------------LPEDPLAASANAYEV----------ATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp -----------------------------SCCCHHHHHHHHHHH----------HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------cCccHHHHHHHHHHH----------HHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 01 11 222223333 88888888888888888888875211
Q ss_pred -CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 276 -APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 276 -~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
......+.++.++|.++..+|++++|+..+.+++.+
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 111223445566666666666666666666666655
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.29 E-value=4.1e-11 Score=124.22 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-----------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ-----------GFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~-----------~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
....+...|+.+++.|+|++|+..|.++|.+. |... +....+|+|+|.||..+|+|++|+.+|+++|.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666999999999999999999999983 3310 11268999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 311 LEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 311 ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++|+++.+|+++|.+|..+|+|++|+.+|++++++
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.28 E-value=6.5e-11 Score=110.90 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
+.++.+|.+++..|++++|+.+|++++.+... ..........+...
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------------~~~~~~~~~~~~~l 72 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQK----------------------------------SGDHTAEHRALHQV 72 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------------------------------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH----------------------------------cCCcHHHHHHHHHH
Confidence 46788999999999999999999999987421 00111222333333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-Cc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--Cc
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP-QG-FLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--SC 315 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~-~~-~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--~~ 315 (580)
|..++..|+|++|+..|.+++.+..... .+ ....+++++|.++..+|++++|+..+.+++.+.+ .+
T Consensus 73 ----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 73 ----------GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999732111 22 4678899999999999999999999999997632 12
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 ----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999985
No 136
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.28 E-value=3.4e-11 Score=130.30 Aligned_cols=140 Identities=13% Similarity=0.020 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
.+.|+.+|.+++..|++++|+..|++++++.+... . . ....... .
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~----------~---------------------~--~~~~~~~--~ 312 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY----------G---------------------L--SEKESKA--S 312 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC----------S---------------------C--CHHHHHH--H
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc----------c---------------------C--ChHHHHH--H
Confidence 35688899999999999999999999998853200 0 0 0011000 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
.......+...|.++++.|+|++|+.+|+++|.+ .|.+..+|+++|.+|..+|+|++|+.+|.++++++|++..+
T Consensus 313 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 1112334455699999999999999999999998 34589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~ 338 (580)
+..++.++..++++++|...
T Consensus 388 ~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 388 RLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 137
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=6.7e-11 Score=124.72 Aligned_cols=216 Identities=9% Similarity=0.035 Sum_probs=165.8
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH-----------------HHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLE-----------------LALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~-----------------~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
-+.+|+.++ ..|+|.+|++.|.+++...|... .++..+|.+|..+|+|++|++.+.++++
T Consensus 7 ~l~~a~~l~---~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 7 KLEEARRLV---NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467888888 68999999999999999998753 4688899999999999999999999663
Q ss_pred hhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHH
Q 008039 89 SLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQA 168 (580)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a 168 (580)
.....+ +..... -....+|.+
T Consensus 84 ~~~~~~------------------------------------------------~~~~~~-----------~~~~~l~~~ 104 (434)
T 4b4t_Q 84 YMMQFA------------------------------------------------KSKTVK-----------VLKTLIEKF 104 (434)
T ss_dssp HHHTSC------------------------------------------------HHHHHH-----------HHHHHHHHH
T ss_pred HHHHcc------------------------------------------------chHHHH-----------HHHHHHHHH
Confidence 321100 000000 134567888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRT 248 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~ 248 (580)
+...|+++.|+.++++++.+..... + .+....+ ....
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~---------~-----------------------~~~~~~~--~~~l--------- 141 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREK---------R-----------------------VFLKHSL--SIKL--------- 141 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSS---------C-----------------------CSSHHHH--HHHH---------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhC---------c-----------------------cHHHHHH--HHHH---------
Confidence 9999999999999999998754210 0 1122222 2222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---Cc----HHHHH
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP---SC----IQALD 320 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP---~~----~~A~~ 320 (580)
|..++..|+|.+|+..+.+++.... ..+.+....++.+.|.+|..+|+|+.|...+++++.+.+ +. ...+.
T Consensus 142 -a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 142 -ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp -HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred -HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 9999999999999999999987532 233566788999999999999999999999999998742 21 35677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
..|.++...++|++|..+|..+++.+.
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 889999999999999999999988753
No 138
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=1.9e-10 Score=98.82 Aligned_cols=99 Identities=26% Similarity=0.305 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.+|.+++..|++++|+..|++++.+. |+...+... .
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~--l- 75 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------------------PRSAEAWYN--L- 75 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------------------------------------CCchHHHHH--H-
Confidence 46677888888888888888888887652 222222222 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
|..++..|++++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|+
T Consensus 76 ---------~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 76 ---------GNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp ---------HHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 77888889999999999988886 2335778888999999999999999999999988886
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.27 E-value=2.8e-11 Score=130.93 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-----------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP-----------QGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~-----------~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
.....++..|+.+++.|+|.+|+..|.++|.+. |.. .+....+|+|+|.||+++|+|++|+.+|+++|
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344556677999999999999999999999973 331 11227899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 310 ~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999877
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.27 E-value=4.4e-11 Score=110.57 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..++.+|..++.+|++++|+..|++++++.|.. .+ ...+ +........+.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~---------~~-----------------~~a~--~~~~~~a~a~~n~ 63 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTM---------PP-----------------EEAF--DHAGFDAFCHAGL 63 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---------CT-----------------TSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---------cc-----------------hhhh--hhccchHHHHHHH
Confidence 357889999999999999999999999996420 00 0000 0111122233444
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--CCCCCcccHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR--RGAPQGFLAECY----MHRAFAYRSSGRIAESIADCNKTLALEP 313 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~--~~~~~~~~a~~~----~nra~a~~~lg~~~eAl~~~~~Al~ldP 313 (580)
|.++.+.|+|++|+..|+++|++- ...-.|..+.+| +|+|.++..+|++++|+.+|+++|+++|
T Consensus 64 ----------g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 64 ----------AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999960 000023478889 9999999999999999999999999999
Q ss_pred CcHHH
Q 008039 314 SCIQA 318 (580)
Q Consensus 314 ~~~~A 318 (580)
++...
T Consensus 134 ~d~~~ 138 (159)
T 2hr2_A 134 ERKGE 138 (159)
T ss_dssp HCCSC
T ss_pred CcHHH
Confidence 87543
No 141
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.27 E-value=7.2e-11 Score=124.35 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-----------CCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA-----------PQGFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~-----------~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
.+.....++..|+.+++.|+|++|+..|+++|.+.+.. ..+....+|+|+|.||.++|+|++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34456667888999999999999999999999831000 1456789999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|+++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.27 E-value=6.4e-10 Score=115.14 Aligned_cols=210 Identities=11% Similarity=0.110 Sum_probs=157.3
Q ss_pred ccchhhhHHHHHHHHHHHHHhhC-------hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC--hHHHHHHHHhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQE-------HSEIASALSLLDAALALSPRLELALELKARSLLYLRR--FKDVADMLQDY 86 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r--~~eAi~~~~~~ 86 (580)
+..||+...-|......+..... ...+.+++.+++.+|..+|.+..+|..|+.++..+++ +++++++|.++
T Consensus 57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 136 (331)
T 3dss_A 57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 136 (331)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 34566666666666655542111 1227899999999999999999999999999999995 89999999996
Q ss_pred hhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHH
Q 008039 87 IPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLG 166 (580)
Q Consensus 87 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG 166 (580)
+ +..|.+ ..+|...+
T Consensus 137 l---~~dprN--------------------------------------------------------------y~AW~~R~ 151 (331)
T 3dss_A 137 L---EADERN--------------------------------------------------------------FHCWDYRR 151 (331)
T ss_dssp H---HHCTTC--------------------------------------------------------------HHHHHHHH
T ss_pred H---HhCCCC--------------------------------------------------------------HHHHHHHH
Confidence 5 332221 13567789
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 167 QACCHLGL-MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 167 ~a~~~lG~-~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
.++..+|. +++++.++.+++.++ |.+..+....
T Consensus 152 ~vl~~l~~~~~eel~~~~~~I~~~--------------------------------------p~N~SAW~~R-------- 185 (331)
T 3dss_A 152 FVAAQAAVAPAEELAFTDSLITRN--------------------------------------FSNYSSWHYR-------- 185 (331)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHC--------------------------------------SCCHHHHHHH--------
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHC--------------------------------------CCCHHHHHHH--------
Confidence 99999999 599999999999773 5555554443
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhccCCCCCcccHHHHH-HHHHHHHHcC----------ChHH
Q 008039 246 RRTAAIAALDA--------------GLYSEAIRHFSKIVDGRRGAPQGFLAECYM-HRAFAYRSSG----------RIAE 300 (580)
Q Consensus 246 ~k~~G~~~~~~--------------g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~-nra~a~~~lg----------~~~e 300 (580)
+..+... +.++++++++.++|.. .|.+..+|+ .++......| .+++
T Consensus 186 ----~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 186 ----SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp ----HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred ----HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 4444443 5689999999999997 445778886 5555554444 5889
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH---hcCChhHHHHHHHHHHHH
Q 008039 301 SIADCNKTLALEPSCIQALDTRALLLE---TIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 301 Al~~~~~Al~ldP~~~~A~~~ra~~~~---~lg~~~eAi~~~~~al~l 345 (580)
++..|.++|+++|++..++...+.+.. ..+..++....|.+++++
T Consensus 257 el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 257 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 999999999999999777666665433 467888999999999988
No 143
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.27 E-value=8e-10 Score=119.70 Aligned_cols=231 Identities=10% Similarity=-0.050 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhhhhhhcCCC
Q 008039 22 IVDKYIRDARTLIATQ-EHSEIASALSLLDAALALSPRLELALELKARSLLY----LRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~-~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
...-+...+..+.... ..+++.+|+..|.++++. .++.++..+|.++.. .+++++|+..|++++.. . +
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~--~ 254 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---G--N 254 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---T--C
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C--C
Confidence 3455666676665211 168999999999999986 467889999999997 89999999999996621 0 0
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc----
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL---- 172 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l---- 172 (580)
. .+...+ ..++..+. +... +.. +.+.-+.+.........++.||.+|...
T Consensus 255 ~------~a~~~l----g~~y~~g~-----~~~~----------d~~-~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 255 S------IAQFRL----GYILEQGL-----AGAK----------EPL-KALEWYRKSAEQGNSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp H------HHHHHH----HHHHHHTT-----TSSC----------CHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTB
T ss_pred H------HHHHHH----HHHHHCCC-----CCCC----------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCC
Confidence 0 000000 00110000 0000 000 1111111111112234667788888887
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 -GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 173 -G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
+++++|+.+|+++.+.. +..+. +.. |.
T Consensus 309 ~~~~~~A~~~~~~a~~~~----------------------------------------~~~a~--~~l----------g~ 336 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQG----------------------------------------DATAQ--ANL----------GA 336 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----------------------------------------CHHHH--HHH----------HH
T ss_pred cCCHHHHHHHHHHHHhcC----------------------------------------CHHHH--HHH----------HH
Confidence 88888888888877541 12222 222 88
Q ss_pred HHHHcC---CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 252 AALDAG---LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 252 ~~~~~g---~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
.++..| ++++|+.+|.++++.. ++.+++++|.+|.. .+++++|+..|.++++. .++.+++++|.
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~ 407 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG-------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGE 407 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 888866 8999999999999962 67899999999999 89999999999999986 47999999999
Q ss_pred HHHh----cCChhHHHHHHHHHHHHH
Q 008039 325 LLET----IRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 325 ~~~~----lg~~~eAi~~~~~al~l~ 346 (580)
+|.. .+++++|+..|++++++.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9998 899999999999998873
No 144
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.27 E-value=1e-10 Score=103.98 Aligned_cols=143 Identities=15% Similarity=0.047 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLL 237 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll 237 (580)
.+.++.+|.+++..|++++|+..|++++.+.+.. ++. ..+..+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----------------------------------~~~~~~~~~~~ 53 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-----------------------------------GDKAAERIAYS 53 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----------------------------------CCchHHHHHHH
Confidence 3568889999999999999999999999885420 111 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--- 313 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--- 313 (580)
..|..++..|+|++|+..|.+++.+.+. ...+....+++++|.++..+|++++|+..+.+++.+.+
T Consensus 54 ----------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 54 ----------NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 2399999999999999999999987321 12233477899999999999999999999999998732
Q ss_pred ---CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 314 ---SCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 314 ---~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
....++..+|.++..+|++++|+..|++++++.
T Consensus 124 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 336789999999999999999999999999884
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.26 E-value=5e-11 Score=112.86 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHH-HHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESV-SQLLS 238 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~-~~ll~ 238 (580)
..++.+|.+++..|++++|+..|++++.+.+. +|+.... ..-..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----------------------------------~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-----------------------------------TEEWDDQILLDKK 83 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-----------------------------------CTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-----------------------------------ccccchhhHHHHH
Confidence 35778999999999999999999999987421 0110000 00000
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
.......+...|.+++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+.+|.+++.++|++..+
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-----DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 0001223344599999999999999999999997 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHH
Q 008039 319 LDTRALLLETIRCLPDCL-HDLEHL 342 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi-~~~~~a 342 (580)
+..++.++..++++.++. ..|.+.
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887 445544
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.26 E-value=2.1e-10 Score=96.88 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.+|.+++..|++++|+..|++++.+. |++..+... .
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~--~- 44 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--------------------------------------PHNHVLYSN--R- 44 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------------------------------CCcHHHHHH--H-
Confidence 57788999999999999999999988762 333333222 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..++.
T Consensus 45 ---------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 45 ---------SAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp ---------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ---------HHHHHhhccHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 88999999999999999999997 3447889999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 321 TRALLLE 327 (580)
Q Consensus 321 ~ra~~~~ 327 (580)
.++.+..
T Consensus 111 ~l~~~~~ 117 (118)
T 1elw_A 111 GLQNMEA 117 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 8888753
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.26 E-value=1e-10 Score=101.42 Aligned_cols=91 Identities=21% Similarity=0.374 Sum_probs=87.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.. .|.+..+++++|.++..+|++++|+..|.+++.++|++..+++.+|.++..+
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999997 3447899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 98 ~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 98 KDYTKAMDVYQKALDL 113 (133)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999999887
No 148
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.26 E-value=9.6e-12 Score=129.17 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccH-----------------HHHHHHHHHHHHcCChHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLA-----------------ECYMHRAFAYRSSGRIAES 301 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a-----------------~~~~nra~a~~~lg~~~eA 301 (580)
.+.....++..|+.+++.|+|.+|+..|.++|.+. |... .+|+|+|.||.++|+|++|
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44556778888999999999999999999999972 2233 4899999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 302 IADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 302 l~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+|+++|.++|++.++|+++|.+|..+|+|++|+.+|++++++
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.25 E-value=2.4e-10 Score=97.32 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++..|++++|+..|++++.+. |+...+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~--l 49 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------------------PNNAEAWYN--L 49 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------------------cCcHHHHHH--H
Confidence 467889999999999999999999998762 333333222 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..++
T Consensus 50 ----------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 114 (125)
T 1na0_A 50 ----------GNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114 (125)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------HHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 88999999999999999999997 344678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 008039 320 DTRALLLETIR 330 (580)
Q Consensus 320 ~~ra~~~~~lg 330 (580)
..+|.++...|
T Consensus 115 ~~l~~~~~~~g 125 (125)
T 1na0_A 115 QNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 150
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.25 E-value=1e-09 Score=118.82 Aligned_cols=230 Identities=9% Similarity=-0.052 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhhhhhhcCCC
Q 008039 22 IVDKYIRDARTLIATQ-EHSEIASALSLLDAALALSPRLELALELKARSLLY----LRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~-~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
..+-++..+..++... ..+++..|+..|.++++. .++.++..+|.+|.. .+++++|+..|++++.. .+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-----GL 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CC
Confidence 4555666666665211 168999999999999987 678999999999999 99999999999996621 00
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh----c
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH----L 172 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~----l 172 (580)
+. +.- . -..++..+. +...+ .. +.+.-+.+..+.....+++.||.+|.. .
T Consensus 111 ~~------a~~---~-Lg~~y~~g~-----g~~~~----------~~-~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 111 PQ------AQQ---N-LGVMYHEGN-----GVKVD----------KA-ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp HH------HHH---H-HHHHHHHTS-----SSCCC----------HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HH------HHH---H-HHHHHHcCC-----CCCCC----------HH-HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 00 000 0 000000000 00000 00 001111111111234456666766666 6
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
+++++|+.+|+++.+. .+..+. ...|..
T Consensus 165 ~d~~~A~~~~~~a~~~----------------------------------------~~~~a~------------~~Lg~~ 192 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQ----------------------------------------GNVWSC------------NQLGYM 192 (490)
T ss_dssp CCHHHHHHHHHHHHHT----------------------------------------TCHHHH------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHC----------------------------------------CCHHHH------------HHHHHH
Confidence 6677777777666532 112222 222888
Q ss_pred HHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 253 ALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 253 ~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+.. .+++++|+..|.++++.. ++.+++++|.+|.. .+++++|+..+.+++.. .++.+++.+|.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 263 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG-------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGY 263 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 888 899999999999999852 56789999999997 89999999999999876 67899999999
Q ss_pred HHHh----cCChhHHHHHHHHHHHH
Q 008039 325 LLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~----lg~~~eAi~~~~~al~l 345 (580)
++.. .+++++|+..|+++++.
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999 99999999999999654
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.7e-10 Score=102.09 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=87.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+. |. .+....+++++|.++..+|++++|+..|.+++.++|+++.+++.+|.++..+
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 112 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLD-AT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL 112 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSC-CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHc-cc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc
Confidence 999999999999999999999972 32 1123899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 113 ~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 113 GRLDQAVLDLQRCVSL 128 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999887
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.22 E-value=2.2e-10 Score=99.57 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~ 324 (580)
..|..++..|+|++|+..|.+++.. .|. .+....+++++|.++..+|++++|+..|.+++..+|++ +.+++.+|.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL-YPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH-CCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3499999999999999999999996 343 34455899999999999999999999999999999999 999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..+|++++|+..|+++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999887
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.22 E-value=6.5e-11 Score=99.22 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS--CIQALDTRALLLE 327 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--~~~A~~~ra~~~~ 327 (580)
|..++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|+ +..+++.+|.++.
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQL-----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 99999999999999999999997 3447889999999999999999999999999999999 9999999999999
Q ss_pred hc-CChhHHHHHHHHHHHH
Q 008039 328 TI-RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 328 ~l-g~~~eAi~~~~~al~l 345 (580)
.+ |++++|+..|++++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 99 9999999999999655
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.21 E-value=1.1e-10 Score=117.79 Aligned_cols=97 Identities=16% Similarity=0.263 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
+...|+.++..|+|++|+..|+++|.. .|.+..+|+++|.+|..+|++++|+.+|++++.++|++..+++.+|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344499999999999999999999997 455889999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l~~ 347 (580)
|..+|++++|+..|++++++.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999853
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.21 E-value=1.4e-10 Score=98.03 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
.+...|..++..|+|++|+..|.+++.. .|.+..+++++|.++..+|++++|+..+.+++.++|++..+++.+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3444599999999999999999999997 34478899999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..+|++++|+..|++++++
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999999766
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.20 E-value=9.5e-11 Score=102.83 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++.+|.+++..|++++|+..|++++++. |++..+...+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------------------P~~~~a~~~l---- 57 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--------------------------------------PEREEAWRSL---- 57 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------------TTCHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------------------CCCHHHHHHH----
Confidence 6788999999999999999999999873 5555554444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|.+++..|++++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..++++++++|++..
T Consensus 58 --------g~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 58 --------GLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999999998 3457889999999999999999999999999999998764
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.20 E-value=1.5e-10 Score=101.66 Aligned_cols=114 Identities=9% Similarity=-0.042 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...|+.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------------------~~~~~~~~~l- 49 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------------------PLVAVYYTNR- 49 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------------------------------cCcHHHHHHH-
Confidence 3468889999999999999999999999873 4444433333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS---- 314 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~---- 314 (580)
|.+++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..|.+++.++|+
T Consensus 50 -----------~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 113 (137)
T 3q49_B 50 -----------ALCYLKMQQPEQALADCRRALEL-----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113 (137)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------HHHHHHhcCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH
Confidence 99999999999999999999997 3457899999999999999999999999999999988
Q ss_pred -cHHHHHHHHHHHH
Q 008039 315 -CIQALDTRALLLE 327 (580)
Q Consensus 315 -~~~A~~~ra~~~~ 327 (580)
+......+..+..
T Consensus 114 ~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 114 FGDDIPSALRIAKK 127 (137)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 5555555554443
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.20 E-value=2.8e-10 Score=102.78 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
....+...|..++..|+|++|+..|.+++.. .|.+..+++++|.++..+|++++|+..+.+++.++|+++.+++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3445556699999999999999999999997 34578999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++..+|++++|+..|++++++
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999888
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4.1e-10 Score=99.61 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=99.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQL 236 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~l 236 (580)
....++.+|.+++..|++++|+..|++++++ +|++.. ...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------------------------------------~~~~~~~~~~~ 68 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--------------------------------------DATPQDQAVLH 68 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------------------------------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------------------------------------cccchHHHHHH
Confidence 3456788999999999999999999999865 244311 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+.. |..++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..+.+++.++|++.
T Consensus 69 ~~~----------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 69 RNR----------AACHLKLEDYDKAETEASKAIEK-----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHH----------HHHHHHTTCHHHHHHHHHHHHHH-----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHH----------HHHHHHHccHHHHHHHHHHHHhh-----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 333 99999999999999999999997 344789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 008039 317 QALDTRALLLET 328 (580)
Q Consensus 317 ~A~~~ra~~~~~ 328 (580)
.++..++.+...
T Consensus 134 ~~~~~l~~~~~~ 145 (148)
T 2dba_A 134 VFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHhh
Confidence 999988887654
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.19 E-value=9.5e-11 Score=108.42 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+|+..|++++|+..|++++.+. |++..+...+
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l-- 84 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR--------------------------------------GENAELYAAL-- 84 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------------------CSCHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------------------CCCHHHHHHH--
Confidence 467889999999999999999999999874 4443333332
Q ss_pred HHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 240 IKLLLRRRTAAIA-ALDAGLY--SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 240 ~k~~~~~k~~G~~-~~~~g~y--~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
|.. ++..|+| ++|+..|.+++.. .|.+..+++++|.++..+|++++|+..+.+++.++|++.
T Consensus 85 ----------a~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 85 ----------ATVLYYQASQHMTAQTRAMIDKALAL-----DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp ----------HHHHHHHTTTCCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred ----------HHHHHHhcCCcchHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 888 7899999 9999999999997 345789999999999999999999999999999999976
Q ss_pred HH
Q 008039 317 QA 318 (580)
Q Consensus 317 ~A 318 (580)
..
T Consensus 150 ~~ 151 (177)
T 2e2e_A 150 NR 151 (177)
T ss_dssp CH
T ss_pred cH
Confidence 54
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.18 E-value=7.6e-10 Score=96.07 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHI 240 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~ 240 (580)
++.+|.+++..|++++|+..|++++... |++.. ...++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------p~~~~~~~~~~~l- 45 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--------------------------------------PNGVYTPNALYWL- 45 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------SSSTTHHHHHHHH-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--------------------------------------CCCcccHHHHHHH-
Confidence 6778999999999999999999998763 32221 1222223
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|.+++..|+|++|+..|.+++.. .|. .+....+++++|.++..+|++++|+..+++++..+|++..+..
T Consensus 46 ---------g~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 46 ---------GESYYATRNFQLAEAQFRDLVSR-YPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-CTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred ---------HHHHHHhccHHHHHHHHHHHHHH-CCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999999999999999997 333 2334889999999999999999999999999999999998877
Q ss_pred HHHHHHHhcCC
Q 008039 321 TRALLLETIRC 331 (580)
Q Consensus 321 ~ra~~~~~lg~ 331 (580)
.+..+....++
T Consensus 115 a~~~l~~l~~~ 125 (129)
T 2xev_A 115 AQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 77666554443
No 162
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.17 E-value=1.4e-09 Score=128.56 Aligned_cols=183 Identities=15% Similarity=0.106 Sum_probs=126.3
Q ss_pred CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccc
Q 008039 57 PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKC 136 (580)
Q Consensus 57 P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 136 (580)
..++.+|..+|.++...|++++|++.|.++ +|
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD---------------------------------------- 1133 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DD---------------------------------------- 1133 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CC----------------------------------------
Confidence 567888888888888888888888888761 11
Q ss_pred ccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCC
Q 008039 137 FSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNH 216 (580)
Q Consensus 137 ~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~ 216 (580)
...|+.+|.++..+|++++|+++|+.+++..+. ........+.+..++
T Consensus 1134 ----------------------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-----~~Idt~LafaYAKl~----- 1181 (1630)
T 1xi4_A 1134 ----------------------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-----SYVETELIFALAKTN----- 1181 (1630)
T ss_pred ----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-----ccccHHHHHHHHhhc-----
Confidence 125778999999999999999999998865311 000000001000000
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC
Q 008039 217 QTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG 296 (580)
Q Consensus 217 ~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg 296 (580)
.......+.... .......-|..++..|+|++|+.+|.++- -|..++.++.++|
T Consensus 1182 ------------rleele~fI~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-------------ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1182 ------------RLAELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------------NFGRLASTLVHLG 1235 (1630)
T ss_pred ------------CHHHHHHHHhCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhh-------------HHHHHHHHHHHhC
Confidence 000011111000 01122345999999999999999999862 4788999999999
Q ss_pred ChHHHHHHHHHHHhcCC-------------------------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 297 RIAESIADCNKTLALEP-------------------------SCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 297 ~~~eAl~~~~~Al~ldP-------------------------~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++|++.+.+|...++ .+++-+..++..|...|.|++|+..|++++.+
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 99999999999855543 24455667788899999999999999999766
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.17 E-value=5.9e-10 Score=95.68 Aligned_cols=92 Identities=17% Similarity=0.313 Sum_probs=87.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
.|..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|+++.+++.+|.++..
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 399999999999999999999997 344688999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
+|++++|+..|++++++
T Consensus 93 ~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALEL 109 (131)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhc
Confidence 99999999999999887
No 164
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.7e-11 Score=102.35 Aligned_cols=92 Identities=16% Similarity=0.284 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------HHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------IQAL 319 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------~~A~ 319 (580)
+...|..++..|+|++|+..|++++.+ .|.+..+++++|.++..+|++++|+.+|++++.++|++ ..++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 344499999999999999999999997 34578999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
+.+|.++..+|++++|+..|+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 99999999999999988776654
No 165
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.16 E-value=8.7e-12 Score=104.11 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=50.8
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
.++|++|||.++++..+|++|||++++++||||+++... .+.|+..|+.|++||++|.
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~-----------------~~~A~~~F~~i~eAyevL~ 90 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPY-----------------EQYAKMIFMELNDAWSEFE 90 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTT-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchh-----------------HhHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999875321 1468899999999999764
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1.7e-10 Score=116.68 Aligned_cols=183 Identities=15% Similarity=0.070 Sum_probs=140.4
Q ss_pred chhhhHHHHHHH-------HHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHH---------------------HHHHH
Q 008039 18 SNRKIVDKYIRD-------ARTLIATQEHSEIASALSLLDAALALSPRLELALE---------------------LKARS 69 (580)
Q Consensus 18 ~~~~~~~~~~~~-------~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~---------------------~rA~~ 69 (580)
.+|.-.+-|+.. +..+. ..+++.+++..+.+++++.|+.-.+++ ..|.+
T Consensus 35 ~dP~~~Daw~g~~a~g~~~~~~L~---~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 35 YDESACDAWIGRIRCGDTDRVTLF---RAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC 111 (282)
T ss_dssp HCTTCHHHHHHHHHTTCCCHHHHH---HHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred hChhhhHHHHhHHHccCCcHHHHH---HHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence 467777778777 55555 567788999999999999886654444 48999
Q ss_pred HHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHh
Q 008039 70 LLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAG 149 (580)
Q Consensus 70 l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 149 (580)
|...|+|++|.+.|+..+. ..
T Consensus 112 L~~~g~y~eA~~~l~~~~~---~~-------------------------------------------------------- 132 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPV---AG-------------------------------------------------------- 132 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCC---TT--------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHHHh---cC--------------------------------------------------------
Confidence 9999999999999887431 00
Q ss_pred hhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008039 150 LCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE 229 (580)
Q Consensus 150 l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd 229 (580)
.... ..|.+|.+++..|++++|+..|+.+... |+
T Consensus 133 ------p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~---------------------------------------~d 166 (282)
T 4f3v_A 133 ------SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW---------------------------------------PD 166 (282)
T ss_dssp ------CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC---------------------------------------SC
T ss_pred ------CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc---------------------------------------CC
Confidence 0112 5678999999999999999999865432 22
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc-cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 230 SE-SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGF-LAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 230 ~~-~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~-~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
+. .....+.. |.++...|++++|+..|.+++.. +. .|. ...+++++|.|+.++|+.++|+..+++
T Consensus 167 ~~~~~~a~~~L----------G~al~~LG~~~eAl~~l~~a~~g--~~-~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 167 KFLAGAAGVAH----------GVAAANLALFTEAERRLTEANDS--PA-GEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHTS--TT-TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccHHHHHHHH----------HHHHHHCCCHHHHHHHHHHHhcC--CC-CccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 11122223 99999999999999999999974 21 133 667999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHH
Q 008039 308 TLALEPSCIQALDTR 322 (580)
Q Consensus 308 Al~ldP~~~~A~~~r 322 (580)
++..+|+ ..++..+
T Consensus 234 a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 234 LQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHSCC-HHHHHHH
T ss_pred HHhcCCc-HHHHHHH
Confidence 9999999 7766554
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=3.4e-10 Score=119.13 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|..+|.+++..|++++|+..|++++++.+... .. ... ...... +......+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--~~-----~~~---------------~~~~~~--~~~~~~~~--- 276 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--AA-----AED---------------ADGAKL--QPVALSCV--- 276 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HH-----SCH---------------HHHGGG--HHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--cc-----cCh---------------HHHHHH--HHHHHHHH---
Confidence 3578899999999999999999999998643210 00 000 000000 11122222
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
...|.++++.|+|++|+.+|+++|++ .|.++.+|+++|.+|..+|++++|+.++.++++++|++..++
T Consensus 277 -------~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~ 344 (370)
T 1ihg_A 277 -------LNIGACKLKMSDWQGAVDSCLEALEI-----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 344 (370)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -------HHHHHHHHhccCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 33399999999999999999999997 345899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHH
Q 008039 320 DTRALLLETIRCLPDCLH 337 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~ 337 (580)
..++.++..+++++++..
T Consensus 345 ~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 345 AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887754
No 168
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=8.9e-11 Score=96.46 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=55.4
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++... ..+...|+.|++||++| ++
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-------------------~~a~~~f~~i~~Ay~~L-~d 65 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-------------------EEAERRFKQVAEAYEVL-SD 65 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTH-------------------HHHHHHHHHHHHHHHHH-SS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH-------------------HHHHHHHHHHHHHHHHH-CC
Confidence 45679999999999999999999999999999999976521 46788999999999965 55
Q ss_pred hhhHHHH
Q 008039 473 IMDEEAA 479 (580)
Q Consensus 473 ~~~~~~~ 479 (580)
+..+..+
T Consensus 66 ~~~R~~Y 72 (82)
T 2ej7_A 66 AKKRDIY 72 (82)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 6544433
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.15 E-value=5.1e-10 Score=96.24 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=87.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------HHHH
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC-------IQAL 319 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~-------~~A~ 319 (580)
...|..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..|.+++.++|++ ..++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34499999999999999999999997 34478999999999999999999999999999999887 9999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+|.++..+|++++|+..|++++++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999887
No 170
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=94.45 Aligned_cols=63 Identities=29% Similarity=0.512 Sum_probs=53.2
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++..+|+++|+++++++|||++.. ..+...|+.|++||++ ++++
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~-L~d~ 62 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---------------------PGATEAFKAIGTAYAV-LSNP 62 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---------------------HHHHHHHHHHHHHHHH-HTSH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHH-HCCH
Confidence 46789999999999999999999999999999999764 3567889999999995 4555
Q ss_pred hhHHH
Q 008039 474 MDEEA 478 (580)
Q Consensus 474 ~~~~~ 478 (580)
..+..
T Consensus 63 ~~R~~ 67 (78)
T 2ctp_A 63 EKRKQ 67 (78)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 53333
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.13 E-value=1e-10 Score=101.20 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=79.0
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|+|++|+.+|.++|.+. + ..|....+++++|.++..+|++++|+..|.++++++|+++.+++.+|.++..+|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~-~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-L-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSC-C-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-C-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 3689999999999999972 1 1356889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008039 335 CLHDLEHLKLLY 346 (580)
Q Consensus 335 Ai~~~~~al~l~ 346 (580)
|+..|++++++.
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998883
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.13 E-value=6.9e-10 Score=95.42 Aligned_cols=119 Identities=15% Similarity=0.146 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|.+++..|++++|+..|++++.+. |+...+.. ..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~~~~~~--~l- 44 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--------------------------------------PTNMTYIT--NQ- 44 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHH--HH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------------------CccHHHHH--HH-
Confidence 57889999999999999999999999762 33333322 22
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP---QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~---~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|..++..|+|++|+..|.+++.+. |.. .+....+++++|.++..+|++++|+..+.+++.++| +..
T Consensus 45 ---------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 113 (131)
T 1elr_A 45 ---------AAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPD 113 (131)
T ss_dssp ---------HHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHH
T ss_pred ---------HHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHH
Confidence 999999999999999999999973 211 111178999999999999999999999999999999 688
Q ss_pred HHHHHHHHHHhcCC
Q 008039 318 ALDTRALLLETIRC 331 (580)
Q Consensus 318 A~~~ra~~~~~lg~ 331 (580)
.+..++.++..+++
T Consensus 114 ~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 114 VLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888766543
No 173
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=96.82 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=52.0
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++..+|+++|+++++++|||++.. ..+...|+.|++||++|.+ +
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~a~~~f~~i~~Ay~~L~d-~ 62 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---------------------PDAEAKFREIAEAYETLSD-A 62 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS---------------------HHHHHHHHHHHHHHHHHHS-S
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hHHHHHHHHHHHHHHHHCC-H
Confidence 46789999999999999999999999999999999763 4678899999999996555 5
Q ss_pred h
Q 008039 474 M 474 (580)
Q Consensus 474 ~ 474 (580)
.
T Consensus 63 ~ 63 (88)
T 2ctr_A 63 N 63 (88)
T ss_dssp H
T ss_pred H
Confidence 4
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.12 E-value=1e-10 Score=121.35 Aligned_cols=148 Identities=13% Similarity=0.022 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++..|++++|+..|++++.+.+..... ............
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------------------------~~~~~~~~~~~~ 227 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF--------------------------------QLYGKYQDMALA 227 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH--------------------------------TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh--------------------------------hhcccHHHHHHH
Confidence 457889999999999999999999999874321000 000111110100
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
+ ....+...|.++++.|+|++|+.+|.++|.+ .|.+..+|+++|.+|..+|++++|+.+|.++++++|++..++
T Consensus 228 l-~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 228 V-KNPCHLNIAACLIKLKRYDEAIGHCNIVLTE-----EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp H-HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 0 1123445699999999999999999999997 345889999999999999999999999999999999999999
Q ss_pred HHHHHH-HHhcCChhHHHHHHHHHHHH
Q 008039 320 DTRALL-LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~-~~~lg~~~eAi~~~~~al~l 345 (580)
..++.+ ....+..+.+...|.+++.+
T Consensus 302 ~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 302 RELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999998 44567788888999998766
No 175
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.12 E-value=1.5e-10 Score=97.69 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=58.0
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++.... +..+..+...|+.|++||++ +++
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~--------------~~~~~~~~~~f~~i~~Ay~~-L~d 77 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVP--------------AGTMEECMQKFIEIDQAWKI-LGN 77 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCC--------------HHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCC--------------hhhhHHHHHHHHHHHHHHHH-HCC
Confidence 346799999999999999999999999999999999764211 12346789999999999995 555
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 78 ~~~R~~YD 85 (94)
T 1wjz_A 78 EETKKKYD 85 (94)
T ss_dssp SSHHHHHH
T ss_pred HHHHHHHH
Confidence 65444443
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.11 E-value=4.4e-11 Score=130.24 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|.+++..|++++|+..|++++++. |+...+...+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--------------------------------------p~~~~~~~~l--- 46 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN--------------------------------------PSNAIYYGNR--- 46 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------------------------------CccHHHHHHH---
Confidence 45678999999999999999999999873 4444443333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|..+++.|+|++|+..|++++++ .|..+.+++++|.+|..+|++++|+..++++++++|++..++.
T Consensus 47 ---------g~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 112 (477)
T 1wao_1 47 ---------SLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 112 (477)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHH
T ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999997 4557899999999999999999999999999999999999999
Q ss_pred HHHHH--HHhcCChhHHHHHHH
Q 008039 321 TRALL--LETIRCLPDCLHDLE 340 (580)
Q Consensus 321 ~ra~~--~~~lg~~~eAi~~~~ 340 (580)
.++.+ +...|+|++|+..|+
T Consensus 113 ~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 113 KYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 99998 889999999999999
No 177
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.11 E-value=5.1e-11 Score=99.06 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=51.6
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
...++|++|||..+++..+|+++||+++++||||+++... ..+.+.|+.|++||++|.+
T Consensus 14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~-------------------~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH-------------------DIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH-------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch-------------------HHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999976532 4678899999999997655
No 178
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=94.62 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=53.2
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++... .+...|+.|++||++| ++
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~--------------------~a~~~f~~i~~Ay~~L-~d 62 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP--------------------KAKEKFSQLAEAYEVL-SD 62 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT--------------------THHHHHHHHHHHHHHH-HS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH--------------------HHHHHHHHHHHHHHHH-CC
Confidence 34678999999999999999999999999999999976532 4678899999999965 44
Q ss_pred hhhHH
Q 008039 473 IMDEE 477 (580)
Q Consensus 473 ~~~~~ 477 (580)
+..+.
T Consensus 63 ~~~R~ 67 (79)
T 2dn9_A 63 EVKRK 67 (79)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55333
No 179
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.6e-10 Score=98.54 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++||+++++||||++... ..+.+.|+.|++||++ +++
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~~-L~d 72 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--------------------AEAAERFTRISQAYVV-LGS 72 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC--------------------SHHHHHHHHHHHHHHH-TTS
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------HHHHHHHHHHHHHHHH-HCC
Confidence 3567899999999999999999999999999999998642 2467889999999995 555
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 73 ~~~R~~YD 80 (99)
T 2yua_A 73 ATLRRKYD 80 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444444
No 180
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.9e-11 Score=99.31 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=49.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+||.+|||.++++..+|+++||++++++||||+.. ..+.+.|+.|++||++|.+
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~d 81 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---------------------PGSEDAFKAVVNARTALLK 81 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---------------------TTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHHCC
Confidence 5799999999999999999999999999999999865 2456779999999997655
No 181
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.11 E-value=1.2e-10 Score=94.42 Aligned_cols=62 Identities=32% Similarity=0.456 Sum_probs=52.0
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.+||.+|||.++++..+|+++|+++++++|||+++. ..+...|+.|++||++ ++++..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~-L~d~~~ 60 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---------------------PGAEEKFKEIAEAYDV-LSDPRK 60 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---------------------TTHHHHHHHHHHHHHH-TTCHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHH-HCCHHH
Confidence 589999999999999999999999999999999764 2456789999999995 555654
Q ss_pred HHHH
Q 008039 476 EEAA 479 (580)
Q Consensus 476 ~~~~ 479 (580)
+..+
T Consensus 61 R~~Y 64 (77)
T 1hdj_A 61 REIF 64 (77)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 182
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=3.4e-09 Score=108.39 Aligned_cols=180 Identities=11% Similarity=-0.019 Sum_probs=138.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCC
Q 008039 45 ALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSS 124 (580)
Q Consensus 45 Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 124 (580)
|+..|++.++..+.+...+...|.++...|++++|+..|.+.|.. .|
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~---~~------------------------------ 131 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN---DE------------------------------ 131 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS---SC------------------------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CC------------------------------
Confidence 677788888887777778889999999999999999999996511 10
Q ss_pred CCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 008039 125 DDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDS 204 (580)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~ 204 (580)
+......+..+++++..+|+.+.|.+.+++..+..
T Consensus 132 ------------------------------~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~--------------- 166 (310)
T 3mv2_B 132 ------------------------------AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI--------------- 166 (310)
T ss_dssp ------------------------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------
T ss_pred ------------------------------CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------
Confidence 00112356678999999999999999999887652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccCCCCC
Q 008039 205 FPFSKFPVSNNHQTPPATPPRTMTE----SESVSQLLSHIKLLLRRRTAAIAALDAG--LYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~dPd----~~~~~~ll~~~k~~~~~k~~G~~~~~~g--~y~eAi~~y~~AL~~~~~~~~ 278 (580)
|| .......+.. |.+.+..| ++.+|+..|+++.+. .
T Consensus 167 -----------------------~d~~~~~d~~l~~Lae----------a~v~l~~g~~~~q~A~~~f~El~~~-----~ 208 (310)
T 3mv2_B 167 -----------------------EDTVSGDNEMILNLAE----------SYIKFATNKETATSNFYYYEELSQT-----F 208 (310)
T ss_dssp -----------------------CHHHHHHHHHHHHHHH----------HHHHHHHTCSTTTHHHHHHHHHHTT-----S
T ss_pred -----------------------ccccccchHHHHHHHH----------HHHHHHhCCccHHHHHHHHHHHHHh-----C
Confidence 32 1223223322 54455555 999999999998774 2
Q ss_pred cc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GF--LAECYMHRAFAYRSSGRIAESIADCNKTLAL----------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~--~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|. ...+++| |++.+|+|++|..+++.++++ +|+++.++.++..+...+|+ +|.+.++++.++
T Consensus 209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 32 3456666 899999999999999988887 59999999999999999998 888999999777
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.10 E-value=2e-09 Score=95.59 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccc
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSV 139 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 139 (580)
..++..+|.+++..|+|++|+..+++++...+..++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------------------------------- 44 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------------------------------- 44 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--------------------------------------------
Confidence 467889999999999999999999997733211000
Q ss_pred hHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 008039 140 SDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTP 219 (580)
Q Consensus 140 ~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~ 219 (580)
.....+.++.+|.+++.+|++++|+.+|++++.+.+..
T Consensus 45 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--------------------------- 82 (164)
T 3ro3_A 45 ---------------KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--------------------------- 82 (164)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------------
T ss_pred ---------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------------
Confidence 00112367889999999999999999999999885320
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCC
Q 008039 220 PATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 220 ~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~ 297 (580)
++. .....+. ..|..++..|+|++|+..|.+++.+... ...+....++.++|.++..+|+
T Consensus 83 --------~~~~~~~~~~~----------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 83 --------KDRAVEAQSCY----------SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp --------TCHHHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------CCcHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 111 1122222 2399999999999999999999986321 2234457889999999999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 008039 298 IAESIADCNKTLALEPS 314 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~ 314 (580)
+++|+..+.+++.+...
T Consensus 145 ~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 145 HDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987543
No 184
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.7e-10 Score=96.97 Aligned_cols=67 Identities=22% Similarity=0.407 Sum_probs=55.0
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++... ..+++.|+.|++||++|. +
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-------------------~~a~~~f~~i~~Ay~~L~-d 65 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK-------------------EEAEKKFKLVSEAYEVLS-D 65 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCS-------------------HHHHHHHHHHHHHHHHHH-S
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccH-------------------HHHHHHHHHHHHHHHHHC-C
Confidence 34678999999999999999999999999999999976532 467889999999999654 4
Q ss_pred hhhHHHH
Q 008039 473 IMDEEAA 479 (580)
Q Consensus 473 ~~~~~~~ 479 (580)
+..+..+
T Consensus 66 ~~~R~~Y 72 (92)
T 2dmx_A 66 SKKRSLY 72 (92)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5433333
No 185
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=1.6e-10 Score=96.26 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=53.2
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||++.. ..+.+.|+.|++||++|. +
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~-d 71 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---------------------PGAEDRFIQISKAYEILS-N 71 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---------------------TTHHHHHHHHHHHHHHHH-S
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHHC-C
Confidence 346799999999999999999999999999999999765 245678999999999654 4
Q ss_pred hhhHHH
Q 008039 473 IMDEEA 478 (580)
Q Consensus 473 ~~~~~~ 478 (580)
+..+..
T Consensus 72 ~~~R~~ 77 (88)
T 2cug_A 72 EEKRTN 77 (88)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 553333
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.09 E-value=1.1e-10 Score=107.68 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=79.7
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI----------AESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~----------~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+.+.|++|+..|.+++++ .|.++.+|+|+|.++..++++ ++|+..|++||+++|++..+|+++|.
T Consensus 14 r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 567889999999999998 455899999999999999886 49999999999999999999999999
Q ss_pred HHHhcC-----------ChhHHHHHHHHHHHH
Q 008039 325 LLETIR-----------CLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg-----------~~~eAi~~~~~al~l 345 (580)
+|..+| +|++|+..|++|+++
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 999985 899999999999998
No 187
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.08 E-value=7.6e-09 Score=111.47 Aligned_cols=123 Identities=19% Similarity=0.074 Sum_probs=91.9
Q ss_pred hHHHHHHHH-H--HhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008039 160 WRYLVLGQA-C--CHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQL 236 (580)
Q Consensus 160 ~~~~~LG~a-~--~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~l 236 (580)
.+++.||.+ + ...|++++|+.+|+++.+. ++..+.
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------------------------------------g~~~A~-- 286 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------------------------------------DQPRAE-- 286 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------------------------------------TCHHHH--
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------------------------------------CCHHHH--
Confidence 367778887 4 4678899999999887743 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 008039 237 LSHIKLLLRRRTAAIAALDAG-----LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNK 307 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g-----~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~ 307 (580)
+.. |..++ .| ++.+|+..|.+++ .. ++.+++++|.+|.. ..++++|+.+|.+
T Consensus 287 ~~L----------g~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 287 LLL----------GKLYY-EGKWVPADAKAAEAHFEKAV-GR-------EVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHH----------HHHHH-HCSSSCCCHHHHHHHHHTTT-TT-------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHH----------HHHHH-cCCCCCCCHHHHHHHHHHHh-CC-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 222 77776 55 8999999999888 31 67888899988887 3488999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~----lg~~~eAi~~~~~al~l 345 (580)
+.+ +.++.+.+++|.+|.. ..++++|+..|+++.+.
T Consensus 348 Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 348 AAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 876 4678888999998875 56888899888888543
No 188
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.07 E-value=2.9e-10 Score=96.80 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=54.7
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.+||.+|||.++++..+|+++|+++++++|||+++... ..+...|+.|++||++| +++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-------------------~~a~~~f~~I~~AY~vL-~d~~~ 61 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK-------------------EFAEKKFKEVAEAYEVL-SDKHK 61 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCC-------------------HHHHHHHHHHHHHHHHH-HSHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccH-------------------HHHHHHHHHHHHHHHHH-CCHHH
Confidence 47999999999999999999999999999999976532 46788999999999965 55654
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+..
T Consensus 62 R~~YD~ 67 (99)
T 2lgw_A 62 REIYDR 67 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 189
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.7e-10 Score=99.34 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=57.1
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++||++++++|||+++.. ..+...|+.|++||++ +++
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~v-L~d 75 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN--------------------PKAVETFQKLQKAKEI-LTN 75 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC--------------------STHHHHHHHHHHHHHH-HHS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHH-HCC
Confidence 4468999999999999999999999999999999998642 2467889999999995 555
Q ss_pred hhhHHHHHHHH
Q 008039 473 IMDEEAAEKRR 483 (580)
Q Consensus 473 ~~~~~~~~~~~ 483 (580)
+..+..+...+
T Consensus 76 ~~~R~~YD~~~ 86 (112)
T 2ctq_A 76 EESRARYDHWR 86 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 66555555443
No 190
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.07 E-value=1.7e-09 Score=90.46 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
+.|+.+|.+++..|++++|+..|++++++. |+...+.. ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~~~~~~--~~ 46 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------------------------------------PEESKYWL--MK 46 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------------------------------------CCCHHHHH--HH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------------------------------------cCCHHHHH--HH
Confidence 356789999999999999999999999772 33333332 22
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc--cHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCc
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGF--LAECYMHRAFAYRSS-GRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~--~a~~~~nra~a~~~l-g~~~eAl~~~~~Al~ldP~~ 315 (580)
|..++..|+|++|+..|.+++.. .|. ...+++++|.++..+ |++++|+.++.+++..+|+.
T Consensus 47 ----------a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 47 ----------GKALYNLERYEEAVDCYNYVINV-----IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred ----------HHHHHHccCHHHHHHHHHHHHHh-----CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999997 344 788999999999999 99999999999999999975
No 191
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.06 E-value=5.2e-09 Score=108.87 Aligned_cols=205 Identities=8% Similarity=-0.090 Sum_probs=156.2
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-c-ChHHHHHHHHhhhhhhhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHS-EIASALSLLDAALALSPRLELALELKARSLLYL-R-RFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l-~-r~~eAi~~~~~~l~~l~~ 92 (580)
+..||+...-+...+..+. ..| ++.+++..++.+|.++|.+..+|..|+.++..+ + +++++++.|.+++ ..
T Consensus 81 L~~nP~~ytaWn~R~~iL~---~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L---~~ 154 (349)
T 3q7a_A 81 VRMNPAHYTVWQYRFSLLT---SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL---LP 154 (349)
T ss_dssp HHHCTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT---SS
T ss_pred HHhCchhHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH---Hh
Confidence 3456666666666666665 345 599999999999999999999999999999998 8 9999999999955 22
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.|. ...+|..++.++..+
T Consensus 155 dpk--------------------------------------------------------------Ny~AW~~R~wvl~~l 172 (349)
T 3q7a_A 155 DPK--------------------------------------------------------------NYHTWAYLHWLYSHF 172 (349)
T ss_dssp CTT--------------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred CCC--------------------------------------------------------------CHHHHHHHHHHHHHh
Confidence 221 124577788888888
Q ss_pred CCHH--------HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 173 GLME--------DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 173 G~~e--------eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
|.++ +++++++++++++ |.+-.+....
T Consensus 173 ~~~~~~~~~~~~eELe~~~k~I~~d--------------------------------------p~N~SAW~~R------- 207 (349)
T 3q7a_A 173 STLGRISEAQWGSELDWCNEMLRVD--------------------------------------GRNNSAWGWR------- 207 (349)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-------
T ss_pred ccccccchhhHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH-------
Confidence 8887 9999999998763 4444444433
Q ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCCh-------------------
Q 008039 245 RRRTAAIAALDAGL-------YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI------------------- 298 (580)
Q Consensus 245 ~~k~~G~~~~~~g~-------y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~------------------- 298 (580)
+.++.+.++ ++++++.++++|.+ .|.+..+|+++..++...|+.
T Consensus 208 -----~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 208 -----WYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp -----HHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred -----HHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 777777776 89999999999997 455889999988888887764
Q ss_pred -HHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 299 -AESIADCNKTLALE------PSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 299 -~eAl~~~~~Al~ld------P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
.+-...|...+... +.++.|+..++.+|...|+.++|+..|+.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44555555555443 6789999999999999999999999999874
No 192
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.05 E-value=3.8e-10 Score=90.51 Aligned_cols=60 Identities=22% Similarity=0.435 Sum_probs=50.1
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++..+|+++|+++++++|||++++. ...|+.|++||++ ++++
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-----------------------~~~f~~i~~Ay~~-L~d~ 61 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-----------------------AEQFKQISQAYEV-LSDE 61 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-----------------------HHHHHHHHHHHHH-HTSH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-----------------------HHHHHHHHHHHHH-HCCH
Confidence 356899999999999999999999999999999997541 3569999999995 4555
Q ss_pred hhHH
Q 008039 474 MDEE 477 (580)
Q Consensus 474 ~~~~ 477 (580)
..+.
T Consensus 62 ~~R~ 65 (73)
T 2och_A 62 KKRQ 65 (73)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5333
No 193
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.6e-08 Score=97.28 Aligned_cols=183 Identities=11% Similarity=0.016 Sum_probs=139.8
Q ss_pred ccccchh--hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc----ChHHHHHHHHhhh
Q 008039 14 HWWLSNR--KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLR----RFKDVADMLQDYI 87 (580)
Q Consensus 14 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~----r~~eAi~~~~~~l 87 (580)
.||.... ....-+...+..++ ..+|+.+|+..|.++++. .++.++..+|.+|.. + ++++|+..|++++
T Consensus 7 ~~~~~aa~~g~~~a~~~lg~~~~---~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 7 SQYQQQAEAGDRRAQYYLADTWV---SSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4544332 24555667777776 478999999999999876 688999999999998 7 8999999999964
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
.. + ...+++.||.
T Consensus 81 ~~------------------------------g-------------------------------------~~~a~~~Lg~ 93 (212)
T 3rjv_A 81 EA------------------------------G-------------------------------------SKSGEIVLAR 93 (212)
T ss_dssp HT------------------------------T-------------------------------------CHHHHHHHHH
T ss_pred HC------------------------------C-------------------------------------CHHHHHHHHH
Confidence 11 0 0136788999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 008039 168 ACCH----LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLL 243 (580)
Q Consensus 168 a~~~----lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~ 243 (580)
+|.. .+++++|+.+|+++.++. |.......++..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~--------------------------------------~~~~~~~a~~~L---- 131 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDS--------------------------------------ESDAAVDAQMLL---- 131 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSST--------------------------------------TSHHHHHHHHHH----
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcC--------------------------------------CCcchHHHHHHH----
Confidence 9988 899999999999987541 211223333333
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 008039 244 LRRRTAAIAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS-G-----RIAESIADCNKTLALEP 313 (580)
Q Consensus 244 ~~~k~~G~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l-g-----~~~eAl~~~~~Al~ldP 313 (580)
|..+.. .+++++|+..|.++++. + .++.+++++|.+|... | ++++|+.+|.+|++.
T Consensus 132 ------g~~y~~g~g~~~d~~~A~~~~~~A~~~--~----~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~-- 197 (212)
T 3rjv_A 132 ------GLIYASGVHGPEDDVKASEYFKGSSSL--S----RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE-- 197 (212)
T ss_dssp ------HHHHHHTSSSSCCHHHHHHHHHHHHHT--S----CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--
T ss_pred ------HHHHHcCCCCCCCHHHHHHHHHHHHHc--C----CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--
Confidence 999999 89999999999999996 2 1456899999999875 3 899999999999988
Q ss_pred CcHHHHHHHHHH
Q 008039 314 SCIQALDTRALL 325 (580)
Q Consensus 314 ~~~~A~~~ra~~ 325 (580)
.+..+...++.+
T Consensus 198 g~~~A~~~l~~l 209 (212)
T 3rjv_A 198 GFDTGCEEFDRI 209 (212)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 456666665543
No 194
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.04 E-value=4.2e-09 Score=89.45 Aligned_cols=91 Identities=22% Similarity=0.204 Sum_probs=86.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.. .|....+++++|.++...|++++|+..+.+++.++|.+..+++.+|.++..+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 99999999999999999999997 3446789999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 91 ~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 91 GDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999877
No 195
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.03 E-value=5.4e-10 Score=96.91 Aligned_cols=67 Identities=15% Similarity=0.297 Sum_probs=55.5
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++.. ..+...|+.|++||++ +++
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~v-L~d 72 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--------------------PEAADKFKEINNAHAI-LTD 72 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC--------------------HHHHHHHHHHHHHHHH-HTC
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHH-HcC
Confidence 3467899999999999999999999999999999997642 3567899999999995 555
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 73 ~~~R~~YD 80 (109)
T 2ctw_A 73 ATKRNIYD 80 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444444
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.03 E-value=8.1e-09 Score=111.26 Aligned_cols=172 Identities=10% Similarity=-0.031 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc---ChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYLR---RFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~---r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
+...|..++..+...+|. ++..+|.+|...| ++++|+..|++++. ..+
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g~----------------------- 210 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVS---RGT----------------------- 210 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TTC-----------------------
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CCC-----------------------
Confidence 566677778888777776 8888999999999 89999999888552 110
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL----GLMEDAMVLLQTGKRLATAAF 193 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l----G~~eeAi~~l~~al~l~~~~~ 193 (580)
.....++.||.+|... +++++|+.+|+++. .
T Consensus 211 ---------------------------------------~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~----- 245 (452)
T 3e4b_A 211 ---------------------------------------VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P----- 245 (452)
T ss_dssp ---------------------------------------SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-----
T ss_pred ---------------------------------------HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-----
Confidence 0012357889998766 79999999999876 2
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHH
Q 008039 194 RRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA-A--LDAGLYSEAIRHFSKIV 270 (580)
Q Consensus 194 r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~-~--~~~g~y~eAi~~y~~AL 270 (580)
++..+...+ |.. + ...+++++|+..|.+++
T Consensus 246 -----------------------------------g~~~a~~~L------------g~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 246 -----------------------------------GYPASWVSL------------AQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp -----------------------------------GSTHHHHHH------------HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred -----------------------------------CCHHHHHHH------------HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 112222222 776 3 46899999999999999
Q ss_pred hccCCCCCcccHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 008039 271 DGRRGAPQGFLAECYMHRAFAYRSSG-----RIAESIADCNKTLALEPSCIQALDTRALLLET----IRCLPDCLHDLEH 341 (580)
Q Consensus 271 ~~~~~~~~~~~a~~~~nra~a~~~lg-----~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~----lg~~~eAi~~~~~ 341 (580)
+.. ++.+++++|.+|. .| ++++|+.+|.+++ |+++.+++++|.+|.. ..++++|+..|++
T Consensus 279 ~~g-------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 279 AAD-------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HTT-------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HCC-------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 852 6889999999998 56 9999999999999 9999999999999987 4599999999999
Q ss_pred HHH
Q 008039 342 LKL 344 (580)
Q Consensus 342 al~ 344 (580)
+.+
T Consensus 348 Aa~ 350 (452)
T 3e4b_A 348 AAR 350 (452)
T ss_dssp HHT
T ss_pred HHh
Confidence 954
No 197
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.03 E-value=5e-10 Score=96.86 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=77.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008039 171 HLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 171 ~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G 250 (580)
.+|++++|+.+|++++++.. .+| .....++.. |
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-----------------------------------~~p--~~~~~~~~l----------g 34 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-----------------------------------QGK--DLAECYLGL----------G 34 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-----------------------------------CHH--HHHHHHHHH----------H
T ss_pred CCCcHHHHHHHHHHHHHcCC-----------------------------------CCc--cHHHHHHHH----------H
Confidence 46899999999999986510 012 233333444 9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
.+++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..+.+++.++|+++....
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQ-----FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999997 4457899999999999999999999999999999999987643
No 198
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.00 E-value=4e-10 Score=97.71 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=57.7
Q ss_pred CCccchhhhhcccCCC-CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 393 TGNVDYYALIGLRRGC-SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a-~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
....+||.+|||.+++ +..+|+++||++++++|||++++.. .+..+...|+.|++||++ ++
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~-----------------~~~~a~~~f~~i~~AY~~-L~ 73 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKE-----------------EKLLAEERFRVIATAYET-LK 73 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHH-----------------HHHHHHHHHHHHHHHHHH-HH
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-----------------ccHHHHHHHHHHHHHHHH-HC
Confidence 3467999999999999 9999999999999999999986511 346788999999999995 55
Q ss_pred chhhHHHHHH
Q 008039 472 NIMDEEAAEK 481 (580)
Q Consensus 472 ~~~~~~~~~~ 481 (580)
++..+..+..
T Consensus 74 d~~~R~~YD~ 83 (109)
T 2qsa_A 74 DDEAKTNYDY 83 (109)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5654444443
No 199
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.00 E-value=1e-10 Score=100.66 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=51.0
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+||.+||+.. ++..+|+++||++++++||||++.... ..+.+..|+..|+.|++||++|.+
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~-------------~~e~~~~A~~~F~~I~~AYevLsd 102 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGA-------------SANQKYMAEKVFELLQEAWDHFNT 102 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTC-------------CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCccc-------------chhhHHHHHHHHHHHHHHHHHHcC
Confidence 468999999996 999999999999999999999653110 012456789999999999996554
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=7.4e-09 Score=115.11 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008039 160 WRYLVLGQACCHLGL----------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE 229 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~----------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd 229 (580)
.+|+.+|.++..+|+ +++++.+++++++.. |.
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--------------------------------------pK 105 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------------------------------------PK 105 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------------------------------------TT
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--------------------------------------CC
Confidence 357778999999998 999999999999773 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-ChHHHHHHHH
Q 008039 230 SESVSQLLSHIKLLLRRRTAAIAALDAG--LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-RIAESIADCN 306 (580)
Q Consensus 230 ~~~~~~ll~~~k~~~~~k~~G~~~~~~g--~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-~~~eAl~~~~ 306 (580)
+-.+... + |.++.+.| +|++++..|.++|++ +|.+..+|++|+.+...+| .+++++++++
T Consensus 106 ~y~aW~h--R----------~w~l~~l~~~~~~~el~~~~k~l~~-----d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 106 SYGTWHH--R----------CWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp CHHHHHH--H----------HHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CHHHHHH--H----------HHHHHHcccccHHHHHHHHHHHHhh-----ccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4444333 3 88888889 789999999999997 4558999999999999999 9999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHHH
Q 008039 307 KTLALEPSCIQALDTRALLLETI--------------RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 307 ~Al~ldP~~~~A~~~ra~~~~~l--------------g~~~eAi~~~~~al~l 345 (580)
++|+.+|.+..||+.|+.++..+ +.+++++.++.+++.+
T Consensus 169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999986 5678999999999887
No 201
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2e-08 Score=105.59 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccc
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSV 139 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 139 (580)
|......|+.+...|+|++|++.|.+++ +..+......+ . ..+
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l---~~~~~~~~~~~-----------------------------~-----~~~ 46 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLL---DKDSSQSSAAA-----------------------------G-----ASV 46 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHH---HSCCCSSSBSS-----------------------------S-----SSB
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCcccchhHH-----------------------------H-----HHH
Confidence 4557778999999999999999999966 33332221100 0 000
Q ss_pred hHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 008039 140 SDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTP 219 (580)
Q Consensus 140 ~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~ 219 (580)
.+.... ....++..||.+|+..|++++|+.+|++++.+.+.
T Consensus 47 ~~~~~~-----------~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~---------------------------- 87 (434)
T 4b4t_Q 47 DDKRRN-----------EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ---------------------------- 87 (434)
T ss_dssp CSHHHH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT----------------------------
T ss_pred HHHHhh-----------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------------
Confidence 000000 11124678999999999999999999999877421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCCh
Q 008039 220 PATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRI 298 (580)
Q Consensus 220 ~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~ 298 (580)
.++....... ....|..+...|++++|+..|.+++.... .......+.++.++|.+|..+|+|
T Consensus 88 -------~~~~~~~~~~---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 88 -------FAKSKTVKVL---------KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp -------SCHHHHHHHH---------HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred -------ccchHHHHHH---------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 0111111111 11126677778999999999999988631 122455788999999999999999
Q ss_pred HHHHHHHHHHHhc------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 299 AESIADCNKTLAL------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 299 ~eAl~~~~~Al~l------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.+|+..+.+++.. .|....++...|.+|..+|+|++|...|++++.+.
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 9999999999876 45568899999999999999999999999998885
No 202
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=98.98 E-value=7.7e-10 Score=92.90 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=51.6
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++..+|+++|+++++++|||+++.. .+.|+.|++||++ ++++
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----------------------~~~f~~i~~Ay~~-L~d~ 61 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----------------------TEKFKEISEAFEI-LNDP 61 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-----------------------HHHHHHHHHHHHH-HTSH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----------------------HHHHHHHHHHHHH-HCCH
Confidence 356899999999999999999999999999999997542 2479999999995 5556
Q ss_pred hhHHHHH
Q 008039 474 MDEEAAE 480 (580)
Q Consensus 474 ~~~~~~~ 480 (580)
..+..+.
T Consensus 62 ~~R~~YD 68 (92)
T 2o37_A 62 QKREIYD 68 (92)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444444
No 203
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=1.6e-09 Score=99.96 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++||++++++||||++.... ++.+..+...|+.|++||+ ++++
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~--------------~~~~~~a~~~f~~i~~Ay~-~L~d 71 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVP--------------AGTVEECVQKFIEIDQAWK-ILGN 71 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCT--------------THHHHHHHHHHHHHHHHHH-HSSS
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCc--------------hhHHHHHHHHHHHHHHHHH-HcCC
Confidence 456799999999999999999999999999999999876431 1245678899999999999 5667
Q ss_pred hhhHHHHHHH
Q 008039 473 IMDEEAAEKR 482 (580)
Q Consensus 473 ~~~~~~~~~~ 482 (580)
+..+..+...
T Consensus 72 p~~R~~Yd~~ 81 (155)
T 2l6l_A 72 EETKREYDLQ 81 (155)
T ss_dssp HHHHCHHHHH
T ss_pred HHHHHHHHHH
Confidence 7755555543
No 204
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=98.95 E-value=6e-10 Score=90.78 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=46.3
Q ss_pred ccchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..++|.+|||.++ ++..+|+++||++++++|||+++. .+.|+.|++||++|.+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~------------------------~~~f~~i~~AYe~L~~ 64 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------------------------HALMQELNSLWGTFKT 64 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------------------------HHHHHHHHHHHHHHhh
Confidence 3479999999999 999999999999999999999643 3569999999996654
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.95 E-value=5.9e-09 Score=89.37 Aligned_cols=82 Identities=7% Similarity=-0.029 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
.+|+..|.+++.. .|.+..+++++|.++..+|++++|+..|.+++.++|++..+|+.+|.++..+|++++|+..|
T Consensus 2 ~~a~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQ-----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3588999999997 34578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 340 EHLKLLY 346 (580)
Q Consensus 340 ~~al~l~ 346 (580)
++++++.
T Consensus 77 ~~al~~~ 83 (115)
T 2kat_A 77 ESGLAAA 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999885
No 206
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=98.93 E-value=4.2e-10 Score=96.60 Aligned_cols=59 Identities=19% Similarity=0.425 Sum_probs=50.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..+||.+|||.++++..+|+++||++++++|||+++.. ..++..|+.|++||++ ++++.
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~~-L~d~~ 60 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--------------------KEAEAKFKEIKEAYEV-LTDSQ 60 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT--------------------CTHHHHHHHHTTTTTS-TTCSH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHH-HCCHH
Confidence 35899999999999999999999999999999997642 1456789999999995 55565
No 207
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=98.92 E-value=1.2e-09 Score=102.62 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=58.0
Q ss_pred ccchhhhhcccCCCC--HHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRGCS--RSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~--~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..+||.+|||+++++ ..+|+++||++++++||||+++.... .+..+...|..|++||++ +++
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~---------------e~~~a~~~f~~In~AY~v-L~d 66 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASER---------------DRLMAVQQAAQINDAYQT-LKD 66 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHH---------------HHHHHHHHHHHHHHHHHH-HHS
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHH---------------HHHHHHHHHHHHHHHHHH-HcC
Confidence 568999999999988 99999999999999999998765432 446688999999999995 566
Q ss_pred hhhHHHHHH
Q 008039 473 IMDEEAAEK 481 (580)
Q Consensus 473 ~~~~~~~~~ 481 (580)
+..+..+..
T Consensus 67 p~~R~~Yd~ 75 (174)
T 3hho_A 67 PLRRAEYLL 75 (174)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 765555543
No 208
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.91 E-value=2.5e-08 Score=117.99 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
-|...|+.+. ..|++++|+..|.+| +++..|...|.++..+|+|++|+++|..++... ++.. .
T Consensus 1107 vWsqLAKAql---~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~-I----- 1169 (1630)
T 1xi4_A 1107 VWSQLAKAQL---QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESY-V----- 1169 (1630)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---cccc-c-----
Confidence 3556666665 679999999999886 888999999999999999999999999866321 1000 0
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
.+.+-..-+++ + .+. . +..+-.+. ....|+.+|..++..|++++|+.+|.+
T Consensus 1170 -dt~LafaYAKl---~--------------------rle-e-le~fI~~~---n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1170 -ETELIFALAKT---N--------------------RLA-E-LEEFINGP---NNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred -cHHHHHHHHhh---c--------------------CHH-H-HHHHHhCC---CHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 00000000000 0 000 0 11111111 123466789999999999999999987
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
+-...... ..++ .+ -+...+....++.......++-+.+++..|+|..|..
T Consensus 1221 A~ny~rLA---~tLv---------kL-----------------ge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1221 VSNFGRLA---STLV---------HL-----------------GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred hhHHHHHH---HHHH---------Hh-----------------CCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence 53221000 0000 00 0112222222222222222333444444444444444
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh--cCChhHHHHHHHHH
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET--IRCLPDCLHDLEHL 342 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~--lg~~~eAi~~~~~a 342 (580)
+... |.. .+..+..++..|...|.|++||..|+.+|.++|.+...+..+|.++.+ -++..+++..|...
T Consensus 1272 cgl~-Iiv--------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1272 CGLH-IVV--------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHh-hhc--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4332 221 456677889999999999999999999999999999999888877764 55667777777766
Q ss_pred HHH
Q 008039 343 KLL 345 (580)
Q Consensus 343 l~l 345 (580)
+.+
T Consensus 1343 ini 1345 (1630)
T 1xi4_A 1343 VNI 1345 (1630)
T ss_pred ccc
Confidence 443
No 209
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.91 E-value=1.2e-09 Score=118.91 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=87.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
.|+.++..|+|++|+..|++++++ .|..+.+|+++|.+|..+|++++|+.+|+++++++|+++.+++++|.+|..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 388889999999999999999997 455799999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
+|++++|+..|++++++
T Consensus 87 ~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV 103 (477)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999999888
No 210
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=98.90 E-value=1.4e-09 Score=101.88 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=56.7
Q ss_pred chhhhhcccCCC--CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 397 DYYALIGLRRGC--SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 397 d~y~iLgv~~~a--~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+||.+|||++++ +..+|+++||++++++||||+++.... .+..|...|..|++||++ ++++.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~---------------e~~~a~~~f~~In~AY~v-L~dp~ 65 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQA---------------EQLAAVQQSATINQAWQT-LRHPL 65 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHH---------------HHHHHHHHHHHHHHHHHH-HHSHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHH---------------HHHHHHHHHHHHHHHHHH-HcCch
Confidence 799999999999 999999999999999999998764422 456788999999999995 55566
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 66 ~R~~Yd 71 (171)
T 1fpo_A 66 MRAEYL 71 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 211
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.89 E-value=1.9e-08 Score=81.47 Aligned_cols=76 Identities=25% Similarity=0.264 Sum_probs=71.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|++..++..+|.++..+
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999997 3447889999999999999999999999999999999999999999999876
Q ss_pred C
Q 008039 330 R 330 (580)
Q Consensus 330 g 330 (580)
|
T Consensus 91 g 91 (91)
T 1na3_A 91 G 91 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 212
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.6e-09 Score=86.37 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=46.4
Q ss_pred ccchhhhhcccC-CCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRR-GCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~-~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..++|++|||.+ +++..+|+++||++++++|||+++. ...|+.|++||++|.+.
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~------------------------~~~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS------------------------PFLATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------------------------HHHHHHHHHHHHHHhhh
Confidence 357999999998 7999999999999999999999532 24799999999977553
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.87 E-value=4.7e-09 Score=96.74 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=75.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008039 171 HLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 171 ~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G 250 (580)
+++.+++|+..|+++++++ |++..+...+ |
T Consensus 14 r~~~feeA~~~~~~Ai~l~--------------------------------------P~~aea~~n~------------G 43 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--------------------------------------PLDADNLTRW------------G 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------H
T ss_pred HHhHHHHHHHHHHHHHHHC--------------------------------------CCCHHHHHHH------------H
Confidence 3456899999999999883 5555554433 7
Q ss_pred HHHHHcCC----------HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHH
Q 008039 251 IAALDAGL----------YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-----------RIAESIADCNKTL 309 (580)
Q Consensus 251 ~~~~~~g~----------y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-----------~~~eAl~~~~~Al 309 (580)
.++...++ +++||..|++||++ .|....+|+|+|.+|..+| ++++|+.+|.+||
T Consensus 44 ~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 44 GVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 77777766 46999999999998 4558999999999999985 8999999999999
Q ss_pred hcCCCcH
Q 008039 310 ALEPSCI 316 (580)
Q Consensus 310 ~ldP~~~ 316 (580)
+++|++.
T Consensus 119 ~l~P~~~ 125 (158)
T 1zu2_A 119 DEQPDNT 125 (158)
T ss_dssp HHCTTCH
T ss_pred HhCCCCH
Confidence 9999975
No 214
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=98.84 E-value=2.9e-09 Score=102.59 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=57.1
Q ss_pred ccchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..+||.+|||.++ ++..+|+++||++++++||||++..... .+..|...|+.|++||++ +++
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~---------------e~~~a~~~f~~In~AY~v-Lsd 105 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQT---------------EKDFSEKHSTLVNDAYKT-LLA 105 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHH---------------HHHHHHHHHHHHHHHHHH-HHS
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHH---------------HHHHHHHHHHHHHHHHHH-HCC
Confidence 5789999999986 7899999999999999999998754322 456788999999999995 566
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 106 p~~R~~Yd 113 (207)
T 3bvo_A 106 PLSRGLYL 113 (207)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76555553
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.84 E-value=9.7e-09 Score=86.47 Aligned_cols=69 Identities=9% Similarity=-0.030 Sum_probs=65.2
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.++.+++++|.++..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 355889999999999999999999999999999999999999999999999999999999999999884
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.84 E-value=4e-09 Score=87.63 Aligned_cols=85 Identities=13% Similarity=0.197 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAE-CYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~-~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
..|..++..|+|++|+..|.+++.. .|.+.. +++++|.++..+|++++|+..|.+++.++|++..++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 3499999999999999999999997 345778 99999999999999999999999999999999998855
Q ss_pred HhcCChhHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l 345 (580)
+.+.+++..|++++.+
T Consensus 75 ---~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYN 90 (99)
T ss_dssp ---HHHHHHHHHHCCTTHH
T ss_pred ---HHHHHHHHHHHHHhcc
Confidence 6677888888887666
No 217
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.82 E-value=3.2e-09 Score=99.57 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=51.2
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
.+||++|||..+++..+|+++||++++++||||+.+.... ..|...|+.|++||++|.+
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e-----------------~~A~~~F~~I~eAYevLsD 175 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYE-----------------QYAKMIFMELNDAWSEFEN 175 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchH-----------------HHHHHHHHHHHHHHHHHCC
Confidence 6899999999999999999999999999999998653321 3588999999999996554
No 218
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=98.79 E-value=1.5e-09 Score=94.53 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=46.1
Q ss_pred ccchhhhhcccCCCCH--HHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRGCSR--SELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~--~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+||.+|||.++++. .+|+++||++++++||||++. ...|+.|++||++|.+
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------------------------~e~f~~I~~AYevL~d 61 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKMED 61 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------------------------TTTTHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------------------------HHHHHHHHHHHHHHCC
Confidence 3579999999999998 999999999999999999654 2459999999996544
No 219
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.79 E-value=5.6e-09 Score=100.75 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=54.0
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||.+|||.++++..+|+++||++++++|||+++... .+.+.|+.|++||++ ++++..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~--------------------~~~~~f~~i~~Ay~~-L~~~~~ 60 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP--------------------NAHGDFLKINRAYEV-LKDEDL 60 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT--------------------THHHHHHHHHHHHHH-HTSHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh--------------------HHHHHHHHHHHHHHH-hCCHHH
Confidence 48999999999999999999999999999999986432 467889999999995 566665
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 61 r~~yd~ 66 (210)
T 3apq_A 61 RKKYDK 66 (210)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 220
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.76 E-value=6.3e-08 Score=105.60 Aligned_cols=138 Identities=17% Similarity=0.089 Sum_probs=111.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 166 GQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 166 G~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
+..+...|++++|+.+|++++.+... .+.|++......+..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~---------------------------------~lg~~Hp~~a~~~~n------ 356 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEP---------------------------------VFADTNLYVLRLLSI------ 356 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTT---------------------------------TBCTTSHHHHHHHHH------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH---------------------------------hcCCCCHHHHHHHHH------
Confidence 44577899999999999999987421 012444444332222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCc--
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSC-- 315 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~-- 315 (580)
.|.++..+|+|++|+.+|.++|.+.. +.++|..+..++|+|.+|..+|+|++|+..+.+|+++ -|++
T Consensus 357 ---La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 357 ---ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI 433 (490)
T ss_dssp ---HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred ---HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 29999999999999999999998731 3457889999999999999999999999999999976 4555
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 -IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 -~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+.+..++.++..++.|.+|...|+++.+-
T Consensus 434 ~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999654
No 221
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.72 E-value=2.3e-07 Score=101.21 Aligned_cols=110 Identities=7% Similarity=-0.057 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----C
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----E 312 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----d 312 (580)
..+....+.+..+..+|+|++|+..|.++|.+.. +..+|..+..+.|+|.+|..+|+|++|+..+.++|++ -
T Consensus 307 ~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 307 QFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3344455667778899999999999999998742 2346778899999999999999999999999999976 3
Q ss_pred ---CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhh
Q 008039 313 ---PSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAIL 350 (580)
Q Consensus 313 ---P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l 350 (580)
|+-...+.++|.+|..+|+|++|+..|++|+++.+..+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44466799999999999999999999999999976543
No 222
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.70 E-value=6.5e-09 Score=110.97 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
..|+++.|.+.+++. ..+.+|..+|.+++..|++++|++.|.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfik 57 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 57 (449)
T ss_dssp ------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 457899999999998 3346999999999999999999998876
No 223
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=4.8e-07 Score=92.47 Aligned_cols=177 Identities=10% Similarity=-0.011 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC-CCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSP--RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD-SGSVSS 102 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P--~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~-~~~~~~ 102 (580)
++-.|..+. ..|++++|+..+.+.|..+| .+..++...+.+++.+||++.|...++++.. ..|+. |
T Consensus 103 ~~~la~i~~---~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~----- 171 (310)
T 3mv2_B 103 LYLLATAQA---ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVS----- 171 (310)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHH-----
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccc-----
Confidence 345555555 47999999999999999998 9999999999999999999999999988431 11100 0
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC--CHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG--LMEDAMV 180 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG--~~eeAi~ 180 (580)
..+....++.-|.+.+..| ++.+|..
T Consensus 172 ----------------------------------------------------~~d~~l~~Laea~v~l~~g~~~~q~A~~ 199 (310)
T 3mv2_B 172 ----------------------------------------------------GDNEMILNLAESYIKFATNKETATSNFY 199 (310)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHTCSTTTHHHH
T ss_pred ----------------------------------------------------cchHHHHHHHHHHHHHHhCCccHHHHHH
Confidence 0001112222344466666 9999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYS 260 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~ 260 (580)
+|+++... .|+......++ + ++...|+|+
T Consensus 200 ~f~El~~~--------------------------------------~p~~~~~~lLl------------n-~~~~~g~~~ 228 (310)
T 3mv2_B 200 YYEELSQT--------------------------------------FPTWKTQLGLL------------N-LHLQQRNIA 228 (310)
T ss_dssp HHHHHHTT--------------------------------------SCSHHHHHHHH------------H-HHHHHTCHH
T ss_pred HHHHHHHh--------------------------------------CCCcccHHHHH------------H-HHHHcCCHH
Confidence 99996532 14423333333 2 788999999
Q ss_pred HHHHHHHHHHhccCCC--C----CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 261 EAIRHFSKIVDGRRGA--P----QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 261 eAi~~y~~AL~~~~~~--~----~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
+|...+..++... |. . .|.++.++.|+..+...+|+ +|.+..+++..++|+++-..
T Consensus 229 eAe~~L~~l~~~~-p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 229 EAQGIVELLLSDY-YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHSHH-HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHhc-ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999777641 11 0 25689999999999999998 89999999999999998753
No 224
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.69 E-value=3.2e-08 Score=105.61 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
|...|...+ ..|++.+|++.|.++ .++..+...+.++..+|+|++|+..++.+++
T Consensus 35 Ws~La~A~l---~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 35 WSQLAKAQL---QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444555555 679999999999774 4566889999999999999999998887653
No 225
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.69 E-value=5.8e-08 Score=83.06 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~ 326 (580)
|..++..|+|++|+..|.+++.+ .|....+|+++|.++..+|++++|+..|.+++.++|.+ ..++..+...+
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 26 GKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 99999999999999999999997 34578899999999999999999999999999998853 34444433333
No 226
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=3.2e-08 Score=83.06 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++..|++++|+..|++++++. |++..+. +..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~--~~l 44 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------------------------------------PQNPVGY--SNK 44 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHH--HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------------------CCCHHHH--HHH
Confidence 367889999999999999999999999873 4444333 233
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC--cccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ--GFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~--~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
|.+++..|+|++|+..|.+++.+. |.+. .....+++++|.++..+|+++.|+..+.+
T Consensus 45 ----------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 45 ----------AMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ----------HHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999999999999973 3210 01178899999999999999888776654
No 227
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.64 E-value=3.2e-09 Score=109.52 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||++.. ..|++.|+.|++||++ ++|+.
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------------------~~a~~~f~~i~~Ay~v-L~d~~ 84 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---------------------NDAEAKFKDLAEAWEV-LKDEQ 84 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------hHHHHHHHHHHHHHHH-hhhhh
Confidence 4689999999999999999999999999999999754 3567889999999995 66666
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 85 ~R~~YD 90 (329)
T 3lz8_A 85 RRAEYD 90 (329)
T ss_dssp ------
T ss_pred hhcccc
Confidence 444444
No 228
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=98.58 E-value=1e-08 Score=95.55 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=44.3
Q ss_pred ccchhhhhcccCCCC--HHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRGCS--RSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~--~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..+||++|||.++++ .++|++|||++++++|||++++ .+.|+.|++||++| ++
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------------------------~e~F~~I~~AYevL-sd 64 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKM-ED 64 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------------------------CTTTTHHHHHHHHH-HH
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------------------------HHHHHHHHHHHHHh-CC
Confidence 458999999999998 6999999999999999999654 13599999999965 44
Q ss_pred hh
Q 008039 473 IM 474 (580)
Q Consensus 473 ~~ 474 (580)
+.
T Consensus 65 p~ 66 (174)
T 2pf4_E 65 GV 66 (174)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 229
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.57 E-value=2.3e-07 Score=77.94 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALLLE 327 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~~ 327 (580)
|..++..|+|++|+..|++++++ .|....+|+++|.+|..+|++++|+..+.+++.+.|.. ..+...+..++.
T Consensus 14 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 14 AQEHLKHDNASRALALFEELVET-----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 99999999999999999999997 34477899999999999999999999999999997643 344444444443
No 230
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.54 E-value=5e-07 Score=96.97 Aligned_cols=103 Identities=6% Similarity=-0.120 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCc
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--------EPSC 315 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--------dP~~ 315 (580)
.+.+......|+|++|+..|.++|.+.. +..+|..+..+.|+|.+|..+|+|++|+..|.++|++ .|+-
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 3444555567999999999999998632 2346778899999999999999999999999999976 3445
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLYNAI 349 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~ 349 (580)
...+.++|.+|..+|+|++|+..|++|+++.+..
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999997554
No 231
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.53 E-value=3.8e-07 Score=73.54 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=64.1
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+.+++++|.++...|++++|+..|.+++.++|++..+++.+|.++..+|++++|+..|++++++
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999999999999999999999999999999887
No 232
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.46 E-value=1.7e-06 Score=77.31 Aligned_cols=87 Identities=8% Similarity=-0.025 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
|..+...+.+++|+..|.++.+.. ++.+++++|.+|.. .+++++|+.+|++|.+. .++.+++++|.+
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 102 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK 102 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 888888899999999999999962 67899999999999 89999999999999987 789999999999
Q ss_pred HHh----cCChhHHHHHHHHHHHH
Q 008039 326 LET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~----lg~~~eAi~~~~~al~l 345 (580)
|.. .+++++|+..|+++.++
T Consensus 103 y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 103 QYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 99999999999999765
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.44 E-value=3.1e-06 Score=90.74 Aligned_cols=103 Identities=9% Similarity=-0.007 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCc
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--------EPSC 315 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--------dP~~ 315 (580)
......+..+|+|++|+..|.++|.+.. +..++.....+.|+|.+|..+|+|++|+..|.++|.+ .|+-
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 3445667789999999999999998632 2346778899999999999999999999999999976 3444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLYNAI 349 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~ 349 (580)
...++++|.+|..+|+|++|+..|++|+++.+..
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 6679999999999999999999999999997544
No 234
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=98.43 E-value=2.1e-07 Score=87.75 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=53.4
Q ss_pred CCccchhhhh------cccC-CCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHH
Q 008039 393 TGNVDYYALI------GLRR-GCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRG 465 (580)
Q Consensus 393 ~~~~d~y~iL------gv~~-~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~A 465 (580)
....+||.+| |+.. +++..+|+++||++++++|||+++. +...|..|++|
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----------------------a~~~f~~i~~A 64 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----------------------GSEQSSTLNQA 64 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----------------------CSSGGGSHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----------------------HHHHHHHHHHH
Confidence 4567999999 4654 8999999999999999999999765 12459999999
Q ss_pred HHHhcCchhhHHHHHHHH
Q 008039 466 YSSVMSNIMDEEAAEKRR 483 (580)
Q Consensus 466 y~~l~~~~~~~~~~~~~~ 483 (580)
|++ ++++..+..+....
T Consensus 65 Y~v-L~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 65 YHT-LKDPLRRSQYMLKL 81 (181)
T ss_dssp HHH-HHSHHHHHHHHHHH
T ss_pred HHH-HcChHHHHHHHHHH
Confidence 995 56677666665543
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.37 E-value=2.9e-06 Score=72.01 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=66.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCC--CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGA--PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~--~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
|..+++.|+|..|+..|.+|+...++. .......++.++|.|+.++|+++.|+..+++++.++|++..++.+++
T Consensus 12 G~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 999999999999999999999963222 13457899999999999999999999999999999999999988776
No 236
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.33 E-value=1.4e-06 Score=71.92 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 285 YMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ-ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 285 ~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~-A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++|.++...|++++|+..|++++.++|+++. +++.+|.++..+|++++|+..|++++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 367899999999999999999999999999999 9999999999999999999999999888
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.33 E-value=4.2e-06 Score=69.99 Aligned_cols=67 Identities=16% Similarity=-0.048 Sum_probs=62.3
Q ss_pred cccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGR---IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~---~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.++.++..+|.+++..++ .++|...+.++|++||+++.+++.+|.+++..|+|++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5588999999999987766 799999999999999999999999999999999999999999999655
No 238
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.24 E-value=1.9e-05 Score=82.31 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLL 71 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~ 71 (580)
++.-.+-| -+|+.++......++.+|+.+|++||+++|+++.++..++.+++
T Consensus 193 ~~~Aydl~-Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 193 RGALLTNF-YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp SGGGHHHH-HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34344444 45677765556788999999999999999999999999999988
No 239
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.18 E-value=6.6e-05 Score=78.16 Aligned_cols=142 Identities=14% Similarity=-0.001 Sum_probs=102.8
Q ss_pred cccccchhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008039 153 NCEKEGQWRYLVLGQACCHLGL---MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE 229 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~lG~---~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd 229 (580)
.+.....|-+++.|..++..+. +.+|+.+|++++++ ||+
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------------------------------------DP~ 231 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------------------------------------SPE 231 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------------------------------------CTT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------------------------CCC
Confidence 3445667888999999988766 57899999999987 477
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHH-HHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHH
Q 008039 230 SESVSQLLSHIKLLLRRRTAAIAALDAG----LYSEAIR-HFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIAD 304 (580)
Q Consensus 230 ~~~~~~ll~~~k~~~~~k~~G~~~~~~g----~y~eAi~-~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~ 304 (580)
+..+...+..+.- ..+..+ ...+++. .+..+..+ + ..+..+.+|.-++.++...|++++|+..
T Consensus 232 ~a~A~A~la~a~~---------~~~~~~~~~~~~~~~l~~a~~a~~a~--~-~~~~~a~~~~alal~~l~~gd~d~A~~~ 299 (372)
T 3ly7_A 232 FTYARAEKALVDI---------VRHSQHPLDEKQLAALNTEIDNIVTL--P-ELNNLSIIYQIKAVSALVKGKTDESYQA 299 (372)
T ss_dssp CHHHHHHHHHHHH---------HHHHHSCCCHHHHHHHHHHHHHHHTC--G-GGTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHH---------HHhccCCCchhhHHHHHHHHHHHHhc--c-cCCcCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7666654422111 001111 1112221 22222221 1 1345788898899999989999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 305 CNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 305 ~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+.++|+ ..+|..+|.++...|++++|+..|++|+.+
T Consensus 300 l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 300 INTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999975 678999999999999999999999999988
No 240
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.14 E-value=7.5e-05 Score=84.43 Aligned_cols=208 Identities=7% Similarity=0.002 Sum_probs=146.8
Q ss_pred hhhHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 39 HSEIASAL-SLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 39 ~~d~~~Al-~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
.|+..+|. ..|++|+..+|.+...|...+......|+++.|.++|++++..+... ...+
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~--------------------~~~~ 415 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD--------------------LAAL 415 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------HHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--------------------hhhh
Confidence 46677887 99999999999999999999999999999999999999987432100 0000
Q ss_pred c---CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Q 008039 118 H---SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 118 ~---~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r 194 (580)
. |. +. -.+..+.+ .....|...+....+.|.++.|...|.+|++..+
T Consensus 416 ~~~~p~----------~~----~~~~~~~~------------~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---- 465 (679)
T 4e6h_A 416 MEDDPT----------NE----SAINQLKS------------KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---- 465 (679)
T ss_dssp HHHSTT----------CH----HHHHHHHH------------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----
T ss_pred hhccCc----------ch----hhhhhhcc------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----
Confidence 0 00 00 00000000 0011355567777888999999999999986410
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA-GLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~-g~y~eAi~~y~~AL~~~ 273 (580)
+....+. ... +..-++. ++++.|...|..+|+.
T Consensus 466 ---------------------------------~~~~~ly--i~~----------A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 466 ---------------------------------LVTPDIY--LEN----------AYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp ---------------------------------GSCTHHH--HHH----------HHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred ---------------------------------CCChHHH--HHH----------HHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 0001111 111 4444454 4599999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 274 RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP---SCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 274 ~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP---~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|....++...+......|+.+.|...|++|+...| .....|......-...|+.+.+...++++.+.+
T Consensus 500 ----~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 500 ----FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp ----HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred ----CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344677777778888889999999999999999988 356677777777788999999999999998883
No 241
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=3.2e-05 Score=68.93 Aligned_cols=99 Identities=10% Similarity=-0.067 Sum_probs=80.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
||.+|...+.+++|+.+|+++.+.. +..+ .+..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g----------------------------------------~~~a--~~~L----- 63 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN----------------------------------------SGNG--CRFL----- 63 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT----------------------------------------CHHH--HHHH-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC----------------------------------------CHHH--HHHH-----
Confidence 8999999999999999999988641 1222 2222
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcH
Q 008039 245 RRRTAAIAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 245 ~~k~~G~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
|..++. .+++.+|+..|+++.+.. ++.+++++|.+|.. .+++++|+.+|.+|++. .++
T Consensus 64 -----g~~y~~G~g~~~d~~~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~ 129 (138)
T 1klx_A 64 -----GDFYENGKYVKKDLRKAAQYYSKACGLN-------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSE 129 (138)
T ss_dssp -----HHHHHHCSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred -----HHHHHcCCCCCccHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCH
Confidence 889988 899999999999999962 67899999999999 99999999999999998 567
Q ss_pred HHHHHHHH
Q 008039 317 QALDTRAL 324 (580)
Q Consensus 317 ~A~~~ra~ 324 (580)
.+.+.++.
T Consensus 130 ~A~~~l~~ 137 (138)
T 1klx_A 130 DACGILNN 137 (138)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 77666553
No 242
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.12 E-value=1.2e-05 Score=86.11 Aligned_cols=121 Identities=11% Similarity=-0.007 Sum_probs=90.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 008039 167 QACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRR 246 (580)
Q Consensus 167 ~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~ 246 (580)
.-+...|++++|+..+++++.+.. . .+.|++......+.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~------------~---------------------~lg~~h~~~~~~~~-------- 333 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNS------------E---------------------RLPDINIYQLKVLD-------- 333 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSS------------C---------------------CCCTTSHHHHHHHH--------
T ss_pred HHHHhhccHHHHHHHHHHHHHhcc------------C---------------------cCCccchHHHHHHH--------
Confidence 346678999999999999986521 0 11244444433322
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc---CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcH--
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGR---RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSCI-- 316 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~---~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~~-- 316 (580)
..|.++..+|+|++|+.+|.++|.+. -+..+|..+..++|+|.+|..+|++++|+..+.+|+++ -|+++
T Consensus 334 -~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 334 -CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred -HHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 22899999999999999999999862 24558889999999999999999999999999999976 45554
Q ss_pred -HHHHHHHHHHHhc
Q 008039 317 -QALDTRALLLETI 329 (580)
Q Consensus 317 -~A~~~ra~~~~~l 329 (580)
+.+.+++.++..+
T Consensus 413 ~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 413 EDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 4455566665443
No 243
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.12 E-value=5e-07 Score=103.97 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=33.0
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++.++|+++||++++++||||++.. ..+.+.|+.|++||++ ++++
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~--------------------~~~~~~f~~i~~ay~~-L~~~ 77 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--------------------PNAHGDFLKINRAYEV-LKDE 77 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC-------------------------------------------CTHHHH-HHSH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHHH-HcCh
Confidence 457899999999999999999999999999999997542 3567889999999995 5556
Q ss_pred hhHHHHH
Q 008039 474 MDEEAAE 480 (580)
Q Consensus 474 ~~~~~~~ 480 (580)
..+..+.
T Consensus 78 ~~r~~yd 84 (780)
T 3apo_A 78 DLRKKYD 84 (780)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5444443
No 244
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.11 E-value=2.2e-05 Score=84.14 Aligned_cols=108 Identities=10% Similarity=0.014 Sum_probs=84.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRT 248 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~ 248 (580)
....|++++|+.+|++++.+... .+.|++......+..
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~---------------------------------~lg~~Hp~~a~~~~n--------- 345 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSS---------------------------------VFEDSNVYMLHMMYQ--------- 345 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTT---------------------------------TBCTTSHHHHHHHHH---------
T ss_pred hhhccCHHHHHHHHHHHHHHhhC---------------------------------ccChhchHHHHHHHH---------
Confidence 34568999999999999987421 012455554333322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcHHH
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSCIQA 318 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~~~A 318 (580)
.|.++..+|+|++|+.+|.++|.+.. +..+|..+..|+|+|.+|..+|+|++|+..+.+|+++ -|+++..
T Consensus 346 La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 346 AMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 29999999999999999999998732 3457889999999999999999999999999999986 5666554
No 245
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.03 E-value=0.00025 Score=71.29 Aligned_cols=84 Identities=10% Similarity=-0.035 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHh-cCC
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS-----GRIAESIADCNKTLALEPSC-IQALDTRALLLET-IRC 331 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l-----g~~~eAl~~~~~Al~ldP~~-~~A~~~ra~~~~~-lg~ 331 (580)
...|...+.++|++ ||. -....+|..+|..|... |+.+.|...|++||+++|+. +.+++..|..+.. .|+
T Consensus 179 l~~A~a~lerAleL-DP~--~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL-WPS--YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH-CTT--HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh-CCC--cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 58899999999998 332 22677999999999996 99999999999999999975 9999999999988 599
Q ss_pred hhHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLL 345 (580)
Q Consensus 332 ~~eAi~~~~~al~l 345 (580)
+++|...+++++.+
T Consensus 256 ~~~a~~~L~kAL~a 269 (301)
T 3u64_A 256 RAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999776
No 246
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.98 E-value=0.0002 Score=81.04 Aligned_cols=196 Identities=8% Similarity=-0.142 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHH-HHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCC
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVA-DMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 120 (580)
.......|++||...|.++..|...|..+...|..++|+ ..|++++..+ |.
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---P~------------------------- 376 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---PN------------------------- 376 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---TT-------------------------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---CC-------------------------
Confidence 455678999999999999999999999999999999997 9999976321 11
Q ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh--hhc
Q 008039 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR--ESI 198 (580)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~--~~~ 198 (580)
.. ..|+.++......|+++.|...|++++...+..+.. +.
T Consensus 377 -----------------------------------s~--~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~- 418 (679)
T 4e6h_A 377 -----------------------------------SA--VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED- 418 (679)
T ss_dssp -----------------------------------CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -----------------------------------CH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc-
Confidence 01 125566888889999999999999998753211110 00
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH---------HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE---------SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKI 269 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~---------~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~A 269 (580)
.|... .+..+.. -++...+.|..+.|...|.+|
T Consensus 419 ----------------------------~p~~~~~~~~~~~~~~~vWi~----------y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 419 ----------------------------DPTNESAINQLKSKLTYVYCV----------YMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp ----------------------------STTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHCHHHHHHHHHHH
T ss_pred ----------------------------cCcchhhhhhhccchHHHHHH----------HHHHHHHcCCHHHHHHHHHHH
Confidence 01110 1111111 144445678899999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 270 VDGRRGAPQGFLAECYMHRAFAYRSSGR-IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 270 L~~~~~~~~~~~a~~~~nra~a~~~lg~-~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++.. + +....+|...+..-...++ ++.|...|+++|+..|+++..+...+......|+.+.|...|++++..
T Consensus 461 ~~~~-~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 461 RRLK-K---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHTG-G---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHhc-C---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9851 1 1235667766776666654 999999999999999999999999999999999999999999999654
No 247
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.88 E-value=3.8e-05 Score=64.02 Aligned_cols=69 Identities=26% Similarity=0.252 Sum_probs=59.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
+++..+-+...|..++-........+|..+|.+||.++|.++.++.++|..++..|+|++|+..+++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677778888888744444447999999999999999999999999999999999999999999955
No 248
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.00017 Score=65.59 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=61.7
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhccCCCCCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 250 AIAALDAG---LYSEAIRHFSKIVDGRRGAPQG-FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 250 G~~~~~~g---~y~eAi~~y~~AL~~~~~~~~~-~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
|..+.+.+ ++.++|..++..++. + .| .+..++|++|.+|+++|+|++|+.+|+++|+++|+|..|...+-.
T Consensus 39 a~~Lv~S~~~~~~~~gI~lLe~ll~~-~---~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 39 AWCLVRSKYNDDIRKGIVLLEELLPK-G---SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHH-S---CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc-C---CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 88999988 778999999999995 2 13 468999999999999999999999999999999999998654433
No 249
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.75 E-value=3e-05 Score=60.11 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=42.6
Q ss_pred chhhhhcccCC---CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 397 DYYALIGLRRG---CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 397 d~y~iLgv~~~---a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
.-|.||||..+ ++.++|+++||++....||||++++ -+...|++|++.|..
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~------------------------yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF------------------------YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH------------------------HHHHHHHHHHHHHHH
Confidence 46899999999 9999999999999999999997653 346678888886543
No 250
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.59 E-value=0.00039 Score=63.28 Aligned_cols=81 Identities=11% Similarity=-0.031 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHhcCChhH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG---RIAESIADCNKTLALE-P-SCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg---~~~eAl~~~~~Al~ld-P-~~~~A~~~ra~~~~~lg~~~e 334 (580)
..+.+.|.+.+.. .+....+.++.|.|+.+.+ ++.++|..++..++.+ | +..+++|.+|..+.++|+|++
T Consensus 15 ~~~~~~y~~e~~~-----~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4555667777774 2347899999999999999 6779999999999999 7 679999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008039 335 CLHDLEHLKLL 345 (580)
Q Consensus 335 Ai~~~~~al~l 345 (580)
|+..+++++++
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999988
No 251
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.48 E-value=0.00052 Score=57.82 Aligned_cols=65 Identities=14% Similarity=-0.054 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNKTLALE-------PSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld-------P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+.-.+.+|..++..|+|..|+.++..|+... +.....+..+|.++.++|+++.|+..+++++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56677899999999999999999999999863 456889999999999999999999999999988
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.33 E-value=0.0028 Score=58.19 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
-|.++--...++..|.|+.|+-....++.+... ..+.+ +-......+.-
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~---------~~~~~----------------------sp~~~~~~l~~ 68 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN---------NPELF----------------------SPPQKYQLLVY 68 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------STTSS----------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC---------Ccccc----------------------cHHHHHHHHHH
Confidence 366777788899999999999999988877421 00110 11112222222
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
. |+.+|..|+|..|...|.++|...
T Consensus 69 l----------adalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 69 H----------ADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp H----------HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHcccHHHHHHHHHHHHHHHH
Confidence 2 999999999999999999998863
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.09 E-value=0.0043 Score=56.92 Aligned_cols=95 Identities=13% Similarity=0.001 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC--CC--CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------C----
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRR--GA--PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE------P---- 313 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~--~~--~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld------P---- 313 (580)
+....++..|.|+.|+-.+..++.+.+ ++ .......+++.+|.+++..|+|..|+..|.+||.+. |
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 337888999999999999999887631 11 122356788999999999999999999999997551 1
Q ss_pred ---------------CcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 314 ---------------SCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 314 ---------------~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
...+..|..|.||.+++++++|+..++.+
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999998765
No 254
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.06 E-value=0.0045 Score=62.14 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHc-----cChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHH
Q 008039 40 SEIASALSLLDAALALSPR--LELALELKARSLLYL-----RRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRE 112 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~--~~~~~~~rA~~l~~l-----~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (580)
+....|...+++||+++|+ +..+|..+|..|..+ |..+.|.++|+++| +++|+..
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---~LnP~~~--------------- 238 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---RYCSAHD--------------- 238 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---HHCCTTC---------------
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---HhCCCCC---------------
Confidence 6789999999999999999 778999999999996 99999999999965 4444211
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Q 008039 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH-LGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 113 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~-lG~~eeAi~~l~~al~l~ 189 (580)
...++..|..++. .|+.++|..+|++++++.
T Consensus 239 ----------------------------------------------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 239 ----------------------------------------------PDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp ----------------------------------------------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred ----------------------------------------------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 1246667998888 599999999999999763
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.85 E-value=0.1 Score=56.59 Aligned_cols=92 Identities=12% Similarity=-0.002 Sum_probs=77.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHh
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE-PSCIQALDTRALLLET 328 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld-P~~~~A~~~ra~~~~~ 328 (580)
-..+.+.|++++|+..|.+..... ...+...|..+-.+|.+.|++++|+..+.+..+.. .-+...|..+-.++..
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g----~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFG----IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC----CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 557889999999999999987741 12267788888999999999999999999987653 2256789999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
.|++++|...|++..+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998655
No 256
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.62 E-value=0.3 Score=52.67 Aligned_cols=212 Identities=10% Similarity=-0.104 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCC
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGG 121 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 121 (580)
......+|+++|...|..+..|...+..+...|..++|...|++++.. |.+. .++..-+......
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~----------~l~~~y~~~~e~~- 259 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGM----------FLSLYYGLVMDEE- 259 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSS----------HHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcH----------HHHHHHHhhcchh-
Confidence 455678999999999999999999999999999999999999997733 4322 0110000000000
Q ss_pred CCCCCCCCCCCCcccccchHHHHHHHHh------hhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh
Q 008039 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAG------LCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~------l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~ 195 (580)
.+ ...+....... .......... |...+....+.|.++.|...|+++ +.
T Consensus 260 -----------~~----~~~l~~~~~~~~~~~~~~~~~~~~~~l--w~~y~~~~~r~~~~~~AR~i~~~A-~~------- 314 (493)
T 2uy1_A 260 -----------AV----YGDLKRKYSMGEAESAEKVFSKELDLL--RINHLNYVLKKRGLELFRKLFIEL-GN------- 314 (493)
T ss_dssp -----------HH----HHHHHHHTC----------CHHHHHHH--HHHHHHHHHHHHCHHHHHHHHHHH-TT-------
T ss_pred -----------HH----HHHHHHHHHhhccchhhhhcccccHHH--HHHHHHHHHHcCCHHHHHHHHHHh-hC-------
Confidence 00 00000000000 0000111223 344456666778899999999887 32
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccC
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG-LYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g-~y~eAi~~y~~AL~~~~ 274 (580)
|.. ....+... +..-+..+ +++.|...|..++..
T Consensus 315 --------------------------------~~~-~~~v~i~~----------A~lE~~~~~d~~~ar~ife~al~~-- 349 (493)
T 2uy1_A 315 --------------------------------EGV-GPHVFIYC----------AFIEYYATGSRATPYNIFSSGLLK-- 349 (493)
T ss_dssp --------------------------------SCC-CHHHHHHH----------HHHHHHHHCCSHHHHHHHHHHHHH--
T ss_pred --------------------------------CCC-ChHHHHHH----------HHHHHHHCCChHHHHHHHHHHHHH--
Confidence 110 01111111 32333333 699999999999985
Q ss_pred CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|..+.++...+.-...+|+.+.|...++++ +.....|......-...|+.+.+...|++++..
T Consensus 350 ---~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 350 ---HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2334555666666777889999999999997 346777777777777789999988889998775
No 257
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.61 E-value=0.012 Score=51.57 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=61.7
Q ss_pred HHHHHHcCCHHH---HHHHHHHHHhccCCCCCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDAGLYSE---AIRHFSKIVDGRRGAPQG-FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~e---Ai~~y~~AL~~~~~~~~~-~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
|..+.+..+..+ +|.++...+... .| ..-.++|.+|..++++|+|..|+.+|+..|+++|+|.+|...+..+
T Consensus 42 Aw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 42 AWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888887776 999999988841 12 4778999999999999999999999999999999999987665544
Q ss_pred H
Q 008039 326 L 326 (580)
Q Consensus 326 ~ 326 (580)
-
T Consensus 118 ~ 118 (126)
T 1nzn_A 118 D 118 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 258
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.50 E-value=0.13 Score=55.74 Aligned_cols=101 Identities=9% Similarity=-0.073 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|..|-.+|.+.|++++|+.+|+...+.. ..|+......+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------------------~~Pd~~tyn~l---- 146 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------------------IQPRLRSYGPA---- 146 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------------------CCCCHHHHHHH----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------------------CCCccceehHH----
Confidence 56777889999999999999999865431 12544443333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EPS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP~ 314 (580)
-..+.+.|++++|.+.|.+..+.. ...+...|..+-.++.+.|++++|...+.+.-+. .|+
T Consensus 147 ---------I~~~~~~g~~~~A~~l~~~M~~~G----~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 147 ---------LFGFCRKGDADKAYEVDAHMVESE----VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 456789999999999999988742 1226778999999999999999999999987553 454
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.17 E-value=0.11 Score=54.40 Aligned_cols=103 Identities=20% Similarity=0.130 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC------Cc-----------ccHHHHHHHHHHHHHcCChHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP------QG-----------FLAECYMHRAFAYRSSGRIAESIADCN 306 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~------~~-----------~~a~~~~nra~a~~~lg~~~eAl~~~~ 306 (580)
..+...|......|+...|+..|.+|+.+-.... .+ ....+...++.++...|++.+++..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344447777788999999999999999732110 00 112445567788899999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 307 KTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 307 ~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.++..+|-+..+|..+-.+|...|+..+|+..|+++.+..
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 260
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.05 E-value=0.36 Score=52.00 Aligned_cols=62 Identities=15% Similarity=-0.008 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-hHHHHHHHHhhh
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRR-FKDVADMLQDYI 87 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r-~~eAi~~~~~~l 87 (580)
.+...+..+...+ ..|+++.+..+|.++|...| +..+|..-..-....+. .+.....|+.++
T Consensus 13 ~aR~vyer~l~~~---P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 13 SPSAIMEHARRLY---MSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 4445555555555 34788889999999999888 66777766665555542 233444555544
No 261
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.98 E-value=0.023 Score=49.75 Aligned_cols=83 Identities=8% Similarity=-0.075 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHhcCCh
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAE---SIADCNKTLALE-P-SCIQALDTRALLLETIRCL 332 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~e---Al~~~~~Al~ld-P-~~~~A~~~ra~~~~~lg~~ 332 (580)
....+...|.+.+.. .+....+-++.|.++.+..+..+ +|..+...+..+ | ...+.+|.+|..+.++|+|
T Consensus 16 ~l~~~~~~y~~e~~~-----~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 345566667777764 22477899999999999998777 999999999887 5 6789999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|...++.++++
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999888
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.84 E-value=0.027 Score=49.64 Aligned_cols=73 Identities=10% Similarity=0.047 Sum_probs=59.0
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 250 AIAALDAGL---YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~---y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
+..+.+..+ ...+|..+...+.. .| ...-.+++.+|.++.++|+|..|..+++..|+++|+|.+|...+..+-
T Consensus 47 Aw~Lv~S~~~~d~~~GI~LLe~l~~~-~~---~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 47 AWGLIKSTDVNDERLGVKILTDIYKE-AE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHH-CG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc-Cc---chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 666666554 45789999988874 22 246789999999999999999999999999999999999876655443
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.66 E-value=0.1 Score=46.51 Aligned_cols=71 Identities=10% Similarity=0.063 Sum_probs=58.8
Q ss_pred HHHHHHcCCH---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 250 AIAALDAGLY---SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 250 G~~~~~~g~y---~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+..+.+..+- .++|..++..+.. .|. ..-.++|.+|.+++++|+|.+|..+|+..|+++|+|.+|...+..
T Consensus 46 Aw~Lv~S~~~~di~~GI~LLe~l~~~-~~~---~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 46 AWGLIKSTDVNDERLGVKILTDIYKE-AES---RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHH-CCS---THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc-Ccc---chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 7778877654 5799999998884 332 367899999999999999999999999999999999998654443
No 264
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.46 E-value=0.55 Score=52.76 Aligned_cols=113 Identities=16% Similarity=-0.031 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
|-.+|..+...|+++.|+.+|.++-... .+..++....
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~~d~~------------------------------------------~l~~l~~~~~ 721 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNAHDLE------------------------------------------SLFLLHSSFN 721 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTCHH------------------------------------------HHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHccChh------------------------------------------hhHHHHHHcC
Confidence 4568999999999999999999875442 2222222222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--H-HH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--I-QA 318 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~-~A 318 (580)
....+...+..+...|++..|...|.+.=+. -..-.+|..+++|++|+....+ ..|.. . ..
T Consensus 722 ~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~-------------~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~ 785 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGKFNLAFNAYWIAGDI-------------QGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDI 785 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH-------------HHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHcCCH-------------HHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHH
Confidence 2233334477777788888887776543221 1224556778888888876554 45544 3 34
Q ss_pred HHHHHHHHHhcCCh
Q 008039 319 LDTRALLLETIRCL 332 (580)
Q Consensus 319 ~~~ra~~~~~lg~~ 332 (580)
....+.-+...|++
T Consensus 786 ~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 786 VTKWKENLILNGKN 799 (814)
T ss_dssp HHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhccch
Confidence 44445555666654
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.22 E-value=0.074 Score=46.88 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.++--+..|+.|+......+...++.++...+..+| .....++.+|..+..+|+|++|...++.. |+..|++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l---L~~eP~N~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL---FEHERNNK 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH---HTTCTTCH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH---HhhCCCCH
Confidence 345566889999998889999999999999999999 56899999999999999999999999994 46666544
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.97 E-value=0.11 Score=46.25 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
..+--+..|+.|+......+...++.+++..+.-+| +...+++.+|..+..+|+|++|..+++.. |+..|++.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l---L~~eP~n~ 111 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL---FEHERNNK 111 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH---HHTCCCCH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH---HhcCCCcH
Confidence 444566889999998889999999999999999999 67899999999999999999999999994 46666544
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.88 E-value=4.4 Score=42.27 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
..++..+|..|...|++++-.+.+....|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667899999999999999998877543
No 268
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.93 Score=51.40 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
..++.--+.-++..|+|+-|+....+|+.+-|.....|+.++.+|..+|+|+.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455555777778999999999999999999999999999999999999999999887766
No 269
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.48 E-value=2 Score=44.70 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH--HH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI--KL 242 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~--k~ 242 (580)
.|......|+.+.|+..|.+++.+ |..+.+... ++...+......+ ..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L-----------~rG~~L~~~-------------------~~~~w~~~~r~~l~~~~ 170 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALRE-----------WRGPVLDDL-------------------RDFQFVEPFATALVEDK 170 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-----------CCSSTTGGG-------------------TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh-----------cCCCCCCCC-------------------CchhHHHHHHHHHHHHH
Confidence 345556679999999999999876 223222100 1111111111111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
+......+..+...|++.+|+..+..++.. +|++-.+|..+-.++...|+..+|+..|.+.-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFE-----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233445577888999999999999999997 567888999999999999999999999887644
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.79 E-value=6.9 Score=40.77 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=100.4
Q ss_pred HHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHH
Q 008039 65 LKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKK 144 (580)
Q Consensus 65 ~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k 144 (580)
.+|..|+..|+|.+|+.++.+.+..|+... | +
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d-----------------------------------------------~ 135 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLD-D-----------------------------------------------K 135 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-C-----------------------------------------------T
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccc-c-----------------------------------------------c
Confidence 589999999999999999998775543310 0 0
Q ss_pred HHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008039 145 KVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPP 224 (580)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 224 (580)
.. ....|....+.|+.+|++..+...|.++...... +
T Consensus 136 ~~-----------llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a--------------------------------i 172 (394)
T 3txn_A 136 NL-----------LVEVQLLESKTYHALSNLPKARAALTSARTTANA--------------------------------I 172 (394)
T ss_dssp HH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------------------S
T ss_pred hh-----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--------------------------------C
Confidence 00 1124666788999999999999999999877532 0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHH
Q 008039 225 RTMTESESVSQLLSHIKLLLRRRTAAIAAL-DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIA 303 (580)
Q Consensus 225 ~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~-~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~ 303 (580)
..+|.-...... ..|..++ ..++|.+|...|-++...-+....+....++...+.|-+-+++..+--.
T Consensus 173 ~~~p~i~a~i~~-----------~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~ 241 (394)
T 3txn_A 173 YCPPKVQGALDL-----------QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQ 241 (394)
T ss_dssp CCCHHHHHHHHH-----------HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCHHHHHHHHH-----------HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 011211111111 2388888 8999999999999997532221123334556667778887777433222
Q ss_pred HHH-H-HHhcCCCcHHHHHHHHHHHHhcCChh
Q 008039 304 DCN-K-TLALEPSCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 304 ~~~-~-Al~ldP~~~~A~~~ra~~~~~lg~~~ 333 (580)
... . ....+.....++..+..++. .+++.
T Consensus 242 ~l~~~~~~~~~~pei~~l~~L~~a~~-~~dl~ 272 (394)
T 3txn_A 242 LVSGKLAITYSGRDIDAMKSVAEASH-KRSLA 272 (394)
T ss_dssp HHHSHHHHTTCSHHHHHHHHHHHHHH-TTCHH
T ss_pred HhccccccccCCccHHHHHHHHHHHH-hCCHH
Confidence 111 1 12222223455666666653 34443
No 271
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.58 E-value=8.6 Score=40.63 Aligned_cols=217 Identities=18% Similarity=0.081 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALA------LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~------l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~ 94 (580)
+.+++-+..+..+ ..|++..|++.+-..-. -.+....++.....+++..++++...+.+.-.. +..
T Consensus 15 ~~~~~~~~~~~~l----~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kkr- 86 (445)
T 4b4t_P 15 QILKEEFPKIDSL----AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KKH- 86 (445)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TTT-
T ss_pred HHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHh-
Confidence 3667777778776 36899999987743222 235567788888899999999988766544311 110
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHH--HHHHhhhcccc-c-----cchhHHHHHH
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKK--KVMAGLCRNCE-K-----EGQWRYLVLG 166 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k--~~~~~l~~~~~-~-----~~~~~~~~LG 166 (580)
+.. -.+.++.-......+.... ..+... .++..+..-.. . +.+.....|+
T Consensus 87 ----~ql-k~ai~~~V~~~~~~l~~~~-----------------~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La 144 (445)
T 4b4t_P 87 ----GQL-KLSIQYMIQKVMEYLKSSK-----------------SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLV 144 (445)
T ss_dssp ----TTS-HHHHHHHHHHHHHHHHHHC-----------------TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHH
T ss_pred ----hhh-HHHHHHHHHHHHHHHhcCC-----------------chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 000 0011111122222221110 001111 22222211111 1 1122235689
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 008039 167 QACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRR 246 (580)
Q Consensus 167 ~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~ 246 (580)
.+|...|++.+|...++....=. . ..++....+..++
T Consensus 145 ~i~e~~g~~~eA~~iL~~l~~Et--------~--------------------------~~~~~~~kve~~l--------- 181 (445)
T 4b4t_P 145 EIKKEEGKIDEAADILCELQVET--------Y--------------------------GSMEMSEKIQFIL--------- 181 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH--------C--------------------------SSSCHHHHHHHHH---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHH--------H--------------------------hcccHHHHHHHHH---------
Confidence 99999999999999998765210 0 0112222233333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--cCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDG--RRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~--~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.....++..++|..|...++++... ..+.+.......+...|..+...++|.+|-.+|..++..
T Consensus 182 -~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 182 -EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3477889999999999999987431 112223345677788899999999999999999888754
No 272
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.51 E-value=6.6 Score=43.75 Aligned_cols=75 Identities=11% Similarity=-0.123 Sum_probs=46.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..+.+.|+++.|+.+|.++=.. -.+..++...|+.+........+.. ...+-. ...++..+
T Consensus 688 a~~al~~~~~~~A~~~y~~~~d~-------------~~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~----A~~~~~~~ 749 (814)
T 3mkq_A 688 GDASLQRFNFKLAIEAFTNAHDL-------------ESLFLLHSSFNNKEGLVTLAKDAET-TGKFNL----AFNAYWIA 749 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCH-------------HHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHH----HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHccCh-------------hhhHHHHHHcCCHHHHHHHHHHHHH-cCchHH----HHHHHHHc
Confidence 88999999999999999987443 1223344446666554444333333 233222 23356667
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
|++++|++.|.+.
T Consensus 750 g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 750 GDIQGAKDLLIKS 762 (814)
T ss_dssp TCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc
Confidence 8888888777655
No 273
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.91 E-value=3.1 Score=37.42 Aligned_cols=103 Identities=11% Similarity=-0.034 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhccCCCCCc---ccHHHHHHHHHHHHHcCChH
Q 008039 229 ESESVSQLLSHIKLLLRRRTAAIAALDAGLY------SEAIRHFSKIVDGRRGAPQG---FLAECYMHRAFAYRSSGRIA 299 (580)
Q Consensus 229 d~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y------~eAi~~y~~AL~~~~~~~~~---~~a~~~~nra~a~~~lg~~~ 299 (580)
+++.+..++.. +-+.|+. +.-++.|++|+...+|.... ...-+|.+.| .+..+++.+
T Consensus 12 ~yd~W~~yl~l-------------lE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d 77 (161)
T 4h7y_A 12 NPEDWLSLLLK-------------LEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPD 77 (161)
T ss_dssp SHHHHHHHHHH-------------HHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGG
T ss_pred CHHHHHHHHHH-------------HHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHH
Confidence 55667666543 2233666 88889999999965443111 1234555555 446779999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 300 ESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 300 eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|...|..++.+...+.+.|...|+--...|++..|...+.+++.+
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999876
No 274
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.90 E-value=14 Score=33.95 Aligned_cols=28 Identities=21% Similarity=0.102 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
.|-.||......|+++-|..+|+++-.+
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 3667899999999999999999986533
No 275
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.09 E-value=16 Score=33.59 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhh-hhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPS-LKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
.|+|..++-++. +-+-......++.||-.+++|..|+.++++.|.. .+.+|+
T Consensus 46 ngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~---------------------- 98 (242)
T 3kae_A 46 NGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD---------------------- 98 (242)
T ss_dssp TTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC----------------------
T ss_pred cchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc----------------------
Confidence 578888776653 3345677778999999999999999999986621 111111
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
.|..+.||=+... +..+-+..+|..+..+|+.++||.+|......
T Consensus 99 ------------~d~~~~~ffvd~~--------------DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 99 ------------VDARIQEMFVDPG--------------DEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp ------------CCHHHHTTSCCTT--------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cccccceeeeccc--------------hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 1222222222111 12234667899999999999999999887654
No 276
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.02 E-value=4.8 Score=37.08 Aligned_cols=44 Identities=14% Similarity=0.004 Sum_probs=39.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDY 86 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~ 86 (580)
+.|+++.|+++.... ++...|..+|..-+..|+++=|..+|++.
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 578999999887655 67899999999999999999999999983
No 277
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.88 E-value=14 Score=33.16 Aligned_cols=36 Identities=6% Similarity=-0.185 Sum_probs=28.2
Q ss_pred HhcCCCcHHHHHHHHHHHHHccCh------HHHHHHHHhhhh
Q 008039 53 LALSPRLELALELKARSLLYLRRF------KDVADMLQDYIP 88 (580)
Q Consensus 53 l~l~P~~~~~~~~rA~~l~~l~r~------~eAi~~~~~~l~ 88 (580)
|-++|.++..|..-...+-..|.. +..++.|++++.
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 457899999999998888888998 888899998773
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.09 E-value=2.6 Score=44.46 Aligned_cols=96 Identities=7% Similarity=-0.112 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCc---HHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL---EPSC---IQALDT 321 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l---dP~~---~~A~~~ 321 (580)
..|..+++.|++++|++.|.++...+-. ......++.+.-.+++..++|..+...+.++-.+ .++. .+....
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 4499999999999999999999886422 3447788999999999999999999999998655 2221 233455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.++...++|.+|...|-.+..-
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhcc
Confidence 677888999999999988777443
No 279
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=83.12 E-value=14 Score=34.02 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH--hc---------------C
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL--AL---------------E 312 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al--~l---------------d 312 (580)
+..++-.|.|..++-++. .++ .....+..+.||.++++|..|+...+..| .+ |
T Consensus 40 ~I~LyyngEY~R~Lf~L~---~lN-------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLH---KLN-------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp HHHHHHTTCHHHHHHHHH---TCC-------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred hhhhhhcchHhHHHHHHH---hcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 788899999999877654 331 56777788999999999999999999999 22 3
Q ss_pred CCcHHH-HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 313 PSCIQA-LDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 313 P~~~~A-~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.+.+- +..+|.++...|+.+||+..|......
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 444444 456799999999999999999876443
No 280
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.06 E-value=38 Score=33.95 Aligned_cols=28 Identities=7% Similarity=-0.270 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 008039 313 PSCIQALDTRALLLETIRCLPDCLHDLE 340 (580)
Q Consensus 313 P~~~~A~~~ra~~~~~lg~~~eAi~~~~ 340 (580)
-.++..|...|..|..-+++.+|...|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3678889999999999999999888774
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=82.68 E-value=2.5 Score=34.18 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=45.7
Q ss_pred cCCCcHHH--HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 311 LEPSCIQA--LDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 311 ldP~~~~A--~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
+||....| +..+|.-.-..|+|++|+..|..++++.-..+...+ ++. +...+..++.+...++..++..+
T Consensus 9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~--d~~------~k~~lr~K~~eYl~RAE~LK~~l 80 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK--DNT------KRCNLREKISKYMDRAENIKKYL 80 (86)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544433 455666667899999999999999998765554432 221 12235556777788888887644
Q ss_pred h
Q 008039 389 A 389 (580)
Q Consensus 389 ~ 389 (580)
.
T Consensus 81 ~ 81 (86)
T 4a5x_A 81 D 81 (86)
T ss_dssp H
T ss_pred H
Confidence 3
No 282
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=82.41 E-value=3 Score=44.90 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 285 YMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 285 ~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
+.++|....-...+..|..+|.+|+.++|++..+|..+|.+....|++-+|+-.|-++
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555555555555555554
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.46 E-value=11 Score=36.97 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
...+++.|+.++|+......|+. .|.++.+...+-..+.-.|+|+.|+..++.+.+++|+....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~-----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA-----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 44678899999999999999996 56688888889999999999999999999999999988554
No 284
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.19 E-value=3 Score=47.28 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=47.6
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.++.-|+ ..|+++-|+.+..+|+.+.|..=..|..+|.||..+|+|+.|+-.+.-
T Consensus 342 ~Qa~FLl---~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 342 IQTNFLL---NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHh---ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3444455 468999999999999999999999999999999999999999975543
No 285
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.51 E-value=47 Score=33.62 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 299 AESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 299 ~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
.+||.+..+.=...-.+++.+...|..|.+.++|.+|...|
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34555544421223467888888888888888888887766
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.36 E-value=8.5 Score=40.38 Aligned_cols=104 Identities=12% Similarity=0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|..|+..|+++.|++.|.+.....+. +. ..+...+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------------------------------------~~-~kid~~l~~- 174 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------------------------------------TG-AKIDVMLTI- 174 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------------------------------------CC-SHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------------------------------------hH-HHHHHHHHH-
Confidence 4677999999999999999999997754210 11 122223322
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ-GFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~-~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
...++..++|..+...+.++-.+.+...+ .....+...-|..++..++|.+|-..|-.++..
T Consensus 175 ---------irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 175 ---------ARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp ---------HHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 55677889999999999999765322222 223456667788889999999999999888755
No 287
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.84 E-value=67 Score=33.60 Aligned_cols=138 Identities=12% Similarity=0.015 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.....|...+++..|...+.++....-. .+.+......+
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~-----------------------------------~~~~~~lk~~~--- 220 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFK-----------------------------------NPKYESLKLEY--- 220 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------------------------------SSCCHHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc-----------------------------------cCCcHHHHHHH---
Confidence 4556678899999999999999987532100 01112111111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL-AECYMHRAFAYRSSGRIAESIADCNKTLALEPS--CIQ 317 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~-a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--~~~ 317 (580)
..-.|..+...++|.+|-.+|..+.........+.. ..++.....| .-+..+..=..+...-+..++. ...
T Consensus 221 -----~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~-~iLa~~~~~~~~ll~~~~~~~~~~~l~ 294 (445)
T 4b4t_P 221 -----YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF-LVLSPYGNLQNDLIHKIQNDNNLKKLE 294 (445)
T ss_dssp -----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-HHHSSCSSTTHHHHHSHHHHSSCHHHH
T ss_pred -----HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH-HHhCCCCchHHHHHHHHhhcccccccH
Confidence 112288888999999999999999874100001111 1222222222 2222222112222222333332 355
Q ss_pred HHHHHHHHHHh--cCChhHHHHHHHHH
Q 008039 318 ALDTRALLLET--IRCLPDCLHDLEHL 342 (580)
Q Consensus 318 A~~~ra~~~~~--lg~~~eAi~~~~~a 342 (580)
++..+..+|.. +.+|+..+..|...
T Consensus 295 ~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 295 SQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 67777777764 45666666666544
No 288
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=78.67 E-value=7.2 Score=41.93 Aligned_cols=74 Identities=15% Similarity=-0.021 Sum_probs=67.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
|....-...+..|..+|.+|+.+ .|.+...|+.+|......|+.-+|+-+|.++|.....++.|.-++..++..
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~-----~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQL-----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh-----CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 88877788899999999999998 455788999999999999999999999999999988899999999988875
No 289
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=77.89 E-value=8 Score=30.89 Aligned_cols=59 Identities=7% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQ 386 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~ 386 (580)
..+|.-.-..|+|++|+..|..++++.-..+...+ ++.. ...+..++.+...++..++.
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~--d~~~------k~~ir~K~~eY~~RAE~LK~ 81 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYR--DGST------AAIYEQMINEYKRRIEVLKE 81 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHST--TSST------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCC--CHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 44445556889999999999999998766555443 2221 12356667777777777764
No 290
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.22 E-value=5.5 Score=39.21 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=52.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 290 FAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 290 ~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+++.|+.++|+..+...|+-+|.+.+....+.+++.-.|+|+.|..-++-+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34677899999999999999999999999999999999999999999999999888
No 291
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=76.03 E-value=3 Score=33.66 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 226 TMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 226 ~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.||.+..+..+... |..+-..|+|++|+.+|..+|++
T Consensus 9 ~~~~~~~A~~lv~~----------Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 9 MDPQSTAAATVLKR----------AVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp --CHHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 46766777776666 88888999999999999999885
No 292
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=74.91 E-value=8.4 Score=30.72 Aligned_cols=59 Identities=8% Similarity=0.017 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQ 386 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~ 386 (580)
..+|.-.-..|+|++|+..|..++++.-..+...+ ++. ....+..++.+...+++.++.
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~--d~~------~k~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYP--ESV------ARTAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCT--TCT------THHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCC--CHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444445889999999999999998766665443 222 112355667777777777764
No 293
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.27 E-value=21 Score=42.29 Aligned_cols=146 Identities=8% Similarity=-0.014 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
.|..|.+|.+++..|++++|..+|+++-.- ...+.+....+....+ .....+.......+|-
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-----------~~~~~~l~~~~~~~~~-------~~~~~~~~~~l~~YY~ 903 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLV-----------LYSHTSQFAVLREFQE-------IAEKYHHQNLLSCYYL 903 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-----------CTTCCCSCSSHHHHHH-------HHHTTTSCCSSHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----------hcccchhhhhhccccc-------ccccccccccHHHHHH
Confidence 345688999999999999999999875311 0011100000000000 0000000000112222
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
++ ...+.+.|.|+.+++.-..||+..++........+|.++=..++.+|+|++|.......-. .......
T Consensus 904 hv---------~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~c 973 (1139)
T 4fhn_B 904 HL---------SKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKSC 973 (1139)
T ss_dssp HH---------HHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHHH
T ss_pred HH---------HHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHHH
Confidence 21 3445567889999999999998643332233445788889999999999988665543211 1223455
Q ss_pred HHHHHHHHHhcCCh
Q 008039 319 LDTRALLLETIRCL 332 (580)
Q Consensus 319 ~~~ra~~~~~lg~~ 332 (580)
+..+-..+.+.+..
T Consensus 974 Lr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhCCCh
Confidence 55555555555543
No 294
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.80 E-value=69 Score=37.87 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=31.2
Q ss_pred HHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 52 ALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 52 Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
.+...|.++..-+.+|++++..|++++|.++|+++.
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 445678888888999999999999999999999854
No 295
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=71.71 E-value=7.8 Score=31.61 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
+.+|.-.-..|+|++|+..|..++++.-..++..+ ++. +...+..++.+...+++.++..+
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~--~~~------~k~~l~~K~~eYl~RAE~LK~~l 79 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK--ESS------KRCVLRTKISGYMDRAENIKKYL 79 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456789999999999999998766665443 221 12235566777788887777633
No 296
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=71.62 E-value=38 Score=39.74 Aligned_cols=103 Identities=11% Similarity=0.008 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
+-.|..|-.+|++.|++++|..+|....++... . ..|+.-....+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-----G----------------------------~~PdvvTYNtL-- 171 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-----R----------------------------KLLTLDMYNAV-- 171 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-----H----------------------------TTCCHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-----C----------------------------CCCCHhHHHHH--
Confidence 445777888999999999999999775433110 0 01433333333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhc
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI-AESIADCNKTLAL 311 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~-~eAl~~~~~Al~l 311 (580)
-+.+.+.|++++|++.|.+-.+.. ..| +...|+.+-.++.+.|+. ++|...+++...-
T Consensus 172 -----------I~Glck~G~~~eA~~Lf~eM~~~G---~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 172 -----------MLGWARQGAFKELVYVLFMVKDAG---LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp -----------HHHHHHHTCHHHHHHHHHHHHHTT---CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHhCCCHHHHHHHHHHHHHcC---CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 567889999999999999988741 122 677788888899999985 6788888887654
No 297
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=67.43 E-value=10 Score=30.13 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
..+|.-.-..|+|++|+..|..+++++-..++..+ ++. +...+..++.+...++..++..+
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~--~~~------~k~~l~~k~~eYl~RAE~Lk~~l 77 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEK--NPK------SKDLIRAKFTEYLNRAEQLKKHL 77 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455789999999999999998766554442 222 11235556777777777777543
No 298
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.68 E-value=16 Score=30.99 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCC----CCCccccc
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRK----LPGPAWKR 362 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~----~p~~~w~~ 362 (580)
|+.|..+.+++|.+|. .|+-+.|+..|++.+.-.+..+.-.. -.|+.|.+
T Consensus 19 h~~AF~~Is~AL~~DE---------------~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~ 72 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDE---------------LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWES 72 (116)
T ss_dssp HHHHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHH
T ss_pred HHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 6778888888888774 27788888888887766555444332 34677754
No 299
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=64.45 E-value=15 Score=31.33 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
+|.-.-..|+|++|+..|..+++++-..++... +++. ....+..++.+.+.+++.++..+
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~-~~~~------~k~~lr~K~~eYl~RAE~LK~~l 83 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEA-QGDK------AKQSIRAKCTEYLDRAEKLKEYL 83 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSC-CCHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcc-CCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445779999999999999998766554331 1111 11235556777777777777644
No 300
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=64.43 E-value=55 Score=38.39 Aligned_cols=93 Identities=10% Similarity=-0.029 Sum_probs=72.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EPSCIQALDTRALLLE 327 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP~~~~A~~~ra~~~~ 327 (580)
-+.+.+.|+.++|...|.+..+..... ...+...|+-+-..|.+.|++++|+..|++..+. .| +.-.|..+-.++.
T Consensus 134 IdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glc 211 (1134)
T 3spa_A 134 FKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMG 211 (1134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHH
Confidence 678899999999999997654320000 1126788999999999999999999999998764 45 6778888888999
Q ss_pred hcCCh-hHHHHHHHHHHH
Q 008039 328 TIRCL-PDCLHDLEHLKL 344 (580)
Q Consensus 328 ~lg~~-~eAi~~~~~al~ 344 (580)
+.|+. ++|...|+...+
T Consensus 212 K~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 212 RQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHH
Confidence 99985 688888887744
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.38 E-value=96 Score=33.30 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCC-CCChHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRT-MTESESVSQLLSHI 240 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~-dPd~~~~~~ll~~~ 240 (580)
+..+-..|.+.+.++.|..+..++.- |.. -+....+..++=.
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~f------------------------------------P~~~~sn~q~~rY~YY~- 276 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLEY------------------------------------PHTDVSSSLEARYFFYL- 276 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHCS------------------------------------CTTTSCHHHHHHHHHHH-
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCcC------------------------------------CcccCCHHHHHHHHHHH-
Confidence 44567789999999999999887530 000 0222334433333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ--GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--- 315 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~--~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--- 315 (580)
|..+.-+++|.+|.+++..|+...++... .+...++-.+-.|.+-+|++.+ +.+-..|..
T Consensus 277 ---------GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~------r~lf~q~~l~~~ 341 (523)
T 4b4t_S 277 ---------SKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE------LSFFHQSNMQKS 341 (523)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC------HHHHTTTSCHHH
T ss_pred ---------HHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC------hHHhhchhHHHH
Confidence 99999999999999999999986433211 2234455555666666788664 222233444
Q ss_pred HHHHHHHHHHHHhcCChh
Q 008039 316 IQALDTRALLLETIRCLP 333 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~ 333 (580)
...|+.++.++ +.|+..
T Consensus 342 L~pY~~Lv~Av-r~GdL~ 358 (523)
T 4b4t_S 342 LLPYYHLTKAV-KLGDLK 358 (523)
T ss_dssp HHHHHHHHHHH-HHTCHH
T ss_pred HHHHHHHHHHH-HcCCHH
Confidence 34577788876 456653
No 302
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=61.68 E-value=9.1 Score=31.15 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhhhh
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIPSL 90 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l 90 (580)
+..+.-||..++.-|+|+|||++.+++...|
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4556679999999999999999999976443
No 303
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=60.84 E-value=9.6 Score=42.47 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHH
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVA 80 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi 80 (580)
..+..|+..+ ..|+|.-|.++++.++..+|.+..+..++|.+|.++|.-.+..
T Consensus 451 ~~~~~a~~~~---~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~ 503 (658)
T 2cfu_A 451 RLLEQARASY---ARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENA 503 (658)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccCh
Confidence 3556666666 5799999999999999999999999999999999998655544
No 304
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.70 E-value=13 Score=30.35 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhh
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLYNAIL 350 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l 350 (580)
+-.+-+++..+...|+|++||.+.+++..+...++
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAm 49 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM 49 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888888888888888876644443
No 305
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=57.61 E-value=19 Score=28.72 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.+..+-.+|...=+.|+|.+|+.+|..+|+.
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555588888999999999999999885
No 306
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=54.71 E-value=19 Score=28.55 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.+..+-.+|...=+.|+|.+|+.+|..+|+.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455578888889999999999888875
No 307
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=53.21 E-value=2.6e+02 Score=30.60 Aligned_cols=85 Identities=9% Similarity=-0.121 Sum_probs=52.2
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
++..+...++...+.+.+.. .. ...+.-.++...++.|++..|...+.+.-.-......+.|-+|.++..+|+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~--~~----~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~ 335 (618)
T 1qsa_A 262 LMGNDVTDEQAKWRDDAIMR--SQ----STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE 335 (618)
T ss_dssp SCSTTCCHHHHHHHHHHHHT--CC----CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCChHHHHHHHhcccc--CC----ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH
Confidence 33444355666666665542 11 1112222333344568888888888765443335677788888888888888
Q ss_pred hHHHHHHHHHH
Q 008039 333 PDCLHDLEHLK 343 (580)
Q Consensus 333 ~eAi~~~~~al 343 (580)
++|...|+++.
T Consensus 336 ~~a~~~~~~~a 346 (618)
T 1qsa_A 336 AEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887773
No 308
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=50.73 E-value=22 Score=27.69 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=33.3
Q ss_pred cccchhhhHHH----HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHH
Q 008039 15 WWLSNRKIVDK----YIRDARTLIATQEHSEIASALSLLDAALALSPRLELAL 63 (580)
Q Consensus 15 ~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~ 63 (580)
|..++.+.++. -+..|..++ ..|++++|+.+|-+||.+.|.-...+
T Consensus 5 p~~~d~e~~e~~Fl~eV~~GE~L~---~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 5 SDLKDAEAVQKFFLEEIQLGEELL---AQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 44455555555 345667777 57889999999999999998875554
No 309
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=49.11 E-value=44 Score=26.95 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHH-HHHHHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECY-MHRAFAYRS 294 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~-~nra~a~~~ 294 (580)
+++..+..+|..+|+.++|.+|...|.++..+. . .+.--.++ +.++.|..+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t--e-n~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS--D-NEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc--c-CHHHHHHHHHHHHHHHHH
Confidence 455556677999999999999999999999752 2 22233344 666666554
No 310
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=45.22 E-value=30 Score=28.08 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.+|...-+.|+|++|+.+|..+|++
T Consensus 20 ~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 20 KRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3377778889999998888888774
No 311
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=44.87 E-value=31 Score=27.29 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=20.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
+|...-..|+|++|+.+|..++++
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 377777889999999999988885
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.29 E-value=3.4e+02 Score=31.23 Aligned_cols=26 Identities=8% Similarity=-0.123 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTG 185 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~a 185 (580)
|.-|.+|.+|...|++++|..+|+++
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45688999999999999999999975
No 313
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=43.24 E-value=2.7e+02 Score=27.89 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.|-.++..|+|.+|+..|..+|..
T Consensus 120 ~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 120 EGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 399999999999999999998764
No 314
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=42.04 E-value=26 Score=28.69 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=34.3
Q ss_pred ccccchhhhHHHH----HHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHH
Q 008039 14 HWWLSNRKIVDKY----IRDARTLIATQEHSEIASALSLLDAALALSPRLELAL 63 (580)
Q Consensus 14 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~ 63 (580)
.|..++.+.++.| +..|..++ ..|+++.|+.+|-.||.+.|.-...+
T Consensus 7 ~p~~~d~e~~e~~Fl~eV~lGE~L~---~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 7 LPDLKDAEAVQKFFLEEIQLGEELL---AQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666653 45667777 57889999999999998888764443
No 315
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=41.85 E-value=31 Score=29.29 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.+|...-..|+|++|+.+|..+|++
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3366777788888888888888774
No 316
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.50 E-value=3.8e+02 Score=29.21 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCC----CCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFP----FSKFPVSNNHQTPPATPPRTMTESESV 233 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~----~~~l~~~~~~~~~~~~~~~~dPd~~~~ 233 (580)
..|.|+ +|.++..+|+.++|...|+++..- .+|. ...++.....+.. . ..+.....
T Consensus 319 ~r~~YW-~~ra~~~~g~~~~a~~~~~~~a~~--------------~~fYg~lAa~~Lg~~~~~~~~---~--~~~~~~~~ 378 (618)
T 1qsa_A 319 DEWRYW-QADLLLERGREAEAKEILHQLMQQ--------------RGFYPMVAAQRIGEEYELKID---K--APQNVDSA 378 (618)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHTS--------------CSHHHHHHHHHTTCCCCCCCC---C--CCSCCCCH
T ss_pred HhHHHH-HHHHHHHcCCHHHHHHHHHHHhcC--------------CChHHHHHHHHcCCCCCCCCC---C--CChhHHhh
Confidence 345554 699999999999999999987531 1111 1112211110000 0 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 234 SQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 234 ~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
... ......+..++..|....|...+...+... ...-...++......|.+..++....+
T Consensus 379 ~~~-------~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~-------~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 379 LTQ-------GPEMARVRELMYWNLDNTARSEWANLVKSK-------SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHH-------SHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcc-------ChHHHHHHHHHHCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 000 111223778899999999999888877631 123334567777788888888765543
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.67 E-value=1.4e+02 Score=34.59 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=33.3
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 50 DAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 50 ~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
...+...|.++..-+.+|++|+.+|++++|.++|+++-
T Consensus 830 ~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 830 MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34667888888888999999999999999999999954
No 318
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=44.94 E-value=6.5 Score=43.94 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHH
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVAD 81 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~ 81 (580)
.++.|+..+ ..|||.-|.++++.++..+|.+..+..++|.+|.++|.-.+...
T Consensus 464 ~~~~a~~~~---~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~~ 516 (668)
T 2yhe_A 464 VLKQMRAAI---DKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTENAL 516 (668)
Confidence 444555555 57999999999999999999999999999999999998776653
No 319
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=38.65 E-value=1.8e+02 Score=29.14 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=22.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
.|-.++..|+|.+|+..|..+|..
T Consensus 108 ~gyk~~t~gKf~eAl~~Fr~iL~~ 131 (320)
T 3mkr_B 108 LCYQLTTVGKFEEAVEKFRSILLS 131 (320)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 399999999999999999999875
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.48 E-value=53 Score=35.31 Aligned_cols=66 Identities=11% Similarity=-0.007 Sum_probs=50.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
-..|...+.|+.|.....++.-.....+.......+|..|.++.-.++|.+|..++..|+..-|..
T Consensus 238 LRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 238 LRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 446788999999999999885310001122346778889999999999999999999999987754
No 321
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=35.91 E-value=46 Score=26.83 Aligned_cols=52 Identities=4% Similarity=-0.126 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCC-CCcccc
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKL-PGPAWK 361 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~-p~~~w~ 361 (580)
|+.|..+.+++|.+|..+ ..|+-++|+..|++.+.-....+.-+.. .|+.|.
T Consensus 13 h~~AF~~Is~aL~~DE~~------------~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we 65 (89)
T 3eab_A 13 HKQAFEYISIALRIDEDE------------KAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCE 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHS------------CSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHH
T ss_pred HHHHHHHHHHHHHhhhcc------------cCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHH
Confidence 566777777777665210 1277778888888776554433332211 356663
No 322
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=32.60 E-value=1.1e+02 Score=23.64 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
...-..|..+...|++++|+.+|.+||.++
T Consensus 18 l~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 444566999999999999999999999985
No 323
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=31.68 E-value=65 Score=34.18 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 57 PRLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 57 P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
+.-..++.++|++++.+++|++|++.++++|.
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44567899999999999999999999999884
No 324
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=30.81 E-value=66 Score=33.66 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
.-..++.++|++++.+++|++|++.++++|.
T Consensus 188 tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 188 NKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4457899999999999999999999999884
No 325
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=30.45 E-value=65 Score=35.70 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
......+|...+..|+|.-|...++.++..+|++.+|...++.+|.++|.-.+.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 345667888889999999999999999999999999999999999988865443
No 326
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=30.43 E-value=1.9e+02 Score=25.55 Aligned_cols=79 Identities=10% Similarity=-0.116 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS-SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
-|+...-+.+|-+.=.. .=|.++|.-++- .|+-+.=-..+...+.-++-++..++.+|.+|.++|+..+
T Consensus 74 C~NlKrVi~C~~~~n~~----------se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 74 CQNLKSVVECGVINNTL----------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERD 143 (172)
T ss_dssp CSCTHHHHHHHHHTTCC----------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcHHHHHHHHHHhcch----------HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhh
Confidence 45555666666543221 114455544433 3443332233333345566678888888888888888888
Q ss_pred HHHHHHHHHH
Q 008039 335 CLHDLEHLKL 344 (580)
Q Consensus 335 Ai~~~~~al~ 344 (580)
|-..+.+|.+
T Consensus 144 a~eLl~~AC~ 153 (172)
T 1wy6_A 144 ATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 327
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=30.28 E-value=71 Score=33.50 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=28.2
Q ss_pred CCcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 57 PRLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 57 P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
+.-..++.++|++++.+++|++|++.++++|.
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999999884
No 328
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=28.07 E-value=12 Score=36.37 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcC
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASG 391 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~ 391 (580)
..+|.-+-..|+|++|+..|+.++++.-..++..+ ++. +...+..++.+...+++++|..+...
T Consensus 27 v~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~--d~~------~k~~lr~Ki~eYl~RAE~LK~~L~k~ 90 (257)
T 2ymb_A 27 LKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK--DNT------KRCNLREKISKYMDRAENIKKYLDQE 90 (257)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC--CHH------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444445779999999999999887544443222 111 12345566777888888887765543
No 329
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=27.40 E-value=2e+02 Score=25.40 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
+|...|...+. .+|+-++=-..+...+.-+|-++..+...|.+|-.+|..++|-+.+.++-
T Consensus 92 e~vd~ALd~lv--~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 92 EHVNKALDILV--IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 45566655443 34444444445555566777789999999999999999999999888743
No 330
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=25.40 E-value=98 Score=32.49 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
.-..++.++|++++..++|++|++.++++|.
T Consensus 200 tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 200 NYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4457899999999999999999999999884
No 331
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=24.46 E-value=1.5e+02 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
...-..|..++..|+++.|+.||.+||.++
T Consensus 21 l~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 21 LEEIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 344556999999999999999999999974
No 332
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=24.33 E-value=74 Score=33.45 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 40 SEIASALSLLDAAL------ALSPRLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 40 ~d~~~Al~~~~~Al------~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
.|+++|+..+..-- .-.+.-..++.++|++++.+++|++|++.++++|.
T Consensus 165 ~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 165 DDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45566666652110 11355668899999999999999999999999873
No 333
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=23.84 E-value=3.9e+02 Score=23.83 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=56.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAE-SIADCNKTLALEPSCIQALDTRALLLE 327 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~e-Al~~~~~Al~ldP~~~~A~~~ra~~~~ 327 (580)
.++..|-..+|.+.|..+... +| ..+....-|-+|..|.+...+.+ --......|.+..+ --+.+=.++.
T Consensus 14 ~a~~afl~~dYs~VI~~L~~~----~~--~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~yL~YWIyi 84 (161)
T 2ynq_A 14 QSTELFLQNKYSDVITTLEDY----AP--EDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQYMLYWIYI 84 (161)
T ss_dssp HHHHHHTTTCHHHHHHHHTTS----CG--GGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcC----Ch--hhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HHHHHHHHHH
Confidence 388899999999998877632 12 34466788999999999887763 33333333333221 1233446777
Q ss_pred hcCChhHHHHHHHHH
Q 008039 328 TIRCLPDCLHDLEHL 342 (580)
Q Consensus 328 ~lg~~~eAi~~~~~a 342 (580)
..|++++|+..-..+
T Consensus 85 GRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 85 GRSQSEEALELARTI 99 (161)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHhc
Confidence 889999998765543
No 334
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.66 E-value=97 Score=32.58 Aligned_cols=31 Identities=10% Similarity=-0.008 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
.-..++.++|++++..++|++|++.++++|.
T Consensus 195 tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 225 (478)
T 3hdx_A 195 NKLSAYSVLAHICAWQGNYAEAETYSAFIID 225 (478)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3457899999999999999999999999884
No 335
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=22.35 E-value=1.2e+02 Score=32.02 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
.-..++.++|++++..++|++|++.++++|
T Consensus 178 tk~aA~allarvyL~~~~~~~A~~~a~~vi 207 (481)
T 3jq1_A 178 TQGAAYAALGKIYVYEENWQEAINVLEPLT 207 (481)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHGGGG
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445789999999999999999999999977
No 336
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.21 E-value=1.3e+02 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
|..+.-.|+|+.|+.+|+.+++.
T Consensus 19 ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 19 AREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHHH
Confidence 88888899999999999999884
No 337
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.81 E-value=1.2e+02 Score=23.67 Aligned_cols=32 Identities=9% Similarity=-0.129 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhh
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLLYNAIL 350 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l 350 (580)
...+|+=|..+|+|+.|+.+|+.+++..+..+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l 46 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYL 46 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999999999987755544
No 338
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.80 E-value=2.3e+02 Score=23.86 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHhc
Q 008039 258 LYSEAIRHFSKIVDG 272 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~ 272 (580)
.|.+|..+.+++|.+
T Consensus 18 ~h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 356666666666665
No 339
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=20.14 E-value=1.3e+02 Score=31.88 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
.-..++.++|++++..++|++|++.++++|
T Consensus 180 tk~aA~allarv~L~~~~~~~A~~~a~~vi 209 (517)
T 3qnk_A 180 TKGAAYALKSRVELYDKRYEDVIKSCAEVY 209 (517)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999987
Done!