BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008040
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 341/520 (65%), Gaps = 35/520 (6%)
Query: 58 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXX 117
D+ VR ++KK+EEL G++P+ +++RTH A +L E+Y L+ EE + V+
Sbjct: 7 DQLRVRREKLKKIEEL---GVDPFGKRFERTHKAEELFELYGDLSK-EELEEQQIEVAVA 62
Query: 118 XXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRT 177
GK F ++D +G IQ+Y ++ + Q++ K+ D+GDI+GV G+M +T
Sbjct: 63 GRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKI-SDLGDIVGVRGTMFKT 121
Query: 178 EKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIV 237
+ GELS+ V+S+ LTK+L PLP+KYHGL D+++RYRQRY+D+I PE F R+ I+
Sbjct: 122 KVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLII 181
Query: 238 SEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGG 297
+R+ ++S G++EVETP++ AGGA ARPF+T+HN+L LY+RIA ELHLKR+++GG
Sbjct: 182 QSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGG 241
Query: 298 FEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTI 357
EK+YEIGR+FRNEG+STRHNPEFT +E+YEAY+D++ +M +TE ++ H A V G I
Sbjct: 242 LEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKI 301
Query: 358 DYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVI 417
Y + L WRR M + +KE G+DF +D +E A G+E +
Sbjct: 302 QYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSD----EEARELAKEHGVE------V 351
Query: 418 ESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGRE 477
+ G+++NE FE VE KL+QPTF+ +P+EISPLAK + T+RFELFI GRE
Sbjct: 352 APHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRFTDRFELFIVGRE 411
Query: 478 MANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFV 537
ANAF+EL DP+DQR R EEQ+++ ++ +D ++E +D+DF+
Sbjct: 412 HANAFTELNDPIDQRQRFEEQLKER------------------EQGNDEAHE--MDEDFL 451
Query: 538 TALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILK 577
ALEYGMPP G+G+G+DRLVMLLTNS SIRDV+ FP ++
Sbjct: 452 EALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQMR 491
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/521 (43%), Positives = 315/521 (60%), Gaps = 30/521 (5%)
Query: 58 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXX 117
D + A R K+ LR +G+ Y + TH A LQ Y A+ E +++ V+
Sbjct: 35 DENQIVAERRDKLRALRDQGIA-YPNDFQPTHHAADLQTAYAD-ADKEALEAKSLEVAIA 92
Query: 118 XXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRT 177
GK +F T++D SG IQ + + ++ +D K + D+GDI+ G + RT
Sbjct: 93 GRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKW-DLGDIVAARGVLFRT 151
Query: 178 EKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIV 237
KGELSV +L K+L PLPDK+HGL D + RYRQRYVD+I PE FR R K +
Sbjct: 152 NKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAI 211
Query: 238 SEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGG 297
+ IRK + F+EVETP+L GGA A+PFVT+HN+L +++LRIA EL+LKR+++GG
Sbjct: 212 ASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGG 271
Query: 298 FEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTI 357
FE+++EI R FRNEG+S RHNPEFT +E Y AY+DY+ +M+ TE ++ A+ G TI
Sbjct: 272 FERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATI 331
Query: 358 DYQGVEICLERPWRRETMHNLV-KEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFV 416
YQG E+ L +P+ R T+ + K A +L +D + E L+ LG + + F+
Sbjct: 332 QYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSE--LKRLGVDV-TQPAFL 388
Query: 417 IESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGR 476
+ +G L +FE E +L +PTF++DYPIE+SPLA+ AG+TERFELFI GR
Sbjct: 389 ---NAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESDTVAGITERFELFITGR 445
Query: 477 EMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDF 536
E+AN FSEL DP DQ AR ++QV Q K++ D + D D+
Sbjct: 446 EIANGFSELNDPEDQAARFKKQVEQ-------------------KDAGDEE-AMFFDADY 485
Query: 537 VTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILK 577
+ ALEYGMPP G G+GIDRLVMLLT+S +IRDV+ FP L+
Sbjct: 486 IRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLR 526
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/517 (41%), Positives = 318/517 (61%), Gaps = 35/517 (6%)
Query: 66 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXX 125
R +K+ LR +G+ + + R H+++QL E + N +E S N VS
Sbjct: 21 RREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDN-QELESLNIEVSVAGRMMTRRI 78
Query: 126 FGKLAFLTLRDDSGTIQLYCEKERLLSDQF-DQLKVFVDIGDILGVSGSMKRTEKGELSV 184
GK +F+TL+D G IQLY ++ L + DQ K + D+GDI+G G++ +T+ GELS+
Sbjct: 79 MGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKW-DLGDIIGARGTLFKTQTGELSI 137
Query: 185 LVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTV 244
+LTK+L PLPDK+HGL D + RYRQRY+D+I+ + F R+KI++ IR+ +
Sbjct: 138 HCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFM 197
Query: 245 ESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEI 304
+ GF+EVETP++Q GGA ARPF+T+HN+L D+YLRIA EL+LKR+++GGFE+++EI
Sbjct: 198 VARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEI 257
Query: 305 GRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEI 364
R FRNEG+S RHNPEFT +E+Y AY+DY ++ +TE + A V G + Y
Sbjct: 258 NRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVF 317
Query: 365 CLERPWRRETMHNLVKEA-TGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSV 423
+P+ + TM +K+ D +L N AK AL + + +E S +
Sbjct: 318 DFGKPFEKLTMREAIKKYRPETDMADLDN-FDAAK-----ALAESI----GITVEKSWGL 367
Query: 424 GNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFS 483
G ++ E+F+ V E L+QPTF+ +YP E+SPLA+ + + +T+RFE FI GRE+ N FS
Sbjct: 368 GRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFS 427
Query: 484 ELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYG 543
EL D DQ R +EQV N K A DD + + D+D+VTALEYG
Sbjct: 428 ELNDAEDQAERFQEQV---NAKAAG---------------DDEA--MFYDEDYVTALEYG 467
Query: 544 MPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQQ 580
+PP +G+G+GIDR++ML TNS +IRDVI FP ++ Q+
Sbjct: 468 LPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQK 504
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/516 (40%), Positives = 312/516 (60%), Gaps = 39/516 (7%)
Query: 66 RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXX 125
R +K+ LR +G+ + + R H+++QL + N EE + N V+
Sbjct: 21 RREKLANLREQGI-AFPNDFRRDHTSDQLHAEFDGKEN-EELEALNIEVAVAGRMMTRRI 78
Query: 126 FGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVL 185
GK +F+TL+D G IQLY ++ L +++ D+GDILG G + +T+ GELS+
Sbjct: 79 MGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIH 138
Query: 186 VNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVE 245
+LTK+L PLPDK+HGL D + RYRQRY+D+IS E + F+ R++I+S IR+ +
Sbjct: 139 CTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMV 198
Query: 246 SLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIG 305
+ GF+EVETP++Q GGA ARPF+T+HN+L D+YLRIA EL+LKR+++GGFE+++EI
Sbjct: 199 NRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEIN 258
Query: 306 RIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEIC 365
R FRNEG+S RHNPEFT +E+Y AY+DY+ ++ +TE + A + GK + Y V +
Sbjct: 259 RNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLD 318
Query: 366 LERPWRRETMHNLVK----EATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSP 421
+P+ + TM +K E D + + +A+ + +E S
Sbjct: 319 FGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIH-------------VEKSW 365
Query: 422 SVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANA 481
+G ++ E+FE V E L+QPTF+ +YP E+SPLA+ + + +T+RFE FI GRE+ N
Sbjct: 366 GLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNG 425
Query: 482 FSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALE 541
FSEL D DQ R +QV + DD + + D+D+VTALE
Sbjct: 426 FSELNDAEDQAQRFLDQVAAKD------------------AGDDEA--MFYDEDYVTALE 465
Query: 542 YGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILK 577
+G+PP +G+G+GIDR+VML TNS +IRDVI FP ++
Sbjct: 466 HGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMR 501
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/530 (36%), Positives = 293/530 (55%), Gaps = 37/530 (6%)
Query: 58 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXX 117
D +R + + +L+ G +PY +K+ S + Y HL G+ V+
Sbjct: 4 DPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGR 63
Query: 118 XXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ-FDQLKVFVDIGDILGVSGSMKR 176
GKL F LR + +Q+ S++ F + + GDI+GV G+ +
Sbjct: 64 IHAKRASG-GKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGK 122
Query: 177 TEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKI 236
T+KGELS++ +L+ L LP + GL D + RYRQRY+D+I V F R+KI
Sbjct: 123 TKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKI 182
Query: 237 VSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIG 296
++ IR ++ LGF+E+ETP++ GGA A+PF+TYHN L +LY+RIA EL+ K +++G
Sbjct: 183 ITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG 242
Query: 297 GFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLT 356
G +++YEIGR FRNEG+ HNPEFTT E Y AY+DY +M ITE++V+ + G
Sbjct: 243 GIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYK 302
Query: 357 IDY-------QGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGL 409
+ Y Q ++ P+RR M +++A G+ E E T + L D
Sbjct: 303 VTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETN---LFETEETRKILDDIC 359
Query: 410 ENKDKFVIESSP--SVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTE 467
K +E P + LL+++ +E + PTF+ D+P +SPLAK HR GLTE
Sbjct: 360 VAK---AVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTE 416
Query: 468 RFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHS 527
RFELF+ +E+ NA++EL DP+ QR EEQ + +AA DD +
Sbjct: 417 RFELFVMKKEICNAYTELNDPMRQRQLFEEQAKA----KAAG--------------DDEA 458
Query: 528 YEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILK 577
+ +D++F TALEYG+PP +G G+GIDR+ M LT+S +I++V+ FP +K
Sbjct: 459 --MFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMK 506
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 332 bits (852), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/530 (36%), Positives = 293/530 (55%), Gaps = 37/530 (6%)
Query: 58 DREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSXX 117
D +R + + +L+ G +PY +K+ S + Y HL G+ V+
Sbjct: 4 DPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGR 63
Query: 118 XXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSDQ-FDQLKVFVDIGDILGVSGSMKR 176
GKL F LR + +Q+ S++ F + + GDI+GV G+ +
Sbjct: 64 IHAKRASG-GKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGK 122
Query: 177 TEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKI 236
T+KGELS++ +L+ L LP + GL D + RYRQRY+D+I V F R+KI
Sbjct: 123 TKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKI 182
Query: 237 VSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIG 296
++ IR ++ LGF+E+ETP++ GGA A+PF+TYHN L +LY+RIA EL+ K +++G
Sbjct: 183 ITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG 242
Query: 297 GFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLT 356
G +++YEIGR FRNEG+ HNPEFTT E Y AY+DY +M ITE++V+ + G
Sbjct: 243 GIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYK 302
Query: 357 IDY-------QGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGL 409
+ Y Q ++ P+RR M +++A G+ E E T + L D
Sbjct: 303 VTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETN---LFETEETRKILDDIC 359
Query: 410 ENKDKFVIESSP--SVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTE 467
K +E P + LL+++ +E + PTF+ D+P +SPLAK HR GLTE
Sbjct: 360 VAK---AVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTE 416
Query: 468 RFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHS 527
RFELF+ +E+ NA++EL DP+ QR EEQ + +AA DD +
Sbjct: 417 RFELFVMKKEICNAYTELNDPMRQRQLFEEQAKA----KAAG--------------DDEA 458
Query: 528 YEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILK 577
+ +D++F TALEYG+PP +G G+GIDR+ M LT+S +I++V+ FP +K
Sbjct: 459 --MFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMK 506
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 170/351 (48%), Gaps = 53/351 (15%)
Query: 232 KRAKIVSEIRKTVESLGFVEVETPVL-QGAAGGAEARPFVTYH----NSLGRDLYLRIAT 286
KRA I++EIR+ G +EVETP + Q PF T +S G +L+L +
Sbjct: 21 KRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSP 80
Query: 287 ELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTH 346
E H+KR+L+ G ++++ R FRNE + HNPEFT +E Y + D +MN ++++
Sbjct: 81 EYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 140
Query: 347 CALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALG 406
L ++ YQ + + L + D +L +VA + L +
Sbjct: 141 -VLDCPAAESLSYQ-----------QAFLRYLEIDPLSADKTQLR---EVAAKLDLSNVA 185
Query: 407 DGLENKDKFVIESSPSVGNLLNEVFEIVVEPKL--VQPTFVLDYPIEISPLAKPHRRHAG 464
D E++D LL +F VEP + +PTFV +P + LA+
Sbjct: 186 DTEEDRD-----------TLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTEDHR 234
Query: 465 LTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESD 524
+ ERFE++ G E+AN F ELTD +Q+ R E Q N KRAA + Q
Sbjct: 235 VAERFEVYYKGIELANGFHELTDAREQQQRFE----QDNRKRAA----RGLPQHP----- 281
Query: 525 DHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPI 575
+D + + AL+ GMP SG+ LG+DRLVML + ++ +VIAF +
Sbjct: 282 -------IDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSV 325
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 173/352 (49%), Gaps = 55/352 (15%)
Query: 232 KRAKIVSEIRKTVESLGFVEVETPVL-QGAAGGAEARPFVTYH----NSLGRDLYLRIAT 286
KRA I++EIR+ G +EVETP + Q PF T +S G +LYL +
Sbjct: 19 KRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGINLYLMTSP 78
Query: 287 ELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTH 346
E H+KR+L G ++++ R FRNE + HNPEFT +E Y + D +MN ++++
Sbjct: 79 EYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 138
Query: 347 CALAVNGKLTIDYQGVE-ICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRAL 405
+D Q E + ++ ++R +L + D +L + A + L +
Sbjct: 139 ---------VLDCQPAESLSYQQAFQR----HLEIDPLSADKTQLR---EAAAKLDLSNI 182
Query: 406 GDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKL--VQPTFVLDYPIEISPLAKPHRRHA 463
D E++D LL +F + VEP + +PTF+ +P + LA+
Sbjct: 183 ADTEEDRD-----------TLLQLLFTMGVEPHIGKEKPTFIYHFPASQASLAQISTEDH 231
Query: 464 GLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKES 523
+ ERFE++ G E+AN F ELTD +Q+ R E Q N KRAA + Q+
Sbjct: 232 RVAERFEVYYKGIELANGFHELTDAREQQQRFE----QDNRKRAA----RGLPQQP---- 279
Query: 524 DDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPI 575
+D + + AL G+P SG+ LG+DRLVML + S+ DVIAF +
Sbjct: 280 --------IDQNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIAFTV 323
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 170/351 (48%), Gaps = 53/351 (15%)
Query: 232 KRAKIVSEIRKTVESLGFVEVETPVL-QGAAGGAEARPFVTYH----NSLGRDLYLRIAT 286
KRA I++EIR+ G +EVETP + Q PF T +S G +L+L +
Sbjct: 38 KRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSP 97
Query: 287 ELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTH 346
E H+KR+L+ G ++++ R FRNE + HNPEFT +E Y + D +MN ++++
Sbjct: 98 EYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 157
Query: 347 CALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALG 406
L ++ YQ + + L + D +L +VA + L +
Sbjct: 158 -VLDCPAAESLSYQ-----------QAFLRYLEIDPLSADKTQLR---EVAAKLDLSNVA 202
Query: 407 DGLENKDKFVIESSPSVGNLLNEVFEIVVEPKL--VQPTFVLDYPIEISPLAKPHRRHAG 464
D E++D LL +F VEP + +PTFV +P + LA+
Sbjct: 203 DTEEDRD-----------TLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTEDHR 251
Query: 465 LTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESD 524
+ ERFE++ G E+AN F ELTD +Q+ R E Q N KRAA + Q
Sbjct: 252 VAERFEVYYKGIELANGFHELTDAREQQQRFE----QDNRKRAA----RGLPQHP----- 298
Query: 525 DHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPI 575
+D + + AL+ GMP SG+ LG+DRLVML + ++ +VIAF +
Sbjct: 299 -------IDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSV 342
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 112/465 (24%), Positives = 211/465 (45%), Gaps = 90/465 (19%)
Query: 126 FGKLAFLTLRDDSGTIQLYCEKERL---LSDQFDQLKVFVDIGDILGVSGSMKRTEKGEL 182
G F+ LRD +G Q+ +K +S + Q V + G+ + KR +G +
Sbjct: 31 LGGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVI----QVRGIVKADKRAPRG-I 85
Query: 183 SVLVNSFVILTKSLLPLPDKYHGLT--DVDKRYRQRYVDMISKPEVADVFRKRAKIVSEI 240
+ +L+K+ PLP G D+D R R+R +D+ + E+ V + ++ +
Sbjct: 86 ELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDL-RRQEMQAVIKIQSLALKAF 144
Query: 241 RKTVESLGFVEVETPVLQGAA--GGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGF 298
R+T+ GF+E+ TP + +A GGA+ P + + G++ +L + +L+ K ++ G
Sbjct: 145 RETLYKEGFIEIFTPKIIASATEGGAQLFPVIYF----GKEAFLAQSPQLY-KELMAGVV 199
Query: 299 EKIYEIGRIFRNEGLSTR-HNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVN--GK- 354
E+++E+ +R E T H EF ++++ A++DY +M + E+I+ + + GK
Sbjct: 200 ERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKE 259
Query: 355 ----LTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLE 410
L + V+I ++R E + L + I F G+D+ + LR L + L
Sbjct: 260 ELKILNYEPPEVKIPIKRLKYTEAIEILRSKGYNIKF---GDDIGTPE---LRILNEEL- 312
Query: 411 NKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPL-AKPHRRHAGLTERF 469
+D + F++D+P + P K + L+E F
Sbjct: 313 KEDLY----------------------------FIVDWPSDARPFYTKSKSENPELSESF 344
Query: 470 ELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYE 529
+L E+ + + N KR V E++ ++ LK S+E
Sbjct: 345 DLIYKFLEIVSGST------------------RNHKR--EVLEEALKKKGLK---PESFE 381
Query: 530 VTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
F+ +YGMPP +G G+G+ RL+++LT S+++++ FP
Sbjct: 382 F-----FLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFP 421
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 128/240 (53%), Gaps = 20/240 (8%)
Query: 126 FGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGD--ILGVSGSMK-RTEK--- 179
G L F+ +RD G +Q++ + +R D LK+ ++ + + V+G+++ R EK
Sbjct: 30 LGSLIFIDMRDREGIVQVFFDPDRA-----DALKLASELRNEFCIQVTGTVRARDEKNIN 84
Query: 180 -----GELSVLVNSFVILTKS-LLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKR 233
GE+ VL +S I+ ++ +LPL D H T+ + R + RY+D+ +PE+A + R
Sbjct: 85 RDMATGEIEVLASSLTIINRADVLPL-DSNHVNTE-EARLKYRYLDL-RRPEMAQRLKTR 141
Query: 234 AKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRM 293
AKI S +R+ ++ GF+++ETP+L A V G+ L + +L + +
Sbjct: 142 AKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLL 201
Query: 294 LIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNG 353
++ GF++ Y+I + FR+E L PEFT I++ ++ + + E +V H L V G
Sbjct: 202 MMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKG 261
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
+ AL+YG PP +G+ G+DRL MLLT + +IRDVIAFP
Sbjct: 517 LLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFP 555
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 128/240 (53%), Gaps = 20/240 (8%)
Query: 126 FGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGD--ILGVSGSMK-RTEK--- 179
G L F+ +RD G +Q++ + +R D LK+ ++ + + V+G+++ R EK
Sbjct: 30 LGSLIFIDMRDREGIVQVFFDPDRA-----DALKLASELRNEFCIQVTGTVRARDEKNIN 84
Query: 180 -----GELSVLVNSFVILTKS-LLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKR 233
GE+ VL +S I+ ++ +LPL D H T+ + R + RY+D+ +PE+A + R
Sbjct: 85 RDMATGEIEVLASSLTIINRADVLPL-DSNHVNTE-EARLKYRYLDL-RRPEMAQRLKTR 141
Query: 234 AKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRM 293
AKI S +R+ ++ GF+++ETP+L A V G+ L + +L + +
Sbjct: 142 AKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLL 201
Query: 294 LIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNG 353
++ GF++ Y+I + FR+E L PEFT I++ ++ + + E +V H L V G
Sbjct: 202 MMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKG 261
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
+ AL+YG PP +G+ G+DRL MLLT + +IRDVIAFP
Sbjct: 517 LLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFP 555
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 113/480 (23%), Positives = 201/480 (41%), Gaps = 89/480 (18%)
Query: 129 LAFLTLRDDSGTIQ--LYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLV 186
LAFLTLR + IQ + KE +S + +++ I+ V G +K+ ++ S V
Sbjct: 58 LAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATV 117
Query: 187 NSFVILTKSLLPLPDKYHGL---------------------TDVDKRYRQRYVDMISKPE 225
+ I + + + L ++D R R +D+ +
Sbjct: 118 QNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTN 177
Query: 226 VADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPF-VTYHNSLGRDLYLRI 284
A +FR +A + R+ + + F EV TP L GA + F VTY YL
Sbjct: 178 QA-IFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKA---YLAQ 233
Query: 285 ATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEFTTIEMYEAYSD-YQSMMNITEE 342
+ + + +++++ FE++YEIG +FR E +T RH EFT ++M A+ + Y +++ E
Sbjct: 234 SPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSE 293
Query: 343 IVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKET-- 400
+ V I E P R LV++ ++ +L D K+ + T
Sbjct: 294 LF-----------------VFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYK 336
Query: 401 ----TLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLD-YPIEISPL 455
LRA G + + + E+ +G L+ + ++ ++LD +P+EI P
Sbjct: 337 EGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDF--------YILDKFPLEIRPF 388
Query: 456 -AKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKS 514
P + + ++ F+ G E+ + + D A L+E+++ H S
Sbjct: 389 YTMPDPANPKYSNSYDFFMRGEEILSGAQRIHD----HALLQERMKAHG---------LS 435
Query: 515 SAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
LK D+ YG PP +G G+G++R+VM + +IR FP
Sbjct: 436 PEDPGLK-------------DYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFP 482
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 113/480 (23%), Positives = 201/480 (41%), Gaps = 89/480 (18%)
Query: 129 LAFLTLRDDSGTIQ--LYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLV 186
LAFLTLR + IQ + KE +S + +++ I+ V G +K+ ++ S V
Sbjct: 55 LAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATV 114
Query: 187 NSFVILTKSLLPLPDKYHGL---------------------TDVDKRYRQRYVDMISKPE 225
+ I + + + L ++D R R +D+ +
Sbjct: 115 QNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTN 174
Query: 226 VADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPF-VTYHNSLGRDLYLRI 284
A +FR +A + R+ + + F EV TP L GA + F VTY YL
Sbjct: 175 QA-IFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKA---YLAQ 230
Query: 285 ATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEFTTIEMYEAYSD-YQSMMNITEE 342
+ + + +++++ FE++YEIG +FR E +T RH EFT ++M A+ + Y +++ E
Sbjct: 231 SPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSE 290
Query: 343 IVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKET-- 400
+ V I E P R LV++ ++ +L D K+ + T
Sbjct: 291 LF-----------------VFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYK 333
Query: 401 ----TLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLD-YPIEISPL 455
LRA G + + + E+ +G L+ + ++ ++LD +P+EI P
Sbjct: 334 EGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDF--------YILDKFPLEIRPF 385
Query: 456 -AKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKS 514
P + + ++ F+ G E+ + + D A L+E+++ H S
Sbjct: 386 YTMPDPANPKYSNSYDFFMRGEEILSGAQRIHD----HALLQERMKAHG---------LS 432
Query: 515 SAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
LK D+ YG PP +G G+G++R+VM + +IR FP
Sbjct: 433 PEDPGLK-------------DYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFP 479
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 14/229 (6%)
Query: 127 GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELS--V 184
G + FL +RD G +Q+ K+++ + F +L + D++ V G + T K +L +
Sbjct: 32 GGIKFLWIRDRDGIVQITAPKKKVDPELF-KLIPKLRSEDVVAVEGVVNFTPKAKLGFEI 90
Query: 185 LVNSFVILTKSLLPLPDKYHGLT--DVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRK 242
L V+L ++ PLP G ++D R R++D+ +PEV +F+ R+ + +R
Sbjct: 91 LPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDL-RRPEVMAIFKIRSSVFKAVRD 149
Query: 243 TVESLGFVEVETPVLQGAA--GGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEK 300
GF+E+ TP + A GG E P + D +L + +L+ + M+ G ++
Sbjct: 150 FFHENGFIEIHTPKIIATATEGGTELFPMKYFEE----DAFLAESPQLYKEIMMASGLDR 205
Query: 301 IYEIGRIFR-NEGLSTRHNPEFTTIEMYEAY-SDYQSMMNITEEIVTHC 347
+YEI IFR E +TRH E +I+ A+ D + +M+ E +V H
Sbjct: 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHA 254
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
++ A YGMPP G GLG +RL+ + + +IR+VI FP
Sbjct: 392 YLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFP 430
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 14/229 (6%)
Query: 127 GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELS--V 184
G + FL +RD G +Q+ K+++ + F +L + D++ V G + T K +L +
Sbjct: 32 GGIKFLWIRDRDGIVQITAPKKKVDPELF-KLIPKLRSEDVVAVEGVVNFTPKAKLGFEI 90
Query: 185 LVNSFVILTKSLLPLPDKYHGLT--DVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRK 242
L V+L ++ PLP G ++D R R++D+ +PEV +F+ R+ + +R
Sbjct: 91 LPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDL-RRPEVMAIFKIRSSVFKAVRD 149
Query: 243 TVESLGFVEVETPVLQGAA--GGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEK 300
GF+E+ TP + A GG E P + D +L + +L+ + M+ G ++
Sbjct: 150 FFHENGFIEIHTPKIIATATEGGTELFPMKYFEE----DAFLAQSPQLYKQIMMASGLDR 205
Query: 301 IYEIGRIFR-NEGLSTRHNPEFTTIEMYEAY-SDYQSMMNITEEIVTHC 347
+YEI IFR E +TRH E +I+ A+ D + +M+ E +V H
Sbjct: 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHA 254
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
++ A YGMPP G GLG +RL+ + + +IR+VI FP
Sbjct: 392 YLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFP 430
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 158/376 (42%), Gaps = 71/376 (18%)
Query: 210 DKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPF 269
D R R +D+ + +A +FR ++ R+ + S FVE+ TP L G + + F
Sbjct: 225 DTRLDNRMLDLRTVTNIA-IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIF 283
Query: 270 -VTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEFTTIEM- 326
V Y + R YL + +L+ + ++G F K++E+G +FR E +T RH EF +++
Sbjct: 284 EVKYFD---RKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIE 340
Query: 327 YEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGV------EICLERPWRRETMHNLVK 380
E +Y +++ E++ T + + + + + E + RP+ R T K
Sbjct: 341 MEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRPFLRLTY----K 396
Query: 381 EATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLV 440
EA + LRA G+ + + D F +G L ++ K
Sbjct: 397 EAIEM----------------LRASGETIGDYDDFTTPQEVKLGEL--------IKAKYN 432
Query: 441 QPTFVLD-YPIEISPL-AKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQ 498
++LD +P I P P + +++F+ G+E+ + + DP
Sbjct: 433 TDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDP---------- 482
Query: 499 VRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLV 558
+ KR EK LK D++ + +G P +G G+G++R+
Sbjct: 483 --EFLMKRCI---EKGVDPATLK-------------DYIESFRFGSWPHAGCGIGLERIT 524
Query: 559 MLLTNSASIRDVIAFP 574
ML +IR V FP
Sbjct: 525 MLYLGIPNIRKVTLFP 540
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 181/461 (39%), Gaps = 79/461 (17%)
Query: 127 GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEK--GELSV 184
GK FL +RD +G +Q K + + F++ K ++ V G +K E+ G V
Sbjct: 32 GKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVI-VEGIVKADERAPGGAEV 90
Query: 185 LVNSF-VILTKSLLPLPDKYHGLT-DVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRK 242
V VI S P+P+ + ++ YR + I P+ + + + + ++ R+
Sbjct: 91 HVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLH---IRTPKASAIMKVKETLIMAARE 147
Query: 243 TVESLGFVEVETPVL-QGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKI 301
+ G+ EV P+L GA G + Y + YL + +L+L+ + G EK+
Sbjct: 148 WLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYA---YLSQSAQLYLEAAIFG-LEKV 203
Query: 302 YEIGRIFRNEGLSTR-HNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQ 360
+ + FR E TR H EF +E+ A+ D +M + EE+V++ + T++ +
Sbjct: 204 WSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMV-----QRTLELR 258
Query: 361 GVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESS 420
EI + R T+ N I ++E + L++ G +E D +
Sbjct: 259 KKEIEMFRD-DLTTLKNTEPPFPRISYDEAID--------ILQSKGVNVEWGDDLGADEE 309
Query: 421 PSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMAN 480
+L E F+ +P FV YP I
Sbjct: 310 ----RVLTEEFD--------RPFFVYGYPKHI---------------------------K 330
Query: 481 AFSELTDPLDQRARL-EEQVRQHNEKRAAAVSEKSSAQEKL------KESDDHSYEVTLD 533
AF DP D R L + + S++ +KL + D YE LD
Sbjct: 331 AFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLD 390
Query: 534 DDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
YG P SG GLG++RLV + IR FP
Sbjct: 391 -----LRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFP 426
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 122/299 (40%), Gaps = 33/299 (11%)
Query: 87 RTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQL--- 143
RTH A L+E + GEE E G L FL LRD G +QL
Sbjct: 3 RTHYAGSLRETH----VGEEVVLEG-------WVNRRRDLGGLIFLDLRDREGLVQLVAH 51
Query: 144 -----YCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKS--- 195
Y ER+ + + K V + R G + V +++ +L ++
Sbjct: 52 PASPAYATAERVRPEWVVRAKGLVRL-----RPEPNPRLATGRVEVELSALEVLAEAKTP 106
Query: 196 LLPLPDKYHGLTDVDKRYRQRY---VDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEV 252
P+ + G + + R + + + + R R +++ I ++ GFV+V
Sbjct: 107 PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQV 166
Query: 253 ETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEG 312
ETP L + V Y + G L + +L + +++ G ++ ++I R FR+E
Sbjct: 167 ETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDED 226
Query: 313 LSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHC---ALAVNGKLTIDYQGVEICLER 368
L P+FT +++ ++ + + ++ + E ++ H AL V L E +ER
Sbjct: 227 LRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMER 285
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
F+ ALEYG PP G+ G+DRL+ L+T S SIR+VIAFP
Sbjct: 511 FLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFP 549
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 110/228 (48%), Gaps = 14/228 (6%)
Query: 130 AFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSM---------KRTEKG 180
FL LRD G +Q+ ++ + ++ + ++ VSG++ + G
Sbjct: 40 TFLVLRDFDGLVQVIIPQDESAAS-VKKILCEAPVESVVQVSGTVISRPAGQENPKMPTG 98
Query: 181 ELSVLVNSFVILTKSL-LPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSE 239
E+ + V + +L LP K R + RY+D+ S ++ R R+++V +
Sbjct: 99 EIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRSF-QMQYNLRLRSQMVMK 157
Query: 240 IRKTVESL-GFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGF 298
+R+ + +L GFV++ETP L G A+ F+ G+ L + + + +++GG
Sbjct: 158 MREYLCNLHGFVDIETPTLFKRTPGG-AKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGL 216
Query: 299 EKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTH 346
++ +++ R +R+EG PEFT I++ ++ D + ++ E ++ +
Sbjct: 217 DRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQY 264
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 486 TDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMP 545
T+P R++ + V NE ++ ++ ++ + +V + + AL+YG P
Sbjct: 478 TEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAP 537
Query: 546 PASGMGLGIDRLVMLLTNSASIRDVIAFP 574
P G+ LG+DRL+ L+T S SIRDVIAFP
Sbjct: 538 PHGGIALGLDRLICLVTGSPSIRDVIAFP 566
>pdb|1KRS|A Chain A, Solution Structure Of The Anticodon Binding Domain Of
Escherichia Coli Lysyl-Trna Synthetase And Studies Of
Its Interactions With Trna-Lys
pdb|1KRT|A Chain A, Solution Structure Of The Anticodon Binding Domain Of
Escherichia Coli Lysyl-Trna Synthetase And Studies Of
Its Interactions With Trna-Lys
Length = 120
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 87 RTHSANQLQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCE 146
R H+++QL + N EE + N V+ GK +F+TL+D G IQLY
Sbjct: 13 RDHTSDQLHAEFDGKEN-EELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVA 71
Query: 147 KERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKS 195
++ L +++ D+GDILG G + +T+ GELS+ +LTK+
Sbjct: 72 RDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKA 120
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 24/230 (10%)
Query: 126 FGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEK--GELS 183
G++ FL LRD SG +Q+ +L + L V G + K G L
Sbjct: 28 LGRIQFLLLRDRSGVVQVVTGGLKLPLPE-----------SALRVRGLVVENAKAPGGLE 76
Query: 184 VLVNSFVILTKSLLPLP---DKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEI 240
V +L+ +L P P K + D RYV + + A + + +A +V
Sbjct: 77 VQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPL-KVQAALVRGF 135
Query: 241 RKTVESLGFVEVETP-VLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFE 299
R+ ++ F E+ TP V++ A G V Y + YL + +L+ K++++G FE
Sbjct: 136 RRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFE---KRAYLAQSPQLY-KQIMVGVFE 191
Query: 300 KIYEIGRIFR-NEGLSTRHNPEFTTIEMYEAY-SDYQSMMNITEEIVTHC 347
++YE+ ++R E ++RH E+ ++++ + +D + +M + E ++
Sbjct: 192 RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEM 241
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
++ +YGMPP G +G +RL L ++R AFP
Sbjct: 376 YLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 414
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 97/459 (21%), Positives = 176/459 (38%), Gaps = 72/459 (15%)
Query: 129 LAFLTLRDDSGTIQL------YCEKERL-LSDQFDQLKVFVDIGDILGVSGSMKRTEKGE 181
L F+ LRD SG Q CE E++ L + L++ + G + + +
Sbjct: 49 LIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILN 108
Query: 182 LSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIR 241
L + V + ++ +S + L + + + + ++ + R++ +I V + R++I R
Sbjct: 109 LEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHI-VIRSEHTQQVLQLRSEIQWYFR 167
Query: 242 KTVESLGFVEVETP-VLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEK 300
K F E++ P +++ G + Y N YL +++L+L+ +I K
Sbjct: 168 KYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPA---YLTQSSQLYLES-VIASLGK 223
Query: 301 IYEIGRIFRNEGLST-RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHC---ALAVNGKLT 356
+ + +R E T RH E+ +E + ++ ++N E++V +AV+G
Sbjct: 224 SFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKI 283
Query: 357 IDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFV 416
RP++R T + +K ND G+ NKDK
Sbjct: 284 RKMNPHLKLPTRPFKRMTYADAIKYC---------ND-------------HGILNKDKPF 321
Query: 417 IESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPH-RRHAGLTERFELFICG 475
G ++E E + ++ P F++ +P ++ H LTE +L + G
Sbjct: 322 -----EYGEDISEKPERQMTDEIGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPG 376
Query: 476 REMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDD 535
E+ R E A + + D Y T
Sbjct: 377 ------VGEIVG---------------GSMRIWNYDELMGAYKANGLNPDPYYWYT---- 411
Query: 536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
+YG P G GLG++RLVM L IR V +P
Sbjct: 412 --QQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYP 448
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 542 YGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
YG P G GLG++R + LTN+ IRDV +P
Sbjct: 395 YGTCPHGGYGLGLERFICWLTNTNHIRDVCLYP 427
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 17/225 (7%)
Query: 129 LAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSV---- 184
L F LRD +G +Q+ + L +D L V + + + G++K +G+ +
Sbjct: 30 LMFFILRDGTGFLQVLLMDK--LCQTYDALTVNTEC--TVEIYGAIKEVPEGKEAPNGHE 85
Query: 185 LVNSFVILTKSLLP--LPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRK 242
L+ F + + P + + + VDK R++ +I A + R RA +R+
Sbjct: 86 LIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHL-VIRGENAAALLRLRAAATRAMRE 144
Query: 243 TVESLGFVEVETPVL-QGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKI 301
+ G+VEV P L Q G + Y G +L +++L+L+ I +
Sbjct: 145 HFYNAGYVEVAPPTLVQTQVEGGSTLFNLDY---FGEQSFLTQSSQLYLE-TCIPTLGDV 200
Query: 302 YEIGRIFRNEGLST-RHNPEFTTIEMYEAYSDYQSMMNITEEIVT 345
+ I + +R E T RH E+ +E + +M EE+V
Sbjct: 201 FCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVC 245
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 542 YGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
YG P G GLG++R + LTN+ IRDV +P
Sbjct: 397 YGTCPHGGYGLGLERFICWLTNTNHIRDVCLYP 429
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 17/225 (7%)
Query: 129 LAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSV---- 184
L F LRD +G +Q+ + L +D L V + + + G++K +G+ +
Sbjct: 32 LMFFILRDGTGFLQVLLMDK--LCQTYDALTVNTEC--TVEIYGAIKEVPEGKEAPNGHE 87
Query: 185 LVNSFVILTKSLLP--LPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRK 242
L+ F + + P + + + VDK R++ +I A + R RA +R+
Sbjct: 88 LIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHL-VIRGENAAALLRLRAAATRAMRE 146
Query: 243 TVESLGFVEVETPVL-QGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKI 301
+ G+VEV P L Q G + Y G +L +++L+L+ I +
Sbjct: 147 HFYNAGYVEVAPPTLVQTQVEGGSTLFNLDY---FGEQSFLTQSSQLYLE-TCIPTLGDV 202
Query: 302 YEIGRIFRNEGLST-RHNPEFTTIEMYEAYSDYQSMMNITEEIVT 345
+ I + +R E T RH E+ +E + +M EE+V
Sbjct: 203 FCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVC 247
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 385 IDF---NELGNDLKVAKET-TLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVV--EPK 438
+DF + GN ++ +++ L+ L D ++ KD ++E GN LN+V EI+ EPK
Sbjct: 61 VDFMTASSYGNSMQSSRDVRILKDLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPK 120
Query: 439 LVQPTFVLDYP 449
++ +LD P
Sbjct: 121 SIRICTLLDKP 131
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 195 SLLPLPDKYHGLTDVDKRYRQRYVDMISK---PEVADVFRKRA-KIVSEIRKTVESLGFV 250
SLLP+ D +GL++ ++ RQ + + P+ ++ R K + E K + +LG +
Sbjct: 2 SLLPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVL 61
Query: 251 EVETPVLQGAAG 262
+ PV G +G
Sbjct: 62 GITAPVQYGGSG 73
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 276 LGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQS 335
L R LR T H +L G + +G ++R + + ++H P F +E +S ++
Sbjct: 110 LNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHEL 169
Query: 336 MMNITE 341
I +
Sbjct: 170 FAGIKD 175
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 533 DDDFVTALEYG----MPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
+D F LE + P++G G+G++RLV + + I +V FP
Sbjct: 240 EDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFP 285
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 533 DDDFVTALEYG----MPPASGMGLGIDRLVMLLTNSASIRDVIAFP 574
+D F LE + P++G G+G++RLV + + I +V FP
Sbjct: 240 EDSFRPYLEIARAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFP 285
>pdb|1R0D|A Chain A, Hip1r Thatch Domain Core
pdb|1R0D|B Chain B, Hip1r Thatch Domain Core
pdb|1R0D|D Chain D, Hip1r Thatch Domain Core
pdb|1R0D|E Chain E, Hip1r Thatch Domain Core
pdb|1R0D|F Chain F, Hip1r Thatch Domain Core
pdb|1R0D|G Chain G, Hip1r Thatch Domain Core
pdb|1R0D|H Chain H, Hip1r Thatch Domain Core
pdb|1R0D|I Chain I, Hip1r Thatch Domain Core
Length = 206
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 462 HAGLTERFELFICGREMANAFSELTDPLDQRA--------RLEEQVRQHNEKRAAAVSEK 513
H G E EL +C E+A + ++L +A RL+E R NE+ A V+
Sbjct: 131 HTGKYE--ELIVCSHEIAASTAQLVAASKVKANKHSPHLSRLQECSRTVNERAANVVAST 188
Query: 514 SSAQEKLKESDDHSY 528
S QE++++ D +
Sbjct: 189 KSGQEQIEDRDTXDF 203
>pdb|2ODR|D Chain D, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 685
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 537 VTALEYGMP-PASGMGLGIDRLVMLLTNSASIRDVI 571
V +YG+ P +GLG++RL M+ N A +R+++
Sbjct: 323 VALSKYGIDVPVMNLGLGVERLAMISGNFADVREMV 358
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 204 HGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGG 263
H L KR+ ++ + +P + ++ K AK + + GFV+V TP + +
Sbjct: 51 HQLMSQGKRHLEQLRTVKHRPALLELEEKLAKALHQ-------QGFVQVVTPTIITKSAL 103
Query: 264 A-----EARPFVTYHNSLGRDLYLR--IATELH-LKRMLIGGFEK---IYEIGRIFRNEG 312
A E P + L LR +A L+ L R L ++K I+EIG +R E
Sbjct: 104 AKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKES 163
Query: 313 LSTRHNPEFTTIEMYE 328
+H EFT + + E
Sbjct: 164 QGAQHLNEFTMLNLTE 179
>pdb|2ODR|B Chain B, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 648
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 537 VTALEYGMP-PASGMGLGIDRLVMLLTNSASIRDVI 571
V +YG+ P +GLG++RL M+ N A +R+++
Sbjct: 323 VALSKYGIDVPVMNLGLGVERLAMISGNFADVREMV 358
>pdb|2ODR|A Chain A, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 665
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 537 VTALEYGMP-PASGMGLGIDRLVMLLTNSASIRDVI 571
V +YG+ P +GLG++RL M+ N A +R+++
Sbjct: 323 VALSKYGIDVPVMNLGLGVERLAMISGNFADVREMV 358
>pdb|2ODR|C Chain C, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 701
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 537 VTALEYGMP-PASGMGLGIDRLVMLLTNSASIRDVI 571
V +YG+ P +GLG++RL M+ N A +R+++
Sbjct: 323 VALSKYGIDVPVMNLGLGVERLAMISGNFADVREMV 358
>pdb|2PRY|A Chain A, Apo Form Of S. Cerevisiae Orotate
Phosphoribosyltransferase
pdb|2PRZ|A Chain A, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|B Chain B, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|C Chain C, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|D Chain D, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PS1|A Chain A, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Orotic Acid And Prpp
pdb|2PS1|B Chain B, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Orotic Acid And Prpp
Length = 226
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 405 LGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPK 438
+G LENK +I+ + G +NE FEI+ K
Sbjct: 119 VGSALENKRILIIDDVMTAGTAINEAFEIISNAK 152
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 204 HGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGG 263
H L KR+ ++ + +P + ++ K AK + + GFV+V TP + +
Sbjct: 71 HQLMSQGKRHLEQLRTVKHRPALLELEEKLAKALHQ-------QGFVQVVTPTIITKSAL 123
Query: 264 A-----EARPFVTYHNSLGRDLYLR--IATELH-LKRMLIGGFEK---IYEIGRIFRNEG 312
A E P + L LR +A L+ L R L ++K I+EIG +R E
Sbjct: 124 AKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKES 183
Query: 313 LSTRHNPEFTTIEMYE 328
+H EFT + + E
Sbjct: 184 QGAQHLNEFTMLNLTE 199
>pdb|3SKQ|A Chain A, Mdm38 Is A 14-3-3-Like Receptor And Associates With The
Protein Synthesis Machinery At The Inner Mitochondrial
Membrane
Length = 249
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 299 EKIYEIGRIFRNEG-LSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTI 357
++I I ++F+N+ L P+ + + + + + + +I + +N TI
Sbjct: 80 DEISAIAQMFKNDSVLDNLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTI 139
Query: 358 DYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLR 403
DY+GVE + + + +K A G+ +L ++LKV E LR
Sbjct: 140 DYEGVESLSQEELYQACVSRGMK-AYGVSKEDLVDNLKVWLELRLR 184
>pdb|3E0E|A Chain A, Crystal Structure Of A Domain Of Replication Protein A
From Methanococcus Maripaludis. Northeast Structural
Genomics Targe Mrr110b
Length = 97
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 127 GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVF-VDIGDILGVSGSMKRTEKGELSVL 185
G+L L L+DD+G+I+ +++L F V GDI VSG +K+ G L +
Sbjct: 37 GQLKSLFLKDDTGSIR---------GTLWNELADFEVKKGDIAEVSGYVKQGYSG-LEIS 86
Query: 186 VNSFVILTKSL 196
V++ I+ KSL
Sbjct: 87 VDNIGIIEKSL 97
>pdb|2K5V|A Chain A, Solution Nmr Structure Of The Second Ob-Fold Domain Of
Replication Protein A From Methanococcus Maripaludis.
Northeast Structural Genomics Target Mrr110b
Length = 104
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 127 GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVF-VDIGDILGVSGSMKRTEKGELSVL 185
G+L L L+DD+G+I+ +++L F V GDI VSG +K+ G L +
Sbjct: 37 GQLKSLFLKDDTGSIR---------GTLWNELADFEVKKGDIAEVSGYVKQGYSG-LEIS 86
Query: 186 VNSFVILTKSL 196
V++ I+ KSL
Sbjct: 87 VDNIGIIEKSL 97
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin
Subcomponent (Ntnha) From Clostridium Botulinum Serotype
D Strain 4947
Length = 1196
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 319 PEFTTIEMYEAYSD---YQSMMNITEEIVTHCALAVN 352
PE I Y+ SD + + + TEE++TH AL VN
Sbjct: 466 PEIIDINPYKDNSDDLLFTQITSTTEEVITHTALPVN 502
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 221 ISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDL 280
I+ PEV + E ++ ++S+ F+ E PV+ G + V N LG D
Sbjct: 255 IATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVND-VKLKNFLGAD- 312
Query: 281 YLRIATELHLKRMLIGGFEKI 301
+L ATE +R+L GF I
Sbjct: 313 FLDEATEEDARRVLGAGFGSI 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,424,636
Number of Sequences: 62578
Number of extensions: 615100
Number of successful extensions: 1562
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 66
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)