Query 008040
Match_columns 580
No_of_seqs 309 out of 2180
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:41:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ex5_A Lysine--tRNA ligase; st 100.0 8E-133 3E-137 1094.0 49.6 490 57-579 34-528 (529)
2 3bju_A Lysyl-tRNA synthetase; 100.0 4E-129 1E-133 1069.2 57.2 492 57-579 3-508 (521)
3 1e1o_A Lysyl-tRNA synthetase, 100.0 1E-129 5E-134 1068.1 51.6 490 57-579 12-503 (504)
4 3a74_A Lysyl-tRNA synthetase; 100.0 2E-128 5E-133 1058.4 52.9 490 57-579 3-493 (493)
5 1l0w_A Aspartyl-tRNA synthetas 100.0 5E-106 2E-110 895.0 42.2 437 87-579 3-554 (580)
6 1c0a_A Aspartyl tRNA synthetas 100.0 3E-105 1E-109 891.1 40.5 438 87-579 2-560 (585)
7 3nem_A Aspartyl-tRNA synthetas 100.0 2E-104 6E-109 857.3 42.1 420 86-579 2-435 (438)
8 3m4p_A Ehasnrs, asparaginyl-tR 100.0 4E-102 1E-106 842.7 30.8 405 109-578 28-452 (456)
9 3i7f_A Aspartyl-tRNA synthetas 100.0 1E-100 4E-105 840.3 38.6 405 111-578 62-544 (548)
10 2xgt_A Asparaginyl-tRNA synthe 100.0 1E-100 4E-105 829.2 34.2 404 110-579 10-432 (435)
11 1wyd_A Hypothetical aspartyl-t 100.0 9E-100 3E-104 819.6 39.4 413 87-579 3-426 (429)
12 1eov_A ASPRS, aspartyl-tRNA sy 100.0 6.1E-99 2E-103 824.9 42.7 408 111-578 36-483 (487)
13 1x54_A Asparaginyl-tRNA synthe 100.0 2.1E-99 7E-104 818.4 34.6 415 87-579 3-431 (434)
14 1n9w_A Aspartyl-tRNA synthetas 100.0 2.3E-98 8E-103 807.1 36.1 395 111-579 13-419 (422)
15 4ah6_A Aspartate--tRNA ligase, 100.0 4.2E-94 1.5E-98 798.0 37.9 437 83-577 7-569 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 2.2E-83 7.4E-88 673.7 31.6 306 226-577 32-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 2E-67 6.7E-72 543.0 24.0 275 214-579 1-290 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 6.7E-23 2.3E-27 210.7 6.1 165 177-345 22-204 (290)
19 12as_A Asparagine synthetase; 99.8 2.5E-19 8.6E-24 181.3 22.3 272 229-572 4-315 (330)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.7 1.5E-17 5.2E-22 170.5 15.7 99 233-331 73-182 (288)
21 1b7y_A Phers, protein (phenyla 99.6 1.3E-14 4.4E-19 152.1 18.5 114 233-347 103-244 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.3 2.3E-12 7.8E-17 132.4 9.4 115 233-347 55-183 (294)
23 3pco_A Phenylalanyl-tRNA synth 99.2 1.5E-10 5E-15 120.1 16.3 113 234-347 110-234 (327)
24 3l4g_A Phenylalanyl-tRNA synth 99.1 9.2E-10 3.2E-14 119.9 14.3 112 233-344 227-395 (508)
25 3cmq_A Phenylalanyl-tRNA synth 98.5 9.9E-07 3.4E-11 94.5 15.9 96 234-330 51-164 (415)
26 1evl_A Threonyl-tRNA synthetas 98.5 2.4E-07 8.3E-12 98.8 9.5 116 228-346 28-162 (401)
27 2i4l_A Proline-tRNA ligase; al 98.5 4.5E-07 1.5E-11 98.5 11.0 115 228-343 65-197 (458)
28 2du3_A O-phosphoseryl-tRNA syn 98.4 1.6E-06 5.6E-11 94.9 13.6 45 300-344 207-254 (534)
29 1z7m_A ATP phosphoribosyltrans 98.4 2.4E-06 8.4E-11 89.4 14.0 104 228-332 34-151 (344)
30 1hc7_A Prolyl-tRNA synthetase; 98.3 4.8E-06 1.6E-10 90.9 13.0 115 229-343 43-178 (477)
31 2j3l_A Prolyl-tRNA synthetase; 98.3 5.9E-06 2E-10 92.1 13.9 115 228-343 45-177 (572)
32 1qe0_A Histidyl-tRNA synthetas 98.2 2E-06 6.9E-11 92.0 9.1 104 228-332 14-135 (420)
33 1nyr_A Threonyl-tRNA synthetas 98.2 4.6E-06 1.6E-10 94.4 12.0 116 228-345 269-404 (645)
34 2dq3_A Seryl-tRNA synthetase; 98.2 2.4E-06 8.3E-11 91.8 9.2 119 228-348 170-307 (425)
35 1wu7_A Histidyl-tRNA synthetas 98.2 7.4E-06 2.5E-10 88.1 12.9 104 228-332 18-133 (434)
36 1nj8_A Proline-tRNA synthetase 98.2 8.8E-06 3E-10 88.4 13.1 118 228-345 36-176 (459)
37 3od1_A ATP phosphoribosyltrans 98.2 8.8E-06 3E-10 86.8 12.6 104 228-332 22-137 (400)
38 3uh0_A Threonyl-tRNA synthetas 98.2 5.7E-06 1.9E-10 89.9 11.2 121 228-349 62-203 (460)
39 4e51_A Histidine--tRNA ligase; 98.2 6.5E-06 2.2E-10 89.6 11.3 104 228-332 44-164 (467)
40 1nj1_A PROR, proline-tRNA synt 98.2 7.1E-06 2.4E-10 90.1 11.6 117 229-346 70-209 (501)
41 1qf6_A THRRS, threonyl-tRNA sy 98.2 3.4E-06 1.2E-10 95.3 9.2 116 228-346 269-403 (642)
42 3rac_A Histidine-tRNA ligase; 98.2 9E-06 3.1E-10 86.0 11.9 102 230-332 37-157 (373)
43 1h4v_B Histidyl-tRNA synthetas 98.1 1.2E-05 4E-10 86.1 11.7 103 229-332 16-135 (421)
44 1htt_A Histidyl-tRNA synthetas 98.1 1.2E-05 4.3E-10 86.0 11.6 104 228-332 16-135 (423)
45 1ses_A Seryl-tRNA synthetase; 98.1 1.2E-05 4.2E-10 86.2 11.1 119 228-347 164-302 (421)
46 3ial_A Prolyl-tRNA synthetase; 98.1 7.8E-06 2.7E-10 89.8 9.6 121 228-348 53-195 (518)
47 2dq0_A Seryl-tRNA synthetase; 98.1 6.3E-06 2.2E-10 89.3 8.7 118 228-347 191-327 (455)
48 4hvc_A Bifunctional glutamate/ 98.1 1.8E-05 6E-10 87.1 12.2 119 228-347 59-200 (519)
49 3a32_A Probable threonyl-tRNA 98.1 8.7E-06 3E-10 88.7 9.5 100 229-330 48-169 (471)
50 3lc0_A Histidyl-tRNA synthetas 98.0 1.8E-05 6.2E-10 85.8 11.7 103 229-332 42-157 (456)
51 3net_A Histidyl-tRNA synthetas 98.0 1.3E-05 4.4E-10 87.2 10.4 104 228-332 24-154 (465)
52 4g84_A Histidine--tRNA ligase, 98.0 4.9E-05 1.7E-09 82.2 13.0 102 228-330 26-138 (464)
53 3lss_A Seryl-tRNA synthetase; 97.9 1.1E-05 3.8E-10 87.6 7.7 117 228-347 206-346 (484)
54 4g85_A Histidine-tRNA ligase, 97.9 4.2E-05 1.4E-09 84.2 11.9 103 228-331 79-192 (517)
55 1wle_A Seryl-tRNA synthetase; 97.9 6.2E-05 2.1E-09 82.3 12.5 120 228-348 217-359 (501)
56 2cja_A Seryl-tRNA synthetase; 97.9 1.1E-05 3.9E-10 88.5 6.4 122 228-351 229-400 (522)
57 3vbb_A Seryl-tRNA synthetase, 97.9 3E-05 1E-09 84.7 9.4 119 228-347 199-348 (522)
58 3qne_A Seryl-tRNA synthetase, 97.9 3E-05 1E-09 84.2 9.1 117 228-347 183-323 (485)
59 3err_A Fusion protein of micro 97.8 4E-05 1.4E-09 84.5 9.7 115 228-347 273-411 (536)
60 1ati_A Glycyl-tRNA synthetase; 97.8 2.6E-05 8.8E-10 85.7 8.0 47 300-347 211-260 (505)
61 1usy_A ATP phosphoribosyltrans 97.4 0.00034 1.2E-08 70.7 9.0 89 237-332 7-101 (275)
62 2du7_A O-phosphoseryl-tRNA syn 97.4 0.00029 9.9E-09 77.2 8.4 48 300-347 219-269 (549)
63 2odr_B Phosphoseryl-tRNA synth 97.4 0.0002 6.9E-09 79.2 7.0 49 299-347 225-276 (648)
64 2odr_A Phosphoseryl-tRNA synth 97.4 0.00021 7.2E-09 79.1 7.0 49 299-347 225-276 (665)
65 2odr_D Phosphoseryl-tRNA synth 97.4 0.00022 7.4E-09 79.2 7.0 49 299-347 225-276 (685)
66 2odr_C Phosphoseryl-tRNA synth 97.3 0.00023 8E-09 79.1 7.0 49 299-347 225-276 (701)
67 2zt5_A Glycyl-tRNA synthetase; 97.1 0.00041 1.4E-08 78.8 6.7 32 229-260 100-132 (693)
68 1g5h_A Mitochondrial DNA polym 97.1 0.00031 1E-08 76.1 4.8 120 229-349 61-219 (454)
69 3ikl_A DNA polymerase subunit 97.0 0.00093 3.2E-08 72.1 7.7 108 229-347 103-227 (459)
70 3mf2_A BLL0957 protein; aminoa 97.0 0.0018 6.1E-08 67.1 8.6 120 228-349 62-219 (346)
71 3kf6_A Protein STN1; OB fold, 96.9 0.0084 2.9E-07 55.6 12.1 79 112-193 48-127 (159)
72 4gop_B Putative uncharacterize 96.6 0.017 5.8E-07 51.9 11.7 79 112-193 37-115 (136)
73 3kdf_D Replication protein A 3 96.6 0.021 7.2E-07 51.1 11.8 78 112-193 32-110 (132)
74 2k50_A Replication factor A re 96.5 0.011 3.8E-07 51.4 9.1 79 111-195 16-105 (115)
75 3dm3_A Replication factor A; p 96.4 0.037 1.3E-06 47.6 11.6 77 112-196 15-101 (105)
76 3e0e_A Replication protein A; 96.1 0.06 2E-06 45.5 11.5 77 111-196 11-97 (97)
77 2rhq_B Phenylalanyl-tRNA synth 96.0 0.034 1.2E-06 64.1 12.4 113 233-347 495-632 (795)
78 3l4g_B Phenylalanyl-tRNA synth 95.5 0.049 1.7E-06 60.7 10.6 112 234-346 394-521 (589)
79 3ica_A Phenylalanyl-tRNA synth 95.4 0.056 1.9E-06 52.2 9.6 114 234-347 7-151 (213)
80 3ig2_A Phenylalanyl-tRNA synth 95.4 0.042 1.4E-06 53.1 8.7 114 234-347 7-151 (213)
81 1nnx_A Protein YGIW; structura 95.1 0.15 5.3E-06 44.1 10.4 72 112-194 38-109 (109)
82 2pi2_A Replication protein A 3 95.1 0.15 5.1E-06 51.1 11.7 78 112-193 72-150 (270)
83 3au7_A TIAS, putative uncharac 94.8 0.2 6.7E-06 53.0 12.2 77 111-195 284-362 (402)
84 1ynx_A Replication factor-A pr 94.2 0.11 3.8E-06 45.1 7.3 78 113-195 16-109 (114)
85 2hpi_A DNA polymerase III alph 94.0 0.054 1.9E-06 64.7 6.4 78 111-195 1042-1124(1220)
86 2k75_A Uncharacterized protein 93.6 0.59 2E-05 40.0 10.7 77 112-200 14-98 (106)
87 3kf8_A Protein STN1; OB fold; 93.6 0.52 1.8E-05 45.6 11.3 79 112-195 86-185 (220)
88 1jmc_A Protein (replication pr 93.0 0.32 1.1E-05 47.5 9.3 79 112-195 19-113 (246)
89 1b7y_B Phers, protein (phenyla 92.0 0.72 2.5E-05 53.0 11.6 106 233-347 491-620 (785)
90 1o7i_A SSB, SSO2364, single st 91.5 1.2 4.2E-05 38.6 10.1 73 112-194 13-95 (119)
91 2kbn_A Conserved protein; nucl 90.4 2.1 7.1E-05 36.7 10.3 77 111-195 15-94 (109)
92 3kdf_A Replication protein A 1 88.5 2.4 8.3E-05 37.2 9.4 70 110-195 21-90 (121)
93 4gop_C Putative uncharacterize 87.1 1.4 4.6E-05 47.2 8.4 79 112-195 14-108 (444)
94 2rhq_A Phenylalanyl-tRNA synth 84.0 0.44 1.5E-05 48.2 2.5 29 542-570 243-275 (294)
95 2vw9_A Single-stranded DNA bin 82.0 8.9 0.0003 33.9 10.0 77 113-194 4-107 (134)
96 3tqy_A Single-stranded DNA-bin 79.6 14 0.00047 33.7 10.7 79 112-195 9-115 (158)
97 3vdy_A SSB, single-stranded DN 79.0 13 0.00043 31.9 9.7 79 112-195 6-109 (116)
98 1luz_A Protein K3, protein K2; 77.4 11 0.00039 30.7 8.5 69 115-188 14-83 (88)
99 3qtc_A Pyrrolysyl-tRNA synthet 77.1 1.2 4.2E-05 44.7 3.0 29 542-570 247-276 (290)
100 2pi2_E Replication protein A 1 76.0 16 0.00055 32.8 9.7 69 110-194 42-110 (142)
101 1txy_A Primosomal replication 74.1 30 0.001 29.0 10.6 77 113-194 4-102 (104)
102 3fhw_A Primosomal replication 72.5 12 0.00041 32.4 7.7 51 141-197 49-101 (115)
103 3f2b_A DNA-directed DNA polyme 71.9 30 0.001 40.8 13.2 81 112-195 18-104 (1041)
104 1z9f_A Single-strand binding p 71.6 28 0.00096 31.5 10.4 79 112-195 17-122 (153)
105 2k4k_A GSP13, general stress p 71.4 13 0.00044 32.6 7.9 67 115-186 10-76 (130)
106 1kl9_A Eukaryotic translation 71.0 13 0.00045 34.7 8.2 54 115-171 18-71 (182)
107 1wjj_A Hypothetical protein F2 70.8 15 0.00051 33.1 8.2 74 112-194 27-119 (145)
108 3mxn_B RECQ-mediated genome in 70.4 40 0.0014 30.3 10.7 72 112-194 59-130 (150)
109 2a19_A EIF-2- alpha, eukaryoti 70.0 13 0.00043 34.6 7.9 54 115-171 18-71 (175)
110 3pco_B Phenylalanyl-tRNA synth 67.4 11 0.00036 43.5 8.1 110 236-347 494-628 (795)
111 2k52_A Uncharacterized protein 66.8 22 0.00075 28.1 7.7 63 115-186 8-70 (80)
112 4gop_A Putative uncharacterize 65.0 20 0.00069 30.8 7.6 64 110-188 17-83 (114)
113 1j6q_A Cytochrome C maturation 62.5 51 0.0017 29.3 9.9 71 110-196 31-107 (136)
114 2du7_A O-phosphoseryl-tRNA syn 61.9 4.3 0.00015 44.5 3.3 27 234-260 60-86 (549)
115 2fxq_A Single-strand binding p 61.1 41 0.0014 33.0 10.1 77 112-194 129-229 (264)
116 1qvc_A Single stranded DNA bin 60.9 45 0.0015 29.7 9.4 78 112-194 6-114 (145)
117 1sr3_A APO-CCME; OB fold, beta 60.3 41 0.0014 29.9 8.8 72 110-197 27-103 (136)
118 1se8_A Single-strand binding p 60.2 48 0.0017 33.3 10.6 76 113-194 131-233 (301)
119 1gm5_A RECG; helicase, replica 57.6 5.2 0.00018 45.9 3.1 75 111-192 165-246 (780)
120 3lc0_A Histidyl-tRNA synthetas 55.4 3.3 0.00011 44.4 1.0 19 545-563 333-351 (456)
121 2khj_A 30S ribosomal protein S 54.5 16 0.00055 30.8 5.1 52 115-171 34-85 (109)
122 2odr_A Phosphoseryl-tRNA synth 53.4 6.8 0.00023 43.6 3.0 27 234-260 68-94 (665)
123 2eqs_A ATP-dependent RNA helic 51.9 13 0.00046 31.0 4.1 55 115-171 15-70 (103)
124 3ull_A DNA binding protein; DN 50.2 22 0.00074 31.2 5.3 37 159-195 83-127 (132)
125 1v1q_A Primosomal replication 50.1 45 0.0015 29.5 7.4 78 112-194 20-119 (134)
126 3net_A Histidyl-tRNA synthetas 49.9 5.6 0.00019 42.7 1.7 19 545-563 342-360 (465)
127 4dka_C RNA-editing complex pro 49.7 92 0.0031 26.3 8.7 66 111-178 3-77 (105)
128 2odr_B Phosphoseryl-tRNA synth 49.1 9.2 0.00031 42.5 3.2 27 234-260 68-94 (648)
129 4gs3_A Single-stranded DNA-bin 48.9 1.2E+02 0.0042 25.6 10.5 75 112-193 12-106 (107)
130 2odr_D Phosphoseryl-tRNA synth 48.4 9.5 0.00033 42.6 3.2 27 234-260 68-94 (685)
131 2cqo_A Nucleolar protein of 40 48.2 6.4 0.00022 34.1 1.5 53 115-171 25-77 (119)
132 2odr_C Phosphoseryl-tRNA synth 47.5 10 0.00034 42.5 3.2 27 234-260 68-94 (701)
133 2khi_A 30S ribosomal protein S 45.3 45 0.0016 28.2 6.5 65 115-184 33-98 (115)
134 1z7m_A ATP phosphoribosyltrans 43.2 8.9 0.0003 39.4 1.9 18 545-562 318-335 (344)
135 3eiv_A Single-stranded DNA-bin 43.0 2.1E+02 0.0073 26.8 11.3 75 112-191 5-108 (199)
136 3m7n_A Putative uncharacterize 42.0 27 0.00091 32.4 4.8 55 115-171 60-121 (179)
137 4g84_A Histidine--tRNA ligase, 41.9 8.8 0.0003 40.7 1.7 18 545-562 335-352 (464)
138 1j5w_A Glycyl-tRNA synthetase 40.9 14 0.00046 36.6 2.6 29 544-572 163-191 (298)
139 3ulp_A Single-strand binding p 40.7 54 0.0018 28.2 6.4 78 112-194 7-119 (124)
140 3aev_A Translation initiation 40.4 50 0.0017 32.8 6.8 67 115-184 14-80 (275)
141 1xjv_A Protection of telomeres 40.2 1.5E+02 0.005 29.4 10.4 71 111-186 15-92 (294)
142 3rf1_A Glycyl-tRNA synthetase 40.1 15 0.00051 36.5 2.7 29 544-572 175-203 (311)
143 3rac_A Histidine-tRNA ligase; 39.9 11 0.00037 39.3 1.9 18 545-562 347-364 (373)
144 2b29_A Replication protein A 7 39.4 1.6E+02 0.0053 25.5 9.1 62 129-194 44-107 (123)
145 3od1_A ATP phosphoribosyltrans 39.0 11 0.00036 39.7 1.7 22 544-565 310-331 (400)
146 2kct_A Cytochrome C-type bioge 38.7 1.7E+02 0.0057 24.2 9.7 72 110-196 7-86 (94)
147 2i4l_A Proline-tRNA ligase; al 38.7 9.5 0.00033 40.7 1.3 20 544-563 329-349 (458)
148 2vl6_A SSO MCM N-TER, minichro 36.5 71 0.0024 31.2 7.2 34 161-194 224-267 (268)
149 1wu7_A Histidyl-tRNA synthetas 34.3 14 0.00047 39.0 1.7 19 546-564 306-324 (434)
150 2ztg_A Alanyl-tRNA synthetase; 33.6 9 0.00031 43.5 0.1 77 234-326 63-150 (739)
151 2j3l_A Prolyl-tRNA synthetase; 33.4 12 0.00043 40.9 1.2 19 545-563 435-454 (572)
152 1htt_A Histidyl-tRNA synthetas 33.1 15 0.0005 38.5 1.7 18 546-563 300-317 (423)
153 1h4v_B Histidyl-tRNA synthetas 32.9 15 0.00052 38.4 1.7 19 546-564 301-319 (421)
154 1q8k_A Eukaryotic translation 32.1 53 0.0018 33.2 5.5 54 115-171 16-69 (308)
155 1se8_A Single-strand binding p 31.2 76 0.0026 31.8 6.5 79 112-195 6-112 (301)
156 3k8a_A Putative primosomal rep 30.8 77 0.0026 26.6 5.5 75 112-193 8-102 (103)
157 4g85_A Histidine-tRNA ligase, 30.4 17 0.00059 39.2 1.7 18 545-562 388-405 (517)
158 1eqq_A Single stranded DNA bin 30.2 30 0.001 32.0 3.1 78 112-194 7-115 (178)
159 1yfs_A Alanyl-tRNA synthetase; 29.1 22 0.00077 37.9 2.2 89 235-345 7-116 (465)
160 1wi5_A RRP5 protein homolog; S 28.5 97 0.0033 26.2 5.9 69 115-187 24-93 (119)
161 2fxq_A Single-strand binding p 27.6 1.2E+02 0.0043 29.4 7.3 79 112-195 6-110 (264)
162 2zze_A Alanyl-tRNA synthetase; 25.2 19 0.00065 40.9 0.9 28 546-574 245-272 (752)
163 4e51_A Histidine--tRNA ligase; 25.0 35 0.0012 36.4 2.9 29 536-564 318-346 (467)
164 1qe0_A Histidyl-tRNA synthetas 24.7 22 0.00075 37.0 1.2 17 546-562 302-318 (420)
165 3koj_A Uncharacterized protein 24.6 2.2E+02 0.0077 23.9 7.3 74 112-190 12-107 (108)
166 3hy0_A Alanyl-tRNA synthetase; 23.8 27 0.00092 37.0 1.6 89 234-344 5-114 (441)
167 3pgz_A Single-stranded DNA-bin 23.6 1E+02 0.0036 28.9 5.5 80 112-195 27-138 (193)
168 2c35_B Human RPB7, DNA-directe 22.9 58 0.002 29.6 3.6 30 115-150 84-113 (172)
169 1go3_E DNA-directed RNA polyme 21.7 51 0.0017 30.3 3.0 51 115-171 84-145 (187)
170 3cw2_C Translation initiation 21.4 40 0.0014 33.3 2.2 54 115-171 14-67 (266)
171 3afp_A Single-stranded DNA-bin 21.1 1.7E+02 0.0059 26.5 6.4 73 112-189 5-106 (168)
172 1nj8_A Proline-tRNA synthetase 20.5 20 0.00068 38.3 -0.2 19 544-563 248-266 (459)
173 3psi_A Transcription elongatio 20.3 2.2E+02 0.0074 34.2 8.5 69 114-187 904-973 (1219)
No 1
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=7.6e-133 Score=1093.98 Aligned_cols=490 Identities=46% Similarity=0.786 Sum_probs=450.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCCCccCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEee
Q 008040 57 SDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRD 136 (580)
Q Consensus 57 ~~~~e~~~~R~~kl~~L~~~g~~pyp~~~~~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD 136 (580)
.+++++.+.|++|+++|++.|+ |||++|.+||+|++++++|.++..++.. ..|++|+|+|||+++|.+||++|++|||
T Consensus 34 ~~~~~~~~~r~~k~~~l~~~g~-~yp~~~~~t~~~~~~~~~~~~~~~~~~~-~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD 111 (529)
T 4ex5_A 34 ADENQIVAERRDKLRALRDQGI-AYPNDFQPTHHAADLQTAYADADKEALE-AKSLEVAIAGRMMLKRVMGKASFATVQD 111 (529)
T ss_dssp --CHHHHHHHHHHHHHHHHTSC-SSCCCCCCCCCHHHHHHHTTTCCHHHHH-HHCCEEEEEEEEEEEEEETTEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHcCC-CCCCCCcCceEHHHHHHHhhccCccccc-cCCcEEEEEEEEEeeecCCCeEEEEEEe
Confidence 5789999999999999999998 9999999999999999999876543221 1257899999999999999999999999
Q ss_pred CCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEEEccccCCCCCCCCCCCCChhhccccc
Q 008040 137 DSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQR 216 (580)
Q Consensus 137 ~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~vls~a~~plP~~~~~l~d~e~r~r~R 216 (580)
++|.||||++++.++++.|+.+++ |+.||+|.|+|+|++|++|++||.|++|+|||+|++|||.++|+++|+++|||+|
T Consensus 112 ~sg~iQvv~~~~~~~~~~~~~~~~-l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~~plP~k~~~l~d~e~r~r~R 190 (529)
T 4ex5_A 112 GSGQIQFFVTPADVGAETYDAFKK-WDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQR 190 (529)
T ss_dssp SSCEEEEEECHHHHCHHHHHHHHT-CCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCSSCCCC------CTTHHHHTH
T ss_pred CCeeEEEEEECCcCCHHHHHHHhc-CCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCCCCCCccccCCcChhhhhhhh
Confidence 999999999987666678888877 6999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhc
Q 008040 217 YVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIG 296 (580)
Q Consensus 217 ~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~ 296 (580)
|||||+|+.++++|++||+|+++||+||.++||+||+||+|++++|||+++||.|++|+++.++||+||||||||+||||
T Consensus 191 yLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~ 270 (529)
T 4ex5_A 191 YVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVG 270 (529)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHT
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccccccCCcceecccCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEecccccCCCCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCceeecCCCCcceeeHH
Q 008040 297 GFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMH 376 (580)
Q Consensus 297 g~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~~i~~~~pf~rit~~ 376 (580)
||+||||||||||||++++|||||||||||||||+||+|+|+++|+||+++++.+.+++.+.|.+..++++.||+||||.
T Consensus 271 G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~id~~~pf~Rity~ 350 (529)
T 4ex5_A 271 GFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTIT 350 (529)
T ss_dssp TCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEETTSCCEEEEHH
T ss_pred CCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCceecCceeeccCCCceEEEHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-CCCCCCCCCHHHHHHHHHHHcCCCCCCccccccC----CCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCC
Q 008040 377 NLVKEATG-IDFNELGNDLKVAKETTLRALGDGLENKDKFVIE----SSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIE 451 (580)
Q Consensus 377 eai~~~~g-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~ 451 (580)
||++++.| +++..+. +.+.+.+++++ +|+. ++. .| .+|++++++|+.++|+++++||||+|||.+
T Consensus 351 eAi~~~~~~~~~~~~~-~~~~l~~~~~~-~g~~-------~~~~~~~~~-~~g~l~~e~~~~~vE~~l~~P~FI~dyP~~ 420 (529)
T 4ex5_A 351 QAIQKYAPSYTDGQLS-DDAFLRSELKR-LGVD-------VTQPAFLNA-GIGALQLALFEETAEAQLWEPTFIIDYPIE 420 (529)
T ss_dssp HHHHHHCTTSCHHHHT-CHHHHHHHHHH-TTCC-------TTSGGGTTC-CHHHHHHHHHHHHTGGGCCSCEEEEEEEGG
T ss_pred HHHHHHhCCCChhhcC-CHHHHHHHHHH-cCCC-------CCCcccCCC-CHHHHHHHHHHHHhccccCCCEEEECCchh
Confidence 99999988 6543333 56777788877 7873 222 23 459999999999999999999999999999
Q ss_pred CCccccccCCCCCceeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccC
Q 008040 452 ISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVT 531 (580)
Q Consensus 452 ~~pfa~~~~~~~~~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~ 531 (580)
++||||++++||++++|||||++|+||+|||+|+|||++|++||++|++. +..|++++++
T Consensus 421 ~splak~~~~~p~~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~------------------~~~gd~ea~~-- 480 (529)
T 4ex5_A 421 VSPLARESDTVAGITERFELFITGREIANGFSELNDPEDQAARFKKQVEQ------------------KDAGDEEAMF-- 480 (529)
T ss_dssp GCTTBCBCSSSTTEEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHH------------------HHTTCTTSCC--
T ss_pred hCCCcccCCCCCCceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHH------------------HhcCCccccc--
Confidence 99999999999999999999999999999999999999999999999877 5678888887
Q ss_pred CcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 532 LDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 532 ~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
+|+|||+|++||||||||||||||||||+|||++||||||+||+||++
T Consensus 481 ~De~yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~~ 528 (529)
T 4ex5_A 481 FDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRRE 528 (529)
T ss_dssp CCHHHHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCCC
T ss_pred chHHHHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCCC
Confidence 899999999999999999999999999999999999999999999986
No 2
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=4.2e-129 Score=1069.21 Aligned_cols=492 Identities=39% Similarity=0.680 Sum_probs=449.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCCCccCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCC-CeEEEEEe
Q 008040 57 SDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFG-KLAFLTLR 135 (580)
Q Consensus 57 ~~~~e~~~~R~~kl~~L~~~g~~pyp~~~~~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~g-k~~F~~Lr 135 (580)
.+++++.+.|++|+++|++.|++|||++|.++|++.+++++|.++..++.. .+++|+|+|||+++|.+| |++|++|+
T Consensus 3 ~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~v~Grv~~~R~~gkk~~F~~Lr 80 (521)
T 3bju_A 3 VDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHL--TDITLKVAGRIHAKRASGGKLIFYDLR 80 (521)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCSSCSCCCCCSCHHHHHHHHTTCCTTCBC--SSCCEEEEEEEEEEEESSSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCcCcCccchHHHHHHhhhhcccccc--CCcEEEEEEEEEEEecCCCCcEEEEEE
Confidence 468899999999999999999999999999999999999999888665432 357899999999999999 99999999
Q ss_pred eCCeeEEEEEecCcc-ChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEEEccccCCCCCCCCCCCCChhhccc
Q 008040 136 DDSGTIQLYCEKERL-LSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYR 214 (580)
Q Consensus 136 D~sg~iQvv~~~~~~-~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~vls~a~~plP~~~~~l~d~e~r~r 214 (580)
|++|.||||++++.+ +++.|+.+.+.|+.||+|.|+|+|++|++|++||.|++|+|||+|+.|+|.+++++.++++|||
T Consensus 81 D~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r 160 (521)
T 3bju_A 81 GEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYR 160 (521)
T ss_dssp ETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCCSCCCCC----CCHHHHHH
T ss_pred ECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEeEEEEeecCCCCCCCccccccChhhhhh
Confidence 999999999998765 5567876644479999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHH
Q 008040 215 QRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRML 294 (580)
Q Consensus 215 ~R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~ll 294 (580)
+||||||+|+.++++|++||+|+++||+||.++||+||+||+|++++|||+|+||.|++|++|.++||+||||||||+||
T Consensus 161 ~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~li 240 (521)
T 3bju_A 161 QRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLV 240 (521)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHH
T ss_pred hhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCceeEEecccccCCCCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCce-------eecCC
Q 008040 295 IGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGV-------EICLE 367 (580)
Q Consensus 295 v~g~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~-------~i~~~ 367 (580)
+|||+||||||||||||++++||||||||||+||||+||+|||+++|+||+++++.+.+++.+.|.+. .++++
T Consensus 241 v~g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~ 320 (521)
T 3bju_A 241 VGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFT 320 (521)
T ss_dssp HTTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECC
T ss_pred hcCcCceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999988888766 67899
Q ss_pred CCcceeeHHHHHHHHhCCCCCC---CCC--CHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCCc
Q 008040 368 RPWRRETMHNLVKEATGIDFNE---LGN--DLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQP 442 (580)
Q Consensus 368 ~pf~rit~~eai~~~~g~~~~~---~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P 442 (580)
.||+|+||.||++++.|+++.. +.. ..+.+.+++.+ +|+. +...+ .+|++++++|+.++++++.+|
T Consensus 321 ~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~-~~~~-------~~~~~-~~~~~l~~~~e~~ve~~l~~P 391 (521)
T 3bju_A 321 PPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVA-KAVE-------CPPPR-TTARLLDKLVGEFLEVTCINP 391 (521)
T ss_dssp SSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHH-TTCC-------CCSCC-CHHHHHHHHHHHHTGGGCCSC
T ss_pred CCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHH-cCCC-------CCCCC-CHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999988753 221 12344555666 6762 22223 459999999999999999999
Q ss_pred EEEEecCCCCCccccccCCCCCceeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhc
Q 008040 443 TFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKE 522 (580)
Q Consensus 443 ~fV~dyP~~~~pfa~~~~~~~~~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~ 522 (580)
|||+|||.+++||||++++||++++|||||++|.||+|||+|+|||.+|++||++|++. +..
T Consensus 392 ~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~------------------~~~ 453 (521)
T 3bju_A 392 TFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKA------------------KAA 453 (521)
T ss_dssp EEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHH------------------HHH
T ss_pred EEEECCccccCcccccCCCCCCeeeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHH------------------Hhc
Confidence 99999999999999999999999999999999999999999999999999999999766 566
Q ss_pred CCccccccCCcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 523 SDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 523 ~~~e~~~~~~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
|++++++ +|+|||+||+||||||||||||||||||+|||++||||||+||++|++
T Consensus 454 g~~e~~~--~d~~yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 454 GDDEAMF--IDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp TCTTSCC--CCHHHHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred CCChhhc--chHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 7888876 899999999999999999999999999999999999999999999985
No 3
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=1.4e-129 Score=1068.15 Aligned_cols=490 Identities=44% Similarity=0.756 Sum_probs=447.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCCCccCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEee
Q 008040 57 SDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRD 136 (580)
Q Consensus 57 ~~~~e~~~~R~~kl~~L~~~g~~pyp~~~~~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD 136 (580)
.+++++.+.|++|+++|+ .|++|||+.|.+||+|++++++|.+++.++.. ..|++|+|+|||+++|.+||++|++|||
T Consensus 12 ~~~~~~~~~r~~k~~~l~-~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~v~Gwv~~~R~~gk~~F~~LrD 89 (504)
T 1e1o_A 12 IDFNDELRNRREKLAALR-QQGVAFPNDFRRDHTSDQLHEEFDAKDNQELE-SLNIEVSVAGRMMTRRIMGKASFVTLQD 89 (504)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHSCSSCCCCCCSCCHHHHHHHHTTCCHHHHH-HHCCEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHHH-hCCCCCCCCCcCceEHHHHHHHhhccCccccc-cCCCEEEEEEEEEEEecCCCcEEEEEEE
Confidence 357899999999999999 99999999999999999999999765432211 1247899999999999999999999999
Q ss_pred CCeeEEEEEecCccChHHHH-hhhcccCCCcEEEEEeEEEecCCceeEEEEeEEEEccccCCCCCCCCCCCCChhhcccc
Q 008040 137 DSGTIQLYCEKERLLSDQFD-QLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQ 215 (580)
Q Consensus 137 ~sg~iQvv~~~~~~~~~~~~-~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~vls~a~~plP~~~~~l~d~e~r~r~ 215 (580)
++|.||||++++.++++.|+ .+++ |+.||+|.|+|+|++|++|++||.|++++|||+|+.|||.++|++.|+++|||+
T Consensus 90 ~sg~iQvv~~~~~~~~~~~~~~~~~-l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~a~~plP~k~~~~~~~e~r~r~ 168 (504)
T 1e1o_A 90 VGGRIQLYVARDSLPEGVYNDQFKK-WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQ 168 (504)
T ss_dssp TTEEEEEEEETTTSSTTHHHHTGGG-CCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCC-------TTHHHHT
T ss_pred CCeeEEEEEECCcCCHHHHHHHHhc-CCCCCEEEEEEEEEecCCceEEEEEEEEEEecccCCCCCccccCCcChhhhhhc
Confidence 99999999998877667888 6765 699999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHh
Q 008040 216 RYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLI 295 (580)
Q Consensus 216 R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv 295 (580)
||||||+||.++++|++||+|+++||+||.++||+||+||+|+++++||+|+||.|++|++|.++||+||||||||+||+
T Consensus 169 RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v 248 (504)
T 1e1o_A 169 RYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVV 248 (504)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHH
T ss_pred cchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHHHHHHhh
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEecccccCCCCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCceeecCCCCcceeeH
Q 008040 296 GGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETM 375 (580)
Q Consensus 296 ~g~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~~i~~~~pf~rit~ 375 (580)
||++||||||||||||+++++|||||||||+||+|+||+|||+++|+||+++++.+.+++.+.|.+..++++.||+|+||
T Consensus 249 ~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~~~~pf~rity 328 (504)
T 1e1o_A 249 GGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTM 328 (504)
T ss_dssp HTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETTSCCEEEEH
T ss_pred cCCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeeccCCCceEEeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHhC-CCCCCCCCCHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCc
Q 008040 376 HNLVKEATG-IDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISP 454 (580)
Q Consensus 376 ~eai~~~~g-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~p 454 (580)
.||++++.| +++.... +.+.+.+.+.+ +|+. +...+ .+|+++.++|+.++|+++.+|+||+|||.+++|
T Consensus 329 ~eAi~~~~~d~d~~~~~-~~~~~~~~~~~-~g~~-------~~~~~-~~g~l~~~~~~~~ve~~~~~p~fV~dyP~~~~p 398 (504)
T 1e1o_A 329 REAIKKYRPETDMADLD-NFDAAKALAES-IGIT-------VEKSW-GLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSP 398 (504)
T ss_dssp HHHHHHHSTTCCGGGGG-SHHHHHHHHHH-TTCC-------CCTTC-CHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCT
T ss_pred HHHHHHHcCCCCccccC-CHHHHHHHHHH-cCCC-------CCCCc-CHhHHHHHHHHHHhhccCCCeEEEECCCcccCc
Confidence 999999999 8876543 56777777777 7873 32333 359999999999999999999999999999999
Q ss_pred cccccCCCCCceeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcH
Q 008040 455 LAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDD 534 (580)
Q Consensus 455 fa~~~~~~~~~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~ 534 (580)
|||++++||++++|||||++|+||+|||+|+|||++|+++|++++.. +..+++++++ +|+
T Consensus 399 f~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~------------------~~~~~~e~~~--~d~ 458 (504)
T 1e1o_A 399 LARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNA------------------KAAGDDEAMF--YDE 458 (504)
T ss_dssp TBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHH------------------HHTTCTTCCC--CCH
T ss_pred CcCCCCCCCCceEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHH------------------hhcCChhhhh--chH
Confidence 99999999999999999999999999999999999999999999866 4667888887 899
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 535 DFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 535 ~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
|||+|++||||||||||||||||||+|||.+||||||+||++|++
T Consensus 459 ~yl~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 459 DYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQ 503 (504)
T ss_dssp HHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC-
T ss_pred HHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 999999999999999999999999999999999999999999986
No 4
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=1.6e-128 Score=1058.35 Aligned_cols=490 Identities=47% Similarity=0.855 Sum_probs=450.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCCCccCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEee
Q 008040 57 SDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRD 136 (580)
Q Consensus 57 ~~~~e~~~~R~~kl~~L~~~g~~pyp~~~~~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD 136 (580)
.+++++.+.|++|+++|++.|++|||+.|.+||+|++++++|.++..++.. ..|++|+|+|||+++|.+||++|++|||
T Consensus 3 ~~~~~~~~~r~~k~~~l~~~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~v~Gwv~~~R~~gk~~F~~LrD 81 (493)
T 3a74_A 3 EELNDQLRVRREKLKKIEELGVDPFGKRFERTHKAEELFELYGDLSKEELE-EQQIEVAVAGRIMTKRGMGKAGFAHIQD 81 (493)
T ss_dssp -CTTHHHHHHHHHHHHHHHTTCCTTCCCCCCSCCHHHHHHHHTTSCHHHHH-HHCCEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCCCCCCcCceehHHHHHhhccccchhhc-cCCCEEEEEEEEEEEecCCCcEEEEEEE
Confidence 347799999999999999999999999999999999999999765432211 1247899999999999999999999999
Q ss_pred CCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEEEccccCCCCCCCCCCCCChhhccccc
Q 008040 137 DSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQR 216 (580)
Q Consensus 137 ~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~vls~a~~plP~~~~~l~d~e~r~r~R 216 (580)
++|.||||++++.++++.|+.+++ |+.||+|.|+|+|++|++|++||.|++++|||+|+.|||.++|++.|+++|||+|
T Consensus 82 ~sg~iQvv~~~~~~~~~~~~~~~~-l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~~~~plP~k~~~~~~~e~r~r~R 160 (493)
T 3a74_A 82 VTGQIQIYVRQDDVGEQQYELFKI-SDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQR 160 (493)
T ss_dssp TTEEEEEEEEHHHHHHHHHHHHHH-CCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCCC-----CHHHHHHTH
T ss_pred CCEeEEEEEECCcCCHHHHHHHhc-CCCCCEEEEEEEEEeCCCCcEEEEEEEEEEcccccCCCCccccCCCCHhhhhhcc
Confidence 999999999887655667888866 6999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhc
Q 008040 217 YVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIG 296 (580)
Q Consensus 217 ~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~ 296 (580)
|||||+||.++++|++||+|+++||+||.++||+||+||+|+++++|++|+||.|++|++|.++|||||||||||+||+|
T Consensus 161 yldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~ 240 (493)
T 3a74_A 161 YLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVG 240 (493)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHT
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHHHHHhhc
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEecccccCCCCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCceeecCCCCcceeeHH
Q 008040 297 GFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMH 376 (580)
Q Consensus 297 g~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~~i~~~~pf~rit~~ 376 (580)
|++||||||||||||+++++|||||||||+||+|+|++|||+++|+||+++++.+.+++.+.|.+..++++.||+|+||.
T Consensus 241 G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~~pf~rity~ 320 (493)
T 3a74_A 241 GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMV 320 (493)
T ss_dssp TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECCSSCEEEEHH
T ss_pred ccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeeccCCCcceeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCC-CCCCCCHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCcc
Q 008040 377 NLVKEATGIDF-NELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPL 455 (580)
Q Consensus 377 eai~~~~g~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~pf 455 (580)
||++++.|+++ ..+ +.+++.+.+++ .|++ +.+.+ .+|+++.++++.++|+++.+|+||+|||.+++||
T Consensus 321 eai~~~~~~d~~~~~--~~~~~~~~~~~-~g~~-------~~~~~-~~g~l~~~~~~~~ve~~~~~p~fv~dyP~~~~pf 389 (493)
T 3a74_A 321 DAIKEYVGVDFWRQM--SDEEARELAKE-HGVE-------VAPHM-TFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPL 389 (493)
T ss_dssp HHHHHHTCCCTTSCC--CHHHHHHHHHH-TTCC-------CCTTC-CHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTT
T ss_pred HHHHHHhCCCCcccc--CHHHHHHHHHH-cCCC-------CCCCc-ChhHHHHHHHHHHhhcccCCcEEEECCCcccCCc
Confidence 99999999887 443 56778888887 7773 22223 3599999999999999999999999999999999
Q ss_pred ccccCCCCCceeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHH
Q 008040 456 AKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDD 535 (580)
Q Consensus 456 a~~~~~~~~~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~ 535 (580)
||++++||++++|||||++|+||+|||+|+|||++|+++|++++.. +..+++++++ +|+|
T Consensus 390 ~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~------------------~~~~~~e~~~--~d~~ 449 (493)
T 3a74_A 390 AKKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKE------------------REQGNDEAHE--MDED 449 (493)
T ss_dssp BCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHH------------------HHTTCTTSCC--CCHH
T ss_pred cCcCCCCCCeEEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHH------------------hhcCCchhhh--ccHH
Confidence 9999999999999999999999999999999999999999999876 4667888877 8999
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 536 yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
||+|++||||||||||||||||||+|||.+||||||+||++||+
T Consensus 450 yl~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 493 (493)
T 3a74_A 450 FLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQMRHK 493 (493)
T ss_dssp HHHHHHTCCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCCC
T ss_pred HHHHHhCCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 99999999999999999999999999999999999999999984
No 5
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=5.1e-106 Score=895.00 Aligned_cols=437 Identities=25% Similarity=0.429 Sum_probs=368.4
Q ss_pred cCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCc
Q 008040 87 RTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGD 166 (580)
Q Consensus 87 ~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd 166 (580)
+||+|+++...+ . |++|+|+|||+++|++|+++|++|||++|.||||++++. + .|+.+++ |+.||
T Consensus 3 rt~~~~~l~~~~----~-------g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~--~-~~~~~~~-l~~e~ 67 (580)
T 1l0w_A 3 RTHYAGSLRETH----V-------GEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPAS--P-AYATAER-VRPEW 67 (580)
T ss_dssp CSSCGGGCCGGG----T-------TCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTS--T-THHHHTT-CCTTC
T ss_pred cEEEHHHhHHHh----C-------CCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh--h-HHHHHhc-CCCCc
Confidence 789999988755 2 378999999999999999999999999999999998764 2 6777766 69999
Q ss_pred EEEEEeEEEec-------CCceeEEEEeEEEEccccCCCCC--CCC------CCCCChhhccccceeeeecCHHHHHHHH
Q 008040 167 ILGVSGSMKRT-------EKGELSVLVNSFVILTKSLLPLP--DKY------HGLTDVDKRYRQRYVDMISKPEVADVFR 231 (580)
Q Consensus 167 ~v~v~G~v~~t-------~~ge~el~~~~i~vls~a~~plP--~~~------~~l~d~e~r~r~R~ldl~~~~~~~~~~~ 231 (580)
+|.|+|+|.++ ++|++||.|++++|||+|. ++| ... ++..++++|+++|||||| ||.++++|+
T Consensus 68 ~V~V~G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~-~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR-~~~~~~~l~ 145 (580)
T 1l0w_A 68 VVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAK-TPPFPVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLR 145 (580)
T ss_dssp EEEEEEEEEECSSCCTTSTTTTEEEEEEEEEEEECCC-CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTT-SHHHHHHHH
T ss_pred EEEEEEEEEcCCCcCccCCCccEEEEEeEEEEeccCc-CCCCCcchhccccccccCCHHHhhhhhHHHhc-CHHHHHHHH
Confidence 99999999987 5799999999999999997 555 322 678899999999999997 999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeeecCceeec-cCCCCCCCceeeccCCCCeeEE-EEecHHHHHHHHHhccCCceeEEecccc
Q 008040 232 KRAKIVSEIRKTVESLGFVEVETPVLQG-AAGGAEARPFVTYHNSLGRDLY-LRIATELHLKRMLIGGFEKIYEIGRIFR 309 (580)
Q Consensus 232 ~Rs~i~~~iR~fl~~~gF~EVeTPiL~~-~~~Ga~a~pF~t~~~~~~~~~y-L~~Spql~lk~llv~g~~rVfeIg~~FR 309 (580)
+||+|+++||+||.++||+||+||+|++ +++| |++|.|+++.++.++| |+||||||||+||+||++||||||||||
T Consensus 146 ~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~eG--Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR 223 (580)
T 1l0w_A 146 LRHRVIKAIWDFLDREGFVQVETPFLTKSTPEG--ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFR 223 (580)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS--SCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC--CCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceee
Confidence 9999999999999999999999999995 5676 5899999998877776 9999999999999999999999999999
Q ss_pred cCCCCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCceeecCCCCcceeeHHHHHHHHhCCCCCC
Q 008040 310 NEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNE 389 (580)
Q Consensus 310 ~E~~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~ 389 (580)
||+++++|+||||||||||+|+|++|+|+++|+||+++++.+.+ ++++.||+|+||.||++.|. .|-++
T Consensus 224 ~E~~~~~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~----------~~~~~pf~rity~eA~~~~g-~dkpd 292 (580)
T 1l0w_A 224 DEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALG----------VELPLPFPRLSYEEAMERYG-SDKPD 292 (580)
T ss_dssp CCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTC----------CCCCSSCCEEEHHHHHHHHS-SSSCC
T ss_pred CCCCCCCcCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhC----------CccCCCccEEEHHHHHHHhc-CCCcc
Confidence 99999999999999999999999999999999999999999976 24567999999999999984 32111
Q ss_pred C---------C----------------------------CCHHHHHHHHHHHcCCCCCC--ccc-c-cc-----------
Q 008040 390 L---------G----------------------------NDLKVAKETTLRALGDGLEN--KDK-F-VI----------- 417 (580)
Q Consensus 390 ~---------~----------------------------~~~~~~~~~~~~~~g~~~~~--~~~-~-~~----------- 417 (580)
+ . .+++.+.+.+++ +|.+... .|. . ..
T Consensus 293 ~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~k~l~~~~ 371 (580)
T 1l0w_A 293 LRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKR-HKAQGLAWARVEEGGFSGGVAKFLEPVR 371 (580)
T ss_dssp CSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHH-TSCSCCEEEEEETTEEESTTHHHHGGGH
T ss_pred cccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHH-cCCCcceEEEecCccccchhhhhhhHHH
Confidence 0 0 012344555555 5542110 000 0 00
Q ss_pred -----------------------CCCCcHHhHHHHHHHH--HhcCCCCCcEEEEecCCC------------CCccccccC
Q 008040 418 -----------------------ESSPSVGNLLNEVFEI--VVEPKLVQPTFVLDYPIE------------ISPLAKPHR 460 (580)
Q Consensus 418 -----------------------~~~~~lg~~l~~~~~~--~ve~~l~~P~fV~dyP~~------------~~pfa~~~~ 460 (580)
..+..+|++..++++. ++++ ..+|+||+|||.. ++||||+++
T Consensus 372 ~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~ 450 (580)
T 1l0w_A 372 EALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHP 450 (580)
T ss_dssp HHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCS
T ss_pred HHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-ccCeEEEEcCCcccccccccccccccCCccCCCc
Confidence 0013457777777776 6777 7799999999996 899999987
Q ss_pred C-------CCC-c-eeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccC
Q 008040 461 R-------HAG-L-TERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVT 531 (580)
Q Consensus 461 ~-------~~~-~-~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~ 531 (580)
+ ||+ + +++||||+||+||+|||+|+|||++|+++|+++ ..+++++..
T Consensus 451 ~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~----------------------g~~~ee~~~-- 506 (580)
T 1l0w_A 451 EDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLL----------------------GIGEEEQRE-- 506 (580)
T ss_dssp TTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHH----------------------TCCTTTHHH--
T ss_pred hhhhhhcCCccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHHHc----------------------CCChhHHHh--
Confidence 6 573 6 899999999999999999999999999999865 122334333
Q ss_pred CcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 532 LDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 532 ~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
.|+|||+||+||||||||||||||||||+|||.+||||||+||++++.
T Consensus 507 ~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~ 554 (580)
T 1l0w_A 507 KFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEG 554 (580)
T ss_dssp HTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTS
T ss_pred HHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCc
Confidence 478999999999999999999999999999999999999999999863
No 6
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=3.1e-105 Score=891.07 Aligned_cols=438 Identities=26% Similarity=0.438 Sum_probs=369.8
Q ss_pred cCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCc
Q 008040 87 RTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGD 166 (580)
Q Consensus 87 ~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd 166 (580)
+||+|+++...+ . |++|+|+|||+++|++|+++|++|||++|.||||++++. .+.|+.+++ |+.||
T Consensus 2 rt~~~~~l~~~~----~-------g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~--~~~~~~~~~-l~~e~ 67 (585)
T 1c0a_A 2 RTEYCGQLRLSH----V-------GQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDR--ADALKLASE-LRNEF 67 (585)
T ss_dssp CSSCGGGCCGGG----T-------TCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGGG--HHHHHHHTT-CCTTC
T ss_pred ceeEHHHHHHHh----C-------CCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCCc--hHHHHHHhc-CCCCC
Confidence 688999887755 2 378999999999999999999999999999999998764 467887766 69999
Q ss_pred EEEEEeEEEec---------CCceeEEEEeEEEEccccCCCCCCCCCCCCChhhccccceeeeecCHHHHHHHHHHHHHH
Q 008040 167 ILGVSGSMKRT---------EKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIV 237 (580)
Q Consensus 167 ~v~v~G~v~~t---------~~ge~el~~~~i~vls~a~~plP~~~~~l~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~ 237 (580)
+|.|+|+|.++ ++|++||.|++++|||+|. ++|.++++..++++|+++|||||| ||.++++|++||+|+
T Consensus 68 ~V~V~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR-~~~~~~~l~~Rs~i~ 145 (585)
T 1c0a_A 68 CIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKIT 145 (585)
T ss_dssp EEEEEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHH
T ss_pred EEEEEeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhc-CHHHHHHHHHHHHHH
Confidence 99999999987 5799999999999999998 788888888899999999999997 999999999999999
Q ss_pred HHHHHHHHhCCCeeecCceeec-cCCCCCCCceeeccCCCCeeEE-EEecHHHHHHHHHhccCCceeEEecccccCCCCC
Q 008040 238 SEIRKTVESLGFVEVETPVLQG-AAGGAEARPFVTYHNSLGRDLY-LRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST 315 (580)
Q Consensus 238 ~~iR~fl~~~gF~EVeTPiL~~-~~~Ga~a~pF~t~~~~~~~~~y-L~~Spql~lk~llv~g~~rVfeIg~~FR~E~~~~ 315 (580)
++||+||.++||+||+||+|++ +++| |++|.|+++.++.++| |+||||||||+||+|||+||||||||||||++++
T Consensus 146 ~~iR~fl~~~gFlEVeTPiL~~s~~eG--Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t 223 (585)
T 1c0a_A 146 SLVRRFMDDHGFLDIETPMLTKATPEG--ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRA 223 (585)
T ss_dssp HHHHHHHHHTTCEECCCCSSBCCCSSS--SCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBT
T ss_pred HHHHHHHHhCCcEEEeCCEEecCCCCC--CccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCC
Confidence 9999999999999999999995 5676 5899999998876665 9999999999999999999999999999999999
Q ss_pred CCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCceeecCCCCcceeeHHHHHHHHhCCCCCCC-----
Q 008040 316 RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNEL----- 390 (580)
Q Consensus 316 rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~~----- 390 (580)
+|+|||||||+||+|+|++|+|+++|+||+++++.+.+. ++.. |+|+||.||++.|. .|.++.
T Consensus 224 ~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~----------~~~~-f~r~ty~ea~~~~g-~dkpd~r~~~~ 291 (585)
T 1c0a_A 224 DRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGV----------DLGD-FPVMTFAEAERRYG-SDKPDLRNPME 291 (585)
T ss_dssp TBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSC----------CCCS-CCEEEHHHHHHHHS-CSSCCTTSCCC
T ss_pred CcCcccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------Cccc-cceeeHHHHHHHhc-CCCccccCCce
Confidence 999999999999999999999999999999999998763 2334 99999999999883 332110
Q ss_pred --------------------------------------C-CCHHHHHHHHHHHcCCCCCC--cccc-------c--c---
Q 008040 391 --------------------------------------G-NDLKVAKETTLRALGDGLEN--KDKF-------V--I--- 417 (580)
Q Consensus 391 --------------------------------------~-~~~~~~~~~~~~~~g~~~~~--~~~~-------~--~--- 417 (580)
. ..++++.+.+++ .|.+... .|.+ + +
T Consensus 292 l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~k 370 (585)
T 1c0a_A 292 LTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKI-YGAKGLAYIKVNERAKGLEGINSPVAK 370 (585)
T ss_dssp EEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHH-TTCSCCCEEEESCGGGGGGGEECTTGG
T ss_pred eEEehhhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHH-cCCCCceeEEecccccccccccchhhh
Confidence 0 012334444444 4432100 0000 0 0
Q ss_pred ------------------------------CCCCcHHhHHHHHHHH--HhcCCCCCcEEEEecCCC-----------CCc
Q 008040 418 ------------------------------ESSPSVGNLLNEVFEI--VVEPKLVQPTFVLDYPIE-----------ISP 454 (580)
Q Consensus 418 ------------------------------~~~~~lg~~l~~~~~~--~ve~~l~~P~fV~dyP~~-----------~~p 454 (580)
..+..+|+++.++++. ++++...+|+||+|||.. ++|
T Consensus 371 ~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~P 450 (585)
T 1c0a_A 371 FLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP 450 (585)
T ss_dssp GSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEEECSSSCEEESSCT
T ss_pred hcCHHHHHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccccccEEEEeCCccccccccccccccCC
Confidence 0013468888888887 678877899999999996 899
Q ss_pred cccccCC-------CCC-c-eeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCc
Q 008040 455 LAKPHRR-------HAG-L-TERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDD 525 (580)
Q Consensus 455 fa~~~~~-------~~~-~-~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 525 (580)
|||++++ ||+ + +++||||+||+||+|||+|+|||++|+++|+++. .+++
T Consensus 451 Ft~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g----------------------~~~e 508 (585)
T 1c0a_A 451 FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILG----------------------INEE 508 (585)
T ss_dssp TBCBSSCCHHHHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTT----------------------CCHH
T ss_pred ccCCCchhhhhhccCCcceeeeEEEEEECCEEEeeeeeecCCHHHHHHHHHHcC----------------------CChH
Confidence 9999876 574 6 8999999999999999999999999999998641 1222
Q ss_pred cccccCCcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 526 HSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 526 e~~~~~~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
++.. .++|||+||+||||||||||||||||||+|||.+||||||+||++++.
T Consensus 509 e~~~--~~~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdVi~FPr~~~~ 560 (585)
T 1c0a_A 509 EQRE--KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAA 560 (585)
T ss_dssp HHHH--HHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTS
T ss_pred HHHh--hHHHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHheecCCCCCCc
Confidence 3322 478999999999999999999999999999999999999999999863
No 7
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1.6e-104 Score=857.29 Aligned_cols=420 Identities=26% Similarity=0.435 Sum_probs=361.0
Q ss_pred ccCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCC
Q 008040 86 DRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIG 165 (580)
Q Consensus 86 ~~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g 165 (580)
.|||+|+++.+.+ . |++|+|+|||+++|.+||++|++|||++|.||||++++.++++.|+.+++ |+.|
T Consensus 2 ~rt~~~~~l~~~~----~-------g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~-l~~~ 69 (438)
T 3nem_A 2 YRTHYSSEITEEL----N-------GQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK-LRSE 69 (438)
T ss_dssp CCSCCGGGCCGGG----T-------TCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGG-CCTT
T ss_pred ceEEEHHHcchhc----C-------CCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhc-CCCC
Confidence 4899999987653 2 47899999999999999999999999999999999988777778988877 6999
Q ss_pred cEEEEEeEEEecCC--ceeEEEEeEEEEccccCCCCCCCCCC--CCChhhccccceeeeecCHHHHHHHHHHHHHHHHHH
Q 008040 166 DILGVSGSMKRTEK--GELSVLVNSFVILTKSLLPLPDKYHG--LTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIR 241 (580)
Q Consensus 166 d~v~v~G~v~~t~~--ge~el~~~~i~vls~a~~plP~~~~~--l~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~~~iR 241 (580)
|+|.|+|+|+++++ |++||.|++++|||+|..|+|.++++ ..++++|+++||||| +||.++++|++||+|+++||
T Consensus 70 ~~V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldl-r~~~~~~~~~~Rs~i~~~iR 148 (438)
T 3nem_A 70 DVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDL-RRPEVMAIFKIRSSVFKAVR 148 (438)
T ss_dssp CEEEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHT-TSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHh-cCHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 89999999999999999999988776 478999999999999 58999999999999999999
Q ss_pred HHHHhCCCeeecCceeeccC--CCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecccccCCCCC-CCC
Q 008040 242 KTVESLGFVEVETPVLQGAA--GGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHN 318 (580)
Q Consensus 242 ~fl~~~gF~EVeTPiL~~~~--~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~FR~E~~~~-rH~ 318 (580)
+||.++||+||+||+|+++. ||+.+.|| ++++.++||+||||||||+||++|++||||||||||||++++ |||
T Consensus 149 ~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~----~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~ 224 (438)
T 3nem_A 149 DFFHENGFIEIHTPKIIATATEGGTELFPM----KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHL 224 (438)
T ss_dssp HHHHHTTCEECCCCSEESSCSSCSSSCCEE----EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCC
T ss_pred HHHHHCCcEEEeCCEEecCCCCCCccceeE----eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccc
Confidence 99999999999999999763 44444444 357899999999999999999999999999999999999996 999
Q ss_pred ccceeeeeEeecCC-HHHHHHHHHHHHHHHHHHHhCCce--eecCceeec-CCCCcceeeHHHHHHHH--hCCCCCCCCC
Q 008040 319 PEFTTIEMYEAYSD-YQSMMNITEEIVTHCALAVNGKLT--IDYQGVEIC-LERPWRRETMHNLVKEA--TGIDFNELGN 392 (580)
Q Consensus 319 pEFtmlE~e~a~~d-~~d~m~l~E~li~~~~~~v~~~~~--~~~~~~~i~-~~~pf~rit~~eai~~~--~g~~~~~~~~ 392 (580)
||||||||||+|.| |+|+|+++|+||+++++.+.+.+. +.+.+..++ ++.||+|+||.||++.+ .|+++....
T Consensus 225 pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~~g~~~~~~~- 303 (438)
T 3nem_A 225 NEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGE- 303 (438)
T ss_dssp SEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCCCCTTS-
T ss_pred cceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHHcCCCCCCCC-
Confidence 99999999999999 999999999999999999987552 445554443 46799999999999864 344332110
Q ss_pred CHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCcc-ccccCCCCCceeEEEE
Q 008040 393 DLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPL-AKPHRRHAGLTERFEL 471 (580)
Q Consensus 393 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~pf-a~~~~~~~~~~~rFdL 471 (580)
++. ....+++.+.++.. ...+||||+|||.+++|| ++++++||++++||||
T Consensus 304 dl~-------------------------~~~e~~l~~~~~~~---~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL 355 (438)
T 3nem_A 304 DID-------------------------TEGERLLGKYMMEN---ENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDL 355 (438)
T ss_dssp CCC-------------------------HHHHHHHHHHHHHH---HCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEE
T ss_pred CCC-------------------------cHHHHHHHHHhhhh---cCCCCEEEECCchhhCccccccCCCCCCceEEEEE
Confidence 110 01134444444322 346899999999999999 6788899999999999
Q ss_pred EEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHHHHHHHhcCCCCcccee
Q 008040 472 FICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMG 551 (580)
Q Consensus 472 ~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~G 551 (580)
|++|.||+|||+|+|||++|+++|+++ +.+.+ .++|||+|++||||||||||
T Consensus 356 ~~~G~Ei~nG~~el~d~~~l~~r~~~~-----------------------g~~~~-----~~~~yl~a~~~G~pP~~G~G 407 (438)
T 3nem_A 356 EYRGVEISSGGQREHRHDILVEQIKEK-----------------------GLNPE-----SFEFYLKAFRYGMPPHGGFG 407 (438)
T ss_dssp EETTEEEEEEEEBCCCHHHHHHHHHHT-----------------------TCCGG-----GGHHHHHTTSSCCCCEEEEE
T ss_pred EECCEEEEeCeeecCCHHHHHHHHHHc-----------------------CCChh-----HHHHHHHHHHcCCCCceEEE
Confidence 999999999999999999999998753 12222 35799999999999999999
Q ss_pred ccHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 552 LGIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 552 iGiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
||||||||++||.+||||||+||+.+..
T Consensus 408 lGidRLvm~l~g~~~Irdvi~FPr~~~r 435 (438)
T 3nem_A 408 LGAERLIKQMLDLPNIREVILFPRDRRR 435 (438)
T ss_dssp EEHHHHHHHHTTCSCGGGGSSSCCCSSC
T ss_pred EhHHHHHHHHhCCCcHHHcccCCCCccC
Confidence 9999999999999999999999998753
No 8
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=3.7e-102 Score=842.74 Aligned_cols=405 Identities=20% Similarity=0.295 Sum_probs=345.1
Q ss_pred CCCCEEEEEEEEEeEecCC-CeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCC--------
Q 008040 109 SENDHVSVAGRVVARRAFG-KLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEK-------- 179 (580)
Q Consensus 109 ~~~~~V~v~GrV~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~-------- 179 (580)
..|++|+|+|||+++|.+| +++|++|||++|.||||++++... +.++ +.+ |+.||+|.|+|+|++++.
T Consensus 28 ~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~-~~~~-~~~-l~~g~~V~V~G~v~~~~~~~~~~~~~ 104 (456)
T 3m4p_A 28 LEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELC-EPEK-VKL-LTRECSLEITGRLNAYAGKNHPPEIA 104 (456)
T ss_dssp CCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTT-CHHH-HTT-CCTTCEEEEEEEEECCCSSSCCCSCT
T ss_pred cCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccch-hhHH-hhc-CCCccEEEEEeEEEecCCcccCcccC
Confidence 3468999999999999997 599999999999999999985443 2343 344 699999999999998764
Q ss_pred --ceeEEEEeEEEEccccCCCCCCCCCCCCChhhccccceeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCcee
Q 008040 180 --GELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVL 257 (580)
Q Consensus 180 --ge~el~~~~i~vls~a~~plP~~~~~l~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL 257 (580)
|++||.|++++||++|..|+|.++++..++|+|+++||||| +|+.++++|++||+|+++||+||.++||+||+||+|
T Consensus 105 t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~Ldl-R~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL 183 (456)
T 3m4p_A 105 DILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVI-RSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTI 183 (456)
T ss_dssp TBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHT-TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred CCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhh-hcHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCee
Confidence 89999999999999998888888888899999999999998 599999999999999999999999999999999999
Q ss_pred ecc-CCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecccccCCCCC-CCCccceeeeeEeecCCHHH
Q 008040 258 QGA-AGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEFTTIEMYEAYSDYQS 335 (580)
Q Consensus 258 ~~~-~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~FR~E~~~~-rH~pEFtmlE~e~a~~d~~d 335 (580)
+++ ++|+ +.+|. ++++|+++||+||||||||+|++ |++||||||||||||++++ |||||||||||||+|+||+|
T Consensus 184 ~~s~~eGg-~~~f~--~~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d 259 (456)
T 3m4p_A 184 VKTQCEGG-STLFK--LQYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFED 259 (456)
T ss_dssp EC-------CCCCE--EEETTEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHH
T ss_pred ecCCCCCc-ccccc--ccccCCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHH
Confidence 754 5553 45785 47899999999999999999875 7999999999999999985 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceeecCceeec---CCCCcceeeHHHHHHHHh--CCCCCCCCCCHHHHHHHHHHHcCCCCC
Q 008040 336 MMNITEEIVTHCALAVNGKLTIDYQGVEIC---LERPWRRETMHNLVKEAT--GIDFNELGNDLKVAKETTLRALGDGLE 410 (580)
Q Consensus 336 ~m~l~E~li~~~~~~v~~~~~~~~~~~~i~---~~~pf~rit~~eai~~~~--g~~~~~~~~~~~~~~~~~~~~~g~~~~ 410 (580)
+|+++|+||+++++.+.+.+...+....++ +..||+||||.||++.+. |++...
T Consensus 260 ~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~--------------------- 318 (456)
T 3m4p_A 260 LLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD--------------------- 318 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS---------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc---------------------
Confidence 999999999999999887654333222233 357999999999998542 332110
Q ss_pred CccccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCcc-ccccCCCCCceeEEEEEEcCE-eecccccccCCH
Q 008040 411 NKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPL-AKPHRRHAGLTERFELFICGR-EMANAFSELTDP 488 (580)
Q Consensus 411 ~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~pf-a~~~~~~~~~~~rFdL~i~G~-Ei~ng~~el~dp 488 (580)
....+|..++.+++.++++.+.+||||+|||.+++|| ++++++||++++|||||++|+ ||+|||+|+|||
T Consensus 319 --------~~~~~g~~l~~~~e~~l~~~~~~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~ 390 (456)
T 3m4p_A 319 --------KPFEYGEDISEKPERQMTDEIGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNY 390 (456)
T ss_dssp --------SCCCTTCCCCHHHHHHHHHHHTSCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCH
T ss_pred --------cCcchHHHHHHHHHHHHHHHhCceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCH
Confidence 0011256666777777777788999999999999998 577888999999999999996 999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcc
Q 008040 489 LDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIR 568 (580)
Q Consensus 489 ~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIr 568 (580)
++|++||++. +.+.+. .+|||++++||||||||||||||||||++||.+|||
T Consensus 391 ~~l~~r~~~~-----------------------g~~~~~-----~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Ir 442 (456)
T 3m4p_A 391 DELMGAYKAN-----------------------GLNPDP-----YYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIR 442 (456)
T ss_dssp HHHHHHHHTT-----------------------TCCCGG-----GHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGG
T ss_pred HHHHHHHHHc-----------------------CCCHHH-----HHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHH
Confidence 9999988632 233443 379999999999999999999999999999999999
Q ss_pred ccccCCcCCC
Q 008040 569 DVIAFPILKI 578 (580)
Q Consensus 569 dvi~FP~~~~ 578 (580)
|||+||+.+.
T Consensus 443 dvi~FPr~~~ 452 (456)
T 3m4p_A 443 KVCLYPRYLE 452 (456)
T ss_dssp GGSSSCBBTT
T ss_pred HeeccCCCCC
Confidence 9999999875
No 9
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=1.3e-100 Score=840.26 Aligned_cols=405 Identities=23% Similarity=0.406 Sum_probs=328.9
Q ss_pred CCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecC-ccChHHHHhhhcccCCCcEEEEEeEEEecC-------Ccee
Q 008040 111 NDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKE-RLLSDQFDQLKVFVDIGDILGVSGSMKRTE-------KGEL 182 (580)
Q Consensus 111 ~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~-~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~-------~ge~ 182 (580)
|++|+|+|||+++|.+||++|++|||++|+||+|++++ ..+++.++.+++ |+.||+|.|+|+|++++ +|++
T Consensus 62 g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~-l~~es~V~V~G~v~~~~~~~~~~~~~~~ 140 (548)
T 3i7f_A 62 EKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQK-ISAESICDITGIVKAVEKPIEKATQQDV 140 (548)
T ss_dssp TCEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHT-CCTTEEEEEEEEEEECSSCCTTSSSCSE
T ss_pred CCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhC-CCCCCEEEEEEEEEeCCcccccCCCCcE
Confidence 58899999999999999999999999999999999874 345567777766 69999999999999975 5899
Q ss_pred EEEEeEEEEccccCCCCCCCC---------------------------------------------C----------C--
Q 008040 183 SVLVNSFVILTKSLLPLPDKY---------------------------------------------H----------G-- 205 (580)
Q Consensus 183 el~~~~i~vls~a~~plP~~~---------------------------------------------~----------~-- 205 (580)
||+|++|+|||+|..|+|.+. | +
T Consensus 141 El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~ 220 (548)
T 3i7f_A 141 EIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYV 220 (548)
T ss_dssp EEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------------CCCCCCCC
T ss_pred EEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999988888652 1 2
Q ss_pred CCChhhccccceeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEec
Q 008040 206 LTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIA 285 (580)
Q Consensus 206 l~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~S 285 (580)
..++++||++|||||| ++.++++|++||+|+++||+||.++||+||+||+|++++++++|++|.+ ++++.++||+||
T Consensus 221 ~~~~e~rl~~R~LdLR-~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v--~~~~~~~yL~~S 297 (548)
T 3i7f_A 221 KVSQDTRLDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV--KYFDRKAYLAQS 297 (548)
T ss_dssp CCCHHHHHTTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------CCBCSC
T ss_pred cCCHHHhhhchhhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEE--ecCCCceEeccC
Confidence 3578999999999997 7999999999999999999999999999999999998876667899986 568999999999
Q ss_pred HHHHHHHHHhccCCceeEEecccccCCCCC-CCCccceeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhCCce--e----
Q 008040 286 TELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEFTTIEMYEAYS-DYQSMMNITEEIVTHCALAVNGKLT--I---- 357 (580)
Q Consensus 286 pql~lk~llv~g~~rVfeIg~~FR~E~~~~-rH~pEFtmlE~e~a~~-d~~d~m~l~E~li~~~~~~v~~~~~--~---- 357 (580)
||||||+||++|++||||||||||||++++ |||||||||||||+|. ||+|+|+++|+||+++++.+.+.+. +
T Consensus 298 pql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~ 377 (548)
T 3i7f_A 298 PQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIR 377 (548)
T ss_dssp THHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 999999999999999999999999999975 9999999999999998 7999999999999999998864331 1
Q ss_pred -ecCceeecCCCCcceeeHHHHHHHH--hCCCCCCCCCCHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHH
Q 008040 358 -DYQGVEICLERPWRRETMHNLVKEA--TGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIV 434 (580)
Q Consensus 358 -~~~~~~i~~~~pf~rit~~eai~~~--~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ 434 (580)
.+....+++ .||+|+||.||++.+ .|+++.... ++ +.....++.+.
T Consensus 378 ~~~~~~~~~~-~pf~rit~~eai~~l~~~g~~~~~~~-dl-----------------------------~~~~e~~l~~~ 426 (548)
T 3i7f_A 378 KQYPFEDLIY-RPFLRLTYKEAIEMLRASGETIGDYD-DF-----------------------------TTPQEVKLGEL 426 (548)
T ss_dssp HHSCCCCCCC-CSCEEEEHHHHHHHHHHTTCCCCTTC-CC-----------------------------CHHHHHHHHHH
T ss_pred hcCCcccccc-CCcceeEHHHHHHHHHHcCCCCCCcc-cc-----------------------------chHHHHHHHHH
Confidence 222233444 799999999999876 465543211 11 11122223333
Q ss_pred hcCCCCCc-EEEEecCCCCCccc-cccCCCCCceeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhh
Q 008040 435 VEPKLVQP-TFVLDYPIEISPLA-KPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSE 512 (580)
Q Consensus 435 ve~~l~~P-~fV~dyP~~~~pfa-~~~~~~~~~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~ 512 (580)
+++.+..| +||+|||.+++||| +++++||++++|||||++|.||+|||+|+|||++|++||+++
T Consensus 427 i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G~Ei~nG~~rl~Dp~~~~~R~~~~-------------- 492 (548)
T 3i7f_A 427 IKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFLMKRCIEK-------------- 492 (548)
T ss_dssp HHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHHHHHHHHHHT--------------
T ss_pred HHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECCEEEeeCeeecCCHHHHHHHHHHc--------------
Confidence 44444445 56789999999995 678899999999999999999999999999999999998642
Q ss_pred hhhhHHhhhcCCccccccCCcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCC
Q 008040 513 KSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKI 578 (580)
Q Consensus 513 ~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 578 (580)
|.++. .|+|||+|++|||||||||||||||||||+||..||||||+|||.+.
T Consensus 493 ----------G~d~~----~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~ 544 (548)
T 3i7f_A 493 ----------GVDPA----TLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPI 544 (548)
T ss_dssp ----------TCCGG----GGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTT
T ss_pred ----------CCChH----HHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCC
Confidence 22232 36899999999999999999999999999999999999999999875
No 10
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=1.1e-100 Score=829.22 Aligned_cols=404 Identities=22% Similarity=0.345 Sum_probs=334.9
Q ss_pred CCCEEEEEEEEEeEecCC-CeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEe-----cCCceeE
Q 008040 110 ENDHVSVAGRVVARRAFG-KLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKR-----TEKGELS 183 (580)
Q Consensus 110 ~~~~V~v~GrV~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~-----t~~ge~e 183 (580)
.|++|+|+|||+++|.+| +++|++|||++|.||||++++. . +.|+.. + |+.||+|.|+|+|++ +++|++|
T Consensus 10 ~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~-~-~~~~~~-~-l~~~~~v~v~G~v~~~~~~~~~~g~~E 85 (435)
T 2xgt_A 10 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKL-C-QTYDAL-T-VNTECTVEIYGAIKEVPEGKEAPNGHE 85 (435)
T ss_dssp TTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGG-G-SSHHHH-H-CCTTCEEEEEEEEEECC------TTEE
T ss_pred CCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcc-h-hHHHHh-c-CCCCCEEEEEEEEEecCCCcCCCCcEE
Confidence 358999999999999997 6999999999999999998543 2 346544 4 699999999999998 5578999
Q ss_pred EEEeEEEEccccC----CCCCCCCCCCCChhhccccceeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeec
Q 008040 184 VLVNSFVILTKSL----LPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQG 259 (580)
Q Consensus 184 l~~~~i~vls~a~----~plP~~~~~l~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 259 (580)
|.|++++||+++. .|+|++ ..++++|+++||||| +||.++++|++||+|+++||+||.++||+||+||+|++
T Consensus 86 l~~~~~~vl~~~~p~~~~pl~~~---~~~~e~r~~~R~Ldl-r~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~ 161 (435)
T 2xgt_A 86 LIADFWKIIGNAPPGGIDNVLNE---EASVDKMLDNRHLVI-RGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQ 161 (435)
T ss_dssp EEEEEEEEEECCCTTHHHHHCC-----CCHHHHHHTHHHHT-TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEES
T ss_pred EEEEEEEEeecCCCccccccccc---CCCHHHHhhCeeeee-cCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEee
Confidence 9999999999853 244554 578999999999999 59999999999999999999999999999999999985
Q ss_pred c-CCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecccccCCCCC-CCCccceeeeeEeecCCHHHHH
Q 008040 260 A-AGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEFTTIEMYEAYSDYQSMM 337 (580)
Q Consensus 260 ~-~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~FR~E~~~~-rH~pEFtmlE~e~a~~d~~d~m 337 (580)
+ ++|+ +++|.+ +++|+++||+||||||||++| +|++||||||||||||++++ |||||||||||||+|+|++|+|
T Consensus 162 s~~eG~-~~~F~~--~~~g~~~~L~~SpqLylq~l~-~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m 237 (435)
T 2xgt_A 162 TQVEGG-STLFNL--DYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLM 237 (435)
T ss_dssp CCSSCT-TSCCEE--EETTEEEEECSCSHHHHHHHH-HHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHH
T ss_pred ccCCCc-hhceee--ccCCcccccCCChHHHHHHhh-hccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHH
Confidence 4 5553 568865 689999999999999999987 57999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCceee--cCceeecC---CCCcceeeHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCCCCc
Q 008040 338 NITEEIVTHCALAVNGKLTID--YQGVEICL---ERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENK 412 (580)
Q Consensus 338 ~l~E~li~~~~~~v~~~~~~~--~~~~~i~~---~~pf~rit~~eai~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 412 (580)
+++|+||+++++.+.+.+.+. +.+..+++ ..||+|+||.||++.+.+..+... .+.
T Consensus 238 ~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~~~~~--------------~~~----- 298 (435)
T 2xgt_A 238 EKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENE--------------FGN----- 298 (435)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTTCBCT--------------TSC-----
T ss_pred HHHHHHHHHHHHHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcCCCcc--------------ccc-----
Confidence 999999999999998765321 11222333 369999999999987754322110 000
Q ss_pred cccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCcc-ccccCCCCCceeEEEEEEcCE-eecccccccCCHHH
Q 008040 413 DKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPL-AKPHRRHAGLTERFELFICGR-EMANAFSELTDPLD 490 (580)
Q Consensus 413 ~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~pf-a~~~~~~~~~~~rFdL~i~G~-Ei~ng~~el~dp~~ 490 (580)
+..+|..+...++..+++.+.+|+||+|||.+++|| ++.+++||++++|||||++|+ ||+|||+|+|||++
T Consensus 299 -------~~~~g~~l~~~~e~~l~~~~~~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~ 371 (435)
T 2xgt_A 299 -------TFTYGEDIAEAAERFMTDTINKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDE 371 (435)
T ss_dssp -------BCCTTSCCCHHHHHHHHHHHTSCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHH
T ss_pred -------ccchhhHHHHHHHHHHHHhcCCcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHH
Confidence 001133344445555555557899999999999998 566778899999999999996 99999999999999
Q ss_pred HHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccc
Q 008040 491 QRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDV 570 (580)
Q Consensus 491 q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdv 570 (580)
|+++|++. |.++. ..+|||+|++||||||||||||||||||+|||.+|||||
T Consensus 372 q~~r~~~~------------------------g~~~~----~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdv 423 (435)
T 2xgt_A 372 LSKAFKNV------------------------EIDPK----PYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDV 423 (435)
T ss_dssp HHHHHHHH------------------------TCCCG----GGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred HHHHHHHc------------------------CCCHH----HHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhE
Confidence 99999753 22222 237999999999999999999999999999999999999
Q ss_pred ccCCcCCCC
Q 008040 571 IAFPILKIQ 579 (580)
Q Consensus 571 i~FP~~~~~ 579 (580)
|+||++++.
T Consensus 424 i~FPr~~~~ 432 (435)
T 2xgt_A 424 CLYPRFVGR 432 (435)
T ss_dssp SSSCCBTTB
T ss_pred ecccCCcCC
Confidence 999999863
No 11
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=9e-100 Score=819.62 Aligned_cols=413 Identities=24% Similarity=0.413 Sum_probs=353.9
Q ss_pred cCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCc
Q 008040 87 RTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGD 166 (580)
Q Consensus 87 ~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd 166 (580)
++|+|+++.+.+ .|++|+|+|||+++|.+||++|++|||++|.||||++++. +.|+.+++ |+.||
T Consensus 3 ~~~~~~~l~~~~-----------~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~---~~~~~~~~-l~~~~ 67 (429)
T 1wyd_A 3 RSHFIADVTPEY-----------DGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNS---SAFGISQE-LTQES 67 (429)
T ss_dssp CSSCTTTCCGGG-----------TTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTS---TTHHHHTT-CCTTC
T ss_pred eEEEHHHhhHHh-----------CCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh---HHHHHHHh-CCCCC
Confidence 577888776533 2478999999999999999999999999999999998763 46777765 69999
Q ss_pred EEEEEeEEEecCCc--eeEEEEeEEEEccccCCCCCC-CCCC-CCChhhccccceeeeecCHHHHHHHHHHHHHHHHHHH
Q 008040 167 ILGVSGSMKRTEKG--ELSVLVNSFVILTKSLLPLPD-KYHG-LTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRK 242 (580)
Q Consensus 167 ~v~v~G~v~~t~~g--e~el~~~~i~vls~a~~plP~-~~~~-l~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~~~iR~ 242 (580)
+|.|+|+|+++++| ++||.|++++|||+|+.|+|. ++++ ..++++|+++|||||| ||.++++|++||+|+++||+
T Consensus 68 ~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~ 146 (429)
T 1wyd_A 68 VIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLR-RQEMQAVIKIQSLALKAFRE 146 (429)
T ss_dssp EEEEEEEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHT-SHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceecc-CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999864 999999999999999888984 4444 4789999999999997 89999999999999999999
Q ss_pred HHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecccccCCCCC-CCCccc
Q 008040 243 TVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEF 321 (580)
Q Consensus 243 fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~FR~E~~~~-rH~pEF 321 (580)
||.++||+||+||+|+++.+|+++++|.| +++|.++||+||||+|+|+ |++|++||||||||||||++++ ||+|||
T Consensus 147 ff~~~gF~eV~TP~l~~~~~e~~~~~f~~--~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEF 223 (429)
T 1wyd_A 147 TLYKEGFIEIFTPKIIASATEGGAQLFPV--IYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEF 223 (429)
T ss_dssp HHHHTTCEECCCCSEESSCSSTTCCCCEE--EETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEE
T ss_pred HHhhCCCEEEECCEEEeeCCCCCceeEEE--ecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCcccccccee
Confidence 99999999999999998766666789998 5789999999999999999 7889999999999999999987 999999
Q ss_pred eeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCceeecC-CCCcceeeHHHHHHHHh--CCCCCCCCCCHHH
Q 008040 322 TTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKL--TIDYQGVEICL-ERPWRRETMHNLVKEAT--GIDFNELGNDLKV 396 (580)
Q Consensus 322 tmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~--~~~~~~~~i~~-~~pf~rit~~eai~~~~--g~~~~~~~~~~~~ 396 (580)
||||+|++|.|++|+|+++|+|++++++.+.+++ .+.+.+..+++ +.||+|+||.||++.+. |.++.
T Consensus 224 tqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~g~~~~-------- 295 (429)
T 1wyd_A 224 ISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKGYNIK-------- 295 (429)
T ss_dssp EEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSSCCCC--------
T ss_pred eEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccccccCCCCccEEEHHHHHHHHHhcCCCcc--------
Confidence 9999999999999999999999999999988654 34555555553 67999999999999884 33221
Q ss_pred HHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCcc-ccccCCCCCceeEEEEEEcC
Q 008040 397 AKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPL-AKPHRRHAGLTERFELFICG 475 (580)
Q Consensus 397 ~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~pf-a~~~~~~~~~~~rFdL~i~G 475 (580)
+|. ++ ....++++.+. +++ +|+||+|||.+++|| ++++++||++++|||||++|
T Consensus 296 --------~~~-------~l---~~~~e~~l~~~----~~~---~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G 350 (429)
T 1wyd_A 296 --------FGD-------DI---GTPELRILNEE----LKE---DLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKF 350 (429)
T ss_dssp --------TTS-------CC---CHHHHHHHHHH----HCC---SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETT
T ss_pred --------cCc-------cc---CcHHHHHHHHH----hcc---CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECC
Confidence 111 00 00113333332 322 799999999999999 67888899999999999999
Q ss_pred EeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHHHHHHHhcCCCCccceeccHH
Q 008040 476 REMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGID 555 (580)
Q Consensus 476 ~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~GiGiD 555 (580)
+||+|||+|+|||++|+++|+++ +.+.+ .++|||+|++||||||||||||||
T Consensus 351 ~Ei~~G~~r~~d~~~q~~rf~~~-----------------------g~~~~-----~~~~yl~al~yG~PP~~G~glGiD 402 (429)
T 1wyd_A 351 LEIVSGSTRNHKREVLEEALKKK-----------------------GLKPE-----SFEFFLKWFDYGMPPHAGFGMGLA 402 (429)
T ss_dssp EEEEEEEEBCCCHHHHHHHHHHT-----------------------TCCGG-----GGHHHHGGGGSCCCCEEEEEEEHH
T ss_pred EEEEeCeeeeCCHHHHHHHHHHc-----------------------CCChH-----HHHHHHHHHhcCCCCceEEEEcHH
Confidence 99999999999999999999864 12223 358999999999999999999999
Q ss_pred HHHHHHcCCCCccccccCCcCCCC
Q 008040 556 RLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 556 RLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
||||+|||.+||||||+||++++.
T Consensus 403 RLvmll~g~~~Irdvi~FP~~~~~ 426 (429)
T 1wyd_A 403 RLMVMLTGIQSVKEIVPFPRDKKR 426 (429)
T ss_dssp HHHHHHHCCCCGGGTSSSCCBTTB
T ss_pred HHHHHHcCCCcHHhEEecCCCCCC
Confidence 999999999999999999999863
No 12
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=6.1e-99 Score=824.85 Aligned_cols=408 Identities=23% Similarity=0.404 Sum_probs=346.0
Q ss_pred CCEEEEEEEEEeEecCCCe-EEEEEeeCCeeEEEEEecC--c-cChHHHHhhhcccCCCcEEEEEeEEEecC-------C
Q 008040 111 NDHVSVAGRVVARRAFGKL-AFLTLRDDSGTIQLYCEKE--R-LLSDQFDQLKVFVDIGDILGVSGSMKRTE-------K 179 (580)
Q Consensus 111 ~~~V~v~GrV~~~R~~gk~-~F~~LrD~sg~iQvv~~~~--~-~~~~~~~~~~~~l~~gd~v~v~G~v~~t~-------~ 179 (580)
|++|+|+|||+++|.+||+ +|++|||++|.||||++++ . ++++.|+.+++ |+.||+|.|+|+|.+++ +
T Consensus 36 g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~-l~~e~~V~V~G~v~~~~~~~~~~~~ 114 (487)
T 1eov_A 36 DKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGS-LNLESIVLVRGIVKKVDEPIKSATV 114 (487)
T ss_dssp TCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTT-CCTTCEEEEEEEEEECSSCCTTSSE
T ss_pred CCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhc-CCCCCEEEEEEEEEeCCCCCcCCCC
Confidence 5889999999999999997 9999999999999999876 2 45667877766 69999999999999987 4
Q ss_pred ceeEEEEeEEEEccccCCCCCCC------------CCCC--CChhhccccceeeeecCHHHHHHHHHHHHHHHHHHHHHH
Q 008040 180 GELSVLVNSFVILTKSLLPLPDK------------YHGL--TDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVE 245 (580)
Q Consensus 180 ge~el~~~~i~vls~a~~plP~~------------~~~l--~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~ 245 (580)
|++||.|++++|||+|..|+|.. ++++ .++++|+++|||||| +|.++++|++||.|+++||+||.
T Consensus 115 g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr-~~~~~~~~~~rs~i~~~ir~~~~ 193 (487)
T 1eov_A 115 QNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLA 193 (487)
T ss_dssp EEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999888862 3444 789999999999997 89999999999999999999999
Q ss_pred hCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecccccCCCCC-CCCccceee
Q 008040 246 SLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEFTTI 324 (580)
Q Consensus 246 ~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~FR~E~~~~-rH~pEFtml 324 (580)
++||+||+||+|+++.+|++|++|.|+ ++|.++||+||||||+|+||++|++||||||||||||++++ ||+||||||
T Consensus 194 ~~gF~EV~TPil~~~~~~~ga~~f~~~--~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~l 271 (487)
T 1eov_A 194 TKKFTEVHTPKLLGAPSEGGSSVFEVT--YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGL 271 (487)
T ss_dssp HTTCEECCCCSEESSCSSSSSCCCEEE--ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEE
T ss_pred hCCcEEEeCCEEEEecCCCCcccceec--cCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhh
Confidence 999999999999988777788999986 47999999999999999999999999999999999999985 999999999
Q ss_pred eeEeecC-CHHHHHHHHHHHHHHHHHHHhCCcee-------ecCceeecCCC--CcceeeHHHHHHHH--hCCCCCCCCC
Q 008040 325 EMYEAYS-DYQSMMNITEEIVTHCALAVNGKLTI-------DYQGVEICLER--PWRRETMHNLVKEA--TGIDFNELGN 392 (580)
Q Consensus 325 E~e~a~~-d~~d~m~l~E~li~~~~~~v~~~~~~-------~~~~~~i~~~~--pf~rit~~eai~~~--~g~~~~~~~~ 392 (580)
||||+|. |++|+|+++|+||+++++.+.+.+.. .+....+++.. ||+|++|.||++.+ .|+++....
T Consensus 272 e~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~- 350 (487)
T 1eov_A 272 DMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFE- 350 (487)
T ss_dssp EEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTC-
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCccc-
Confidence 9999997 69999999999999999988764421 12233444444 99999999999644 454432211
Q ss_pred CHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCC-CCcEEEEecCCCCCcc-ccccCCCCCceeEEE
Q 008040 393 DLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKL-VQPTFVLDYPIEISPL-AKPHRRHAGLTERFE 470 (580)
Q Consensus 393 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l-~~P~fV~dyP~~~~pf-a~~~~~~~~~~~rFd 470 (580)
++.. ...+.+.++.+ +.+ ..|+||+|||.+++|| ++++++||++++|||
T Consensus 351 d~~~-------------------------~~e~~l~~~~~----~~~~~~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fD 401 (487)
T 1eov_A 351 DLST-------------------------ENEKFLGKLVR----DKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYD 401 (487)
T ss_dssp CCCH-------------------------HHHHHHHHHHH----HHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEE
T ss_pred chhh-------------------------HHHHHHHHHHH----HHhCCCCEEEECCccccChhhcCcCCCCCCeEEEEE
Confidence 1100 01222222222 222 2478999999999998 689999999999999
Q ss_pred EEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHHHHHHHhcCCCCccce
Q 008040 471 LFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGM 550 (580)
Q Consensus 471 L~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~ 550 (580)
||++|+||+|||+|+|||++|+++|++. |.++..+ .++|||+|++|||||||||
T Consensus 402 L~~~G~Ei~~G~~rl~d~~~q~~r~~~~------------------------g~~~~~~--~~~~yl~al~yG~PPhgG~ 455 (487)
T 1eov_A 402 FFMRGEEILSGAQRIHDHALLQERMKAH------------------------GLSPEDP--GLKDYCDGFSYGCPPHAGG 455 (487)
T ss_dssp EEETTEEEEEEEEBCCCHHHHHHHHHHT------------------------TCCTTST--TTHHHHHHHTTCCCCEEEE
T ss_pred EEeCCEEEEeeEEecCCHHHHHHHHHHc------------------------CCChhhh--hHHHHHHHHhcCCCCCeEE
Confidence 9999999999999999999999998642 2233322 5789999999999999999
Q ss_pred eccHHHHHHHHcCCCCccccccCCcCCC
Q 008040 551 GLGIDRLVMLLTNSASIRDVIAFPILKI 578 (580)
Q Consensus 551 GiGiDRLvMlltg~~sIrdvi~FP~~~~ 578 (580)
|||||||||+|||.+||||||+||+.+.
T Consensus 456 glGiDRLvmll~g~~~IRdVi~FPr~~~ 483 (487)
T 1eov_A 456 GIGLERVVMFYLDLKNIRRASLFPRDPK 483 (487)
T ss_dssp EEEHHHHHHHHTTCSSGGGGCSSCCBTT
T ss_pred EEhHHHHHHHHcCCCcHHheeecCCCCC
Confidence 9999999999999999999999999875
No 13
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=2.1e-99 Score=818.40 Aligned_cols=415 Identities=22% Similarity=0.304 Sum_probs=359.0
Q ss_pred cCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCc
Q 008040 87 RTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGD 166 (580)
Q Consensus 87 ~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd 166 (580)
++|+|+++.+.+ .|++|+|+|||+++|.+||++|++|||++|.||||++++.++++.|+.+++ |+.||
T Consensus 3 ~~~~~~~l~~~~-----------~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~-l~~~~ 70 (434)
T 1x54_A 3 EKVYCQEVKPEL-----------DGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKK-LGRES 70 (434)
T ss_dssp CCCCGGGCCGGG-----------TTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHT-CCTTC
T ss_pred eEEEHHHhhHHh-----------CCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhc-CCCCC
Confidence 578888886533 247899999999999999999999999999999999876666678888866 69999
Q ss_pred EEEEEeEEEecCCc--eeEEEEeEEEEccccCCCCCC--CCCCCCChhhccccceeeeecCHHHHHHHHHHHHHHHHHHH
Q 008040 167 ILGVSGSMKRTEKG--ELSVLVNSFVILTKSLLPLPD--KYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRK 242 (580)
Q Consensus 167 ~v~v~G~v~~t~~g--e~el~~~~i~vls~a~~plP~--~~~~l~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~~~iR~ 242 (580)
+|.|+|+|.+++++ ++||.|++++|||+| .|+|. ..+ ..++++|+++|||||| ||.+++++++||+|+++||+
T Consensus 71 ~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~-~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~ 147 (434)
T 1x54_A 71 SVIVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPE-QASPELLLDYRHLHIR-TPKASAIMKVKETLIMAARE 147 (434)
T ss_dssp EEEEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGG-GSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCccccc-CCCHHHhhhceeeeec-CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999865 999999999999999 88996 322 3789999999999997 99999999999999999999
Q ss_pred HHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecccccCCCCC-CCCccc
Q 008040 243 TVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEF 321 (580)
Q Consensus 243 fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~FR~E~~~~-rH~pEF 321 (580)
||.++||+||+||+|+++.+|+++++|.| +++|.++|||||||+|+|+ +++|++|||+||||||||++++ ||+|||
T Consensus 148 ~f~~~gF~eVeTP~l~~~~~e~~~~~f~~--~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEF 224 (434)
T 1x54_A 148 WLLKDGWHEVFPPILVTGAVEGGATLFKL--KYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEF 224 (434)
T ss_dssp HHHHTTCEECCCCSEESCCSSCGGGCCEE--EETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEE
T ss_pred HHHHCCCEEEeCcEEEeecCCCCceeEEE--eecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEE
Confidence 99999999999999998776667789988 5789999999999999999 7889999999999999999987 999999
Q ss_pred eeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCceeec----CCCCcceeeHHHHHHHHhCCCCCCCCCCHH
Q 008040 322 TTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKL--TIDYQGVEIC----LERPWRRETMHNLVKEATGIDFNELGNDLK 395 (580)
Q Consensus 322 tmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~--~~~~~~~~i~----~~~pf~rit~~eai~~~~g~~~~~~~~~~~ 395 (580)
||||+|++|.|++|+|+++|+|++++++.+.+.+ .+.+.+..++ ++.||+|+||.||++.+.+..+. ..
T Consensus 225 tqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~g~~-~~---- 299 (434)
T 1x54_A 225 WHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKGVN-VE---- 299 (434)
T ss_dssp EEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHTTCC-CC----
T ss_pred EEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHhcCCC-cc----
Confidence 9999999999999999999999999999988754 3555555443 35799999999999987522111 00
Q ss_pred HHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCcc-ccccCCCCCceeEEEEEEc
Q 008040 396 VAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPL-AKPHRRHAGLTERFELFIC 474 (580)
Q Consensus 396 ~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~pf-a~~~~~~~~~~~rFdL~i~ 474 (580)
+| ..++..++..+...+.+|+||+|||.+++|| ++++++||++++|||||++
T Consensus 300 ---------~~------------------~dl~~~~e~~l~~~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~ 352 (434)
T 1x54_A 300 ---------WG------------------DDLGADEERVLTEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAP 352 (434)
T ss_dssp ---------TT------------------CCCCHHHHHHHHTTCSSCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEET
T ss_pred ---------cC------------------CccChHHHHHHHHHhCCcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEEC
Confidence 11 1112234455566667899999999999999 6788899999999999999
Q ss_pred -CE-eecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHHHHHHHhcCCCCccceec
Q 008040 475 -GR-EMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGL 552 (580)
Q Consensus 475 -G~-Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~Gi 552 (580)
|+ ||+|||+|+|||++|+++|+++ +.+.+ .++|||+|++|||||||||||
T Consensus 353 ~G~gEi~~G~~r~~d~~~q~~rf~~~-----------------------g~~~~-----~~~~yl~al~yG~PP~~G~gl 404 (434)
T 1x54_A 353 EGYGEIIGGSQREDDYDKLLNRILEE-----------------------GMDPK-----DYEWYLDLRRYGSVPHSGFGL 404 (434)
T ss_dssp TTTEEEEEEEEBCCCHHHHHHHHHHT-----------------------TCCGG-----GGHHHHHTTTSSCCCEEEEEE
T ss_pred CCceEEecCeEeeCCHHHHHHHHHHc-----------------------CCChH-----HHHHHHHHHhcCCCCceEEEE
Confidence 98 9999999999999999999864 12223 358999999999999999999
Q ss_pred cHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 553 GIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 553 GiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
|||||||+|||.+||||||+||++++.
T Consensus 405 GiDRLvmll~g~~~Irdvi~FP~~~~~ 431 (434)
T 1x54_A 405 GVERLVAWVLKLDHIRWAALFPRTPAR 431 (434)
T ss_dssp EHHHHHHHHTTCSSGGGGSSSCCBTTB
T ss_pred cHHHHHHHHcCCCcHHhEEEccCcCCC
Confidence 999999999999999999999999863
No 14
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=2.3e-98 Score=807.09 Aligned_cols=395 Identities=23% Similarity=0.330 Sum_probs=291.7
Q ss_pred CCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccC-CCcEEEEEeEEEecCCc--eeEEEEe
Q 008040 111 NDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVD-IGDILGVSGSMKRTEKG--ELSVLVN 187 (580)
Q Consensus 111 ~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~-~gd~v~v~G~v~~t~~g--e~el~~~ 187 (580)
|++|+|+|||+++|.+||++|++|||++|.||||+++ ++ |+ .||+|.|+|+|.+++++ ++||.|+
T Consensus 13 ~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~-----------~~-l~~~~~~v~v~G~v~~~~~~~~~~el~~~ 80 (422)
T 1n9w_A 13 GQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG-----------LK-LPLPESALRVRGLVVENAKAPGGLEVQAK 80 (422)
T ss_dssp TSEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES-----------CC-CCCTTCEEEEEEEEEECTTSTTSEEEEEE
T ss_pred CCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc-----------cc-cCCCCCEEEEEEEEEecCCCCccEEEEEe
Confidence 4789999999999999999999999999999999975 23 69 99999999999999864 9999999
Q ss_pred EEEEccccCCCCCC-CCC--CCCChhhccccceeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeeccCCCC
Q 008040 188 SFVILTKSLLPLPD-KYH--GLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGA 264 (580)
Q Consensus 188 ~i~vls~a~~plP~-~~~--~l~d~e~r~r~R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga 264 (580)
+++|||+|+.|+|. +++ ++.++++|+++|||||| ||.+++++++||+|+++||+||.++||+||+||+|+++.+|+
T Consensus 81 ~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~ 159 (422)
T 1n9w_A 81 EVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEG 159 (422)
T ss_dssp EEEEEECCCSCCC-----------------CHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC---------
T ss_pred EEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCC
Confidence 99999999888884 333 56889999999999997 999999999999999999999999999999999999876666
Q ss_pred CCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecccccCCCCC-CCCccceeeeeEeecC-CHHHHHHHHHH
Q 008040 265 EARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLST-RHNPEFTTIEMYEAYS-DYQSMMNITEE 342 (580)
Q Consensus 265 ~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~FR~E~~~~-rH~pEFtmlE~e~a~~-d~~d~m~l~E~ 342 (580)
++++|.| +++|.++||+||||+|+|+|+ +|++||||||||||||++++ ||+|||||||+|++|. |++|+|+++|+
T Consensus 160 ~~~~f~~--~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ 236 (422)
T 1n9w_A 160 GSGLFGV--DYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEA 236 (422)
T ss_dssp ---------------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHH
T ss_pred CceeEEE--eeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHH
Confidence 6789987 578899999999999999987 88999999999999999987 9999999999999999 99999999999
Q ss_pred HHHHHHHHHhCCc--eeecCceeecCC-CCcceeeHHHHHHHHhCCC-CCCCCCCHHHHHHHHHHHcCCCCCCccccccC
Q 008040 343 IVTHCALAVNGKL--TIDYQGVEICLE-RPWRRETMHNLVKEATGID-FNELGNDLKVAKETTLRALGDGLENKDKFVIE 418 (580)
Q Consensus 343 li~~~~~~v~~~~--~~~~~~~~i~~~-~pf~rit~~eai~~~~g~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 418 (580)
||+++++.+.+.+ .+.+.+..+++. .||+|+||.||++.+.+.. +. +|. ++
T Consensus 237 ll~~l~~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~~~~~~----------------~~~-------dl-- 291 (422)
T 1n9w_A 237 LLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYP----------------VGQ-------DL-- 291 (422)
T ss_dssp HHHHHHHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTSCCC----------------CCS-------SC--
T ss_pred HHHHHHHHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHhcCCcc----------------ccc-------cc--
Confidence 9999999987654 455666555544 7999999999999884321 11 111 00
Q ss_pred CCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCccccccCCCCCceeEEEEEEcCEeecccccccCCHHHHHHHHHHH
Q 008040 419 SSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQ 498 (580)
Q Consensus 419 ~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~pfa~~~~~~~~~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~ 498 (580)
....++++.+.++..+. .+|+||+|||.+++|||+++++| ++++|||||++|+||+|||+|+|||++|+++|+++
T Consensus 292 -~~~~e~~l~~~~~~~~~---~~p~fv~d~P~~~~pf~~~~~~d-~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~ 366 (422)
T 1n9w_A 292 -SEEAERLLGEYAKERWG---SDWLFVTRYPRSVRPFYTYPEED-GTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAK 366 (422)
T ss_dssp -CHHHHHHHHHHHHHHTC---CSEEEEECCBGGGSCTTBCBCTT-SBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHhhhC---CceEEEECCChhhCcCcCCCCCC-CEEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHc
Confidence 00123445444443222 26999999999999999887766 89999999999999999999999999999999864
Q ss_pred HHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCC
Q 008040 499 VRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKI 578 (580)
Q Consensus 499 ~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 578 (580)
+.+.+ .++|||+|++||||||||||||||||||+|||.+||||||+||++++
T Consensus 367 -----------------------g~~~~-----~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~ 418 (422)
T 1n9w_A 367 -----------------------GMDPE-----AFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRH 418 (422)
T ss_dssp -----------------------TCCGG-----GGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC----
T ss_pred -----------------------CCCHH-----HHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCC
Confidence 12233 35899999999999999999999999999999999999999999986
Q ss_pred C
Q 008040 579 Q 579 (580)
Q Consensus 579 ~ 579 (580)
.
T Consensus 419 ~ 419 (422)
T 1n9w_A 419 R 419 (422)
T ss_dssp -
T ss_pred C
Confidence 3
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-94 Score=797.99 Aligned_cols=437 Identities=24% Similarity=0.400 Sum_probs=356.7
Q ss_pred CCCccCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhccc
Q 008040 83 YKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFV 162 (580)
Q Consensus 83 ~~~~~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l 162 (580)
+-+.|||+|+++++.+ . |++|+|+|||+++|.+ +|++|||++|.||||++++..+++.|+.+++ |
T Consensus 7 ~~~~rt~~~~~l~~~~----~-------g~~V~l~GwV~~~R~~---~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~-l 71 (617)
T 4ah6_A 7 SFVVRTNTCGELRSSH----L-------GQEVTLCGWIQYRRQN---TFLVLRDFDGLVQVIIPQDESAASVKKILCE-A 71 (617)
T ss_dssp CSSSCSSCGGGCCGGG----T-------TCEEEEEEEECCCCTT---TEEEEECSSCEEEEECCCSSSSHHHHHHHHH-C
T ss_pred ccccCceEHHHhHHHh----C-------CCEEEEEEEeeeecCe---EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhc-C
Confidence 3457999999998765 2 4789999999999975 5999999999999999987666678888877 5
Q ss_pred CCCcEEEEEeEEEe---------cCCceeEEEEeEEEEccccCCCCCCC--CCCCCChhhccccceeeeecCHHHHHHHH
Q 008040 163 DIGDILGVSGSMKR---------TEKGELSVLVNSFVILTKSLLPLPDK--YHGLTDVDKRYRQRYVDMISKPEVADVFR 231 (580)
Q Consensus 163 ~~gd~v~v~G~v~~---------t~~ge~el~~~~i~vls~a~~plP~~--~~~l~d~e~r~r~R~ldl~~~~~~~~~~~ 231 (580)
+.||+|.|+|+|++ +++|++||.|++|+|||+|. ++|.+ .++..++++||++|||||| ++.++++|+
T Consensus 72 ~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR-~~~~~~~lr 149 (617)
T 4ah6_A 72 PVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLR-SFQMQYNLR 149 (617)
T ss_dssp CSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTT-SHHHHHHHH
T ss_pred CCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeec-chHHHHHHH
Confidence 99999999999986 35789999999999999998 88864 5667889999999999997 589999999
Q ss_pred HHHHHHHHHHHHHH-hCCCeeecCceee-ccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecccc
Q 008040 232 KRAKIVSEIRKTVE-SLGFVEVETPVLQ-GAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFR 309 (580)
Q Consensus 232 ~Rs~i~~~iR~fl~-~~gF~EVeTPiL~-~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~FR 309 (580)
+||+|+++||+||. ++||+||+||+|+ ++++| |++|.|+++..+..+||+||||||||+||++|++||||||||||
T Consensus 150 ~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~G--A~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR 227 (617)
T 4ah6_A 150 LRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGG--AKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYR 227 (617)
T ss_dssp HHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSS--SCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCC--CcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhhee
Confidence 99999999999996 7999999999998 46777 46899999989999999999999999999999999999999999
Q ss_pred cCCCCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCceeecCCCCcceeeHHHHHHHHhCCCCCC
Q 008040 310 NEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNE 389 (580)
Q Consensus 310 ~E~~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~ 389 (580)
||+++++||||||||||||+|.|++|+|+++|+||+++++.+. .++..||+|+||.||+..|. .|-++
T Consensus 228 ~E~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~-----------~~~~~pf~r~ty~eA~~~yg-sDkPD 295 (617)
T 4ah6_A 228 DEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDK-----------DPVVVPFPTMTFAEVLATYG-TDKPD 295 (617)
T ss_dssp CCSSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSS-----------CCCCSSCCEEEHHHHHHHTS-SSSCC
T ss_pred cccCCCCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhc-----------CccCCCceEeEHHHHHHHHc-CCCCc
Confidence 9999999999999999999999999999999999999876432 25678999999999999983 22111
Q ss_pred C---------C------------------------------------CCHHHHHHHHHHHcCCCC-------CCcccc-c
Q 008040 390 L---------G------------------------------------NDLKVAKETTLRALGDGL-------ENKDKF-V 416 (580)
Q Consensus 390 ~---------~------------------------------------~~~~~~~~~~~~~~g~~~-------~~~~~~-~ 416 (580)
+ + ..++.+.+.++...|... +..|.. +
T Consensus 296 lR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I 375 (617)
T 4ah6_A 296 TRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPV 375 (617)
T ss_dssp SSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTT
T ss_pred cccCcccccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccch
Confidence 1 0 012233333332112110 000000 0
Q ss_pred -------------------------------cCCCCcHHhHHHHHHHHHh-------cCCCCCcEEEEecCCC-------
Q 008040 417 -------------------------------IESSPSVGNLLNEVFEIVV-------EPKLVQPTFVLDYPIE------- 451 (580)
Q Consensus 417 -------------------------------~~~~~~lg~~l~~~~~~~v-------e~~l~~P~fV~dyP~~------- 451 (580)
...+..+|.+..++.+.+. .+....++||+|||..
T Consensus 376 ~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~ 455 (617)
T 4ah6_A 376 ANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENP 455 (617)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSS
T ss_pred hhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccc
Confidence 0012335666666666552 2333478999999983
Q ss_pred ------CCccccccCCCCC---------ceeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhh
Q 008040 452 ------ISPLAKPHRRHAG---------LTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSA 516 (580)
Q Consensus 452 ------~~pfa~~~~~~~~---------~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~ 516 (580)
+.||++|+++|.. .+++|||++||.||+|||.|+|||+.|+++|++++..
T Consensus 456 ~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~--------------- 520 (617)
T 4ah6_A 456 RELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKE--------------- 520 (617)
T ss_dssp SSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSS---------------
T ss_pred cceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhcc---------------
Confidence 5799999876532 4799999999999999999999999999999865311
Q ss_pred HHhhhcCCccccccCCcHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCC
Q 008040 517 QEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILK 577 (580)
Q Consensus 517 ~~~~~~~~~e~~~~~~d~~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~ 577 (580)
++ . .++|||+||+||+|||||||+|+|||||+|||.+||||||+||+.-
T Consensus 521 --------~~--~--~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdvi~fP~~~ 569 (617)
T 4ah6_A 521 --------DV--K--MLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSF 569 (617)
T ss_dssp --------TH--H--HHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGSSSSCCCS
T ss_pred --------ch--h--hHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheEEecCCCC
Confidence 11 1 5789999999999999999999999999999999999999999954
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=2.2e-83 Score=673.74 Aligned_cols=306 Identities=32% Similarity=0.509 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeecCceeecc-CCCCCCCceeeccC----CCCeeEEEEecHHHHHHHHHhccCCc
Q 008040 226 VADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA-AGGAEARPFVTYHN----SLGRDLYLRIATELHLKRMLIGGFEK 300 (580)
Q Consensus 226 ~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~-~~Ga~a~pF~t~~~----~~~~~~yL~~Spql~lk~llv~g~~r 300 (580)
.+++|++||+|+++||+||.++||+||+||+|+++ ++|++++||.|.++ ..+.++||+||||||||+|||+|++|
T Consensus 32 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~r 111 (345)
T 3a5y_A 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGP 111 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCc
Confidence 78999999999999999999999999999999965 56688999998643 33489999999999999999999999
Q ss_pred eeEEecccccCCCCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCceeecCCCCcceeeHHHHHH
Q 008040 301 IYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVK 380 (580)
Q Consensus 301 VfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~~i~~~~pf~rit~~eai~ 380 (580)
|||||||||||++++||||||||||+||+|.|++|+|+++|+||+++++ ..||+|+||.||++
T Consensus 112 vyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-----------------~~~~~rity~ea~~ 174 (345)
T 3a5y_A 112 VFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-----------------CPAAESLSYQQAFL 174 (345)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-----------------CCCCEEEEHHHHHH
T ss_pred EEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-----------------CCCCcEeeHHHHHH
Confidence 9999999999999889999999999999999999999999999999986 12899999999999
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCC--CCcEEEEecCCCCCccccc
Q 008040 381 EATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKL--VQPTFVLDYPIEISPLAKP 458 (580)
Q Consensus 381 ~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l--~~P~fV~dyP~~~~pfa~~ 458 (580)
+++|+|.... +.+++.+.+++ +|+. | +......++.+++.++...||+++ .+|+||+|||.+++||++.
T Consensus 175 ~~~g~d~~~~--~~~~l~~~~~~-~g~~----~--~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~~~~ 245 (345)
T 3a5y_A 175 RYLEIDPLSA--DKTQLREVAAK-LDLS----N--VADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQI 245 (345)
T ss_dssp HHTCCCTTCC--C-------------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTTBCB
T ss_pred HHhCCCCCCC--CHHHHHHHHHH-cCCc----c--cCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChhhCC
Confidence 9999886543 45566666665 6652 0 111101347788889999999998 5899999999999999999
Q ss_pred cCCCCCceeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHHHHH
Q 008040 459 HRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVT 538 (580)
Q Consensus 459 ~~~~~~~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~yl~ 538 (580)
++++|.+++|||||++|+||+|||+|+|||++|+++|+++... ++.++.+..+ .|+|||+
T Consensus 246 ~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~------------------~~~~g~~~~~--~d~~yl~ 305 (345)
T 3a5y_A 246 STEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRK------------------RAARGLPQHP--IDQNLIE 305 (345)
T ss_dssp CSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHH------------------HHHTTCCCCC--CCHHHHH
T ss_pred CCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHH------------------HHhcCCChhh--HHHHHHH
Confidence 9999999999999999999999999999999999999998665 2333344444 7899999
Q ss_pred HHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCC
Q 008040 539 ALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILK 577 (580)
Q Consensus 539 al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~ 577 (580)
|++||+|||||||||||||||+|||.+||||||+||+++
T Consensus 306 al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 306 ALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 999999999999999999999999999999999999986
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=2e-67 Score=543.04 Aligned_cols=275 Identities=18% Similarity=0.263 Sum_probs=238.0
Q ss_pred ccceeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeecc--------CCCCCCCceeeccCCCCeeEEEEec
Q 008040 214 RQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA--------AGGAEARPFVTYHNSLGRDLYLRIA 285 (580)
Q Consensus 214 r~R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~--------~~Ga~a~pF~t~~~~~~~~~yL~~S 285 (580)
.|||+||| |+ +++++++|++|++.||+||.++||+||+||+|+++ .+++ +++|.+. ++|.++||++|
T Consensus 1 ~~r~l~lr-~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~--~~~~~~~L~~S 75 (294)
T 1nnh_A 1 MNAVEIIS-RE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVE--IYGVKMRLTHS 75 (294)
T ss_dssp -CHHHHHT-SC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEE--ETTEEEEECSC
T ss_pred CchHHhhh-cc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEE--cCCCCEEeccC
Confidence 37999995 78 99999999999999999999999999999999988 4544 8999874 67899999999
Q ss_pred HHHHHHHHHhccCCceeEEecccccCC--CCC-CCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCce
Q 008040 286 TELHLKRMLIGGFEKIYEIGRIFRNEG--LST-RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGV 362 (580)
Q Consensus 286 pql~lk~llv~g~~rVfeIg~~FR~E~--~~~-rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~ 362 (580)
||+|+|+++++|++|||+||||||||+ +++ ||+|||||||+|++|.|++|+|+++|+|+++++..+.+.. +.
T Consensus 76 pe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~-----~~ 150 (294)
T 1nnh_A 76 MILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT-----GR 150 (294)
T ss_dssp SHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH-----SS
T ss_pred hHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh-----cc
Confidence 999999999999999999999999999 885 9999999999999999999999999999999998775411 12
Q ss_pred eec-CCCCcceeeHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCC
Q 008040 363 EIC-LERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQ 441 (580)
Q Consensus 363 ~i~-~~~pf~rit~~eai~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~ 441 (580)
+++ +.. |+|++|.||++++ |. +. .+ .. .+.+
T Consensus 151 ~i~~~~~-~~r~~y~ea~~~~-g~---------~~---------------------------er------~~----~~~~ 182 (294)
T 1nnh_A 151 EFPKTKR-FEVFEYSEVLEEF-GS---------DE---------------------------KA------SQ----EMEE 182 (294)
T ss_dssp CCCCCSS-CEEEEHHHHHHHT-SS---------HH---------------------------HH------HH----HCSS
T ss_pred ccccCCC-ceEeEHHHHHHHh-CC---------hH---------------------------hh------hh----hcCC
Confidence 233 444 9999999999754 21 00 01 01 1368
Q ss_pred cEEEEecCCCCCccccccCCCCCceeEEEEEEc-CE-eecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHh
Q 008040 442 PTFVLDYPIEISPLAKPHRRHAGLTERFELFIC-GR-EMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEK 519 (580)
Q Consensus 442 P~fV~dyP~~~~pfa~~~~~~~~~~~rFdL~i~-G~-Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~ 519 (580)
|+||+||| +||+++. ||+++++||||++ |+ ||+|||+|+|||++|+++|+..
T Consensus 183 P~~v~~~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~--------------------- 236 (294)
T 1nnh_A 183 PFWIINIP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKA--------------------- 236 (294)
T ss_dssp CEEEECCC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHT---------------------
T ss_pred CEEEEcCC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHc---------------------
Confidence 99999999 9999876 8999999999999 98 9999999999999998888642
Q ss_pred hhcCCccccccCCcHHHHHHHhcCCC-CccceeccHHHHHHHHcCCCCccccccCCcCCCC
Q 008040 520 LKESDDHSYEVTLDDDFVTALEYGMP-PASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQ 579 (580)
Q Consensus 520 ~~~~~~e~~~~~~d~~yl~al~yG~P-P~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~ 579 (580)
|.++. .++|||+|++||+| ||||||||||||+|+++|.+||||||+||++++.
T Consensus 237 ---g~~~~----~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~ 290 (294)
T 1nnh_A 237 ---GLNED----SFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290 (294)
T ss_dssp ---TCCGG----GGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTS
T ss_pred ---CCCcc----CHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCc
Confidence 22222 36899999999999 9999999999999999999999999999999874
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.86 E-value=6.7e-23 Score=210.68 Aligned_cols=165 Identities=16% Similarity=0.239 Sum_probs=127.4
Q ss_pred cCCceeEEEEeEEEEccccCCCCCCCCCCCCChhhccccceeeeecCHHHHHHHHH-----HHHHHHHHHHHHHhCCCee
Q 008040 177 TEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRK-----RAKIVSEIRKTVESLGFVE 251 (580)
Q Consensus 177 t~~ge~el~~~~i~vls~a~~plP~~~~~l~d~e~r~r~R~ldl~~~~~~~~~~~~-----Rs~i~~~iR~fl~~~gF~E 251 (580)
+..|++||.|++|+|||+|..++|.+.... ..++++||||+| ++.+..+++. ++++.+.||++|.+.||.|
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~---~~~l~~r~l~~R-~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP---FRELESELLSRR-KKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC---HHHHHHHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh---hhhhhhHHHHhc-cchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 456899999999999999988888653221 348899999996 6999999999 9999999999999999999
Q ss_pred ecCceeeccC-----CCCCCCceeeccCCCCeeEEEE--ecHHHHHHHHH----hccCCceeEEecccccCCCCCCCCcc
Q 008040 252 VETPVLQGAA-----GGAEARPFVTYHNSLGRDLYLR--IATELHLKRML----IGGFEKIYEIGRIFRNEGLSTRHNPE 320 (580)
Q Consensus 252 VeTPiL~~~~-----~Ga~a~pF~t~~~~~~~~~yL~--~Spql~lk~ll----v~g~~rVfeIg~~FR~E~~~~rH~pE 320 (580)
|+||+|++.. +.....|+.....+++...+|| ++|+++..... .++..|+||||+|||+|+.+.+|++|
T Consensus 98 V~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~E 177 (290)
T 3qtc_A 98 IKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEE 177 (290)
T ss_dssp ECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSE
T ss_pred EECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcch
Confidence 9999999651 1111123322123456789999 99999955443 25668999999999999888899999
Q ss_pred ceeeeeEeecCC--HHHHHHHHHHHHH
Q 008040 321 FTTIEMYEAYSD--YQSMMNITEEIVT 345 (580)
Q Consensus 321 FtmlE~e~a~~d--~~d~m~l~E~li~ 345 (580)
|||+|+++++.+ +.++..+++++++
T Consensus 178 f~ql~~~~~g~~~~f~elkg~le~ll~ 204 (290)
T 3qtc_A 178 FTMLVFWQMGSGCTRENLESIITDFLN 204 (290)
T ss_dssp EEEEEEEEESTTCCHHHHHHHHHHHHH
T ss_pred heEEEEEEEcCChHHHHHHHHHHHHHH
Confidence 999999999864 6777776666664
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.83 E-value=2.5e-19 Score=181.27 Aligned_cols=272 Identities=17% Similarity=0.230 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHHHH-----hCCCeeecCceeeccCCC-----CC-CCceeeccCCC-CeeEEEEecHHHHHHHHHhc
Q 008040 229 VFRKRAKIVSEIRKTVE-----SLGFVEVETPVLQGAAGG-----AE-ARPFVTYHNSL-GRDLYLRIATELHLKRMLIG 296 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl~-----~~gF~EVeTPiL~~~~~G-----a~-a~pF~t~~~~~-~~~~yL~~Spql~lk~llv~ 296 (580)
.++.....|..|++||. +.|+++|..|++.....| .| .+|.......+ +..+-..+|--.|++.++..
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~ 83 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQ 83 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHh
Confidence 45667788999999999 999999999999964322 11 45554433223 67888999999999988753
Q ss_pred -cC---CceeEEecccccC-C-CCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCce---eecCceeecCC
Q 008040 297 -GF---EKIYEIGRIFRNE-G-LSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLT---IDYQGVEICLE 367 (580)
Q Consensus 297 -g~---~rVfeIg~~FR~E-~-~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~---~~~~~~~i~~~ 367 (580)
|| +.+|.-.++.|.+ + .|.+|.-+|+|.|||......+..|++++++++.+...+..... -.| +-...+.
T Consensus 84 y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~~~~~~y-~l~p~Lp 162 (330)
T 12as_A 84 HDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEF-GLAPFLP 162 (330)
T ss_dssp TTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCSC
T ss_pred CCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcCCC
Confidence 58 9999999999974 4 56799999999999999998888899999998777766644321 233 2223467
Q ss_pred CCcceeeHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEe
Q 008040 368 RPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLD 447 (580)
Q Consensus 368 ~pf~rit~~eai~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~d 447 (580)
.++..||..|+.++|-.... -+. ...+.+. ..||||++
T Consensus 163 ~~i~fitsqeL~~~YP~lt~------keR---------------------------E~~i~ke---------~gaVFii~ 200 (330)
T 12as_A 163 DQIHFVHSQELLSRYPDLDA------KGR---------------------------ERAIAKD---------LGAVFLVG 200 (330)
T ss_dssp SSCEEEEHHHHHHHSSSSCH------HHH---------------------------HHHHHHH---------HSEEEEEC
T ss_pred CceEEEeHHHHHHHcCCCCh------HHH---------------------------HHHHHHh---------hCCEEEEe
Confidence 88999999999998743210 011 1112211 25899999
Q ss_pred cCCCCC---ccccccCCCCCce---------eEEEEEE-c----C-EeecccccccCCHHHHHHHHHHHHHhhhhhhHhh
Q 008040 448 YPIEIS---PLAKPHRRHAGLT---------ERFELFI-C----G-REMANAFSELTDPLDQRARLEEQVRQHNEKRAAA 509 (580)
Q Consensus 448 yP~~~~---pfa~~~~~~~~~~---------~rFdL~i-~----G-~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~ 509 (580)
.|..++ |--.+.|+.+++. ...||++ + + .||.++..| .|++ .+..|++.
T Consensus 201 IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~----~L~~QL~~-------- 267 (330)
T 12as_A 201 IGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDAD----TLKHQLAL-------- 267 (330)
T ss_dssp CSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHH----HHHHHHHH--------
T ss_pred cCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHH----HHHHHHHH--------
Confidence 997654 3334556667788 9999998 4 3 499999999 7765 46666654
Q ss_pred hhhhhhhHHhhhcCCccccccCCcHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 008040 510 VSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYG-MPPASGMGLGIDRLVMLLTNSASIRDVIA 572 (580)
Q Consensus 510 ~~~~~~~~~~~~~~~~e~~~~~~d~~yl~al~yG-~PP~gG~GiGiDRLvMlltg~~sIrdvi~ 572 (580)
.|..+. ..-+|.+++..| +|+|.|.|||..||+|+|++..+|-+|.+
T Consensus 268 ------------~g~~er----~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 268 ------------TGDEDR----LELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp ------------HTCTTG----GGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred ------------cCCChh----hccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheeec
Confidence 222222 235899999999 69999999999999999999999999975
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.74 E-value=1.5e-17 Score=170.46 Aligned_cols=99 Identities=26% Similarity=0.346 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCeeecCceeecc----CCCCCCC-ceeeccCCCCeeEEEEe--cHHHHH-HHHHhccCC---ce
Q 008040 233 RAKIVSEIRKTVESLGFVEVETPVLQGA----AGGAEAR-PFVTYHNSLGRDLYLRI--ATELHL-KRMLIGGFE---KI 301 (580)
Q Consensus 233 Rs~i~~~iR~fl~~~gF~EVeTPiL~~~----~~Ga~a~-pF~t~~~~~~~~~yL~~--Spql~l-k~llv~g~~---rV 301 (580)
..++.+.||++|...||.||.||.|.+. ..|.... ++....|..+.+++||. +|.+.. -+.....-+ |+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 3678999999999999999999999963 2222111 22222234455689994 566542 112222233 89
Q ss_pred eEEecccccCCCCCCCCccceeeeeEeecC
Q 008040 302 YEIGRIFRNEGLSTRHNPEFTTIEMYEAYS 331 (580)
Q Consensus 302 feIg~~FR~E~~~~rH~pEFtmlE~e~a~~ 331 (580)
|+||+|||+|..+..|.|||+|+|++....
T Consensus 153 feiG~vFR~E~~~~~r~~EF~qle~~i~g~ 182 (288)
T 3dsq_A 153 FEIGTCYRKESQGAQHLNEFTMLNLTELGT 182 (288)
T ss_dssp EEEEEEECSCCSSSCCCSEEEEEEEEEETC
T ss_pred EEEeeEEecCCCCCCcCccEEEEEEEEEcC
Confidence 999999999999999999999999999654
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.61 E-value=1.3e-14 Score=152.11 Aligned_cols=114 Identities=19% Similarity=0.194 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhCCCeeecCceeeccC---------CCCC----CCceeeccCCC-----------CeeEEEEecHHH
Q 008040 233 RAKIVSEIRKTVESLGFVEVETPVLQGAA---------GGAE----ARPFVTYHNSL-----------GRDLYLRIATEL 288 (580)
Q Consensus 233 Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~---------~Ga~----a~pF~t~~~~~-----------~~~~yL~~Spql 288 (580)
.+++++.||++|...||.||++|.+.+.. .... ..+|... |-. .....||++.--
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~-nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLT-GEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEE-CSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEc-CccccccccccccccccceeeccchH
Confidence 35678899999999999999999997631 1000 1123221 111 144567866555
Q ss_pred HHHHHHhccC--CceeEEecccccCCCCCCCCccceeeeeEeecC--CHHHHHHHHHHHHHHH
Q 008040 289 HLKRMLIGGF--EKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYS--DYQSMMNITEEIVTHC 347 (580)
Q Consensus 289 ~lk~llv~g~--~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~--d~~d~m~l~E~li~~~ 347 (580)
.+-++|..+- -|+||||+|||+|+.+.+|+|||+|||+++++. |+.|++.+++.+++.+
T Consensus 182 ~llr~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 182 MQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp HHHHHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 5557776543 389999999999988889999999999999986 7888888887777544
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.32 E-value=2.3e-12 Score=132.42 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhCCCeeecCceeeccCCCCCCCceeecc--------CCCCeeEEEEecHHHHHHHHHhcc----CCc
Q 008040 233 RAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYH--------NSLGRDLYLRIATELHLKRMLIGG----FEK 300 (580)
Q Consensus 233 Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~--------~~~~~~~yL~~Spql~lk~llv~g----~~r 300 (580)
.+++.+.||++|...||.||++|.+.+...+..+..|...+ -++....+||+|.-..+.++++.+ --|
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~r 134 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVK 134 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHHHHhcCCCCCcc
Confidence 45788999999999999999999998642111111121111 122345789999988889888877 679
Q ss_pred eeEEecccccCCCCCCCCccceeeeeEeec--CCHHHHHHHHHHHHHHH
Q 008040 301 IYEIGRIFRNEGLSTRHNPEFTTIEMYEAY--SDYQSMMNITEEIVTHC 347 (580)
Q Consensus 301 VfeIg~~FR~E~~~~rH~pEFtmlE~e~a~--~d~~d~m~l~E~li~~~ 347 (580)
+||||+|||+++.+.+|+|||+|||+++++ .|+.|++.++|.+++.+
T Consensus 135 iFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 135 IICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999988788899999999999998 58999999999988665
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.22 E-value=1.5e-10 Score=120.14 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeeccCCCCCC------Cceee--ccCCCCeeEEEEecHHHHHHHHHhccCC--ceeE
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGAAGGAEA------RPFVT--YHNSLGRDLYLRIATELHLKRMLIGGFE--KIYE 303 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga~a------~pF~t--~~~~~~~~~yL~~Spql~lk~llv~g~~--rVfe 303 (580)
+.+.+.||++|...||.|+.+|.+.+......+ .|-.. ...+.+....||++.=-.+-+.|..+-. |+|+
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr~l~~~~~pirife 189 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQPPIRIIA 189 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHHHHTTCCSSCCBCC
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHHHHHhCCCCeeEEe
Confidence 456788999999999999999998764321111 11000 0112334456886544444455555544 9999
Q ss_pred EecccccCCCCCCCCccceeeeeEeec--CCHHHHHHHHHHHHHHH
Q 008040 304 IGRIFRNEGLSTRHNPEFTTIEMYEAY--SDYQSMMNITEEIVTHC 347 (580)
Q Consensus 304 Ig~~FR~E~~~~rH~pEFtmlE~e~a~--~d~~d~m~l~E~li~~~ 347 (580)
+|+|||++ .+.+|+|+|+|+|..... .|+.|+..++|.+++.+
T Consensus 190 iGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 190 PGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp EECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred eccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999998 688999999999987764 35666666666666554
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.07 E-value=9.2e-10 Score=119.86 Aligned_cols=112 Identities=31% Similarity=0.422 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhCCCeeecC-ceeecc---------CCCCCCC----ceeeccCC----C-----------------C
Q 008040 233 RAKIVSEIRKTVESLGFVEVET-PVLQGA---------AGGAEAR----PFVTYHNS----L-----------------G 277 (580)
Q Consensus 233 Rs~i~~~iR~fl~~~gF~EVeT-PiL~~~---------~~Ga~a~----pF~t~~~~----~-----------------~ 277 (580)
-+++.+.||++|...||.||.| |.+.+. |...-|| .|-..... + +
T Consensus 227 l~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~ 306 (508)
T 3l4g_A 227 LLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYG 306 (508)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTT
T ss_pred HHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccC
Confidence 3567888999999999999876 777653 2221122 12211000 0 0
Q ss_pred -------------eeEEEEecHHHHHHHHHhc-----cC--CceeEEecccccCCCCCCCCccceeeeeEeec--CCHHH
Q 008040 278 -------------RDLYLRIATELHLKRMLIG-----GF--EKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAY--SDYQS 335 (580)
Q Consensus 278 -------------~~~yL~~Spql~lk~llv~-----g~--~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~--~d~~d 335 (580)
...-||++.=-.+=+.|.. +. -|+|+||+|||+|..+.+|+|||+|+|...+. .|+.|
T Consensus 307 s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~f~d 386 (508)
T 3l4g_A 307 SQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGH 386 (508)
T ss_dssp BCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCCHHH
T ss_pred CccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCCHHH
Confidence 2467886543333333321 22 38999999999999999999999999998764 35666
Q ss_pred HHHHHHHHH
Q 008040 336 MMNITEEIV 344 (580)
Q Consensus 336 ~m~l~E~li 344 (580)
++.+++.++
T Consensus 387 LKg~Le~~l 395 (508)
T 3l4g_A 387 LMGVLREFF 395 (508)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555544
No 25
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=98.54 E-value=9.9e-07 Score=94.47 Aligned_cols=96 Identities=18% Similarity=0.288 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhC--------CCeeecC-ceeecc---------CCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHh
Q 008040 234 AKIVSEIRKTVESL--------GFVEVET-PVLQGA---------AGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLI 295 (580)
Q Consensus 234 s~i~~~iR~fl~~~--------gF~EVeT-PiL~~~---------~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv 295 (580)
+.+...||++|... ||.|+++ |.+.+. |...-|+.- +..-+++...-||.+.=-+.-++|.
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~-~Dtfyi~~~~vLRThts~~~~~~l~ 129 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKK-GDNYYLNRTHMLRAHTSAHQWDLLH 129 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCG-GGSCBSSSSEEECSSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccc-cceEEecCCeEEcCCCcHHHHHHHH
Confidence 45666777777766 8999999 667653 111112211 1111345567788654333344566
Q ss_pred ccCCceeEEecccccCCCCCCCCccceeeeeEeec
Q 008040 296 GGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAY 330 (580)
Q Consensus 296 ~g~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~ 330 (580)
.+..|+|++|+|||.+.+++.|.|+|.|+|--..|
T Consensus 130 ~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 130 AGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp TTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEE
T ss_pred HCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEEE
Confidence 77889999999999999999999999999976654
No 26
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.49 E-value=2.4e-07 Score=98.81 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCCeeEEEEecHHHHHHHHHhcc--
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLGRDLYLRIATELHLKRMLIGG-- 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g-- 297 (580)
.-.+++..|.+.+|+.|.+.||.||.||+|.+.. .|. +-..|. .+.-+.+++||...+..+=++....
T Consensus 28 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~--~d~~~~~~~LrP~~~~~~~~~~~~~~~ 105 (401)
T 1evl_A 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGLK 105 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE--EEETTEEEEECSCSHHHHHHHHTSSCC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe--EecCCceEEEcCCCCHHHHHHHHhhhh
Confidence 3467889999999999999999999999999742 231 112333 2234678999987776665554432
Q ss_pred ----C-CceeEEecccccCCCC--C--CCCccceeeeeEeecCCHHHHHHHHHHHHHH
Q 008040 298 ----F-EKIYEIGRIFRNEGLS--T--RHNPEFTTIEMYEAYSDYQSMMNITEEIVTH 346 (580)
Q Consensus 298 ----~-~rVfeIg~~FR~E~~~--~--rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~ 346 (580)
+ -|+|+||+|||+|..+ . -+..||+|+|+|. |.+.+++....++++..
T Consensus 106 s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~e~i~~ 162 (401)
T 1evl_A 106 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRL 162 (401)
T ss_dssp BGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred hhhhCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHHHHHHHHHH
Confidence 2 3999999999999873 2 3889999999994 77765555544445433
No 27
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.47 E-value=4.5e-07 Score=98.52 Aligned_cols=115 Identities=22% Similarity=0.246 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCCeeEEEEecH-HH--HHHHHHhc
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLGRDLYLRIAT-EL--HLKRMLIG 296 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Sp-ql--~lk~llv~ 296 (580)
.-.+++.+|.+.+|+.|.+.||.||.||+|.+.. .|. +-..|.. .+..+.+++||... +. .+-+..+.
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~-~d~~~~~~~LrPt~ee~t~~i~r~~~~ 143 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRI-ADRHKRELLYGPTNEEMITEIFRAYIK 143 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEE-ECTTCCEEEECSCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEE-EeCCCCeEEECCCChHHHHHHHHHHHh
Confidence 4578899999999999999999999999999742 231 1122322 13346789999742 22 12222232
Q ss_pred cC----CceeEEecccccC-CCCCC--CCccceeeeeEeecCCHHHHHHHHHHH
Q 008040 297 GF----EKIYEIGRIFRNE-GLSTR--HNPEFTTIEMYEAYSDYQSMMNITEEI 343 (580)
Q Consensus 297 g~----~rVfeIg~~FR~E-~~~~r--H~pEFtmlE~e~a~~d~~d~m~l~E~l 343 (580)
.. -|+|+||+|||+| ....- +..||+|+|+|....+.++.-..+..+
T Consensus 144 s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 144 SYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp BGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred hccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 32 4999999999999 43233 789999999999877766654444434
No 28
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.41 E-value=1.6e-06 Score=94.86 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=37.0
Q ss_pred ceeEEecccccCCC-CCCCCccceeeeeEeecC--CHHHHHHHHHHHH
Q 008040 300 KIYEIGRIFRNEGL-STRHNPEFTTIEMYEAYS--DYQSMMNITEEIV 344 (580)
Q Consensus 300 rVfeIg~~FR~E~~-~~rH~pEFtmlE~e~a~~--d~~d~m~l~E~li 344 (580)
|+||||+|||.|.. +..|.+||+|++..+... |+.|+..++|.++
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL 254 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALL 254 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHH
Confidence 89999999999877 778999999999999874 5666666666555
No 29
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.40 E-value=2.4e-06 Score=89.36 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC------CCC----CCCceeeccCCCCeeEEEEecHHHHHHHHHhcc
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA------GGA----EARPFVTYHNSLGRDLYLRIATELHLKRMLIGG 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~------~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g 297 (580)
.-.+++..|.+.+|+.|...||.||.||+|.+.. +|. ....|.. .+.-+..+.||.-.-...-|+++..
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~~~~ 112 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQF-IKHEGQSITLRYDFTLPLVRLYSQI 112 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEE-ECTTCCEEEECCCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEE-ECCCCCEEecCCCCcHHHHHHHHhc
Confidence 3467888999999999999999999999998631 131 1123332 2335678889964444444444432
Q ss_pred ----CCceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 298 ----FEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 298 ----~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
--|+|+||+|||+|....-|.-||+|+++|.-..+
T Consensus 113 ~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 113 KDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGES 151 (344)
T ss_dssp CSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSC
T ss_pred CCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCC
Confidence 24999999999999877778999999999997765
No 30
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.26 E-value=4.8e-06 Score=90.88 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCceeeccC-----CCC----CCCceeeccC---CCCeeEEEEecHH-----HHHH
Q 008040 229 VFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA-----GGA----EARPFVTYHN---SLGRDLYLRIATE-----LHLK 291 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----~Ga----~a~pF~t~~~---~~~~~~yL~~Spq-----l~lk 291 (580)
-.+++..|.+.+|+.|.+.||.||.||+|.+.. +|. +-..|..... -++.+++||.-.+ +|.+
T Consensus 43 g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~ 122 (477)
T 1hc7_A 43 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHh
Confidence 467889999999999999999999999999752 221 1122332211 1257899997665 3433
Q ss_pred HHHh-ccC-CceeEEecccccCCCCC--CCCccceeeeeEeecCCHHHHHHHHHHH
Q 008040 292 RMLI-GGF-EKIYEIGRIFRNEGLST--RHNPEFTTIEMYEAYSDYQSMMNITEEI 343 (580)
Q Consensus 292 ~llv-~g~-~rVfeIg~~FR~E~~~~--rH~pEFtmlE~e~a~~d~~d~m~l~E~l 343 (580)
.+.. ..+ =|+||||+|||+|.... -+.-||+|.|+|..+.+.++....+..+
T Consensus 123 ~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~ 178 (477)
T 1hc7_A 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRM 178 (477)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred hhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHH
Confidence 3211 122 39999999999996533 3888999999999999887776666655
No 31
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.26 E-value=5.9e-06 Score=92.06 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCCeeEEEEecHHHHHHHHHhcc--
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLGRDLYLRIATELHLKRMLIGG-- 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g-- 297 (580)
.-.+++..|.+.+|+.|.+.||.||.||+|.+.. +|. .-..|.. .+..+..++||.-.+-..=++....
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~-~d~~~~~~~LrP~~~~~~~~~~~~~~~ 123 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRL-KDRNDRDYILGPTHEETFTELIRDEIN 123 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEE-ECTTCCEEEECSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEE-ecCCCCeEEEccccHHHHHHHHHhhcc
Confidence 4577899999999999999999999999999652 221 1123322 1234688999866544333332222
Q ss_pred ----C-CceeEEecccccCCCCCC---CCccceeeeeEeecCCHHHHHHHHHHH
Q 008040 298 ----F-EKIYEIGRIFRNEGLSTR---HNPEFTTIEMYEAYSDYQSMMNITEEI 343 (580)
Q Consensus 298 ----~-~rVfeIg~~FR~E~~~~r---H~pEFtmlE~e~a~~d~~d~m~l~E~l 343 (580)
+ =|+|+||+|||+|..... +.-||+|.|+|.-..+.+++...++.+
T Consensus 124 s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 124 SYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDY 177 (572)
T ss_dssp BGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHH
Confidence 2 299999999999987432 789999999999877666655555443
No 32
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.23 E-value=2e-06 Score=91.99 Aligned_cols=104 Identities=18% Similarity=0.282 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeecc----CC-CCCC-----CceeeccCCCCeeEEEEecHHHHHHHHHhc-
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA----AG-GAEA-----RPFVTYHNSLGRDLYLRIATELHLKRMLIG- 296 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~----~~-Ga~a-----~pF~t~~~~~~~~~yL~~Spql~lk~llv~- 296 (580)
.-.+++..|.+.+|+.|.+.||.||.||+|.+. .+ |... ..|.. .+..|..++||.-.....=++++.
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~-~D~~g~~~~Lrp~~t~~~~r~~~~~ 92 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTF-KDKGDRSITLRPEGTAAVVRSYIEH 92 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEE-CHHHHCCEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEE-EcCCCCEEEeCCCChHHHHHHHHhc
Confidence 356788999999999999999999999999963 12 1111 22322 112356789996555544444331
Q ss_pred ------c-CCceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 297 ------G-FEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 297 ------g-~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
. --|+|+||+|||+|....-|.-||+|+|+|.-..+
T Consensus 93 ~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 93 KMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp TGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCC
T ss_pred cccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCC
Confidence 1 24999999999999776678889999999997765
No 33
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.22 E-value=4.6e-06 Score=94.36 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCC-eeEEEEecHHHHHHHHHhccC
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLG-RDLYLRIATELHLKRMLIGGF 298 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~-~~~yL~~Spql~lk~llv~g~ 298 (580)
.-.+++..|.+.+|+.|.+.||.||.||+|.+.. +|. .-..|.+ .+.-+ .+++||.-.+...=++.....
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~-~d~~~~~~~~LrP~~~~~~~~~~~~~~ 347 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPP-MQLDETESMVLRPMNCPHHMMIYANKP 347 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCC-EEETTTEEEEECSSSHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCccee-EecCCCeEEEeCCCCCHHHHHHHHhhh
Confidence 4578899999999999999999999999999642 221 1122321 12236 789999766655555544332
Q ss_pred -------CceeEEecccccCCCCCC----CCccceeeeeEeecCCHHHHHHHHHHHHH
Q 008040 299 -------EKIYEIGRIFRNEGLSTR----HNPEFTTIEMYEAYSDYQSMMNITEEIVT 345 (580)
Q Consensus 299 -------~rVfeIg~~FR~E~~~~r----H~pEFtmlE~e~a~~d~~d~m~l~E~li~ 345 (580)
=|+|+||+|||+|.+..+ +.-||||.|+|. |.+.+++.+...+++.
T Consensus 348 ~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~ 404 (645)
T 1nyr_A 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVN 404 (645)
T ss_dssp CBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred hhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHH
Confidence 399999999999998643 679999999998 7665555554444443
No 34
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.22 E-value=2.4e-06 Score=91.84 Aligned_cols=119 Identities=15% Similarity=0.159 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCCCCCceee-ccCCCCeeEEEEecHHHHHHHHHhcc-----
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGAEARPFVT-YHNSLGRDLYLRIATELHLKRMLIGG----- 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga~a~pF~t-~~~~~~~~~yL~~Spql~lk~llv~g----- 297 (580)
.-.+++..|.+.+++++.+.||.||.||+|.... .|- ...|.- -....+.++||+...+..+=++....
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~-~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~ 248 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQ-LPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEE 248 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSC-TTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCC-CCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccc
Confidence 3466789999999999999999999999999642 221 111211 01123578999977665544433211
Q ss_pred --CCceeEEecccccCCCC----C---CCCccceeeeeEeecCCHHHHHHHHHHHHHHHH
Q 008040 298 --FEKIYEIGRIFRNEGLS----T---RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCA 348 (580)
Q Consensus 298 --~~rVfeIg~~FR~E~~~----~---rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~ 348 (580)
--|+|++|+|||+|... + -+..||+|+|++. |.+-++..+..++++..+.
T Consensus 249 ~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~~ 307 (425)
T 2dq3_A 249 NLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDAE 307 (425)
T ss_dssp TCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHHH
Confidence 23999999999999854 2 3788999999977 5555556655666664443
No 35
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.21 E-value=7.4e-06 Score=88.13 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC-----CCCC--CCceeeccCCCCeeEEEEecHHHHHHHHHhcc---
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA-----GGAE--ARPFVTYHNSLGRDLYLRIATELHLKRMLIGG--- 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----~Ga~--a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g--- 297 (580)
.-.+++.+|.+.+|+-|...||.||.||+|.+.. .|.. -..|.. .+..|..+.||.-.....=++++..
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~-~D~~g~~l~LrPd~t~~~aR~~~~~~~~ 96 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSF-VDKGGREVTLIPEATPSTVRMVTSRKDL 96 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEE-ECTTSCEEEECSCSHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEE-ECCCCCEEEeCCCChHHHHHHHHhcCCC
Confidence 3467899999999999999999999999999741 2321 122322 2334678889975555555555432
Q ss_pred -C-CceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 298 -F-EKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 298 -~-~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
+ -|.|+||++||+|....-+.-||+|+++|.-..+
T Consensus 97 ~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 97 QRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD 133 (434)
T ss_dssp CSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC
T ss_pred CCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCC
Confidence 2 3999999999999776678889999999997665
No 36
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.19 E-value=8.8e-06 Score=88.39 Aligned_cols=118 Identities=25% Similarity=0.216 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC-----CCC----CCCceeeccCC---CCeeEEEEecHHHHHHHHHh
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA-----GGA----EARPFVTYHNS---LGRDLYLRIATELHLKRMLI 295 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----~Ga----~a~pF~t~~~~---~~~~~yL~~Spql~lk~llv 295 (580)
.-.+++..|.+.+|+.|...||.||.||+|.+.. .|. .-..|...... .+.+++||.-.+..+=++.+
T Consensus 36 ~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~ 115 (459)
T 1nj8_A 36 YGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMK 115 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHH
Confidence 3467899999999999999999999999999641 331 11233322211 26789999776665554443
Q ss_pred cc------C-CceeEEecccccCCCCC-C--CCccce-eeeeEeecCCHHHHHHHHHHHHH
Q 008040 296 GG------F-EKIYEIGRIFRNEGLST-R--HNPEFT-TIEMYEAYSDYQSMMNITEEIVT 345 (580)
Q Consensus 296 ~g------~-~rVfeIg~~FR~E~~~~-r--H~pEFt-mlE~e~a~~d~~d~m~l~E~li~ 345 (580)
.. + =|+|+||+|||+|..++ - +.-||+ |.|.+..+.+.++.....++++.
T Consensus 116 ~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 116 LWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp TTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 22 1 29999999999998733 3 778999 99999999987776665444443
No 37
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.18 E-value=8.8e-06 Score=86.84 Aligned_cols=104 Identities=15% Similarity=0.283 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC--CCCceeeccCCCCeeEEEEecHHHHHHHHHhcc----
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA--EARPFVTYHNSLGRDLYLRIATELHLKRMLIGG---- 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga--~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g---- 297 (580)
.-.+++..|.+.+|+.|...||.||.||+|.... +|. ....|.. .+.-|..+-||.-.-...-|+++..
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~ 100 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKL-LDQQGNTLVLRPDMTAPIARLVASSLKDR 100 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEE-ECTTSCEEEECSCSHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEE-ECCCCCEEEECCCCHHHHHHHHHhhcccC
Confidence 3467789999999999999999999999997542 121 1123332 2334677788854333334444432
Q ss_pred -C-CceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 298 -F-EKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 298 -~-~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
+ -|.|+||+|||+|....-|.-||+|+++|.-..+
T Consensus 101 ~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 101 AYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp CSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCC
T ss_pred CCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCC
Confidence 2 3999999999999877778899999999997654
No 38
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.18 E-value=5.7e-06 Score=89.88 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHH-HhCCCeeecCceeeccC----CCC----CCCceeeccC-CCCeeEEEEecHHHHHHHHHhcc
Q 008040 228 DVFRKRAKIVSEIRKTV-ESLGFVEVETPVLQGAA----GGA----EARPFVTYHN-SLGRDLYLRIATELHLKRMLIGG 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl-~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~-~~~~~~yL~~Spql~lk~llv~g 297 (580)
.-.+++..|.+.+|+.+ .+.||.||.||+|.+.. .|. .-..|.+... ..+.+++||...+...=++....
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~ 141 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKK 141 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhc
Confidence 45778999999999999 99999999999998641 231 1123332211 13567999977665554444332
Q ss_pred C-------CceeEEecccccCCCC--C--CCCccceeeeeEeecCCHHHHHHHHHHHHHHHHH
Q 008040 298 F-------EKIYEIGRIFRNEGLS--T--RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCAL 349 (580)
Q Consensus 298 ~-------~rVfeIg~~FR~E~~~--~--rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~ 349 (580)
. =|+|++|+|||+|... . .+.-||||.|++. |.+.+++.+.+++++..+..
T Consensus 142 ~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 142 DRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDI 203 (460)
T ss_dssp CCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred cccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 2 2899999999999875 2 4889999999996 67666666666666655444
No 39
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=98.16 E-value=6.5e-06 Score=89.60 Aligned_cols=104 Identities=17% Similarity=0.294 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----C-CCC-----CCceeeccCCC-CeeEEEEecHHHHHHHHHhc
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----G-GAE-----ARPFVTYHNSL-GRDLYLRIATELHLKRMLIG 296 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~-Ga~-----a~pF~t~~~~~-~~~~yL~~Spql~lk~llv~ 296 (580)
.-.+++..|.+.+|+.|...||.||.||+|.... + |.. -..|.. .+.- |..+.||.-.....=++++.
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~-~D~~~g~~l~LRPd~t~~~ar~~~~ 122 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSF-VDALNGENLTLRPENTAAVVRAAIE 122 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEE-ECTTTCCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEE-ecCCCCCEEEeCcccHHHHHHHHHH
Confidence 3467899999999999999999999999998642 2 431 123332 1333 67788996554444454442
Q ss_pred c------CCceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 297 G------FEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 297 g------~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
. --|+|+||+|||+|....-+.-||||+++|.-..+
T Consensus 123 ~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 123 HNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFA 164 (467)
T ss_dssp TTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCC
T ss_pred cccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCC
Confidence 2 23999999999999877778889999999986543
No 40
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=98.16 E-value=7.1e-06 Score=90.07 Aligned_cols=117 Identities=22% Similarity=0.189 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCceeeccC---C--C----CCCCceeeccCC---CCeeEEEEecHHHHHHHHHhc
Q 008040 229 VFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA---G--G----AEARPFVTYHNS---LGRDLYLRIATELHLKRMLIG 296 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~---~--G----a~a~pF~t~~~~---~~~~~yL~~Spql~lk~llv~ 296 (580)
-.+++..|.+.+|+.|.+ ||.||.||+|.+.. . | -.-..|.+.... .+.+++||...+..+=++...
T Consensus 70 g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 148 (501)
T 1nj1_A 70 GFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHh
Confidence 456788899999999999 99999999999641 1 1 011234322111 256899997776655444432
Q ss_pred c------C-CceeEEecccccCCCCC---CCCccce-eeeeEeecCCHHHHHHHHHHHHHH
Q 008040 297 G------F-EKIYEIGRIFRNEGLST---RHNPEFT-TIEMYEAYSDYQSMMNITEEIVTH 346 (580)
Q Consensus 297 g------~-~rVfeIg~~FR~E~~~~---rH~pEFt-mlE~e~a~~d~~d~m~l~E~li~~ 346 (580)
- + =|+|+||+|||+|..++ -+.-||+ |.|++..+.+.++..+.+++++..
T Consensus 149 ~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 149 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 1 2 29999999999998743 3778999 999999999888877766665543
No 41
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.16 E-value=3.4e-06 Score=95.34 Aligned_cols=116 Identities=15% Similarity=0.200 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCCeeEEEEecHHHHHHHHHhcc--
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLGRDLYLRIATELHLKRMLIGG-- 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g-- 297 (580)
.-.+++..|.+.+|+.+.+.||.||.||+|.+.. +|- ....|. .+.-+.+++|+...+...=++....
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~--~d~~~~~~~LrP~~~~~~~~~~~~~~~ 346 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGLK 346 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE--EEETTEEEEECSSSHHHHHHHHTTSCE
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee--eecCCceEEecCCCCHHHHHHHHhhhh
Confidence 4577899999999999999999999999999752 331 112343 2234678999976655544444332
Q ss_pred ----C-CceeEEecccccCCCCC----CCCccceeeeeEeecCCHHHHHHHHHHHHHH
Q 008040 298 ----F-EKIYEIGRIFRNEGLST----RHNPEFTTIEMYEAYSDYQSMMNITEEIVTH 346 (580)
Q Consensus 298 ----~-~rVfeIg~~FR~E~~~~----rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~ 346 (580)
+ =|+|+||+|||+|.+.. .+.-||||.|+|. |.+.+++.+..++++..
T Consensus 347 syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~ 403 (642)
T 1qf6_A 347 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRL 403 (642)
T ss_dssp EGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred hccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHH
Confidence 1 29999999999999832 3789999999998 77665555554444443
No 42
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=98.16 E-value=9e-06 Score=85.99 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeecCceeecc----CCCC--C-CCceeeccCCCCeeEEEEecHHHHHHHHHhc------
Q 008040 230 FRKRAKIVSEIRKTVESLGFVEVETPVLQGA----AGGA--E-ARPFVTYHNSLGRDLYLRIATELHLKRMLIG------ 296 (580)
Q Consensus 230 ~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~----~~Ga--~-a~pF~t~~~~~~~~~yL~~Spql~lk~llv~------ 296 (580)
.+++..|.+.+|+.|...||.||.||+|.+. .+|. . ...|.. .+.-|..+.||.-.-...-|+++.
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 115 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRL-FDGGGDAVALRPEMTPSIARMAAPRVAAGR 115 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBC-CCCSSSCEEECSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEE-ECCCCCEEEECCcCHHHHHHHHHhccccCC
Confidence 5678899999999999999999999999864 1221 1 123322 233466778885433333333332
Q ss_pred cCCceeEEecccccCCC------CCCCCccceeeeeEeecCC
Q 008040 297 GFEKIYEIGRIFRNEGL------STRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 297 g~~rVfeIg~~FR~E~~------~~rH~pEFtmlE~e~a~~d 332 (580)
.--|.|+||+|||+|.. ..-|.-||+|+++|.-..+
T Consensus 116 ~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEE 157 (373)
T ss_dssp CCCEEEEEEEEEECC------------CEEEEEEEEEECSSC
T ss_pred CCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCC
Confidence 23599999999999987 5567889999999986544
No 43
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.11 E-value=1.2e-05 Score=86.11 Aligned_cols=103 Identities=26% Similarity=0.432 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----C-CCC-----CCceeeccCCCCeeEEEEecHHHHHHHHHh-cc
Q 008040 229 VFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----G-GAE-----ARPFVTYHNSLGRDLYLRIATELHLKRMLI-GG 297 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~-Ga~-----a~pF~t~~~~~~~~~yL~~Spql~lk~llv-~g 297 (580)
-.+++.+|.+.+|+-|.+.||.||.||+|.+.. + |.. -..|.. .+..|..+.||.-.-...=++.+ ..
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~ar~~~~~~ 94 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTF-QDRGGRSLTLRPEGTAAMVRAYLEHG 94 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEE-ECCCCCEEeeCCcchHHHHHHHHhcc
Confidence 467889999999999999999999999999741 2 321 123432 23346788898644444444443 22
Q ss_pred C------CceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 298 F------EKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 298 ~------~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
. -|.|+||++||+|....-|.-||+|+++|.-..+
T Consensus 95 ~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 95 MKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSE 135 (421)
T ss_pred ccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCC
Confidence 2 4999999999999776668889999999997655
No 44
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.09 E-value=1.2e-05 Score=85.95 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----C-CCC-----CCceeeccCCCCeeEEEEecHHHHHHHHHh-c
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----G-GAE-----ARPFVTYHNSLGRDLYLRIATELHLKRMLI-G 296 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~-Ga~-----a~pF~t~~~~~~~~~yL~~Spql~lk~llv-~ 296 (580)
.-.+++.+|.+.+|+-|...||.||.||+|.+.. + |.. -..|.. .+-.|..+.||.-.....-+..+ .
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~aR~~~~~ 94 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTF-EDRNGDSLTLRPEGTAGCVRAGIEH 94 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEE-ECTTSCEEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEE-EcCCCCEEEeCCCchHHHHHHHHhc
Confidence 3467889999999999999999999999999741 2 431 123432 23346788899644444444443 2
Q ss_pred c-----CCceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 297 G-----FEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 297 g-----~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
. --|.|+||++||+|....-|.-||+|+++|.-..+
T Consensus 95 ~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 95 GLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp TCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCC
T ss_pred ccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCC
Confidence 2 24999999999999777678899999999997665
No 45
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=98.07 E-value=1.2e-05 Score=86.21 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeecc----CCCCCCCceeec-cCCCCeeEEEEecHHHHHHHHHhcc-----
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA----AGGAEARPFVTY-HNSLGRDLYLRIATELHLKRMLIGG----- 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~----~~Ga~a~pF~t~-~~~~~~~~yL~~Spql~lk~llv~g----- 297 (580)
.-.+++..|.+.+++.+.+.||.||.||+|.+. ..|- ...|.-. ...-+.++||+...+..+-.++...
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~-~~~f~~emy~~~d~~l~L~Pt~e~~~~~~~~~~~~s~~ 242 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGH-FPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYE 242 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTC-TTTTGGGSCBBTTSSEEECSSTHHHHHHTTTTCEEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCC-CCcCchhcEEEcCCeEEEeecCcHHHHHHhcccccCch
Confidence 346778899999999999999999999999964 1231 1123110 0112568999988887766554332
Q ss_pred -C-CceeEEecccccCCCC----C---CCCccceeeeeEeecCC-HHHHHHHHHHHHHHH
Q 008040 298 -F-EKIYEIGRIFRNEGLS----T---RHNPEFTTIEMYEAYSD-YQSMMNITEEIVTHC 347 (580)
Q Consensus 298 -~-~rVfeIg~~FR~E~~~----~---rH~pEFtmlE~e~a~~d-~~d~m~l~E~li~~~ 347 (580)
+ =|+|++|+|||+|-.+ + -+.-||+|+|++..... .++..+..++++..+
T Consensus 243 ~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 243 ALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp GCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred hCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 1 2999999999999632 2 37889999999886554 477777677766544
No 46
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=98.07 E-value=7.8e-06 Score=89.76 Aligned_cols=121 Identities=18% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC---CCC------CCCceeeccC---CCCeeEEEEecHHHHHHHHHh
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA---GGA------EARPFVTYHN---SLGRDLYLRIATELHLKRMLI 295 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~---~Ga------~a~pF~t~~~---~~~~~~yL~~Spql~lk~llv 295 (580)
.-.+++..|.+.+|+.|.+.||.||.||+|.+.. .++ +-..|.+... -++.+++||...+..+=.+..
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~ 132 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFS 132 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHH
Confidence 4567889999999999999999999999998641 111 1123433221 125789999776654443332
Q ss_pred cc------C-CceeEEecccccCCCCC---CCCccceeeeeEeecCCHHHHHHHHHHHHHHHH
Q 008040 296 GG------F-EKIYEIGRIFRNEGLST---RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCA 348 (580)
Q Consensus 296 ~g------~-~rVfeIg~~FR~E~~~~---rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~ 348 (580)
.. + =|+||+|+|||+|-..+ -+.-||+|.|.+....+.++..+.++.++....
T Consensus 133 ~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~ 195 (518)
T 3ial_A 133 KWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVID 195 (518)
T ss_dssp HHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred hhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 21 2 28999999999995433 488899999999987999998888888775443
No 47
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=98.07 E-value=6.3e-06 Score=89.28 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeecc----CCCCCCCceeec-cCCCCeeEEEEecHHHHHHHHHhcc-----
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA----AGGAEARPFVTY-HNSLGRDLYLRIATELHLKRMLIGG----- 297 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~----~~Ga~a~pF~t~-~~~~~~~~yL~~Spql~lk~llv~g----- 297 (580)
.-.+++..|.+.+++.+.+.||.||.||+|.+. ..| ....|.-. +..-+.++||+...+..+=.+....
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG-~~~~f~~emy~~~d~~l~LrPt~e~~~~~~~~~~~~s~~ 269 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGST-SFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGK 269 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTS-CTTHHHHTCCBBTTSSCEECSSTHHHHHHTTTTEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcC-CCCCChHhhCeecCCcEEEcCcCcHHHHHHHHhCccCch
Confidence 356778999999999999999999999999964 233 22223210 1122568999988777655543321
Q ss_pred -C-CceeEEecccccCCCCC-------CCCccceeeeeEeecCCHHHHHHHHHHHHHHH
Q 008040 298 -F-EKIYEIGRIFRNEGLST-------RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHC 347 (580)
Q Consensus 298 -~-~rVfeIg~~FR~E~~~~-------rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~ 347 (580)
+ =|+|++|+|||+|-... -+.-||+|+|++ .|.+.++..+..++++..+
T Consensus 270 ~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~ 327 (455)
T 2dq0_A 270 DLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNA 327 (455)
T ss_dssp TCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHH
T ss_pred hCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHH
Confidence 1 28999999999998632 378899999999 5776677777777777544
No 48
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=98.06 E-value=1.8e-05 Score=87.06 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeecc---C--CCCCCCce-----eeccC---CCCeeEEEEecHHHHHHHHH
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA---A--GGAEARPF-----VTYHN---SLGRDLYLRIATELHLKRML 294 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~---~--~Ga~a~pF-----~t~~~---~~~~~~yL~~Spql~lk~ll 294 (580)
.-.+++..|.+.+|+.+.+.||.||.||+|.+. . .| ...-| .+... .++.+++||.-.+..+=++.
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sG-h~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~ 137 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKT-HVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAY 137 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-SCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccC-CcccccccceEEeccCCcccccceeeCCCCcHHHHHHH
Confidence 356788999999999999999999999999854 1 23 22222 22111 01346889866555433333
Q ss_pred hcc------C-CceeEEecccccCCCCC---CCCccceeeeeEeecCCHHHHHHHHHHHHHHH
Q 008040 295 IGG------F-EKIYEIGRIFRNEGLST---RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHC 347 (580)
Q Consensus 295 v~g------~-~rVfeIg~~FR~E~~~~---rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~ 347 (580)
... + =|+|++|+|||+|-..+ -+.-||+|.|.+..|.+.++..+.++.++...
T Consensus 138 ~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~ 200 (519)
T 4hvc_A 138 AKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLY 200 (519)
T ss_dssp HHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHH
Confidence 221 2 28999999999995543 47789999999999999888888777766543
No 49
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=98.05 E-value=8.7e-06 Score=88.67 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCCeeEEEEecHHHHHHHHHh-----
Q 008040 229 VFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLGRDLYLRIATELHLKRMLI----- 295 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~llv----- 295 (580)
-.+++..|.+.+|+.|...||.||.||+|.+.. +|. +-..|.. +.-+..++||.-.+...=++.+
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s 125 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAK 125 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhh
Confidence 467889999999999999999999999999752 331 1123332 2346789999655443322221
Q ss_pred c----cC-CceeEEecccccCCCC--CC--CCccceeeeeEeec
Q 008040 296 G----GF-EKIYEIGRIFRNEGLS--TR--HNPEFTTIEMYEAY 330 (580)
Q Consensus 296 ~----g~-~rVfeIg~~FR~E~~~--~r--H~pEFtmlE~e~a~ 330 (580)
- .+ =|+|+||+|||+|... .- +.-||+|+|+|.-.
T Consensus 126 ~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~ 169 (471)
T 3a32_A 126 HRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV 169 (471)
T ss_dssp HGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE
T ss_pred ccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc
Confidence 1 23 3999999999999865 33 78899999999853
No 50
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=98.04 E-value=1.8e-05 Score=85.83 Aligned_cols=103 Identities=25% Similarity=0.352 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeecCceeeccC---C--CCC--CCceeeccCCCCeeEEEEecHHHHHHHHHhcc----
Q 008040 229 VFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA---G--GAE--ARPFVTYHNSLGRDLYLRIATELHLKRMLIGG---- 297 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~---~--Ga~--a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g---- 297 (580)
-.+++..|.+.+|+.|...||.||.||++.... . |.. -..|.. .+.-|..+-||.-.-...=|+++..
T Consensus 42 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~ 120 (456)
T 3lc0_A 42 AMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNF-ITKGGHRVALRPEMTPSLARLLLGKGRSL 120 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEE-ECSSSCEEEECSCSHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEE-EcCCCCEEecCCcCHHHHHHHHHhcCccc
Confidence 457889999999999999999999999998642 1 321 123322 2334677788854433344444432
Q ss_pred --CCceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 298 --FEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 298 --~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
--|.|+||+|||+|....-|.-||+|+++|.-..+
T Consensus 121 ~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 121 LLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp CSSEEEEECCEEECCCC-----CCEEEEEEEEEESCC
T ss_pred CCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCC
Confidence 24899999999999887778999999999997653
No 51
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.04 E-value=1.3e-05 Score=87.21 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeecc----CCCCCCC--ceeeccCC---------------CCeeEEEEecH
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA----AGGAEAR--PFVTYHNS---------------LGRDLYLRIAT 286 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~----~~Ga~a~--pF~t~~~~---------------~~~~~yL~~Sp 286 (580)
.-.++|..|.+.+|+.|..+||.||+||++... .+|...+ .|... +. -+..+.||.-.
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~-d~~~~g~~~~~~~~~~~~g~~l~LRpd~ 102 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLE-PILPPNRQAEKDKSGDTGSEARALKFDQ 102 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEE-EEC----------------CCEEECSCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEe-cccccccccccccccCCCCCEEEeCCCC
Confidence 345678999999999999999999999999642 1232222 34321 21 15677898544
Q ss_pred HHHHHHHHhcc-----C-CceeEEecccccCCCCCCCCccceeeeeEeecCC
Q 008040 287 ELHLKRMLIGG-----F-EKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 287 ql~lk~llv~g-----~-~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d 332 (580)
-...-|+++.. + -|.|+||+|||+|....-|.-||+|+++|.-..+
T Consensus 103 T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~ 154 (465)
T 3net_A 103 TVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGRE 154 (465)
T ss_dssp HHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSS
T ss_pred hHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCC
Confidence 44444444322 2 3999999999999887778899999999997653
No 52
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.95 E-value=4.9e-05 Score=82.21 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeecc-----CCCCCCC-ceeeccCCCCeeEEEEecHHHHHHHHHhcc---C
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA-----AGGAEAR-PFVTYHNSLGRDLYLRIATELHLKRMLIGG---F 298 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~-----~~Ga~a~-pF~t~~~~~~~~~yL~~Spql~lk~llv~g---~ 298 (580)
.-.+++..|.+.+|+.|...||.||.||+|.+. ..|...+ .|. ..+--|..+.||.-.-.-.-|.++.. -
T Consensus 26 ~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~-f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p 104 (464)
T 4g84_A 26 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYD-LKDQGGELLSLRYDLTVPFARYLAMNKLTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCB-BCCCSSCCEEECSCSHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEE-EECCCCCEEEeCCcCcHHHHHHHHhcCCCC
Confidence 346788999999999999999999999999853 1232221 221 22335677888852111122333321 1
Q ss_pred CceeEEecccccCCCCC--CCCccceeeeeEeec
Q 008040 299 EKIYEIGRIFRNEGLST--RHNPEFTTIEMYEAY 330 (580)
Q Consensus 299 ~rVfeIg~~FR~E~~~~--rH~pEFtmlE~e~a~ 330 (580)
-|.|+||++||.|.... -|.-||+|+++|.-.
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G 138 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 138 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEEEEEEEES
T ss_pred ceeEEEecceeccCCccccCccceeeecceeccC
Confidence 38899999999996543 577899999999865
No 53
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.94 E-value=1.1e-05 Score=87.57 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCCeeEEEEecHHHHHHHHHhccC-
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLGRDLYLRIATELHLKRMLIGGF- 298 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~- 298 (580)
.-.+++..|++.+++.+.++||.||.||.|.+.. .|- +...|.+... +.++||....|..+=.+.....
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC--CcceEEeccCcHHHHHHHhcccc
Confidence 4678999999999999999999999999999641 221 0123433211 5689999888887644322211
Q ss_pred ------CceeEEecccccCCCC----C---CCCccceeeeeEeecCCHHH--HHHHHHHHHHHH
Q 008040 299 ------EKIYEIGRIFRNEGLS----T---RHNPEFTTIEMYEAYSDYQS--MMNITEEIVTHC 347 (580)
Q Consensus 299 ------~rVfeIg~~FR~E~~~----~---rH~pEFtmlE~e~a~~d~~d--~m~l~E~li~~~ 347 (580)
=|+|++++|||+|-.+ + -+.-||+|.|++. |..-++ ..+..++++...
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHHHHH
Confidence 2899999999999632 2 4777999999985 655555 777777766544
No 54
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.92 E-value=4.2e-05 Score=84.18 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeecc-----CCCCCCC-ceeeccCCCCeeEEEEecHHHHHHHHHhcc---C
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGA-----AGGAEAR-PFVTYHNSLGRDLYLRIATELHLKRMLIGG---F 298 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~-----~~Ga~a~-pF~t~~~~~~~~~yL~~Spql~lk~llv~g---~ 298 (580)
.-.++|..|.+.+|+.|..+||.||.||+|.+. ..|...+ .|. ..+--|..+.||.-.-.-.-|+++.. -
T Consensus 79 ~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~-f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p 157 (517)
T 4g85_A 79 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYD-LKDQGGELLSLRYDLTVPFARYLAMNKLTN 157 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCB-BCCTTSCCEEECSCSHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEE-EECCCCCEEEeCCcCcHHHHHHHHhCCCCC
Confidence 456788999999999999999999999999853 1232221 221 22345677888852211222333322 1
Q ss_pred CceeEEecccccCCCCC--CCCccceeeeeEeecC
Q 008040 299 EKIYEIGRIFRNEGLST--RHNPEFTTIEMYEAYS 331 (580)
Q Consensus 299 ~rVfeIg~~FR~E~~~~--rH~pEFtmlE~e~a~~ 331 (580)
-|.|+||++||.|.... -|.-||||+++|....
T Consensus 158 ~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 158 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp EEEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred ceeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 38899999999997543 5778999999998653
No 55
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.89 E-value=6.2e-05 Score=82.28 Aligned_cols=120 Identities=17% Similarity=0.134 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CC-CceeeccCCCCeeEEEEecHHHHHHHHHhccC
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EA-RPFVTYHNSLGRDLYLRIATELHLKRMLIGGF 298 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a-~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~ 298 (580)
.-.+++..|++.+++.+.+.||.||.||.|.+.. .|- .. ..|.+.. ..+.++||+...|..+=.+...-.
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~-~~~~~l~L~PTaE~~~~~l~~~~i 295 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP-SRFEDLNLAGTAEVGLAGYFMDHS 295 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT-TTSSSCEECSSHHHHHHHHHTTEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec-CCCCeEEECCcCcHHHHHHHhhcc
Confidence 4567888899999999999999999999999641 221 11 3343321 114589999888876654433221
Q ss_pred -------CceeEEecccccCCC---CC---CCCccceeeeeEeecCCH-HHHHHHHHHHHHHHH
Q 008040 299 -------EKIYEIGRIFRNEGL---ST---RHNPEFTTIEMYEAYSDY-QSMMNITEEIVTHCA 348 (580)
Q Consensus 299 -------~rVfeIg~~FR~E~~---~~---rH~pEFtmlE~e~a~~d~-~d~m~l~E~li~~~~ 348 (580)
=|+|++++|||+|-. ++ -+.-||+|+|++..-.+. ++..+..++++....
T Consensus 296 ~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~ 359 (501)
T 1wle_A 296 VAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQM 359 (501)
T ss_dssp EEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 289999999999965 22 577899999999865554 788888888775543
No 56
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.88 E-value=1.1e-05 Score=88.45 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHH-HHHhCCCeeecCceeecc----CCCC----CCCceeec-cC--C--------------------
Q 008040 228 DVFRKRAKIVSEIRK-TVESLGFVEVETPVLQGA----AGGA----EARPFVTY-HN--S-------------------- 275 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~-fl~~~gF~EVeTPiL~~~----~~Ga----~a~pF~t~-~~--~-------------------- 275 (580)
.-.+++..|.+.+++ ++.+.||.||.||+|.+. ..|- .-..|.+. .. .
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 356678899999996 588999999999999964 1221 11122221 01 0
Q ss_pred ------CCeeEEEEecHHHHHHHHHhcc------CC-ceeE-EecccccCCCC----CCCCccceeeeeEeecCCHHHHH
Q 008040 276 ------LGRDLYLRIATELHLKRMLIGG------FE-KIYE-IGRIFRNEGLS----TRHNPEFTTIEMYEAYSDYQSMM 337 (580)
Q Consensus 276 ------~~~~~yL~~Spql~lk~llv~g------~~-rVfe-Ig~~FR~E~~~----~rH~pEFtmlE~e~a~~d~~d~m 337 (580)
.+.++||+...+..+=.+.... +. |+|+ ||+|||+| .+ --+.-||+|.|++. |.+.++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHHHH
Confidence 2567899976654322222211 22 8999 99999999 44 26889999999998 88889988
Q ss_pred HHHHHHHHHHHHHH
Q 008040 338 NITEEIVTHCALAV 351 (580)
Q Consensus 338 ~l~E~li~~~~~~v 351 (580)
+..++++......+
T Consensus 387 ee~ee~i~~~~~~~ 400 (522)
T 2cja_A 387 KCAEELHDRYMHIF 400 (522)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888883333434
No 57
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.86 E-value=3e-05 Score=84.73 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CC----CCCCceeeccC-------CCCeeEEEEecHHHHHHH
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GG----AEARPFVTYHN-------SLGRDLYLRIATELHLKR 292 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~G----a~a~pF~t~~~-------~~~~~~yL~~Spql~lk~ 292 (580)
.-.+++..|++.+++.+.++||.||.||.|.+.. .| -....|.+... ..+.++||+...|..+=.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 4578899999999999999999999999998531 12 11233433211 124579999887776543
Q ss_pred HHhccC-------CceeEEecccccCCCC----C---CCCccceeeeeEeecCCHHH--HHHHHHHHHHHH
Q 008040 293 MLIGGF-------EKIYEIGRIFRNEGLS----T---RHNPEFTTIEMYEAYSDYQS--MMNITEEIVTHC 347 (580)
Q Consensus 293 llv~g~-------~rVfeIg~~FR~E~~~----~---rH~pEFtmlE~e~a~~d~~d--~m~l~E~li~~~ 347 (580)
+..... =|+|++++|||+|-.+ + -+.-||+|.|.+. |..-++ ..+..++++...
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHHHH
Confidence 322111 2899999999999752 2 4778999999985 544333 566666665433
No 58
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.86 E-value=3e-05 Score=84.17 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCCeeEEEEecHHHHHHHHHhcc-C
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLGRDLYLRIATELHLKRMLIGG-F 298 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g-~ 298 (580)
.-.+++..|++.+++.+.++||.||.||.|.+.. .|- +...|.+... +.++||.-..|.-+=.++..- +
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~--~~~~~LipTaE~pl~~l~~~ei~ 260 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG--EDEKYLIATSEQPISAYHAGEWF 260 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET--TEEEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC--CCeEEEeccccHHHHHHHhcccc
Confidence 4568899999999999999999999999999642 221 1123433211 578999877777766554332 1
Q ss_pred C--------ceeEEecccccCCCC----C---CCCccceeeeeEeecCCHHHHHHHHHHHHHHH
Q 008040 299 E--------KIYEIGRIFRNEGLS----T---RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHC 347 (580)
Q Consensus 299 ~--------rVfeIg~~FR~E~~~----~---rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~ 347 (580)
. |+|++++|||+|-.. + -+.-||+|.|.+. |...++..+..++|+...
T Consensus 261 ~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 261 ESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp SSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 2 699999999999743 2 4777999999997 677677777777776544
No 59
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.83 E-value=4e-05 Score=84.50 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeeccCCCCeeEEEEecHHHHHHHHHhccC-
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYHNSLGRDLYLRIATELHLKRMLIGGF- 298 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~- 298 (580)
.-.+++..|++.+++.+.++||.||.||.|.+.. .|- +...|.+. +.++||+...|..+=.+.....
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~----~~~~~L~PT~E~~~~~l~~~~i~ 348 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA----ETDLYLTGTAEVVLNALHSGEIL 348 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET----TTTEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec----CCCEEEccCCcHHHHHHHhcccc
Confidence 4678899999999999999999999999999641 221 11234331 3679999887776544332221
Q ss_pred ------CceeEEecccccCCC----CC---CCCccceeeeeEeecCCH--HHHHHHHHHHHHHH
Q 008040 299 ------EKIYEIGRIFRNEGL----ST---RHNPEFTTIEMYEAYSDY--QSMMNITEEIVTHC 347 (580)
Q Consensus 299 ------~rVfeIg~~FR~E~~----~~---rH~pEFtmlE~e~a~~d~--~d~m~l~E~li~~~ 347 (580)
=|+|++++|||+|-. ++ -+.-||||.|.+. |..- ++..+..++++...
T Consensus 349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENA 411 (536)
T ss_dssp EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHH
T ss_pred cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHH
Confidence 289999999999973 22 5788999999996 5543 47788777777554
No 60
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.82 E-value=2.6e-05 Score=85.67 Aligned_cols=47 Identities=23% Similarity=0.185 Sum_probs=36.9
Q ss_pred ceeEEecccccCCC-CC--CCCccceeeeeEeecCCHHHHHHHHHHHHHHH
Q 008040 300 KIYEIGRIFRNEGL-ST--RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHC 347 (580)
Q Consensus 300 rVfeIg~~FR~E~~-~~--rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~ 347 (580)
|+||||+|||+|-. .. -+.-||+|.|+| .|.+.++..+..++++...
T Consensus 211 rl~qig~~FR~E~~pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~~ 260 (505)
T 1ati_A 211 GIAQIGKAFRNEITPRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEER 260 (505)
T ss_dssp EEEEEEEEEBCCSSCCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHHH
T ss_pred EEEEeeceeeCCCCCCCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHHH
Confidence 99999999999943 22 378899999999 7888777766666666544
No 61
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.42 E-value=0.00034 Score=70.72 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=60.6
Q ss_pred HHHHH--HHHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEe--cHHHHHHHHHhc--cCCceeEEeccccc
Q 008040 237 VSEIR--KTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRI--ATELHLKRMLIG--GFEKIYEIGRIFRN 310 (580)
Q Consensus 237 ~~~iR--~fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~--Spql~lk~llv~--g~~rVfeIg~~FR~ 310 (580)
.+.+| +.|..+||.||.||++....-=.. ..|. +..|..+.||. .|.+...++--. .--|.|++|+|||+
T Consensus 7 e~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f~---d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~ 82 (275)
T 1usy_A 7 EKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFFL---DRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRY 82 (275)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCEE---ETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCccccchhhhcc-cccC---CCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEec
Confidence 34455 999999999999999986521110 1342 33567888983 334432222111 22499999999999
Q ss_pred CCCCCCCCccceeeeeEeecCC
Q 008040 311 EGLSTRHNPEFTTIEMYEAYSD 332 (580)
Q Consensus 311 E~~~~rH~pEFtmlE~e~a~~d 332 (580)
|.... -||||++++.-..+
T Consensus 83 e~~~~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 83 SGSDL---VAEYQLGLEKVPRN 101 (275)
T ss_dssp ETTEE---EEEEEEEEEEESCC
T ss_pred CCCCC---CeeeEeCEEEecCC
Confidence 98766 79999999997654
No 62
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.38 E-value=0.00029 Score=77.21 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=41.6
Q ss_pred ceeEEecccccCCC-CCCCCccceeeeeEeecC--CHHHHHHHHHHHHHHH
Q 008040 300 KIYEIGRIFRNEGL-STRHNPEFTTIEMYEAYS--DYQSMMNITEEIVTHC 347 (580)
Q Consensus 300 rVfeIg~~FR~E~~-~~rH~pEFtmlE~e~a~~--d~~d~m~l~E~li~~~ 347 (580)
|+||||+|||++.. +..|.+||+|++.-+... |+.|+..++|.++..+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998776 678999999999999875 7889988888887544
No 63
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.37 E-value=0.0002 Score=79.19 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=43.4
Q ss_pred CceeEEecccccCCC-CCCCCccceeeeeEeecC--CHHHHHHHHHHHHHHH
Q 008040 299 EKIYEIGRIFRNEGL-STRHNPEFTTIEMYEAYS--DYQSMMNITEEIVTHC 347 (580)
Q Consensus 299 ~rVfeIg~~FR~E~~-~~rH~pEFtmlE~e~a~~--d~~d~m~l~E~li~~~ 347 (580)
-|+||||+|||++.. +..|.+||.||+.-+... |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 389999999998776 788999999999998874 7999999999998765
No 64
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.36 E-value=0.00021 Score=79.14 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=43.4
Q ss_pred CceeEEecccccCCC-CCCCCccceeeeeEeecC--CHHHHHHHHHHHHHHH
Q 008040 299 EKIYEIGRIFRNEGL-STRHNPEFTTIEMYEAYS--DYQSMMNITEEIVTHC 347 (580)
Q Consensus 299 ~rVfeIg~~FR~E~~-~~rH~pEFtmlE~e~a~~--d~~d~m~l~E~li~~~ 347 (580)
-|+||||+|||++.. +..|.+||.||+.-+... |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 389999999998776 788999999999998874 7999999999998765
No 65
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.36 E-value=0.00022 Score=79.17 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=43.6
Q ss_pred CceeEEecccccCCC-CCCCCccceeeeeEeecC--CHHHHHHHHHHHHHHH
Q 008040 299 EKIYEIGRIFRNEGL-STRHNPEFTTIEMYEAYS--DYQSMMNITEEIVTHC 347 (580)
Q Consensus 299 ~rVfeIg~~FR~E~~-~~rH~pEFtmlE~e~a~~--d~~d~m~l~E~li~~~ 347 (580)
-|+||||+|||++.. +..|.+||.||+.-+... |+.|+...+|.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 389999999998776 788999999999999874 7999999999998765
No 66
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.34 E-value=0.00023 Score=79.09 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=43.6
Q ss_pred CceeEEecccccCCC-CCCCCccceeeeeEeecC--CHHHHHHHHHHHHHHH
Q 008040 299 EKIYEIGRIFRNEGL-STRHNPEFTTIEMYEAYS--DYQSMMNITEEIVTHC 347 (580)
Q Consensus 299 ~rVfeIg~~FR~E~~-~~rH~pEFtmlE~e~a~~--d~~d~m~l~E~li~~~ 347 (580)
-|+||||+|||++.. +..|.+||.||+.-+... |+.|+...+|.+++.+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 389999999998776 788999999999998874 7999999999999765
No 67
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=97.15 E-value=0.00041 Score=78.79 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCeeecCceeecc
Q 008040 229 VFRKRAKIVSEIRKTVE-SLGFVEVETPVLQGA 260 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl~-~~gF~EVeTPiL~~~ 260 (580)
=.+++..|.+.+|+.|. ..||.||.||+|++.
T Consensus 100 G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 100 GCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 46789999999999998 569999999999963
No 68
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=97.10 E-value=0.00031 Score=76.11 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHH--HhCCCeeecCceeeccC--CCC--C----CCcee---------------eccCCCCeeEEEE
Q 008040 229 VFRKRAKIVSEIRKTV--ESLGFVEVETPVLQGAA--GGA--E----ARPFV---------------TYHNSLGRDLYLR 283 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl--~~~gF~EVeTPiL~~~~--~Ga--~----a~pF~---------------t~~~~~~~~~yL~ 283 (580)
=..++..|.+.+++.+ ...|+.||.||+|.+.. .+. + +.-+. +-...++.++|||
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 4678899999888774 58999999999998653 111 1 11110 0001234578999
Q ss_pred e--cHHH---HHHHHHhc--cCC-ceeEEecccc---cCCCCC---CCCccceeeeeEeecCCHHHHHHHHHHHHHHHHH
Q 008040 284 I--ATEL---HLKRMLIG--GFE-KIYEIGRIFR---NEGLST---RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCAL 349 (580)
Q Consensus 284 ~--Spql---~lk~llv~--g~~-rVfeIg~~FR---~E~~~~---rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~ 349 (580)
. +|-. |++.+-.. -+. +++|||+||| ||-+.. .+.-||||.|++. |.+.++..+..+.++..+..
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~~~ 219 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRLL 219 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHHHHHHH
Confidence 5 3222 33332222 232 8999999999 696432 4677999999995 78888877776666655433
No 69
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=97.04 E-value=0.00093 Score=72.07 Aligned_cols=108 Identities=14% Similarity=-0.007 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHH-hCC-CeeecCceeecc-CCCCCCCceeeccCCCCeeEEEEe-cHHHHHHHH---Hhc---cC
Q 008040 229 VFRKRAKIVSEIRKTVE-SLG-FVEVETPVLQGA-AGGAEARPFVTYHNSLGRDLYLRI-ATELHLKRM---LIG---GF 298 (580)
Q Consensus 229 ~~~~Rs~i~~~iR~fl~-~~g-F~EVeTPiL~~~-~~Ga~a~pF~t~~~~~~~~~yL~~-Spql~lk~l---lv~---g~ 298 (580)
=..+|+.|++..|..+. ++| +.||.||+.... ..|- ..-| . +|||. .-|-.+..+ +-. -+
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH-~d~~-------~--~~LRPeTaqg~~~nfk~~~~s~r~~L 172 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPG-DSAF-------R--GGLRENLLHGALEHYVNCLDLVNKRL 172 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSS-CSCC-------T--TB-CSCSHHHHHHHTTTTTGGGTTBS
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcc-hhhh-------c--ceECCCCChhHHHHHhhhhhhccccC
Confidence 35688999985555554 366 777999995543 2331 2223 2 78886 223322211 111 11
Q ss_pred -CceeEEecccccCC--CCC----CCCccceeeeeEeecCCHHHHHHHHHHHHHHH
Q 008040 299 -EKIYEIGRIFRNEG--LST----RHNPEFTTIEMYEAYSDYQSMMNITEEIVTHC 347 (580)
Q Consensus 299 -~rVfeIg~~FR~E~--~~~----rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~ 347 (580)
=|+.|||+|||||. +.. -+.-||||+|++. |.+.++..+..+.++..+
T Consensus 173 P~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 173 PYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp SEEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred CeEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 16899999999994 333 4668999999984 777666666555555544
No 70
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.95 E-value=0.0018 Score=67.11 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCceeeccC----CCC----CCCceeecc-C----------------------CC
Q 008040 228 DVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAA----GGA----EARPFVTYH-N----------------------SL 276 (580)
Q Consensus 228 ~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~-~----------------------~~ 276 (580)
..-+++..|.+.+|+ ..++||.||-||.|.+.. .|- .-..|.+.. . .-
T Consensus 62 ~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~ 140 (346)
T 3mf2_A 62 LYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLS 140 (346)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEE
T ss_pred hHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccC
Confidence 455778889999999 888999999999998531 220 001233211 0 01
Q ss_pred CeeEEEEecHHHHHHHHHhc-c-C----CceeEEecccccCCC-CCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHH
Q 008040 277 GRDLYLRIATELHLKRMLIG-G-F----EKIYEIGRIFRNEGL-STRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCAL 349 (580)
Q Consensus 277 ~~~~yL~~Spql~lk~llv~-g-~----~rVfeIg~~FR~E~~-~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~ 349 (580)
+.++||....+..+=.+... | + -|+-++|+|||+|.+ +--++-+|||.|+-. |.+.+++.+..|+++..+..
T Consensus 141 ~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae~ 219 (346)
T 3mf2_A 141 PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQA 219 (346)
T ss_dssp EEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 35789998776665554442 2 2 377779999999996 348899999999876 68999999999999876544
No 71
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.92 E-value=0.0084 Score=55.62 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=63.9
Q ss_pred CEEEEEEEEEeEecCCCeEEEEEeeCCe-eEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEE
Q 008040 112 DHVSVAGRVVARRAFGKLAFLTLRDDSG-TIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFV 190 (580)
Q Consensus 112 ~~V~v~GrV~~~R~~gk~~F~~LrD~sg-~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~ 190 (580)
+.|+|.|.|.+++...+-..+.|-|+|| .|.|++..+...+. -. ...-+..|++|.|.|.+. +-+|+.+|.++++.
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~~~-~~-~~~~l~~G~~VrV~G~v~-~fr~~rqI~~~~i~ 124 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSM-SK-RAISMSPGNVVCVFGKIN-SFRSEVELIAQSFE 124 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHH-HH-HHTTCCTTCEEEEEEEEE-CSSSSCEEEEEEEE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCCCc-cc-ccccCCCCCEEEEEEEEE-eeCCEEEEEEEEEE
Confidence 5699999999999998889999999999 69999987642211 11 122269999999999995 56788999999999
Q ss_pred Ecc
Q 008040 191 ILT 193 (580)
Q Consensus 191 vls 193 (580)
++.
T Consensus 125 ~v~ 127 (159)
T 3kf6_A 125 ELR 127 (159)
T ss_dssp EEC
T ss_pred ECC
Confidence 985
No 72
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.64 E-value=0.017 Score=51.94 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=60.1
Q ss_pred CEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEEE
Q 008040 112 DHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVI 191 (580)
Q Consensus 112 ~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~v 191 (580)
..|++.|+|.+++....-.-+.|.|++|.|.+....+.... ....... +..|+.|.|.|.+. +-.|...|.+..+..
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~-~~~~~~~-~~~g~yVrV~G~v~-~f~g~~qi~~~~ir~ 113 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSD-DSSKASE-IRNNVYVRVLGTLK-SFQNRRSISSGHMRP 113 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC---------CCS-CCTTCEEEEEEEEE-EETTEEEEEESEEEE
T ss_pred EEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCc-ccccccc-cCCCCEEEEEEEEE-EeCCEEEEEEEEEEE
Confidence 57999999999998888788899999999999887653211 1112333 69999999999985 457888899988887
Q ss_pred cc
Q 008040 192 LT 193 (580)
Q Consensus 192 ls 193 (580)
+.
T Consensus 114 v~ 115 (136)
T 4gop_B 114 VI 115 (136)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 73
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.58 E-value=0.021 Score=51.06 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=59.6
Q ss_pred CEEEEEEEEEeEecCCCeEEEEEeeCCe-eEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEE
Q 008040 112 DHVSVAGRVVARRAFGKLAFLTLRDDSG-TIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFV 190 (580)
Q Consensus 112 ~~V~v~GrV~~~R~~gk~~F~~LrD~sg-~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~ 190 (580)
..|++.|+|.++.....-.-+.|.|++| .|.+....+.... . ... ..+..|+.|.|.|.+.. -.|...|.+..+.
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~-~-~~~-~~~~~g~yVrV~G~l~~-f~g~~qi~~~~ir 107 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDT-S-SEN-TVVPPETYVKVAGHLRS-FQNKKSLVAFKIM 107 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC------------CCCCTTCEEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCc-c-ccc-ccccCCCEEEEEEEEEe-ECCEEEEEEEEEE
Confidence 5799999999999988888889999999 9999987653211 0 112 33699999999999765 5688889998888
Q ss_pred Ecc
Q 008040 191 ILT 193 (580)
Q Consensus 191 vls 193 (580)
.+.
T Consensus 108 ~v~ 110 (132)
T 3kdf_D 108 PLE 110 (132)
T ss_dssp ECS
T ss_pred EcC
Confidence 774
No 74
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.49 E-value=0.011 Score=51.38 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=59.8
Q ss_pred CCEEEEEEEEEeE---e----cCC---CeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEec-CC
Q 008040 111 NDHVSVAGRVVAR---R----AFG---KLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRT-EK 179 (580)
Q Consensus 111 ~~~V~v~GrV~~~---R----~~g---k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t-~~ 179 (580)
|+.|.+.|+|.++ | +.| ++.++.|.|++|.|.+.+-.+.. + .+ ..+..|++|.|+|.+.+. -.
T Consensus 16 g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~--~---~~-~~l~~G~vv~i~g~~v~~~f~ 89 (115)
T 2k50_A 16 GAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI--K---LL-KKFREGDVIRIKDVNIRGGFG 89 (115)
T ss_dssp TCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG--G---GG-GTCCTTSEEEEEEEEECCCSS
T ss_pred CCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh--h---hh-hcCCCCCEEEEEeeEEccccC
Confidence 4789999999998 2 234 58999999999999999886531 1 12 236999999999998765 46
Q ss_pred ceeEEEEeEEEEcccc
Q 008040 180 GELSVLVNSFVILTKS 195 (580)
Q Consensus 180 ge~el~~~~i~vls~a 195 (580)
|.++|.+.+...+.++
T Consensus 90 g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 90 GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp SSCEEEECTTCCEEEE
T ss_pred CeEEEEECCCceEEEC
Confidence 8888888776555443
No 75
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.37 E-value=0.037 Score=47.60 Aligned_cols=77 Identities=27% Similarity=0.319 Sum_probs=62.5
Q ss_pred CEEEEEEEEEeEe-------cC---CCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCce
Q 008040 112 DHVSVAGRVVARR-------AF---GKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGE 181 (580)
Q Consensus 112 ~~V~v~GrV~~~R-------~~---gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge 181 (580)
..|.|.|+|.++- .. |++.=+.|.|.+|+|.+.+-.+... + .+.+||+|.|.|.+.....|.
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~------~--~l~~Gdvv~i~g~vk~~~~g~ 86 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD------I--DVGRGDYVRVRGYIREGYYGG 86 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG------S--CCCTTCEEEEEEEEEECTTSS
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc------c--ccCCCCEEEEEEEEEEccCCC
Confidence 5799999998863 12 3467799999999999998765321 1 369999999999999888889
Q ss_pred eEEEEeEEEEccccC
Q 008040 182 LSVLVNSFVILTKSL 196 (580)
Q Consensus 182 ~el~~~~i~vls~a~ 196 (580)
+||.+.+...+.+|.
T Consensus 87 ~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 87 LECTANYVEILKKGE 101 (105)
T ss_dssp EEEEEEEEEEEECCC
T ss_pred EEEEeCCceEEEecc
Confidence 999999999998885
No 76
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.14 E-value=0.06 Score=45.51 Aligned_cols=77 Identities=34% Similarity=0.360 Sum_probs=57.4
Q ss_pred CCEEEEEEEEEeEe---c----CC---CeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCc
Q 008040 111 NDHVSVAGRVVARR---A----FG---KLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKG 180 (580)
Q Consensus 111 ~~~V~v~GrV~~~R---~----~g---k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~g 180 (580)
+..|.|.|+|.++- . .| ++.=+.|.|.||+|.+.+-.+... + . +..||+|.|.|.+.. ..|
T Consensus 11 g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~------~-~-i~~Gdvv~i~g~v~~-~~~ 81 (97)
T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD------F-E-VKKGDIAEVSGYVKQ-GYS 81 (97)
T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGG------C-C-CCTTCEEEEEEEEEE-C--
T ss_pred CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccc------c-c-cCCCCEEEEEEEEEE-cCC
Confidence 36799999998863 2 23 477789999999999998765321 1 2 699999999998753 456
Q ss_pred eeEEEEeEEEEccccC
Q 008040 181 ELSVLVNSFVILTKSL 196 (580)
Q Consensus 181 e~el~~~~i~vls~a~ 196 (580)
.++|.+.+...+.||+
T Consensus 82 ~~el~~g~~~~i~k~~ 97 (97)
T 3e0e_A 82 GLEISVDNIGIIEKSL 97 (97)
T ss_dssp CEEEEEEEEEEEECCC
T ss_pred eEEEEECCCcEEEECC
Confidence 8999999998887764
No 77
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=96.01 E-value=0.034 Score=64.09 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhCCCeeecCceeeccCC-C---CCCC-ceeeccCCCCee-EEEEecHHHHHHHHHhc----cCC--c
Q 008040 233 RAKIVSEIRKTVESLGFVEVETPVLQGAAG-G---AEAR-PFVTYHNSLGRD-LYLRIATELHLKRMLIG----GFE--K 300 (580)
Q Consensus 233 Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~-G---a~a~-pF~t~~~~~~~~-~yL~~Spql~lk~llv~----g~~--r 300 (580)
..++.+.+|+.|...||.|+.|..+.+... . ...+ ++.. .|....+ -.||+|.=--|=..+.. +.. |
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L-~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vr 573 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL-LMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVR 573 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEEC-SSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEE-cCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeE
Confidence 345677899999999999999999986421 0 1122 2322 2333333 36886643333233332 222 8
Q ss_pred eeEEecccccCCCCCCCCccceeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q 008040 301 IYEIGRIFRNEGLSTRHNPEFTTIEMYEAY-------------SDYQSMMNITEEIVTHC 347 (580)
Q Consensus 301 VfeIg~~FR~E~~~~rH~pEFtmlE~e~a~-------------~d~~d~m~l~E~li~~~ 347 (580)
+||||+|||.+..+..| +||+++..-+.. .|+.|+...+|.++..+
T Consensus 574 lFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 574 LYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999975443357 999999976654 58999999999998765
No 78
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.48 E-value=0.049 Score=60.72 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeeccC---C--C---CCCCceeeccCCCCee-EEEEecHHHHHHHHHhccC-----C
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGAA---G--G---AEARPFVTYHNSLGRD-LYLRIATELHLKRMLIGGF-----E 299 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~~---~--G---a~a~pF~t~~~~~~~~-~yL~~Spql~lk~llv~g~-----~ 299 (580)
.++.+.+|+.|...||.||.|+.+.+.. . + .+..++.. .|-...+ -.||+|.=--|=..+.-.. =
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L-~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~v 472 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI-SNPKTAEFQVARTTLLPGLLKTIAANRKMPLPL 472 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB-SSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE-cCCCchhHhHHHHHHHHHHHHHHHHHhcCCCce
Confidence 3557789999999999999999998631 0 1 01122321 2333333 4688774332222333221 2
Q ss_pred ceeEEecccccCCCCCCCCccceeeeeEeecC--CHHHHHHHHHHHHHH
Q 008040 300 KIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYS--DYQSMMNITEEIVTH 346 (580)
Q Consensus 300 rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~--d~~d~m~l~E~li~~ 346 (580)
|+||+|+|||.+..+..|.+|+.++..-+... ++.++...+|.++..
T Consensus 473 rlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 473 KLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 79999999998776678899999999876653 577777766665543
No 79
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=95.44 E-value=0.056 Score=52.24 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeeccC--CCCC---CCceeeccCCCCee-EEEEecHHHHHHHHHh----ccCC--ce
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGAA--GGAE---ARPFVTYHNSLGRD-LYLRIATELHLKRMLI----GGFE--KI 301 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~~--~Ga~---a~pF~t~~~~~~~~-~yL~~Spql~lk~llv----~g~~--rV 301 (580)
.++.+.+|+.|...||.||-|-.+++.. ..-+ ....+.-.|-...+ -.||+|-=--|=..+. -+.. |+
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~l 86 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYL 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeE
Confidence 3577889999999999999999998642 1100 01112223545444 4699874332222222 3444 89
Q ss_pred eEEecccccCCCCC------CCCccceeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q 008040 302 YEIGRIFRNEGLST------RHNPEFTTIEMYEAY-------------SDYQSMMNITEEIVTHC 347 (580)
Q Consensus 302 feIg~~FR~E~~~~------rH~pEFtmlE~e~a~-------------~d~~d~m~l~E~li~~~ 347 (580)
||||+||+.++.+. .+..|..+|-.-++. .|+.|+..++|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 87 FEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999765321 234688888776654 47889988888888654
No 80
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.42 E-value=0.042 Score=53.11 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeeccC--CCCC---CCceeeccCCCCee-EEEEecHHHHHHHHHhc----cCC--ce
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGAA--GGAE---ARPFVTYHNSLGRD-LYLRIATELHLKRMLIG----GFE--KI 301 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~~--~Ga~---a~pF~t~~~~~~~~-~yL~~Spql~lk~llv~----g~~--rV 301 (580)
.++.+.+|+.|...||.||-|-.+++.. ..-+ ....+.-.|-...+ -.||+|-=--|=..+.- +.. |+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~l 86 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKF 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEE
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeE
Confidence 3577889999999999999999998642 1100 01111222433333 46888743332223332 333 89
Q ss_pred eEEecccccCCCCC-C-----CCccceeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q 008040 302 YEIGRIFRNEGLST-R-----HNPEFTTIEMYEAY-------------SDYQSMMNITEEIVTHC 347 (580)
Q Consensus 302 feIg~~FR~E~~~~-r-----H~pEFtmlE~e~a~-------------~d~~d~m~l~E~li~~~ 347 (580)
||||+||+.++.+. . +..|..+|-.-++. .|+.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 87 FEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999866431 2 33588888876655 36788888888777554
No 81
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.15 E-value=0.15 Score=44.05 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=54.2
Q ss_pred CEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEEE
Q 008040 112 DHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVI 191 (580)
Q Consensus 112 ~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~v 191 (580)
..|+|.|.|...-..-+ ...+|++|.|+|-++.+. |. ..-+++++-|.|.|.|-+.- ...+|.|..|++
T Consensus 38 ~~V~L~G~Iv~~~~~d~---Y~F~D~TG~I~VeId~~~-----w~--g~~v~p~~~Vri~GevDkd~-~~~eIdV~~i~~ 106 (109)
T 1nnx_A 38 TWVTLRGNIVERISDDL---YVFKDASGTINVDIDHKR-----WN--GVTVTPKDTVEIQGEVDKDW-NSVEIDVKQIRK 106 (109)
T ss_dssp EEEEEEEEEEEEEETTE---EEEEETTEEEEEECCGGG-----ST--TCCCCTTSCEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred CeEEEEEEEEEEeCCCe---EEEECCCccEEEEEChhh-----cC--CcccCCCCEEEEEEEECCCC-CceEEEEEEEEE
Confidence 68999999987653332 567999999999998663 21 12369999999999999643 356899999998
Q ss_pred ccc
Q 008040 192 LTK 194 (580)
Q Consensus 192 ls~ 194 (580)
|.+
T Consensus 107 ~~~ 109 (109)
T 1nnx_A 107 VNP 109 (109)
T ss_dssp C--
T ss_pred ccC
Confidence 754
No 82
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=95.06 E-value=0.15 Score=51.15 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=59.4
Q ss_pred CEEEEEEEEEeEecCCCeEEEEEeeCCe-eEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEE
Q 008040 112 DHVSVAGRVVARRAFGKLAFLTLRDDSG-TIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFV 190 (580)
Q Consensus 112 ~~V~v~GrV~~~R~~gk~~F~~LrD~sg-~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~ 190 (580)
..|++.|+|.++...+.-.-+.|.|++| .|.+.+..+... ... .. ..+..|++|.|.|.+.. -.|...|.+..|.
T Consensus 72 ~~V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~-~~~-~~-~~~~~G~yVrV~G~v~~-f~g~~qi~i~~ir 147 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDD-TSS-EN-TVVPPETYVKVAGHLRS-FQNKKSLVAFKIM 147 (270)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC---------C-CCCCTTCEEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCc-ccc-hh-hcCCCCCEEEEEEEEEe-cCCeeEEEEEEEE
Confidence 4699999999998888777888999999 899998765311 001 12 33699999999999874 4577888888888
Q ss_pred Ecc
Q 008040 191 ILT 193 (580)
Q Consensus 191 vls 193 (580)
.+.
T Consensus 148 ~v~ 150 (270)
T 2pi2_A 148 PLE 150 (270)
T ss_dssp ECS
T ss_pred ecC
Confidence 775
No 83
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=94.82 E-value=0.2 Score=52.95 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=61.9
Q ss_pred CCEEEEEEEEEeE--ecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeE
Q 008040 111 NDHVSVAGRVVAR--RAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNS 188 (580)
Q Consensus 111 ~~~V~v~GrV~~~--R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~ 188 (580)
...++|.|.|.+. +..|+=+|+.|.|+++.|.|++-+.. ..|..+...|..||.|.|.|.+.. | +|.+++
T Consensus 284 ~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayept---k~fr~~vr~L~~GD~V~v~G~v~~---g--tLnvEk 355 (402)
T 3au7_A 284 YRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPT---KQFRNVIRLLRKGDVVEVYGSMKK---D--TINLEK 355 (402)
T ss_dssp TCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGG---TTHHHHHTTCCTTCEEEEEEEEET---T--EEEEEE
T ss_pred CceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccc---hHHHHHHhcCCCCCEEEEEEeecC---C--EEEEEE
Confidence 4679999999987 45677899999999999999986632 236555445699999999999776 4 899999
Q ss_pred EEEcccc
Q 008040 189 FVILTKS 195 (580)
Q Consensus 189 i~vls~a 195 (580)
+++++-+
T Consensus 356 ~~v~~l~ 362 (402)
T 3au7_A 356 IQIVELA 362 (402)
T ss_dssp EEEEECC
T ss_pred EEEcccC
Confidence 9998654
No 84
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.11 Score=45.12 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=55.7
Q ss_pred EEEEEEEEEeE---e------cCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeE-EEecC----
Q 008040 113 HVSVAGRVVAR---R------AFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGS-MKRTE---- 178 (580)
Q Consensus 113 ~V~v~GrV~~~---R------~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~-v~~t~---- 178 (580)
.++|.|||.++ | ..|++.=++|.|.+|.|++.+..+. .+.+..+|..|+++.|+|- |....
T Consensus 16 ~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~-----~~~f~~~l~eG~vy~Is~~~V~~a~~~y~ 90 (114)
T 1ynx_A 16 VWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDF-----ATKFNEILQEGKVYYVSKAKLQPAKPQFT 90 (114)
T ss_dssp CCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHH-----HHHHHHHSCSSSEEEEESCEEEECCTTTS
T ss_pred ceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHHH-----HHHHHhhcccCcEEEECCcEEEECCCCcc
Confidence 48999999964 1 2367888899999999999997643 2334445799999999964 44322
Q ss_pred --CceeEEEEeEEEEcccc
Q 008040 179 --KGELSVLVNSFVILTKS 195 (580)
Q Consensus 179 --~ge~el~~~~i~vls~a 195 (580)
...++|....-+.+.+|
T Consensus 91 ~~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 91 NLTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp SSSSCEEEEECSSCEEEES
T ss_pred cCCCCEEEEECCCCEEEEC
Confidence 24678877766666655
No 85
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=94.01 E-value=0.054 Score=64.73 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=48.4
Q ss_pred CCEEEEEEEEEeEecC----C-CeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEE
Q 008040 111 NDHVSVAGRVVARRAF----G-KLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVL 185 (580)
Q Consensus 111 ~~~V~v~GrV~~~R~~----g-k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~ 185 (580)
|+.|+|+|.|.+++.. | .++|++|.|.+|.+.+++-.+ .|+....+|..+.+|.|+|.|.... .+.|.
T Consensus 1042 g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~-----~~~~~~~~l~~~~~~~v~G~v~~~~--~~~l~ 1114 (1220)
T 2hpi_A 1042 KPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGR-----AYEGVSPKLKEDIPLLVLAEVEKGE--ELRVL 1114 (1220)
T ss_dssp SCEEEEEEEECCC------------CEEEEETTEEEEEC------------------CTTCEEEEEEEEC-------CEE
T ss_pred CCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHH-----HHHHHHHHhccCCEEEEEEEEEECC--CcEEE
Confidence 5789999999988743 4 399999999999999998865 4666667789999999999998655 47899
Q ss_pred EeEEEEcccc
Q 008040 186 VNSFVILTKS 195 (580)
Q Consensus 186 ~~~i~vls~a 195 (580)
|+++.-++.+
T Consensus 1115 ~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1115 AQAVWTLEEV 1124 (1220)
T ss_dssp EEEEEEHHHH
T ss_pred EeeeecHHHH
Confidence 9999877654
No 86
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=93.65 E-value=0.59 Score=39.98 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=56.5
Q ss_pred CEEEEEEEEEeE-----ecCCC---eEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeE
Q 008040 112 DHVSVAGRVVAR-----RAFGK---LAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELS 183 (580)
Q Consensus 112 ~~V~v~GrV~~~-----R~~gk---~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~e 183 (580)
..|.+.|+|.++ ++.|+ +.=+.|.|.||.|.+.+-.+. +..||+|.|.+-....-.|.++
T Consensus 14 ~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~------------l~~Gdvv~i~ng~v~~~~g~~~ 81 (106)
T 2k75_A 14 PYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ------------LQDSDVVRIDNARVAQFNGYLS 81 (106)
T ss_dssp SEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC------------CCTTEEEEEEEEEEEEETTEEE
T ss_pred ceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc------------cCCCCEEEEEeeEEeEECCEEE
Confidence 458888888764 23564 777899999999999887652 5899999999443445678899
Q ss_pred EEEeEEEEccccCCCCC
Q 008040 184 VLVNSFVILTKSLLPLP 200 (580)
Q Consensus 184 l~~~~i~vls~a~~plP 200 (580)
|.+.+...+.+....-|
T Consensus 82 L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 82 LSVGDSSRIESVNVNIP 98 (106)
T ss_dssp EEECTTSEEEECCSCCC
T ss_pred EEECCcEEEEECCCCCc
Confidence 99987766665544444
No 87
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=93.56 E-value=0.52 Score=45.62 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=56.8
Q ss_pred CEEEEEEEEEeEecCC--------CeEEEEEeeCCe---eEEEEEecCccChHHHHhhh-cc--cCCCcEEEEEeEEEec
Q 008040 112 DHVSVAGRVVARRAFG--------KLAFLTLRDDSG---TIQLYCEKERLLSDQFDQLK-VF--VDIGDILGVSGSMKRT 177 (580)
Q Consensus 112 ~~V~v~GrV~~~R~~g--------k~~F~~LrD~sg---~iQvv~~~~~~~~~~~~~~~-~~--l~~gd~v~v~G~v~~t 177 (580)
+.|+|.|.|...+-.- ...|+.|-|.|| .|.|.++.. .|.... .+ ...|.+|.|+|.+..-
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~-----~~~~~gl~l~~~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQE-----QFKEVGLTLDKKNYGKIVELEGEIYNW 160 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHH-----HHHTTTCCTTSCCTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHH-----HhhccCccccccCCCeEEEEEEEEEee
Confidence 5799999999997443 359999999999 477766643 222211 11 3589999999999863
Q ss_pred CC------c-eeEEEEeEEEEcccc
Q 008040 178 EK------G-ELSVLVNSFVILTKS 195 (580)
Q Consensus 178 ~~------g-e~el~~~~i~vls~a 195 (580)
.. + +-+|.|+++++++..
T Consensus 161 r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 161 YDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccccceEEEEEEEEEeccC
Confidence 21 1 568999999999743
No 88
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=93.04 E-value=0.32 Score=47.53 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=55.8
Q ss_pred CEEEEEEEEEeE---e------cCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecC----
Q 008040 112 DHVSVAGRVVAR---R------AFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTE---- 178 (580)
Q Consensus 112 ~~V~v~GrV~~~---R------~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~---- 178 (580)
..++|.|||.++ | ..|++.-++|.|.+|.|++.+..+. .+.+...|..|+++.+++--.+..
T Consensus 19 ~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~-----~~~~~~~l~~G~vy~i~~~~v~~~~~~y 93 (246)
T 1jmc_A 19 SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQ-----VDKFFPLIEVNKVYYFSKGTLKIANKQF 93 (246)
T ss_dssp CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHH-----HHHHGGGCCTTCEEEEECCEEEECCGGG
T ss_pred CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHH-----HHHhhhhcccCCEEEECCCEEEEcccCc
Confidence 358999999976 3 2356778899999999999998642 333445579999999997444322
Q ss_pred ---CceeEEEEeEEEEcccc
Q 008040 179 ---KGELSVLVNSFVILTKS 195 (580)
Q Consensus 179 ---~ge~el~~~~i~vls~a 195 (580)
.+.++|....-+.+.+|
T Consensus 94 ~~~~~~~ei~~~~~T~I~~~ 113 (246)
T 1jmc_A 94 TAVKNDYEMTFNNETSVMPC 113 (246)
T ss_dssp CCCCCSEEEECCTTCEEEEC
T ss_pred ccCCCCEEEEEcCCcEEEEc
Confidence 35788877654444444
No 89
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=91.96 E-value=0.72 Score=53.00 Aligned_cols=106 Identities=24% Similarity=0.248 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCCeeecCceeeccC----CCCCCCceeeccCCCCee-EEEEecHHHHHHHHHhc----c-C--Cc
Q 008040 233 RAKIVSEIRKTVESLGFVEVETPVLQGAA----GGAEARPFVTYHNSLGRD-LYLRIATELHLKRMLIG----G-F--EK 300 (580)
Q Consensus 233 Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----~Ga~a~pF~t~~~~~~~~-~yL~~Spql~lk~llv~----g-~--~r 300 (580)
..++.+.+|+.|...||.||-|-.+.+.. -+....++.. .|-...+ -.||+|.=--|=..+.. + . =|
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L-~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vr 569 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL-LNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERAL 569 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE-SSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE-cCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeE
Confidence 45678889999999999999999998642 1101223322 2333333 36886643332223332 3 2 38
Q ss_pred eeEEecccccCCCCCCCCccceeeeeEeec------------CCHHHHHHHHHHHHHHH
Q 008040 301 IYEIGRIFRNEGLSTRHNPEFTTIEMYEAY------------SDYQSMMNITEEIVTHC 347 (580)
Q Consensus 301 VfeIg~~FR~E~~~~rH~pEFtmlE~e~a~------------~d~~d~m~l~E~li~~~ 347 (580)
+||||+||| + +||.++..-+.. .|+.|+...+|.++..+
T Consensus 570 lFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 570 LFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 999999999 2 899999987765 48999999999999765
No 90
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=91.48 E-value=1.2 Score=38.58 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=54.0
Q ss_pred CEEEEEEEEEeE---e----cCC--CeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEE-eEEEecCCce
Q 008040 112 DHVSVAGRVVAR---R----AFG--KLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS-GSMKRTEKGE 181 (580)
Q Consensus 112 ~~V~v~GrV~~~---R----~~g--k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~-G~v~~t~~ge 181 (580)
..|.+.|+|.++ | +.| .+.=+.|.|.||.|.+.+-.+.. ..+..||+|.|+ |.+. .-.|.
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~---------~~~~~G~vv~i~~g~v~-~~~g~ 82 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA---------GSIKEGQVVKIENAWTT-AFKGQ 82 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT---------TCCCTTCEEEEEEEEEE-EETTE
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh---------hcCCCCCEEEEEeEEEE-EeCCE
Confidence 358999999887 4 235 47778899999999999876531 125899999999 6654 45788
Q ss_pred eEEEEeEEEEccc
Q 008040 182 LSVLVNSFVILTK 194 (580)
Q Consensus 182 ~el~~~~i~vls~ 194 (580)
++|.+.+...+.+
T Consensus 83 ~qL~i~~~~~i~~ 95 (119)
T 1o7i_A 83 VQLNAGSKTKIAE 95 (119)
T ss_dssp EEEEECTTCEEEE
T ss_pred EEEEECCCEEEEE
Confidence 8898887444443
No 91
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=90.39 E-value=2.1 Score=36.66 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCEEEEEEEEEeEec--CCC-eEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEe
Q 008040 111 NDHVSVAGRVVARRA--FGK-LAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVN 187 (580)
Q Consensus 111 ~~~V~v~GrV~~~R~--~gk-~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~ 187 (580)
+..|.+.|+|.++-. .|+ ...+.|-|.||+|-+.+..+.. + ..+..||+|.|.|-....-.|.++|.+.
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~-------~-~~~~~G~~V~i~n~~v~~~~G~~~L~v~ 86 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE-------L-PLLEQGESYLLRSVVVGEYNDRFQVQVN 86 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC-------C-CCCCTTCEEEEEEEEEEEETTEEEEEEC
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc-------c-cccCCCCEEEEEEEEEEEECCEEEEEEC
Confidence 367999999999743 333 5568999999999999986421 1 2369999999995555556799999998
Q ss_pred EEEEcccc
Q 008040 188 SFVILTKS 195 (580)
Q Consensus 188 ~i~vls~a 195 (580)
+...+.+.
T Consensus 87 ~~~~I~~~ 94 (109)
T 2kbn_A 87 KNSSIEKL 94 (109)
T ss_dssp SSSEEEEC
T ss_pred CceEEEEC
Confidence 76555443
No 92
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=88.45 E-value=2.4 Score=37.15 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=49.2
Q ss_pred CCCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEE
Q 008040 110 ENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSF 189 (580)
Q Consensus 110 ~~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i 189 (580)
.|+.|+|-|+|.+++..|+ .|+.-..+.+.|+|.+.... + . .++.+|.|.|+|.. ..+|.+.++
T Consensus 21 vgk~VrivGkV~~~~~~g~-~~~l~s~Dg~~Vtv~l~~p~-~--------~--~l~~~vEViG~V~~----~~tI~~~~~ 84 (121)
T 3kdf_A 21 IDKPVCFVGRLEKIHPTGK-MFILSDGEGKNGTIELMEPL-D--------E--EISGIVEVVGRVTA----KATILCTSY 84 (121)
T ss_dssp TTCEEEEEEEEEEECTTSS-EEEEECTTSCEEEEECSSCC-S--------S--CCCSEEEEEEEECT----TSCEEEEEE
T ss_pred CCCeEEEEEEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCC-C--------c--ccCcEEEEEEEECC----CCeEEEEEE
Confidence 3589999999999998787 34333445568888876531 1 1 23559999999983 356888887
Q ss_pred EEcccc
Q 008040 190 VILTKS 195 (580)
Q Consensus 190 ~vls~a 195 (580)
.-++..
T Consensus 85 ~~fg~~ 90 (121)
T 3kdf_A 85 VQFKED 90 (121)
T ss_dssp EECCCS
T ss_pred EecCCC
Confidence 777643
No 93
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=87.13 E-value=1.4 Score=47.16 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=55.2
Q ss_pred CEEEEEEEEEeE---e------cCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEe-cC---
Q 008040 112 DHVSVAGRVVAR---R------AFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKR-TE--- 178 (580)
Q Consensus 112 ~~V~v~GrV~~~---R------~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~-t~--- 178 (580)
..++|.|||.++ | ..|++.-++|.|.+|.|++.+..+. .+.+...|..|+++.|++-..+ ..
T Consensus 14 ~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G~I~at~~~~~-----~~~f~~~l~eG~vy~Is~~~V~~~~~~y 88 (444)
T 4gop_C 14 NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDA-----VDRFYPLLQENHVYLISKARVNIAKKQF 88 (444)
T ss_dssp CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEETHH-----HHHHTTTCCTTCEEEEESCEEEECCGGG
T ss_pred cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCCEEEEEEeHHH-----HHHHHHheecCCEEEEcCCEEEecCCcc
Confidence 358999999863 4 2357888999999999999998653 3344456799999999974443 22
Q ss_pred ---CceeEEEEeEEEEcccc
Q 008040 179 ---KGELSVLVNSFVILTKS 195 (580)
Q Consensus 179 ---~ge~el~~~~i~vls~a 195 (580)
...++|....-+.+.+|
T Consensus 89 ~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 89 SNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp CSCCCSEEEEECTTCEEEEC
T ss_pred ccCCCCEEEEEcCCcEEEEc
Confidence 23678877654444443
No 94
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=83.96 E-value=0.44 Score=48.24 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=25.2
Q ss_pred cCCC----CccceeccHHHHHHHHcCCCCcccc
Q 008040 542 YGMP----PASGMGLGIDRLVMLLTNSASIRDV 570 (580)
Q Consensus 542 yG~P----P~gG~GiGiDRLvMlltg~~sIrdv 570 (580)
+|++ |...||||+|||+|+..|.++||..
T Consensus 243 ~gl~~~~~~~~afel~le~L~m~~~~i~diR~~ 275 (294)
T 2rhq_A 243 AGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYF 275 (294)
T ss_dssp TTCCTTTCEEEEEEECHHHHHHHHHTCCCTTHH
T ss_pred cCCCCCcCeEEEEEEeHHHHHHHHcCCCHHHHH
Confidence 4665 4788999999999999999999964
No 95
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=81.98 E-value=8.9 Score=33.92 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=48.8
Q ss_pred EEEEEEEEEe---Eec--CCC-eEEEEE-ee-----C-------CeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeE
Q 008040 113 HVSVAGRVVA---RRA--FGK-LAFLTL-RD-----D-------SGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGS 173 (580)
Q Consensus 113 ~V~v~GrV~~---~R~--~gk-~~F~~L-rD-----~-------sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~ 173 (580)
.|.|.|+|.. +|. .|+ ++-+.| .+ . +.-+.|++-.+. -+.+.+.|..||.|.|+|.
T Consensus 4 ~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~-----Ae~~~~~l~KG~~V~V~G~ 78 (134)
T 2vw9_A 4 KVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRT-----AEIANQYLSKGSSVLIEGR 78 (134)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHH-----HHHHHHHCCTTCEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHH-----HHHHHHhCCCCCEEEEEEE
Confidence 4788888876 453 343 333333 22 1 224677766432 1233344699999999999
Q ss_pred EEec----CCce----eEEEEeEEEEccc
Q 008040 174 MKRT----EKGE----LSVLVNSFVILTK 194 (580)
Q Consensus 174 v~~t----~~ge----~el~~~~i~vls~ 194 (580)
+... +.|+ ++|.|++|++|..
T Consensus 79 L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 79 LTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred EEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 9753 4453 7899999999964
No 96
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=79.60 E-value=14 Score=33.69 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=50.3
Q ss_pred CEEEEEEEEEe---EecC--CC-eEEEEE-e-----eC-Ce-------eEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 112 DHVSVAGRVVA---RRAF--GK-LAFLTL-R-----DD-SG-------TIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~~--gk-~~F~~L-r-----D~-sg-------~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
..|+|.|+|.. +|.. |+ ++-+.| . |. +| -+.|++-.+. -+.+.+.|..|+.|.|+
T Consensus 9 N~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~-----Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 9 NKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRL-----AEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp EEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHH-----HHHHHHHCCTTCEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHH-----HHHHHhhcCCCCEEEEE
Confidence 46899999987 5643 43 443333 1 22 22 3677766542 12233446999999999
Q ss_pred eEEEec----CCc----eeEEEEeEEEEcccc
Q 008040 172 GSMKRT----EKG----ELSVLVNSFVILTKS 195 (580)
Q Consensus 172 G~v~~t----~~g----e~el~~~~i~vls~a 195 (580)
|.+... +.| .++|.|++|++|..-
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 999743 445 389999999999753
No 97
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=78.99 E-value=13 Score=31.86 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=48.8
Q ss_pred CEEEEEEEEEe---EecC--CC-eEEEEE-eeC----------CeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEE
Q 008040 112 DHVSVAGRVVA---RRAF--GK-LAFLTL-RDD----------SGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSM 174 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~~--gk-~~F~~L-rD~----------sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v 174 (580)
..|.|.|+|.. +|.. |+ ++-+.| .+. +.-++|++-.+. -+.+.+.|..||.|.|+|.+
T Consensus 6 N~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~-----Ae~~~~~l~KG~~V~V~G~l 80 (116)
T 3vdy_A 6 NQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKT-----AENTALYCQKGSLVGVSGRI 80 (116)
T ss_dssp CCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHH-----HHHHHHHCCTTCEEEEEEEE
T ss_pred eEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHH-----HHHHHHhCCCCCEEEEEEEE
Confidence 35889999986 5533 43 443333 222 124777776542 12233446999999999999
Q ss_pred Eec----CCc----eeEEEEeEEEEcccc
Q 008040 175 KRT----EKG----ELSVLVNSFVILTKS 195 (580)
Q Consensus 175 ~~t----~~g----e~el~~~~i~vls~a 195 (580)
... +.| .++|.|++|++|...
T Consensus 81 ~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 81 QTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 853 345 389999999999753
No 98
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=77.39 E-value=11 Score=30.67 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=46.7
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecC-ccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKE-RLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNS 188 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~-~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~ 188 (580)
.+.|.|. +...| +|++|.+ .+.+...+.-+ .++.+-+....+.+ .||.|.|.=.=....+|.+.+....
T Consensus 14 ~~~G~V~-v~~fG--~FVel~~-~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 14 VIKGRVY-EKDYA--LYIYLFD-YPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp EEEEEEE-EETTE--EEEEETT-CTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEE-EEccE--EEEEECC-CCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 5789999 99999 8999954 22356667666 66555555566667 9999988733223346777665544
No 99
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=77.14 E-value=1.2 Score=44.70 Aligned_cols=29 Identities=28% Similarity=0.646 Sum_probs=25.6
Q ss_pred cCCC-CccceeccHHHHHHHHcCCCCcccc
Q 008040 542 YGMP-PASGMGLGIDRLVMLLTNSASIRDV 570 (580)
Q Consensus 542 yG~P-P~gG~GiGiDRLvMlltg~~sIrdv 570 (580)
+|++ |...|+||+|||+|+..|.++||+.
T Consensus 247 ~~i~~~v~~~el~le~l~~~~~~~~dir~~ 276 (290)
T 3qtc_A 247 WGIDKPWIGAGFGLERLLKVKHDFKNIKRA 276 (290)
T ss_dssp GTCCSCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred CCCCCceEEEEECHHHHHHHHcCCcHHHHH
Confidence 4554 7889999999999999999999975
No 100
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=76.02 E-value=16 Score=32.81 Aligned_cols=69 Identities=20% Similarity=0.300 Sum_probs=45.7
Q ss_pred CCCEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEE
Q 008040 110 ENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSF 189 (580)
Q Consensus 110 ~~~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i 189 (580)
.|+.|+|-|+|.++-..|+ .|..-..+.+.|+|..... ++ -..+-+|.|.|+|.. ..+|.+.++
T Consensus 42 vGk~VriVGkV~~~~~~G~-~~~l~s~Dg~~VtV~l~~p-L~----------~~~~~~VEViG~V~~----~~tI~~~~~ 105 (142)
T 2pi2_E 42 IDKPVCFVGRLEKIHPTGK-MFILSDGEGKNGTIELMEP-LD----------EEISGIVEVVGRVTA----KATILCTSY 105 (142)
T ss_dssp TTCEEEEEEEEEEECTTSS-EEEEECTTSCEEEEECSSC-CS----------SCCCSEEEEEEEECT----TSCEEEEEE
T ss_pred CCCEEEEEEEEeEEcCCCC-EEEEEeCCCcEEEEEeCCC-CC----------ccCCCEEEEEEEECC----CCcEEEEEE
Confidence 4689999999999944454 3333333455888887542 11 144779999999954 345777777
Q ss_pred EEccc
Q 008040 190 VILTK 194 (580)
Q Consensus 190 ~vls~ 194 (580)
.-++.
T Consensus 106 ~~fGd 110 (142)
T 2pi2_E 106 VQFKE 110 (142)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 66653
No 101
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=74.14 E-value=30 Score=28.98 Aligned_cols=77 Identities=13% Similarity=0.333 Sum_probs=46.3
Q ss_pred EEEEEEEEEe---Eec--CCC-eEEEEEe-----eCCee-------EEEEEecCccChHHHHhhhcccCCCcEEEEEeEE
Q 008040 113 HVSVAGRVVA---RRA--FGK-LAFLTLR-----DDSGT-------IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSM 174 (580)
Q Consensus 113 ~V~v~GrV~~---~R~--~gk-~~F~~Lr-----D~sg~-------iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v 174 (580)
.|.|.|+|.. +|- .|. ++=+.|- +.++- ++|++-.+. .+. +.+.|..|+-|.|+|.+
T Consensus 4 ~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~--Ae~---~~~~l~KG~~V~V~G~L 78 (104)
T 1txy_A 4 RLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHE--NQA---ITHSITVGSRITVQGFI 78 (104)
T ss_dssp EEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESST--THH---HHTTCCTTCEEEEEEEE
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHH--HHH---HHhhCCCCCEEEEEEEE
Confidence 5778888876 353 243 3323331 22334 888877653 122 23446999999999999
Q ss_pred Eec--CCc--eeEEEEeEEEEccc
Q 008040 175 KRT--EKG--ELSVLVNSFVILTK 194 (580)
Q Consensus 175 ~~t--~~g--e~el~~~~i~vls~ 194 (580)
... +.| .++|.|+++++|+.
T Consensus 79 ~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 79 SCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EC--------CCEEEEEEEEEC--
T ss_pred EeccCCCCCEEEEEEEEEEEECcC
Confidence 854 233 38999999999863
No 102
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=72.47 E-value=12 Score=32.36 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=37.8
Q ss_pred EEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEe-cCCc-eeEEEEeEEEEccccCC
Q 008040 141 IQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKR-TEKG-ELSVLVNSFVILTKSLL 197 (580)
Q Consensus 141 iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~-t~~g-e~el~~~~i~vls~a~~ 197 (580)
|+|++..+. .+ .+ +.+..|+-|.|+|.+.. ++.| .++|+|++|+.|+...-
T Consensus 49 i~vv~~Gk~--AE---~~-~~l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~ 101 (115)
T 3fhw_A 49 ISAVALGDL--AL---LL-ADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMG 101 (115)
T ss_dssp EEEEEETHH--HH---HH-TTCCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCC
T ss_pred EEEEEEhHH--HH---hh-hccCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCC
Confidence 788887642 12 23 34699999999999985 4444 68999999999976643
No 103
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=71.89 E-value=30 Score=40.77 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=57.7
Q ss_pred CEEEEEEEEEeE--ec--CCC-eEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecC-CceeEEE
Q 008040 112 DHVSVAGRVVAR--RA--FGK-LAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTE-KGELSVL 185 (580)
Q Consensus 112 ~~V~v~GrV~~~--R~--~gk-~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~-~ge~el~ 185 (580)
..|+|.|.|-.+ |. .|+ +.-+.|.|.+++|.|..-.+. ++.-+.+.. |+.|++|.|.|.+...+ .+++.+.
T Consensus 18 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~--~~~~~~~~~-~~~g~~~~~~g~~~~d~~~~~~~~~ 94 (1041)
T 3f2b_A 18 RRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRD--KEDAELMSG-VKKGMWVKVRGSVQNDTFVRDLVII 94 (1041)
T ss_dssp EEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSS--HHHHHHHHT-CCTTCEEEEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecc--cchHHHHhc-CCCCCEEEEEEEEEeccCCcceEEE
Confidence 579999999865 43 355 677789999998887543221 122223334 69999999999997644 6789999
Q ss_pred EeEEEEcccc
Q 008040 186 VNSFVILTKS 195 (580)
Q Consensus 186 ~~~i~vls~a 195 (580)
+.++..+.+.
T Consensus 95 ~~~~~~~~~~ 104 (1041)
T 3f2b_A 95 ANDLNEIAAN 104 (1041)
T ss_dssp EEEEEEECCC
T ss_pred eeeeEEeccc
Confidence 9988776653
No 104
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=71.59 E-value=28 Score=31.46 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=48.6
Q ss_pred CEEEEEEEEEe---EecC--CC-eEEEEE-eeC------------CeeEEEEEecCccChHHHHhhhcccCCCcEEEEEe
Q 008040 112 DHVSVAGRVVA---RRAF--GK-LAFLTL-RDD------------SGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSG 172 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~~--gk-~~F~~L-rD~------------sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G 172 (580)
..|.|.|||.+ +|.. |+ ++-+.| .+. +.-+.|++-.+. -+.+.+.|..|+.|.|+|
T Consensus 17 N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~-----Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 17 NKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRL-----AEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp CCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHH-----HHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHH-----HHHHHhhCCCCCEEEEEE
Confidence 46899999987 5543 43 433333 222 224666665432 122334479999999999
Q ss_pred EEEec----CCc----eeEEEEeEEEEcccc
Q 008040 173 SMKRT----EKG----ELSVLVNSFVILTKS 195 (580)
Q Consensus 173 ~v~~t----~~g----e~el~~~~i~vls~a 195 (580)
.+... +.| .++|.|++|.+|...
T Consensus 92 rL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 92 EMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 99853 335 389999999999753
No 105
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=71.44 E-value=13 Score=32.61 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=43.0
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLV 186 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~ 186 (580)
.+.|.|..+...| +|++|-++ ++.++....+...-+......+.+||.|.|.=.=.....|.+.|..
T Consensus 10 iv~G~V~~i~~~G--~FV~l~~~---~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSl 76 (130)
T 2k4k_A 10 VYTGKVTGLQAYG--AFVALDEE---TQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSI 76 (130)
T ss_dssp EEEEEEEEEETTE--EEEEEETT---EEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEES
T ss_pred EEEEEEEEEeCCe--EEEEECCC---cEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 4789999999888 99999553 6777766554322222234557999999876222223366665543
No 106
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=70.96 E-value=13 Score=34.73 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=33.1
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
.+.|.|.++...| +|++|-+..| +.-.+.-..++..-+....+.++.||.|.|.
T Consensus 18 iv~G~V~~I~~fG--aFV~L~e~~g-~eGLvhiSels~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 18 VVMVNVRSIAEMG--AYVSLLEYNN-IEGMILLSELSRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp EEEEEEEEECSSE--EEEEETTTTT-EEEEEEGGGC------------CTTCEEEEE
T ss_pred EEEEEEEEEeccE--EEEEEccCCC-cEEEEEHHHCCCcccCCHHHhcCCCCEEEEE
Confidence 5899999999998 8999954333 6677766655433444555667999999886
No 107
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=70.79 E-value=15 Score=33.11 Aligned_cols=74 Identities=12% Similarity=0.190 Sum_probs=55.7
Q ss_pred CEEEEEEEEEeEe----------c---------CCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEe
Q 008040 112 DHVSVAGRVVARR----------A---------FGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSG 172 (580)
Q Consensus 112 ~~V~v~GrV~~~R----------~---------~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G 172 (580)
..|.|.|+|..+- . .+.++=+.|-|.+|.|-+.+..+.. .+|..||+|.+.+
T Consensus 27 ~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~~---------~~l~~Gd~v~i~n 97 (145)
T 1wjj_A 27 TGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQV---------DLMKPGATVILRN 97 (145)
T ss_dssp CCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHH---------HHTCTTCEEEEEE
T ss_pred CceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCCc---------CcCCCCCEEEEec
Confidence 3488888887652 1 3458888999999999998876521 2368999999998
Q ss_pred EEEecCCceeEEEEeEEEEccc
Q 008040 173 SMKRTEKGELSVLVNSFVILTK 194 (580)
Q Consensus 173 ~v~~t~~ge~el~~~~i~vls~ 194 (580)
-..+.-+|.++|.+.+..-+.+
T Consensus 98 a~v~~~~G~~~L~vgk~g~Ie~ 119 (145)
T 1wjj_A 98 SRIDMFKGTMRLGVDKWGRIEA 119 (145)
T ss_dssp EEEEEETTEEEEEECTTCCBCC
T ss_pred cEEEeECCEEEEEECCCEEEEE
Confidence 7777778999999987654443
No 108
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=70.37 E-value=40 Score=30.34 Aligned_cols=72 Identities=25% Similarity=0.242 Sum_probs=51.1
Q ss_pred CEEEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEEE
Q 008040 112 DHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVI 191 (580)
Q Consensus 112 ~~V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~v 191 (580)
..|.+.|.|... +.|. +.|.|+||.+-+-- -+.+.+ -+..++.|..|.|.|.+.. .+.+-.|.|.++.=
T Consensus 59 s~VWmQG~VV~~-~~g~---~~LdDgTG~~~v~g-~~~vp~-----g~p~l~~G~YVMV~G~v~~-~s~eP~i~AvKm~D 127 (150)
T 3mxn_B 59 AAVWMQGRVVMA-DRGE---ARLRDPSGDFSVRG-LERVPR-----GRPCLVPGKYVMVMGVVQA-CSPEPCLQAVKMTD 127 (150)
T ss_dssp SEEEEEEEEEEE-ETTE---EEEEETTEEEEEEC-GGGSCC-----CSCCCSTTCEEEEEEEEEE-CSSSCEEEEEEEEE
T ss_pred EEEEEEeEEEEe-CCCe---EEEECCCceEEEee-ccccCC-----CCcccCCCCEEEEEEEEEe-cCCCceEEEEEeee
Confidence 579999999997 4553 78999999755422 121111 1223689999999999875 34478888888887
Q ss_pred ccc
Q 008040 192 LTK 194 (580)
Q Consensus 192 ls~ 194 (580)
||.
T Consensus 128 LS~ 130 (150)
T 3mxn_B 128 LSD 130 (150)
T ss_dssp CCS
T ss_pred CCC
Confidence 775
No 109
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=70.04 E-value=13 Score=34.56 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=34.4
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
.+.|.|.++...| +|++|-+..+ +..++....++...+....+.+.+||.|.|.
T Consensus 18 iv~G~V~~i~~fG--aFV~L~e~~g-veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 18 IVMVNVQQIAEMG--AYVKLLEYDN-IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp EEEEEEEEEETTE--EEEEETTTTT-CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred EEEEEEEEEecce--EEEEEcCCCC-cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 5889999999998 8999942222 5566665554433344455667999999886
No 110
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=67.42 E-value=11 Score=43.45 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCCeeecCceeeccC-----CCCCCCceeeccCCCCee-EEEEecHHHHHHHHHh----ccCC--ceeE
Q 008040 236 IVSEIRKTVESLGFVEVETPVLQGAA-----GGAEARPFVTYHNSLGRD-LYLRIATELHLKRMLI----GGFE--KIYE 303 (580)
Q Consensus 236 i~~~iR~fl~~~gF~EVeTPiL~~~~-----~Ga~a~pF~t~~~~~~~~-~yL~~Spql~lk~llv----~g~~--rVfe 303 (580)
..+.+|+.|...||.||-|-.+++.. ++ .. ....-.|-...+ -.||+|-=--|=..+. -+.. |+||
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~-~~-~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFE 571 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHP-GV-EALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFE 571 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSS-SC-CCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCC-CC-CeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEE
Confidence 34578999999999999999998631 11 11 112223444444 3688874332222222 2333 8999
Q ss_pred EecccccCCCCCCCCccceeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q 008040 304 IGRIFRNEGLSTRHNPEFTTIEMYEAY-------------SDYQSMMNITEEIVTHC 347 (580)
Q Consensus 304 Ig~~FR~E~~~~rH~pEFtmlE~e~a~-------------~d~~d~m~l~E~li~~~ 347 (580)
||+||..++....+..|..+|=.-++. .|+.|+...+|.++..+
T Consensus 572 iG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 572 SGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 999998755433344566666554433 47899988888887543
No 111
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=66.77 E-value=22 Score=28.11 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=41.0
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLV 186 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~ 186 (580)
.+.|.|.++...| +|++|.++ +..++..+.+.... + +.+..||.|.|.=.=....+|.+.+..
T Consensus 8 iv~G~V~~v~~~G--~fV~l~~~---~~Gllh~sel~~~~---~-~~~~~Gd~V~v~V~~vd~~~~~i~lsl 70 (80)
T 2k52_A 8 FYKGVVTRIEKYG--AFINLNEQ---VRGLLRPRDMISLR---L-ENLNVGDEIIVQAIDVRPEKREIDFKY 70 (80)
T ss_dssp EEEEEEEEEETTE--EEEEEETT---EEEEECGGGCSSCC---G-GGCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEEeCCE--EEEEECCC---CEEEEEHHHCCccc---c-eeeCCCCEEEEEEEEEECCCCEEEEEE
Confidence 3899999999987 89999653 56666655443111 1 236999999876332333457666544
No 112
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=65.00 E-value=20 Score=30.84 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=41.8
Q ss_pred CCCEEEEEEEEEeEecCCCeEEEEEee-CCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCc--eeEEEE
Q 008040 110 ENDHVSVAGRVVARRAFGKLAFLTLRD-DSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKG--ELSVLV 186 (580)
Q Consensus 110 ~~~~V~v~GrV~~~R~~gk~~F~~LrD-~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~g--e~el~~ 186 (580)
.|+.|+|-|+|.+.+. + =+.|.. ..+.|.|.++.+. . +..+.+|.|.|+|.....| ..+|.+
T Consensus 17 ~g~~VrivGkV~~~~g--~--~~~l~s~d~~~Vtv~l~~~~----------~-~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 17 VGQTVRIVGKVHKVTG--N--TLLMQTSDLGNVEIAMTPDS----------D-VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp TTSEEEEEEEEEEEET--T--EEEEECTTSCEEEEECCSSC----------C-GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred CCCeEEEEEEEeeeCC--C--EEEEEeCCCCEEEEEeCCCC----------C-cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 3589999999999995 3 334544 3457777766542 1 2568999999999832211 255555
Q ss_pred eE
Q 008040 187 NS 188 (580)
Q Consensus 187 ~~ 188 (580)
..
T Consensus 82 ~~ 83 (114)
T 4gop_A 82 FT 83 (114)
T ss_dssp CS
T ss_pred EE
Confidence 44
No 113
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=62.46 E-value=51 Score=29.30 Aligned_cols=71 Identities=20% Similarity=0.323 Sum_probs=49.4
Q ss_pred CCCEEEEEEEEE--eE-ec-CC-CeEEEEEee-CCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeE
Q 008040 110 ENDHVSVAGRVV--AR-RA-FG-KLAFLTLRD-DSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELS 183 (580)
Q Consensus 110 ~~~~V~v~GrV~--~~-R~-~g-k~~F~~LrD-~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~e 183 (580)
.++.++|.|.|. ++ |. .+ .+.| .|.| +...|.|....-. ++ +.+-|.-|.|+|.+... |.
T Consensus 31 ~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~v~V~Y~Gil--PD-------lFrEGqgVVa~G~l~~~--g~-- 96 (136)
T 1j6q_A 31 AGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLGGEILVTYDDLL--PD-------LFREGQGIVAQGVLGED--GK-- 96 (136)
T ss_dssp TTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTCCCEEEEECSCC--TT-------SCCSSSEEEEEEEECST--TS--
T ss_pred CCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCCCEEEEEECCCC--Cc-------cccCCCeEEEEEEECCC--Ce--
Confidence 468999999996 44 54 24 3666 5688 7789999886542 32 35779999999998643 32
Q ss_pred EEEeEEEEccccC
Q 008040 184 VLVNSFVILTKSL 196 (580)
Q Consensus 184 l~~~~i~vls~a~ 196 (580)
+.|++ ||.||.
T Consensus 97 F~A~e--VLaKhd 107 (136)
T 1j6q_A 97 LAATE--VLAKHD 107 (136)
T ss_dssp EEEEE--EECCC-
T ss_pred EEEEE--EEecCC
Confidence 55665 788885
No 114
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=61.91 E-value=4.3 Score=44.47 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeecc
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGA 260 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 260 (580)
+++++.||++|...||.|+.+|.+.+.
T Consensus 60 ~~~~~~ir~~f~~mGF~e~~~p~ies~ 86 (549)
T 2du7_A 60 METIERLRQAYLRMGFEEMINPVIVDE 86 (549)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSCEEH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeEeeh
Confidence 567888999999999999999999863
No 115
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=61.15 E-value=41 Score=32.99 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=51.5
Q ss_pred CEEEEEEEEEe---Eec--CCC-eEEEEE-eeC---------CeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEE
Q 008040 112 DHVSVAGRVVA---RRA--FGK-LAFLTL-RDD---------SGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMK 175 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk-~~F~~L-rD~---------sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~ 175 (580)
..|.|.|+|.. +|. .|+ ++-+.| .+. +.-+.|++-.+. -+.+. .|..||.|.|+|.+.
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~-----Ae~~~-~l~KG~~V~V~G~l~ 202 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWREL-----AEWAS-ELRKGDGLLVIGRLV 202 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHH-----HHHHT-TCCTTCEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChH-----HHHhh-hcCCCCEEEEEEEEE
Confidence 46899999987 454 343 443343 332 235777776542 12334 579999999999997
Q ss_pred ec----CCce----eEEEEeEEEEccc
Q 008040 176 RT----EKGE----LSVLVNSFVILTK 194 (580)
Q Consensus 176 ~t----~~ge----~el~~~~i~vls~ 194 (580)
.. +.|+ ++|.|++|++|..
T Consensus 203 ~~~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 203 NDSWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEECCCC
T ss_pred eeEEECCCCCEEEEEEEEEEEEEECcc
Confidence 53 4453 7899999999964
No 116
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=60.93 E-value=45 Score=29.71 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=50.3
Q ss_pred CEEEEEEEEEe---EecC--CC-eEEEEE-eeC-------------CeeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 112 DHVSVAGRVVA---RRAF--GK-LAFLTL-RDD-------------SGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~~--gk-~~F~~L-rD~-------------sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
..|+|.|+|.. +|.. |+ ++-+.| .+. +.-+.|++-.+. -+.+.+.|..||.|.|+
T Consensus 6 N~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~-----Ae~~~~~l~KG~~V~V~ 80 (145)
T 1qvc_A 6 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKL-----AEVASEYLRKGSQVYIE 80 (145)
T ss_dssp EEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHH-----HHHHHHHCCTTCEEEEE
T ss_pred EEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHH-----HHHHHHhcCCCCEEEEE
Confidence 36899999987 5643 43 444444 221 235778776542 12233446999999999
Q ss_pred eEEEec----CCce----eEE---EEeEEEEccc
Q 008040 172 GSMKRT----EKGE----LSV---LVNSFVILTK 194 (580)
Q Consensus 172 G~v~~t----~~ge----~el---~~~~i~vls~ 194 (580)
|.+... +.|+ ++| .+++|.+|..
T Consensus 81 G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~ 114 (145)
T 1qvc_A 81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 114 (145)
T ss_dssp EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCC
T ss_pred EEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccC
Confidence 999753 3453 677 7788888864
No 117
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=60.30 E-value=41 Score=29.93 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=51.0
Q ss_pred CCCEEEEEEEEE--eE-ecC-C-CeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEE
Q 008040 110 ENDHVSVAGRVV--AR-RAF-G-KLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSV 184 (580)
Q Consensus 110 ~~~~V~v~GrV~--~~-R~~-g-k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el 184 (580)
.++.++|.|.|. ++ |.. + .+.| .|.|+...|.|....-. ++ +.+-|.-|.|+|.+... | .+
T Consensus 27 ~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gil--PD-------lFrEGqgVVa~G~l~~~--g--~F 92 (136)
T 1sr3_A 27 VGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGIL--PD-------LFREGQGVVVQGELEKG--N--HI 92 (136)
T ss_dssp TTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESCC--CT-------TCCTTSEEEEEEEECSS--S--EE
T ss_pred CCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCCC--Cc-------cccCCCeEEEEEEECCC--C--eE
Confidence 468999999999 34 542 3 3666 56899889999987643 32 34779999999998642 2 35
Q ss_pred EEeEEEEccccCC
Q 008040 185 LVNSFVILTKSLL 197 (580)
Q Consensus 185 ~~~~i~vls~a~~ 197 (580)
.|++ ||.||..
T Consensus 93 ~A~e--VLAKhde 103 (136)
T 1sr3_A 93 LAKE--VLAKHDE 103 (136)
T ss_dssp EESS--CBCCSCC
T ss_pred EEEE--EEecCCC
Confidence 6665 8888853
No 118
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=60.22 E-value=48 Score=33.31 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=49.2
Q ss_pred EEEEEEEEEe---Eec--CCC-eEEEEE-e-----eC-------CeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeE
Q 008040 113 HVSVAGRVVA---RRA--FGK-LAFLTL-R-----DD-------SGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGS 173 (580)
Q Consensus 113 ~V~v~GrV~~---~R~--~gk-~~F~~L-r-----D~-------sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~ 173 (580)
.|.|.|+|.. +|. .|+ ++-+.| . |. +.-+.|++-.+. -+.+.+ |..||.|.|+|.
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~-----Ae~~~~-l~KG~~V~V~Gr 204 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDL-----AENMKE-LRKGDPVMIMGR 204 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHH-----HHHHTT-CCTTCEEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHH-----HHHHHh-cCCCCEEEEEEE
Confidence 4789999987 564 353 343333 2 11 124777776542 233445 799999999999
Q ss_pred EEec----CCc----eeEEEEeEEEEccc
Q 008040 174 MKRT----EKG----ELSVLVNSFVILTK 194 (580)
Q Consensus 174 v~~t----~~g----e~el~~~~i~vls~ 194 (580)
+... +.| .++|.|++|++|..
T Consensus 205 L~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 205 LVNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEEECC------CEEEEEEEEEEEECCC
T ss_pred EeeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 9853 334 48999999999964
No 119
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=57.58 E-value=5.2 Score=45.91 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=49.2
Q ss_pred CCEEEEEEEEEeEec--CC--CeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCC--CcEEEEEeEEEecC-CceeE
Q 008040 111 NDHVSVAGRVVARRA--FG--KLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDI--GDILGVSGSMKRTE-KGELS 183 (580)
Q Consensus 111 ~~~V~v~GrV~~~R~--~g--k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~--gd~v~v~G~v~~t~-~ge~e 183 (580)
|+.|+|.|.|.+... .| +..=+.+.|++|.+++++-... | +++.+.. |+.+.|.|++...+ .|.++
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~-----~--~~~~~~~~~g~~~~~~G~~~~~~~~~~~~ 237 (780)
T 1gm5_A 165 GEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQD-----Y--LQTYLKQLTGKEVFVTGTVKSNAYTGQYE 237 (780)
T ss_dssp SCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCC-----T--THHHHHTTCSSCEEEEEEECSCCTTSSCC
T ss_pred CCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcH-----H--HHhhCccCCCCEEEEEEEEEEccCCCcEE
Confidence 467999999987532 23 3555678899999999876532 1 2223467 99999999998631 24445
Q ss_pred EEEeEEEEc
Q 008040 184 VLVNSFVIL 192 (580)
Q Consensus 184 l~~~~i~vl 192 (580)
+.--++.+.
T Consensus 238 ~~~p~~~~~ 246 (780)
T 1gm5_A 238 IHNAEVTPK 246 (780)
T ss_dssp EEEEEEECS
T ss_pred EEcCEEeec
Confidence 544444443
No 120
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=55.44 E-value=3.3 Score=44.40 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.7
Q ss_pred CCccceeccHHHHHHHHcC
Q 008040 545 PPASGMGLGIDRLVMLLTN 563 (580)
Q Consensus 545 PP~gG~GiGiDRLvMlltg 563 (580)
.|..||+||+|||+.+|-.
T Consensus 333 ~PavGFaig~eRl~~~l~~ 351 (456)
T 3lc0_A 333 IPCAGFGFGDCVIVELLQE 351 (456)
T ss_dssp CCEEEEEEESSHHHHHHHH
T ss_pred CCEEEEEeEHHHHHHHHHh
Confidence 4899999999999998853
No 121
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=54.45 E-value=16 Score=30.78 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=33.7
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
.+.|.|.++...| +|++|-++ +..++....+....++.....+.+||.|.|.
T Consensus 34 iv~G~V~~v~~~G--~fV~l~~~---~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 34 IVTGKVTAVDAKG--ATVELADG---VEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp EEEEEEEEECSSC--EEEECSTT---CBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred EEEEEEEEEECCe--EEEEECCC---CEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 4889999999888 89999653 3444444433221122233457999999875
No 122
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=53.41 E-value=6.8 Score=43.63 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeecc
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGA 260 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 260 (580)
+++++.||++|...||.|+.+|.+.+.
T Consensus 68 ~~~~~~IR~if~~mGF~E~~~p~vese 94 (665)
T 2odr_A 68 NDTIENLRQAYLRMGFEEYINPVIVDE 94 (665)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeee
Confidence 456788999999999999999999863
No 123
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.94 E-value=13 Score=31.04 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=35.0
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccC-hHHHHhhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLL-SDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~-~~~~~~~~~~l~~gd~v~v~ 171 (580)
.+.|.|.++...| +|++|-+-...+..++....+. ....+...+.++.||.|.|.
T Consensus 15 i~~G~V~~v~~fG--~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~Vk 70 (103)
T 2eqs_A 15 IYNGKVTSIMQFG--CFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVK 70 (103)
T ss_dssp EEEEEEEEECSSC--EEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEE
T ss_pred EEEEEEEEEeccE--EEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEE
Confidence 5789999999998 8999975222355566554431 10011122346899999886
No 124
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=50.18 E-value=22 Score=31.20 Aligned_cols=37 Identities=11% Similarity=0.349 Sum_probs=27.6
Q ss_pred hcccCCCcEEEEEeEEEec----CCc----eeEEEEeEEEEcccc
Q 008040 159 KVFVDIGDILGVSGSMKRT----EKG----ELSVLVNSFVILTKS 195 (580)
Q Consensus 159 ~~~l~~gd~v~v~G~v~~t----~~g----e~el~~~~i~vls~a 195 (580)
.+.|..||.|.|+|.+... +.| .++|.|++|++|++.
T Consensus 83 ~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 83 YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp HHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred HhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 3446999999999999843 345 389999999999753
No 125
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=50.15 E-value=45 Score=29.53 Aligned_cols=78 Identities=13% Similarity=0.331 Sum_probs=50.1
Q ss_pred CEEEEEEEEEe---Eec--CCC-eEEEEEe-----eCCe-------eEEEEEecCccChHHHHhhhcccCCCcEEEEEeE
Q 008040 112 DHVSVAGRVVA---RRA--FGK-LAFLTLR-----DDSG-------TIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGS 173 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk-~~F~~Lr-----D~sg-------~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~ 173 (580)
..|.|.|+|.. +|- .|. ++=+.|- +..| -|+|++-.+.. +.+.+.|..|+-|.|+|.
T Consensus 20 NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~A-----E~~~~yl~KGs~V~VeGr 94 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHEN-----QAITHSITVGSRITVQGF 94 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGG-----GGGGTTCCTTCEEEEEEE
T ss_pred eEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHH-----HHHHHhcCCCCEEEEEEE
Confidence 36888999876 453 343 4433441 1112 27777775531 223455799999999999
Q ss_pred EEec--CCc--eeEEEEeEEEEccc
Q 008040 174 MKRT--EKG--ELSVLVNSFVILTK 194 (580)
Q Consensus 174 v~~t--~~g--e~el~~~~i~vls~ 194 (580)
+... +.| .+.+.|+++++|+.
T Consensus 95 L~tr~~k~G~kr~~~~a~~i~~l~~ 119 (134)
T 1v1q_A 95 ISCHKAKNGLSKMVLHAEQIELIDS 119 (134)
T ss_dssp EEEECTTTTSCEEEEEEEEEEETTS
T ss_pred EEEEECCCCCEEEEEEEEEEEECcC
Confidence 9854 334 47779999999964
No 126
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=49.91 E-value=5.6 Score=42.66 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=16.9
Q ss_pred CCccceeccHHHHHHHHcC
Q 008040 545 PPASGMGLGIDRLVMLLTN 563 (580)
Q Consensus 545 PP~gG~GiGiDRLvMlltg 563 (580)
.|..|||||+|||+.+|..
T Consensus 342 ~pavGfaiGieRli~~L~e 360 (465)
T 3net_A 342 MPGVGISIGLTRLISRLLK 360 (465)
T ss_dssp CCEEEEEEEHHHHHHHHHH
T ss_pred CceeeeeccHHHHHHHHHH
Confidence 5889999999999998864
No 127
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=49.70 E-value=92 Score=26.32 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=36.5
Q ss_pred CCEEEEEEEEEeEec----CCC-eEEEEEeeCCe---eEEEEEecCccChHHH-HhhhcccCCCcEEEEEeEEEecC
Q 008040 111 NDHVSVAGRVVARRA----FGK-LAFLTLRDDSG---TIQLYCEKERLLSDQF-DQLKVFVDIGDILGVSGSMKRTE 178 (580)
Q Consensus 111 ~~~V~v~GrV~~~R~----~gk-~~F~~LrD~sg---~iQvv~~~~~~~~~~~-~~~~~~l~~gd~v~v~G~v~~t~ 178 (580)
|....+-|+|+.+-. .-+ .-|....|+.+ .=|..+.- .+++.+ ..++.-|+.|++|.|+|.++..+
T Consensus 3 ~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC--~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 3 GSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRC--MGDNFPASLLKDQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp -CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEE--ECC---------CCCTTCEEEEEEEEECCC
T ss_pred ccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEE--cCccchHHHHHHHHhCCCEEEEEeEEEeee
Confidence 467899999999976 223 44555556543 22222211 122233 45677789999999999999765
No 128
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=49.08 E-value=9.2 Score=42.51 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeecc
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGA 260 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 260 (580)
+++++.||++|...||.|+.+|.+.+.
T Consensus 68 ~~~~~~IR~if~~mGF~E~~~p~vese 94 (648)
T 2odr_B 68 NDTIENLRQAYLRMGFEEYINPVIVDE 94 (648)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeeh
Confidence 456788999999999999999999863
No 129
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=48.94 E-value=1.2e+02 Score=25.62 Aligned_cols=75 Identities=15% Similarity=0.359 Sum_probs=47.2
Q ss_pred CEEEEEEEEEe---Eec--CCC--eEEEEEee----CCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEe-c--
Q 008040 112 DHVSVAGRVVA---RRA--FGK--LAFLTLRD----DSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKR-T-- 177 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk--~~F~~LrD----~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~-t-- 177 (580)
..|.|.|||.+ .|. .|. ..|-.-.+ ....|-|++...... ... +..|+.|.|+|.+.. .
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe------~~~-~~kG~~v~v~G~lrsy~~~ 84 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFE------GMN-LEVGTRVKIEGQLRSYNRK 84 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGST------TCC-CCTTCEEEEEEEEEEEECC
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhh------HHh-hcCCCEEEEEEEEEecceE
Confidence 56899999976 232 353 22322222 334788888765421 123 368999999999963 2
Q ss_pred --CCc----eeEEEEeEEEEcc
Q 008040 178 --EKG----ELSVLVNSFVILT 193 (580)
Q Consensus 178 --~~g----e~el~~~~i~vls 193 (580)
+.| -+||.|+++++|.
T Consensus 85 ~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 85 SPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp --------EEEEEEEEEEEEEC
T ss_pred ECCCCCEEEEEEEEEEEEEEcc
Confidence 234 4899999999885
No 130
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=48.39 E-value=9.5 Score=42.56 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeecc
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGA 260 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 260 (580)
+++++.||++|...||.|+.+|.+.+.
T Consensus 68 ~~~~~~IReif~~mGF~E~~~p~vese 94 (685)
T 2odr_D 68 NDTIENLRQAYLRMGFEEYINPVIVDE 94 (685)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeeh
Confidence 456788999999999999999999863
No 131
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.24 E-value=6.4 Score=34.13 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=32.1
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
.+.|.|.++...| +|++| ++.+ +..++....+....++.....+.+||.|.|.
T Consensus 25 iv~G~V~~I~~fG--aFV~l-~g~~-~~Glvhisel~~~~~~~~~~~~~~Gd~V~Vk 77 (119)
T 2cqo_A 25 IFQGEVAMVTDYG--AFIKI-PGCR-KQGLVHRTHMSSCRVDKPSEIVDVGDKVWVK 77 (119)
T ss_dssp EEEEEEEEEETTE--EEEEC-TTCS-SCEEEEHHHHCSSCCSCHHHHCCTTCEEEEE
T ss_pred EEEEEEEEEeCce--EEEEE-CCCc-EEEEEEHHHCCcccccChhhcCCCCCEEEEE
Confidence 5889999999988 89999 3321 2334433222111112223346899999876
No 132
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=47.50 E-value=10 Score=42.50 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeecc
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGA 260 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~ 260 (580)
+++++.||++|...||.|+.+|.+.+.
T Consensus 68 ~~~~~~IReif~~mGF~Ev~~p~Vese 94 (701)
T 2odr_C 68 NDTIENLRQAYLRMGFEEYINPVIVDE 94 (701)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEEeee
Confidence 456788999999999999999999863
No 133
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=45.31 E-value=45 Score=28.24 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=39.7
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChH-HHHhhhcccCCCcEEEEEeEEEecCCceeEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSD-QFDQLKVFVDIGDILGVSGSMKRTEKGELSV 184 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~-~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el 184 (580)
.+.|.|..+...| +|++|-++ +..++..+.+..+ ........+.+||.|.|.=.=....+|.+.+
T Consensus 33 ~~~G~V~~v~~~G--~FV~l~~~---~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~l 98 (115)
T 2khi_A 33 KLTGRVTNLTDYG--CFVEIEEG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISL 98 (115)
T ss_dssp EEEEEEEEEETTE--EEEECSTT---CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEE
T ss_pred EEEEEEEEEECCE--EEEEECCC---CEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEE
Confidence 4899999999988 89999543 5666665544210 1112233479999998863222333455544
No 134
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=43.25 E-value=8.9 Score=39.40 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.8
Q ss_pred CCccceeccHHHHHHHHc
Q 008040 545 PPASGMGLGIDRLVMLLT 562 (580)
Q Consensus 545 PP~gG~GiGiDRLvMllt 562 (580)
-|..||+||+|||+++|.
T Consensus 318 ~pavGfaiglerl~~~l~ 335 (344)
T 1z7m_A 318 AFAIGFCCHMDTILKALE 335 (344)
T ss_dssp CCCEEEEEEHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHH
Confidence 478999999999998875
No 135
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=43.04 E-value=2.1e+02 Score=26.83 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=45.9
Q ss_pred CEEEEEEEEEe---EecC--CC-eEEEEE-ee--------------CCeeEEEEEecCccChHHHHhhhcccCCCcEEEE
Q 008040 112 DHVSVAGRVVA---RRAF--GK-LAFLTL-RD--------------DSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGV 170 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~~--gk-~~F~~L-rD--------------~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v 170 (580)
..|+|.|+|.+ +|.. |+ ++-+.| .+ .+.-+.|++-.+. . +.+.+.|..||.|.|
T Consensus 5 N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~Vvawgkl--A---E~v~~~L~KG~~V~V 79 (199)
T 3eiv_A 5 TVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQA--A---ENVAESLQRGMRVIV 79 (199)
T ss_dssp CEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHH--H---HHHHHHCCTTCEEEE
T ss_pred cEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHH--H---HHHHHhcCCCCEEEE
Confidence 46899999986 4543 43 443333 21 1224677776542 1 223344699999999
Q ss_pred EeEEEec----CCc----eeEEEEeEEEE
Q 008040 171 SGSMKRT----EKG----ELSVLVNSFVI 191 (580)
Q Consensus 171 ~G~v~~t----~~g----e~el~~~~i~v 191 (580)
+|.+... +.| .++|.|++|.+
T Consensus 80 eGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 80 QGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 9999853 233 48888888864
No 136
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=42.01 E-value=27 Score=32.35 Aligned_cols=55 Identities=20% Similarity=0.112 Sum_probs=37.6
Q ss_pred EEEEEEEeEecCCCeEEEEEeeC---C----eeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDD---S----GTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~---s----g~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
.|.|+|.++...| +|++|..- . ..++-++....+.....+.+...++.||.|.+.
T Consensus 60 iV~G~V~~V~~~g--a~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~ak 121 (179)
T 3m7n_A 60 VVLGRVVDLRNSI--ALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKAR 121 (179)
T ss_dssp EEEEEEEEECSSE--EEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEE
T ss_pred EEEEEEEEEeCCc--EEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEE
Confidence 5789999998765 89999651 1 157777776554322223455567999999876
No 137
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=41.94 E-value=8.8 Score=40.68 Aligned_cols=18 Identities=22% Similarity=0.759 Sum_probs=15.5
Q ss_pred CCccceeccHHHHHHHHc
Q 008040 545 PPASGMGLGIDRLVMLLT 562 (580)
Q Consensus 545 PP~gG~GiGiDRLvMllt 562 (580)
-|.-|||||+|||+++|.
T Consensus 335 ~pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 335 VPCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHH
Confidence 367899999999999874
No 138
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=40.92 E-value=14 Score=36.56 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCCccceeccHHHHHHHHcCCCCcccccc
Q 008040 544 MPPASGMGLGIDRLVMLLTNSASIRDVIA 572 (580)
Q Consensus 544 ~PP~gG~GiGiDRLvMlltg~~sIrdvi~ 572 (580)
-|.++=+--|+|||.|+|-|.+||-|+..
T Consensus 163 ~pv~~EITYGLERiamylQ~vd~vydl~w 191 (298)
T 1j5w_A 163 KDIPLEITYGLERIAMYLQGVDNVYEVQW 191 (298)
T ss_dssp SSCCEEEEEEHHHHHHHHHTCSSGGGCEE
T ss_pred CccceeecccHHHHHHHHhCCCceecccc
Confidence 46788899999999999999999999764
No 139
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=40.71 E-value=54 Score=28.19 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=47.8
Q ss_pred CEEEEEEEEEe---Eec--CCC-eEEEEE-e-----eC--------CeeEEEEEec-CccChHHHHhhhcccCCCcEEEE
Q 008040 112 DHVSVAGRVVA---RRA--FGK-LAFLTL-R-----DD--------SGTIQLYCEK-ERLLSDQFDQLKVFVDIGDILGV 170 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk-~~F~~L-r-----D~--------sg~iQvv~~~-~~~~~~~~~~~~~~l~~gd~v~v 170 (580)
..|.|.|+|.+ +|. .|+ ++-+.| . |. +.-+.|++-. +. -+.+.+.|..||.|.|
T Consensus 7 N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~-----Ae~~~~~l~KG~~V~V 81 (124)
T 3ulp_A 7 NKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNI-----VDLIDKYLRKGRRVYV 81 (124)
T ss_dssp EEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHH-----HHHHHHHCCTTCEEEE
T ss_pred eEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchH-----HHHHHhhcCCCCEEEE
Confidence 36889999986 554 343 443333 1 11 1246676655 21 1223344699999999
Q ss_pred EeEEEe----cC--Cc----eeEEEEe----EEEEccc
Q 008040 171 SGSMKR----TE--KG----ELSVLVN----SFVILTK 194 (580)
Q Consensus 171 ~G~v~~----t~--~g----e~el~~~----~i~vls~ 194 (580)
+|.+.. .+ .| .++|.|+ ++++|+.
T Consensus 82 ~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 82 QGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 999974 24 56 3889997 8998864
No 140
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=40.39 E-value=50 Score=32.79 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=39.8
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSV 184 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el 184 (580)
.+.|.|.++...| +|++|-+-. .+..++..+.+...-+......+..||.|.|.=.=....+|.+.|
T Consensus 14 iv~G~V~~I~~fG--aFV~L~e~~-gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~L 80 (275)
T 3aev_A 14 FVVATVKRIHNYG--AFLELDEYP-GKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDL 80 (275)
T ss_dssp EEEEEEEEEETTE--EEEEETTST-TCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEE
T ss_pred EEEEEEEEEECcE--EEEEECCCC-CeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEE
Confidence 5889999999998 899995311 235555544433222223345579999998762222223454443
No 141
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=40.18 E-value=1.5e+02 Score=29.40 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=47.2
Q ss_pred CCEEEEEEEEEeEec----CCC--eEEEEEeeCCe-eEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeE
Q 008040 111 NDHVSVAGRVVARRA----FGK--LAFLTLRDDSG-TIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELS 183 (580)
Q Consensus 111 ~~~V~v~GrV~~~R~----~gk--~~F~~LrD~sg-~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~e 183 (580)
+..|.|.|.|..... .|+ ++-+.|.|.|. .|+|.+-.... +.+-.....||+|.+...-.++-.|++.
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~-----~~LP~v~~~GDII~l~~vki~~~~g~~~ 89 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNY-----EALPIIYKNGDIVRFHRLKIQVYKKETQ 89 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSG-----GGSCCCCSTTCEEEEEEEEEEEETTEEE
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCCh-----HHCCCCCCCCCEEEEEEEEEEEECCeEE
Confidence 367899999987643 464 88899999764 35555543321 1222323889999999988777677655
Q ss_pred EEE
Q 008040 184 VLV 186 (580)
Q Consensus 184 l~~ 186 (580)
+..
T Consensus 90 ~v~ 92 (294)
T 1xjv_A 90 GIT 92 (294)
T ss_dssp EEE
T ss_pred EEc
Confidence 543
No 142
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=40.10 E-value=15 Score=36.50 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=25.7
Q ss_pred CCCccceeccHHHHHHHHcCCCCcccccc
Q 008040 544 MPPASGMGLGIDRLVMLLTNSASIRDVIA 572 (580)
Q Consensus 544 ~PP~gG~GiGiDRLvMlltg~~sIrdvi~ 572 (580)
-|.++=+--|+|||.|+|-|.+||-|++.
T Consensus 175 ~pv~~EITYGLERlamylQ~vd~vyDl~w 203 (311)
T 3rf1_A 175 DLVSAEITYGLERIAMYLQNVDNVYDIVW 203 (311)
T ss_dssp SSCCEEEEEEHHHHHHHHTTCSSGGGSEE
T ss_pred cccceeeehhHHHHHHHHhCCCeeeeccc
Confidence 46778899999999999999999999764
No 143
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=39.88 E-value=11 Score=39.28 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=16.0
Q ss_pred CCccceeccHHHHHHHHc
Q 008040 545 PPASGMGLGIDRLVMLLT 562 (580)
Q Consensus 545 PP~gG~GiGiDRLvMllt 562 (580)
.|..||+||+|||+.+|-
T Consensus 347 ~pAvGFaiglerL~~~l~ 364 (373)
T 3rac_A 347 APAVGFAFEVERVMAVLE 364 (373)
T ss_dssp CCCEEEEEEHHHHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHH
Confidence 589999999999998874
No 144
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=39.44 E-value=1.6e+02 Score=25.47 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=44.7
Q ss_pred eEEEEEeeCCeeEEE-EEecCccChHHHHhhhcccCCCcEEEEEeEEEecCC-ceeEEEEeEEEEccc
Q 008040 129 LAFLTLRDDSGTIQL-YCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEK-GELSVLVNSFVILTK 194 (580)
Q Consensus 129 ~~F~~LrD~sg~iQv-v~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~-ge~el~~~~i~vls~ 194 (580)
--=+.|+||...+|. ++.... . +... ...|..|++|.++=....+-. |.--|.+.+++||..
T Consensus 44 RyRl~lSDG~~~~~~~mLatql-n-~~v~--~g~l~~~sIirl~~y~~~~v~~~k~vliIl~levl~~ 107 (123)
T 2b29_A 44 RYRLLMSDGLNTLSSFMLATQL-N-PLVE--EEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKS 107 (123)
T ss_dssp EEEEEEECSSEEEEEEEECGGG-H-HHHH--TTSSCTTCEEEEEEEEEEECSSSCEEEEEEEEEEEEC
T ss_pred eEEEEEECcchheeeehhHHHH-H-HHHh--cCCccCCCEEEEEEEEEEEecCCcEEEEEEeeEEeec
Confidence 445789999999998 876542 1 1221 233699999999877555444 777888999999976
No 145
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=38.99 E-value=11 Score=39.75 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=17.5
Q ss_pred CCCccceeccHHHHHHHHcCCC
Q 008040 544 MPPASGMGLGIDRLVMLLTNSA 565 (580)
Q Consensus 544 ~PP~gG~GiGiDRLvMlltg~~ 565 (580)
-.|..||+||+|||+.+|....
T Consensus 310 ~~pavGfaiglerL~~~l~~~~ 331 (400)
T 3od1_A 310 PAQATGFGVRIDLLVEALNGEI 331 (400)
T ss_dssp CCCEEEEEEEHHHHHHHHCC--
T ss_pred CCCEEEEEeeHHHHHHHHHhcC
Confidence 3689999999999999886543
No 146
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=38.74 E-value=1.7e+02 Score=24.22 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=49.2
Q ss_pred CCCEEEEEEEEEe---Eec-CC-CeEEEEEeeC---CeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCce
Q 008040 110 ENDHVSVAGRVVA---RRA-FG-KLAFLTLRDD---SGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGE 181 (580)
Q Consensus 110 ~~~~V~v~GrV~~---~R~-~g-k~~F~~LrD~---sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge 181 (580)
.++.++|.|-|.. .|. .| .+.| .|.|. ...|.|.+..-. ++ +++-|.-|.++|.+.. ..|
T Consensus 7 ~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~Gil--PD-------lFrEGqgVV~~G~l~~-~~g- 74 (94)
T 2kct_A 7 KLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGAV--PD-------TFKPGVEVIIEGGLAP-GED- 74 (94)
T ss_dssp TTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESCC--CT-------TCCTTCEEEEEEEECT-TCS-
T ss_pred CCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCCC--Cc-------cccCCCeEEEEEEEeC-CCC-
Confidence 3578999999973 454 24 3666 56787 779999987642 32 3477999999999852 023
Q ss_pred eEEEEeEEEEccccC
Q 008040 182 LSVLVNSFVILTKSL 196 (580)
Q Consensus 182 ~el~~~~i~vls~a~ 196 (580)
.+.|++ ||.||.
T Consensus 75 -~F~A~e--vLaKh~ 86 (94)
T 2kct_A 75 -TFKART--LMTKCP 86 (94)
T ss_dssp -EEEEEE--EEESSC
T ss_pred -EEEEeE--EEEeCC
Confidence 255665 788884
No 147
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=38.73 E-value=9.5 Score=40.72 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=16.4
Q ss_pred CCC-ccceeccHHHHHHHHcC
Q 008040 544 MPP-ASGMGLGIDRLVMLLTN 563 (580)
Q Consensus 544 ~PP-~gG~GiGiDRLvMlltg 563 (580)
.|+ .+|||||+|||+..+..
T Consensus 329 ~p~~~~gfgiGveRli~al~e 349 (458)
T 2i4l_A 329 APIHGGSYGVGVSRLLGAIIE 349 (458)
T ss_dssp EECEEEEEEEEHHHHHHHHHH
T ss_pred eceEEeeecccHHHHHHHHHH
Confidence 456 56999999999998754
No 148
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=36.54 E-value=71 Score=31.22 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=24.0
Q ss_pred ccCCCcEEEEEeEEEecCC-----c-----eeEEEEeEEEEccc
Q 008040 161 FVDIGDILGVSGSMKRTEK-----G-----ELSVLVNSFVILTK 194 (580)
Q Consensus 161 ~l~~gd~v~v~G~v~~t~~-----g-----e~el~~~~i~vls~ 194 (580)
.+.+||.|.|+|++...+. + ..-|.|..|+.+++
T Consensus 224 ~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 224 SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 3699999999999976431 1 45677888887764
No 149
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=34.33 E-value=14 Score=38.98 Aligned_cols=19 Identities=37% Similarity=0.707 Sum_probs=16.2
Q ss_pred CccceeccHHHHHHHHcCC
Q 008040 546 PASGMGLGIDRLVMLLTNS 564 (580)
Q Consensus 546 P~gG~GiGiDRLvMlltg~ 564 (580)
|.-|||||+|||+.++...
T Consensus 306 pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 306 PAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CEEEEEEEHHHHHHHHHHT
T ss_pred CeEEEEEcHHHHHHHHHhc
Confidence 5678999999999998754
No 150
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=33.58 E-value=9 Score=43.51 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeecc--C----CCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhccCCceeEEecc
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGA--A----GGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRI 307 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~--~----~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~g~~rVfeIg~~ 307 (580)
+.|.+.+-+||.++|-.-|..--|.+. | ..|++-+|.-+.- +|. .---..|+-..-||
T Consensus 63 ~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~-~g~---------------~~p~~~~~~~~Q~c 126 (739)
T 2ztg_A 63 DEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVT-SGV---------------APPPANPLTISQPC 126 (739)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTT-TSS---------------SCCSSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHh-CCC---------------CCCCCCCccccccc
Confidence 456677889999999999987666552 1 2455556642110 010 00123678888899
Q ss_pred cccCCC---C--CCCCccceeeee
Q 008040 308 FRNEGL---S--TRHNPEFTTIEM 326 (580)
Q Consensus 308 FR~E~~---~--~rH~pEFtmlE~ 326 (580)
.|.-++ . .||..=|.||=-
T Consensus 127 iR~~D~envg~t~rH~tfFeMlgn 150 (739)
T 2ztg_A 127 IRLDDLDSVGRTGRHLTLFEMMAH 150 (739)
T ss_dssp ECGGGGGGTTTSSSCCSEEEEEEE
T ss_pred ccCcccccCCCCCcchhhhhccCc
Confidence 997443 2 499999988854
No 151
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=33.41 E-value=12 Score=40.87 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=15.5
Q ss_pred CCc-cceeccHHHHHHHHcC
Q 008040 545 PPA-SGMGLGIDRLVMLLTN 563 (580)
Q Consensus 545 PP~-gG~GiGiDRLvMlltg 563 (580)
+|+ +|||||+|||+.+|..
T Consensus 435 ~p~~g~~giGveRli~~l~e 454 (572)
T 2j3l_A 435 SVIMGCYGIGVSRLLSAIVE 454 (572)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred eeeeeccccCHHHHHHHHHH
Confidence 565 4899999999998754
No 152
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=33.15 E-value=15 Score=38.47 Aligned_cols=18 Identities=44% Similarity=0.981 Sum_probs=15.2
Q ss_pred CccceeccHHHHHHHHcC
Q 008040 546 PASGMGLGIDRLVMLLTN 563 (580)
Q Consensus 546 P~gG~GiGiDRLvMlltg 563 (580)
|.-|||||+|||+.++..
T Consensus 300 pavGf~igveRl~~~l~e 317 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQA 317 (423)
T ss_dssp CEEEEEEEHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHh
Confidence 445899999999998875
No 153
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=32.95 E-value=15 Score=38.36 Aligned_cols=19 Identities=26% Similarity=0.740 Sum_probs=15.9
Q ss_pred CccceeccHHHHHHHHcCC
Q 008040 546 PASGMGLGIDRLVMLLTNS 564 (580)
Q Consensus 546 P~gG~GiGiDRLvMlltg~ 564 (580)
|.-|||||+|||+.++...
T Consensus 301 pa~Gf~igieRl~~~l~e~ 319 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEAE 319 (421)
T ss_pred CeEEEeecHHHHHHHHHhc
Confidence 4568999999999998753
No 154
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=32.14 E-value=53 Score=33.22 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=35.0
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
.+.|.|.++..+| +|++|-+.. .+..++..+.++......+.+.+..||.|.|.
T Consensus 16 iv~G~V~~I~~fG--aFV~L~ey~-gveGLvhiSels~~~i~~~~~~~kvGd~V~Vk 69 (308)
T 1q8k_A 16 VVMVNVRSIQEMG--AYVSLLEYN-NIEGMIHLSELSRRRIRSINKLIRIGRNECVK 69 (308)
T ss_dssp EEEEEEEEEETTE--EEEESCTTT-SCCEEECGGGTSCSSCSCCTTTCSSSCEEEEE
T ss_pred EEEEEEEEEeCcE--EEEEECCCC-CeEEEEEhHHcCcccccCHHHhcCCCCEEEEE
Confidence 5789999999988 899995311 24455554443221122344557899999876
No 155
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=31.19 E-value=76 Score=31.83 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=48.9
Q ss_pred CEEEEEEEEEe---Eec--CCC-eEEEEE-ee-----C-------CeeEEEEEecCccChHHHHhhhcc-cCCCcEEEEE
Q 008040 112 DHVSVAGRVVA---RRA--FGK-LAFLTL-RD-----D-------SGTIQLYCEKERLLSDQFDQLKVF-VDIGDILGVS 171 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk-~~F~~L-rD-----~-------sg~iQvv~~~~~~~~~~~~~~~~~-l~~gd~v~v~ 171 (580)
..|.|.|+|.. +|. .|+ ++-+.| .+ . +.-+.|++-.+. -+.+.+. |..|+.|.|+
T Consensus 6 N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~-----Ae~~~~~~l~KG~~V~Ve 80 (301)
T 1se8_A 6 NHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKP-----AEWQAERNLKGGDAVVVE 80 (301)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHH-----HHHHHHTCCCTTCEEEEE
T ss_pred eEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHH-----HHHHHhhCCCCCCEEEEE
Confidence 35889999875 453 343 333333 22 1 124677776542 2234455 6999999999
Q ss_pred eEEEec----CCc----eeEEEEeEEEEcccc
Q 008040 172 GSMKRT----EKG----ELSVLVNSFVILTKS 195 (580)
Q Consensus 172 G~v~~t----~~g----e~el~~~~i~vls~a 195 (580)
|.+... +.| -++|.|++|++|...
T Consensus 81 G~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 81 GTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 999842 334 378999999999753
No 156
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=30.83 E-value=77 Score=26.55 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=46.9
Q ss_pred CEEEEEEEEEe---Eec--CCC-eEEEEEee-----CCe-------eEEEEEecCccChHHHHhhhcccCCCcEEEEEeE
Q 008040 112 DHVSVAGRVVA---RRA--FGK-LAFLTLRD-----DSG-------TIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGS 173 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk-~~F~~LrD-----~sg-------~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~ 173 (580)
..|.|.|++.. +|- .|. ++=+.|-- ..| .++|++-.+. -+ +.+ +..|+-|.|+|.
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~-----Ae-~~~-l~KG~~v~veGr 80 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQ-----AE-EWQ-YRQGDCATVEGF 80 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHH-----HH-HST-TCTTCEEEEEEE
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHH-----hh-hhc-cCCCCEEEEEEE
Confidence 35788888876 453 243 33333321 111 2666665432 12 445 699999999999
Q ss_pred EEecC-C-ceeEEEEeEEEEcc
Q 008040 174 MKRTE-K-GELSVLVNSFVILT 193 (580)
Q Consensus 174 v~~t~-~-ge~el~~~~i~vls 193 (580)
+.... . ..+.+++++|+.+.
T Consensus 81 L~~rs~~~~~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 81 LAQKSRRSLMPMLRIQNIKEYK 102 (103)
T ss_dssp EEESSSSCCCEEEEEEEEEECC
T ss_pred EEECccCCccEEEEEEEEEEcC
Confidence 98543 2 27899999998873
No 157
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=30.43 E-value=17 Score=39.23 Aligned_cols=18 Identities=22% Similarity=0.759 Sum_probs=15.6
Q ss_pred CCccceeccHHHHHHHHc
Q 008040 545 PPASGMGLGIDRLVMLLT 562 (580)
Q Consensus 545 PP~gG~GiGiDRLvMllt 562 (580)
-|..||++|+|||+++|-
T Consensus 388 ~pavGfa~gierl~~~le 405 (517)
T 4g85_A 388 VPCVGLSIGVERIFSIVE 405 (517)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCcccccchHHHHHHHHH
Confidence 478899999999998874
No 158
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=30.24 E-value=30 Score=32.05 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=46.3
Q ss_pred CEEEEEEEEEe---Eec--CCC-eEEEEE-ee-----C--------CeeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 112 DHVSVAGRVVA---RRA--FGK-LAFLTL-RD-----D--------SGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk-~~F~~L-rD-----~--------sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
..|+|.|+|.. +|. .|+ ++-+.| .+ . +.-+.|++-.+. -+.+.+.|..||.|.|+
T Consensus 7 N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~-----Ae~~~~~l~KG~~V~Ve 81 (178)
T 1eqq_A 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKL-----AEVASEYLRKGSQVYIE 81 (178)
T ss_dssp EEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHH-----HHHHHHHCCTTCEEEEC
T ss_pred eEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHH-----HHHHHHhcCCCCEEEEE
Confidence 36889999987 443 343 222222 11 1 224677765442 12233446999999999
Q ss_pred eEEEec----CCce----eEE---EEeEEEEccc
Q 008040 172 GSMKRT----EKGE----LSV---LVNSFVILTK 194 (580)
Q Consensus 172 G~v~~t----~~ge----~el---~~~~i~vls~ 194 (580)
|.+... +.|+ ++| .+++|++|..
T Consensus 82 GrL~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~ 115 (178)
T 1eqq_A 82 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 115 (178)
T ss_dssp CEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC
T ss_pred EEEEeeeEECCCCCEEEEEEEeeeecCeEEEccc
Confidence 999752 4453 566 6677777753
No 159
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=29.08 E-value=22 Score=37.89 Aligned_cols=89 Identities=21% Similarity=0.339 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCCeeecCceeecc--C----CCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhc----cCCceeEE
Q 008040 235 KIVSEIRKTVESLGFVEVETPVLQGA--A----GGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIG----GFEKIYEI 304 (580)
Q Consensus 235 ~i~~~iR~fl~~~gF~EVeTPiL~~~--~----~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~----g~~rVfeI 304 (580)
+|-+.+-+||.++|-.-|..--|.+. | ..|+..+|+ -...| -..|+-..
T Consensus 7 eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FK---------------------p~flG~~~p~~~r~t~s 65 (465)
T 1yfs_A 7 EIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFK---------------------NVFLGLEKRPYKRATSC 65 (465)
T ss_dssp HHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTH---------------------HHHHTSSCCSCSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhh---------------------HHhcCCCCCCCCceecc
Confidence 45566778999999999987777652 1 234455553 12222 25789999
Q ss_pred eccccc-------CCC--CCCCCccceeeeeEeecCCH--HHHHHHHHHHHH
Q 008040 305 GRIFRN-------EGL--STRHNPEFTTIEMYEAYSDY--QSMMNITEEIVT 345 (580)
Q Consensus 305 g~~FR~-------E~~--~~rH~pEFtmlE~e~a~~d~--~d~m~l~E~li~ 345 (580)
-+|.|+ |+. ++||..=|.||-= .+|.|| ++.+..+-+++.
T Consensus 66 QkCiRag~~hNDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~AwE~LT 116 (465)
T 1yfs_A 66 QKCLRVSGKHNDLEQVGYTSRHHTFFEMLGN-FSFGDYFKKEAIEYAWEFVT 116 (465)
T ss_dssp EEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHH
T ss_pred ccccccCCCcccHhhcCCCCCccchheeccc-cchhhhhHHHHHHHHHHHHH
Confidence 999993 322 4599999999854 578885 667776666663
No 160
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=28.51 E-value=97 Score=26.22 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=39.4
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccCh-HHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEe
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLS-DQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVN 187 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~-~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~ 187 (580)
.+.|.|.++.++| +|++|-.+ .+..++..+.... ..++...+.+..||.|.|.=.=....++.+.+...
T Consensus 24 i~~G~V~~v~~fG--~fV~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk 93 (119)
T 1wi5_A 24 LLTGTVSSLEDHG--YLVDIGVD--GTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVG 93 (119)
T ss_dssp EEEEEEEEECSSE--EEEECCCS--SCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECC
T ss_pred EEEEEEEEEeCce--EEEEECCC--CeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEc
Confidence 5889999999998 89999621 2334444332100 01223345579999998852111222455555443
No 161
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=27.59 E-value=1.2e+02 Score=29.42 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=48.3
Q ss_pred CEEEEEEEEEe---Eec--CCC-eEEEEEe------eCCe-------eEEEEEecCccChHHHHhhhcccCCCcEEEEEe
Q 008040 112 DHVSVAGRVVA---RRA--FGK-LAFLTLR------DDSG-------TIQLYCEKERLLSDQFDQLKVFVDIGDILGVSG 172 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk-~~F~~Lr------D~sg-------~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G 172 (580)
..|.|.|+|.+ +|. .|+ ++-+.|- |..| -+.|++-.+. -+.+.+.|..|+.|.|+|
T Consensus 6 N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~-----Ae~~~~~l~KG~~V~V~G 80 (264)
T 2fxq_A 6 NQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQ-----AEMWGDLLEKGQLIFVEG 80 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHH-----HHHHTTTCCTTCEEEEEE
T ss_pred eEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchH-----HHHHHHhCCCCCEEEEEE
Confidence 35888888876 453 243 3333331 1112 3666665431 223444579999999999
Q ss_pred EEEecC---Cc----eeEEEEeEEEEcccc
Q 008040 173 SMKRTE---KG----ELSVLVNSFVILTKS 195 (580)
Q Consensus 173 ~v~~t~---~g----e~el~~~~i~vls~a 195 (580)
.+.... .| -++|.|++|.+|...
T Consensus 81 ~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 81 RLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 997532 34 378999999999754
No 162
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=25.24 E-value=19 Score=40.92 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.7
Q ss_pred CccceeccHHHHHHHHcCCCCccccccCC
Q 008040 546 PASGMGLGIDRLVMLLTNSASIRDVIAFP 574 (580)
Q Consensus 546 P~gG~GiGiDRLvMlltg~~sIrdvi~FP 574 (580)
||---|+|+|||+++|-|.+|.=|+ +|+
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HHH
Confidence 5667899999999999999999998 664
No 163
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=25.04 E-value=35 Score=36.38 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=20.1
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCC
Q 008040 536 FVTALEYGMPPASGMGLGIDRLVMLLTNS 564 (580)
Q Consensus 536 yl~al~yG~PP~gG~GiGiDRLvMlltg~ 564 (580)
|+..+----.|..||++|+|||+.+|...
T Consensus 318 Lv~~~g~~~~PavGfa~gleRl~~~l~~~ 346 (467)
T 4e51_A 318 LIEQLGGKPTAACGWAMGIERILELLKEE 346 (467)
T ss_dssp HHHHTTSSCCCEEEEEEEHHHHHHHHHHT
T ss_pred HHHHhCCCCCCceeehHHHHHHHHHHHhc
Confidence 55544211346779999999999988653
No 164
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=24.66 E-value=22 Score=37.05 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=14.6
Q ss_pred CccceeccHHHHHHHHc
Q 008040 546 PASGMGLGIDRLVMLLT 562 (580)
Q Consensus 546 P~gG~GiGiDRLvMllt 562 (580)
|.-|||+|+|||+.+|-
T Consensus 302 P~vg~~igveRl~~~le 318 (420)
T 1qe0_A 302 TGIGFALSIERLLLALE 318 (420)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred CEEEEEecHHHHHHHHH
Confidence 45699999999999883
No 165
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=24.56 E-value=2.2e+02 Score=23.89 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=45.0
Q ss_pred CEEEEEEEEEe---Eec--CC-C-eEEEEE-ee------CCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEec
Q 008040 112 DHVSVAGRVVA---RRA--FG-K-LAFLTL-RD------DSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRT 177 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~g-k-~~F~~L-rD------~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t 177 (580)
..|.|.|+|.. +|- .| + ++=+.| .+ .+.-+.|++-.+. .+ .+.+.+..||-|.|+|.+...
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~--AE---~~~~yl~KG~~V~VeGrL~~r 86 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAV--AQ---ELQDRCRLNDEVVLEGRLRIN 86 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHH--HH---HHHHHCCTTCEEEEEEEEEEE
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHH--HH---HHHHhCCCCCEEEEEEEEEee
Confidence 46899999986 453 24 2 433333 22 2335778876542 12 233447999999999999853
Q ss_pred ----CCc----eeEEEEeEEE
Q 008040 178 ----EKG----ELSVLVNSFV 190 (580)
Q Consensus 178 ----~~g----e~el~~~~i~ 190 (580)
+.| -.||.|++|.
T Consensus 87 ~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 87 SLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp C--------CCEEEEEEEEEE
T ss_pred eEECCCCCEEEEEEEEEEEEE
Confidence 234 3788887764
No 166
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=23.79 E-value=27 Score=37.02 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCCeeecCceeecc--C----CCCCCCceeeccCCCCeeEEEEecHHHHHHHHHhc----cCCceeE
Q 008040 234 AKIVSEIRKTVESLGFVEVETPVLQGA--A----GGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIG----GFEKIYE 303 (580)
Q Consensus 234 s~i~~~iR~fl~~~gF~EVeTPiL~~~--~----~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv~----g~~rVfe 303 (580)
++|-+.+-+||.++|-.-|..--|.+. | ..|+..||+ -...| ...|+-.
T Consensus 5 ~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FK---------------------p~flG~~~p~~~r~~~ 63 (441)
T 3hy0_A 5 AEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFK---------------------DVFLGLDKRNYSRATT 63 (441)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGH---------------------HHHHTSSCCSCSEEEE
T ss_pred HHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhh---------------------hhhcCCCCCCCCCccc
Confidence 345667778999999988876555542 1 223333442 22222 3569999
Q ss_pred Eeccccc-------CCC--CCCCCccceeeeeEeecCCH--HHHHHHHHHHH
Q 008040 304 IGRIFRN-------EGL--STRHNPEFTTIEMYEAYSDY--QSMMNITEEIV 344 (580)
Q Consensus 304 Ig~~FR~-------E~~--~~rH~pEFtmlE~e~a~~d~--~d~m~l~E~li 344 (580)
.-+|.|. |+. ++||..=|-||== .+|.|| ++.+..+-+++
T Consensus 64 sQkCiR~gGKHnDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~Awe~L 114 (441)
T 3hy0_A 64 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGN-FSFGDYFKLDAILFAWLLL 114 (441)
T ss_dssp EEEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHH
T ss_pred cccceecCCCCCCHHhhCCCCccccceeeccc-cccchhhHHHHHHHHHHHh
Confidence 9999996 333 3599999999854 568886 46666665555
No 167
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=23.59 E-value=1e+02 Score=28.90 Aligned_cols=80 Identities=16% Similarity=0.343 Sum_probs=48.5
Q ss_pred CEEEEEEEEEe---EecC--CC-eEEEEE-eeC------Ce-------eEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 112 DHVSVAGRVVA---RRAF--GK-LAFLTL-RDD------SG-------TIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~~--gk-~~F~~L-rD~------sg-------~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
..|+|.|||.. +|.. |+ ++-+.| .+. +| -+.|++-.+.+ -+.+.+.|..|+.|.|+
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~l----Ae~~~~yL~KGs~V~Ve 102 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENL----VKVVEQYLKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHH----HHHHHHHCCTTCEEEEE
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHH----HHHHHhhcCCCCEEEEE
Confidence 46999999987 6643 43 443333 221 12 36676654211 12233446999999999
Q ss_pred eEEEec----CCc----eeEEEEe----EEEEcccc
Q 008040 172 GSMKRT----EKG----ELSVLVN----SFVILTKS 195 (580)
Q Consensus 172 G~v~~t----~~g----e~el~~~----~i~vls~a 195 (580)
|.+... +.| .+||.|+ +|++|..-
T Consensus 103 GrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 103 GQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 999843 345 3788888 68888743
No 168
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=22.90 E-value=58 Score=29.59 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=23.6
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCcc
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERL 150 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~ 150 (580)
.+.|.|.++-..| +|++| + .++..+....+
T Consensus 84 v~~G~V~~v~~fG--~fV~l--~--~~~glvhis~l 113 (172)
T 2c35_B 84 VVDAVVTQVNKVG--LFTEI--G--PMSCFISRHSI 113 (172)
T ss_dssp EEEEEEEEEETTE--EEEEE--T--TEEEEEEGGGS
T ss_pred EEEEEEEEEeCCE--EEEEE--C--CEEEEEEHHHC
Confidence 4789999999999 89999 2 45677766654
No 169
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=21.74 E-value=51 Score=30.35 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=31.6
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHH-----------hhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFD-----------QLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~-----------~~~~~l~~gd~v~v~ 171 (580)
.+.|.|.++...| +|++|-. +..++....+..+.+. .....++.||.|.|.
T Consensus 84 v~~G~V~~v~~~G--~fV~l~~----~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vk 145 (187)
T 1go3_E 84 LIEGEVVDVVEFG--SFVRLGP----LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRAR 145 (187)
T ss_dssp EEEEEEEEEETTE--EEEECSS----SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEE
T ss_pred EEEEEEEEEeCcE--EEEEEcC----ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEE
Confidence 4789999999998 8999932 4555554433211110 122346888888775
No 170
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=21.42 E-value=40 Score=33.31 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=34.3
Q ss_pred EEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEE
Q 008040 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVS 171 (580)
Q Consensus 115 ~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~ 171 (580)
.+.|+|.++..+| +|++|-+-.+ +..++..+.+..+-+..+...++.||.|.|.
T Consensus 14 iv~G~V~~I~~~G--aFV~l~e~~~-~~GlihiSels~~~v~~~~~~~~vGd~V~Vk 67 (266)
T 3cw2_C 14 ILIATVKQVFDYG--SYVSLDEYGG-LQAFLPWSEVSSKWVKNIRDVLKENRKVIVK 67 (266)
T ss_dssp EEEEEEEECCSSS--BEEEETTTTS-EECBBCGGGSSCSSCCCHHHHSCTTCEEEEE
T ss_pred EEEEEEEEEeccE--EEEEEcCCCC-eEEEEEhHHcCcccccCHHHhCcCCCEEEEE
Confidence 5899999999998 8999953122 4555554443221122233457899999875
No 171
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=21.14 E-value=1.7e+02 Score=26.50 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=43.9
Q ss_pred CEEEEEEEEEe---Eec--CCC-eEEEEE-ee--------------CCeeEEEEEecCccChHHHHhhhcccCCCcEEEE
Q 008040 112 DHVSVAGRVVA---RRA--FGK-LAFLTL-RD--------------DSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGV 170 (580)
Q Consensus 112 ~~V~v~GrV~~---~R~--~gk-~~F~~L-rD--------------~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v 170 (580)
..|+|.|+|.+ +|. .|+ ++-+.| .+ .+.-+.|++-.+. -+.+.+.|..||.|.|
T Consensus 5 N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~-----Ae~~~~~l~KG~~V~V 79 (168)
T 3afp_A 5 TTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREA-----AENVAESLTRGARVIV 79 (168)
T ss_dssp CEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHH-----HHHHHHHCCTTCEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHH-----HHHHHHhCCCCCEEEE
Confidence 46889999876 343 243 443333 21 1225777776542 1223344799999999
Q ss_pred EeEEEec----CCce----eEEEEeEE
Q 008040 171 SGSMKRT----EKGE----LSVLVNSF 189 (580)
Q Consensus 171 ~G~v~~t----~~ge----~el~~~~i 189 (580)
+|.+... +.|+ ++|.|++|
T Consensus 80 eGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 80 TGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp EEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred EEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 9999753 3453 67777654
No 172
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=20.49 E-value=20 Score=38.30 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=15.8
Q ss_pred CCCccceeccHHHHHHHHcC
Q 008040 544 MPPASGMGLGIDRLVMLLTN 563 (580)
Q Consensus 544 ~PP~gG~GiGiDRLvMlltg 563 (580)
.|+.+|||+| |||+..|..
T Consensus 248 ~v~~~~~Gig-eRli~alie 266 (459)
T 1nj8_A 248 YAYQTCYGIS-DRVIASIIA 266 (459)
T ss_dssp ECEEEEEEEC-THHHHHHHH
T ss_pred eeeEeeccHH-HHHHHHHHH
Confidence 3577999999 999998853
No 173
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=20.29 E-value=2.2e+02 Score=34.24 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=42.6
Q ss_pred EEEEEEEEeEecCCCeEEEEEeeCCeeEEEEEecCccChHHH-HhhhcccCCCcEEEEEeEEEecCCceeEEEEe
Q 008040 114 VSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQF-DQLKVFVDIGDILGVSGSMKRTEKGELSVLVN 187 (580)
Q Consensus 114 V~v~GrV~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~-~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~ 187 (580)
-.+.|.|.++...| +|++| + .| +...+....+...-| ......+.+||.|.|.=.=.-..++.++|...
T Consensus 904 ~iv~G~V~~V~~fG--aFV~L-~-~g-veGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk 973 (1219)
T 3psi_A 904 SIIPVRVERFWHND--IICTT-N-SE-VECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLL 973 (1219)
T ss_dssp CEEEEEEEEECSSC--EEEEC-T-TS-CEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECC
T ss_pred CEEEEEEEEEecce--EEEEe-C-CC-ceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEec
Confidence 36889999999999 99999 2 23 466665554432211 22334579999998863222334555555443
Done!