BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008041
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 13/189 (6%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V F+ G I S GAD + TG L +A + C A SSD +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 176 TAAG--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY-VLSSAVGERYIALWRTDGV 232
T + ++K ++ + K + + H V F++ + +L++ + ++ LW D
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--DLN 738
Query: 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292
+K+ + + H CR DD L + S G +W ++ E ++
Sbjct: 739 QKECRNTMFG--HTNSVNHCRF----SPDDELL--ASCSADGTLRLWDVRSANERKSINV 790
Query: 293 TKILSSSED 301
+ SSED
Sbjct: 791 KRFFLSSED 799
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQV 39
+FS Y A CS D ++KIWD+ G++
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKL 698
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
+SC +S + +A G +K +++ GH AVR + F+ +GK ++SS+
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS- 1029
Query: 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDN 257
+ I +W Q+ V H D R + +
Sbjct: 1030 EDSVIQVWNW-----QTGDYVFLQAHQETVKDFRLLQD 1062
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 13/189 (6%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V F+ G I S GAD + TG L +A + C A SSD +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 176 TAAG--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY-VLSSAVGERYIALWRTDGV 232
T + ++K ++ + K + + H V F++ + +L++ + ++ LW D
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--DLN 731
Query: 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292
+K+ + + H CR DD L + S G +W ++ E ++
Sbjct: 732 QKECRNTMFG--HTNSVNHCR----FSPDDELL--ASCSADGTLRLWDVRSANERKSINV 783
Query: 293 TKILSSSED 301
+ SSED
Sbjct: 784 KRFFLSSED 792
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQV 39
+FS Y A CS D ++KIWD+ G++
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKL 691
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
+SC +S + +A G +K +++ GH AVR + F+ +GK ++SS+
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS- 1022
Query: 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDN 257
+ I +W Q+ V H D R + +
Sbjct: 1023 EDSVIQVWNW-----QTGDYVFLQAHQETVKDFRLLQD 1055
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V F+ G I S GAD + TG L + +A + C A S+D + +A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 176 TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY-VLSSAVGERYIALW 227
T + ++K +N + + + H V F+++ + +L++ + ++ LW
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL------GKFRASTKG--ISCMAV 167
H G V +F+ + + + +G + + G LL + A+T G ++ +
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCF 1191
Query: 168 SSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYI 224
S DGKML +A G +K +N + Q F + ++ + S + K YV +G YI
Sbjct: 1192 SPDGKMLISAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYI 1249
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 122 AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--G 179
+I+++ G + S DG++ D TG LL I + S D ++L TA+ G
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 180 QLKTFNCSDHKKMQKFSGHPGAVRFMTF 207
+K ++ SGH V + F
Sbjct: 229 YIKIYDVQHANLAGTLSGHASWVLNVAF 256
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAVSSDGKML 174
H VSA+ F GS I S+ DG+ D +G L +S + S +GK +
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 203
Query: 175 --ATAAGQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWR 228
AT LK ++ S K ++ ++GH F FS G + S + + +W
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 161
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 162 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 210
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 263
Query: 283 NIE 285
E
Sbjct: 264 TKE 266
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAVSSDGKML 174
H VSA+ F GS I S+ DG+ D +G L +S + S +GK +
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 175 --ATAAGQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWR 228
AT LK ++ S K ++ ++GH F FS G + S + + +W
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 214
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 267
Query: 283 NIE 285
E
Sbjct: 268 TKE 270
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAVSSDGKML 174
H VSA+ F GS I S+ DG+ D +G L +S + S +GK +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 175 --ATAAGQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWR 228
AT LK ++ S K ++ ++GH F FS G + S + + +W
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 101/266 (37%), Gaps = 28/266 (10%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V+ + F S + SA D + D TG + T + ++ GK+LA
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 176 TAAGQL--KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
+ + + K ++ + ++ GH V ++ NG +++ SA ++ I +W
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEV---- 221
Query: 234 KQSASCVLAME-HPAVFMDCRCIDNGGV-------DDAGLYVLAISETGVCYIWYGQNIE 285
Q+ CV H R +G + ++V+A E + +E
Sbjct: 222 -QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 286 ELRNTKATKILSSSEDVNSKSQKSATAAIF--------AAKLQDIVKPASVHTFVAYGLL 337
+ + S SE S+++KS F K+ D+ + T V +
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 338 LKPSFQKILVNSGEDINLNCSQDGVL 363
++ +L +SG L+C+ D L
Sbjct: 341 VR----GVLFHSGGKFILSCADDKTL 362
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAVSSDGKML 174
H VSA+ F GS I S+ DG+ D +G L +S + S +GK +
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 175 --ATAAGQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWR 228
AT LK ++ S K ++ ++GH F FS G + S + + +W
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 214
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 267
Query: 283 NIE 285
E
Sbjct: 268 TKE 270
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 220
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 273
Query: 283 NIE 285
E
Sbjct: 274 TKE 276
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 128 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 187
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 188 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 236
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 289
Query: 283 NIE 285
E
Sbjct: 290 TKE 292
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 123 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 182
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 183 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 231
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 284
Query: 283 NIE 285
E
Sbjct: 285 TKE 287
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAVSSDGKML 174
H VSA+ F GS I S+ DG+ D +G L +S + S +GK +
Sbjct: 149 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 208
Query: 175 --ATAAGQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWR 228
AT LK ++ S K ++ ++GH F FS G + S + + +W
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 166
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 167 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 215
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 268
Query: 283 NIE 285
E
Sbjct: 269 TKE 271
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAVSSDGKML 174
H VSA+ F GS I S+ DG+ D +G L +S + S +GK +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 175 --ATAAGQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWR 228
AT LK ++ S K ++ ++GH F FS G + S + + +W
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAVSSDGKML 174
H VSA+ F GS I S+ DG+ D +G L +S + S +GK +
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 206
Query: 175 --ATAAGQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWR 228
AT LK ++ S K ++ ++GH F FS G + S + + +W
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 164
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 165 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 213
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 266
Query: 283 NIE 285
E
Sbjct: 267 TKE 269
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 130 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 189
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 190 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 238
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 291
Query: 283 NIE 285
E
Sbjct: 292 TKE 294
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 220
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 273
Query: 283 NIE 285
E
Sbjct: 274 TKE 276
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 217
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 270
Query: 283 NIE 285
E
Sbjct: 271 TKE 273
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 217
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 270
Query: 283 NIE 285
E
Sbjct: 271 TKE 273
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 220
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 273
Query: 283 NIE 285
E
Sbjct: 274 TKE 276
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTKGISCMAVSSDGKML 174
H VSA+ F GS I S+ DG+ D +G L +S + S +GK +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 175 --ATAAGQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWR 228
AT LK ++ S K ++ ++GH F FS G + S + + +W
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 217
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 270
Query: 283 NIE 285
E
Sbjct: 271 TKE 273
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 31/183 (16%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H V +F + I S D V D TG L A + +S + + DG ++
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 170
Query: 176 ------------TAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
TA+GQ LKT D+ V F+ FS NGKY+L++ + +
Sbjct: 171 SSSYDGLCRIWDTASGQCLKTLIDDDNP----------PVSFVKFSPNGKYILAATL-DN 219
Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
+ LW K E +F + G ++++ SE + YIW Q
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-------GGKWIVSGSEDNLVYIWNLQ 272
Query: 283 NIE 285
E
Sbjct: 273 TKE 275
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKG-ISCMAVSSDGKMLA 175
V++++F+ G +++ ++G D L + LG + S +G ISC+ +SSDG L
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360
Query: 176 TAA--GQLKTFNCSDHKKM 192
T + LK + S H+K+
Sbjct: 361 TGSWDKNLKIWAFSGHRKI 379
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 155 FRASTKGIS---CMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSD 209
F+A+ KG S + V S G+ A L + K + PGA + SD
Sbjct: 505 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD 564
Query: 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269
+ K +++S G ++ + + ++ ++ + A M I+ DA +LA
Sbjct: 565 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE-----DASDMLLA 619
Query: 270 ISETGVCYIWYGQNIEELRNTKATKILS 297
I++ G ++ ++ +L K KI++
Sbjct: 620 ITQAGRMLMFPVSDLPQLSKGKGNKIIN 647
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 122 AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--G 179
A++ + +S +DG + D +L+ +F+ T G SC+ +S+DG L T
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 180 QLKTFNCSDHKKMQK 194
+++++ + +++Q+
Sbjct: 206 TVRSWDLREGRQLQQ 220
>pdb|1ZVT|A Chain A, Structure Of The E. Coli Parc C-terminal Domain
pdb|1ZVT|B Chain B, Structure Of The E. Coli Parc C-terminal Domain
Length = 256
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 155 FRASTKGIS---CMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSD 209
F+A+ KG S + V S G+ A L + K + PGA + SD
Sbjct: 35 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD 94
Query: 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269
+ K +++S G ++ + + ++ ++ + A M I+ DA +LA
Sbjct: 95 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE-----DASDMLLA 149
Query: 270 ISETGVCYIWYGQNIEELRNTKATKILS 297
I++ G ++ ++ +L K KI++
Sbjct: 150 ITQAGRMLMFPVSDLPQLSKGKGNKIIN 177
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 119 GVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G++++SF+ G + AG D C + D L G +SC+ V+ DG +AT
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 178 AGQ--LKTFN 185
+ LK +N
Sbjct: 331 SWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 119 GVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G++++SF+ G + AG D C + D L G +SC+ V+ DG +AT
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 178 AGQ--LKTFN 185
+ LK +N
Sbjct: 331 SWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 119 GVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G++++SF+ G + AG D C + D L G +SC+ V+ DG +AT
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 178 AGQ--LKTFN 185
+ LK +N
Sbjct: 331 SWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 119 GVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G++++SF+ G + AG D C + D L G +SC+ V+ DG +AT
Sbjct: 272 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 178 AGQ--LKTFN 185
+ LK +N
Sbjct: 331 SWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 119 GVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G++++SF+ G + AG D C + D L G +SC+ V+ DG +AT
Sbjct: 283 GITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 178 AGQ--LKTFN 185
+ LK +N
Sbjct: 342 SWDSFLKIWN 351
>pdb|4DJ3|A Chain A, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ3|B Chain B, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
Length = 317
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 189 HKKMQKFSGHP----GAVRFMTFSDNGKYVLSSAVGERYIALW 227
H+K+ K++GHP VRF T NG+YV+ + ++ W
Sbjct: 225 HQKVLKYAGHPPFEHSPVRFCT--QNGEYVILDSSWSSFVNPW 265
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
+ + +SSDG+ + + G+L+ ++ + ++F GH V + FS + + ++S++
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 220 GERYIALWRTDG 231
+R I LW T G
Sbjct: 493 -DRTIKLWNTLG 503
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 110 WRLSDC--------HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159
W LS+C H G VS ++ + GS S G DG+V D G L A++
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,403,192
Number of Sequences: 62578
Number of extensions: 582578
Number of successful extensions: 1867
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1701
Number of HSP's gapped (non-prelim): 174
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)